Citrus Sinensis ID: 017601
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 369 | ||||||
| 225460664 | 369 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.989 | 0.774 | 1e-164 | |
| 296081181 | 611 | unnamed protein product [Vitis vinifera] | 0.964 | 0.582 | 0.782 | 1e-163 | |
| 118488056 | 357 | unknown [Populus trichocarpa] | 0.964 | 0.997 | 0.770 | 1e-161 | |
| 356499540 | 355 | PREDICTED: uncharacterized protein LOC10 | 0.956 | 0.994 | 0.745 | 1e-156 | |
| 255646111 | 355 | unknown [Glycine max] | 0.956 | 0.994 | 0.742 | 1e-156 | |
| 449520625 | 368 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.991 | 0.730 | 1e-154 | |
| 356559649 | 355 | PREDICTED: uncharacterized protein LOC10 | 0.953 | 0.991 | 0.729 | 1e-154 | |
| 357497595 | 352 | hypothetical protein MTR_6g036750 [Medic | 0.948 | 0.994 | 0.691 | 1e-143 | |
| 224066670 | 308 | predicted protein [Populus trichocarpa] | 0.831 | 0.996 | 0.772 | 1e-138 | |
| 115441265 | 361 | Os01g0867200 [Oryza sativa Japonica Grou | 0.953 | 0.975 | 0.639 | 1e-135 |
| >gi|225460664|ref|XP_002267235.1| PREDICTED: uncharacterized protein LOC100252073 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/368 (77%), Positives = 322/368 (87%), Gaps = 3/368 (0%)
Query: 3 VLEAKSLRKAEVPLSLIENPSPGNIQCTRLALHVNEDGCSCFVYIASGCHLYKLQVMMDD 62
+LEAKSLRKA V SL+ENPS N+Q TRLALHV+ G SC VYIASGC +Y +Q+ M+D
Sbjct: 1 MLEAKSLRKAVVAPSLLENPSAANLQSTRLALHVDGGGSSCRVYIASGCSIYSVQISMED 60
Query: 63 WFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIV 122
V++GK+SLLIP VMDSS++NRCPHRSE+QSI LAET+S ++LGSVDSYGHLIV
Sbjct: 61 SLVNKGKESLLIPVSAQVMDSSLVNRCPHRSEIQSIVLAETESPDCLILGSVDSYGHLIV 120
Query: 123 SKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH 182
S+LD S KDV+R+T SVLP+DCGVGEGSW+GLCFSPSQWSMAAVARSF KSIDVYDQDIH
Sbjct: 121 SQLDPSSKDVNRVTLSVLPRDCGVGEGSWAGLCFSPSQWSMAAVARSFCKSIDVYDQDIH 180
Query: 183 LRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241
LRTLRTLWYPSSL+F+QNLS NG ++LAVTEGCQLTIWDLRMKENGGC+HRICG +G
Sbjct: 181 LRTLRTLWYPSSLDFMQNLS--NGNERSILAVTEGCQLTIWDLRMKENGGCVHRICGPLG 238
Query: 242 DILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYV 301
DI YAV SSSTG+IAV GADRTVTIYDPRRWSALSRWVHCSKYEITGL+FSS D +YIY+
Sbjct: 239 DIFYAVTSSSTGSIAVGGADRTVTIYDPRRWSALSRWVHCSKYEITGLAFSSSDPDYIYI 298
Query: 302 QGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEI 361
QGVDYEVFCGQW E+ KVF+FRGDSNWLGFSKC NRDVLGGW DSGSIFVADV AKEN++
Sbjct: 299 QGVDYEVFCGQWNENKKVFSFRGDSNWLGFSKCPNRDVLGGWCDSGSIFVADVEAKENKV 358
Query: 362 SALKGLVN 369
AL+G N
Sbjct: 359 DALEGSPN 366
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081181|emb|CBI18207.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 281/359 (78%), Positives = 316/359 (88%), Gaps = 3/359 (0%)
Query: 3 VLEAKSLRKAEVPLSLIENPSPGNIQCTRLALHVNEDGCSCFVYIASGCHLYKLQVMMDD 62
+LEAKSLRKA V SL+ENPS N+Q TRLALHV+ G SC VYIASGC +Y +Q+ M+D
Sbjct: 1 MLEAKSLRKAVVAPSLLENPSAANLQSTRLALHVDGGGSSCRVYIASGCSIYSVQISMED 60
Query: 63 WFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIV 122
V++GK+SLLIP VMDSS++NRCPHRSE+QSI LAET+S ++LGSVDSYGHLIV
Sbjct: 61 SLVNKGKESLLIPVSAQVMDSSLVNRCPHRSEIQSIVLAETESPDCLILGSVDSYGHLIV 120
Query: 123 SKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH 182
S+LD S KDV+R+T SVLP+DCGVGEGSW+GLCFSPSQWSMAAVARSF KSIDVYDQDIH
Sbjct: 121 SQLDPSSKDVNRVTLSVLPRDCGVGEGSWAGLCFSPSQWSMAAVARSFCKSIDVYDQDIH 180
Query: 183 LRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241
LRTLRTLWYPSSL+F+QNLS NG ++LAVTEGCQLTIWDLRMKENGGC+HRICG +G
Sbjct: 181 LRTLRTLWYPSSLDFMQNLS--NGNERSILAVTEGCQLTIWDLRMKENGGCVHRICGPLG 238
Query: 242 DILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYV 301
DI YAV SSSTG+IAV GADRTVTIYDPRRWSALSRWVHCSKYEITGL+FSS D +YIY+
Sbjct: 239 DIFYAVTSSSTGSIAVGGADRTVTIYDPRRWSALSRWVHCSKYEITGLAFSSSDPDYIYI 298
Query: 302 QGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENE 360
QGVDYEVFCGQW E+ KVF+FRGDSNWLGFSKC NRDVLGGW DSGSIFVADV AKEN+
Sbjct: 299 QGVDYEVFCGQWNENKKVFSFRGDSNWLGFSKCPNRDVLGGWCDSGSIFVADVEAKENK 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118488056|gb|ABK95848.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 275/357 (77%), Positives = 313/357 (87%), Gaps = 1/357 (0%)
Query: 2 VVLEAKSLRKAEVPLSLIENPSPGNIQCTRLALHVNEDGCSCFVYIASGCHLYKLQVMMD 61
+VLE +SLRKA VP +LIENPSPGN+Q TRLALHVNEDG SC VYIASGCH+YKL + MD
Sbjct: 1 MVLEVRSLRKAVVPSTLIENPSPGNLQSTRLALHVNEDGSSCLVYIASGCHVYKLLIPMD 60
Query: 62 DWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLI 121
+ VSEGK+SLLIP QT VMDSS++NRCPHRSE+QSI L+ET+S G++VLGSVD YGHLI
Sbjct: 61 NSSVSEGKESLLIPVQTQVMDSSLVNRCPHRSEIQSIVLSETESPGHLVLGSVDGYGHLI 120
Query: 122 VSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI 181
VS+LDTSG D+D+ TYSVLP+D GVGE SW+GLCFS SQWSMAAV RSF KSIDVYDQDI
Sbjct: 121 VSRLDTSGNDIDQRTYSVLPRDSGVGESSWAGLCFSRSQWSMAAVTRSFCKSIDVYDQDI 180
Query: 182 HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241
H+RTLRTLWYPSSLNF++N S ++LAV EGCQLT+WDLRMKENGGCL RI GS+G
Sbjct: 181 HVRTLRTLWYPSSLNFLEN-SGNGSADSILAVAEGCQLTLWDLRMKENGGCLRRISGSLG 239
Query: 242 DILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYV 301
DI YAVCSSSTGN+AV GADRTVTIYDPRRWS ++RWVHCSKYEITGL+FSS+D +YIY+
Sbjct: 240 DIFYAVCSSSTGNVAVGGADRTVTIYDPRRWSPITRWVHCSKYEITGLAFSSLDPDYIYI 299
Query: 302 QGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358
QGVDYEV CGQ +E KVF+FRGDSNWLGFSKC NRDV+GGW DSGSIF+ADV KE
Sbjct: 300 QGVDYEVLCGQRKECEKVFSFRGDSNWLGFSKCCNRDVVGGWCDSGSIFMADVGVKE 356
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499540|ref|XP_003518597.1| PREDICTED: uncharacterized protein LOC100798984 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust.
Identities = 264/354 (74%), Positives = 306/354 (86%), Gaps = 1/354 (0%)
Query: 3 VLEAKSLRKAEVPLSLIENPSPGNIQCTRLALHVNEDGCSCFVYIASGCHLYKLQVMMDD 62
+LEAK L+KA VP +LIE+PSPG++QCTRLAL V ED SCFVYIASG H+YKL + + +
Sbjct: 1 MLEAKCLKKAVVPSTLIEDPSPGSLQCTRLALRVCEDPSSCFVYIASGPHIYKLHIALGE 60
Query: 63 WFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIV 122
VSEGKDSLLIPE T ++ SS+LNRCPHRSE+QSIALAE + GY++LGSVDS+GHLIV
Sbjct: 61 SSVSEGKDSLLIPEHTEIIASSLLNRCPHRSEIQSIALAEVEGCGYILLGSVDSHGHLIV 120
Query: 123 SKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH 182
SKLD SG+DVD+LTYS LP D G+GEGSWSGLCF P+QWSM VARSF KSIDVYDQDIH
Sbjct: 121 SKLDASGEDVDKLTYSALPHDNGIGEGSWSGLCFCPNQWSMTVVARSFCKSIDVYDQDIH 180
Query: 183 LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242
+R+LR LWYP+SLNF+QN N P LA+TEG QLT WDLRMKENGGC+HRICGS GD
Sbjct: 181 IRSLRPLWYPTSLNFLQNGVNGNQSPT-LAITEGSQLTTWDLRMKENGGCVHRICGSPGD 239
Query: 243 ILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302
I YAVCSSS GN+AV GADRTVTIYDPRRWSALSR VHCSKYEITGL+FS+ID + IY+Q
Sbjct: 240 IFYAVCSSSNGNVAVGGADRTVTIYDPRRWSALSRLVHCSKYEITGLAFSTIDPDCIYIQ 299
Query: 303 GVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356
GVDYEVFCGQW+E++K+F+FRGDSNWLGFSKCS++DVL GW DSGSIF+ADV +
Sbjct: 300 GVDYEVFCGQWKENNKIFSFRGDSNWLGFSKCSDKDVLAGWCDSGSIFIADVAS 353
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255646111|gb|ACU23542.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust.
Identities = 263/354 (74%), Positives = 306/354 (86%), Gaps = 1/354 (0%)
Query: 3 VLEAKSLRKAEVPLSLIENPSPGNIQCTRLALHVNEDGCSCFVYIASGCHLYKLQVMMDD 62
+LEAK L+KA VP +LIE+PSPG++QCTRLAL + ED SCFVYIASG H+YKL + + +
Sbjct: 1 MLEAKCLKKAVVPSTLIEDPSPGSLQCTRLALRICEDPSSCFVYIASGPHIYKLHIALGE 60
Query: 63 WFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIV 122
VSEGKDSLLIPE T ++ SS+LNRCPHRSE+QSIALAE + GY++LGSVDS+GHLIV
Sbjct: 61 SSVSEGKDSLLIPEHTEIIASSLLNRCPHRSEIQSIALAEVEGCGYILLGSVDSHGHLIV 120
Query: 123 SKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH 182
SKLD SG+DVD+LTYS LP D G+GEGSWSGLCF P+QWSM VARSF KSIDVYDQDIH
Sbjct: 121 SKLDASGEDVDKLTYSALPHDNGIGEGSWSGLCFCPNQWSMTVVARSFCKSIDVYDQDIH 180
Query: 183 LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242
+R+LR LWYP+SLNF+QN N P LA+TEG QLT WDLRMKENGGC+HRICGS GD
Sbjct: 181 IRSLRPLWYPTSLNFLQNGVNGNQSPT-LAITEGSQLTTWDLRMKENGGCVHRICGSPGD 239
Query: 243 ILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302
I YAVCSSS GN+AV GADRTVTIYDPRRWSALSR VHCSKYEITGL+FS+ID + IY+Q
Sbjct: 240 IFYAVCSSSNGNVAVGGADRTVTIYDPRRWSALSRLVHCSKYEITGLAFSTIDPDCIYIQ 299
Query: 303 GVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356
GVDYEVFCGQW+E++K+F+FRGDSNWLGFSKCS++DVL GW DSGSIF+ADV +
Sbjct: 300 GVDYEVFCGQWKENNKIFSFRGDSNWLGFSKCSDKDVLAGWCDSGSIFIADVAS 353
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520625|ref|XP_004167334.1| PREDICTED: uncharacterized protein LOC101229546 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 268/367 (73%), Positives = 309/367 (84%), Gaps = 2/367 (0%)
Query: 3 VLEAKSLRKAEVPLSLIENPSPGNIQCTRLALHVNEDGCSCFVYIASGCHLYKLQVMMDD 62
+L+AK LRKA VP LI+NPSPGNIQ TRLALHV+ DG SC+V+IASG ++KLQ+ MD+
Sbjct: 1 MLKAKGLRKAVVPSILIDNPSPGNIQPTRLALHVSPDGSSCWVFIASGSRVFKLQISMDE 60
Query: 63 WFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIV 122
V EGKDSLLIP QT V+DS +LNRCPHRSE+QS+ LAE DSS +LG+VDSYGHLIV
Sbjct: 61 SSVLEGKDSLLIPVQTKVLDSLLLNRCPHRSEIQSLVLAEVDSSSDQLLGTVDSYGHLIV 120
Query: 123 SKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH 182
SKLD +GKD DR TYSVLP+D G+GEGSW+GLCFSPS+ S AAVA SF K++DVYDQD+H
Sbjct: 121 SKLDATGKDADRFTYSVLPRDSGLGEGSWAGLCFSPSELSTAAVAHSFGKTVDVYDQDVH 180
Query: 183 LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242
+RTLRTL YP++L F+QN S NG ++LAVTEGCQLTIWDLRMKE GGCL RICGS+GD
Sbjct: 181 VRTLRTLLYPTALTFIQNPSFGNGS-SVLAVTEGCQLTIWDLRMKEKGGCLQRICGSIGD 239
Query: 243 ILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302
YAVC+SS GNIAV GADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDS+ IYVQ
Sbjct: 240 NFYAVCTSSNGNIAVGGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSDCIYVQ 299
Query: 303 GVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEIS 362
GVDYE FCGQW+E +K+F+ RGDSNWLGFSK S RDVLGGW DSGSIF+ DV +++E
Sbjct: 300 GVDYEAFCGQWKERNKLFSLRGDSNWLGFSKSSRRDVLGGWCDSGSIFLTDVT-RDSEED 358
Query: 363 ALKGLVN 369
G VN
Sbjct: 359 TSNGFVN 365
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559649|ref|XP_003548111.1| PREDICTED: uncharacterized protein LOC100803195 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust.
Identities = 259/355 (72%), Positives = 309/355 (87%), Gaps = 3/355 (0%)
Query: 3 VLEAKSLRKAEVPLSLIENPSPGNIQCTRLALHVNEDGCSCFVYIASGCHLYKLQVMMDD 62
+LEAK L+KA VP +LI++PSPG++QCTRLAL V+ED SCFVYIASG H+Y+L + + +
Sbjct: 1 MLEAKCLKKAVVPSTLIQDPSPGSLQCTRLALRVSEDQSSCFVYIASGPHIYRLHIALGE 60
Query: 63 WFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIV 122
+SEGKDSLLIPE T ++ SS+L+RCPHRSE+QSIALAE +S GY++LGSVDSYGHLIV
Sbjct: 61 SSISEGKDSLLIPEHTEIIASSLLSRCPHRSEIQSIALAEVESCGYVMLGSVDSYGHLIV 120
Query: 123 SKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH 182
SKLD SG++VD L +S LP D G+GEGSWSGLCF P+QWSM AVARSF K+ID+YDQDIH
Sbjct: 121 SKLDASGEEVDILAFSALPHDNGIGEGSWSGLCFCPNQWSMTAVARSFCKTIDIYDQDIH 180
Query: 183 LRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241
+RTLR LWYP+SLNF+Q+ VNG + LA+TEG QLT+WDLRMKENGGC+HRICG G
Sbjct: 181 IRTLRPLWYPTSLNFLQD--GVNGNQSSTLAITEGSQLTMWDLRMKENGGCVHRICGIPG 238
Query: 242 DILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYV 301
DI YAVCSSS GN+AV GADRTVTIYDPRRWSALSRWVHCSKYEITGL+FS+ID + IY+
Sbjct: 239 DIFYAVCSSSNGNVAVGGADRTVTIYDPRRWSALSRWVHCSKYEITGLAFSTIDPDCIYI 298
Query: 302 QGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356
QGVDYEVFCG+W+ES+K F+FRGDSNWLGFSKCS++DVL GW DSGSIF+ADV +
Sbjct: 299 QGVDYEVFCGKWKESNKTFSFRGDSNWLGFSKCSDKDVLAGWCDSGSIFIADVAS 353
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357497595|ref|XP_003619086.1| hypothetical protein MTR_6g036750 [Medicago truncatula] gi|355494101|gb|AES75304.1| hypothetical protein MTR_6g036750 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/353 (69%), Positives = 296/353 (83%), Gaps = 3/353 (0%)
Query: 3 VLEAKSLRKAEVPLSLIENPSPGNIQCTRLALHVNEDGCSCFVYIASGCHLYKLQVMMDD 62
+LE L+KA +P +LI+NPSPG IQ TRLALHV + C++YIASG ++YKLQ+ +
Sbjct: 1 MLEPNCLKKAVIPSTLIKNPSPGTIQSTRLALHVTQLRHYCYLYIASGSNIYKLQIALQG 60
Query: 63 WFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIV 122
VS+GKDSLLIP T V+D S + RCPHRSE+QSI LA+ +S GY +LGSVDSYGHLIV
Sbjct: 61 TSVSKGKDSLLIPLSTEVIDPSRVKRCPHRSEIQSIVLADAESLGYYLLGSVDSYGHLIV 120
Query: 123 SKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH 182
SKLD SG+ +D LTYS LP D G+GEGSW+GL FSP Q SMAAVAR F K+ID++DQD+H
Sbjct: 121 SKLDASGRGIDMLTYSALPPDNGIGEGSWAGLSFSPYQISMAAVARGFCKTIDIFDQDMH 180
Query: 183 LRTLRTLWYPSSLNFVQNLSPVNGG-PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241
+R LR LW P+S++FVQN+ VNG ++LA+TEG QLT+WDLR+KENGGC+HRI G+ G
Sbjct: 181 VRRLRPLWDPTSVSFVQNV--VNGDRSSLLAITEGSQLTMWDLRVKENGGCVHRISGTPG 238
Query: 242 DILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYV 301
D LY+VCSSSTGNIAV G DRTVTIYDPRRWS+LSRWVHCSK+EITGL+FS++D +YIY+
Sbjct: 239 DTLYSVCSSSTGNIAVGGVDRTVTIYDPRRWSSLSRWVHCSKFEITGLAFSTVDPDYIYI 298
Query: 302 QGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADV 354
QGVDYEVFCGQW+E +K+F+FRGDSNWLGFSKCSN+DVLGGW DSGSIFV DV
Sbjct: 299 QGVDYEVFCGQWKERNKLFSFRGDSNWLGFSKCSNKDVLGGWCDSGSIFVVDV 351
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224066670|ref|XP_002302177.1| predicted protein [Populus trichocarpa] gi|222843903|gb|EEE81450.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/308 (77%), Positives = 272/308 (88%), Gaps = 1/308 (0%)
Query: 2 VVLEAKSLRKAEVPLSLIENPSPGNIQCTRLALHVNEDGCSCFVYIASGCHLYKLQVMMD 61
+VLE +SLRKA VP +LIENPSPGN+Q TRLALHVNEDG SC VYIASGCH+YKL + MD
Sbjct: 1 MVLEVRSLRKAVVPSTLIENPSPGNLQSTRLALHVNEDGSSCLVYIASGCHVYKLLIPMD 60
Query: 62 DWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLI 121
+ VSEGK+SLLIP QT VMDSS++NRCPHRSE+QSI L+ET+S G++VLGSVD YGHLI
Sbjct: 61 NSSVSEGKESLLIPVQTQVMDSSLVNRCPHRSEIQSIVLSETESPGHLVLGSVDGYGHLI 120
Query: 122 VSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI 181
VS+LDTSG D+D+ TYSVLP+D GVGE SW+GLCFS SQWSMAAVARSF KSIDVYDQDI
Sbjct: 121 VSRLDTSGNDIDQRTYSVLPRDSGVGESSWAGLCFSRSQWSMAAVARSFCKSIDVYDQDI 180
Query: 182 HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241
H+RTLRTLWYPSSLNF++N S ++LAV EGCQLT+WDLRMKENGGCL RI GS+G
Sbjct: 181 HVRTLRTLWYPSSLNFLEN-SGNGSADSILAVAEGCQLTLWDLRMKENGGCLRRISGSLG 239
Query: 242 DILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYV 301
DI YAVCSSSTGN+AV GADRTVTIYDPRRWS ++RWVHCSKYEITGL+FSS+D +YIY+
Sbjct: 240 DIFYAVCSSSTGNVAVGGADRTVTIYDPRRWSPITRWVHCSKYEITGLAFSSLDPDYIYI 299
Query: 302 QGVDYEVF 309
QGVDYEV
Sbjct: 300 QGVDYEVI 307
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115441265|ref|NP_001044912.1| Os01g0867200 [Oryza sativa Japonica Group] gi|56784763|dbj|BAD81984.1| unknown protein [Oryza sativa Japonica Group] gi|56785207|dbj|BAD81925.1| unknown protein [Oryza sativa Japonica Group] gi|113534443|dbj|BAF06826.1| Os01g0867200 [Oryza sativa Japonica Group] gi|215715223|dbj|BAG94974.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 225/352 (63%), Positives = 282/352 (80%)
Query: 3 VLEAKSLRKAEVPLSLIENPSPGNIQCTRLALHVNEDGCSCFVYIASGCHLYKLQVMMDD 62
+L +SLRKA VP SL+ +PSPG++Q TRLA+HVN G SC Y+ASGC +YK+++ M+
Sbjct: 1 MLAPRSLRKAAVPPSLLSDPSPGSLQPTRLAVHVNAAGSSCSAYLASGCRVYKIEIAMEG 60
Query: 63 WFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIV 122
+S+GK+SLLIP V+ SS+++RCPHRSE+QS+ LAE + G ++LG+VDSYGHLIV
Sbjct: 61 EMLSKGKESLLIPINAEVISSSVVDRCPHRSEIQSVVLAEGEGDGCLILGTVDSYGHLIV 120
Query: 123 SKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH 182
S+LDT D+DR +YSV P+DCGVGEGSW+GLCFSP S AVAR K ID+YDQDIH
Sbjct: 121 SRLDTVADDIDRASYSVPPRDCGVGEGSWAGLCFSPMHQSTVAVARELCKCIDIYDQDIH 180
Query: 183 LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242
+R+LRTLWYPSS +F Q + VN +MLA+ EG QL+IWDLR NGGC+HRI G +G
Sbjct: 181 VRSLRTLWYPSSFSFAQCMPQVNESGSMLAIAEGSQLSIWDLRTSNNGGCIHRISGPIGG 240
Query: 243 ILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302
I+Y++CSS +G IAV G DRTVTIYDPRRWSALSRWV CSKYEITGLSFSS+D ++IYVQ
Sbjct: 241 IIYSLCSSPSGPIAVGGTDRTVTIYDPRRWSALSRWVGCSKYEITGLSFSSVDESFIYVQ 300
Query: 303 GVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADV 354
GVDYE+ CG W+ + + F+FRGDSNWLGFSKC+N DV+ GW +SGS+FVADV
Sbjct: 301 GVDYEITCGLWKGNERAFSFRGDSNWLGFSKCANTDVVAGWCESGSVFVADV 352
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 369 | ||||||
| GENEDB_PFALCIPARUM|PFA0520c | 446 | PFA0520c "chromatin assembly f | 0.552 | 0.457 | 0.230 | 0.00015 | |
| UNIPROTKB|Q8I238 | 446 | PFA_0520c "Chromatin assembly | 0.552 | 0.457 | 0.230 | 0.00015 |
| GENEDB_PFALCIPARUM|PFA0520c PFA0520c "chromatin assembly factor 1 protein WD40 domain, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 50/217 (23%), Positives = 98/217 (45%)
Query: 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGV 146
++ H EV I + ++V +VD HL D + ++ + + P+ V
Sbjct: 147 SKIAHTGEVNRIKFVPLEKKNFVVTKAVDGNVHLF----DINKHKIETVDDKMNPEVSFV 202
Query: 147 GEGSWS-GLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPV 204
G S GL F P + + A I+VYD + ++ +T++ + + V ++SP
Sbjct: 203 GNQSDGFGLDFQPIKKYILTCAND--GLINVYDYNTLNTKTVQPFYKVQYKSPVNDISPT 260
Query: 205 NGGPNM-LAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADR- 262
N PN+ LA + + I+D R+K N + G + ++ TG A +G+D
Sbjct: 261 ND-PNLILACADNGYILIFDFRIKSNEPAQQTL-GQQVPVNTVALNTFTGLFA-SGSDNG 317
Query: 263 TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYI 299
+ ++D +++ ++ K I L+FS D++ +
Sbjct: 318 KIKVWDLKKFHEPQHIINAHKEAIIRLNFSPNDASIL 354
|
|
| UNIPROTKB|Q8I238 PFA_0520c "Chromatin assembly factor 1 protein WD40 domain, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 50/217 (23%), Positives = 98/217 (45%)
Query: 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGV 146
++ H EV I + ++V +VD HL D + ++ + + P+ V
Sbjct: 147 SKIAHTGEVNRIKFVPLEKKNFVVTKAVDGNVHLF----DINKHKIETVDDKMNPEVSFV 202
Query: 147 GEGSWS-GLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPV 204
G S GL F P + + A I+VYD + ++ +T++ + + V ++SP
Sbjct: 203 GNQSDGFGLDFQPIKKYILTCAND--GLINVYDYNTLNTKTVQPFYKVQYKSPVNDISPT 260
Query: 205 NGGPNM-LAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADR- 262
N PN+ LA + + I+D R+K N + G + ++ TG A +G+D
Sbjct: 261 ND-PNLILACADNGYILIFDFRIKSNEPAQQTL-GQQVPVNTVALNTFTGLFA-SGSDNG 317
Query: 263 TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYI 299
+ ++D +++ ++ K I L+FS D++ +
Sbjct: 318 KIKVWDLKKFHEPQHIINAHKEAIIRLNFSPNDASIL 354
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 369 369 0.00085 117 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 621 (66 KB)
Total size of DFA: 278 KB (2144 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.12u 0.14s 29.26t Elapsed: 00:00:01
Total cpu time: 29.12u 0.14s 29.26t Elapsed: 00:00:01
Start: Mon May 20 19:41:28 2013 End: Mon May 20 19:41:29 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 369 | |||
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-04 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.7 bits (104), Expect = 6e-05
Identities = 59/261 (22%), Positives = 100/261 (38%), Gaps = 22/261 (8%)
Query: 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGS 150
H S V +AL+ D + ++L S G + + L T GK + L S
Sbjct: 108 HDSSVSKLALSSPDGN-SILLASSSLDGTVKLWDLSTPGKLIRTLEGH---------SES 157
Query: 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNM 210
+ L FSP + A S +I ++D + L TL + SP +GG +
Sbjct: 158 VTSLAFSPD-GKLLASGSSLDGTIKLWD-LRTGKPLSTLAGHTDPVSSLAFSP-DGGLLI 214
Query: 211 LAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPR 270
+ + + +WDL G L D + + S +A +D T+ ++D R
Sbjct: 215 ASGSSDGTIRLWDLS---TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLR 271
Query: 271 RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD-----YEVFCGQWRESSKVFAFRGD 325
S+L R + + ++FS D + D +++ G+ S + G
Sbjct: 272 SSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP 330
Query: 326 SNWLGFSKCSNRDVLGGWSDS 346
+ L FS + V GG D
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDG 351
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 12/154 (7%)
Query: 205 NGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTV 264
G + + + +WDL E G L + G G + S+ +A +D+T+
Sbjct: 19 PDGKLLATGSGDGTIKVWDL---ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTI 75
Query: 265 TIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323
++D + H S ++ ++FS D + D + + R
Sbjct: 76 RLWDLETGECVRTLTGHTS--YVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLR 132
Query: 324 GDSNW---LGFSKCSNRDVLGGWSDSGSIFVADV 354
G ++W + FS V D G+I + D+
Sbjct: 133 GHTDWVNSVAFSPDGTF-VASSSQD-GTIKLWDL 164
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 369 | |||
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.98 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.94 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.94 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.93 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.92 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.91 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.91 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.91 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.91 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.91 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.9 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.89 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.89 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.89 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.89 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.89 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.88 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.88 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.87 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.87 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.87 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.86 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.86 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.85 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.84 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.84 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.84 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.84 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.83 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.83 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.83 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.82 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.82 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.81 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.81 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.81 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.8 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.8 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.8 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.79 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.78 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.78 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.77 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.76 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.76 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.75 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.75 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.72 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.72 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.7 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.69 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.69 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.68 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.67 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.66 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.66 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.66 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.66 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.65 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.65 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.64 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.64 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.61 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.59 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.59 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.57 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.56 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.56 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.55 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.53 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.53 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.52 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.5 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.49 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.49 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.46 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.45 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.44 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.42 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.41 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.41 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.41 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.38 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.38 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.35 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.35 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.33 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.32 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.29 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.29 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.29 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.28 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.26 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.25 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.22 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.22 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.2 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.2 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.17 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.16 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.15 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.12 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.12 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.11 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.1 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.1 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.09 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.08 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.08 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.08 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.07 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.05 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.03 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.02 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.02 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.01 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.01 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.0 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.96 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.96 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.95 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.93 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.93 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.92 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.92 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.91 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.91 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.88 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.86 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.85 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.85 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.84 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.83 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.83 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.77 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.77 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.76 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.75 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.72 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.7 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.68 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.64 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.64 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.63 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.63 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.61 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.58 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.55 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.54 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.53 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.52 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.42 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.41 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.41 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.38 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.33 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.31 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.29 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.29 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.25 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.23 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.22 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.21 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.2 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.13 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.13 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.1 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.08 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.07 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.06 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.04 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.04 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.02 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.01 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.97 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.95 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.9 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.88 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.82 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.8 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.79 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.74 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.73 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.71 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.7 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.67 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.67 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.66 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.61 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.61 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.59 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.57 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.48 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.44 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.37 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.36 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.36 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.36 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.35 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.31 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.31 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.28 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.26 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.21 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.16 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.09 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.02 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.0 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.9 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.82 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.78 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.75 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.64 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.57 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.56 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.52 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.5 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.43 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.41 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.4 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.37 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.36 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.22 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.13 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.11 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.11 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.08 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.08 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.03 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.94 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.7 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 95.66 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.62 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.61 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.53 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.51 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.41 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.19 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.13 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.62 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.47 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.41 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 94.25 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 94.2 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 94.16 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.11 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.02 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.91 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.8 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.68 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 93.22 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.06 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.06 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 93.05 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 92.97 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.45 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 92.36 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.3 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 92.27 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 92.13 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.08 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 91.94 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 91.53 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 91.16 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.95 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 90.9 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 90.39 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 89.84 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 89.51 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.23 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 88.88 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 88.84 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 88.74 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 88.51 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 88.34 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 88.2 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 87.93 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 87.63 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 87.6 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 87.49 | |
| PRK10115 | 686 | protease 2; Provisional | 87.49 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 87.43 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 87.37 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 87.36 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 87.29 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 87.2 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 86.73 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 86.65 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 85.39 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 85.15 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 84.74 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 84.07 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 83.98 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 83.78 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 83.49 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 82.35 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 81.07 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 80.72 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 80.06 |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=287.53 Aligned_cols=325 Identities=15% Similarity=0.137 Sum_probs=241.4
Q ss_pred ceeeeecCCccccCCCCCccccceeEEEecCCC-ceEEEEEEeCCeEEEEEEeCCchhh---hcCCCcccccc---Cccc
Q 017601 8 SLRKAEVPLSLIENPSPGNIQCTRLALHVNEDG-CSCFVYIASGCHLYKLQVMMDDWFV---SEGKDSLLIPE---QTPV 80 (369)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~as~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~ 80 (369)
||--+=+|-.. .+..+++..|||+++++++| ++|+++|| .|.+|.... ..+.+.-.-.. ....
T Consensus 43 SLt~qWlPd~~--~~~~~~~~~~rliLGthTs~~~~n~L~iA--------~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~ 112 (422)
T KOG0264|consen 43 SLTVQWLPDVT--KPEEKDFSKQRLILGTHTSGSEQNYLVIA--------SVQLPTDDAQFEDKHYDEERGEFGGFGAVS 112 (422)
T ss_pred ceEEEEcCCcc--cccCCCceeEEEEEEeecCCCCccEEEEE--------eecCCCcccccccccccccccccCCccccc
Confidence 44444445433 23567788899999999955 99999999 656652221 11111000000 0112
Q ss_pred ccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCC--CCCCCCCeeEEEECC
Q 017601 81 MDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQD--CGVGEGSWSGLCFSP 158 (369)
Q Consensus 81 ~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~p 158 (369)
....+..++.|.++|++++++|+. ..++|+....+.++|||+.+......... ...|.. .++..+|+ +|+|++
T Consensus 113 ~~v~i~~~i~h~gEVnRaRymPQn---p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-~~~Pdl~L~gH~~eg~-glsWn~ 187 (422)
T KOG0264|consen 113 GKVEISQKINHDGEVNRARYMPQN---PNIVATKTSSGDVYVFDYTKHPSKPKASG-ECRPDLRLKGHEKEGY-GLSWNR 187 (422)
T ss_pred cceEEEEeccCCccchhhhhCCCC---CcEEEecCCCCCEEEEEeccCCCcccccc-cCCCceEEEeeccccc-cccccc
Confidence 334555578999999999999985 78999999999999999998743222110 111111 12223355 699999
Q ss_pred CCceeEEEEecccceEEEEeCCcc------eEEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc
Q 017601 159 SQWSMAAVARSFSKSIDVYDQDIH------LRTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG 231 (369)
Q Consensus 159 ~~~~~~a~~~s~d~~i~lwd~~~~------~~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~ 231 (369)
.....++++ +.|++|++||+... +.... ...|...++.+.+++.. ...|.++++|+.+.|||+|++ ..+
T Consensus 188 ~~~g~Lls~-~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h--~~lF~sv~dd~~L~iwD~R~~-~~~ 263 (422)
T KOG0264|consen 188 QQEGTLLSG-SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH--EDLFGSVGDDGKLMIWDTRSN-TSK 263 (422)
T ss_pred ccceeEeec-cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc--hhhheeecCCCeEEEEEcCCC-CCC
Confidence 999999998 99999999998521 22222 22366677777777754 468899999999999999964 235
Q ss_pred eeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 232 CLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 232 ~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
+.+....| ...|+|++|+|-+ .||+||.|++|+|||+|+ .++++++.+| ++.|..|.|||.....|||++.|+++
T Consensus 264 ~~~~~~ah-~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg~D~rl 341 (422)
T KOG0264|consen 264 PSHSVKAH-SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSGTDRRL 341 (422)
T ss_pred Cccccccc-CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecccCCcE
Confidence 55555555 6999999999998 999999999999999999 6789999999 99999999999889999999999999
Q ss_pred EEEECcC--------------CceeEEEEcCCCeeeeeE---cC-CCCEEEEEeCCCcEEEEECC
Q 017601 309 FCGQWRE--------------SSKVFAFRGDSNWLGFSK---CS-NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 309 ~vwd~~~--------------~~~~~~~~g~~~~~~~~~---~~-d~~~l~sgs~dg~I~iWd~~ 355 (369)
.+||+.. .+++|.+.||. ..+.. +| +...|+|.++|+.++||++.
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~--~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT--AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCcc--cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999965 36789999998 44433 44 77889999999999999987
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=279.34 Aligned_cols=261 Identities=16% Similarity=0.175 Sum_probs=210.2
Q ss_pred CccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCC
Q 017601 70 DSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEG 149 (369)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (369)
.|....+..+.. .....+.+|.+.|-++.|+|.. +..-+|+++.||.+.+|++++.. .+ ..+.+|...
T Consensus 196 sG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~e~-~l----~~l~gH~~R---- 263 (459)
T KOG0272|consen 196 SGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQET-PL----QDLEGHLAR---- 263 (459)
T ss_pred CCceeEeecCCc-ceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCCCc-ch----hhhhcchhh----
Confidence 444433343344 2445578999999999999972 24789999999999999998641 11 122223222
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN 229 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~ 229 (369)
+..++|+| ++.+++++ |+|.+.+|||+......+....|...+..+.+ .+||..+++++-|..-+|||+|++
T Consensus 264 -Vs~VafHP-sG~~L~Ta-sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf---~~DGSL~~tGGlD~~~RvWDlRtg-- 335 (459)
T KOG0272|consen 264 -VSRVAFHP-SGKFLGTA-SFDSTWRLWDLETKSELLLQEGHSKGVFSIAF---QPDGSLAATGGLDSLGRVWDLRTG-- 335 (459)
T ss_pred -heeeeecC-CCceeeec-ccccchhhcccccchhhHhhcccccccceeEe---cCCCceeeccCccchhheeecccC--
Confidence 44799999 45688888 99999999999765544444445544444443 346777777889999999999999
Q ss_pred CceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 230 GGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 230 ~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
.++..+.+| ..+|++|+|+|+| .|||||.|++++|||+|..+++.++.+| .+.|+.|.|+|..|.+|+|+|.|+++
T Consensus 336 -r~im~L~gH-~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 336 -RCIMFLAGH-IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH-SNLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred -cEEEEeccc-ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc-cchhhheEecccCCeEEEEcccCcce
Confidence 899999987 8999999999999 9999999999999999999999999999 99999999999789999999999999
Q ss_pred EEEECcCCceeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 309 FCGQWRESSKVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 309 ~vwd~~~~~~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
++|..++..+++.+.||.. ..++..++|+..|+|++.|++|++|.
T Consensus 413 kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999982 23334466999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=272.60 Aligned_cols=255 Identities=20% Similarity=0.204 Sum_probs=202.4
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+|.+.|-|++|+|++ ..|++++.+-++++||+.+. ...+.+..|.. -+.+++|+| +...||++
T Consensus 112 ~GH~e~Vl~~~fsp~g----~~l~tGsGD~TvR~WD~~Te-----Tp~~t~KgH~~-----WVlcvawsP-Dgk~iASG- 175 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTG----SRLVTGSGDTTVRLWDLDTE-----TPLFTCKGHKN-----WVLCVAWSP-DGKKIASG- 175 (480)
T ss_pred CCCCCcEEEEEecCCC----ceEEecCCCceEEeeccCCC-----CcceeecCCcc-----EEEEEEECC-Ccchhhcc-
Confidence 4899999999999984 79999999999999999876 22344444433 245899999 56688998
Q ss_pred cccceEEEEeCCcceEEEEee-eCCcceeeeccCCC--CCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 169 SFSKSIDVYDQDIHLRTLRTL-WYPSSLNFVQNLSP--VNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|++|++||...-....+.+ .|..-+..+.+.|. .|...+|++++.||.|+|||+..+ .++..+.+| +.+|+
T Consensus 176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~---~~~~~lsgH-T~~VT 251 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG---TCVRTLSGH-TASVT 251 (480)
T ss_pred ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc---eEEEEeccC-ccceE
Confidence 999999999964322222222 23334444444332 345668888999999999999988 899999988 89999
Q ss_pred EEEECCCCcEEEEeCCCcEEEEeCCCc-----------------------------------------------------
Q 017601 246 AVCSSSTGNIAVAGADRTVTIYDPRRW----------------------------------------------------- 272 (369)
Q Consensus 246 ~v~~sp~g~lasgs~D~~v~vwD~~~~----------------------------------------------------- 272 (369)
|++|--+|+|++||.|++|++|+...|
T Consensus 252 CvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 252 CVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 999998889999999999999986522
Q ss_pred --------------------------eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 273 --------------------------SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 273 --------------------------~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
+++..+.+| +..|+.+.||| |++++||+|.|+.|++||-++++.+.+|+||.
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 223344567 77899999999 99999999999999999999999999999998
Q ss_pred CeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 327 NWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 327 ~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
..+-. ++|.++|+|||.|.++++|++++++. ..-|.||.
T Consensus 410 --~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-~~DLpGh~ 451 (480)
T KOG0271|consen 410 --AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-KQDLPGHA 451 (480)
T ss_pred --ceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-cccCCCCC
Confidence 44433 55999999999999999999999875 45577764
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=268.65 Aligned_cols=255 Identities=14% Similarity=0.096 Sum_probs=208.0
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC-CceeEEEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS-QWSMAAVA 167 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~a~~ 167 (369)
.+-...|....|+.|+ ..+++++-.|.+.+|+...... ...+.+|... +.++.|+|. ++..+|+|
T Consensus 172 ~gd~rPis~~~fS~ds----~~laT~swsG~~kvW~~~~~~~-----~~~l~gH~~~-----v~~~~fhP~~~~~~lat~ 237 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDS----KHLATGSWSGLVKVWSVPQCNL-----LQTLRGHTSR-----VGAAVFHPVDSDLNLATA 237 (459)
T ss_pred ccCCCcceeeEeecCC----CeEEEeecCCceeEeecCCcce-----eEEEeccccc-----eeeEEEccCCCccceeee
Confidence 3567889999999984 7999999999999999986521 2233444433 338999997 36678998
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
+.|+++++|+.....-......|...+.-+.+ .|+|..|++++.|.+-+|||++++ ..+....+| ...|+++
T Consensus 238 -s~Dgtvklw~~~~e~~l~~l~gH~~RVs~Vaf---HPsG~~L~TasfD~tWRlWD~~tk---~ElL~QEGH-s~~v~~i 309 (459)
T KOG0272|consen 238 -SADGTVKLWKLSQETPLQDLEGHLARVSRVAF---HPSGKFLGTASFDSTWRLWDLETK---SELLLQEGH-SKGVFSI 309 (459)
T ss_pred -ccCCceeeeccCCCcchhhhhcchhhheeeee---cCCCceeeecccccchhhcccccc---hhhHhhccc-cccccee
Confidence 99999999988643211122234444555543 356889999999999999999998 666666666 6899999
Q ss_pred EECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 248 CSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
+|.||| ++++|+.|..-+|||+|++.++..|.+| ..+|.+|+|+| +|..|||||.|++++|||++..+++.++.+|+
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH-~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~ 387 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGH-IKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHS 387 (459)
T ss_pred EecCCCceeeccCccchhheeecccCcEEEEeccc-ccceeeEeECC-CceEEeecCCCCcEEEeeecccccceeccccc
Confidence 999999 9999999999999999999999999999 99999999999 99999999999999999999999999999999
Q ss_pred Ceee-eeEcC-CCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 327 NWLG-FSKCS-NRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 327 ~~~~-~~~~~-d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
+... +...+ .|.+|+|+|.|++++||...+.. .+..|.||-
T Consensus 388 nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~-~~ksLaGHe 430 (459)
T KOG0272|consen 388 NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS-PLKSLAGHE 430 (459)
T ss_pred chhhheEecccCCeEEEEcccCcceeeecCCCcc-cchhhcCCc
Confidence 6543 23355 78999999999999999988775 467787774
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=248.70 Aligned_cols=259 Identities=18% Similarity=0.182 Sum_probs=209.5
Q ss_pred ccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCce
Q 017601 83 SSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 83 ~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 162 (369)
..+..+.+|+++|+.+.|+|++ ..+|++..|-.|.+|++....+. ...+..|..+ +-++.|.+ +..
T Consensus 38 ap~m~l~gh~geI~~~~F~P~g----s~~aSgG~Dr~I~LWnv~gdceN----~~~lkgHsgA-----VM~l~~~~-d~s 103 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDG----SCFASGGSDRAIVLWNVYGDCEN----FWVLKGHSGA-----VMELHGMR-DGS 103 (338)
T ss_pred chhhhcCCCcceEEEEEECCCC----CeEeecCCcceEEEEeccccccc----eeeeccccce-----eEeeeecc-CCC
Confidence 3455688999999999999974 79999999999999998754221 2233445443 44799999 556
Q ss_pred eEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 163 MAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
.++++ +.|++|+.||.....+..+...|...++.+.....++ ..+.++++|++++|||+|+. .+++++... .
T Consensus 104 ~i~S~-gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~--~lv~SgsdD~t~kl~D~R~k---~~~~t~~~k--y 175 (338)
T KOG0265|consen 104 HILSC-GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGP--QLVCSGSDDGTLKLWDIRKK---EAIKTFENK--Y 175 (338)
T ss_pred EEEEe-cCCceEEEEecccceeeehhccccceeeecCccccCC--eEEEecCCCceEEEEeeccc---chhhccccc--e
Confidence 78888 8999999999864444333334556666666444433 34556788999999999998 788888766 8
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC----Cc
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE----SS 317 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~----~~ 317 (369)
++++++|..++ .+.+|+-|+.|++||+|+...++.+.|| .+.|+.+..+| +|.++++-++|.++++||++. .+
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred eEEEEEecccccceeeccccCceeeeccccCcceEEeecc-cCceeeEEecc-CCCccccccccceEEEEEecccCCCCc
Confidence 89999999999 9999999999999999999999999999 99999999999 999999999999999999987 57
Q ss_pred eeEEEEcCCCeeeeeE-------cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 318 KVFAFRGDSNWLGFSK-------CSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 318 ~~~~~~g~~~~~~~~~-------~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
++..|.||. .++++ ++++..+..||.|+.+++||....+ .+-.+.||.
T Consensus 254 ~v~if~g~~--hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~-~lyklpGh~ 308 (338)
T KOG0265|consen 254 CVKIFQGHI--HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR-ILYKLPGHY 308 (338)
T ss_pred eEEEeecch--hhhhhhcceeeccCCCCccccccccceEEEeeccccc-EEEEcCCcc
Confidence 799999987 44444 4599999999999999999997654 355577764
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=260.83 Aligned_cols=300 Identities=16% Similarity=0.157 Sum_probs=240.8
Q ss_pred cCCCCCccccceeEEEec-----CCCceEEEEEEeCCeEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccce
Q 017601 20 ENPSPGNIQCTRLALHVN-----EDGCSCFVYIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSE 94 (369)
Q Consensus 20 ~~~~~~~~~~~r~~~~~~-----~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~ 94 (369)
++|...++|++| +..++ |.| .|||||+..++++ +|..++..+..+-+...-.+.
T Consensus 47 ~~~~~~~iYtEH-~~~vtVAkySPsG----~yiASGD~sG~vR----------------IWdtt~~~hiLKnef~v~aG~ 105 (603)
T KOG0318|consen 47 DNPASVDIYTEH-AHQVTVAKYSPSG----FYIASGDVSGKVR----------------IWDTTQKEHILKNEFQVLAGP 105 (603)
T ss_pred CCccceeeeccc-cceeEEEEeCCCc----eEEeecCCcCcEE----------------EEeccCcceeeeeeeeecccc
Confidence 455667777777 43333 677 4889888777777 777777777777777788899
Q ss_pred eeEEEEeecCCCCceEEEE-E---ecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 95 VQSIALAETDSSGYMVLGS-V---DSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las-~---d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
|.+|+|++|+ ++|++ + .+.|++++||..+...++.++...+ .+++|.|..+.+++++ +.
T Consensus 106 I~Di~Wd~ds----~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~i------------ns~~~KpsRPfRi~T~-sd 168 (603)
T KOG0318|consen 106 IKDISWDFDS----KRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRI------------NSVDFKPSRPFRIATG-SD 168 (603)
T ss_pred cccceeCCCC----cEEEEEecCccceeEEEEecCCCccceeeccceeE------------eeeeccCCCceEEEec-cC
Confidence 9999999984 45544 4 4578899999988777777655543 4699999999999999 99
Q ss_pred cceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee---ccCCCcEEEE
Q 017601 171 SKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC---GSVGDILYAV 247 (369)
Q Consensus 171 d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~---~~~~~~v~~v 247 (369)
|++|.+|+.....+......|.. |+++..|+|||..+++++.|+++.|||-+++ ..+..+. .| .+.|+++
T Consensus 169 Dn~v~ffeGPPFKFk~s~r~Hsk---FV~~VRysPDG~~Fat~gsDgki~iyDGktg---e~vg~l~~~~aH-kGsIfal 241 (603)
T KOG0318|consen 169 DNTVAFFEGPPFKFKSSFREHSK---FVNCVRYSPDGSRFATAGSDGKIYIYDGKTG---EKVGELEDSDAH-KGSIFAL 241 (603)
T ss_pred CCeEEEeeCCCeeeeeccccccc---ceeeEEECCCCCeEEEecCCccEEEEcCCCc---cEEEEecCCCCc-cccEEEE
Confidence 99999999886655543333333 6666678889999999999999999999999 5565555 44 6899999
Q ss_pred EECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc--ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 248 CSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC--SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h--~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+|+||+ +++++|.|+++||||+.+.+++.+|.-- ..+....+.|.. ..|++.|.+|+|.+++......++.+.|
T Consensus 242 sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk---d~lItVSl~G~in~ln~~d~~~~~~i~G 318 (603)
T KOG0318|consen 242 SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK---DHLITVSLSGTINYLNPSDPSVLKVISG 318 (603)
T ss_pred EECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC---CeEEEEEcCcEEEEecccCCChhheecc
Confidence 999999 9999999999999999999999988733 125566777754 7899999999999999999889999999
Q ss_pred CCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCCC
Q 017601 325 DSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKENEISALKGLVN 369 (369)
Q Consensus 325 ~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~~ 369 (369)
|. .++.. ++|+.+|+|||.||.|.-|+..++.+.....++|.|
T Consensus 319 Hn--K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~n 364 (603)
T KOG0318|consen 319 HN--KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTN 364 (603)
T ss_pred cc--cceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccc
Confidence 99 56655 569999999999999999999999876555566654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=237.43 Aligned_cols=257 Identities=17% Similarity=0.136 Sum_probs=199.5
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|.++|..++..+.. ..++.+++.+..+.+|++...........+.+.+|... +..++.++ +++++.+
T Consensus 10 tl~gh~d~Vt~la~~~~~---~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~-----v~dv~~s~-dg~~alS 80 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKN---SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHF-----VSDVVLSS-DGNFALS 80 (315)
T ss_pred eecCCCceEEEEEeecCC---CceEEEcccceEEEEEEeccCccccCceeeeeeccceE-----ecceEEcc-CCceEEe
Confidence 367999999999998873 67999999999999999986532222222334444332 45789999 4556666
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC-CCcEE
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV-GDILY 245 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~-~~~v~ 245 (369)
+ |+|+++++||+.....+.+...|...+-.++ +++|+.++++++-|.+|++|++... +..++.... .+.|+
T Consensus 81 ~-swD~~lrlWDl~~g~~t~~f~GH~~dVlsva---~s~dn~qivSGSrDkTiklwnt~g~----ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 81 A-SWDGTLRLWDLATGESTRRFVGHTKDVLSVA---FSTDNRQIVSGSRDKTIKLWNTLGV----CKYTIHEDSHREWVS 152 (315)
T ss_pred c-cccceEEEEEecCCcEEEEEEecCCceEEEE---ecCCCceeecCCCcceeeeeeeccc----EEEEEecCCCcCcEE
Confidence 6 9999999999875444444444555555554 4567889999999999999998764 666655432 58899
Q ss_pred EEEECCC--C-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 246 AVCSSST--G-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 246 ~v~~sp~--g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
|++|+|+ . .|+++|+|++||+||+++.+..+.+.|| ...++.+++|| ||.++++|+.|+.+.+||++.++.++.+
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh-~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH-SGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc-cccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEec
Confidence 9999999 4 9999999999999999999999999999 99999999999 9999999999999999999999999999
Q ss_pred EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhc
Q 017601 323 RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISAL 364 (369)
Q Consensus 323 ~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l 364 (369)
.+......+..+|+.-.|+ ...+..|+|||++++.. ++.|
T Consensus 231 ~a~~~v~sl~fspnrywL~-~at~~sIkIwdl~~~~~-v~~l 270 (315)
T KOG0279|consen 231 EAFDIVNSLCFSPNRYWLC-AATATSIKIWDLESKAV-VEEL 270 (315)
T ss_pred cCCCeEeeEEecCCceeEe-eccCCceEEEeccchhh-hhhc
Confidence 7766444555566544444 44555699999998763 3433
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=250.34 Aligned_cols=282 Identities=13% Similarity=0.097 Sum_probs=214.3
Q ss_pred EEEEEeCCchhhhcC-CCccccccCcccccccccccCCccceeeEEEEeecCC-CCceEEEEEecCCcEEEEEecCCCCC
Q 017601 54 YKLQVMMDDWFVSEG-KDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDS-SGYMVLGSVDSYGHLIVSKLDTSGKD 131 (369)
Q Consensus 54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~-~~~~~las~d~~g~v~~~~~~~~~~~ 131 (369)
..++.++++.....| +++..+-++...+....-.+.+|+..|++|+|-|-.- ....++|+.+++|.++|||+..+
T Consensus 161 lcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~--- 237 (480)
T KOG0271|consen 161 LCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG--- 237 (480)
T ss_pred EEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc---
Confidence 344556666666444 4555544455555544455789999999999987431 23468999999999999999854
Q ss_pred CccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeeeCC-cceeee-----ccCCC
Q 017601 132 VDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYP-SSLNFV-----QNLSP 203 (369)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~-~~v~~~-----~~~~~ 203 (369)
...+.+.+|... ++++.|-- +++++++ |.|++|++|+.. ...+.++.+.|- ..+... ...+|
T Consensus 238 --~~~~~lsgHT~~-----VTCvrwGG--~gliySg-S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 238 --TCVRTLSGHTAS-----VTCVRWGG--EGLIYSG-SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF 307 (480)
T ss_pred --eEEEEeccCccc-----eEEEEEcC--CceEEec-CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence 223444555443 56898864 5688888 999999999864 344444432211 111110 01111
Q ss_pred CC-------------------------CCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEE
Q 017601 204 VN-------------------------GGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAV 257 (369)
Q Consensus 204 ~~-------------------------~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~las 257 (369)
.+ .+.+|+++++|.++.+|+..... +++.++.+| ..-|+.+.||||+ ++|+
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k--kpi~rmtgH-q~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK--KPITRMTGH-QALVNHVSFSPDGRYIAS 384 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc--cchhhhhch-hhheeeEEECCCccEEEE
Confidence 11 23469999999999999977543 688888877 7899999999999 9999
Q ss_pred EeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe-eeeeEcCC
Q 017601 258 AGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW-LGFSKCSN 336 (369)
Q Consensus 258 gs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d 336 (369)
||-|++|++||.++|+.+.+|.|| -..|+.++||. |.++|+|||.|.++++||+++.++.+.+.||..- -.+..++|
T Consensus 385 aSFDkSVkLW~g~tGk~lasfRGH-v~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD 462 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLASFRGH-VAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD 462 (480)
T ss_pred eecccceeeeeCCCcchhhhhhhc-cceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence 999999999999999999999999 99999999999 9999999999999999999999999999998721 23334789
Q ss_pred CCEEEEEeCCCcEEEEE
Q 017601 337 RDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 337 ~~~l~sgs~dg~I~iWd 353 (369)
|..+++|+.|..+++|.
T Consensus 463 G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 463 GQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceeecCCCceEEEeec
Confidence 99999999999999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=234.79 Aligned_cols=257 Identities=16% Similarity=0.181 Sum_probs=204.4
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+.+|.+.|+++.|++|+ ..+.|++.+|++.|||.-+..+ .+...++ ..-+-.+||+| ..+.+|
T Consensus 49 r~LkGH~~Ki~~~~ws~Ds----r~ivSaSqDGklIvWDs~TtnK---~haipl~-------s~WVMtCA~sP-Sg~~VA 113 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDS----RRIVSASQDGKLIVWDSFTTNK---VHAIPLP-------SSWVMTCAYSP-SGNFVA 113 (343)
T ss_pred EEecccccceeeeEecCCc----CeEEeeccCCeEEEEEcccccc---eeEEecC-------ceeEEEEEECC-CCCeEE
Confidence 3478999999999999984 7999999999999999876532 1111111 11233699999 456777
Q ss_pred EEecccceEEEEeCCcc-----eEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc
Q 017601 166 VARSFSKSIDVYDQDIH-----LRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS 239 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~ 239 (369)
.+ +.|+...||++... ++.-+.+. |..-+..+.+ .+++.|++++.|.++.+||+.++ +.+..|.+|
T Consensus 114 cG-GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f----~dD~~ilT~SGD~TCalWDie~g---~~~~~f~GH 185 (343)
T KOG0286|consen 114 CG-GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRF----LDDNHILTGSGDMTCALWDIETG---QQTQVFHGH 185 (343)
T ss_pred ec-CcCceeEEEecccccccccceeeeeecCccceeEEEEE----cCCCceEecCCCceEEEEEcccc---eEEEEecCC
Confidence 77 99999999987521 12222222 3333333332 23679999999999999999999 888999988
Q ss_pred CCCcEEEEEECC-CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 240 VGDILYAVCSSS-TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 240 ~~~~v~~v~~sp-~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
.+.|.+++++| ++ .+++|+.|++.+|||+|.+.+.++|.+| +..|++|.|.| +|.-+++||.|+++|+||++..+
T Consensus 186 -~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-esDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 186 -TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-ESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred -cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc-ccccceEEEcc-CCCeeeecCCCceeEEEeecCCc
Confidence 89999999999 77 9999999999999999999999999999 99999999999 99999999999999999999999
Q ss_pred eeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCCC
Q 017601 318 KVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKENEISALKGLVN 369 (369)
Q Consensus 318 ~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~~ 369 (369)
.+..|.......++.. +..|++|++|..|.++.+||.-.++ .+..|.||-|
T Consensus 263 ~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e-~vg~L~GHeN 316 (343)
T KOG0286|consen 263 ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE-RVGVLAGHEN 316 (343)
T ss_pred EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc-eEEEeeccCC
Confidence 9888876543233333 4589999999999999999987665 4566777754
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=259.43 Aligned_cols=254 Identities=16% Similarity=0.111 Sum_probs=199.3
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC-CCCccccccccC--------------CCC------CCCC
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG-KDVDRLTYSVLP--------------QDC------GVGE 148 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~-~~~~~~~~~~~~--------------~~~------~~~~ 148 (369)
.-...++|..|++|+ .++|.+-.+-.|++|.++... ..+.......++ ... --++
T Consensus 376 nt~~~v~ca~fSdds----smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDS----SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EcCCcceeEeecCCc----chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 334668899999984 588888888899999998421 000000000000 000 0113
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
+.+.++.|+| +..++++| |.|++||||..........-..|...+-.+++ +|-|-+|+++|.|++.++|.....
T Consensus 452 GPVyg~sFsP-d~rfLlSc-SED~svRLWsl~t~s~~V~y~GH~~PVwdV~F---~P~GyYFatas~D~tArLWs~d~~- 525 (707)
T KOG0263|consen 452 GPVYGCSFSP-DRRFLLSC-SEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQF---APRGYYFATASHDQTARLWSTDHN- 525 (707)
T ss_pred Cceeeeeecc-cccceeec-cCCcceeeeecccceeEEEecCCCcceeeEEe---cCCceEEEecCCCceeeeeecccC-
Confidence 4577999999 45677887 99999999998754443333334444555553 345679999999999999998876
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
++++.+.+| ...|.|+.|+|+. ++|+||.|++|++||+.+|..++.|.|| +++|++|+||| +|++|+||+.|+.
T Consensus 526 --~PlRifagh-lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~Sp-~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 526 --KPLRIFAGH-LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFSP-CGRYLASGDEDGL 600 (707)
T ss_pred --Cchhhhccc-ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEcC-CCceEeecccCCc
Confidence 888888888 7899999999999 9999999999999999999999999999 99999999999 9999999999999
Q ss_pred EEEEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 308 VFCGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|++||+.+++.+..+.+|..- .++..+.||..||+|+.|++|++||+....
T Consensus 601 I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 601 IKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 999999999999999999732 234446799999999999999999987643
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-30 Score=219.92 Aligned_cols=288 Identities=15% Similarity=0.110 Sum_probs=217.4
Q ss_pred EEEeCCeEEEEEEeCCchh-hhcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEE
Q 017601 46 YIASGCHLYKLQVMMDDWF-VSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSK 124 (369)
Q Consensus 46 ~~as~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~ 124 (369)
+-.-..+||.++...+... ++...++.++.++.-+.+ +.....--...|-..+|+|. +..+|++.-+-.+-||+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn-K~haipl~s~WVMtCA~sPS----g~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN-KVHAIPLPSSWVMTCAYSPS----GNFVACGGLDNKCSIYP 125 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc-ceeEEecCceeEEEEEECCC----CCeEEecCcCceeEEEe
Confidence 3344567788888887554 466667766655543221 11111123578999999997 47999998888899999
Q ss_pred ecCCCCC-CccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCC
Q 017601 125 LDTSGKD-VDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSP 203 (369)
Q Consensus 125 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~ 203 (369)
+.....+ ...-+..+..|. +-.+++.|-+ +..|+++ |.|.+..+||+++..+......|...+..+...|-
T Consensus 126 ls~~d~~g~~~v~r~l~gHt-----gylScC~f~d--D~~ilT~-SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHT-----GYLSCCRFLD--DNHILTG-SGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS 197 (343)
T ss_pred cccccccccceeeeeecCcc-----ceeEEEEEcC--CCceEec-CCCceEEEEEcccceEEEEecCCcccEEEEecCCC
Confidence 8854221 111122233332 2234667766 4567777 89999999999866555444455556655554332
Q ss_pred CCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc-
Q 017601 204 VNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC- 281 (369)
Q Consensus 204 ~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h- 281 (369)
+++.|++++-|++.+|||+|.+ .++++|.+| ...|++|+|.|+| -+++|++|+++++||+|..+.+..+...
T Consensus 198 --~~ntFvSg~cD~~aklWD~R~~---~c~qtF~gh-esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~ 271 (343)
T KOG0286|consen 198 --DGNTFVSGGCDKSAKLWDVRSG---QCVQTFEGH-ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS 271 (343)
T ss_pred --CCCeEEecccccceeeeeccCc---ceeEeeccc-ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence 5789999999999999999999 999999988 8999999999999 9999999999999999998888777632
Q ss_pred ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCee-eeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 282 SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 282 ~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
...+|++++||. .|++|.+|..|.++.+||.-.++.+-.+.||.+-. ++..++||..+++||.|.+++||.
T Consensus 272 ~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 IICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 135799999999 99999999999999999999999999999998443 333477999999999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.5e-30 Score=217.03 Aligned_cols=243 Identities=16% Similarity=0.131 Sum_probs=187.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|...|+.++.++|+ ....+++.++.+++||+.++.. ...+-+|.. .+.+++|+| +...++++
T Consensus 59 ~~GHsH~v~dv~~s~dg----~~alS~swD~~lrlWDl~~g~~-----t~~f~GH~~-----dVlsva~s~-dn~qivSG 123 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDG----NFALSASWDGTLRLWDLATGES-----TRRFVGHTK-----DVLSVAFST-DNRQIVSG 123 (315)
T ss_pred eeccceEecceEEccCC----ceEEeccccceEEEEEecCCcE-----EEEEEecCC-----ceEEEEecC-CCceeecC
Confidence 56899999999999984 6777888999999999997621 222333332 256899999 45677877
Q ss_pred ecccceEEEEeC-CcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 168 RSFSKSIDVYDQ-DIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 168 ~s~d~~i~lwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
|.|++|++|++ +.+..++....+..-+..+.++|.. +...+++++.|++|++||+++. +..+.+.+| .+.++.
T Consensus 124 -SrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~-~~p~Ivs~s~DktvKvWnl~~~---~l~~~~~gh-~~~v~t 197 (315)
T KOG0279|consen 124 -SRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE-SNPIIVSASWDKTVKVWNLRNC---QLRTTFIGH-SGYVNT 197 (315)
T ss_pred -CCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC-CCcEEEEccCCceEEEEccCCc---chhhccccc-cccEEE
Confidence 99999999996 3454444333223344444444432 2568999999999999999987 666777777 789999
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD 325 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~ 325 (369)
+++|||| +.++|+.||.+.+||++.++.+.++. | ...|.+++|+| + ++.+....+..|+|||+.++.++..++-.
T Consensus 198 ~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a-~~~v~sl~fsp-n-rywL~~at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 198 VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-A-FDIVNSLCFSP-N-RYWLCAATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred EEECCCCCEEecCCCCceEEEEEccCCceeEecc-C-CCeEeeEEecC-C-ceeEeeccCCceEEEeccchhhhhhcccc
Confidence 9999999 99999999999999999999988876 4 68999999999 5 45556667888999999998877777432
Q ss_pred C----------CeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 326 S----------NWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 326 ~----------~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
. .......++||..|++|-.|+.|++|.+.
T Consensus 274 ~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 274 GIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1 11222235599999999999999999875
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-32 Score=239.41 Aligned_cols=239 Identities=16% Similarity=0.206 Sum_probs=194.6
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.-+..|+.|.|.|++ .+|.+++..|.+-+|+...-. -...++.|+..+ .++.|++ ++..++++ .
T Consensus 94 Kvkc~V~~v~WtPeG----RRLltgs~SGEFtLWNg~~fn-----FEtilQaHDs~V-----r~m~ws~-~g~wmiSg-D 157 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEG----RRLLTGSQSGEFTLWNGTSFN-----FETILQAHDSPV-----RTMKWSH-NGTWMISG-D 157 (464)
T ss_pred ccccceeeEEEcCCC----ceeEeecccccEEEecCceee-----HHHHhhhhcccc-----eeEEEcc-CCCEEEEc-C
Confidence 345689999999984 799999999999999975331 123346676654 4899999 45566776 8
Q ss_pred ccceEEEEeCCcc-eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 170 FSKSIDVYDQDIH-LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 170 ~d~~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
.++.|++|+.... ++.+.. .+...+..+. |+|.+..|+++++||+|+|||.+.. +....+.+| +-.|.|++
T Consensus 158 ~gG~iKyWqpnmnnVk~~~a-hh~eaIRdla---fSpnDskF~t~SdDg~ikiWdf~~~---kee~vL~GH-gwdVksvd 229 (464)
T KOG0284|consen 158 KGGMIKYWQPNMNNVKIIQA-HHAEAIRDLA---FSPNDSKFLTCSDDGTIKIWDFRMP---KEERVLRGH-GWDVKSVD 229 (464)
T ss_pred CCceEEecccchhhhHHhhH-hhhhhhheec---cCCCCceeEEecCCCeEEEEeccCC---chhheeccC-CCCcceec
Confidence 9999999987632 222211 1223444444 4456789999999999999999988 666667877 78999999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCC
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSN 327 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~ 327 (369)
|+|.. +||+||.|..|++||.|+++++.++.+| +..|+.+.|+| ++++|+++|.|..++++|+++-+.++.+++|.
T Consensus 230 WHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H-KntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk- 306 (464)
T KOG0284|consen 230 WHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH-KNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK- 306 (464)
T ss_pred cCCccceeEEccCCceeEeecCCCcchhhhhhhc-cceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcch-
Confidence 99998 9999999999999999999999999999 99999999999 99999999999999999999888999999998
Q ss_pred eeeeeE---cC-CCCEEEEEeCCCcEEEEECCC
Q 017601 328 WLGFSK---CS-NRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 328 ~~~~~~---~~-d~~~l~sgs~dg~I~iWd~~~ 356 (369)
..+.. .| ...+|.+|+.||.|..|.+..
T Consensus 307 -kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 307 -KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL 338 (464)
T ss_pred -hhheeeccccccccceeeccCCCceEEEeccc
Confidence 43333 33 778999999999999999873
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-31 Score=232.69 Aligned_cols=242 Identities=16% Similarity=0.145 Sum_probs=197.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
++.|...|.++.|++++ ..+.|+|.+|.|..|+.....- ..++.|. .+.+.+++|+| ++..|++|
T Consensus 134 lQaHDs~Vr~m~ws~~g----~wmiSgD~gG~iKyWqpnmnnV------k~~~ahh----~eaIRdlafSp-nDskF~t~ 198 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNG----TWMISGDKGGMIKYWQPNMNNV------KIIQAHH----AEAIRDLAFSP-NDSKFLTC 198 (464)
T ss_pred hhhhcccceeEEEccCC----CEEEEcCCCceEEecccchhhh------HHhhHhh----hhhhheeccCC-CCceeEEe
Confidence 67999999999999984 7999999999999999875421 1111111 12356899999 66789999
Q ss_pred ecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
|.|++|+|||... ..+.+ ..|...+..++|+|. .+.++++|.|+.|++||.|++ .|+.++.+| ...|.
T Consensus 199 -SdDg~ikiWdf~~~kee~vL--~GHgwdVksvdWHP~---kgLiasgskDnlVKlWDprSg---~cl~tlh~H-KntVl 268 (464)
T KOG0284|consen 199 -SDDGTIKIWDFRMPKEERVL--RGHGWDVKSVDWHPT---KGLIASGSKDNLVKLWDPRSG---SCLATLHGH-KNTVL 268 (464)
T ss_pred -cCCCeEEEEeccCCchhhee--ccCCCCcceeccCCc---cceeEEccCCceeEeecCCCc---chhhhhhhc-cceEE
Confidence 9999999999753 33333 335556667777663 458888999999999999999 899998877 78999
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE-E
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF-R 323 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~-~ 323 (369)
++.|+|++ +|+++|.|.+++|+|+|+.+.+.++++| +..|+++.|+|....+|.+|+.|+.|..|.+...+.+..+ .
T Consensus 269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H-kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~ 347 (464)
T KOG0284|consen 269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH-KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP 347 (464)
T ss_pred EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc-hhhheeeccccccccceeeccCCCceEEEeccccccccCCCc
Confidence 99999999 9999999999999999999999999999 9999999999999999999999999999999854444444 3
Q ss_pred cCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCC
Q 017601 324 GDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 324 g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+|. ..+.. -|-|.+|++|+.|.++++|.-...
T Consensus 348 AHd--~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 348 AHD--GEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred ccc--cceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 555 33333 457999999999999999976543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=242.45 Aligned_cols=255 Identities=21% Similarity=0.282 Sum_probs=202.8
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.|...|.++.|++++ ..+++++.++.+++|+...... .....+..|. .++.+++|+|+ +.+++++ +
T Consensus 157 ~~~~sv~~~~fs~~g----~~l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~-----~~v~~~~fs~d-~~~l~s~-s 222 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDG----RALAAASSDGLIRIWKLEGIKS---NLLRELSGHT-----RGVSDVAFSPD-GSYLLSG-S 222 (456)
T ss_pred cccCceEEEEEcCCC----CeEEEccCCCcEEEeecccccc---hhhccccccc-----cceeeeEECCC-CcEEEEe-c
Confidence 347899999999985 5799999999999999954321 0111122222 24668999995 4577777 9
Q ss_pred ccceEEEEeCCcceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 170 FSKSIDVYDQDIHLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
.|++|+|||.....+.++++ .|...+..+. |+++++.+++++.|++|+|||++++ +++..+..| .+.|++++
T Consensus 223 ~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~---f~p~g~~i~Sgs~D~tvriWd~~~~---~~~~~l~~h-s~~is~~~ 295 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVA---FSPDGNLLVSGSDDGTVRIWDVRTG---ECVRKLKGH-SDGISGLA 295 (456)
T ss_pred CCceEEEeeccCCCeEEEEecCCCCceEEEE---ecCCCCEEEEecCCCcEEEEeccCC---eEEEeeecc-CCceEEEE
Confidence 99999999995443444444 3555555554 4456778889999999999999998 899999987 78999999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCce--eeeeccccccC-ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWS--ALSRWVHCSKY-EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~--~~~~~~~h~~~-~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
|++++ .|++++.|+.|+|||+.++. ++..+.++... .++++.|+| ++.++++++.|+.+++||++.+.+...+.+
T Consensus 296 f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 296 FSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred ECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 99999 99999999999999999998 67888877333 599999999 999999999999999999999999999999
Q ss_pred CCCe-eeeeE---cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 325 DSNW-LGFSK---CSNRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 325 ~~~~-~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
|..- ..+.. .+.+.++++|++|+.|++||..++. .+..+.||
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~-~~~~l~~h 420 (456)
T KOG0266|consen 375 HSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG-ILQRLEGH 420 (456)
T ss_pred cCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc-hhhhhcCC
Confidence 9842 12211 3389999999999999999999854 56777777
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=223.21 Aligned_cols=245 Identities=16% Similarity=0.194 Sum_probs=204.1
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|+..|..+-|.|+. .++++++.+++|++||+.++.- ...+++|..+ +..++|+.. +..+|+|
T Consensus 104 l~g~r~~vt~v~~hp~~----~~v~~as~d~tikv~D~~tg~~-----e~~LrGHt~s-----v~di~~~a~-Gk~l~tc 168 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSE----ALVVSASEDATIKVFDTETGEL-----ERSLRGHTDS-----VFDISFDAS-GKYLATC 168 (406)
T ss_pred hhccccceeeeeeccCc----eEEEEecCCceEEEEEccchhh-----hhhhhccccc-----eeEEEEecC-ccEEEec
Confidence 56899999999999984 6888888999999999987621 2334444433 457999984 4677888
Q ss_pred ecccceEEEEeCCcce---EEEEeeeC-CcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 168 RSFSKSIDVYDQDIHL---RTLRTLWY-PSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~---~~~~~~~~-~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
|.|-++++||.++.. +.+....+ ..++.|.+ -+..+++++.|.+|+.||+.++ -+++++.++ ...
T Consensus 169 -SsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P------~gd~ilS~srD~tik~We~~tg---~cv~t~~~h-~ew 237 (406)
T KOG0295|consen 169 -SSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP------LGDHILSCSRDNTIKAWECDTG---YCVKTFPGH-SEW 237 (406)
T ss_pred -CCccchhheeHHHHHHHHHHhcCcccceeeEEEEe------cCCeeeecccccceeEEecccc---eeEEeccCc-hHh
Confidence 889899999987543 33332222 23455554 3579999999999999999999 899999987 679
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC---------CC-----CEEEEEECCCeE
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI---------DS-----NYIYVQGVDYEV 308 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~---------d~-----~~l~s~s~D~~i 308 (369)
|..+..+.|| ++|+++.|.+|++|=+.++++...+..| +.+|-+++|-|. .+ .++.++|.|++|
T Consensus 238 vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 238 VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 9999999999 9999999999999999999999999999 999999999773 12 589999999999
Q ss_pred EEEECcCCceeEEEEcCCCee-eeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 309 FCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 309 ~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
++||+.++.|++++.||.+|. ++...|.|++|+|+.+|+++++||+++++.
T Consensus 317 k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 317 KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred EEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee
Confidence 999999999999999999886 455577999999999999999999999875
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=208.76 Aligned_cols=252 Identities=13% Similarity=0.179 Sum_probs=192.9
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
..+.|+.|.+.||. ..||++. .-+|++||+...... +..+| ..|. ..++.+.|.- ++..++++ |+
T Consensus 39 ~dsqVNrLeiTpdk----~~LAaa~-~qhvRlyD~~S~np~-Pv~t~--e~h~-----kNVtaVgF~~-dgrWMyTg-se 103 (311)
T KOG0315|consen 39 PDSQVNRLEITPDK----KDLAAAG-NQHVRLYDLNSNNPN-PVATF--EGHT-----KNVTAVGFQC-DGRWMYTG-SE 103 (311)
T ss_pred CccceeeEEEcCCc----chhhhcc-CCeeEEEEccCCCCC-ceeEE--eccC-----CceEEEEEee-cCeEEEec-CC
Confidence 35889999999984 4565544 468999999876431 22223 2232 2366899988 55677877 99
Q ss_pred cceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEEC
Q 017601 171 SKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSS 250 (369)
Q Consensus 171 d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~s 250 (369)
|++++|||+.... .-+.++++..++.+-.+ |.-..|+++..+|.|++||++.. .+-..+......+|.++...
T Consensus 104 Dgt~kIWdlR~~~-~qR~~~~~spVn~vvlh---pnQteLis~dqsg~irvWDl~~~---~c~~~liPe~~~~i~sl~v~ 176 (311)
T KOG0315|consen 104 DGTVKIWDLRSLS-CQRNYQHNSPVNTVVLH---PNQTELISGDQSGNIRVWDLGEN---SCTHELIPEDDTSIQSLTVM 176 (311)
T ss_pred CceEEEEeccCcc-cchhccCCCCcceEEec---CCcceEEeecCCCcEEEEEccCC---ccccccCCCCCcceeeEEEc
Confidence 9999999986421 12334455555554433 33568999999999999999977 55555443335789999999
Q ss_pred CCC-cEEEEeCCCcEEEEeCCC------ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC-ceeEEE
Q 017601 251 STG-NIAVAGADRTVTIYDPRR------WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES-SKVFAF 322 (369)
Q Consensus 251 p~g-~lasgs~D~~v~vwD~~~------~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~-~~~~~~ 322 (369)
||| .++.+...|...+|++-+ -+++.+++.| ..-++.+.+|| |+++||++|.|.+++||+...- +....+
T Consensus 177 ~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah-~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l 254 (311)
T KOG0315|consen 177 PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH-NGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVL 254 (311)
T ss_pred CCCcEEEEecCCccEEEEEccCCCccccceEhhheecc-cceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEe
Confidence 999 999999999999999865 3567788899 99999999999 9999999999999999999886 667778
Q ss_pred EcCCCee-eeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 323 RGDSNWL-GFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 323 ~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
.||.+|. ....+.|+++|++|+.|+.+++|+++.++. +....||
T Consensus 255 ~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~-v~qy~gh 299 (311)
T KOG0315|consen 255 TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE-VRQYQGH 299 (311)
T ss_pred ecCCceEEeeeeccCccEEEecCCCCceeecccccCce-eeecCCc
Confidence 8999885 333466999999999999999999999874 3445554
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=219.87 Aligned_cols=254 Identities=15% Similarity=0.135 Sum_probs=197.9
Q ss_pred cccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeE
Q 017601 74 IPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSG 153 (369)
Q Consensus 74 ~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (369)
..++...+.. .-.+.+|++.|++|+|+.. ++.+++++.+-.+.+||.++..+ .......| +.++.+
T Consensus 133 kv~D~~tg~~-e~~LrGHt~sv~di~~~a~----Gk~l~tcSsDl~~~LWd~~~~~~----c~ks~~gh-----~h~vS~ 198 (406)
T KOG0295|consen 133 KVFDTETGEL-ERSLRGHTDSVFDISFDAS----GKYLATCSSDLSAKLWDFDTFFR----CIKSLIGH-----EHGVSS 198 (406)
T ss_pred EEEEccchhh-hhhhhccccceeEEEEecC----ccEEEecCCccchhheeHHHHHH----HHHHhcCc-----ccceee
Confidence 3334444432 2336799999999999875 48999999988899999875311 11112222 234678
Q ss_pred EEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc
Q 017601 154 LCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG 231 (369)
Q Consensus 154 l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~ 231 (369)
++|-|.+ ..++++ +.|.+|+.||.+. ++.++. .++.-+..+. ...||..+++++.|.+|++|-+.++ +
T Consensus 199 V~f~P~g-d~ilS~-srD~tik~We~~tg~cv~t~~--~h~ewvr~v~---v~~DGti~As~s~dqtl~vW~~~t~---~ 268 (406)
T KOG0295|consen 199 VFFLPLG-DHILSC-SRDNTIKAWECDTGYCVKTFP--GHSEWVRMVR---VNQDGTIIASCSNDQTLRVWVVATK---Q 268 (406)
T ss_pred EEEEecC-Ceeeec-ccccceeEEecccceeEEecc--CchHhEEEEE---ecCCeeEEEecCCCceEEEEEeccc---h
Confidence 9999965 678888 9999999999864 444433 2333333333 3346666777889999999999988 7
Q ss_pred eeeeeeccCCCcEEEEEECCC--------------C--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCC
Q 017601 232 CLHRICGSVGDILYAVCSSST--------------G--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSID 295 (369)
Q Consensus 232 ~~~~~~~~~~~~v~~v~~sp~--------------g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d 295 (369)
|...+..| ..+|-|++|-|. + .+++++.|++||+||+.++.++.++.+| ...|.+++|+| .
T Consensus 269 ~k~~lR~h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh-dnwVr~~af~p-~ 345 (406)
T KOG0295|consen 269 CKAELREH-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH-DNWVRGVAFSP-G 345 (406)
T ss_pred hhhhhhcc-ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc-cceeeeeEEcC-C
Confidence 77777766 688999998763 2 7889999999999999999999999999 99999999999 9
Q ss_pred CCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcC-CCCEEEEEeCCCcEEEEEC
Q 017601 296 SNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCS-NRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~-d~~~l~sgs~dg~I~iWd~ 354 (369)
|+||+|+..|+++++||+++.+|+..+..|..+......+ +..++++|+-|.++++|..
T Consensus 346 Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 346 GKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999998444444433 6779999999999999974
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=235.58 Aligned_cols=250 Identities=15% Similarity=0.111 Sum_probs=200.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..+|+..|.+++...+ +.+++++++|..+++|.++...... .......+|... +.+++++..+...|+++
T Consensus 361 i~GH~e~vlSL~~~~~----g~llat~sKD~svilWr~~~~~~~~-~~~a~~~gH~~s-----vgava~~~~~asffvsv 430 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWSS----GDLLATGSKDKSVILWRLNNNCSKS-LCVAQANGHTNS-----VGAVAGSKLGASFFVSV 430 (775)
T ss_pred EeCchhheeeeeeccc----CcEEEEecCCceEEEEEecCCcchh-hhhhhhcccccc-----cceeeecccCccEEEEe
Confidence 4599999999994444 3799999999999999995432111 111223344433 34788888788888888
Q ss_pred ecccceEEEEeCCc-------ceEEEE--eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 168 RSFSKSIDVYDQDI-------HLRTLR--TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 168 ~s~d~~i~lwd~~~-------~~~~~~--~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
|.|.++++|++++ .+...+ ...|...++.+.. +|++..++++|.|.+.+||++... ..+.++.+
T Consensus 431 -S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai---a~ndkLiAT~SqDktaKiW~le~~---~l~~vLsG 503 (775)
T KOG0319|consen 431 -SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI---APNDKLIATGSQDKTAKIWDLEQL---RLLGVLSG 503 (775)
T ss_pred -cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe---cCCCceEEecccccceeeecccCc---eEEEEeeC
Confidence 9999999999865 111111 1125556666663 345667888999999999999966 78899998
Q ss_pred cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 239 SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
| ...|+|+.|+|.. .+||+|.|+|||||.+.+..++.+|.|| ...|..+.|-. ++..|+|++.||.+++|++++++
T Consensus 504 H-~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH-~~aVlra~F~~-~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 504 H-TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH-TSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred C-ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc-cceeEeeeeee-CCcEEEeccCCCcEEEEeccchh
Confidence 8 8899999999999 9999999999999999999999999999 99999999999 99999999999999999999999
Q ss_pred eeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 318 KVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 318 ~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
|..++.+|.. ...+...+...++++|+.||.|.+|.-.|.
T Consensus 581 C~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 581 CEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999982 223444567789999999999999965443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-29 Score=234.38 Aligned_cols=275 Identities=16% Similarity=0.202 Sum_probs=201.7
Q ss_pred EeCCchhhhcC--CCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc
Q 017601 58 VMMDDWFVSEG--KDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL 135 (369)
Q Consensus 58 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~ 135 (369)
+...+.+++-| +-+.+..+++|.. .-++..++|-..|++++++||+ .++|++..||+|++||...+ .+
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQQgH~~~i~~l~YSpDg----q~iaTG~eDgKVKvWn~~Sg-----fC 384 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQQGHSDRITSLAYSPDG----QLIATGAEDGKVKVWNTQSG-----FC 384 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeecc-ceeeeccccccceeeEEECCCC----cEEEeccCCCcEEEEeccCc-----eE
Confidence 33335555333 2233333444433 2456678999999999999994 89999999999999999865 22
Q ss_pred cccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc
Q 017601 136 TYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE 215 (369)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~ 215 (369)
...+..|.. +++++.|+.. +..+.++ |.||+|+.||... -+.++++..|..+.|.. ...+|.|..+.+++.
T Consensus 385 ~vTFteHts-----~Vt~v~f~~~-g~~llss-SLDGtVRAwDlkR-YrNfRTft~P~p~Qfsc-vavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 385 FVTFTEHTS-----GVTAVQFTAR-GNVLLSS-SLDGTVRAWDLKR-YRNFRTFTSPEPIQFSC-VAVDPSGELVCAGAQ 455 (893)
T ss_pred EEEeccCCC-----ceEEEEEEec-CCEEEEe-ecCCeEEeeeecc-cceeeeecCCCceeeeE-EEEcCCCCEEEeecc
Confidence 233333433 4679999984 4456666 8999999999853 34556666665554433 223454556666666
Q ss_pred CC-eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc-eeeeeccccccCceEEEEEc
Q 017601 216 GC-QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW-SALSRWVHCSKYEITGLSFS 292 (369)
Q Consensus 216 d~-~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~-~~~~~~~~h~~~~v~~l~~s 292 (369)
|. .|.+|++++| +.+-.+.+| .++|.+++|+|++ .||+||+|+||++||+-.. ..+.++. + ...++.++|+
T Consensus 456 d~F~IfvWS~qTG---qllDiLsGH-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i-~sdvl~vsfr 529 (893)
T KOG0291|consen 456 DSFEIFVWSVQTG---QLLDILSGH-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-I-RSDVLAVSFR 529 (893)
T ss_pred ceEEEEEEEeecC---eeeehhcCC-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-e-ccceeEEEEc
Confidence 64 6999999999 888889988 8999999999999 9999999999999998653 3444544 3 5789999999
Q ss_pred CCCCCEEEEEECCCeEEEEECcCCceeEEEEcC---------------------CCeeeeeEcCCCCEEEEEeCCCcEEE
Q 017601 293 SIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD---------------------SNWLGFSKCSNRDVLGGWSDSGSIFV 351 (369)
Q Consensus 293 p~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~---------------------~~~~~~~~~~d~~~l~sgs~dg~I~i 351 (369)
| ||+.|+++..||.|.+||.+.+..+..+.|- ..+..+..++||..|++|++.+.|.+
T Consensus 530 P-dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCi 608 (893)
T KOG0291|consen 530 P-DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICI 608 (893)
T ss_pred C-CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEE
Confidence 9 9999999999999999999875444333221 11122333569999999999999999
Q ss_pred EECCCCc
Q 017601 352 ADVVAKE 358 (369)
Q Consensus 352 Wd~~~~~ 358 (369)
|++.++-
T Consensus 609 Y~v~~~v 615 (893)
T KOG0291|consen 609 YDVPEGV 615 (893)
T ss_pred EECchhh
Confidence 9998764
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=220.17 Aligned_cols=244 Identities=17% Similarity=0.184 Sum_probs=199.2
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..+|-+.|.|+++.|. ...+++++.|+++.|||+.++ ..+..+.+|... +.++++|+..+ ++.++
T Consensus 147 i~gHlgWVr~vavdP~----n~wf~tgs~DrtikIwDlatg-----~LkltltGhi~~-----vr~vavS~rHp-YlFs~ 211 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPG----NEWFATGSADRTIKIWDLATG-----QLKLTLTGHIET-----VRGVAVSKRHP-YLFSA 211 (460)
T ss_pred hhhccceEEEEeeCCC----ceeEEecCCCceeEEEEcccC-----eEEEeecchhhe-----eeeeeecccCc-eEEEe
Confidence 5699999999999996 379999999999999999976 223344444332 44899999665 55566
Q ss_pred ecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|+.|+-||+. +.++.++ .|-..+-.+..+| -...|++++.|.++++||+|+. ..+..+.+| ..+|.
T Consensus 212 -gedk~VKCwDLe~nkvIR~Yh--GHlS~V~~L~lhP---Tldvl~t~grDst~RvWDiRtr---~~V~~l~GH-~~~V~ 281 (460)
T KOG0285|consen 212 -GEDKQVKCWDLEYNKVIRHYH--GHLSGVYCLDLHP---TLDVLVTGGRDSTIRVWDIRTR---ASVHVLSGH-TNPVA 281 (460)
T ss_pred -cCCCeeEEEechhhhhHHHhc--cccceeEEEeccc---cceeEEecCCcceEEEeeeccc---ceEEEecCC-CCcce
Confidence 799999999986 3344332 2344454554433 2458999999999999999999 889999988 89999
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
++.+.|.. .+++||.|++|++||++.++...++..| +..|.+++.+| ....+||+|.|. |+.|++..++.+..+.|
T Consensus 282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h-kksvral~lhP-~e~~fASas~dn-ik~w~~p~g~f~~nlsg 358 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH-KKSVRALCLHP-KENLFASASPDN-IKQWKLPEGEFLQNLSG 358 (460)
T ss_pred eEEeecCCCceEEecCCceEEEeeeccCceeEeeecc-cceeeEEecCC-chhhhhccCCcc-ceeccCCccchhhcccc
Confidence 99999988 9999999999999999999999999999 99999999999 889999998874 89999999999999999
Q ss_pred CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 325 DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 325 ~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
|..........+..++++|++.|.+.+||.++|-+
T Consensus 359 h~~iintl~~nsD~v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 359 HNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred ccceeeeeeeccCceEEEcCCceEEEEEecCcCcc
Confidence 98332222233667999999999999999998854
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=209.98 Aligned_cols=242 Identities=13% Similarity=0.130 Sum_probs=184.2
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
-.+.+..++|++.. -..++++..+|.+++||+.....++. ..+.|... +.++.|++.....++++ |+
T Consensus 59 ~~D~LfdV~Wse~~---e~~~~~a~GDGSLrl~d~~~~s~Pi~----~~kEH~~E-----V~Svdwn~~~r~~~lts-SW 125 (311)
T KOG0277|consen 59 TEDGLFDVAWSENH---ENQVIAASGDGSLRLFDLTMPSKPIH----KFKEHKRE-----VYSVDWNTVRRRIFLTS-SW 125 (311)
T ss_pred cccceeEeeecCCC---cceEEEEecCceEEEeccCCCCcchh----HHHhhhhh-----eEEeccccccceeEEee-cc
Confidence 35788999999864 35777788899999999775533222 22333322 45899999888888888 99
Q ss_pred cceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 171 SKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 171 d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
|++|+|||.... ++++. .+...+-...++|.. .+.++++|.|++++|||+|... +.+. +..| ...|.|+.
T Consensus 126 D~TiKLW~~~r~~Sv~Tf~--gh~~~Iy~a~~sp~~--~nlfas~Sgd~~l~lwdvr~~g--k~~~-i~ah-~~Eil~cd 197 (311)
T KOG0277|consen 126 DGTIKLWDPNRPNSVQTFN--GHNSCIYQAAFSPHI--PNLFASASGDGTLRLWDVRSPG--KFMS-IEAH-NSEILCCD 197 (311)
T ss_pred CCceEeecCCCCcceEeec--CCccEEEEEecCCCC--CCeEEEccCCceEEEEEecCCC--ceeE-EEec-cceeEeec
Confidence 999999997643 33332 244444444544433 3688889999999999999762 4444 5555 47999999
Q ss_pred ECCCC--cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEc
Q 017601 249 SSSTG--NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRG 324 (369)
Q Consensus 249 ~sp~g--~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g 324 (369)
|+.-. .|+||+.|+.|+.||+|+ ..++..+.+| ...|..|.|||+....|+|+|.|-++||||... ..++.++.-
T Consensus 198 w~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~ 276 (311)
T KOG0277|consen 198 WSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH 276 (311)
T ss_pred ccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc
Confidence 99877 899999999999999999 6788999999 999999999998889999999999999999985 345555555
Q ss_pred CCCee-eeeEcC-CCCEEEEEeCCCcEEEEEC
Q 017601 325 DSNWL-GFSKCS-NRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 325 ~~~~~-~~~~~~-d~~~l~sgs~dg~I~iWd~ 354 (369)
|+.+. ++..+. ++.++|+.+.|+.++||+.
T Consensus 277 HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 277 HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEeccccccccCceeeecccccceeeecc
Confidence 66221 111122 7889999999999999984
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=243.66 Aligned_cols=204 Identities=19% Similarity=0.152 Sum_probs=169.6
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+++|.+.|...+|+|+ ...|.+++.|+.+++|.+.+... .-...+|..+ +..+.|+| .+.+||
T Consensus 445 ~~L~GH~GPVyg~sFsPd----~rfLlScSED~svRLWsl~t~s~-----~V~y~GH~~P-----VwdV~F~P-~GyYFa 509 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPD----RRFLLSCSEDSSVRLWSLDTWSC-----LVIYKGHLAP-----VWDVQFAP-RGYYFA 509 (707)
T ss_pred EEeecCCCceeeeeeccc----ccceeeccCCcceeeeeccccee-----EEEecCCCcc-----eeeEEecC-CceEEE
Confidence 347899999999999998 47999999999999999986521 1112233322 33799999 678999
Q ss_pred EEecccceEEEEeCCcceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
++ |.|++-++|..+. ..+++.+. |-..+.++.++ |+..+++++|.|.+||+||+.++ ..++.|.+| .++|
T Consensus 510 ta-s~D~tArLWs~d~-~~PlRifaghlsDV~cv~FH---PNs~Y~aTGSsD~tVRlWDv~~G---~~VRiF~GH-~~~V 580 (707)
T KOG0263|consen 510 TA-SHDQTARLWSTDH-NKPLRIFAGHLSDVDCVSFH---PNSNYVATGSSDRTVRLWDVSTG---NSVRIFTGH-KGPV 580 (707)
T ss_pred ec-CCCceeeeeeccc-CCchhhhcccccccceEEEC---CcccccccCCCCceEEEEEcCCC---cEEEEecCC-CCce
Confidence 99 9999999998753 22233222 33344444433 34668999999999999999999 889999988 8999
Q ss_pred EEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 245 YAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 245 ~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
.+++|||+| +||+|+.|+.|++||+.+++++.++.+| ++.|.++.||. ||..||++|.|++|++||+..
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSR-DGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEec-CCCEEEecCCCCeEEEEEchh
Confidence 999999999 9999999999999999999999999999 99999999999 999999999999999999976
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=208.92 Aligned_cols=253 Identities=16% Similarity=0.189 Sum_probs=194.3
Q ss_pred eEEEEeecCCCCceEEEEE-----ecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 96 QSIALAETDSSGYMVLGSV-----DSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~-----d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
+++.|||=. +++..+|++ -..|++++.+++....-.....|.. +.+..+++|++..+..++++ +.
T Consensus 12 ysvqfSPf~-~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~--------~D~LfdV~Wse~~e~~~~~a-~G 81 (311)
T KOG0277|consen 12 YSVQFSPFV-ENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDT--------EDGLFDVAWSENHENQVIAA-SG 81 (311)
T ss_pred ceeEecccc-cchhheeehhhcccccCceEEEEecCCCCCeEEEEeeec--------ccceeEeeecCCCcceEEEE-ec
Confidence 577888842 234555554 3467888888863211111112221 22355899999888888888 89
Q ss_pred cceEEEEeCCcceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 171 SKSIDVYDQDIHLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 171 d~~i~lwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
||+++|||......+++..+ |...+-.+.+.+. ....+++.|.|++|+|||...+ +.+.++.++ ...|+...|
T Consensus 82 DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~--~r~~~ltsSWD~TiKLW~~~r~---~Sv~Tf~gh-~~~Iy~a~~ 155 (311)
T KOG0277|consen 82 DGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV--RRRIFLTSSWDGTIKLWDPNRP---NSVQTFNGH-NSCIYQAAF 155 (311)
T ss_pred CceEEEeccCCCCcchhHHHhhhhheEEeccccc--cceeEEeeccCCceEeecCCCC---cceEeecCC-ccEEEEEec
Confidence 99999999876666665544 4455555555432 3457888899999999999877 889999988 889999999
Q ss_pred CCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCC
Q 017601 250 SSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDS 326 (369)
Q Consensus 250 sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~ 326 (369)
+|.. .++++|.|+++++||+|.......+..| ..+|+++.|+..+.+.|++++.|+.||+||+++ ...++.+.||.
T Consensus 156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~ 234 (311)
T KOG0277|consen 156 SPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG 234 (311)
T ss_pred CCCCCCeEEEccCCceEEEEEecCCCceeEEEec-cceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc
Confidence 9987 9999999999999999984444448999 899999999998999999999999999999998 55788889998
Q ss_pred CeeeeeE---cC-CCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 327 NWLGFSK---CS-NRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 327 ~~~~~~~---~~-d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
..+.+ +| -..+|+|+|.|-+++|||...++..+++.+-|
T Consensus 235 --~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H 277 (311)
T KOG0277|consen 235 --LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH 277 (311)
T ss_pred --eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc
Confidence 66665 33 56789999999999999998777655555444
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=218.96 Aligned_cols=239 Identities=11% Similarity=0.082 Sum_probs=197.2
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
...|++|+|+.++ ..||++..+|.+++|+.+... ...+..| ++++.+|.|+. .+.+|+++ +.|
T Consensus 235 nkdVT~L~Wn~~G----~~LatG~~~G~~riw~~~G~l------~~tl~~H-----kgPI~slKWnk-~G~yilS~-~vD 297 (524)
T KOG0273|consen 235 NKDVTSLDWNNDG----TLLATGSEDGEARIWNKDGNL------ISTLGQH-----KGPIFSLKWNK-KGTYILSG-GVD 297 (524)
T ss_pred cCCcceEEecCCC----CeEEEeecCcEEEEEecCchh------hhhhhcc-----CCceEEEEEcC-CCCEEEec-cCC
Confidence 4689999999874 799999999999999987431 1112222 34577899999 55678887 899
Q ss_pred ceEEEEeCC--cceEEEEeeeCC-cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 172 KSIDVYDQD--IHLRTLRTLWYP-SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 172 ~~i~lwd~~--~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
+++-|||.- ...+.+.....+ ..+.+.. ...|++++.|+.|+++-+... .++.++.+| .+.|+++.
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-------~~~F~ts~td~~i~V~kv~~~---~P~~t~~GH-~g~V~alk 366 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQS-------NDEFATSSTDGCIHVCKVGED---RPVKTFIGH-HGEVNALK 366 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEec-------CceEeecCCCceEEEEEecCC---Ccceeeecc-cCceEEEE
Confidence 999999984 333334333344 3466665 468999999999999998876 788999886 79999999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC--------CCCEEEEEECCCeEEEEECcCCcee
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI--------DSNYIYVQGVDYEVFCGQWRESSKV 319 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~--------d~~~l~s~s~D~~i~vwd~~~~~~~ 319 (369)
|+|.| +|+++|.|+|++||........+.+.+| ..+|..+.|+|. ++..+++++.|++|++||+..+.++
T Consensus 367 ~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i 445 (524)
T KOG0273|consen 367 WNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI 445 (524)
T ss_pred ECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence 99999 9999999999999999999999999999 999999999983 2457999999999999999999999
Q ss_pred EEEEcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 320 FAFRGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 320 ~~~~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.|..|. +...+..+++|+++|+|+.||.|.+|+.++++.
T Consensus 446 ~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 446 HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 9998887 334455577999999999999999999998864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=230.58 Aligned_cols=246 Identities=13% Similarity=0.145 Sum_probs=199.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+..|...|.++.|+|.+ .-+|++ =-+|+|.+|+.++..- ..++.+ .+..+....|-+ ..+.++++
T Consensus 9 ~~~rSdRVKsVd~HPte---Pw~la~-LynG~V~IWnyetqtm---VksfeV-------~~~PvRa~kfia-RknWiv~G 73 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTE---PWILAA-LYNGDVQIWNYETQTM---VKSFEV-------SEVPVRAAKFIA-RKNWIVTG 73 (794)
T ss_pred hhccCCceeeeecCCCC---ceEEEe-eecCeeEEEeccccee---eeeeee-------cccchhhheeee-ccceEEEe
Confidence 34588999999999986 555555 4568999999986521 112222 222344677776 55678887
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
+.|..|++|+.++..+.-....|+.-+..+..+|..| .++++|+|-+|++||....- .+.+++.+| ...|.++
T Consensus 74 -sDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P---~vLtsSDDm~iKlW~we~~w--a~~qtfeGH-~HyVMqv 146 (794)
T KOG0276|consen 74 -SDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLP---YVLTSSDDMTIKLWDWENEW--ACEQTFEGH-EHYVMQV 146 (794)
T ss_pred -cCCceEEEEecccceeeEEeeccccceeeeeecCCCC---eEEecCCccEEEEeeccCce--eeeeEEcCc-ceEEEEE
Confidence 9999999999876554444455777777777776544 99999999999999998663 788899988 8899999
Q ss_pred EECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC-CCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 248 CSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI-DSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 248 ~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~-d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+|+|.. .+|+++-|+|||||.+....+..++.+| ...|+++.|-+. |..+|+||+.|.+|+|||.++..|++++.|
T Consensus 147 ~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG 225 (794)
T KOG0276|consen 147 AFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG 225 (794)
T ss_pred EecCCCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence 999998 9999999999999999999999999999 999999999762 345899999999999999999999999999
Q ss_pred CCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 325 DSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 325 ~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|. .++.. .|.=.+|+|||+||+++||+..|-+
T Consensus 226 Ht--~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 226 HT--NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred cc--ccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence 98 55554 3466789999999999999988754
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=216.28 Aligned_cols=242 Identities=17% Similarity=0.208 Sum_probs=194.5
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+-.|++.|.+|.|+.+ +..|++++.++++.+||..++.. ...+.+ |..+ -..|.|- +...|+
T Consensus 270 ~tl~~HkgPI~slKWnk~----G~yilS~~vD~ttilwd~~~g~~---~q~f~~--~s~~-----~lDVdW~--~~~~F~ 333 (524)
T KOG0273|consen 270 STLGQHKGPIFSLKWNKK----GTYILSGGVDGTTILWDAHTGTV---KQQFEF--HSAP-----ALDVDWQ--SNDEFA 333 (524)
T ss_pred hhhhccCCceEEEEEcCC----CCEEEeccCCccEEEEeccCceE---EEeeee--ccCC-----ccceEEe--cCceEe
Confidence 345689999999999886 37899999999999999975521 111221 2111 0135554 345688
Q ss_pred EEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 166 VARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
++ +.|+.|+++.++ .++.++.. |...++.+.+ +|.+..|+++|+|++++||.+... .+.+.+..| ...
T Consensus 334 ts-~td~~i~V~kv~~~~P~~t~~G--H~g~V~alk~---n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~H-ske 403 (524)
T KOG0273|consen 334 TS-STDGCIHVCKVGEDRPVKTFIG--HHGEVNALKW---NPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAH-SKE 403 (524)
T ss_pred ec-CCCceEEEEEecCCCcceeeec--ccCceEEEEE---CCCCceEEEecCCCeeEeeecCCC---cchhhhhhh-ccc
Confidence 88 899999999765 55665544 6667777775 344668888999999999998877 788888776 689
Q ss_pred EEEEEECCCC----------cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 244 LYAVCSSSTG----------NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 244 v~~v~~sp~g----------~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
|+.+.|+|+| .+++++.|++|++||+..+.++++|..| +.+|.+|+||| +++++|+|+.|+.|.+|+.
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~-~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSP-NGRYLASGSLDGCVHIWST 481 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecC-CCcEEEecCCCCeeEeccc
Confidence 9999999975 5899999999999999999999999999 99999999999 9999999999999999999
Q ss_pred cCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 314 RESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 314 ~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+++++.+.+++......+....+|+.|..+-.|+.+.+-|++
T Consensus 482 ~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 482 KTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999887733333335588999999999999998875
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=229.05 Aligned_cols=257 Identities=17% Similarity=0.111 Sum_probs=191.7
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..|..+||.+++|-.++ -..+|.+.+.+.+++++..+... .-+.+|... +.+++... .+-+++++
T Consensus 319 ivG~ndEI~Dm~~lG~e---~~~laVATNs~~lr~y~~~~~~c------~ii~GH~e~-----vlSL~~~~-~g~llat~ 383 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLGPE---ESHLAVATNSPELRLYTLPTSYC------QIIPGHTEA-----VLSLDVWS-SGDLLATG 383 (775)
T ss_pred hcCCchhheeeeecCCc---cceEEEEeCCCceEEEecCCCce------EEEeCchhh-----eeeeeecc-cCcEEEEe
Confidence 45888999999997543 35778888889999997765421 133444432 33566333 23478888
Q ss_pred ecccceEEEEeCCc-ceEEEE---eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee------e
Q 017601 168 RSFSKSIDVYDQDI-HLRTLR---TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI------C 237 (369)
Q Consensus 168 ~s~d~~i~lwd~~~-~~~~~~---~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~------~ 237 (369)
|.|+++++|..+. ..+.+. ...|...+..+.....+ ...|+++|.|+++++|++...+.......+ .
T Consensus 384 -sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~--asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 384 -SKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG--ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred -cCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC--ccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 9999999996632 111111 11133333333322222 257888999999999999863211111111 1
Q ss_pred ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 238 GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 238 ~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
.| ...|+|++++|+. ++||||.|++.+||++...+.+.++.|| +..|.+|.|+| ..+.++|+|.|.+|+||.+.+.
T Consensus 461 aH-dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 461 AH-DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTF 537 (775)
T ss_pred hh-cccccceEecCCCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEecc-ccceeEeccCCceEEEEEeccc
Confidence 22 5889999999999 9999999999999999999999999999 99999999999 8899999999999999999999
Q ss_pred ceeEEEEcCCCeeeeeEcC---CCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 317 SKVFAFRGDSNWLGFSKCS---NRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 317 ~~~~~~~g~~~~~~~~~~~---d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
.|+.+|.||. ..+.++. +|..|+|++.||.|++|+++++++ +.++.+|.
T Consensus 538 SClkT~eGH~--~aVlra~F~~~~~qliS~~adGliKlWnikt~eC-~~tlD~H~ 589 (775)
T KOG0319|consen 538 SCLKTFEGHT--SAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC-EMTLDAHN 589 (775)
T ss_pred eeeeeecCcc--ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh-hhhhhhcc
Confidence 9999999999 5555533 899999999999999999999975 45677664
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=240.18 Aligned_cols=252 Identities=15% Similarity=0.171 Sum_probs=189.3
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
...|.+.|.+++|+|++ .++|+++.++.|++|+............+.... ......+.+++|+|.....+|++
T Consensus 479 ~~~~~~~V~~i~fs~dg----~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDG----EFFATAGVNKKIKIFECESIIKDGRDIHYPVVE---LASRSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred ccCCCCcEEEEEECCCC----CEEEEEeCCCEEEEEECCcccccccccccceEE---ecccCceeeEEeccCCCCEEEEE
Confidence 34699999999999984 689999999999999976421100000000000 00112356899998767788888
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
+.|++|+|||............|...+..+.+.+ +++..|++++.|++|++||++++ .++..+..+ ..+.++
T Consensus 552 -~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p--~~~~~L~Sgs~Dg~v~iWd~~~~---~~~~~~~~~--~~v~~v 623 (793)
T PLN00181 552 -NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS--ADPTLLASGSDDGSVKLWSINQG---VSIGTIKTK--ANICCV 623 (793)
T ss_pred -eCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC--CCCCEEEEEcCCCEEEEEECCCC---cEEEEEecC--CCeEEE
Confidence 8999999999864322222223445555555433 24567889999999999999987 777777766 789999
Q ss_pred EEC-CCC-cEEEEeCCCcEEEEeCCCce-eeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC------Cce
Q 017601 248 CSS-STG-NIAVAGADRTVTIYDPRRWS-ALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE------SSK 318 (369)
Q Consensus 248 ~~s-p~g-~lasgs~D~~v~vwD~~~~~-~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~------~~~ 318 (369)
+|+ ++| .|++|+.|++|++||+++.. ++..+.+| ...|+++.|. ++.+|+++|.|++|++||++. ..+
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~ 700 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETP 700 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcc
Confidence 995 457 99999999999999999865 57788899 9999999996 578999999999999999974 357
Q ss_pred eEEEEcCCCeee-eeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 319 VFAFRGDSNWLG-FSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 319 ~~~~~g~~~~~~-~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+..+.+|..... +...+++.+|++|+.|+.|++|+....
T Consensus 701 l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 701 LHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred eEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 788999985433 333568899999999999999997644
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=214.09 Aligned_cols=268 Identities=15% Similarity=0.127 Sum_probs=197.2
Q ss_pred eEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC
Q 017601 52 HLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD 131 (369)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~ 131 (369)
.||.++.. ++.+|+..++.....++..... ....+.+|+|.|-|+.|.. .++.+++++.+|++||++++ +.
T Consensus 199 gVYClQYD-D~kiVSGlrDnTikiWD~n~~~-c~~~L~GHtGSVLCLqyd~------rviisGSSDsTvrvWDv~tg-e~ 269 (499)
T KOG0281|consen 199 GVYCLQYD-DEKIVSGLRDNTIKIWDKNSLE-CLKILTGHTGSVLCLQYDE------RVIVSGSSDSTVRVWDVNTG-EP 269 (499)
T ss_pred ceEEEEec-chhhhcccccCceEEeccccHH-HHHhhhcCCCcEEeeeccc------eEEEecCCCceEEEEeccCC-ch
Confidence 34444532 2445566666554333433333 2223679999999999964 59999999999999999976 21
Q ss_pred CccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcce--EEEEe-eeCCcceeeeccCCCCCCCC
Q 017601 132 VDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL--RTLRT-LWYPSSLNFVQNLSPVNGGP 208 (369)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~~~ 208 (369)
+. .+-.|- +.+.++.|+. ++++++ |.|.+|.+||..... ...+. ..|..+++.+++ ++.
T Consensus 270 l~----tlihHc-----eaVLhlrf~n---g~mvtc-SkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf-----d~k 331 (499)
T KOG0281|consen 270 LN----TLIHHC-----EAVLHLRFSN---GYMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-----DDK 331 (499)
T ss_pred hh----HHhhhc-----ceeEEEEEeC---CEEEEe-cCCceeEEEeccCchHHHHHHHHhhhhhheeeecc-----ccc
Confidence 11 111111 1245788865 578888 999999999986322 11111 235556666664 456
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceE
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
++++++.|.+|++|++.+. .++.++.+| ...|-|+-+ .| ++++||.|.+|++||+..|.++..++|| +.-|.
T Consensus 332 yIVsASgDRTikvW~~st~---efvRtl~gH-kRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH-EeLvR 404 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTC---EFVRTLNGH-KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH-EELVR 404 (499)
T ss_pred eEEEecCCceEEEEeccce---eeehhhhcc-cccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch-HHhhh
Confidence 8999999999999999999 899999887 667777654 56 8999999999999999999999999999 99999
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECcCCc---------eeEEEEcCCCeeeeeEcC-CCCEEEEEeCCCcEEEEECCCC
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWRESS---------KVFAFRGDSNWLGFSKCS-NRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~---------~~~~~~g~~~~~~~~~~~-d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
++.|.. +.++||+.||+|++||+..+. |+.++..|+ ..+..+. |...|++.+.|.+|-|||+-++
T Consensus 405 ciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs--gRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 405 CIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS--GRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred heeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhcc--ceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 999965 899999999999999998742 444455555 2233333 7888999999999999998776
Q ss_pred c
Q 017601 358 E 358 (369)
Q Consensus 358 ~ 358 (369)
-
T Consensus 480 ~ 480 (499)
T KOG0281|consen 480 P 480 (499)
T ss_pred C
Confidence 3
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-29 Score=217.12 Aligned_cols=234 Identities=14% Similarity=0.143 Sum_probs=181.0
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
....|+|+.|..+ .+.|+..+.+|.+||...- ...+.+.+|. |.+.++.|.. ..++++ |.
T Consensus 196 ~skgVYClQYDD~------kiVSGlrDnTikiWD~n~~-----~c~~~L~GHt-----GSVLCLqyd~---rviisG-SS 255 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE------KIVSGLRDNTIKIWDKNSL-----ECLKILTGHT-----GSVLCLQYDE---RVIVSG-SS 255 (499)
T ss_pred cCCceEEEEecch------hhhcccccCceEEeccccH-----HHHHhhhcCC-----CcEEeeeccc---eEEEec-CC
Confidence 4578999999653 7888889999999998743 2344455553 3455777754 366666 99
Q ss_pred cceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 171 SKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 171 d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
|.+|++||.. ..+.++. .|...+--+. ++ .+.+++++.|.++.+||+.......+.+.+.+| ...|+.+.
T Consensus 256 DsTvrvWDv~tge~l~tli--hHceaVLhlr---f~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVd 327 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLNTLI--HHCEAVLHLR---FS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVD 327 (499)
T ss_pred CceEEEEeccCCchhhHHh--hhcceeEEEE---Ee--CCEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeec
Confidence 9999999975 3333321 1222222222 11 369999999999999999877444444556676 78999999
Q ss_pred ECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe
Q 017601 249 SSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW 328 (369)
Q Consensus 249 ~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~ 328 (369)
|+.. +++++|.|++|++|++.+++.+.++.+| +..|-++.+ .+++++|||.|.+|++||+..|.+++.++||..
T Consensus 328 fd~k-yIVsASgDRTikvW~~st~efvRtl~gH-kRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe- 401 (499)
T KOG0281|consen 328 FDDK-YIVSASGDRTIKVWSTSTCEFVRTLNGH-KRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE- 401 (499)
T ss_pred cccc-eEEEecCCceEEEEeccceeeehhhhcc-cccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHH-
Confidence 8533 9999999999999999999999999999 888888877 559999999999999999999999999999982
Q ss_pred eeeeEcC--CCCEEEEEeCCCcEEEEECCCCcch
Q 017601 329 LGFSKCS--NRDVLGGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 329 ~~~~~~~--d~~~l~sgs~dg~I~iWd~~~~~~~ 360 (369)
+..|- |.+.|+||..||+|+|||+.++..+
T Consensus 402 --LvRciRFd~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 402 --LVRCIRFDNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred --hhhheeecCceeeeccccceEEEEecccccCC
Confidence 22332 8899999999999999999887643
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=224.42 Aligned_cols=279 Identities=16% Similarity=0.208 Sum_probs=206.3
Q ss_pred eEEEEEEeCCchhhhcC-CCccccccCccccc-ccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC
Q 017601 52 HLYKLQVMMDDWFVSEG-KDSLLIPEQTPVMD-SSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG 129 (369)
Q Consensus 52 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~ 129 (369)
.+..+++..++..+... .+.+.+.+...... ....++.+|...|++++|+|++ ..+++++.++++++||+....
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~----~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG----SYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC----cEEEEecCCceEEEeeccCCC
Confidence 34445666666665333 34444433332222 1333457899999999999984 699999999999999994321
Q ss_pred CCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCC
Q 017601 130 KDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGG 207 (369)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~ 207 (369)
...+.+.+|... +.+++|+|.+ .+++++ +.|++|+|||... .++.+.. |...+..+. +++++
T Consensus 237 ----~~~~~l~gH~~~-----v~~~~f~p~g-~~i~Sg-s~D~tvriWd~~~~~~~~~l~~--hs~~is~~~---f~~d~ 300 (456)
T KOG0266|consen 237 ----RNLKTLKGHSTY-----VTSVAFSPDG-NLLVSG-SDDGTVRIWDVRTGECVRKLKG--HSDGISGLA---FSPDG 300 (456)
T ss_pred ----eEEEEecCCCCc-----eEEEEecCCC-CEEEEe-cCCCcEEEEeccCCeEEEeeec--cCCceEEEE---ECCCC
Confidence 112334455433 4689999976 788888 9999999999874 4444433 444555554 34578
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC-cEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccC-
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD-ILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKY- 284 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~- 284 (369)
..|++++.|+.|+|||+.++... ++..+...... ++++++|+|++ +++++..|+++++||++++.....+.+| ..
T Consensus 301 ~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~-~~~ 378 (456)
T KOG0266|consen 301 NLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH-SNL 378 (456)
T ss_pred CEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc-CCc
Confidence 88888988999999999998311 45555544223 69999999999 9999999999999999999999999999 54
Q ss_pred --ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC-CCeeeeeE---cCCCCEEEEEe--CCCcEEEEECC
Q 017601 285 --EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD-SNWLGFSK---CSNRDVLGGWS--DSGSIFVADVV 355 (369)
Q Consensus 285 --~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~-~~~~~~~~---~~d~~~l~sgs--~dg~I~iWd~~ 355 (369)
.+.+..+++ .+.++++++.|+.|++||+.++..+..+.+| . ..+.. .+...++++++ .|+.+++|...
T Consensus 379 ~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~--~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 379 VRCIFSPTLST-GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSK--AAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ceeEecccccC-CCCeEEEEeCCceEEEEeCCccchhhhhcCCCC--CceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 344555677 8999999999999999999999888999999 4 22222 33778899888 78999999753
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=219.55 Aligned_cols=244 Identities=16% Similarity=0.150 Sum_probs=189.4
Q ss_pred ccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 85 MLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 85 ~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
+..+.+|+..|.+|.|.|-. ..+++|++.++.|++|++-... .......+|..+ +..++|++ .+..+
T Consensus 207 ~~~~~gH~kgvsai~~fp~~---~hLlLS~gmD~~vklW~vy~~~----~~lrtf~gH~k~-----Vrd~~~s~-~g~~f 273 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKK---GHLLLSGGMDGLVKLWNVYDDR----RCLRTFKGHRKP-----VRDASFNN-CGTSF 273 (503)
T ss_pred eeeccCCccccchhhhccce---eeEEEecCCCceEEEEEEecCc----ceehhhhcchhh-----hhhhhccc-cCCee
Confidence 34467999999999999953 6899999999999999998532 122333445444 34799999 45567
Q ss_pred EEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCC-CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC
Q 017601 165 AVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGG-PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~ 241 (369)
.++ |+|+.|++||++ +....+++..-+.++.|-+ ++ +.+++++.|+.|+.||+|++ +.++.+..+ -
T Consensus 274 LS~-sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~p------d~~n~fl~G~sd~ki~~wDiRs~---kvvqeYd~h-L 342 (503)
T KOG0282|consen 274 LSA-SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHP------DNQNIFLVGGSDKKIRQWDIRSG---KVVQEYDRH-L 342 (503)
T ss_pred eee-ecceeeeeeccccceEEEEEecCCCceeeecCC------CCCcEEEEecCCCcEEEEeccch---HHHHHHHhh-h
Confidence 777 899999999985 5556665554555555543 34 68889999999999999999 788888766 7
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee--------------------------------------------
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS-------------------------------------------- 276 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~-------------------------------------------- 276 (369)
+.|+.+.|-++| ++++.++|++++||+.+...++.
T Consensus 343 g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk 422 (503)
T KOG0282|consen 343 GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK 422 (503)
T ss_pred hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH
Confidence 899999999999 99999999999999987432211
Q ss_pred --eccccc-cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC-CeeeeeEcC-CCCEEEEEeCCCcEEE
Q 017601 277 --RWVHCS-KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS-NWLGFSKCS-NRDVLGGWSDSGSIFV 351 (369)
Q Consensus 277 --~~~~h~-~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~-~~~~~~~~~-d~~~l~sgs~dg~I~i 351 (369)
.++||. .+.-..|.||| ||++|+||..||.+.+||+++-+++..+.+|. ...++..-| ....+|+++.||.|++
T Consensus 423 kK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKI 501 (503)
T ss_pred hhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEe
Confidence 123441 13346799999 99999999999999999999999999999985 222333344 6788999999999999
Q ss_pred EE
Q 017601 352 AD 353 (369)
Q Consensus 352 Wd 353 (369)
|+
T Consensus 502 wd 503 (503)
T KOG0282|consen 502 WD 503 (503)
T ss_pred cC
Confidence 96
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=202.17 Aligned_cols=277 Identities=17% Similarity=0.222 Sum_probs=199.6
Q ss_pred EeCCeEEEEEEeCCchhhhc-CCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEec
Q 017601 48 ASGCHLYKLQVMMDDWFVSE-GKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLD 126 (369)
Q Consensus 48 as~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~ 126 (369)
.--+.||++...+...++.. |.+...-.+++.... ...++.+|++.|.++.|+.|+ .+||++|-+|.|++|+..
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-~~~eltgHKDSVt~~~Fshdg----tlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDG----TLLATGDMSGKVLVFKVS 136 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-ceeEecCCCCceEEEEEccCc----eEEEecCCCccEEEEEcc
Confidence 34455667777776666644 344433333333343 556688999999999999984 899999999999999998
Q ss_pred CCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCC
Q 017601 127 TSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPV 204 (369)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~ 204 (369)
++.. ...+. ....+..| +.|+| ...+++.+ +.|+.+-+|.++.. .+.+.. +...+ .+..+.
T Consensus 137 tg~~-----~~~~~---~e~~dieW--l~WHp-~a~illAG-~~DGsvWmw~ip~~~~~kv~~G--h~~~c---t~G~f~ 199 (399)
T KOG0296|consen 137 TGGE-----QWKLD---QEVEDIEW--LKWHP-RAHILLAG-STDGSVWMWQIPSQALCKVMSG--HNSPC---TCGEFI 199 (399)
T ss_pred cCce-----EEEee---cccCceEE--EEecc-cccEEEee-cCCCcEEEEECCCcceeeEecC--CCCCc---cccccc
Confidence 7632 12221 11222235 89999 44466666 89999999998753 222222 22222 223345
Q ss_pred CCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC--------------------------------------------
Q 017601 205 NGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV-------------------------------------------- 240 (369)
Q Consensus 205 ~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~-------------------------------------------- 240 (369)
|+|.+++++.+||+|++||.+++ +++.++....
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg---~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTG---QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred CCCceEEEEecCceEEEEecCCC---ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 67889999999999999999988 5655544100
Q ss_pred ------CCcEEEEEECCCC----cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 241 ------GDILYAVCSSSTG----NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 241 ------~~~v~~v~~sp~g----~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
...+.|+.|.|-. +.|+|+-||+|.|||+.+.++.+.+. | ...|+.+.|-+ ..+|++++.||.|+.
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-h-e~~V~~l~w~~--t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-H-EDGVTKLKWLN--TDYLLTACANGKVRQ 352 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-C-CCceEEEEEcC--cchheeeccCceEEe
Confidence 0112333344433 77899999999999998877665554 6 78899999987 468889999999999
Q ss_pred EECcCCceeEEEEcCCCeeeee---EcCCCCEEEEEeCCCcEEEEECC
Q 017601 311 GQWRESSKVFAFRGDSNWLGFS---KCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 311 wd~~~~~~~~~~~g~~~~~~~~---~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
||.+++.+++.+.||. ..+. ..++.++++++|.|++.+|+++.
T Consensus 353 wDaRtG~l~~~y~GH~--~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 353 WDARTGQLKFTYTGHQ--MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeccccceEEEEecCc--hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999998 5444 36799999999999999999874
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-27 Score=194.81 Aligned_cols=242 Identities=17% Similarity=0.136 Sum_probs=186.8
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+..|++.|+.++|.-|+ ....++.++.+|++|+...+. -...|.-.++ . +..++.+. +...+++|
T Consensus 13 l~~~qgaV~avryN~dG----nY~ltcGsdrtvrLWNp~rg~---liktYsghG~--E-----VlD~~~s~-Dnskf~s~ 77 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDG----NYCLTCGSDRTVRLWNPLRGA---LIKTYSGHGH--E-----VLDAALSS-DNSKFASC 77 (307)
T ss_pred ecccccceEEEEEccCC----CEEEEcCCCceEEeecccccc---eeeeecCCCc--e-----eeeccccc-cccccccC
Confidence 45789999999999874 566677788899999987542 1122322111 1 33566666 45678888
Q ss_pred ecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|+.|.+||+. +..+.++. |-..++.+. |+.+...+++++-|.++++||-|+. ..++++.+... ...|.
T Consensus 78 -GgDk~v~vwDV~TGkv~Rr~rg--H~aqVNtV~---fNeesSVv~SgsfD~s~r~wDCRS~-s~ePiQildea-~D~V~ 149 (307)
T KOG0316|consen 78 -GGDKAVQVWDVNTGKVDRRFRG--HLAQVNTVR---FNEESSVVASGSFDSSVRLWDCRSR-SFEPIQILDEA-KDGVS 149 (307)
T ss_pred -CCCceEEEEEcccCeeeeeccc--ccceeeEEE---ecCcceEEEeccccceeEEEEcccC-CCCccchhhhh-cCcee
Confidence 899999999985 55666554 444555555 3344567777889999999999975 33678877655 68899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
++..+ + .|++||.||+++.||+|.|+....+.+| +|+++.||+ |++..+.++.|+++++.|-.+++++..+.|
T Consensus 150 Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 150 SIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred EEEec--ccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 98875 4 8999999999999999999999888877 899999999 999999999999999999999999999999
Q ss_pred CCCeeeeeEcC---CCCEEEEEeCCCcEEEEECCCCc
Q 017601 325 DSNWLGFSKCS---NRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 325 ~~~~~~~~~~~---d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|.+-.--..|. ....+++||+||.|++||+....
T Consensus 224 hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 224 HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred cccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 98421111132 45689999999999999998764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=203.13 Aligned_cols=251 Identities=14% Similarity=0.145 Sum_probs=190.7
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 163 (369)
.+....+|.+.|.+++|--.+. ....+++++.+-++++|..+.+...... .....+|.. ++-+++..+ ++.+
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~~~~~~~~-~~~~~GHk~-----~V~sVsv~~-sgtr 207 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNVGENKVKA-LKVCRGHKR-----SVDSVSVDS-SGTR 207 (423)
T ss_pred eEEEEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecCchhhhhH-HhHhccccc-----ceeEEEecC-CCCe
Confidence 3344679999999888754322 1236788888888998888766332221 122234433 355788888 5668
Q ss_pred EEEEecccceEEEEeCCc----ce--------------------EEEEe-eeCCcceeeeccCCCCCCCCcEEEEEcCCe
Q 017601 164 AAVARSFSKSIDVYDQDI----HL--------------------RTLRT-LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQ 218 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~----~~--------------------~~~~~-~~~~~~v~~~~~~~~~~~~~~lla~s~d~~ 218 (369)
++++ |+|.+++||+... .. .++.+ ..|...+..+.+. +...+.+++.|.+
T Consensus 208 ~~Sg-S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~----d~~v~yS~SwDHT 282 (423)
T KOG0313|consen 208 FCSG-SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS----DATVIYSVSWDHT 282 (423)
T ss_pred EEee-cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc----CCCceEeecccce
Confidence 8888 9999999998210 00 01111 2244555555542 3568899999999
Q ss_pred EEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc---eeeeeccccccCceEEEEEcCC
Q 017601 219 LTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW---SALSRWVHCSKYEITGLSFSSI 294 (369)
Q Consensus 219 v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~---~~~~~~~~h~~~~v~~l~~sp~ 294 (369)
|+.||+.++ +++.++... ..++|++++|.. +||+|+.|+.+++||.|++ -..++|.+| +..|.++.|+|.
T Consensus 283 Ik~WDletg---~~~~~~~~~--ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH-~nwVssvkwsp~ 356 (423)
T KOG0313|consen 283 IKVWDLETG---GLKSTLTTN--KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH-KNWVSSVKWSPT 356 (423)
T ss_pred EEEEEeecc---cceeeeecC--cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc-hhhhhheecCCC
Confidence 999999999 888888877 899999999988 9999999999999999984 245689999 999999999998
Q ss_pred CCCEEEEEECCCeEEEEECcCCc-eeEEEEcCCCeeeeeEc--CCCCEEEEEeCCCcEEEEECC
Q 017601 295 DSNYIYVQGVDYEVFCGQWRESS-KVFAFRGDSNWLGFSKC--SNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 295 d~~~l~s~s~D~~i~vwd~~~~~-~~~~~~g~~~~~~~~~~--~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+..+|+|+|.|+++++||++... .++.+.+|. ..+... .++..|+||+.|++|+|+.-.
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~--DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN--DKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcceeeccCC--ceEEEEeccCCceEEeccCcceEEEeccc
Confidence 88899999999999999999876 899999987 444432 278899999999999998643
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=199.12 Aligned_cols=244 Identities=21% Similarity=0.261 Sum_probs=186.8
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|.+++|+|++ ..+++++.+|.+++|++.... .......+. ..+..+.|+|++ ..++++
T Consensus 5 ~~~h~~~i~~~~~~~~~----~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~-----~~i~~~~~~~~~-~~l~~~ 69 (289)
T cd00200 5 LKGHTGGVTCVAFSPDG----KLLATGSGDGTIKVWDLETGE-----LLRTLKGHT-----GPVRDVAASADG-TYLASG 69 (289)
T ss_pred hcccCCCEEEEEEcCCC----CEEEEeecCcEEEEEEeeCCC-----cEEEEecCC-----cceeEEEECCCC-CEEEEE
Confidence 34899999999999973 688888889999999998542 111222222 224479999954 567777
Q ss_pred ecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|+.|.+||... ....+. .+...+..+.+. +++..+++++.|+.+.+||++++ +.+..+..+ ...+.
T Consensus 70 -~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~-~~~i~ 139 (289)
T cd00200 70 -SSDKTIRLWDLETGECVRTLT--GHTSYVSSVAFS---PDGRILSSSSRDKTIKVWDVETG---KCLTTLRGH-TDWVN 139 (289)
T ss_pred -cCCCeEEEEEcCcccceEEEe--ccCCcEEEEEEc---CCCCEEEEecCCCeEEEEECCCc---EEEEEeccC-CCcEE
Confidence 7899999999864 333332 233344444432 23344555555999999999977 667777654 57899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+++|+|++ ++++++.|+.|++||+++++.+..+..| ...|.++.|+| +++.+++++.|+.|++||++.++.+..+.+
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 217 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRG 217 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhh
Confidence 99999999 8888888999999999999999999999 88999999999 998999999999999999999888888877
Q ss_pred CCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 325 DSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 325 ~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|.. ...+...+++.++++++.||.|++||+.+++
T Consensus 218 ~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 218 HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 662 2334445578899999989999999998764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=219.40 Aligned_cols=252 Identities=16% Similarity=0.170 Sum_probs=188.5
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC----------------------------C-CCccc-----
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG----------------------------K-DVDRL----- 135 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~----------------------------~-~~~~~----- 135 (369)
.|++.|+++.||+|+ ++||+++.||-|+||.+.... . .+.+.
T Consensus 265 ah~gaIw~mKFS~DG----KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG----KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccCCcEEEEEeCCCC----ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 799999999999994 899999999999999987610 0 00000
Q ss_pred ------cccccCCCCCCCC----------CCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeec
Q 017601 136 ------TYSVLPQDCGVGE----------GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQ 199 (369)
Q Consensus 136 ------~~~~~~~~~~~~~----------~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~ 199 (369)
...+........+ +.+..|+|+. .++|+++ |.|+||+||+++. ...+..+.|+.-|++++
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSS-SMDKTVRLWh~~~-~~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSS-SMDKTVRLWHPGR-KECLKVFSHNDFVTCVA 416 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEec-cccccEEeecCCC-cceeeEEecCCeeEEEE
Confidence 0000000000011 1244677776 4577887 9999999999872 33455666777677776
Q ss_pred cCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeec
Q 017601 200 NLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRW 278 (369)
Q Consensus 200 ~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~ 278 (369)
+.|. |+.+|++++-|+.||||++... +.+.-...+ .-|+++||.||| ..+.|+.+|.+++|+.+..+....+
T Consensus 417 FnPv--DDryFiSGSLD~KvRiWsI~d~---~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 417 FNPV--DDRYFISGSLDGKVRLWSISDK---KVVDWNDLR--DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred eccc--CCCcEeecccccceEEeecCcC---eeEeehhhh--hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 6653 6789999999999999999876 555555555 899999999999 9999999999999999887766554
Q ss_pred cccc-------cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCc
Q 017601 279 VHCS-------KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGS 348 (369)
Q Consensus 279 ~~h~-------~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~ 348 (369)
.-++ ...|+++.|.|.+...++..+.|..|||+|.+...++..|+|..+..+... ..||++|+++++|..
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence 3210 127999999997888888899999999999999889999988764322111 349999999999999
Q ss_pred EEEEECCC
Q 017601 349 IFVADVVA 356 (369)
Q Consensus 349 I~iWd~~~ 356 (369)
|+||+...
T Consensus 570 VYiW~~~~ 577 (712)
T KOG0283|consen 570 VYIWKNDS 577 (712)
T ss_pred EEEEeCCC
Confidence 99999743
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-25 Score=228.77 Aligned_cols=281 Identities=15% Similarity=0.147 Sum_probs=196.4
Q ss_pred eCCeEEEEEEeCCchhh-hcCCCccccccCccc-------ccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcE
Q 017601 49 SGCHLYKLQVMMDDWFV-SEGKDSLLIPEQTPV-------MDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHL 120 (369)
Q Consensus 49 s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v 120 (369)
....|..+++...+.++ ..+.++...-++.+. .+.... ...+...|.+++|++.. ...+++++.+|.|
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~---~~~las~~~Dg~v 557 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVV-ELASRSKLSGICWNSYI---KSQVASSNFEGVV 557 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceE-EecccCceeeEEeccCC---CCEEEEEeCCCeE
Confidence 45557777777766665 445554433222211 110111 22345789999998752 3689999999999
Q ss_pred EEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeee
Q 017601 121 IVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFV 198 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~ 198 (369)
++||+.+.. ....+..|. ..+.+++|+|.++.+++++ +.|++|++||... .+..+. ....+..+
T Consensus 558 ~lWd~~~~~-----~~~~~~~H~-----~~V~~l~~~p~~~~~L~Sg-s~Dg~v~iWd~~~~~~~~~~~---~~~~v~~v 623 (793)
T PLN00181 558 QVWDVARSQ-----LVTEMKEHE-----KRVWSIDYSSADPTLLASG-SDDGSVKLWSINQGVSIGTIK---TKANICCV 623 (793)
T ss_pred EEEECCCCe-----EEEEecCCC-----CCEEEEEEcCCCCCEEEEE-cCCCEEEEEECCCCcEEEEEe---cCCCeEEE
Confidence 999987541 112223332 3466899998677788888 8999999999863 233332 22233333
Q ss_pred ccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCC------c
Q 017601 199 QNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRR------W 272 (369)
Q Consensus 199 ~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~------~ 272 (369)
.+.+ +++..|++++.|++|++||++... .++..+.+| ...|++++|.+...|++++.|++|++||++. +
T Consensus 624 ~~~~--~~g~~latgs~dg~I~iwD~~~~~--~~~~~~~~h-~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~ 698 (793)
T PLN00181 624 QFPS--ESGRSLAFGSADHKVYYYDLRNPK--LPLCTMIGH-SKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINE 698 (793)
T ss_pred EEeC--CCCCEEEEEeCCCeEEEEECCCCC--ccceEecCC-CCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCC
Confidence 3211 346688889999999999998762 245566655 6899999997433999999999999999984 3
Q ss_pred eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE-------------cCCC-eeeeeEcCCCC
Q 017601 273 SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR-------------GDSN-WLGFSKCSNRD 338 (369)
Q Consensus 273 ~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~-------------g~~~-~~~~~~~~d~~ 338 (369)
.++.++.+| ...+..+.|+| ++.+|++|+.|++|++|+......+..+. .+.. ...+...+++.
T Consensus 699 ~~l~~~~gh-~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~ 776 (793)
T PLN00181 699 TPLHSFMGH-TNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS 776 (793)
T ss_pred cceEEEcCC-CCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC
Confidence 678889999 99999999999 99999999999999999987654433321 1221 12233356899
Q ss_pred EEEEEeCCCcEEEEEC
Q 017601 339 VLGGWSDSGSIFVADV 354 (369)
Q Consensus 339 ~l~sgs~dg~I~iWd~ 354 (369)
.|++|+.||.|+||++
T Consensus 777 ~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 777 TLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecCCCcEEEEec
Confidence 9999999999999986
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=188.57 Aligned_cols=259 Identities=14% Similarity=0.144 Sum_probs=193.4
Q ss_pred EEEEeCCeEEEEEEeCCchhhhc-CCCccccccCcccccc-cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEE
Q 017601 45 VYIASGCHLYKLQVMMDDWFVSE-GKDSLLIPEQTPVMDS-SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIV 122 (369)
Q Consensus 45 ~~~as~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~ 122 (369)
-+--...+|-++.+.+++..+.. +... .+-.+....++ .+...-+|+..|.++.|..+ +.-+++++.+|.++|
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d----grWMyTgseDgt~kI 109 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD----GRWMYTGSEDGTVKI 109 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCceeEEeccCCceEEEEEeec----CeEEEecCCCceEEE
Confidence 34445666777788777777644 3332 22233333433 34456799999999999887 489999999999999
Q ss_pred EEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCC
Q 017601 123 SKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLS 202 (369)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~ 202 (369)
||+.... -...|... . .+..+..+| ++..+.++ -.++.|++||+......-... |..-.+++...
T Consensus 110 WdlR~~~---~qR~~~~~---s-----pVn~vvlhp-nQteLis~-dqsg~irvWDl~~~~c~~~li--Pe~~~~i~sl~ 174 (311)
T KOG0315|consen 110 WDLRSLS---CQRNYQHN---S-----PVNTVVLHP-NQTELISG-DQSGNIRVWDLGENSCTHELI--PEDDTSIQSLT 174 (311)
T ss_pred EeccCcc---cchhccCC---C-----CcceEEecC-CcceEEee-cCCCcEEEEEccCCccccccC--CCCCcceeeEE
Confidence 9997521 11123221 1 255899999 55667777 788999999987543332221 22223444334
Q ss_pred CCCCCCcEEEEEcCCeEEEEeCCcccC---CceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc-eeeee
Q 017601 203 PVNGGPNMLAVTEGCQLTIWDLRMKEN---GGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW-SALSR 277 (369)
Q Consensus 203 ~~~~~~~lla~s~d~~v~iwD~~~~~~---~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~-~~~~~ 277 (369)
..+|+..++++..-|.+.+|++-.... ..++..++.| ...+..+.|||++ +||++|.|++++||+..+. +....
T Consensus 175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah-~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~ 253 (311)
T KOG0315|consen 175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH-NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELV 253 (311)
T ss_pred EcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc-cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEE
Confidence 457788888888899999999875432 2345556655 6889999999999 9999999999999999987 66678
Q ss_pred ccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 278 WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 278 ~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
+++| +..+..++||. |+.||+++|.|+++++||+..++.++.+.||.
T Consensus 254 l~gh-~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 254 LTGH-QRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred eecC-CceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcc
Confidence 8999 99999999999 99999999999999999999999999999987
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=214.54 Aligned_cols=203 Identities=14% Similarity=0.236 Sum_probs=174.0
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCC-cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYP-SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~-~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
+-++.|+|..+-++++ -+.|.|+||+.++ .++.+....-| ....|+. ..+.++++++|.+|++|+..+.
T Consensus 16 VKsVd~HPtePw~la~--LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia------RknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAA--LYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA------RKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred eeeeecCCCCceEEEe--eecCeeEEEecccceeeeeeeecccchhhheeee------ccceEEEecCCceEEEEecccc
Confidence 4479999988755553 6999999998763 45666544433 3455665 2569999999999999999999
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECC
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
..++.|..| .+.|.|++.+|.. ++.++|+|-+||+||-.+ +.+.+++.|| ...|.+++|+|.|.+.+||+|.|
T Consensus 88 ---ekV~~FeAH-~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 88 ---EKVKTFEAH-SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred ---eeeEEeecc-ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEEEEEecCCCccceeeeecc
Confidence 778888866 6999999999999 999999999999999987 7888999999 99999999999999999999999
Q ss_pred CeEEEEECcCCceeEEEEcCCCeeeeeE---cC--CCCEEEEEeCCCcEEEEECCCCcchhhhcccCCC
Q 017601 306 YEVFCGQWRESSKVFAFRGDSNWLGFSK---CS--NRDVLGGWSDSGSIFVADVVAKENEISALKGLVN 369 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~--d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~~ 369 (369)
++|++|.+..+.+.+++.||. .++.. .+ |..+|+||++|.+|+|||..++. .+++|+||+|
T Consensus 163 rTVKVWslgs~~~nfTl~gHe--kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-CV~TLeGHt~ 228 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHE--KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-CVQTLEGHTN 228 (794)
T ss_pred ccEEEEEcCCCCCceeeeccc--cCcceEEeccCCCcceEEecCCCceEEEeecchHH-HHHHhhcccc
Confidence 999999999999999999999 55544 22 67799999999999999998875 5899999986
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=195.22 Aligned_cols=239 Identities=21% Similarity=0.259 Sum_probs=183.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
...|...+..+.|++++ ..+++++.+|.+++|++..... ...+..+. ..+.+++|+|. ..+++++
T Consensus 47 ~~~~~~~i~~~~~~~~~----~~l~~~~~~~~i~i~~~~~~~~-----~~~~~~~~-----~~i~~~~~~~~-~~~~~~~ 111 (289)
T cd00200 47 LKGHTGPVRDVAASADG----TYLASGSSDKTIRLWDLETGEC-----VRTLTGHT-----SYVSSVAFSPD-GRILSSS 111 (289)
T ss_pred EecCCcceeEEEECCCC----CEEEEEcCCCeEEEEEcCcccc-----eEEEeccC-----CcEEEEEEcCC-CCEEEEe
Confidence 45788899999999973 5788888899999999985411 11122221 23568999995 4566666
Q ss_pred ecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|+.|.+||... ....+. .+...+..+.+. +++..+++++.|+.|++||++++ +.+..+..+ ...+.
T Consensus 112 -~~~~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~---~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~-~~~i~ 181 (289)
T cd00200 112 -SRDKTIKVWDVETGKCLTTLR--GHTDWVNSVAFS---PDGTFVASSSQDGTIKLWDLRTG---KCVATLTGH-TGEVN 181 (289)
T ss_pred -cCCCeEEEEECCCcEEEEEec--cCCCcEEEEEEc---CcCCEEEEEcCCCcEEEEEcccc---ccceeEecC-ccccc
Confidence 6799999999863 222222 233344444432 33334444445999999999977 666677665 56899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+++|+|++ .+++++.|+.|++||+++++.+..+..| ...+.++.|+| ++.++++++.|+.|++||+.+++....+.+
T Consensus 182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 259 (289)
T cd00200 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH-ENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSG 259 (289)
T ss_pred eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc-CCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence 99999999 9999999999999999999999999888 88999999999 888888888899999999999888888887
Q ss_pred CCC-eeeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 325 DSN-WLGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 325 ~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
|.. ...+...+++.+|++++.||.|++|+
T Consensus 260 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 260 HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 762 23344456889999999999999996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=192.03 Aligned_cols=277 Identities=13% Similarity=0.157 Sum_probs=201.6
Q ss_pred EEEeCCeEEEEEEeCCchhh-hcCCCc-cccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEE
Q 017601 46 YIASGCHLYKLQVMMDDWFV-SEGKDS-LLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVS 123 (369)
Q Consensus 46 ~~as~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~ 123 (369)
.......||.+++.+.++.+ ..|.+- ++.|..-+..+ ..-.+.+|.+.|..+.|++|+ ..+.|++.|.+++.|
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-N~~~lkgHsgAVM~l~~~~d~----s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-NFWVLKGHSGAVMELHGMRDG----SHILSCGTDKTVRGW 117 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc-ceeeeccccceeEeeeeccCC----CEEEEecCCceEEEE
Confidence 33444556666877776666 445543 33443222222 112245999999999999985 688888888999999
Q ss_pred EecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccC
Q 017601 124 KLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNL 201 (369)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~ 201 (369)
|..++. ..+..+.|..- +..++-+..+..++.++ +.|++++|||..+ .++++.......++.|-+
T Consensus 118 D~~tG~-----~~rk~k~h~~~-----vNs~~p~rrg~~lv~Sg-sdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-- 184 (338)
T KOG0265|consen 118 DAETGK-----RIRKHKGHTSF-----VNSLDPSRRGPQLVCSG-SDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-- 184 (338)
T ss_pred ecccce-----eeehhccccce-----eeecCccccCCeEEEec-CCCceEEEEeecccchhhccccceeEEEEEecc--
Confidence 999772 22333333321 22344334455666666 9999999999862 233321111223344443
Q ss_pred CCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc----eeee
Q 017601 202 SPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW----SALS 276 (369)
Q Consensus 202 ~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~----~~~~ 276 (369)
++..+++++-|+.|++||+|.+ ...+.+.+| .++|+.+..+|+| .+.+-+.|.++++||+|-. .++.
T Consensus 185 ----~s~qv~sggIdn~ikvWd~r~~---d~~~~lsGh-~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~ 256 (338)
T KOG0265|consen 185 ----TSDQVISGGIDNDIKVWDLRKN---DGLYTLSGH-ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVK 256 (338)
T ss_pred ----cccceeeccccCceeeeccccC---cceEEeecc-cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEE
Confidence 4678999999999999999988 788999988 8999999999999 9999999999999999863 3466
Q ss_pred eccccc-cC--ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEE
Q 017601 277 RWVHCS-KY--EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIF 350 (369)
Q Consensus 277 ~~~~h~-~~--~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~ 350 (369)
.+.+|. .. ....++||| +++.+.+++.|+.+++||....+.++.+.||. ..+.. -|...+|.+++.|.+|+
T Consensus 257 if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 257 IFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred EeecchhhhhhhcceeeccC-CCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEeccCceeE
Confidence 666651 22 356789999 99999999999999999999989999999998 44433 45889999999999998
Q ss_pred E
Q 017601 351 V 351 (369)
Q Consensus 351 i 351 (369)
+
T Consensus 334 l 334 (338)
T KOG0265|consen 334 L 334 (338)
T ss_pred e
Confidence 7
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-25 Score=185.67 Aligned_cols=208 Identities=14% Similarity=0.163 Sum_probs=162.9
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|++.|+.++|+|.. +.++|+++.+..|++|+.... . .+...........-.+.++||+|.+ .++|++
T Consensus 10 ~~gh~~r~W~~awhp~~---g~ilAscg~Dk~vriw~~~~~-~-----s~~ck~vld~~hkrsVRsvAwsp~g-~~La~a 79 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGK---GVILASCGTDKAVRIWSTSSG-D-----SWTCKTVLDDGHKRSVRSVAWSPHG-RYLASA 79 (312)
T ss_pred ecCCCCcEEEEEeccCC---ceEEEeecCCceEEEEecCCC-C-----cEEEEEeccccchheeeeeeecCCC-cEEEEe
Confidence 57899999999999962 469999999999999998842 1 1222111111112235689999954 588888
Q ss_pred ecccceEEEEeCC----cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 168 RSFSKSIDVYDQD----IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 168 ~s~d~~i~lwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
|+|.++.||... ..+..+ ..|...+..+.+ +++|++|++++.|..|-||.+...+.-.++..++.| ...
T Consensus 80 -SFD~t~~Iw~k~~~efecv~~l--EGHEnEVK~Vaw---s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqD 152 (312)
T KOG0645|consen 80 -SFDATVVIWKKEDGEFECVATL--EGHENEVKCVAW---SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQD 152 (312)
T ss_pred -eccceEEEeecCCCceeEEeee--eccccceeEEEE---cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-ccc
Confidence 999999999654 233332 224455555553 346788889999999999999866556778888877 788
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCC---CceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPR---RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~---~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
|--+.|+|.. +|+++|.|++|++|+-. .+++..++.+| ...|.+++|+| .|..|++++.|++++||-..
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~-~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH-ENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCc-cceEEEEEecC-CCceEEEecCCcceEeeeec
Confidence 9999999998 99999999999999755 47899999999 88999999999 99999999999999999843
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=198.07 Aligned_cols=253 Identities=15% Similarity=0.156 Sum_probs=188.5
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccccc-----ccC--CCCCCCCCCeeEEEECCC
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYS-----VLP--QDCGVGEGSWSGLCFSPS 159 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~l~~~p~ 159 (369)
...+|.+.|+.++-++-+ +..+.|+.+..|+|.||++.....-+....+. ..| ...++..+|+ +|+|||.
T Consensus 146 ~~i~h~g~~NRvr~~~~~--~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy-~LdWSp~ 222 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLG--NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGY-GLDWSPI 222 (440)
T ss_pred cccccccccceeeecccC--CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccce-eeecccc
Confidence 367999999999988863 35788999999999999997653221111111 011 0123334567 7999997
Q ss_pred CceeEEEEecccceEEEEeCCcceE---EEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee
Q 017601 160 QWSMAAVARSFSKSIDVYDQDIHLR---TLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
..+.++++ -.-+.|++|....... ......|..++.-++++|. ..+.|++||-|++|+|||+|.+.+..++.+-
T Consensus 223 ~~g~LlsG-Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSpt--E~~vfaScS~DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 223 KTGRLLSG-DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPT--EDGVFASCSCDGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred cccccccC-ccccceEeeeeccCceeecCccccccccchhhhccCCc--cCceEEeeecCceEEEEEecCCCccceeEee
Confidence 77778877 6678899997643211 1122236667777887763 4578888999999999999998665666664
Q ss_pred eccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC---ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 237 CGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR---WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~---~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
.+ ...|+.|+|+-.- +||+|+.||+++|||+|+ ++++.+|+-| +.+|++|.|+|++...|+++|.|..|.+||
T Consensus 300 Ah--~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-k~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 300 AH--NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH-KAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred cc--CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec-cCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 44 4899999999888 999999999999999997 6788999999 999999999999899999999999999999
Q ss_pred CcC-------------------CceeEEEEcCCCeeeeeEcC-CCCEEEEEeCCCc
Q 017601 313 WRE-------------------SSKVFAFRGDSNWLGFSKCS-NRDVLGGWSDSGS 348 (369)
Q Consensus 313 ~~~-------------------~~~~~~~~g~~~~~~~~~~~-d~~~l~sgs~dg~ 348 (369)
+.- ..++|.+.|..-...+..++ ...+|++.+.||.
T Consensus 377 lsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 377 LSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred eeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 853 13667776654323333344 4678889888884
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=216.01 Aligned_cols=240 Identities=18% Similarity=0.159 Sum_probs=183.0
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
...|..|+|+|. .-.+.+.=-.|.|.+||+..+ .....+..|+ |.+.|++|+|+++ +++++ +.|
T Consensus 9 SsRvKglsFHP~----rPwILtslHsG~IQlWDYRM~-----tli~rFdeHd-----GpVRgv~FH~~qp-lFVSG-GDD 72 (1202)
T KOG0292|consen 9 SSRVKGLSFHPK----RPWILTSLHSGVIQLWDYRMG-----TLIDRFDEHD-----GPVRGVDFHPTQP-LFVSG-GDD 72 (1202)
T ss_pred cccccceecCCC----CCEEEEeecCceeeeehhhhh-----hHHhhhhccC-----CccceeeecCCCC-eEEec-CCc
Confidence 367889999997 345555566799999999854 1122234444 4456999999665 67777 999
Q ss_pred ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECC
Q 017601 172 KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSS 251 (369)
Q Consensus 172 ~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp 251 (369)
..|++|+.....-.+....|-.-+..+.+ -+.-..++++|+|.||+||+..++ +++..+.+| ...|.|..|+|
T Consensus 73 ykIkVWnYk~rrclftL~GHlDYVRt~~F---HheyPWIlSASDDQTIrIWNwqsr---~~iavltGH-nHYVMcAqFhp 145 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRCLFTLLGHLDYVRTVFF---HHEYPWILSASDDQTIRIWNWQSR---KCIAVLTGH-NHYVMCAQFHP 145 (1202)
T ss_pred cEEEEEecccceehhhhccccceeEEeec---cCCCceEEEccCCCeEEEEeccCC---ceEEEEecC-ceEEEeeccCC
Confidence 99999988654433333434333333322 234569999999999999999999 999999988 78999999999
Q ss_pred CC-cEEEEeCCCcEEEEeCCC--------c---------------------eeeeeccccccCceEEEEEcCCCCCEEEE
Q 017601 252 TG-NIAVAGADRTVTIYDPRR--------W---------------------SALSRWVHCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 252 ~g-~lasgs~D~~v~vwD~~~--------~---------------------~~~~~~~~h~~~~v~~l~~sp~d~~~l~s 301 (369)
.. ++++||-|.||+|||+.- + -..+.+.|| ...|+-++|+| .-.+++|
T Consensus 146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH-DRGVNwaAfhp-TlpliVS 223 (1202)
T KOG0292|consen 146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH-DRGVNWAAFHP-TLPLIVS 223 (1202)
T ss_pred ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc-ccccceEEecC-CcceEEe
Confidence 88 999999999999999751 1 012346789 89999999999 8889999
Q ss_pred EECCCeEEEEECcCCc--eeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 302 QGVDYEVFCGQWRESS--KVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 302 ~s~D~~i~vwd~~~~~--~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|+.|+.|++|-+...+ .+.+.+||. .++.. -+..++|+|.|+|++|+|||+....
T Consensus 224 G~DDRqVKlWrmnetKaWEvDtcrgH~--nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKAWEVDTCRGHY--NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred cCCcceeeEEEeccccceeehhhhccc--CCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 9999999999997643 355668887 34433 3467899999999999999997554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=206.87 Aligned_cols=238 Identities=17% Similarity=0.189 Sum_probs=182.1
Q ss_pred ceeeEEEEeecCCCCceEEE-EEecCCcEEEEEecCCCCCCccccccc--cCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 93 SEVQSIALAETDSSGYMVLG-SVDSYGHLIVSKLDTSGKDVDRLTYSV--LPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~la-s~d~~g~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
..|..++|+..+ .-|| .+.+.|.+.||+.+.. .|.+ ++|.. .+++++++| +++++|++ +
T Consensus 308 ~~I~t~~~N~tG----DWiA~g~~klgQLlVweWqsE-------sYVlKQQgH~~-----~i~~l~YSp-Dgq~iaTG-~ 369 (893)
T KOG0291|consen 308 QKILTVSFNSTG----DWIAFGCSKLGQLLVWEWQSE-------SYVLKQQGHSD-----RITSLAYSP-DGQLIATG-A 369 (893)
T ss_pred ceeeEEEecccC----CEEEEcCCccceEEEEEeecc-------ceeeecccccc-----ceeeEEECC-CCcEEEec-c
Confidence 567788887653 3444 3456789999998854 2332 22322 245899999 55688888 9
Q ss_pred ccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 170 FSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 170 ~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
.|+.|+|||... +.-++ ..|...++-+++. ..+..+++.+-||+|+.||+... ...+++..+..-...|+
T Consensus 370 eDgKVKvWn~~SgfC~vTF--teHts~Vt~v~f~---~~g~~llssSLDGtVRAwDlkRY---rNfRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTF--TEHTSGVTAVQFT---ARGNVLLSSSLDGTVRAWDLKRY---RNFRTFTSPEPIQFSCV 441 (893)
T ss_pred CCCcEEEEeccCceEEEEe--ccCCCceEEEEEE---ecCCEEEEeecCCeEEeeeeccc---ceeeeecCCCceeeeEE
Confidence 999999999865 44333 2344444444432 24678999999999999999987 78888887634567888
Q ss_pred EECCCC-cEEEEeCCC-cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC-ceeEEEEc
Q 017601 248 CSSSTG-NIAVAGADR-TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES-SKVFAFRG 324 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~-~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~-~~~~~~~g 324 (369)
+..|.| .+..|+.|. -|.||++++|+.+..+.|| +++|.+++|+| +++.|+|+|.|++||+||+-.. ....++..
T Consensus 442 avD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH-EgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i 519 (893)
T KOG0291|consen 442 AVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH-EGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEI 519 (893)
T ss_pred EEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC-CCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEee
Confidence 899999 667777666 5899999999999999999 99999999999 9999999999999999999653 34444544
Q ss_pred CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 325 DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 325 ~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+...++...|||+.||.++-||.|.+||.+.+.
T Consensus 520 ~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 520 RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred ccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 3333677778899999999999999999998764
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=194.04 Aligned_cols=260 Identities=13% Similarity=0.089 Sum_probs=199.1
Q ss_pred cccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCc
Q 017601 82 DSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQW 161 (369)
Q Consensus 82 ~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 161 (369)
+-+.+.+..|+++|.+++++|+ ..++++++.+-.-++|+..++. ..+.+..|.. .++++.|+. ++
T Consensus 54 DdS~~tF~~H~~svFavsl~P~----~~l~aTGGgDD~AflW~~~~ge-----~~~eltgHKD-----SVt~~~Fsh-dg 118 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPN----NNLVATGGGDDLAFLWDISTGE-----FAGELTGHKD-----SVTCCSFSH-DG 118 (399)
T ss_pred ccceeehhhcCCceEEEEeCCC----CceEEecCCCceEEEEEccCCc-----ceeEecCCCC-----ceEEEEEcc-Cc
Confidence 3455667899999999999996 5799999999999999998762 2344555543 366899998 66
Q ss_pred eeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC
Q 017601 162 SMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~ 241 (369)
.++|++ ..++.|+||+...........+....+.++.|+|. ...|++++.||.+-+|.+..+ ...+.+.+| +
T Consensus 119 tlLATG-dmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~---a~illAG~~DGsvWmw~ip~~---~~~kv~~Gh-~ 190 (399)
T KOG0296|consen 119 TLLATG-DMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR---AHILLAGSTDGSVWMWQIPSQ---ALCKVMSGH-N 190 (399)
T ss_pred eEEEec-CCCccEEEEEcccCceEEEeecccCceEEEEeccc---ccEEEeecCCCcEEEEECCCc---ceeeEecCC-C
Confidence 788988 99999999997643333333445678889998884 458889999999999999876 677888887 8
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccc--------------------------------------
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCS-------------------------------------- 282 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~-------------------------------------- 282 (369)
.++++=.|.|+| ++++|..||+|++||+.+++++.++.+..
T Consensus 191 ~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 191 SPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred CCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence 999999999999 99999999999999999988877654110
Q ss_pred ------------cCceEEEEEcCC--CCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcC--CCCEEEEEeCC
Q 017601 283 ------------KYEITGLSFSSI--DSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCS--NRDVLGGWSDS 346 (369)
Q Consensus 283 ------------~~~v~~l~~sp~--d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~--d~~~l~sgs~d 346 (369)
...+.+|.|.|. .=.+.|.|+.||+|.|||+....+.+.+.... ++.++. ...+|++++.+
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~t~~l~t~c~~ 347 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLNTDYLLTACAN 347 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcCcchheeeccC
Confidence 111223333331 33467889999999999999877777665333 444433 25889999999
Q ss_pred CcEEEEECCCCcchhhhcccCC
Q 017601 347 GSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 347 g~I~iWd~~~~~~~~~~l~g~~ 368 (369)
|.|+.||.++|+. ...+.||.
T Consensus 348 g~v~~wDaRtG~l-~~~y~GH~ 368 (399)
T KOG0296|consen 348 GKVRQWDARTGQL-KFTYTGHQ 368 (399)
T ss_pred ceEEeeeccccce-EEEEecCc
Confidence 9999999999974 56677774
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=191.28 Aligned_cols=242 Identities=12% Similarity=0.165 Sum_probs=189.2
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
+..+|++.|++..+..+ ..+-|++..+=+-.+||.-++.. + +++. |.. -+..++|+. +...+++
T Consensus 54 tfeghkgavw~~~l~~n----a~~aasaaadftakvw~a~tgde-l--hsf~---hkh-----ivk~~af~~-ds~~llt 117 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKN----ATRAASAAADFTAKVWDAVTGDE-L--HSFE---HKH-----IVKAVAFSQ-DSNYLLT 117 (334)
T ss_pred eeeccCcceeeeecCch----hhhhhhhcccchhhhhhhhhhhh-h--hhhh---hhh-----eeeeEEecc-cchhhhc
Confidence 35699999999999775 35566666666677788766522 1 1222 111 144799998 5567777
Q ss_pred EecccceEEEEeCCcceEEEEe-eeCCcc---eeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRT-LWYPSS---LNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~-~~~~~~---v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
+ +.++.++|||..+....... ..++.. +.|+. .+..+|+.++|++||+||.+++ ..++++... .
T Consensus 118 g-g~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~------eD~~iLSSadd~tVRLWD~rTg---t~v~sL~~~--s 185 (334)
T KOG0278|consen 118 G-GQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH------EDKCILSSADDKTVRLWDHRTG---TEVQSLEFN--S 185 (334)
T ss_pred c-chHHHhhhhhccCCCCCchhhcCCCCcceeEEEec------cCceEEeeccCCceEEEEeccC---cEEEEEecC--C
Confidence 7 89999999998654333222 224433 44444 3678999999999999999999 889998877 8
Q ss_pred cEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 243 ILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 243 ~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
+|+++.++++|.+++-..-++|+.||..+..++..++-. ..|.+.+++| +...++.|+.|..++.||..+++.+-.|
T Consensus 186 ~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P--~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP--CNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred CCcceeeccCCCEEEEecCceeEEeccccccceeeccCc--cccccccccC-CCceEEecCcceEEEEEeccCCceeeec
Confidence 999999999997777778889999999999888887743 6799999999 8899999999999999999999988887
Q ss_pred -EcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 323 -RGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 323 -~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+||. ...++..+|||..-++||+||+|++|.+..++.
T Consensus 263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 7765 345666689999999999999999999876653
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=208.15 Aligned_cols=201 Identities=14% Similarity=0.089 Sum_probs=150.5
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcce------EEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEE
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL------RTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTI 221 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~------~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~i 221 (369)
+.+.+++|+|.++.+++++ +.|++|++||+.... ..+..+ .|...+..+.+.|. .++.|++++.|++|+|
T Consensus 76 ~~V~~v~fsP~d~~~LaSg-S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~--~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTA-SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS--AMNVLASAGADMVVNV 152 (493)
T ss_pred CCEEEEEEcCCCCCEEEEE-eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC--CCCEEEEEeCCCEEEE
Confidence 4577999999666788888 999999999975321 112222 24455666665442 1257888999999999
Q ss_pred EeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCc-eEEEEEcCCCCCEE
Q 017601 222 WDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYE-ITGLSFSSIDSNYI 299 (369)
Q Consensus 222 wD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~-v~~l~~sp~d~~~l 299 (369)
||++++ +.+..+..+ ...|++++|+|+| +|++|+.|++|++||+++++.+.++.+| ... +..+.|.+ ++..+
T Consensus 153 WDl~tg---~~~~~l~~h-~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H-~~~~~~~~~w~~-~~~~i 226 (493)
T PTZ00421 153 WDVERG---KAVEVIKCH-SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH-ASAKSQRCLWAK-RKDLI 226 (493)
T ss_pred EECCCC---eEEEEEcCC-CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC-CCCcceEEEEcC-CCCeE
Confidence 999988 677777765 5889999999999 9999999999999999999999999999 554 55788999 77777
Q ss_pred EEEE----CCCeEEEEECcCCc-eeEEEEcCC-Ceee-eeEcCCCCEEEEEe-CCCcEEEEECCCCc
Q 017601 300 YVQG----VDYEVFCGQWRESS-KVFAFRGDS-NWLG-FSKCSNRDVLGGWS-DSGSIFVADVVAKE 358 (369)
Q Consensus 300 ~s~s----~D~~i~vwd~~~~~-~~~~~~g~~-~~~~-~~~~~d~~~l~sgs-~dg~I~iWd~~~~~ 358 (369)
++++ .|++|++||+++.. .+..+..+. .... ....+++.+|++++ .|+.|++||+.+++
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 7654 47999999998743 444443332 1111 12245888888877 59999999998775
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=196.79 Aligned_cols=258 Identities=16% Similarity=0.120 Sum_probs=194.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+..|...++-..|||.+ ..+||+|..|+|++||.... ..+ .+..+++-. +.+..++|++++..++|++
T Consensus 55 YtEH~~~vtVAkySPsG----~yiASGD~sG~vRIWdtt~~-~hi--LKnef~v~a-----G~I~Di~Wd~ds~RI~avG 122 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSG----FYIASGDVSGKVRIWDTTQK-EHI--LKNEFQVLA-----GPIKDISWDFDSKRIAAVG 122 (603)
T ss_pred eccccceeEEEEeCCCc----eEEeecCCcCcEEEEeccCc-cee--eeeeeeecc-----cccccceeCCCCcEEEEEe
Confidence 56899999999999973 69999999999999998854 111 122232222 3355799999777667776
Q ss_pred eccc--ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFS--KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d--~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
-+.+ +.+-+||.+..+-.+.. |...++.+..-|--| =+++++++|++|.+|+-.-- +-..++..| ...|+
T Consensus 123 EGrerfg~~F~~DSG~SvGei~G--hSr~ins~~~KpsRP--fRi~T~sdDn~v~ffeGPPF---KFk~s~r~H-skFV~ 194 (603)
T KOG0318|consen 123 EGRERFGHVFLWDSGNSVGEITG--HSRRINSVDFKPSRP--FRIATGSDDNTVAFFEGPPF---KFKSSFREH-SKFVN 194 (603)
T ss_pred cCccceeEEEEecCCCccceeec--cceeEeeeeccCCCc--eEEEeccCCCeEEEeeCCCe---eeeeccccc-cccee
Confidence 3333 45777888765554432 333344443322212 37899999999999975422 333334444 57899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc---ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV---HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~---~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
|+.|+||| ++|+++.||+|.+||=.+++.+..+. +| ++.|.+|+|+| |++.++++|.|.+++|||+.+.+++.+
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aH-kGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAH-KGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVST 272 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCc-cccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEE
Confidence 99999999 99999999999999999999999988 89 99999999999 999999999999999999999999999
Q ss_pred EEcCCCee--eeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 322 FRGDSNWL--GFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 322 ~~g~~~~~--~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
+.-..... .+-..-.++.|++.|-+|+|.+++..... .+..+.||.
T Consensus 273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHn 320 (603)
T KOG0318|consen 273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHN 320 (603)
T ss_pred eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccc
Confidence 85433111 11112267899999999999999998887 677788875
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=195.18 Aligned_cols=259 Identities=15% Similarity=0.126 Sum_probs=193.8
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC--Cc
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS--QW 161 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~--~~ 161 (369)
..++-..|.+.|.+|...+ ..+.+++-+|.+++|+.... ..+.+.+|...+. .++|.-. ..
T Consensus 97 ~pl~~~~hdDWVSsv~~~~------~~IltgsYDg~~riWd~~Gk------~~~~~~Ght~~ik-----~v~~v~~n~~~ 159 (423)
T KOG0313|consen 97 KPLQCFLHDDWVSSVKGAS------KWILTGSYDGTSRIWDLKGK------SIKTIVGHTGPIK-----SVAWVIKNSSS 159 (423)
T ss_pred CccccccchhhhhhhcccC------ceEEEeecCCeeEEEecCCc------eEEEEecCCccee-----eeEEEecCCcc
Confidence 4444557999999998874 47888889999999998743 1233334443332 3444321 23
Q ss_pred eeEEEEecccceEEEEeCCcce---EEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc-----------
Q 017601 162 SMAAVARSFSKSIDVYDQDIHL---RTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM----------- 226 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~~~---~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~----------- 226 (369)
..++++ |.|.++++|..+... ...+ ...|...+..+.. .+++.++++++.|.+|+||+..+
T Consensus 160 ~~fvsa-s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv---~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~ 235 (423)
T KOG0313|consen 160 CLFVSA-SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSV---DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSN 235 (423)
T ss_pred ceEEEe-cCCceEEEEEecCchhhhhHHhHhcccccceeEEEe---cCCCCeEEeecccceeeecccCCCccccccccch
Confidence 467887 999999999754211 1111 1134445555442 35688999999999999999321
Q ss_pred -----------ccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCC
Q 017601 227 -----------KENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSID 295 (369)
Q Consensus 227 -----------~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d 295 (369)
.....++-.+.+| ..+|.++-|++.+.+.++|.|.+|+.||+.++....++.+. ...++++.+| .
T Consensus 236 ~rrk~~~~~~~~~~r~P~vtl~GH-t~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~-~ 311 (423)
T KOG0313|consen 236 RRRKKQKREKEGGTRTPLVTLEGH-TEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSP-L 311 (423)
T ss_pred hhhhhhhhhhcccccCceEEeccc-ccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC--cceeEeeccc-c
Confidence 0011345567777 89999999999669999999999999999999999988865 6899999999 9
Q ss_pred CCEEEEEECCCeEEEEECcCC---ceeEEEEcCCCeeeeeE-cC-CCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 296 SNYIYVQGVDYEVFCGQWRES---SKVFAFRGDSNWLGFSK-CS-NRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~~---~~~~~~~g~~~~~~~~~-~~-d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
..+|++||.|..+++||.+++ -..+.|.||.+|..-.. +| +..+|+|||.|+++++||+++.+..+..+.||
T Consensus 312 ~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 312 SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 999999999999999999984 35688899998865443 66 66779999999999999999998777777776
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=200.31 Aligned_cols=244 Identities=15% Similarity=0.168 Sum_probs=179.7
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
++.+|++.|++++-.|.. ...+||++.||.|.+||+.+.. ....+.+|. |-+.|+++.. ..+.+
T Consensus 61 ~L~gHrdGV~~lakhp~~---ls~~aSGs~DG~VkiWnlsqR~-----~~~~f~AH~-----G~V~Gi~v~~---~~~~t 124 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNK---LSTVASGSCDGEVKIWNLSQRE-----CIRTFKAHE-----GLVRGICVTQ---TSFFT 124 (433)
T ss_pred hccccccccchhhcCcch---hhhhhccccCceEEEEehhhhh-----hhheeeccc-----CceeeEEecc---cceEE
Confidence 357999999999999862 4788999999999999998642 123344443 3355788866 34555
Q ss_pred EecccceEEEEeCC-cceEEEE-------------------------------------eeeCCcceeeeccCCCCCCCC
Q 017601 167 ARSFSKSIDVYDQD-IHLRTLR-------------------------------------TLWYPSSLNFVQNLSPVNGGP 208 (369)
Q Consensus 167 ~~s~d~~i~lwd~~-~~~~~~~-------------------------------------~~~~~~~v~~~~~~~~~~~~~ 208 (369)
+ +.|++|+.|..+ ...+++. ..+....+..+ .++|-..
T Consensus 125 v-gdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~sv---kfNpvET 200 (433)
T KOG0268|consen 125 V-GDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSV---KFNPVET 200 (433)
T ss_pred e-cCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEE---ecCCCcc
Confidence 5 688888888631 1111110 00011112222 2344344
Q ss_pred cEE-EEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCc
Q 017601 209 NML-AVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYE 285 (369)
Q Consensus 209 ~ll-a~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~ 285 (369)
.+| ++++|+.|.|||+|++ .+++.+... ..-+.|||+|++ .+.+|++|..+..||+|. ..++....+| .+.
T Consensus 201 sILas~~sDrsIvLyD~R~~---~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsA 274 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQA---SPLKKVILT--MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSA 274 (433)
T ss_pred hheeeeccCCceEEEecccC---Cccceeeee--ccccceecCccccceeeccccccceehhhhhhcccchhhccc-cee
Confidence 444 4669999999999999 788776654 777899999988 999999999999999998 6778899999 999
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE--cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR--GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~--g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
|.+|+||| .|+-++|||.|.+||||..+.+.....+. -..+..++..+.|.++|+|||+|+.|++|.....
T Consensus 275 V~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 275 VMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred EEEeccCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 99999999 99999999999999999998765444441 1111145555779999999999999999987654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-25 Score=211.67 Aligned_cols=238 Identities=18% Similarity=0.182 Sum_probs=190.4
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|.+.|++++|..- ...+.+++.|.++++||..++ .....+..|... +.++.. .+..+++
T Consensus 244 ~l~GH~g~V~~l~~~~~----~~~lvsgS~D~t~rvWd~~sg-----~C~~~l~gh~st-----v~~~~~---~~~~~~s 306 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPSG----GDKLVSGSTDKTERVWDCSTG-----ECTHSLQGHTSS-----VRCLTI---DPFLLVS 306 (537)
T ss_pred eccCCCCCceeEEEecC----CCEEEEEecCCcEEeEecCCC-----cEEEEecCCCce-----EEEEEc---cCceEee
Confidence 37899999999999752 258888889999999998765 223333333321 223333 3345666
Q ss_pred EecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 167 ARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+ |.|.+|++|++.. .++.+.. |...|..+.. ++..+++++.|++|++||.+++ ++++.+.+| ...|
T Consensus 307 g-s~D~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~-----~~~~lvsgs~d~~v~VW~~~~~---~cl~sl~gH-~~~V 374 (537)
T KOG0274|consen 307 G-SRDNTVKVWDVTNGACLNLLRG--HTGPVNCVQL-----DEPLLVSGSYDGTVKVWDPRTG---KCLKSLSGH-TGRV 374 (537)
T ss_pred c-cCCceEEEEeccCcceEEEecc--ccccEEEEEe-----cCCEEEEEecCceEEEEEhhhc---eeeeeecCC-cceE
Confidence 5 9999999999863 3333332 5666666663 3579999999999999999988 999999987 8999
Q ss_pred EEEEECCCCcEEEEeCCCcEEEEeCCCc-eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 245 YAVCSSSTGNIAVAGADRTVTIYDPRRW-SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 245 ~~v~~sp~g~lasgs~D~~v~vwD~~~~-~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
+++.+.+...+++|+.|++|++||+++. +++.++.+| ..-|..+.+.. ++|++++.|++|++||..++++++.+.
T Consensus 375 ~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h-~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 375 YSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGH-TSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred EEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCC-ccccccccccc---ceeEeccccccEEEeecccCceeeeec
Confidence 9998877679999999999999999999 999999999 88888777754 899999999999999999999999998
Q ss_pred c-CCCeeeeeEcCC-CCEEEEEeCCCcEEEEECCCCcc
Q 017601 324 G-DSNWLGFSKCSN-RDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 324 g-~~~~~~~~~~~d-~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+ |. .++....- ...+++++.||++++||++++..
T Consensus 451 ~~~~--~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 451 GRHV--GGVSALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred cCCc--ccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence 8 54 44555443 48899999999999999999864
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=191.08 Aligned_cols=275 Identities=14% Similarity=0.114 Sum_probs=205.5
Q ss_pred EEEEEEeCCchhhhcCC-CccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC
Q 017601 53 LYKLQVMMDDWFVSEGK-DSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD 131 (369)
Q Consensus 53 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~ 131 (369)
|-.++|++..+++..|. +....-++..+.. .++.+.+|...|..+++|+. .-.+.++..++.|..||+....
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg~-LkltltGhi~~vr~vavS~r----HpYlFs~gedk~VKCwDLe~nk-- 226 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLATGQ-LKLTLTGHIETVRGVAVSKR----HPYLFSAGEDKQVKCWDLEYNK-- 226 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEcccCe-EEEeecchhheeeeeeeccc----CceEEEecCCCeeEEEechhhh--
Confidence 34567777777776655 4443333445553 66778899999999999987 4688888899999999998541
Q ss_pred CccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEE
Q 017601 132 VDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNML 211 (369)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ll 211 (369)
+ .....+|.. ++.+++.+|.. ..++++ +.|.++++||+...........|...++.+.+-+. +.+++
T Consensus 227 v---IR~YhGHlS-----~V~~L~lhPTl-dvl~t~-grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~---dpqvi 293 (460)
T KOG0285|consen 227 V---IRHYHGHLS-----GVYCLDLHPTL-DVLVTG-GRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT---DPQVI 293 (460)
T ss_pred h---HHHhccccc-----eeEEEeccccc-eeEEec-CCcceEEEeeecccceEEEecCCCCcceeEEeecC---CCceE
Confidence 1 112222322 46689999954 467777 89999999998754443333345556666655444 45999
Q ss_pred EEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEE
Q 017601 212 AVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLS 290 (369)
Q Consensus 212 a~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~ 290 (369)
++|.|++|++||++.+ +...++.+| ...|.+++.+|.. .+|+++.|. |+-|++..++.++.+.+| ...|++++
T Consensus 294 t~S~D~tvrlWDl~ag---kt~~tlt~h-kksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh-~~iintl~ 367 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAG---KTMITLTHH-KKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGH-NAIINTLS 367 (460)
T ss_pred EecCCceEEEeeeccC---ceeEeeecc-cceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccc-cceeeeee
Confidence 9999999999999998 777777776 6899999999999 999999886 889999999999999999 99999999
Q ss_pred EcCCCCCEEEEEECCCeEEEEECcCCceeEEEE---cCCCe---eeeeE-cC--CCCEEEEEeCCCcEEEEECC
Q 017601 291 FSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR---GDSNW---LGFSK-CS--NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 291 ~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~---g~~~~---~~~~~-~~--d~~~l~sgs~dg~I~iWd~~ 355 (369)
.+. | .++++|+..+.+.+||++++-..+.+. +.... .++.. |. .|..|++|..|.+|++|.-.
T Consensus 368 ~ns-D-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 368 VNS-D-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ecc-C-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 987 5 477899999999999999875444331 11100 12333 22 68899999999999999643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=208.26 Aligned_cols=223 Identities=13% Similarity=0.061 Sum_probs=161.3
Q ss_pred EecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcc---eE----EE
Q 017601 114 VDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH---LR----TL 186 (369)
Q Consensus 114 ~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~---~~----~~ 186 (369)
++..|.+.+|+.... .....+..|. ..+.+++|+|.++.++|++ +.|++|+|||+... .. .+
T Consensus 50 GG~~gvI~L~~~~r~-----~~v~~L~gH~-----~~V~~lafsP~~~~lLASg-S~DgtIrIWDi~t~~~~~~~i~~p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-----PPVIKLKGHT-----SSILDLQFNPCFSEILASG-SEDLTIRVWEIPHNDESVKEIKDPQ 118 (568)
T ss_pred CCceeEEEeeecCCC-----ceEEEEcCCC-----CCEEEEEEcCCCCCEEEEE-eCCCeEEEEECCCCCccccccccce
Confidence 445667888887643 1122333333 3466899999767788888 89999999997531 11 11
Q ss_pred E-eeeCCcceeeeccCCCCCCCCcE-EEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCc
Q 017601 187 R-TLWYPSSLNFVQNLSPVNGGPNM-LAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRT 263 (369)
Q Consensus 187 ~-~~~~~~~v~~~~~~~~~~~~~~l-la~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~ 263 (369)
. ...|...+..+.++| ++..+ ++++.|++|+|||++++ +.+..+.++ ..|++++|+|+| +|++++.|++
T Consensus 119 ~~L~gH~~~V~sVaf~P---~g~~iLaSgS~DgtIrIWDl~tg---~~~~~i~~~--~~V~SlswspdG~lLat~s~D~~ 190 (568)
T PTZ00420 119 CILKGHKKKISIIDWNP---MNYYIMCSSGFDSFVNIWDIENE---KRAFQINMP--KKLSSLKWNIKGNLLSGTCVGKH 190 (568)
T ss_pred EEeecCCCcEEEEEECC---CCCeEEEEEeCCCeEEEEECCCC---cEEEEEecC--CcEEEEEECCCCCEEEEEecCCE
Confidence 1 122445566666544 34454 57889999999999988 666666655 789999999999 9999999999
Q ss_pred EEEEeCCCceeeeeccccccCceEE-----EEEcCCCCCEEEEEECCC----eEEEEECcC-CceeEEEEcCCCeee---
Q 017601 264 VTIYDPRRWSALSRWVHCSKYEITG-----LSFSSIDSNYIYVQGVDY----EVFCGQWRE-SSKVFAFRGDSNWLG--- 330 (369)
Q Consensus 264 v~vwD~~~~~~~~~~~~h~~~~v~~-----l~~sp~d~~~l~s~s~D~----~i~vwd~~~-~~~~~~~~g~~~~~~--- 330 (369)
|+|||+++++.+.++.+| .+.+.. ..|++ ++.+|+++|.|+ +|+|||++. ++++..+..+.....
T Consensus 191 IrIwD~Rsg~~i~tl~gH-~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p 268 (568)
T PTZ00420 191 MHIIDPRKQEIASSFHIH-DGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP 268 (568)
T ss_pred EEEEECCCCcEEEEEecc-cCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE
Confidence 999999999999999999 765433 34568 889999988774 799999995 566666544331111
Q ss_pred eeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 331 FSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 331 ~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+...+++.++++|+.|++|++|++..+
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 222336889999999999999999765
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=197.96 Aligned_cols=287 Identities=16% Similarity=0.130 Sum_probs=205.4
Q ss_pred EEEEeCCeEEEEEEeCCchhhhc-CCCcc-ccccCcccccccc-cccCCccceeeEEEEeecCCCCceEEEEEecCCcEE
Q 017601 45 VYIASGCHLYKLQVMMDDWFVSE-GKDSL-LIPEQTPVMDSSM-LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLI 121 (369)
Q Consensus 45 ~~~as~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~-~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~ 121 (369)
++.+.-+.|+-+.++..+.+++. .++.. .++.-....+.+. .++.+|...|--|.||||. ..|.++..+-.++
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd----ryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD----RYLLACGFDEVLS 294 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC----CeEEecCchHhee
Confidence 34455566666777777777744 44543 3333223333332 3367999999999999984 4555555555699
Q ss_pred EEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcce-EEEEeeeCCcceeeecc
Q 017601 122 VSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL-RTLRTLWYPSSLNFVQN 200 (369)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~-~~~~~~~~~~~v~~~~~ 200 (369)
+||++++.. .+.|. +.. +-...+++|.|+ ...+++| +.|++|..||.+..+ ...+.... ..+..+.
T Consensus 295 lwDv~tgd~---~~~y~---~~~---~~S~~sc~W~pD-g~~~V~G-s~dr~i~~wdlDgn~~~~W~gvr~-~~v~dla- 361 (519)
T KOG0293|consen 295 LWDVDTGDL---RHLYP---SGL---GFSVSSCAWCPD-GFRFVTG-SPDRTIIMWDLDGNILGNWEGVRD-PKVHDLA- 361 (519)
T ss_pred eccCCcchh---hhhcc---cCc---CCCcceeEEccC-CceeEec-CCCCcEEEecCCcchhhccccccc-ceeEEEE-
Confidence 999997732 22222 111 122458999995 4567777 899999999986432 22221111 1222222
Q ss_pred CCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc
Q 017601 201 LSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV 279 (369)
Q Consensus 201 ~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~ 279 (369)
..+||..++++..|..+++|+..+. .....+..+ .+|++++.|.+| ++.+--.+..+.+||++....+..+.
T Consensus 362 --it~Dgk~vl~v~~d~~i~l~~~e~~---~dr~lise~--~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 362 --ITYDGKYVLLVTVDKKIRLYNREAR---VDRGLISEE--QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred --EcCCCcEEEEEecccceeeechhhh---hhhcccccc--CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 3357889999999999999999876 444445555 899999999999 77778889999999999988999999
Q ss_pred ccccCc--eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE-cC-CCCEEEEEeCCCcEEEEECC
Q 017601 280 HCSKYE--ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK-CS-NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 280 ~h~~~~--v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~-~~-d~~~l~sgs~dg~I~iWd~~ 355 (369)
|| +.. +..-+|--.+..+++|||.|+.|+||+..+++++..+.||+.-.+... .| +..++||+|+||+|+||...
T Consensus 435 Gh-kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 435 GH-KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred cc-cccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99 543 445567665779999999999999999999999999999993332222 44 88999999999999999875
Q ss_pred C
Q 017601 356 A 356 (369)
Q Consensus 356 ~ 356 (369)
.
T Consensus 514 ~ 514 (519)
T KOG0293|consen 514 D 514 (519)
T ss_pred c
Confidence 4
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=181.51 Aligned_cols=247 Identities=15% Similarity=0.061 Sum_probs=192.9
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
+..+|...|.+++|.-++ ..||+++.++.+.+|++..... .......+|.. .+--++|+|..+..+++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g----~~lasgs~dktv~v~n~e~~r~---~~~~~~~gh~~-----svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDG----TKLASGSFDKTVSVWNLERDRF---RKELVYRGHTD-----SVDQLCWDPKHPDLFAT 82 (313)
T ss_pred HhhhhhhcceEEEEcccC----ceeeecccCCceEEEEecchhh---hhhhcccCCCc-----chhhheeCCCCCcceEE
Confidence 357899999999999874 7999999999999999985511 00111112221 23358999999999999
Q ss_pred EecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 167 ARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 167 ~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+ +.|++|++||.. ++...+... ...+ ++.+ +|+|++++++..|..|.+.|.|+. +.+...+.. ..+
T Consensus 83 a-s~dk~ir~wd~r~~k~~~~i~~~--~eni-~i~w---sp~g~~~~~~~kdD~it~id~r~~---~~~~~~~~~--~e~ 150 (313)
T KOG1407|consen 83 A-SGDKTIRIWDIRSGKCTARIETK--GENI-NITW---SPDGEYIAVGNKDDRITFIDARTY---KIVNEEQFK--FEV 150 (313)
T ss_pred e-cCCceEEEEEeccCcEEEEeecc--Ccce-EEEE---cCCCCEEEEecCcccEEEEEeccc---ceeehhccc--cee
Confidence 9 999999999975 344333222 2222 2222 257889999999999999999987 666666555 778
Q ss_pred EEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 245 YAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 245 ~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
+-++|+-++ .++.-...|.|.|.....-+++.+++.| ...+.++.|+| +|+++|+||.|..+.+||+..--|.+.|.
T Consensus 151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH-~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 151 NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAH-PSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCIS 228 (313)
T ss_pred eeeeecCCCCEEEEecCCceEEEEeccccccccccccC-CcceEEEEECC-CCceEeeccccceeeccChhHhhhheeec
Confidence 889998777 6666666799999999999999999999 99999999999 99999999999999999999988888887
Q ss_pred cCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 324 GDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 324 g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
-+. ....+..+.||++||+||+|..|-|-++++|+.
T Consensus 229 RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 229 RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred cccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 665 112333355999999999999999999999864
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=191.81 Aligned_cols=245 Identities=16% Similarity=0.134 Sum_probs=190.5
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
...+..|.++.|-.| +.++|++|..|.|.++|..+. .....+..|..++. .+.|+|++..++++|
T Consensus 65 srFk~~v~s~~fR~D----G~LlaaGD~sG~V~vfD~k~r-----~iLR~~~ah~apv~-----~~~f~~~d~t~l~s~- 129 (487)
T KOG0310|consen 65 SRFKDVVYSVDFRSD----GRLLAAGDESGHVKVFDMKSR-----VILRQLYAHQAPVH-----VTKFSPQDNTMLVSG- 129 (487)
T ss_pred HhhccceeEEEeecC----CeEEEccCCcCcEEEeccccH-----HHHHHHhhccCcee-----EEEecccCCeEEEec-
Confidence 345688999999887 489999999999999995531 11223344443333 589999888888888
Q ss_pred cccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 169 SFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
+.|+.+++||.....-.+....|...+....++|.+ +..++++|.||+|++||+|+.. ..+..+.+. .+|..+.
T Consensus 130 sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~--~hivvtGsYDg~vrl~DtR~~~--~~v~elnhg--~pVe~vl 203 (487)
T KOG0310|consen 130 SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN--DHIVVTGSYDGKVRLWDTRSLT--SRVVELNHG--CPVESVL 203 (487)
T ss_pred CCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC--CeEEEecCCCceEEEEEeccCC--ceeEEecCC--CceeeEE
Confidence 999999999987554344444455666666655532 3478889999999999999863 566777765 9999999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCc-eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRW-SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~-~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
|-|.| ++|+++. ..|+|||+-+| +.+..+..| ...|||+++.. +++.|+|+|.|+.|++||+.+-+.++.+.-..
T Consensus 204 ~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H-~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~ 280 (487)
T KOG0310|consen 204 ALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNH-NKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG 280 (487)
T ss_pred EcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcc-cceEEEEEeec-CCceEeecccccceEEEEccceEEEEeeeccc
Confidence 99998 8888774 57999999964 555566668 89999999999 99999999999999999988888887775444
Q ss_pred CeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 327 NWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 327 ~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
....+..++|++.++.|-.||.+.+=+...+
T Consensus 281 pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 281 PVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 4467777789999999999999988755444
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=210.07 Aligned_cols=241 Identities=18% Similarity=0.200 Sum_probs=190.5
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
|...|.+..|.++ .+.+++.+..+.+|+..+... ..-.+.+| .+++.+++|.. .+..++++ +.
T Consensus 207 ~~~~~~~~q~~~~------~~~~~s~~~tl~~~~~~~~~~----i~~~l~GH-----~g~V~~l~~~~-~~~~lvsg-S~ 269 (537)
T KOG0274|consen 207 DDHVVLCLQLHDG------FFKSGSDDSTLHLWDLNNGYL----ILTRLVGH-----FGGVWGLAFPS-GGDKLVSG-ST 269 (537)
T ss_pred CcchhhhheeecC------eEEecCCCceeEEeecccceE----EEeeccCC-----CCCceeEEEec-CCCEEEEE-ec
Confidence 5778888888743 778888888999999886521 00112223 23455899976 66778888 99
Q ss_pred cceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 171 SKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 171 d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
|+++++||.. .+...+. .|...+..+.. ....+++++.|.+|++||+.++ .+++.+.+| ..+|+++.
T Consensus 270 D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~-----~~~~~~sgs~D~tVkVW~v~n~---~~l~l~~~h-~~~V~~v~ 338 (537)
T KOG0274|consen 270 DKTERVWDCSTGECTHSLQ--GHTSSVRCLTI-----DPFLLVSGSRDNTVKVWDVTNG---ACLNLLRGH-TGPVNCVQ 338 (537)
T ss_pred CCcEEeEecCCCcEEEEec--CCCceEEEEEc-----cCceEeeccCCceEEEEeccCc---ceEEEeccc-cccEEEEE
Confidence 9999999975 4555544 34555555542 2346666789999999999988 899988865 69999999
Q ss_pred ECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC-ceeEEEEcCCC
Q 017601 249 SSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES-SKVFAFRGDSN 327 (369)
Q Consensus 249 ~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~-~~~~~~~g~~~ 327 (369)
.+ .+.+++|+.|++|+|||++++++++++.+| ...|+++.+.+ . .++++|+.|++|++||+++. +|+.++.+|..
T Consensus 339 ~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~ 414 (537)
T KOG0274|consen 339 LD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS 414 (537)
T ss_pred ec-CCEEEEEecCceEEEEEhhhceeeeeecCC-cceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCcc
Confidence 88 349999999999999999999999999999 99999998876 4 89999999999999999999 99999999982
Q ss_pred eeeeeE-cCCCCEEEEEeCCCcEEEEECCCCcchhhhccc
Q 017601 328 WLGFSK-CSNRDVLGGWSDSGSIFVADVVAKENEISALKG 366 (369)
Q Consensus 328 ~~~~~~-~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g 366 (369)
-+.. ...+.+|++++.|++|++||.++++. +.++++
T Consensus 415 --~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~-~~~~~~ 451 (537)
T KOG0274|consen 415 --LVSSLLLRDNFLVSSSADGTIKLWDAEEGEC-LRTLEG 451 (537)
T ss_pred --cccccccccceeEeccccccEEEeecccCce-eeeecc
Confidence 2222 23789999999999999999998874 445544
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=194.58 Aligned_cols=256 Identities=15% Similarity=0.162 Sum_probs=191.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+..|++||+=+.||++ ++.||+++++.+..+|++..... +. ..+.+-+|.. ++.-+.|||+ +.++++|
T Consensus 220 l~~htdEVWfl~FS~n----GkyLAsaSkD~Taiiw~v~~d~~-~k-l~~tlvgh~~-----~V~yi~wSPD-dryLlaC 287 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHN----GKYLASASKDSTAIIWIVVYDVH-FK-LKKTLVGHSQ-----PVSYIMWSPD-DRYLLAC 287 (519)
T ss_pred HhhCCCcEEEEEEcCC----CeeEeeccCCceEEEEEEecCcc-ee-eeeeeecccC-----ceEEEEECCC-CCeEEec
Confidence 4689999999999998 48999999999999999875421 11 1222333322 3557999995 4566667
Q ss_pred ecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|..+.+||... ....+... +...+..+.|. ||+..+++++.|+++..||+... .+...++-....|.
T Consensus 288 -g~~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~---pDg~~~V~Gs~dr~i~~wdlDgn----~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 288 -GFDEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWC---PDGFRFVTGSPDRTIIMWDLDGN----ILGNWEGVRDPKVH 358 (519)
T ss_pred -CchHheeeccCCcchhhhhcccC-cCCCcceeEEc---cCCceeEecCCCCcEEEecCCcc----hhhcccccccceeE
Confidence 7888899999753 22222211 11222223322 57889999999999999999754 33334433235699
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+++.++|| .+++-..|..|++++..+.........+ .+|+++..|. |++++++.=.+.++++||++..+.++.|.|
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~G 435 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYFG 435 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhhc
Confidence 99999999 8888889999999998876655544444 7899999999 999999999999999999999999999999
Q ss_pred CCCeeeeeE-cC---CCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 325 DSNWLGFSK-CS---NRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 325 ~~~~~~~~~-~~---d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
|..-.-+.. |. +..+++|||+|+.|+||+..+++ .+..|.||.
T Consensus 436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk-ll~~LsGHs 482 (519)
T KOG0293|consen 436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK-LLAVLSGHS 482 (519)
T ss_pred ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc-eeEeecCCc
Confidence 983222222 44 67899999999999999999887 477788885
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=203.61 Aligned_cols=204 Identities=17% Similarity=0.162 Sum_probs=163.4
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM 226 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~ 226 (369)
|++++.|.|....+++++ +.|+.|+||++- .+++++..+. ..+..+. +++++..|+++|-|+.+++||+.+
T Consensus 216 gvsai~~fp~~~hLlLS~-gmD~~vklW~vy~~~~~lrtf~gH~--k~Vrd~~---~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSG-GMDGLVKLWNVYDDRRCLRTFKGHR--KPVRDAS---FNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred ccchhhhccceeeEEEec-CCCceEEEEEEecCcceehhhhcch--hhhhhhh---ccccCCeeeeeecceeeeeecccc
Confidence 566899999666677777 999999999874 4455443322 2222222 345788999999999999999999
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
| +++.++... ..++|+.|+|++ .+++|+.|+.|+.||+|+++.++++..| -+.|..+.|-+ ++++++|.+.
T Consensus 290 G---~~~~~f~~~--~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h-Lg~i~~i~F~~-~g~rFissSD 362 (503)
T KOG0282|consen 290 G---QVLSRFHLD--KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH-LGAILDITFVD-EGRRFISSSD 362 (503)
T ss_pred c---eEEEEEecC--CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh-hhheeeeEEcc-CCceEeeecc
Confidence 9 899998876 899999999999 8899999999999999999999999999 89999999999 9999999999
Q ss_pred CCeEEEEECcCC----------------------------------------------ceeEEEEcCCC---eeeeeEcC
Q 017601 305 DYEVFCGQWRES----------------------------------------------SKVFAFRGDSN---WLGFSKCS 335 (369)
Q Consensus 305 D~~i~vwd~~~~----------------------------------------------~~~~~~~g~~~---~~~~~~~~ 335 (369)
|++++||+++.+ .....|+||.- ...+..++
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 999999998762 11222345541 12333467
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 336 NRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 336 d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
||.+|++|+.||.+++||.++-+ .+..+++|
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~k-l~~~lkah 473 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTK-LVSKLKAH 473 (503)
T ss_pred CCCeEEeecCCccEEEeechhhh-hhhccccC
Confidence 99999999999999999998875 34555544
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=200.25 Aligned_cols=220 Identities=13% Similarity=0.113 Sum_probs=157.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC--CccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD--VDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+.+|.+.|++++|+|.. ..+|++++.+|+|++|++...... .......+..|. ..+.+++|+|.+..+++
T Consensus 71 l~GH~~~V~~v~fsP~d---~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFD---PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVLA 142 (493)
T ss_pred EeCCCCCEEEEEEcCCC---CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEEE
Confidence 57999999999999931 368999999999999999754210 001111223332 33668999997667888
Q ss_pred EEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
++ +.|++|+|||+...........+...+..+.+ ++++..|++++.|++|+|||++++ +.+..+..|....+.
T Consensus 143 Sg-s~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~---spdG~lLatgs~Dg~IrIwD~rsg---~~v~tl~~H~~~~~~ 215 (493)
T PTZ00421 143 SA-GADMVVNVWDVERGKAVEVIKCHSDQITSLEW---NLDGSLLCTTSKDKKLNIIDPRDG---TIVSSVEAHASAKSQ 215 (493)
T ss_pred EE-eCCCEEEEEECCCCeEEEEEcCCCCceEEEEE---ECCCCEEEEecCCCEEEEEECCCC---cEEEEEecCCCCcce
Confidence 88 89999999998643222222224444555553 346778888999999999999988 777777766223455
Q ss_pred EEEECCCC-cEEEEe----CCCcEEEEeCCCce-eeeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCce
Q 017601 246 AVCSSSTG-NIAVAG----ADRTVTIYDPRRWS-ALSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESSK 318 (369)
Q Consensus 246 ~v~~sp~g-~lasgs----~D~~v~vwD~~~~~-~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~~ 318 (369)
.+.|.+++ .+++++ .|+.|++||+++.. ++.....+....+....|++ ++++|++++ .|+.|++||+.+++.
T Consensus 216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCce
Confidence 67899987 665543 58999999999854 44444444244566778899 999999888 499999999999887
Q ss_pred eEEEE
Q 017601 319 VFAFR 323 (369)
Q Consensus 319 ~~~~~ 323 (369)
.+.+.
T Consensus 295 ~~~~~ 299 (493)
T PTZ00421 295 TFCSS 299 (493)
T ss_pred EEEee
Confidence 76654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=176.03 Aligned_cols=240 Identities=16% Similarity=0.187 Sum_probs=180.4
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCC--CCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGK--DVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
-.+.|++|.|++++ ..+++.+.+-.+.++|...+.. .+...+| |+-.+.|-......+.++.
T Consensus 13 ~~~~i~sl~fs~~G----~~litss~dDsl~LYd~~~g~~~~ti~skky------------G~~~~~Fth~~~~~i~sSt 76 (311)
T KOG1446|consen 13 TNGKINSLDFSDDG----LLLITSSEDDSLRLYDSLSGKQVKTINSKKY------------GVDLACFTHHSNTVIHSST 76 (311)
T ss_pred CCCceeEEEecCCC----CEEEEecCCCeEEEEEcCCCceeeEeecccc------------cccEEEEecCCceEEEccC
Confidence 46889999999984 6677777777999999986632 1222222 2334777665555666554
Q ss_pred cccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 169 SFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 169 s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
-.|.+|+..++. +.+|-+. .|...|+.+...| -+..+++++.|++|++||+|.. +|...+... .-..
T Consensus 77 k~d~tIryLsl~dNkylRYF~--GH~~~V~sL~~sP---~~d~FlS~S~D~tvrLWDlR~~---~cqg~l~~~---~~pi 145 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYFP--GHKKRVNSLSVSP---KDDTFLSSSLDKTVRLWDLRVK---KCQGLLNLS---GRPI 145 (311)
T ss_pred CCCCceEEEEeecCceEEEcC--CCCceEEEEEecC---CCCeEEecccCCeEEeeEecCC---CCceEEecC---CCcc
Confidence 568999999874 4454443 2556667766544 4579999999999999999987 565544432 2235
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCCC--ceeeeecc---ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeE
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPRR--WSALSRWV---HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVF 320 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~~--~~~~~~~~---~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~ 320 (369)
+||.|+| .+|+|.....|+|||+|. ..+..++. +. ..+.+.+.||| ||++++.+...+.+++.|.-.|..+.
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~-~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND-EAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKS 223 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC-ccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEee
Confidence 7899999 888888888999999998 34555443 34 57899999999 99999999999999999999999999
Q ss_pred EEEcCCCee----eeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 321 AFRGDSNWL----GFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 321 ~~~g~~~~~----~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+|.++.+-. .....||++++++|+.||+|.+|++++++.
T Consensus 224 tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 224 TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 998876322 222367999999999999999999999864
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=180.90 Aligned_cols=216 Identities=19% Similarity=0.203 Sum_probs=159.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCc-----cccccc-cCCCCCCCCCCeeEEEECCCCc
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVD-----RLTYSV-LPQDCGVGEGSWSGLCFSPSQW 161 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~p~~~ 161 (369)
..+|.+.|+++.+.+.+ +..+.|+..+|.+-+||++...+-.. .++-.+ .+|. ..++-++..+-|-|.+.
T Consensus 39 ~r~HgGsvNsL~id~te---grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~-~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTE---GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHE-NGHKYAISSAIWYPIDT 114 (397)
T ss_pred eccCCCccceeeecccc---ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCC-ccceeeeeeeEEeeecC
Confidence 35799999999999886 68899999999999999986531000 000001 1121 12234577899999999
Q ss_pred eeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEE-EEcCCeEEEEeCCcccCCceeeeeeccC
Q 017601 162 SMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLA-VTEGCQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla-~s~d~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
+++.++ |+|+++++||........ .+.-+..+-..+..|... ...|+| +..|-+|++-|+.++ .+-+.+.+|
T Consensus 115 GmFtss-SFDhtlKVWDtnTlQ~a~-~F~me~~VYshamSp~a~-sHcLiA~gtr~~~VrLCDi~SG---s~sH~LsGH- 187 (397)
T KOG4283|consen 115 GMFTSS-SFDHTLKVWDTNTLQEAV-DFKMEGKVYSHAMSPMAM-SHCLIAAGTRDVQVRLCDIASG---SFSHTLSGH- 187 (397)
T ss_pred ceeecc-cccceEEEeecccceeeE-EeecCceeehhhcChhhh-cceEEEEecCCCcEEEEeccCC---cceeeeccc-
Confidence 999988 999999999987543222 122222222222223222 234554 557889999999999 899999998
Q ss_pred CCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCc-eeeeecc--------------ccccCceEEEEEcCCCCCEEEEEE
Q 017601 241 GDILYAVCSSSTG--NIAVAGADRTVTIYDPRRW-SALSRWV--------------HCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 241 ~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~-~~~~~~~--------------~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
.+.|.++.|+|.. .||+|+.||.|++||+|+- .++..+. .| .+.|.+++|+. ++.++++++
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah-~gkvngla~tS-d~~~l~~~g 265 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH-YGKVNGLAWTS-DARYLASCG 265 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc-cceeeeeeecc-cchhhhhcc
Confidence 8999999999998 8999999999999999974 3443333 45 67899999999 999999999
Q ss_pred CCCeEEEEECcCC
Q 017601 304 VDYEVFCGQWRES 316 (369)
Q Consensus 304 ~D~~i~vwd~~~~ 316 (369)
.|..+++|+...+
T Consensus 266 td~r~r~wn~~~G 278 (397)
T KOG4283|consen 266 TDDRIRVWNMESG 278 (397)
T ss_pred CccceEEeecccC
Confidence 9999999998764
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=197.48 Aligned_cols=257 Identities=18% Similarity=0.165 Sum_probs=199.7
Q ss_pred ccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCce
Q 017601 83 SSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 83 ~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 162 (369)
...+++.+|+.+|.++++|.++ .+++|+.. +.+.+|+.++... ...+.. +-+.+..|-| ++.
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~----~~~~Sga~-~SikiWn~~t~kc-----iRTi~~-------~y~l~~~Fvp-gd~ 425 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDS----ILLASGAG-ESIKIWNRDTLKC-----IRTITC-------GYILASKFVP-GDR 425 (888)
T ss_pred cceeeeccchhheeEEEeecCc----eeeeecCC-CcEEEEEccCcce-----eEEecc-------ccEEEEEecC-CCc
Confidence 4556788999999999999884 67777654 6899999986521 112111 1133688999 666
Q ss_pred eEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC--Cce--e---
Q 017601 163 MAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN--GGC--L--- 233 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~--~~~--~--- 233 (369)
++++| ...|.+.+||... .+.+++ .|...+-.++ .+||+..++++|.|.+|++||..--.. +.. +
T Consensus 426 ~Iv~G-~k~Gel~vfdlaS~~l~Eti~--AHdgaIWsi~---~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 426 YIVLG-TKNGELQVFDLASASLVETIR--AHDGAIWSIS---LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred eEEEe-ccCCceEEEEeehhhhhhhhh--ccccceeeee---ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 77777 7899999999752 233332 2444444444 346788999999999999999862211 111 1
Q ss_pred ---eeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 234 ---HRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 234 ---~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
+++.. ...|.|+++|||| +||++=-|.+|+||-+.+.+-.-++.|| +-+|.++..|| |++.+++||.|+.|+
T Consensus 500 ~~~rtLel--~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH-kLPV~smDIS~-DSklivTgSADKnVK 575 (888)
T KOG0306|consen 500 KHTRTLEL--EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH-KLPVLSMDISP-DSKLIVTGSADKNVK 575 (888)
T ss_pred ccceEEec--cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc-ccceeEEeccC-CcCeEEeccCCCceE
Confidence 22333 3889999999999 9999999999999999999999999999 99999999999 999999999999999
Q ss_pred EEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 310 CGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 310 vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
+|-++=|.|...|-+|... +.+..+|...++++++.|+.|+-||-+.-+ .++.|.||.
T Consensus 576 iWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-~iq~L~~H~ 634 (888)
T KOG0306|consen 576 IWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-EIQKLDGHH 634 (888)
T ss_pred EeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-hheeeccch
Confidence 9999999999999998732 556668888899999999999999987665 577788774
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-24 Score=191.33 Aligned_cols=244 Identities=15% Similarity=0.173 Sum_probs=189.2
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+-.|.++|+.+.|-++. ..++++..+-.|.+|++..+..+..+ .+.+ .-+++..+.|.+++...|| +
T Consensus 171 ld~h~gev~~v~~l~~s----dtlatgg~Dr~Ik~W~v~~~k~~~~~---tLaG-----s~g~it~~d~d~~~~~~iA-a 237 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNS----DTLATGGSDRIIKLWNVLGEKSELIS---TLAG-----SLGNITSIDFDSDNKHVIA-A 237 (459)
T ss_pred hhccccccceeEEccCc----chhhhcchhhhhhhhhcccchhhhhh---hhhc-----cCCCcceeeecCCCceEEe-e
Confidence 45799999999998873 68999999999999999865321111 1111 1234678999996655444 4
Q ss_pred ecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|+.+++|+++. ...++.. |...+....... ....+++++.|.++++||++.. .|.+++... ..++
T Consensus 238 -s~d~~~r~Wnvd~~r~~~TLsG--HtdkVt~ak~~~---~~~~vVsgs~DRtiK~WDl~k~---~C~kt~l~~--S~cn 306 (459)
T KOG0288|consen 238 -SNDKNLRLWNVDSLRLRHTLSG--HTDKVTAAKFKL---SHSRVVSGSADRTIKLWDLQKA---YCSKTVLPG--SQCN 306 (459)
T ss_pred -cCCCceeeeeccchhhhhhhcc--cccceeeehhhc---cccceeeccccchhhhhhhhhh---heecccccc--cccc
Confidence 6999999999873 2233332 444444444322 1235889999999999999987 787776543 6677
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
.|+.+ . .+++|..|++|++||+|...+..+...+ +.|++|..++ ++..|++++.|.++.+.|+++.+....|+.
T Consensus 307 DI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 307 DIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred ceEec--ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeec
Confidence 77665 5 8899999999999999999999999987 5999999999 999999999999999999999888888864
Q ss_pred C-----CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcch
Q 017601 325 D-----SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 325 ~-----~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~ 360 (369)
. +.|..+..+|++.++++||.||.|+||++.+++.+
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE 422 (459)
T ss_pred cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence 3 34556666889999999999999999999998753
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=190.96 Aligned_cols=256 Identities=16% Similarity=0.129 Sum_probs=183.5
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+++.+|+..|.++++.|. +.++++++-+=.|.+||+..-...... -..++|... -.+.+++|++.++.+|+
T Consensus 161 i~l~hgtk~Vsal~~Dp~----GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr~l~P~E~----h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPS----GARFVSGSLDYTVKFWDFQGMDASMRS-FRQLQPCET----HQINSLQYSVTGDQILV 231 (641)
T ss_pred EeccCCceEEEEeeecCC----CceeeeccccceEEEEecccccccchh-hhccCcccc----cccceeeecCCCCeEEE
Confidence 446788999999999987 479999998889999999855322211 223444321 12458999998887776
Q ss_pred EEecccceEEEEeCCcc-----------eEEE-EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCcee
Q 017601 166 VARSFSKSIDVYDQDIH-----------LRTL-RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCL 233 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~-----------~~~~-~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~ 233 (369)
+. .....+|+|-+.. ++.+ .+..|...++...|+|.+. +.|++++.|++++|||+...+ +.+
T Consensus 232 vs--g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k--~~FlT~s~DgtlRiWdv~~~k--~q~ 305 (641)
T KOG0772|consen 232 VS--GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK--EEFLTCSYDGTLRIWDVNNTK--SQL 305 (641)
T ss_pred Ee--cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc--cceEEecCCCcEEEEecCCch--hhe
Confidence 65 4567889986421 1222 1223555666777777654 689999999999999998654 333
Q ss_pred eeeecc----CCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCcee--eee-ccccccC--ceEEEEEcCCCCCEEEEEE
Q 017601 234 HRICGS----VGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSA--LSR-WVHCSKY--EITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 234 ~~~~~~----~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~--~~~-~~~h~~~--~v~~l~~sp~d~~~l~s~s 303 (369)
+.+.+. ..-++++++|+|+| +||+|..||+|.+||.++... ... -..| .. .|++|.||+ ||++|+|-|
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH-~~g~~Itsi~FS~-dg~~LlSRg 383 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAH-LPGQDITSISFSY-DGNYLLSRG 383 (641)
T ss_pred eEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeecc-CCCCceeEEEecc-ccchhhhcc
Confidence 334321 14578999999999 999999999999999876432 222 2366 66 899999999 999999999
Q ss_pred CCCeEEEEECcC-CceeEEEEcCCCe---eeeeEcCCCCEEEEEeC------CCcEEEEECCCCc
Q 017601 304 VDYEVFCGQWRE-SSKVFAFRGDSNW---LGFSKCSNRDVLGGWSD------SGSIFVADVVAKE 358 (369)
Q Consensus 304 ~D~~i~vwd~~~-~~~~~~~~g~~~~---~~~~~~~d~~~l~sgs~------dg~I~iWd~~~~~ 358 (369)
.|.++++||++. .++++.+.|-.+. .....+|+.++|++|+. .|+++++|..+-+
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 999999999987 5666666553211 12233568899999874 4789999987654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=171.51 Aligned_cols=205 Identities=12% Similarity=0.138 Sum_probs=168.8
Q ss_pred CCCeeEEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCC
Q 017601 148 EGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLR 225 (369)
Q Consensus 148 ~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~ 225 (369)
++.+..+.|+-++ ++.++| +.|++|+||+.- ..++++... ...+--.. .+.|+..|++++.|..+.+||+.
T Consensus 17 qgaV~avryN~dG-nY~ltc-GsdrtvrLWNp~rg~liktYsgh--G~EVlD~~---~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 17 QGAVRAVRYNVDG-NYCLTC-GSDRTVRLWNPLRGALIKTYSGH--GHEVLDAA---LSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ccceEEEEEccCC-CEEEEc-CCCceEEeecccccceeeeecCC--Cceeeecc---ccccccccccCCCCceEEEEEcc
Confidence 4456789999854 566666 789999999974 455554332 22232222 12356799999999999999999
Q ss_pred cccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 226 MKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
++ +.++++.+| ...|+++.|+.+. .+++|+.|.++++||-|+ .+|++.+... .+.|.++..+. ..+++|
T Consensus 90 TG---kv~Rr~rgH-~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si~v~~---heIvaG 161 (307)
T KOG0316|consen 90 TG---KVDRRFRGH-LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSIDVAE---HEIVAG 161 (307)
T ss_pred cC---eeeeecccc-cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEEEecc---cEEEee
Confidence 99 899999988 8999999999999 999999999999999887 6788898888 89999999876 789999
Q ss_pred ECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCCC
Q 017601 303 GVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLVN 369 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~~ 369 (369)
|.||++|.+|++.+...-.+.||. ..++..++|++.+..++.|+++++-|-.+|+ .+...+||.|
T Consensus 162 S~DGtvRtydiR~G~l~sDy~g~p-it~vs~s~d~nc~La~~l~stlrLlDk~tGk-lL~sYkGhkn 226 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDYFGHP-ITSVSFSKDGNCSLASSLDSTLRLLDKETGK-LLKSYKGHKN 226 (307)
T ss_pred ccCCcEEEEEeecceeehhhcCCc-ceeEEecCCCCEEEEeeccceeeecccchhH-HHHHhccccc
Confidence 999999999999999988888887 1344557799999999999999999999997 4677888876
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=178.47 Aligned_cols=296 Identities=14% Similarity=0.179 Sum_probs=209.4
Q ss_pred EecCCCceEEEEEEeCCeEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEE
Q 017601 35 HVNEDGCSCFVYIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSV 114 (369)
Q Consensus 35 ~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~ 114 (369)
.++++| .++|+|..=..|++---..++...+..-.++.+++.-++-+-++..|.++|+++.|.|.+ .+|+|+
T Consensus 119 afs~DG----~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre----~ILiS~ 190 (430)
T KOG0640|consen 119 AFSPDG----SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE----TILISG 190 (430)
T ss_pred eeCCCC----cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh----heEEec
Confidence 355777 688988765555542223444333322234555555666677788999999999999985 799999
Q ss_pred ecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceE---EEEeeeC
Q 017601 115 DSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLR---TLRTLWY 191 (369)
Q Consensus 115 d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~---~~~~~~~ 191 (369)
+.+++|.+||+.+... ...+.+-.. -..+.+++|+|.++ +++++ -.-.++++||+..... .....+|
T Consensus 191 srD~tvKlFDfsK~sa---KrA~K~~qd-----~~~vrsiSfHPsGe-fllvg-TdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSA---KRAFKVFQD-----TEPVRSISFHPSGE-FLLVG-TDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred cCCCeEEEEecccHHH---HHHHHHhhc-----cceeeeEeecCCCc-eEEEe-cCCCceeEEeccceeEeeecCccccc
Confidence 9999999999975421 111111000 12356899999655 56666 5678999999864321 1122335
Q ss_pred CcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec-cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeC
Q 017601 192 PSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG-SVGDILYAVCSSSTG-NIAVAGADRTVTIYDP 269 (369)
Q Consensus 192 ~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~ 269 (369)
...++.+.+ ++.+..+++++.||.|+|||--++ +|+.++.. |.+..|.+..|..+| ++.+.+.|.+|++|.+
T Consensus 261 t~ai~~V~Y---s~t~~lYvTaSkDG~IklwDGVS~---rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 261 TGAITQVRY---SSTGSLYVTASKDGAIKLWDGVSN---RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred ccceeEEEe---cCCccEEEEeccCCcEEeeccccH---HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence 556666664 345678899999999999998887 89888762 326889999999999 9999999999999999
Q ss_pred CCceeeeeccccc----cCceEEEEEcCCCCCEEEEEEC-CCeEEEEECcCCceeEEE-EcCCCe-eeeeEcCCCCEEEE
Q 017601 270 RRWSALSRWVHCS----KYEITGLSFSSIDSNYIYVQGV-DYEVFCGQWRESSKVFAF-RGDSNW-LGFSKCSNRDVLGG 342 (369)
Q Consensus 270 ~~~~~~~~~~~h~----~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~~~~~~~~~~-~g~~~~-~~~~~~~d~~~l~s 342 (369)
.+++++.++.|.- +.--+...|+. ...+++.-.. .+.++.||.++......+ .||.+. ..+..+|.+..+.+
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceee
Confidence 9999999887540 12235566777 7777766433 468999999997665555 366522 23556888899999
Q ss_pred EeCCCcEEEEECC
Q 017601 343 WSDSGSIFVADVV 355 (369)
Q Consensus 343 gs~dg~I~iWd~~ 355 (369)
+|.|..+++|--+
T Consensus 414 csdD~raRFWyrr 426 (430)
T KOG0640|consen 414 CSDDFRARFWYRR 426 (430)
T ss_pred ecccceeeeeeec
Confidence 9999999999643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-21 Score=160.79 Aligned_cols=245 Identities=15% Similarity=0.185 Sum_probs=174.5
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECC---CCceeEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSP---SQWSMAA 165 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p---~~~~~~a 165 (369)
..|++.|+|.+|+|++ .++|+++.+..|.+...+.......++...++-|+ +-+..++|-. .+..+++
T Consensus 86 khhkgsiyc~~ws~~g----eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd-----gtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCG----ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD-----GTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred cccCccEEEEEecCcc----CeEEecCCCceEEEEecccccccccCcceeeeecC-----CceeeeEEecCCCcCceEEE
Confidence 4689999999999984 89999999999988766644333333333333333 3355788843 2345677
Q ss_pred EEecccceEEEEeCC--cceEEEEeeeCCc-ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC--
Q 017601 166 VARSFSKSIDVYDQD--IHLRTLRTLWYPS-SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV-- 240 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~--~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~-- 240 (369)
+++..|-.|.+-|-+ +..+.+.. |.. .+....| .+-.+++++.|.+|++||+|-. .++.++....
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sg--htghilalysw-----n~~m~~sgsqdktirfwdlrv~---~~v~~l~~~~~~ 226 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSG--HTGHILALYSW-----NGAMFASGSQDKTIRFWDLRVN---SCVNTLDNDFHD 226 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecC--CcccEEEEEEe-----cCcEEEccCCCceEEEEeeecc---ceeeeccCcccC
Confidence 775556666666643 33333322 222 2333333 2457788899999999999988 7777654211
Q ss_pred ----CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 241 ----GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 241 ----~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
...|.+++..|.| +|++|-.|.+..+||+|-+++++.+..| ...|.++.||| ...+++++|.|..|++-|++.
T Consensus 227 ~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph-sadir~vrfsp-~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH-SADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC-ccceeEEEeCC-CceEEEEecccceEEEeeccc
Confidence 2679999999999 9999999999999999999999999999 99999999999 999999999999999999975
Q ss_pred C---c-eeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 316 S---S-KVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 316 ~---~-~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
. + .+.....|.. ...+..-+..--+++.|.|.++.+|-+
T Consensus 305 dla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 305 DLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred chhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 2 1 2222223431 112222345556889999999999975
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-24 Score=203.77 Aligned_cols=202 Identities=15% Similarity=0.209 Sum_probs=164.8
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG 230 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~ 230 (369)
|++|+|..+- +.++ -..|.|++||... .+..+.. |...+.-+.+++ ....|+++++|-+|++|+.++.
T Consensus 14 glsFHP~rPw-ILts-lHsG~IQlWDYRM~tli~rFde--HdGpVRgv~FH~---~qplFVSGGDDykIkVWnYk~r--- 83 (1202)
T KOG0292|consen 14 GLSFHPKRPW-ILTS-LHSGVIQLWDYRMGTLIDRFDE--HDGPVRGVDFHP---TQPLFVSGGDDYKIKVWNYKTR--- 83 (1202)
T ss_pred ceecCCCCCE-EEEe-ecCceeeeehhhhhhHHhhhhc--cCCccceeeecC---CCCeEEecCCccEEEEEecccc---
Confidence 7999997774 5555 6899999999753 3333333 334444444433 3459999999999999999998
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
+|+.++.+| -+.|..+.|++.- +|+++|+|.||+||+..+.+++..+.|| ...|.+..|+| ....++|+|.|.+||
T Consensus 84 rclftL~GH-lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhp-tEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 84 RCLFTLLGH-LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHP-TEDLIVSASLDQTVR 160 (1202)
T ss_pred eehhhhccc-cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCC-ccceEEEecccceEE
Confidence 899999988 7999999999999 9999999999999999999999999999 99999999999 889999999999999
Q ss_pred EEECcC--------C---------------------ceeEEEEcCCCeeeeeEc---CCCCEEEEEeCCCcEEEEECCCC
Q 017601 310 CGQWRE--------S---------------------SKVFAFRGDSNWLGFSKC---SNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 310 vwd~~~--------~---------------------~~~~~~~g~~~~~~~~~~---~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+||+.. + -..+.+.||. .++..+ +.-.+|+||++|+.|++|.+...
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD--RGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD--RGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc--cccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 999853 1 1234557887 344332 35689999999999999998766
Q ss_pred cc-hhhhcccCCC
Q 017601 358 EN-EISALKGLVN 369 (369)
Q Consensus 358 ~~-~~~~l~g~~~ 369 (369)
+. ++++..||+|
T Consensus 239 KaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYN 251 (1202)
T ss_pred cceeehhhhcccC
Confidence 54 7789999986
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=184.90 Aligned_cols=254 Identities=17% Similarity=0.157 Sum_probs=186.6
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.|.+.|.+++|.|.+ ...++|++|..|+|-+||+.+...+.++ .|...+|..+ +.++.|+|.+...+.++ |
T Consensus 184 v~~~Rit~l~fHPt~--~~~lva~GdK~G~VG~Wn~~~~~~d~d~-v~~f~~hs~~-----Vs~l~F~P~n~s~i~ss-S 254 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTE--NRKLVAVGDKGGQVGLWNFGTQEKDKDG-VYLFTPHSGP-----VSGLKFSPANTSQIYSS-S 254 (498)
T ss_pred ecccceEEEEecccC--cceEEEEccCCCcEEEEecCCCCCccCc-eEEeccCCcc-----ccceEecCCChhheeee-c
Confidence 578999999999975 4589999999999999999644333333 4555666544 45899999999999998 9
Q ss_pred ccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 170 FSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
+||+|++-|....+...-.......+ .+....++.++..++.+..=|.+.+||+|++. .....+..| ...|.++++
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~-~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~--s~~~~~~lh-~kKI~sv~~ 330 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNI-WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG--SEYENLRLH-KKKITSVAL 330 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccce-eeeeccccCCCccEEEeecccceEEEEeecCC--ccchhhhhh-hcccceeec
Confidence 99999999987543221111111112 22223344566788888776799999999883 334444434 479999999
Q ss_pred CCCC--cEEEEeCCCcEEEEeCCCce----eeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECc----CCcee
Q 017601 250 SSTG--NIAVAGADRTVTIYDPRRWS----ALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR----ESSKV 319 (369)
Q Consensus 250 sp~g--~lasgs~D~~v~vwD~~~~~----~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~----~~~~~ 319 (369)
+|.. .|||+|.|++++|||+|+-. ++-....| +..|.+..||| ++..|++.+.|.+|+|||.. .-+..
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H-rrsV~sAyFSP-s~gtl~TT~~D~~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH-RRSVNSAYFSP-SGGTLLTTCQDNEIRVFDSSCISAKDEPL 408 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccc-cceeeeeEEcC-CCCceEeeccCCceEEeecccccccCCcc
Confidence 9999 99999999999999999732 23344568 89999999999 66669999999999999983 33333
Q ss_pred EEEE---cCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 320 FAFR---GDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 320 ~~~~---g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.++. -+.+|....+ -++..+|+.|-.-..|-|+|-..++
T Consensus 409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 3332 2335554433 3488899999999999999988776
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=181.40 Aligned_cols=255 Identities=16% Similarity=0.201 Sum_probs=198.9
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+.+.-+.|..||||+ ..|++++.+|-+.+|++.++.-. ...+|..+.. -...+..+.+++|+. +..++|++
T Consensus 209 KFg~KSh~EcA~FSPDg----qyLvsgSvDGFiEVWny~~GKlr-KDLkYQAqd~-fMMmd~aVlci~FSR-DsEMlAsG 281 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDG----QYLVSGSVDGFIEVWNYTTGKLR-KDLKYQAQDN-FMMMDDAVLCISFSR-DSEMLASG 281 (508)
T ss_pred ecccccchhheeeCCCC----ceEeeccccceeeeehhccchhh-hhhhhhhhcc-eeecccceEEEeecc-cHHHhhcc
Confidence 35777889999999994 79999999999999999877321 1223433211 122344577899999 66789998
Q ss_pred ecccceEEEEeC--CcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQ--DIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+-||.|++|.+ +.+++.+.. .|...+..+. |+.|+..+++++.|.+++|.-++++ ++++.+.+| ...|+
T Consensus 282 -sqDGkIKvWri~tG~ClRrFdr-AHtkGvt~l~---FSrD~SqiLS~sfD~tvRiHGlKSG---K~LKEfrGH-sSyvn 352 (508)
T KOG0275|consen 282 -SQDGKIKVWRIETGQCLRRFDR-AHTKGVTCLS---FSRDNSQILSASFDQTVRIHGLKSG---KCLKEFRGH-SSYVN 352 (508)
T ss_pred -CcCCcEEEEEEecchHHHHhhh-hhccCeeEEE---EccCcchhhcccccceEEEeccccc---hhHHHhcCc-ccccc
Confidence 99999999976 455555431 2333344433 2346789999999999999999999 999999988 78899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc--ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV--HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~--~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
...|+++| .+++++.||+|++|+.++.+++.+++ +. ..+|+++-.-|.++..++.+-..++|.+-++. +..++.|
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~-d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsf 430 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGT-DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSF 430 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCC-cccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeee
Confidence 99999999 99999999999999999999999887 34 56899999988889999999999999999885 4566777
Q ss_pred Ec-CC---CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcch
Q 017601 323 RG-DS---NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 323 ~g-~~---~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~ 360 (369)
.. .. .+.+...+|.|+++++.++|+.++.+.+.+|+.+
T Consensus 431 sSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 431 SSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred ccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 42 21 1122222568999999999999999999888753
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=177.93 Aligned_cols=253 Identities=14% Similarity=0.151 Sum_probs=185.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCC------CCCCcccc-------ccccCCCCCCCCCCeeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTS------GKDVDRLT-------YSVLPQDCGVGEGSWSGL 154 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~------~~~~~~~~-------~~~~~~~~~~~~~~~~~l 154 (369)
+..|++.+.+.+|++|+ .++|+++.+..|.++|+..- .+.+.+.. ..+.-|. ..+..+
T Consensus 108 lt~HK~~cR~aafs~DG----~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~-----devn~l 178 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDG----SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV-----DEVNDL 178 (430)
T ss_pred EeecccceeeeeeCCCC----cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc-----Ccccce
Confidence 56899999999999994 79999999999999998721 11011100 0011111 235689
Q ss_pred EECCCCceeEEEEecccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 155 CFSPSQWSMAAVARSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 155 ~~~p~~~~~~a~~~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
.|+| .+.+++++ +.|++|++||..+. .+.++.++....+..+.++ |.|..++.+.+-.++++||+.+- +|
T Consensus 179 ~FHP-re~ILiS~-srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfH---PsGefllvgTdHp~~rlYdv~T~---Qc 250 (430)
T KOG0640|consen 179 DFHP-RETILISG-SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFH---PSGEFLLVGTDHPTLRLYDVNTY---QC 250 (430)
T ss_pred eecc-hhheEEec-cCCCeEEEEecccHHHHHHHHHhhccceeeeEeec---CCCceEEEecCCCceeEEeccce---eE
Confidence 9999 66788888 99999999998632 2334444444444444443 34667777888889999999987 66
Q ss_pred eeeee---ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 233 LHRIC---GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 233 ~~~~~---~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
...-. .+ .+.|+++.+|+.| +.++||.||.|++||--+++++.++. .|-..+|.+..|+. ++++++|.|.|..
T Consensus 251 fvsanPd~qh-t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 251 FVSANPDDQH-TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDST 328 (430)
T ss_pred eeecCccccc-ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcce
Confidence 54322 22 5889999999999 99999999999999998999999887 45356899999999 9999999999999
Q ss_pred EEEEECcCCceeEEEEcCCCeeeeeE------cCCCCEEEEEe-CCCcEEEEECCCCcc
Q 017601 308 VFCGQWRESSKVFAFRGDSNWLGFSK------CSNRDVLGGWS-DSGSIFVADVVAKEN 359 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~~~~~~~~------~~d~~~l~sgs-~dg~I~iWd~~~~~~ 359 (369)
+++|.+.+++++..+.|...-..... ....++++.-. ..+.+.-||.++...
T Consensus 329 vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 329 VKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred eeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 99999999999999987530000000 11445554444 467899999998764
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=168.24 Aligned_cols=196 Identities=14% Similarity=0.188 Sum_probs=157.5
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEe---eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRT---LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~---~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
.+||+|..+.+||+| +.|+.|+||+... .....++ ..|...+..+++ +|.++.|+++|.|.++.||--..+
T Consensus 19 ~~awhp~~g~ilAsc-g~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw---sp~g~~La~aSFD~t~~Iw~k~~~- 93 (312)
T KOG0645|consen 19 SVAWHPGKGVILASC-GTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW---SPHGRYLASASFDATVVIWKKEDG- 93 (312)
T ss_pred EEEeccCCceEEEee-cCCceEEEEecCCCCcEEEEEeccccchheeeeeee---cCCCcEEEEeeccceEEEeecCCC-
Confidence 699999546678888 9999999999862 2222221 135556666664 345778888999999999976543
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC---ceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR---WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~---~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
.-+++.++.+| ...|-|++||++| +||+++.|++|-||.+.. .++...++.| ...|-.+.|+| ...+|+|+|.
T Consensus 94 efecv~~lEGH-EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqDVK~V~WHP-t~dlL~S~SY 170 (312)
T KOG0645|consen 94 EFECVATLEGH-ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQDVKHVIWHP-TEDLLFSCSY 170 (312)
T ss_pred ceeEEeeeecc-ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-cccccEEEEcC-CcceeEEecc
Confidence 23678889988 8999999999999 999999999999999874 5677889999 99999999999 8999999999
Q ss_pred CCeEEEEECcC---CceeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 305 DYEVFCGQWRE---SSKVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 305 D~~i~vwd~~~---~~~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
|++|++|.-.. -++.+++.+|.+ .-.+...+.|..|+++++|++|+||...+
T Consensus 171 DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 171 DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 99999998763 368999999972 11333355799999999999999998543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-22 Score=192.38 Aligned_cols=186 Identities=11% Similarity=0.023 Sum_probs=142.3
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC-----CceeeeeeccCCC
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN-----GGCLHRICGSVGD 242 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~-----~~~~~~~~~~~~~ 242 (369)
++.++.|++|+..+.........|...+..+.+.|+ ++..|++++.|++|+|||++++.. ..++..+.+| ..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~--~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH-~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPC--FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH-KK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC-CC
Confidence 467889999997653322223345566767765543 246888899999999999986421 0233455655 68
Q ss_pred cEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeE
Q 017601 243 ILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVF 320 (369)
Q Consensus 243 ~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~ 320 (369)
.|.+++|+|++ .|++|+.|++|+|||+++++.+..+. | ...|.+++|+| +|.+|++++.|+.|+|||+++++.+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~-~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-M-PKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-c-CCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEE
Confidence 89999999998 56899999999999999998877775 5 57899999999 99999999999999999999999999
Q ss_pred EEEcCCCeeeee--E----cCCCCEEEEEeCCC----cEEEEECCCCcc
Q 017601 321 AFRGDSNWLGFS--K----CSNRDVLGGWSDSG----SIFVADVVAKEN 359 (369)
Q Consensus 321 ~~~g~~~~~~~~--~----~~d~~~l~sgs~dg----~I~iWd~~~~~~ 359 (369)
.+.+|....... . .+++.+|++++.|+ +|+|||+++...
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~ 252 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS 252 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence 999987321111 1 25778888887774 799999986443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=193.54 Aligned_cols=248 Identities=13% Similarity=0.182 Sum_probs=181.5
Q ss_pred Cccceee---EEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc-cccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 90 PHRSEVQ---SIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL-TYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 90 ~H~~~V~---~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
.|+..|+ .+..+..+ ...|.+++.+|.|++|+........... ...++.|.. -+..++... ++..++
T Consensus 19 qn~~~v~~~~~Lq~da~~---~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsD-----WVNDiiL~~-~~~tlI 89 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPN---GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSD-----WVNDIILCG-NGKTLI 89 (735)
T ss_pred hccccccchhhccccCCC---CceEEecCCCceEEEeccccccCCcccchhhhhhhhHh-----HHhhHHhhc-CCCceE
Confidence 4556666 55555543 3579999999999999998664321111 112222321 112344444 334677
Q ss_pred EEecccceEEEEeCCcc----eEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC-------Ccee
Q 017601 166 VARSFSKSIDVYDQDIH----LRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN-------GGCL 233 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~----~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~-------~~~~ 233 (369)
++ |.|.+|++|+.... .++++.+. ...++++.. ++...++++|-|+.|+|||+.++.. ....
T Consensus 90 S~-SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~a-----k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 90 SA-SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIA-----KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred Ee-cCCceEEEeecccCcchhHhhhhcccchheeeeecc-----cCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 77 89999999997543 33343322 223344332 3345677788899999999997621 1111
Q ss_pred eeee-ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 234 HRIC-GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 234 ~~~~-~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
..+. ++ ...||+++-++.| .|++|+..+-+++||.|+.+.+..+.|| ++.|..+..++ ||+.++|+|.|++|++|
T Consensus 164 ~sl~sG~-k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH-TdNVr~ll~~d-DGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 164 NSLGSGP-KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-TDNVRVLLVND-DGTRLLSASSDGTIRLW 240 (735)
T ss_pred ccCCCCC-ccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc-ccceEEEEEcC-CCCeEeecCCCceEEee
Confidence 2222 33 5789999999999 9999999999999999999999999999 99999999999 99999999999999999
Q ss_pred ECcCCceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCC
Q 017601 312 QWRESSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 312 d~~~~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
|+...+|++++..|. .++.. .++=..+++|+.||.|+.=|+++.
T Consensus 241 dLgqQrCl~T~~vH~--e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 241 DLGQQRCLATYIVHK--EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eccccceeeeEEecc--CceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999999999998 44433 335568999999999999999874
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=186.79 Aligned_cols=239 Identities=12% Similarity=0.090 Sum_probs=182.3
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccC-CCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLP-QDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
+..|.++.|++++ ..||.+-.+|.|.+||...... ...+.. |. .-|.+++|+. ..+.++ +.
T Consensus 217 ~~~vtSv~ws~~G----~~LavG~~~g~v~iwD~~~~k~-----~~~~~~~h~-----~rvg~laW~~---~~lssG-sr 278 (484)
T KOG0305|consen 217 EELVTSVKWSPDG----SHLAVGTSDGTVQIWDVKEQKK-----TRTLRGSHA-----SRVGSLAWNS---SVLSSG-SR 278 (484)
T ss_pred CCceEEEEECCCC----CEEEEeecCCeEEEEehhhccc-----cccccCCcC-----ceeEEEeccC---ceEEEe-cC
Confidence 8999999999984 7999999999999999876522 111111 21 2255789974 455555 99
Q ss_pred cceEEEEeCCcceEEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 171 SKSIDVYDQDIHLRTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 171 d~~i~lwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
|+.|..+|+......+. ...|...+.-+.+ ++|+.++++++.|+.+.|||.... .++.++..| ...|.+++|
T Consensus 279 ~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw---s~d~~~lASGgnDN~~~Iwd~~~~---~p~~~~~~H-~aAVKA~aw 351 (484)
T KOG0305|consen 279 DGKILNHDVRISQHVVSTLQGHRQEVCGLKW---SPDGNQLASGGNDNVVFIWDGLSP---EPKFTFTEH-TAAVKALAW 351 (484)
T ss_pred CCcEEEEEEecchhhhhhhhcccceeeeeEE---CCCCCeeccCCCccceEeccCCCc---cccEEEecc-ceeeeEeee
Confidence 99999999863332222 2224444544543 346788889999999999999766 677777766 699999999
Q ss_pred CCCC--cEEEEe--CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCceeEEEEc
Q 017601 250 SSTG--NIAVAG--ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 250 sp~g--~lasgs--~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~~~~~~~g 324 (369)
+|-. +||+|+ .|+.|++||..++..+..+... ..|.+|.|++....++.+-| .++.|.||++.+-..+..+.|
T Consensus 352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g 429 (484)
T KOG0305|consen 352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG--SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG 429 (484)
T ss_pred CCCccCceEEcCCCcccEEEEEEcCCCcEecccccC--CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC
Confidence 9987 899864 6999999999999999887754 78999999993334444434 477999999999999999999
Q ss_pred CCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 325 DSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 325 ~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
|.. ...+..+|||..|++|+.|.++++|++-..
T Consensus 430 H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 430 HTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 982 233344779999999999999999998663
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-23 Score=196.16 Aligned_cols=249 Identities=14% Similarity=0.166 Sum_probs=179.0
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
..++.+.|..- ...+||+++..|.|-+||+...... ...+.+..|... +..+.|++..+.++++| |-|+
T Consensus 88 ~S~~DVkW~~~---~~NlIAT~s~nG~i~vWdlnk~~rn--k~l~~f~EH~Rs-----~~~ldfh~tep~iliSG-SQDg 156 (839)
T KOG0269|consen 88 YSAADVKWGQL---YSNLIATCSTNGVISVWDLNKSIRN--KLLTVFNEHERS-----ANKLDFHSTEPNILISG-SQDG 156 (839)
T ss_pred eehhhcccccc---hhhhheeecCCCcEEEEecCccccc--hhhhHhhhhccc-----eeeeeeccCCccEEEec-CCCc
Confidence 55677788632 2479999999999999999863211 112334445443 34799999999998888 9999
Q ss_pred eEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEEC
Q 017601 173 SIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSS 250 (369)
Q Consensus 173 ~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~s 250 (369)
+|++||+.. ...+++. ...++..+.+.| ..+..|+++.+.|.+++||+|... ++...+..| .++|+|+.|+
T Consensus 157 ~vK~~DlR~~~S~~t~~~--nSESiRDV~fsp--~~~~~F~s~~dsG~lqlWDlRqp~--r~~~k~~AH-~GpV~c~nwh 229 (839)
T KOG0269|consen 157 TVKCWDLRSKKSKSTFRS--NSESIRDVKFSP--GYGNKFASIHDSGYLQLWDLRQPD--RCEKKLTAH-NGPVLCLNWH 229 (839)
T ss_pred eEEEEeeecccccccccc--cchhhhceeecc--CCCceEEEecCCceEEEeeccCch--hHHHHhhcc-cCceEEEeec
Confidence 999999853 2333322 333344444333 235688889999999999999875 566666655 6999999999
Q ss_pred CCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC--CCeEEEEECcCC-ceeEEEEcCC
Q 017601 251 STG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV--DYEVFCGQWRES-SKVFAFRGDS 326 (369)
Q Consensus 251 p~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~--D~~i~vwd~~~~-~~~~~~~g~~ 326 (369)
|++ +|||||.|++|+|||+...+......-+-..+|..|.|-|....+|+++++ |..|+|||++.. -+..+|..|.
T Consensus 230 Pnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 230 PNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred CCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 998 999999999999999987554433333325789999999966777888875 789999999874 4567777777
Q ss_pred CeeeeeE--cCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 327 NWLGFSK--CSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 327 ~~~~~~~--~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
...+-.. ..|...+.+++.||+|..-.++++-.
T Consensus 310 ~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 310 DSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred ccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 3322222 22677899999999987655555443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-23 Score=184.80 Aligned_cols=205 Identities=16% Similarity=0.173 Sum_probs=158.3
Q ss_pred CCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEE----------EEeeeCCcceeeeccCCCCCCCCcEEEEEcCC
Q 017601 148 EGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRT----------LRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC 217 (369)
Q Consensus 148 ~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~ 217 (369)
++.+..+..-|+++.++|+. +..+.|.|||..++... ++...|...-.-+.|.++ ..+.|+++++|+
T Consensus 124 ~gEVnRaRymPQnp~iVAt~-t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~--~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATK-TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ--QEGTLLSGSDDH 200 (422)
T ss_pred CccchhhhhCCCCCcEEEec-CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc--cceeEeeccCCC
Confidence 34566788899999998887 88999999997532111 122222221111233332 347999999999
Q ss_pred eEEEEeCCcccC----CceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCC--CceeeeeccccccCceEEE
Q 017601 218 QLTIWDLRMKEN----GGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPR--RWSALSRWVHCSKYEITGL 289 (369)
Q Consensus 218 ~v~iwD~~~~~~----~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~--~~~~~~~~~~h~~~~v~~l 289 (369)
+|.+||+..... ..+...+.+| ...|..++|+|.. +|++.+.|+.+.|||+| +.++.+...+| ..+|.++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h-~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah-~~~vn~~ 278 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGH-EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH-SAEVNCV 278 (422)
T ss_pred cEEEEeccccccCCccccceEEeecC-CcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc-CCceeEE
Confidence 999999986533 1233446666 7899999999988 99999999999999999 56667788899 9999999
Q ss_pred EEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCCC-eeeeeEcC-CCCEEEEEeCCCcEEEEECCCC
Q 017601 290 SFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDSN-WLGFSKCS-NRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 290 ~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~-~~~~~~~~-d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+|+|.++..||+||.|++|++||+|+ ..++.+|.+|.. ...+..+| ....|||++.|+.+.|||+..-
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 99999999999999999999999998 678899999982 12333456 6788999999999999998753
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=170.84 Aligned_cols=204 Identities=15% Similarity=0.125 Sum_probs=167.2
Q ss_pred ccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 85 MLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 85 ~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
.+....|+.-|.+++|+.|. ..|.+++...-+++||++.... ....+..|. +++..+-|... +..|
T Consensus 93 elhsf~hkhivk~~af~~ds----~~lltgg~ekllrvfdln~p~A----pp~E~~ght-----g~Ir~v~wc~e-D~~i 158 (334)
T KOG0278|consen 93 ELHSFEHKHIVKAVAFSQDS----NYLLTGGQEKLLRVFDLNRPKA----PPKEISGHT-----GGIRTVLWCHE-DKCI 158 (334)
T ss_pred hhhhhhhhheeeeEEecccc----hhhhccchHHHhhhhhccCCCC----CchhhcCCC-----CcceeEEEecc-CceE
Confidence 34456899999999999984 6788888888899999875421 112233333 34556778774 4566
Q ss_pred EEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 165 AVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
+++ .+|++||+||.. +.++++....++.++...+ ++.+++.+..+.|++||..+- ..++.+..+ .
T Consensus 159 LSS-add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-------dG~ilTia~gssV~Fwdaksf---~~lKs~k~P--~ 225 (334)
T KOG0278|consen 159 LSS-ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-------DGRILTIAYGSSVKFWDAKSF---GLLKSYKMP--C 225 (334)
T ss_pred Eee-ccCCceEEEEeccCcEEEEEecCCCCcceeecc-------CCCEEEEecCceeEEeccccc---cceeeccCc--c
Confidence 776 899999999964 6677776666667777665 579999999999999999987 788888877 8
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeec-cccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRW-VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~-~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
.|.+.+.+|+. .+++|++|..++.||..+++.+..+ ++| -++|.+|.|+| ||...++||.||+||+|....++
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSP-dGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSP-DGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECC-CCceeeccCCCceEEEEEecCCC
Confidence 89999999999 9999999999999999999999886 899 99999999999 99999999999999999987643
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=183.91 Aligned_cols=236 Identities=14% Similarity=0.106 Sum_probs=181.6
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
+-+-+..|-|. ...+..+.+.|.+-++|+..... -...+.|+. .+-.++.+|++ ..++++ |.|+
T Consensus 413 ~y~l~~~Fvpg----d~~Iv~G~k~Gel~vfdlaS~~l-----~Eti~AHdg-----aIWsi~~~pD~-~g~vT~-saDk 476 (888)
T KOG0306|consen 413 GYILASKFVPG----DRYIVLGTKNGELQVFDLASASL-----VETIRAHDG-----AIWSISLSPDN-KGFVTG-SADK 476 (888)
T ss_pred ccEEEEEecCC----CceEEEeccCCceEEEEeehhhh-----hhhhhcccc-----ceeeeeecCCC-CceEEe-cCCc
Confidence 36778888885 36777788999999999985421 112233433 23369999955 456777 8999
Q ss_pred eEEEEeCC-------cceEEE-----EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC
Q 017601 173 SIDVYDQD-------IHLRTL-----RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 173 ~i~lwd~~-------~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
+|++||.. ...+.+ +++.-+..+-.+. ++||+..|+.+--|++|++|=+.+- +-.-.+-+|
T Consensus 477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~---~Spdgk~LaVsLLdnTVkVyflDtl---KFflsLYGH- 549 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS---VSPDGKLLAVSLLDNTVKVYFLDTL---KFFLSLYGH- 549 (888)
T ss_pred EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE---EcCCCcEEEEEeccCeEEEEEecce---eeeeeeccc-
Confidence 99999852 111111 1222233333443 3465544444456999999999877 665566666
Q ss_pred CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCcee
Q 017601 241 GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKV 319 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~ 319 (369)
.-||.|+..|||+ .++|||.|++|+||-+.=|.+-..+-+| .+.|.+|.|-| ....+.++|.|+.|+-||-..-+++
T Consensus 550 kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH-dDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 550 KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH-DDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc-cCceeEEEEcc-cceeEEEecCcceEEeechhhhhhh
Confidence 6899999999999 9999999999999999999999999999 99999999999 8889999999999999999999999
Q ss_pred EEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECC
Q 017601 320 FAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 320 ~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+.+.||. ..+.+ .++|.+++|+|.|.+|++|...
T Consensus 628 q~L~~H~--~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 628 QKLDGHH--SEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred eeeccch--heeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 9999987 44333 5699999999999999999754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-21 Score=190.00 Aligned_cols=250 Identities=17% Similarity=0.167 Sum_probs=184.3
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC-CCCcc------------ccccccCCCCCCCCCCeeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG-KDVDR------------LTYSVLPQDCGVGEGSWSGL 154 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~l 154 (369)
...|.+.|+|++|++|+ ..+|+++++..|.+|...... ...-+ ....+..|+ ..+..+
T Consensus 65 m~~h~~sv~CVR~S~dG----~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-----~DV~Dv 135 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDG----SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-----SDVLDV 135 (942)
T ss_pred eccccCceeEEEECCCC----CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-----Ccccee
Confidence 45799999999999984 899999999999999988411 11100 011122333 335689
Q ss_pred EECCCCceeEEEEecccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 155 CFSPSQWSMAAVARSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 155 ~~~p~~~~~~a~~~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
+|+| ++.++|++ |.|++|.||+.... ++.++. |...+.-+. ++|-|.+|++-++|++|+||++..- +.
T Consensus 136 ~Wsp-~~~~lvS~-s~DnsViiwn~~tF~~~~vl~~--H~s~VKGvs---~DP~Gky~ASqsdDrtikvwrt~dw---~i 205 (942)
T KOG0973|consen 136 NWSP-DDSLLVSV-SLDNSVIIWNAKTFELLKVLRG--HQSLVKGVS---WDPIGKYFASQSDDRTLKVWRTSDW---GI 205 (942)
T ss_pred ccCC-CccEEEEe-cccceEEEEccccceeeeeeec--ccccccceE---ECCccCeeeeecCCceEEEEEcccc---ee
Confidence 9999 66788988 99999999997654 333322 333222222 3456788999999999999997654 45
Q ss_pred eeeeeccC-----CCcEEEEEECCCC-cEEEEeC----CCcEEEEeCCCceeeeeccccccCceEEEEEcCC----C---
Q 017601 233 LHRICGSV-----GDILYAVCSSSTG-NIAVAGA----DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI----D--- 295 (369)
Q Consensus 233 ~~~~~~~~-----~~~v~~v~~sp~g-~lasgs~----D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~----d--- 295 (369)
.+.+..+. ...++-+.||||| +|+++.. -.++.|.+-.+++.-..|.|| ..++..++|+|. .
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH-~~p~evvrFnP~lfe~~~~n 284 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH-SAPVEVVRFNPKLFERNNKN 284 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC-CCceEEEEeChHHhcccccc
Confidence 55554321 3457889999999 8888643 347899998889999999999 899999999984 1
Q ss_pred -----CC----EEEEEECCCeEEEEECcCCceeEEEE---cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 296 -----SN----YIYVQGVDYEVFCGQWRESSKVFAFR---GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 296 -----~~----~l~s~s~D~~i~vwd~~~~~~~~~~~---g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
++ .+|+||.|++|-||.....++++... .++ ...+..++||-.|+.+|.||+|.+..++.++
T Consensus 285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S-I~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS-IVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc-eeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 11 68899999999999998777665542 222 3456668899999999999999999997653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-21 Score=172.29 Aligned_cols=261 Identities=17% Similarity=0.174 Sum_probs=187.5
Q ss_pred CCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCC
Q 017601 68 GKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVG 147 (369)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (369)
|++...+..+.+..+ ....+.||...|+++.|+++. ..+.+++.+-.+++|...... ......+|.
T Consensus 238 G~d~~av~~d~~s~q-~l~~~~Gh~kki~~v~~~~~~----~~v~~aSad~~i~vws~~~~s-----~~~~~~~h~---- 303 (506)
T KOG0289|consen 238 GEDKTAVLFDKPSNQ-ILATLKGHTKKITSVKFHKDL----DTVITASADEIIRVWSVPLSS-----EPTSSRPHE---- 303 (506)
T ss_pred CCCCceEEEecchhh-hhhhccCcceEEEEEEeccch----hheeecCCcceEEeecccccc-----Ccccccccc----
Confidence 444333333333332 333477999999999999984 677788888899999987552 122334443
Q ss_pred CCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeC-Cc--ceeeeccCCCCCCCCcEEEEEcCCeEEEEeC
Q 017601 148 EGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWY-PS--SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDL 224 (369)
Q Consensus 148 ~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~ 224 (369)
+.+.++..+|.++ +++++ +.|+++...|........ ...+ .. .+.... |-|||..|.+++.|+.|+|||+
T Consensus 304 -~~V~~ls~h~tge-YllsA-s~d~~w~Fsd~~~g~~lt-~vs~~~s~v~~ts~~---fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 304 -EPVTGLSLHPTGE-YLLSA-SNDGTWAFSDISSGSQLT-VVSDETSDVEYTSAA---FHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred -ccceeeeeccCCc-EEEEe-cCCceEEEEEccCCcEEE-EEeeccccceeEEee---EcCCceEEeccCCCceEEEEEc
Confidence 3456899999655 66777 899999999875322111 1111 11 122222 3367777777889999999999
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
+.+ ..+..|.+| .++|.+++|+.+| +||++.+|+.|++||+|+.+...++......+|.++.|.+ .|.+|+.+|
T Consensus 377 ks~---~~~a~Fpgh-t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g 451 (506)
T KOG0289|consen 377 KSQ---TNVAKFPGH-TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAG 451 (506)
T ss_pred CCc---cccccCCCC-CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeec
Confidence 988 677888887 8999999999999 9999999999999999998888887755346899999999 999999999
Q ss_pred CCCeEEEEECcC--CceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 304 VDYEVFCGQWRE--SSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 304 ~D~~i~vwd~~~--~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
.|=+|++++-.+ -.++..+..|+.. .++..-....+++++|.|..++++.+
T Consensus 452 ~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 888888887443 3445555444411 22333336789999999999988754
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-22 Score=185.91 Aligned_cols=239 Identities=12% Similarity=0.149 Sum_probs=180.3
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCee-EEEECCCCceeEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWS-GLCFSPSQWSMAA 165 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~p~~~~~~a 165 (369)
++-+|...|..++..+. ..+++++.+|++.+|+-... .-... ..+..+ ++-+. .+++-+.+...+.
T Consensus 9 ~l~gH~~DVr~v~~~~~-----~~i~s~sRd~t~~vw~~~~~-~~l~~--~~~~~~-----~g~i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-----VCIISGSRDGTVKVWAKKGK-QYLET--HAFEGP-----KGFIANSICYAESDKGRLV 75 (745)
T ss_pred EeccCccchheeEecCC-----eEEeecCCCCceeeeeccCc-ccccc--eecccC-----cceeeccceeccccCcceE
Confidence 35689999999998764 57899999999999986422 10110 011111 11122 2667665556688
Q ss_pred EEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
++ +.|.+|.+|......-......|...+..+.. +. +..++++|.|.++++|-.. ++...+.+| +..|+
T Consensus 76 ~g-~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~---~~-~~~~iSgSWD~TakvW~~~-----~l~~~l~gH-~asVW 144 (745)
T KOG0301|consen 76 VG-GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSI---GE-DGTLISGSWDSTAKVWRIG-----ELVYSLQGH-TASVW 144 (745)
T ss_pred ee-cccceEEEEecCCCCchhhhhccccceeeeec---CC-cCceEecccccceEEecch-----hhhcccCCc-chhee
Confidence 87 99999999987643322223335555555542 12 3469999999999999654 566667877 79999
Q ss_pred EEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC
Q 017601 246 AVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD 325 (369)
Q Consensus 246 ~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~ 325 (369)
++++-|++.++|||.|++||+|.- ++.+.+|.+| .+.|+++++-| + ..++|++.||.|++||+ +++++..+.||
T Consensus 145 Av~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gH-tD~VRgL~vl~-~-~~flScsNDg~Ir~w~~-~ge~l~~~~gh 218 (745)
T KOG0301|consen 145 AVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGH-TDCVRGLAVLD-D-SHFLSCSNDGSIRLWDL-DGEVLLEMHGH 218 (745)
T ss_pred eeeecCCCcEEeccCcceeeeccC--Cchhhhhccc-hhheeeeEEec-C-CCeEeecCCceEEEEec-cCceeeeeecc
Confidence 999999999999999999999974 7889999999 99999999987 4 46789999999999999 78899999999
Q ss_pred CCeeeeeE-cCCCCEEEEEeCCCcEEEEECC
Q 017601 326 SNWLGFSK-CSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 326 ~~~~~~~~-~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+++.-... ..++..|+|+++|++++||+..
T Consensus 219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 96543333 4578899999999999999876
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-22 Score=176.94 Aligned_cols=236 Identities=14% Similarity=0.098 Sum_probs=175.1
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+--+.|+++.|.+++ ..+.+.+.++++++|+++... ....+.+|.. -++++.|... ...++++
T Consensus 215 LaGs~g~it~~d~d~~~----~~~iAas~d~~~r~Wnvd~~r-----~~~TLsGHtd-----kVt~ak~~~~-~~~vVsg 279 (459)
T KOG0288|consen 215 LAGSLGNITSIDFDSDN----KHVIAASNDKNLRLWNVDSLR-----LRHTLSGHTD-----KVTAAKFKLS-HSRVVSG 279 (459)
T ss_pred hhccCCCcceeeecCCC----ceEEeecCCCceeeeeccchh-----hhhhhccccc-----ceeeehhhcc-ccceeec
Confidence 55677889999999874 444455678899999998541 1122333433 2457778763 3345555
Q ss_pred ecccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|.+|++||+.+. .+++.. ...++.+.+ ....++++-.|++|++||.|+. .+......+ +.|+
T Consensus 280 -s~DRtiK~WDl~k~~C~kt~l~---~S~cnDI~~-----~~~~~~SgH~DkkvRfwD~Rs~---~~~~sv~~g--g~vt 345 (459)
T KOG0288|consen 280 -SADRTIKLWDLQKAYCSKTVLP---GSQCNDIVC-----SISDVISGHFDKKVRFWDIRSA---DKTRSVPLG--GRVT 345 (459)
T ss_pred -cccchhhhhhhhhhheeccccc---cccccceEe-----cceeeeecccccceEEEeccCC---ceeeEeecC--ccee
Confidence 99999999998752 222211 112222221 0234555667999999999998 788888776 8999
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc---ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC---SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h---~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
++..++++ .|.+.+.|.++++.|+|+.+..+++..- .....+.+.||| ++.|+++||.||.|+||++.++++.+.
T Consensus 346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccCceEEEE
Confidence 99999999 8888899999999999998887776532 023489999999 999999999999999999999999988
Q ss_pred EEcCC-C--eeeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 322 FRGDS-N--WLGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 322 ~~g~~-~--~~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
+.... + ...+..++.|..|++++.++.+.+|.
T Consensus 425 l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 425 LSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 86532 2 34455577899999999999999993
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=163.76 Aligned_cols=240 Identities=18% Similarity=0.165 Sum_probs=178.9
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCc-eeEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQW-SMAA 165 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~~a 165 (369)
....|.+.|.++|.+. ..+||++.|-+|++||+....+ + ..+..| .+.++++.|.+... ..+.
T Consensus 38 ~~~aH~~sitavAVs~------~~~aSGssDetI~IYDm~k~~q-l----g~ll~H-----agsitaL~F~~~~S~shLl 101 (362)
T KOG0294|consen 38 AFSAHAGSITALAVSG------PYVASGSSDETIHIYDMRKRKQ-L----GILLSH-----AGSITALKFYPPLSKSHLL 101 (362)
T ss_pred cccccccceeEEEecc------eeEeccCCCCcEEEEeccchhh-h----cceecc-----ccceEEEEecCCcchhhee
Confidence 4568999999999964 5999999999999999986521 1 111112 34577899988432 3677
Q ss_pred EEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 166 VARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
+| +.||.|.+|+.+. .+.+++. |...++++..+| .+..-++++.|+.+++||+-++ +........ ..
T Consensus 102 S~-sdDG~i~iw~~~~W~~~~slK~--H~~~Vt~lsiHP---S~KLALsVg~D~~lr~WNLV~G---r~a~v~~L~--~~ 170 (362)
T KOG0294|consen 102 SG-SDDGHIIIWRVGSWELLKSLKA--HKGQVTDLSIHP---SGKLALSVGGDQVLRTWNLVRG---RVAFVLNLK--NK 170 (362)
T ss_pred ee-cCCCcEEEEEcCCeEEeeeecc--cccccceeEecC---CCceEEEEcCCceeeeehhhcC---ccceeeccC--Cc
Confidence 77 9999999999874 4444433 444588887666 3456778999999999999887 333333322 33
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
...+.|+|.| +++.++.++ |-+|.+.+......+... ..+.++.|- ++..|++|+.|+.|++||.....+...|
T Consensus 171 at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~--~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~ 245 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENP--KRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEF 245 (362)
T ss_pred ceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhcc--ccceeeeec--CCceEEEecCCceEEEeccCCCccceee
Confidence 4559999999 888887654 889999887776666543 456666664 6789999999999999999999999999
Q ss_pred EcCCC-eeeeeE--cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 323 RGDSN-WLGFSK--CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 323 ~g~~~-~~~~~~--~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+|.+ ...+.. .+++.+|+|+|.||.|+|||+....
T Consensus 246 ~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 246 LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 99983 233332 3478899999999999999998763
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=183.71 Aligned_cols=235 Identities=14% Similarity=0.097 Sum_probs=178.6
Q ss_pred cccCCccceeeE-EEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 86 LNRCPHRSEVQS-IALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 86 ~~~~~H~~~V~~-l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
....+|.+-|.. ++|.+- ..-++..+..|.++.+|..... ...+.+.+|.. .+++++... ...+
T Consensus 51 ~~~~~~~g~i~~~i~y~e~---~~~~l~~g~~D~~i~v~~~~~~-----~P~~~LkgH~s-----nVC~ls~~~--~~~~ 115 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAES---DKGRLVVGGMDTTIIVFKLSQA-----EPLYTLKGHKS-----NVCSLSIGE--DGTL 115 (745)
T ss_pred eecccCcceeeccceeccc---cCcceEeecccceEEEEecCCC-----Cchhhhhcccc-----ceeeeecCC--cCce
Confidence 335678888887 898762 1357888889999999998755 22345555543 355666544 3346
Q ss_pred EEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 165 AVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+++ |+|.++++|-.+.....+.. |+..+-.+...+ .+.+++++.|.+|++|.- + +.+++|.+| .+.|
T Consensus 116 iSg-SWD~TakvW~~~~l~~~l~g--H~asVWAv~~l~----e~~~vTgsaDKtIklWk~--~---~~l~tf~gH-tD~V 182 (745)
T KOG0301|consen 116 ISG-SWDSTAKVWRIGELVYSLQG--HTASVWAVASLP----ENTYVTGSADKTIKLWKG--G---TLLKTFSGH-TDCV 182 (745)
T ss_pred Eec-ccccceEEecchhhhcccCC--cchheeeeeecC----CCcEEeccCcceeeeccC--C---chhhhhccc-hhhe
Confidence 776 99999999988876665433 444443333322 359999999999999965 3 788899988 8999
Q ss_pred EEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 245 YAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 245 ~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
..+++-+++.+++++.||.|++||+ +++++.++.+| +.-|++++..+ +++.++|+|.|+++++|+.. ++.+.+.-
T Consensus 183 RgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~gh-tn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~l 257 (745)
T KOG0301|consen 183 RGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGH-TNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITL 257 (745)
T ss_pred eeeEEecCCCeEeecCCceEEEEec-cCceeeeeecc-ceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEec
Confidence 9999999989999999999999998 79999999999 99999999777 88999999999999999987 66666643
Q ss_pred C--CCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 325 D--SNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 325 ~--~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
. +-| ......+ .-|++|+.||.||||...
T Consensus 258 PttsiW-sa~~L~N-gDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 258 PTTSIW-SAKVLLN-GDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CccceE-EEEEeeC-CCEEEeccCceEEEEEec
Confidence 3 322 2222224 446788899999999876
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-23 Score=180.88 Aligned_cols=159 Identities=17% Similarity=0.195 Sum_probs=135.1
Q ss_pred CCCCCCCcEEEEEcCCeEEEEeCCcccCCceee-----eeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceee
Q 017601 202 SPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLH-----RICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL 275 (369)
Q Consensus 202 ~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~-----~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~ 275 (369)
.|+||+++|++++-||.|.+||..+++-.+-++ .+... ..+|.|++||.|. .+|+|+.||.|++|-+++|.++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMm-d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl 298 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMM-DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL 298 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeec-ccceEEEeecccHHHhhccCcCCcEEEEEEecchHH
Confidence 356789999999999999999998873222111 11111 4789999999999 9999999999999999999999
Q ss_pred eecc-ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeee-EcCCCCEEEEEeCCCcEEEEE
Q 017601 276 SRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFS-KCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 276 ~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~-~~~d~~~l~sgs~dg~I~iWd 353 (369)
+.|. .| ...|+++.||. |+..++|+|.|.++|+--++.++++..|+||+.+.+-. ..+||..++++|.||+|++|+
T Consensus 299 RrFdrAH-tkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~ 376 (508)
T KOG0275|consen 299 RRFDRAH-TKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWH 376 (508)
T ss_pred HHhhhhh-ccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEec
Confidence 9998 77 99999999999 99999999999999999999999999999999554322 256999999999999999999
Q ss_pred CCCCcchhhhc
Q 017601 354 VVAKENEISAL 364 (369)
Q Consensus 354 ~~~~~~~~~~l 364 (369)
.++.++ +.++
T Consensus 377 ~KtteC-~~Tf 386 (508)
T KOG0275|consen 377 GKTTEC-LSTF 386 (508)
T ss_pred Ccchhh-hhhc
Confidence 999874 3444
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-22 Score=169.00 Aligned_cols=204 Identities=13% Similarity=0.042 Sum_probs=161.3
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcce------------EEE---EeeeCCcceeeeccCCCCCCCCcEEEE
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL------------RTL---RTLWYPSSLNFVQNLSPVNGGPNMLAV 213 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~------------~~~---~~~~~~~~v~~~~~~~~~~~~~~lla~ 213 (369)
+++..+.+.+....+++++ +.|+.|.+||+.... ..+ +...|...+....|.|++ .+.|.++
T Consensus 44 GsvNsL~id~tegrymlSG-gadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D--tGmFtss 120 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSG-GADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID--TGMFTSS 120 (397)
T ss_pred CccceeeeccccceEEeec-CCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec--Cceeecc
Confidence 4466788888777777777 899999999974211 101 111244567777777754 4788889
Q ss_pred EcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC----cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEE
Q 017601 214 TEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG----NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGL 289 (369)
Q Consensus 214 s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g----~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l 289 (369)
+-|.++++||..+. +....|+-+ +.||+-++||-. ++|+|..|-.|++-|+.+|...+++.|| .+.|.+|
T Consensus 121 SFDhtlKVWDtnTl---Q~a~~F~me--~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH-r~~vlaV 194 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTL---QEAVDFKME--GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH-RDGVLAV 194 (397)
T ss_pred cccceEEEeecccc---eeeEEeecC--ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc-cCceEEE
Confidence 99999999999988 777778877 899999999975 7888999999999999999999999999 9999999
Q ss_pred EEcCCCCCEEEEEECCCeEEEEECcCC-ceeEEEEcCC---------------CeeeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 290 SFSSIDSNYIYVQGVDYEVFCGQWRES-SKVFAFRGDS---------------NWLGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 290 ~~sp~d~~~l~s~s~D~~i~vwd~~~~-~~~~~~~g~~---------------~~~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
.|||...-.|++||.|+.||+||++.. .|...+..|. ...+.....|+.++++.+.|..+++|+
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 999966666899999999999999874 5555554443 011222234899999999999999999
Q ss_pred CCCCcchh
Q 017601 354 VVAKENEI 361 (369)
Q Consensus 354 ~~~~~~~~ 361 (369)
...|++.+
T Consensus 275 ~~~G~ntl 282 (397)
T KOG4283|consen 275 MESGRNTL 282 (397)
T ss_pred cccCcccc
Confidence 99998644
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-21 Score=171.93 Aligned_cols=241 Identities=10% Similarity=0.080 Sum_probs=181.7
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
-.|.++...|. ...+.++..+.++.++|..... ....+.+|.. -++.+.|+|. ...++++ +.|.
T Consensus 220 pgi~ald~~~s----~~~ilTGG~d~~av~~d~~s~q-----~l~~~~Gh~k-----ki~~v~~~~~-~~~v~~a-Sad~ 283 (506)
T KOG0289|consen 220 PGITALDIIPS----SSKILTGGEDKTAVLFDKPSNQ-----ILATLKGHTK-----KITSVKFHKD-LDTVITA-SADE 283 (506)
T ss_pred CCeeEEeecCC----CCcceecCCCCceEEEecchhh-----hhhhccCcce-----EEEEEEeccc-hhheeec-CCcc
Confidence 45677777664 2577888888889998877441 1112233322 2557999994 4456666 8999
Q ss_pred eEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc-CCCcEEEEEECC
Q 017601 173 SIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS-VGDILYAVCSSS 251 (369)
Q Consensus 173 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~-~~~~v~~v~~sp 251 (369)
.|++|..+..........|...+.++..++ .+.+|++++.|++..+.|++++ .++...... ..-.+++.+|+|
T Consensus 284 ~i~vws~~~~s~~~~~~~h~~~V~~ls~h~---tgeYllsAs~d~~w~Fsd~~~g---~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 284 IIRVWSVPLSSEPTSSRPHEEPVTGLSLHP---TGEYLLSASNDGTWAFSDISSG---SQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred eEEeeccccccCccccccccccceeeeecc---CCcEEEEecCCceEEEEEccCC---cEEEEEeeccccceeEEeeEcC
Confidence 999998764332222333556677777554 4679999999999999999998 666555442 135689999999
Q ss_pred CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCC--e
Q 017601 252 TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSN--W 328 (369)
Q Consensus 252 ~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~--~ 328 (369)
|| .|++|..|+.|++||+.++..+..|.+| .++|..++|+. +|.+|++++.|+.|++||++..+...+|.-... .
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-t~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v 435 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-TGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEV 435 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCCCC-CCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccc
Confidence 99 9999999999999999999999999999 99999999999 999999999999999999999887777755442 1
Q ss_pred eeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 329 LGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 329 ~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
..+..-..|.+|+.++.|=.|++++-.++
T Consensus 436 ~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred eeEEEcCCCCeEEeecceeEEEEEecccc
Confidence 22333347899999988888877774443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-22 Score=201.17 Aligned_cols=258 Identities=17% Similarity=0.190 Sum_probs=195.5
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.-...-+.|+|.+-+....-+||.+-.+|+|.+|+...-.. .....+-.+ ...+++.+.+|.|++..++++|+| +
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---~~~~~~la~-~~~h~G~V~gLDfN~~q~nlLASG-a 136 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---NASEEVLAT-KSKHTGPVLGLDFNPFQGNLLASG-A 136 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhhcc---CcchHHHhh-hcccCCceeeeeccccCCceeecc-C
Confidence 33466789999987543345899999999999999875311 111111111 122345678999999888899998 8
Q ss_pred ccceEEEEeCCcceEEEEee--eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC-CCcEEE
Q 017601 170 FSKSIDVYDQDIHLRTLRTL--WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV-GDILYA 246 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~-~~~v~~ 246 (369)
.|+.|.|||+.+....+... ..+..|.++.|.. .....|++++.+|++.|||+|.. +++-.+..+. ...+..
T Consensus 137 ~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNr--kvqhILAS~s~sg~~~iWDlr~~---~pii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 137 DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNR--KVSHILASGSPSGRAVIWDLRKK---KPIIKLSDTPGRMHCSV 211 (1049)
T ss_pred CCCcEEEeccCCcCCCCCCCCCCCcccceEeccch--hhhHHhhccCCCCCceeccccCC---CcccccccCCCccceee
Confidence 99999999998755554431 2345566666532 11234556778899999999987 6666665441 245889
Q ss_pred EEECCCC--cEEEEeCCC---cEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeE
Q 017601 247 VCSSSTG--NIAVAGADR---TVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVF 320 (369)
Q Consensus 247 v~~sp~g--~lasgs~D~---~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~ 320 (369)
++|+|++ .|++++.|. .|.+||+|. ..+++++.+| +..|.++.|++.|..+|+|++.|++|.+|+.++++.+.
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H-~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH-QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc-ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 9999999 788877765 689999998 6788899999 99999999999888999999999999999999999999
Q ss_pred EEEcCCCee-eeeEcC-CCCEEEEEeCCCcEEEEECCCCc
Q 017601 321 AFRGDSNWL-GFSKCS-NRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 321 ~~~g~~~~~-~~~~~~-d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+....+|. .+..|+ +..+++..+-||.|.|+.+....
T Consensus 291 ~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 291 ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 997766665 344477 77799999999999999987764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=176.91 Aligned_cols=292 Identities=15% Similarity=0.125 Sum_probs=184.7
Q ss_pred EEEEEeCCeEE-EEEEeCCchhh-hcCCCccccccCcccccccccc---cCC-ccceeeEEEEeecCCCCceEEEEEecC
Q 017601 44 FVYIASGCHLY-KLQVMMDDWFV-SEGKDSLLIPEQTPVMDSSMLN---RCP-HRSEVQSIALAETDSSGYMVLGSVDSY 117 (369)
Q Consensus 44 ~~~~as~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~-H~~~V~~l~~s~~~~~~~~~las~d~~ 117 (369)
.+.+-.|.++. ++++.+++.-+ ..+.+....-++.+-++.+.-. +.+ -...|++++|++.+ +..++++ ..
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg--~~iLvvs--g~ 235 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG--DQILVVS--GS 235 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC--CeEEEEe--cC
Confidence 34555555543 46666655443 5455655555555444322111 222 34679999999974 2333344 34
Q ss_pred CcEEEEEecCCC--CCCccccccc-----cCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceE---EEE
Q 017601 118 GHLIVSKLDTSG--KDVDRLTYSV-----LPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLR---TLR 187 (369)
Q Consensus 118 g~v~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~---~~~ 187 (369)
....++|.+... +-+.+..|.. .+|. ..+++.+|+|.....+++| ++|++++|||+..... .+.
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHi-----a~lt~g~whP~~k~~FlT~-s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHI-----AELTCGCWHPDNKEEFLTC-SYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCce-----eeeeccccccCcccceEEe-cCCCcEEEEecCCchhheeEEe
Confidence 456666655321 0011112221 1221 1345789999999999999 9999999999874433 333
Q ss_pred eee-CC--cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee--ccCCCcEEEEEECCCC-cEEEEeCC
Q 017601 188 TLW-YP--SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC--GSVGDILYAVCSSSTG-NIAVAGAD 261 (369)
Q Consensus 188 ~~~-~~--~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~--~~~~~~v~~v~~sp~g-~lasgs~D 261 (369)
+.. .. ..+..+. +++|+..++++..||.|++||.+... ..+...+. |..+..|+||+||++| +|++-+.|
T Consensus 310 ~k~~~g~Rv~~tsC~---~nrdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCA---WNRDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD 385 (641)
T ss_pred eccCCCcccCceeee---cCCCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence 221 11 2223333 34677788888899999999986431 12222222 2214589999999999 99999999
Q ss_pred CcEEEEeCCC-ceeeeeccccc-cCceEEEEEcCCCCCEEEEEE------CCCeEEEEECcCCceeEEEEcCCCeeeeeE
Q 017601 262 RTVTIYDPRR-WSALSRWVHCS-KYEITGLSFSSIDSNYIYVQG------VDYEVFCGQWRESSKVFAFRGDSNWLGFSK 333 (369)
Q Consensus 262 ~~v~vwD~~~-~~~~~~~~~h~-~~~v~~l~~sp~d~~~l~s~s------~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~ 333 (369)
++++|||+|+ .+++..+.+-. ..+-+.++||| +.++|++|. .-+++.++|..+-+.++.+.-.. ..+..
T Consensus 386 ~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~--aSvv~ 462 (641)
T KOG0772|consen 386 DTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST--ASVVR 462 (641)
T ss_pred CceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCC--ceEEE
Confidence 9999999998 56777666531 35678999999 999999875 34679999998877776664333 33333
Q ss_pred cC---CCCEEEEEeCCCcEEEE
Q 017601 334 CS---NRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 334 ~~---d~~~l~sgs~dg~I~iW 352 (369)
|. -=+.|+.|+.||+++++
T Consensus 463 ~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 463 CLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EeecchhhheeeecCCCceEEE
Confidence 32 33458888899999987
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-21 Score=169.35 Aligned_cols=210 Identities=18% Similarity=0.140 Sum_probs=158.9
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 163 (369)
..++..+|+++=+.|+|||-. .-+|+++|+...|++|...++.-..+... +..|.. .+-+|+|||...++
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~~---~g~LlsGDc~~~I~lw~~~~g~W~vd~~P--f~gH~~-----SVEDLqWSptE~~v 272 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPIK---TGRLLSGDCVKGIHLWEPSTGSWKVDQRP--FTGHTK-----SVEDLQWSPTEDGV 272 (440)
T ss_pred ceEEecccCccceeeeccccc---ccccccCccccceEeeeeccCceeecCcc--cccccc-----chhhhccCCccCce
Confidence 445567999999999999953 56899999999999999987532222211 122332 34479999999999
Q ss_pred EEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC
Q 017601 164 AAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~ 241 (369)
||+| |.|++|+|||+.. ....+....|...++.+.|.. .-..|+++++||+++|||+|+-+.++++..|+.| .
T Consensus 273 faSc-S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr---~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-k 347 (440)
T KOG0302|consen 273 FASC-SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR---REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH-K 347 (440)
T ss_pred EEee-ecCceEEEEEecCCCccceeEeeccCCceeeEEccC---CcceeeecCCCceEEEEEhhhccCCCcceeEEec-c
Confidence 9999 9999999999852 233344455777888888643 2346777889999999999987666889999977 7
Q ss_pred CcEEEEEECCCC--cEEEEeCCCcEEEEeCCCce--------eee--------ecccc-ccCceEEEEEcCCCCCEEEEE
Q 017601 242 DILYAVCSSSTG--NIAVAGADRTVTIYDPRRWS--------ALS--------RWVHC-SKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 242 ~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~--------~~~--------~~~~h-~~~~v~~l~~sp~d~~~l~s~ 302 (369)
.+|++|.|+|.. .|++++.|..|.+||+.... ... -+.-| -+..+-.|.|+++.+.+|+|.
T Consensus 348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsT 427 (440)
T KOG0302|consen 348 APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVST 427 (440)
T ss_pred CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEe
Confidence 999999999987 89999999999999985311 111 11223 024688899999889999999
Q ss_pred ECCCeE
Q 017601 303 GVDYEV 308 (369)
Q Consensus 303 s~D~~i 308 (369)
+.||.-
T Consensus 428 a~dGfn 433 (440)
T KOG0302|consen 428 AIDGFN 433 (440)
T ss_pred ccccee
Confidence 999843
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-21 Score=173.49 Aligned_cols=278 Identities=14% Similarity=0.156 Sum_probs=192.5
Q ss_pred ccceeeeecCCccccCCCCCcc-----ccceeEEEecCCCceEEEEEEeCCe-----------EEEEEEeCCchhhhcCC
Q 017601 6 AKSLRKAEVPLSLIENPSPGNI-----QCTRLALHVNEDGCSCFVYIASGCH-----------LYKLQVMMDDWFVSEGK 69 (369)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~~~~as~~~-----------~~~~~~~~~~~~~~~~~ 69 (369)
-|..|.-+.||.+.+.-+...+ +.+.+|+ +.+.++-+|.+.+.. ||.+.+.-++.++.+|.
T Consensus 11 ~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aV---t~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAV---TSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred chhhhhhcccccccccCcceeEecCCCCCCceEE---ecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccC
Confidence 3555666666666443211111 1223333 233444455554433 35566666788887766
Q ss_pred -CccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCC
Q 017601 70 -DSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGE 148 (369)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (369)
+|....++ ...+.....+..|+..|..+.|+|+. ...++++|+++.+.+||+.+.. . .+.+..|..-
T Consensus 88 ~sG~V~vfD-~k~r~iLR~~~ah~apv~~~~f~~~d---~t~l~s~sDd~v~k~~d~s~a~----v-~~~l~~htDY--- 155 (487)
T KOG0310|consen 88 ESGHVKVFD-MKSRVILRQLYAHQAPVHVTKFSPQD---NTMLVSGSDDKVVKYWDLSTAY----V-QAELSGHTDY--- 155 (487)
T ss_pred CcCcEEEec-cccHHHHHHHhhccCceeEEEecccC---CeEEEecCCCceEEEEEcCCcE----E-EEEecCCcce---
Confidence 45555555 22222333467999999999999984 6899999999999999998663 1 2334444433
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
+.+.+|+|.++.++++| |+|+.|++||..........+.|...+..+-..| ++.+++.+..+.|++||+-++.
T Consensus 156 --VR~g~~~~~~~hivvtG-sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp----sgs~iasAgGn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 156 --VRCGDISPANDHIVVTG-SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP----SGSLIASAGGNSVKVWDLTTGG 228 (487)
T ss_pred --eEeeccccCCCeEEEec-CCCceEEEEEeccCCceeEEecCCCceeeEEEcC----CCCEEEEcCCCeEEEEEecCCc
Confidence 45899999888888887 9999999999865433333444444343333222 3455555566789999998762
Q ss_pred CCceeeeee-ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCC
Q 017601 229 NGGCLHRIC-GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY 306 (369)
Q Consensus 229 ~~~~~~~~~-~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~ 306 (369)
+.+..+. |+ ..|+|+++..++ .|++||-|+.|++||+.+.+.++.|.- .++|.+++.+| +++.++.|..+|
T Consensus 229 --qll~~~~~H~--KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~--~~pvLsiavs~-dd~t~viGmsnG 301 (487)
T KOG0310|consen 229 --QLLTSMFNHN--KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY--PGPVLSIAVSP-DDQTVVIGMSNG 301 (487)
T ss_pred --eehhhhhccc--ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec--ccceeeEEecC-CCceEEEecccc
Confidence 3444433 55 999999999999 999999999999999999999999885 48899999999 999999999999
Q ss_pred eEEEEE
Q 017601 307 EVFCGQ 312 (369)
Q Consensus 307 ~i~vwd 312 (369)
.+.+=+
T Consensus 302 lv~~rr 307 (487)
T KOG0310|consen 302 LVSIRR 307 (487)
T ss_pred eeeeeh
Confidence 887653
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-22 Score=187.62 Aligned_cols=203 Identities=15% Similarity=0.087 Sum_probs=155.0
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEE--EEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRT--LRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN 229 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~ 229 (369)
.|.|+....++||++ +..|.|.+||+.+..+. +..+ .|...++.+.++++.| ..|+++|.||+|++||+|..
T Consensus 92 DVkW~~~~~NlIAT~-s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~-- 166 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATC-STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSK-- 166 (839)
T ss_pred hcccccchhhhheee-cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecc--
Confidence 588887788899999 99999999999864332 2122 2555666666665544 68999999999999999988
Q ss_pred CceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCC
Q 017601 230 GGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY 306 (369)
Q Consensus 230 ~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~ 306 (369)
+...++... ...|..|.|+|.- .++++.+.|.+++||+|. .++...+..| .++|.++.|+| ++.+|||||.|+
T Consensus 167 -~S~~t~~~n-SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH-~GpV~c~nwhP-nr~~lATGGRDK 242 (839)
T KOG0269|consen 167 -KSKSTFRSN-SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH-NGPVLCLNWHP-NREWLATGGRDK 242 (839)
T ss_pred -ccccccccc-chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc-cCceEEEeecC-CCceeeecCCCc
Confidence 566666654 5889999999976 999999999999999998 4667889999 99999999999 999999999999
Q ss_pred eEEEEECcCCceeEEEEcCC--CeeeeeEcC-CCCEEEEEeC--CCcEEEEECCCCcchhhhc
Q 017601 307 EVFCGQWRESSKVFAFRGDS--NWLGFSKCS-NRDVLGGWSD--SGSIFVADVVAKENEISAL 364 (369)
Q Consensus 307 ~i~vwd~~~~~~~~~~~g~~--~~~~~~~~~-d~~~l~sgs~--dg~I~iWd~~~~~~~~~~l 364 (369)
.|+|||+..++....+.-++ ....+..-| ....||+++. |-.|+|||++..--+...+
T Consensus 243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~ 305 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF 305 (839)
T ss_pred cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee
Confidence 99999998755433333222 111122233 3466887775 7899999998764433333
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-21 Score=164.70 Aligned_cols=245 Identities=15% Similarity=0.175 Sum_probs=185.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|++.|+.++-... ..++++++.+-+..+|.+..+. +.....+|. +.+.+++|++ ...+++++
T Consensus 144 ~~GHkDGiW~Vaa~~t----qpi~gtASADhTA~iWs~Esg~-----CL~~Y~GH~-----GSVNsikfh~-s~~L~lTa 208 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADST----QPICGTASADHTARIWSLESGA-----CLATYTGHT-----GSVNSIKFHN-SGLLLLTA 208 (481)
T ss_pred hcccccceeeehhhcC----CcceeecccccceeEEeecccc-----ceeeecccc-----cceeeEEecc-ccceEEEc
Confidence 5799999999987553 4589999999999999998762 222233443 3466899999 44566776
Q ss_pred ecccceEEEEe------CCcce-----------------------------EEE-----EeeeCCcceeeeccCCCCCCC
Q 017601 168 RSFSKSIDVYD------QDIHL-----------------------------RTL-----RTLWYPSSLNFVQNLSPVNGG 207 (369)
Q Consensus 168 ~s~d~~i~lwd------~~~~~-----------------------------~~~-----~~~~~~~~v~~~~~~~~~~~~ 207 (369)
|.|++-.||. +.+.. .++ +...|...+....|.. .+
T Consensus 209 -SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~---gg 284 (481)
T KOG0300|consen 209 -SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA---GG 284 (481)
T ss_pred -cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc---Cc
Confidence 8999999995 11100 001 1111223333334433 36
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCc
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYE 285 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~ 285 (369)
..+++++.|.+..+||+.++ ..++.+.+| ....+-++-+|.. ++++.+.|.+.++||.|. -..+..|+|| .+.
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtg---e~v~~LtGH-d~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH-tdt 359 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETG---EVVNILTGH-DSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH-TDT 359 (481)
T ss_pred ceeeeeeccccceeeeeccC---ceeccccCc-chhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccc-ccc
Confidence 78999999999999999999 788888887 6788889999999 999999999999999985 3456789999 999
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|+++.|.- + ..++|+|.|.+|++||+++ ...+.+++-.+....+..+..+.+|+.--+++.|++||+...+
T Consensus 360 VTS~vF~~-d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 360 VTSVVFNT-D-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred eeEEEEec-C-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 99999987 4 5688999999999999987 4577888776644444445567788888888999999996543
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=150.40 Aligned_cols=254 Identities=15% Similarity=0.122 Sum_probs=180.1
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccC-----CCCCCCCCCeeEEEECCCCce
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLP-----QDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~p~~~~ 162 (369)
.......|.+++|.|.+ .+-|.++...++++-.+..-......+....+| ....+..+.+.+.+|+| .+.
T Consensus 28 ~l~dsqairav~fhp~g----~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~ge 102 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAG----GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGE 102 (350)
T ss_pred EecchhheeeEEecCCC----ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccC
Confidence 34456789999999974 577777777788876553221111111111122 12345567788999999 556
Q ss_pred eEEEEecccceEEEEeCCc--ceE---EEEeeeC---CcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCce
Q 017601 163 MAAVARSFSKSIDVYDQDI--HLR---TLRTLWY---PSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~--~~~---~~~~~~~---~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~ 232 (369)
++|++ |.|++|++.-.+. ... .+...-| ...+.|+... ..++.+++.+ .|..|.+=|-.++ +.
T Consensus 103 liatg-sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~---~s~~~il~s~gagdc~iy~tdc~~g---~~ 175 (350)
T KOG0641|consen 103 LIATG-SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDP---ESGGAILASAGAGDCKIYITDCGRG---QG 175 (350)
T ss_pred eEEec-CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCC---CcCceEEEecCCCcceEEEeecCCC---Cc
Confidence 88888 9999999984421 111 1111112 2345565532 2344555543 4667777777777 88
Q ss_pred eeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc------ccCceEEEEEcCCCCCEEEEEECC
Q 017601 233 LHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC------SKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h------~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
.+.+.+| .+.|.++ ++-+| .+++|+.|++|++||+|-..++.++... ....|.+++..| .|++|++|-.|
T Consensus 176 ~~a~sgh-tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~d 252 (350)
T KOG0641|consen 176 FHALSGH-TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHAD 252 (350)
T ss_pred ceeecCC-cccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCC
Confidence 8889888 7888887 55578 9999999999999999998888876521 125799999999 99999999999
Q ss_pred CeEEEEECcCCceeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 306 YEVFCGQWRESSKVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
....++|++.++.++.|..|+. ...+..+|...++.++|.|..|++=|+..
T Consensus 253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 9999999999999999988872 12334477888999999999999999853
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-20 Score=156.72 Aligned_cols=246 Identities=15% Similarity=0.108 Sum_probs=176.1
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+-+.+|+..++-|.|..++ .+|-++.++-..-+|-...+.. .-...+|.. .+-+++.+. +...++
T Consensus 4 i~l~GHERplTqiKyN~eG----DLlFscaKD~~~~vw~s~nGer-----lGty~GHtG-----avW~~Did~-~s~~li 68 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREG----DLLFSCAKDSTPTVWYSLNGER-----LGTYDGHTG-----AVWCCDIDW-DSKHLI 68 (327)
T ss_pred cccccCccccceEEecCCC----cEEEEecCCCCceEEEecCCce-----eeeecCCCc-----eEEEEEecC-Ccceee
Confidence 4578999999999999874 6888887777777776643310 111223322 233577777 445677
Q ss_pred EEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-----CCeEEEEeCCccc----CCceee
Q 017601 166 VARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-----GCQLTIWDLRMKE----NGGCLH 234 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-----d~~v~iwD~~~~~----~~~~~~ 234 (369)
++ +.|.+++|||+. +.+..+........+.|. .+++.++++.+ .+.|.++|++..+ ...+..
T Consensus 69 TG-SAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~------~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 69 TG-SADQTAKLWDVETGKQLATWKTNSPVKRVDFS------FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred ec-cccceeEEEEcCCCcEEEEeecCCeeEEEeec------cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 77 999999999985 455444433222333333 35666666664 3689999999432 235566
Q ss_pred eeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCce-eeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 235 RICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS-ALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 235 ~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~-~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
.+..+ ...++.+-|+|-+ .|++|.+||.|..||+++++ .+..-..| ...|+.+.|+| |..+++++|.|.+-++||
T Consensus 142 kI~t~-~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h-~~~Ind~q~s~-d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 142 KIPTP-DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH-SSKINDLQFSR-DRTYFITGSKDTTAKLVD 218 (327)
T ss_pred EecCC-ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh-ccccccccccC-CcceEEecccCccceeee
Confidence 66555 5889999999999 99999999999999999974 45566788 88999999999 999999999999999999
Q ss_pred CcCCce-------------------------------------------------------eEEEEcCC-CeeeeeEcCC
Q 017601 313 WRESSK-------------------------------------------------------VFAFRGDS-NWLGFSKCSN 336 (369)
Q Consensus 313 ~~~~~~-------------------------------------------------------~~~~~g~~-~~~~~~~~~d 336 (369)
..+-++ +...+||- ....+...|+
T Consensus 219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence 876322 22233332 1123344569
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 017601 337 RDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 337 ~~~l~sgs~dg~I~iWd~~~ 356 (369)
|...+||++||.|++.-+..
T Consensus 299 GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CcccccCCCCceEEEEEecc
Confidence 99999999999999986643
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=161.31 Aligned_cols=250 Identities=12% Similarity=0.095 Sum_probs=174.8
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEE-CCCCceeEEEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCF-SPSQWSMAAVA 167 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~p~~~~~~a~~ 167 (369)
..|++-|.++...-- +++||++++|+.|+||.+..... ......+.+|..+ +.-++| +|.-+.+||+|
T Consensus 8 t~H~D~IHda~lDyy----gkrlATcsSD~tVkIf~v~~n~~--s~ll~~L~Gh~GP-----Vwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYY----GKRLATCSSDGTVKIFEVRNNGQ--SKLLAELTGHSGP-----VWKVAWAHPKFGTILASC 76 (299)
T ss_pred hhhhhhhhHhhhhhh----cceeeeecCCccEEEEEEcCCCC--ceeeeEecCCCCC-----eeEEeecccccCcEeeEe
Confidence 468888887776443 47999999999999999986632 0111234444433 335666 67677889998
Q ss_pred ecccceEEEEeCCcce--EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee-eccCCCcE
Q 017601 168 RSFSKSIDVYDQDIHL--RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI-CGSVGDIL 244 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~-~~~~~~~v 244 (369)
++|+.|-||.-.... +......|..+++.+.+.|..- +-.|+.++.||.|.|.+.+.. .+-....+ ..| .-.|
T Consensus 77 -sYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey-gl~LacasSDG~vsvl~~~~~-g~w~t~ki~~aH-~~Gv 152 (299)
T KOG1332|consen 77 -SYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY-GLLLACASSDGKVSVLTYDSS-GGWTTSKIVFAH-EIGV 152 (299)
T ss_pred -ecCceEEEEecCCCchhhhhhhhhhcccceeeccccccc-ceEEEEeeCCCcEEEEEEcCC-CCccchhhhhcc-cccc
Confidence 999999999764321 1111122556677777665433 334555778999999998865 11222222 223 4789
Q ss_pred EEEEECCCC---------------cEEEEeCCCcEEEEeCCC--ceeeeeccccccCceEEEEEcCCC---CCEEEEEEC
Q 017601 245 YAVCSSSTG---------------NIAVAGADRTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSID---SNYIYVQGV 304 (369)
Q Consensus 245 ~~v~~sp~g---------------~lasgs~D~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d---~~~l~s~s~ 304 (369)
++++|.|-. +|++|+.|+.|+||+..+ +....+|.+| .+-|+.++|.|.. ..+|||+|.
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H-~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH-KDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc-chhhhhhhhccccCCCceeeEEecC
Confidence 999998862 499999999999999877 4556679999 9999999999943 257999999
Q ss_pred CCeEEEEECcC------CceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 305 DYEVFCGQWRE------SSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 305 D~~i~vwd~~~------~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
|+++.||-.+. ..++..|.... -.+..+..|.+|+.++.|+.|.+|.-..
T Consensus 232 Dg~viIwt~~~e~e~wk~tll~~f~~~~--w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 232 DGTVIIWTKDEEYEPWKKTLLEEFPDVV--WRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCcEEEEEecCccCcccccccccCCcce--EEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 99999998764 23344442222 3344466899999999999999996543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=169.39 Aligned_cols=247 Identities=13% Similarity=0.020 Sum_probs=175.7
Q ss_pred CceEEEEEecCCcEEEEEecCCCCCCccc-------cccccCCCCCCCCCCee----EEEECCCCceeEEEEecccceEE
Q 017601 107 GYMVLGSVDSYGHLIVSKLDTSGKDVDRL-------TYSVLPQDCGVGEGSWS----GLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 107 ~~~~las~d~~g~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~----~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
.+.++|-+..+-.|.|||++-...-.+.. ++............+++ .++|+..-.++||++ |.|++|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSg-saD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASG-SADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEec-CCCceEE
Confidence 45677777777799999987542211110 00000000111112233 677887777788888 9999999
Q ss_pred EEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC
Q 017601 176 VYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG 253 (369)
Q Consensus 176 lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g 253 (369)
+||+. ++.+++. .+...+..+.++++.| ..||+++.|++|.|.|.|... ..-..++-. +.|-.++|.|..
T Consensus 270 lWD~~~g~p~~s~~--~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~--~s~~~wk~~--g~VEkv~w~~~s 341 (463)
T KOG0270|consen 270 LWDVDTGKPKSSIT--HHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPS--NSGKEWKFD--GEVEKVAWDPHS 341 (463)
T ss_pred EEEcCCCCcceehh--hcCCceeEEEecCCCc--eEEEeccccceEEeeeccCcc--ccCceEEec--cceEEEEecCCC
Confidence 99986 4444443 3456677777777655 689999999999999999642 222334444 779999999998
Q ss_pred --cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC----
Q 017601 254 --NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS---- 326 (369)
Q Consensus 254 --~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~---- 326 (369)
.++++..||+|+-+|+|+ ++++.+++.| .++|.+|+++++.+.+++++|.|+.|++|++......... .|.
T Consensus 342 e~~f~~~tddG~v~~~D~R~~~~~vwt~~AH-d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~-~~~~~~~ 419 (463)
T KOG0270|consen 342 ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH-DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK-EHSFKLG 419 (463)
T ss_pred ceeEEEecCCceEEeeecCCCCCceeEEEec-cCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc-ccccccc
Confidence 888899999999999999 5999999999 9999999999988999999999999999999753321111 121
Q ss_pred CeeeeeEcC-CCCEEEEEeCCCcEEEEECCCCcchhhhc
Q 017601 327 NWLGFSKCS-NRDVLGGWSDSGSIFVADVVAKENEISAL 364 (369)
Q Consensus 327 ~~~~~~~~~-d~~~l~sgs~dg~I~iWd~~~~~~~~~~l 364 (369)
+..++..++ ..-+++.|+..+.++|||+.+....+.++
T Consensus 420 rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 420 RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred ceeecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 112333344 45578888888899999999887766554
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=155.94 Aligned_cols=255 Identities=15% Similarity=0.120 Sum_probs=171.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEec----CC---cEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDS----YG---HLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ 160 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~----~g---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 160 (369)
+..|.+||+.|+-+|-. ..+++++-. .| ..-+|.+..............-.+.....-+.+.++-|.|++
T Consensus 59 f~h~agEvw~las~P~d---~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFD---QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhcCCcceehhhcCCCC---CceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 45788999999999963 567777532 11 346788765432211111111111111112246789999955
Q ss_pred ceeEEEEecccceEEEEeCCcceE---EEEeee---CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceee
Q 017601 161 WSMAAVARSFSKSIDVYDQDIHLR---TLRTLW---YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLH 234 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~~~~---~~~~~~---~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~ 234 (369)
. .+|+- .|..|.+|+...... .+.... +...+..-.|.|. .++..+++..|++++.||+|+. ++..
T Consensus 136 ~-klasm--~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspH--Hdgnqv~tt~d~tl~~~D~RT~---~~~~ 207 (370)
T KOG1007|consen 136 D-KLASM--DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPH--HDGNQVATTSDSTLQFWDLRTM---KKNN 207 (370)
T ss_pred C-eeEEe--ccCceEEEEcccCcchheeecccccccccceecccccCCC--CccceEEEeCCCcEEEEEccch---hhhc
Confidence 5 44544 489999998763222 221110 1111111222221 3456667778899999999988 5555
Q ss_pred eeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 235 RICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 235 ~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
.+...++..|..+.|+|+- .|++|+.|+.|++||.|+ ..++.++.+| ...|.+|.|+|...++++|+|.|..|.+|
T Consensus 208 sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H-sHWvW~VRfn~~hdqLiLs~~SDs~V~Ls 286 (370)
T KOG1007|consen 208 SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH-SHWVWAVRFNPEHDQLILSGGSDSAVNLS 286 (370)
T ss_pred chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC-ceEEEEEEecCccceEEEecCCCceeEEE
Confidence 5543226889999999998 999999999999999997 6789999999 99999999999878899999999999999
Q ss_pred ECcCC-----------------------------ceeEEEEcCCCeeeeeE----cCCCCEEEEEeCCCcEEEEECCC
Q 017601 312 QWRES-----------------------------SKVFAFRGDSNWLGFSK----CSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 312 d~~~~-----------------------------~~~~~~~g~~~~~~~~~----~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
....- ..+.+|..|. .++-. +.|..++||-|.||.+.|=.+..
T Consensus 287 ca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE--DSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 287 CASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE--DSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eccccccccccccccccccCcchhhHHhcccccccccccccccc--cceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 76430 2334555565 33333 23899999999999999876643
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=155.54 Aligned_cols=245 Identities=14% Similarity=0.165 Sum_probs=177.2
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
+-.+.|.+|+|||.. ..++++++-+|+|++|+++..+..... ....+ ++.+.+++|+.++ ..++++ +
T Consensus 25 pP~DsIS~l~FSP~~---~~~~~A~SWD~tVR~wevq~~g~~~~k---a~~~~-----~~PvL~v~Wsddg-skVf~g-~ 91 (347)
T KOG0647|consen 25 PPEDSISALAFSPQA---DNLLAAGSWDGTVRIWEVQNSGQLVPK---AQQSH-----DGPVLDVCWSDDG-SKVFSG-G 91 (347)
T ss_pred CcccchheeEecccc---CceEEecccCCceEEEEEecCCcccch---hhhcc-----CCCeEEEEEccCC-ceEEee-c
Confidence 445889999999952 468888999999999999865322221 11112 2346689999855 667777 8
Q ss_pred ccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 170 FSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 170 ~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
.|+++++||+. .++..+.. |...+..+.+++..+ -..|+++|.|.+|+.||+|.. .++.++..+ +.+|++.
T Consensus 92 ~Dk~~k~wDL~S~Q~~~v~~--Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~---~pv~t~~LP--eRvYa~D 163 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQVSQVAA--HDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSS---NPVATLQLP--ERVYAAD 163 (347)
T ss_pred cCCceEEEEccCCCeeeeee--cccceeEEEEecCCC-cceeEecccccceeecccCCC---Ceeeeeecc--ceeeehh
Confidence 99999999986 34444433 333344444433222 347788999999999999988 899999888 8899885
Q ss_pred ECCCCcEEEEeCCCcEEEEeCCCceee-eeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC--ceeEEEEcC
Q 017601 249 SSSTGNIAVAGADRTVTIYDPRRWSAL-SRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES--SKVFAFRGD 325 (369)
Q Consensus 249 ~sp~g~lasgs~D~~v~vwD~~~~~~~-~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~--~~~~~~~g~ 325 (369)
.-. ..++++..++.|.+|+++++... ......++..+.+|+..+ |....+-||..|++-+-.+..+ +.-++|+.|
T Consensus 164 v~~-pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCH 241 (347)
T KOG0647|consen 164 VLY-PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCH 241 (347)
T ss_pred ccC-ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEe
Confidence 421 17788888999999999885433 333444467899999998 8888899999999999988775 666778877
Q ss_pred CC-------e---eeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 326 SN-------W---LGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 326 ~~-------~---~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.+ . ..+...|.-..|++++.||++.+||-...
T Consensus 242 R~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 242 RSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred ccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 62 1 11222446678999999999999996543
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=170.51 Aligned_cols=252 Identities=14% Similarity=0.143 Sum_probs=182.5
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 163 (369)
.++....|..-|..+.+|.. ...+.++.+ |.|.|||+.......+.....+. ..+.-+.++.+.|++ ..
T Consensus 411 rq~~tL~HGEvVcAvtIS~~----trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl-----~rdnyiRSckL~pdg-rt 479 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNP----TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCL-----NRDNYIRSCKLLPDG-RT 479 (705)
T ss_pred HhhhhhccCcEEEEEEecCC----cceeEecCC-CeEEEeeccCCCCCCcccccccc-----CcccceeeeEecCCC-ce
Confidence 34445678888888999876 356676654 78999999865332222111111 112225578999955 45
Q ss_pred EEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 164 AAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
++++ ++-.++.|||+......++........ .+.....++|....+++..||.|.|||++.. ..++.|++| .+.
T Consensus 480 LivG-GeastlsiWDLAapTprikaeltssap-aCyALa~spDakvcFsccsdGnI~vwDLhnq---~~VrqfqGh-tDG 553 (705)
T KOG0639|consen 480 LIVG-GEASTLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDAKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGH-TDG 553 (705)
T ss_pred EEec-cccceeeeeeccCCCcchhhhcCCcch-hhhhhhcCCccceeeeeccCCcEEEEEcccc---eeeecccCC-CCC
Confidence 6666 788999999986544333322111111 1122334577778888999999999999987 788999988 899
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceee----------------------------------------eeccccc
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL----------------------------------------SRWVHCS 282 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~----------------------------------------~~~~~h~ 282 (369)
+.||..++|| .|-+|+-|++|+.||+|.+..+ ..+.-|
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlh- 632 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLH- 632 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeeccc-
Confidence 9999999999 9999999999999999853321 112335
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
...|.++.|.+ -|+.++|.+.|+.+..|-..-+..++..+..+...+...+.|.++|++||.|..-.||.+
T Consensus 633 eScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 633 ESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccEEEEEEecc-cCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 67899999999 999999999999999999888888777765553333333459999999999998888865
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=161.45 Aligned_cols=258 Identities=12% Similarity=0.098 Sum_probs=171.0
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEec------CCC--------CCCcccccc---------cc
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLD------TSG--------KDVDRLTYS---------VL 140 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~------~~~--------~~~~~~~~~---------~~ 140 (369)
..+++.+|.|.|++|.|++.+ .++++++.+++..||... ... ++.+..... ..
T Consensus 182 CL~~Y~GH~GSVNsikfh~s~----~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD 257 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHNSG----LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD 257 (481)
T ss_pred ceeeecccccceeeEEecccc----ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence 456688999999999999974 677777777777777632 100 000000000 00
Q ss_pred CCC--CCC-----CCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEE
Q 017601 141 PQD--CGV-----GEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNML 211 (369)
Q Consensus 141 ~~~--~~~-----~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~ll 211 (369)
+|. .+. ..+-+.++.|-. +...++++ |+|.+-.+||+.. .+..+ ..|...++.+..+| .-..++
T Consensus 258 ~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTa-SWDRTAnlwDVEtge~v~~L--tGHd~ELtHcstHp---tQrLVv 330 (481)
T KOG0300|consen 258 GHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTA-SWDRTANLWDVETGEVVNIL--TGHDSELTHCSTHP---TQRLVV 330 (481)
T ss_pred CceeeeeeeeeeccccceEehhhhc-Ccceeeee-eccccceeeeeccCceeccc--cCcchhccccccCC---cceEEE
Confidence 000 000 001133444554 44566777 9999999999864 33333 22444455444433 123455
Q ss_pred EEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEE
Q 017601 212 AVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLS 290 (369)
Q Consensus 212 a~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~ 290 (369)
+.+.|.++++||+|.. ...+..|++| ...|+++.|+-+..+++|+.|++|+|||+++ ..++.++.. ..+++.++
T Consensus 331 TsSrDtTFRLWDFRea--I~sV~VFQGH-tdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt--dS~~NRva 405 (481)
T KOG0300|consen 331 TSSRDTTFRLWDFREA--IQSVAVFQGH-TDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT--DSPANRVA 405 (481)
T ss_pred EeccCceeEeccchhh--cceeeeeccc-ccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec--CCccceeE
Confidence 6778999999999943 4778889988 8999999999888999999999999999999 456777774 47899999
Q ss_pred EcCCCCCEEEEEECCCeEEEEECcCCceeEE----EEcCCCeeeeeE-cCC--CCEEEEEeCCCcEEEEECCCCc
Q 017601 291 FSSIDSNYIYVQGVDYEVFCGQWRESSKVFA----FRGDSNWLGFSK-CSN--RDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 291 ~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~----~~g~~~~~~~~~-~~d--~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+. .+..++---....|++||++..++.+. -+||.+...... +-+ -.-|++++.|+.+.-|++.+..
T Consensus 406 vs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 406 VSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 998 666666666666899999987654333 257774322221 111 1348899999999999987653
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.1e-20 Score=176.85 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=128.1
Q ss_pred CCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeecccccc
Q 017601 206 GGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSK 283 (369)
Q Consensus 206 ~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~ 283 (369)
..+.||+++.|.|||||++... .|+..|.|. ..|+||+|+|-. ++++|+-|+.|+||++...+.+.... . .
T Consensus 379 Kn~fLLSSSMDKTVRLWh~~~~---~CL~~F~Hn--dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l-~ 451 (712)
T KOG0283|consen 379 KNNFLLSSSMDKTVRLWHPGRK---ECLKVFSHN--DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-L-R 451 (712)
T ss_pred cCCeeEeccccccEEeecCCCc---ceeeEEecC--CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-h-h
Confidence 4679999999999999999987 899999998 999999999988 99999999999999998766655444 3 5
Q ss_pred CceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc---------CCCeeeeeEcC-CCCEEEEEeCCCcEEEEE
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG---------DSNWLGFSKCS-NRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g---------~~~~~~~~~~~-d~~~l~sgs~dg~I~iWd 353 (369)
+-|++++|+| ||++.+.|+.+|.+++++....++...+.- |.+..++..++ +.+.|+..|.|..|+|+|
T Consensus 452 ~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d 530 (712)
T KOG0283|consen 452 DLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYD 530 (712)
T ss_pred hhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEe
Confidence 8899999999 999999999999999999988665544421 22456777666 556777888999999999
Q ss_pred CCCCcchhhhcccCCC
Q 017601 354 VVAKENEISALKGLVN 369 (369)
Q Consensus 354 ~~~~~~~~~~l~g~~~ 369 (369)
.++.+ .+..++|.-|
T Consensus 531 ~~~~~-lv~KfKG~~n 545 (712)
T KOG0283|consen 531 GRDKD-LVHKFKGFRN 545 (712)
T ss_pred ccchh-hhhhhccccc
Confidence 97654 4666777543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-19 Score=150.38 Aligned_cols=235 Identities=13% Similarity=0.089 Sum_probs=172.9
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+...+|.+.|--++|+|.. ..++++++.+.++++||...... ...+.. ..+.+ -+.|+|.+ ..++
T Consensus 58 ~~~~gh~~svdql~w~~~~---~d~~atas~dk~ir~wd~r~~k~-----~~~i~~-----~~eni-~i~wsp~g-~~~~ 122 (313)
T KOG1407|consen 58 LVYRGHTDSVDQLCWDPKH---PDLFATASGDKTIRIWDIRSGKC-----TARIET-----KGENI-NITWSPDG-EYIA 122 (313)
T ss_pred hcccCCCcchhhheeCCCC---CcceEEecCCceEEEEEeccCcE-----EEEeec-----cCcce-EEEEcCCC-CEEE
Confidence 4467899999999999874 56888888888999999975521 111110 11223 48999955 5667
Q ss_pred EEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
++ +.|..|...|..+... +...+....++-+.+. .++..++.....|+|.|-....- ++++.++.| ...-.
T Consensus 123 ~~-~kdD~it~id~r~~~~-~~~~~~~~e~ne~~w~---~~nd~Fflt~GlG~v~ILsypsL---kpv~si~AH-~snCi 193 (313)
T KOG1407|consen 123 VG-NKDDRITFIDARTYKI-VNEEQFKFEVNEISWN---NSNDLFFLTNGLGCVEILSYPSL---KPVQSIKAH-PSNCI 193 (313)
T ss_pred Ee-cCcccEEEEEecccce-eehhcccceeeeeeec---CCCCEEEEecCCceEEEEecccc---ccccccccC-CcceE
Confidence 76 7888899998753221 1122222222222221 23457777777899999988766 888888866 57788
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
||.|+|+| +||+|+.|-.+.+||+...-+++.+.-+ ..+|..|+||- ||++|||+|.|..|-|=++++|..+..+..
T Consensus 194 cI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl-dwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 194 CIEFDPDGRYFATGSADALVSLWDVDELICERCISRL-DWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred EEEECCCCceEeeccccceeeccChhHhhhheeeccc-cCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEeec
Confidence 89999999 9999999999999999998899999999 99999999999 999999999999999999999988777754
Q ss_pred CCCeeeeeEcCCCCEEEEEeCC
Q 017601 325 DSNWLGFSKCSNRDVLGGWSDS 346 (369)
Q Consensus 325 ~~~~~~~~~~~d~~~l~sgs~d 346 (369)
...-..+..-|...+||=+..|
T Consensus 272 ~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 272 EGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cCCceeEEecCCCceeeEEecC
Confidence 3322455556666777755554
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-20 Score=174.38 Aligned_cols=268 Identities=15% Similarity=0.156 Sum_probs=187.0
Q ss_pred hcCCCccccccCc-cccc----ccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccccccc
Q 017601 66 SEGKDSLLIPEQT-PVMD----SSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVL 140 (369)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~----~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~ 140 (369)
..|.++.++-+.. +... .-......|.+.|++|++..++ ..+.|++.+-+|.+|+..... ......+.
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~----~tlIS~SsDtTVK~W~~~~~~---~~c~stir 114 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG----KTLISASSDTTVKVWNAHKDN---TFCMSTIR 114 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC----CceEEecCCceEEEeecccCc---chhHhhhh
Confidence 4566666544433 2111 1133456899999999998763 688888899999999998653 12223344
Q ss_pred CCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcc----eEEEEee-------eCCcceeeeccCCCCCCCCc
Q 017601 141 PQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH----LRTLRTL-------WYPSSLNFVQNLSPVNGGPN 209 (369)
Q Consensus 141 ~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~~~~ 209 (369)
.|+.- +.++++-..+..++|++ +.|+.|.|||+... +.++... .+...+-.++ .++.+..
T Consensus 115 ~H~DY-----Vkcla~~ak~~~lvaSg-GLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA---~N~t~t~ 185 (735)
T KOG0308|consen 115 THKDY-----VKCLAYIAKNNELVASG-GLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA---MNQTGTI 185 (735)
T ss_pred cccch-----heeeeecccCceeEEec-CCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee---cCCcceE
Confidence 44432 34788833355677777 99999999998632 2111111 0111221222 2233445
Q ss_pred EEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEE
Q 017601 210 MLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITG 288 (369)
Q Consensus 210 lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~ 288 (369)
+++++..+-+++||.|++ +.+..+.+| +..|.++-.++|| ++++||.||+|++||+...+++.++..| +..|++
T Consensus 186 ivsGgtek~lr~wDprt~---~kimkLrGH-TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH-~e~VWa 260 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTC---KKIMKLRGH-TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH-KEGVWA 260 (735)
T ss_pred EEecCcccceEEeccccc---cceeeeecc-ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec-cCceEE
Confidence 666778899999999999 777788888 8999999999999 9999999999999999999999999999 889999
Q ss_pred EEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 289 LSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 289 l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+..+| +=.++++|+.|+.|..=|+++ .++...++.......+...-..+-+-.++.|+.|+-|..+
T Consensus 261 L~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 261 LQSSP-SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred EeeCC-CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 99999 999999999999999999998 4555555432210111111112223667788999999764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=161.79 Aligned_cols=251 Identities=16% Similarity=0.206 Sum_probs=182.1
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC---Ccc---c--cc-cccCCCCCCCCCCeeEEEECC
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD---VDR---L--TY-SVLPQDCGVGEGSWSGLCFSP 158 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~---~~~---~--~~-~~~~~~~~~~~~~~~~l~~~p 158 (369)
.-.|+-.|.+++++|+. .++.+++++|+|.-|++.++... ++. . .+ ...++...+. .-+.+++.++
T Consensus 138 ~~~H~~s~~~vals~d~----~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~-keil~~avS~ 212 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDD----KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV-KEILTLAVSS 212 (479)
T ss_pred eccccCcceEEEeeccc----cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc-ceeEEEEEcC
Confidence 45899999999999984 78889999999999999877432 111 0 01 0111111111 2245799999
Q ss_pred CCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee
Q 017601 159 SQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 159 ~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
++.++|++ +.|..|.|||... +++.+.. |...|..+.+- .....+.+++.|.+|++|++... ..+.++
T Consensus 213 -Dgkylatg-g~d~~v~Iw~~~t~ehv~~~~g--hr~~V~~L~fr---~gt~~lys~s~Drsvkvw~~~~~---s~vetl 282 (479)
T KOG0299|consen 213 -DGKYLATG-GRDRHVQIWDCDTLEHVKVFKG--HRGAVSSLAFR---KGTSELYSASADRSVKVWSIDQL---SYVETL 282 (479)
T ss_pred -CCcEEEec-CCCceEEEecCcccchhhcccc--cccceeeeeee---cCccceeeeecCCceEEEehhHh---HHHHHH
Confidence 56688888 8999999999763 4444322 33333222211 12358999999999999999877 667777
Q ss_pred eccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 237 CGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
-+| ++.|.+|.-..-+ .+-+|+.|+++++|++. .+....+.+| .+.+-+++|- +..+++|||.||.|.+|++.+
T Consensus 283 yGH-qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~-~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 283 YGH-QDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGG-EGSIDCVAFI--NDEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred hCC-ccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCC-CCCeeeEEEe--cccceeeccCCceEEEeeecc
Confidence 666 6889998776666 55556699999999993 3444567788 8899999996 457899999999999999999
Q ss_pred CceeEEEEc-CC-----------Cee-eeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 316 SSKVFAFRG-DS-----------NWL-GFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 316 ~~~~~~~~g-~~-----------~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+++++.+- |. .|. ++..++..+++|+||.+|.|++|.+..+-
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 888888752 32 143 33346688999999999999999998883
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=156.91 Aligned_cols=240 Identities=12% Similarity=0.064 Sum_probs=158.5
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
..+.+++|+|++ ..++++...++.+++||..++.. ...+..+. ....++|+|++..+++++ +.++
T Consensus 31 ~~~~~l~~~~dg---~~l~~~~~~~~~v~~~d~~~~~~-----~~~~~~~~------~~~~~~~~~~g~~l~~~~-~~~~ 95 (300)
T TIGR03866 31 QRPRGITLSKDG---KLLYVCASDSDTIQVIDLATGEV-----IGTLPSGP------DPELFALHPNGKILYIAN-EDDN 95 (300)
T ss_pred CCCCceEECCCC---CEEEEEECCCCeEEEEECCCCcE-----EEeccCCC------CccEEEECCCCCEEEEEc-CCCC
Confidence 446789999984 34446667788999999875411 11111111 123589999665444554 6789
Q ss_pred eEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCC-eEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 173 SIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC-QLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 173 ~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~-~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
.|++||.... +..+.....+..+.+ +|++..+++++.++ .+.+||.+++ ..+..+... ..+.+++|
T Consensus 96 ~l~~~d~~~~~~~~~~~~~~~~~~~~~------~~dg~~l~~~~~~~~~~~~~d~~~~---~~~~~~~~~--~~~~~~~~ 164 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIPVGVEPEGMAV------SPDGKIVVNTSETTNMAHFIDTKTY---EIVDNVLVD--QRPRFAEF 164 (300)
T ss_pred eEEEEECCCCeEEeEeeCCCCcceEEE------CCCCCEEEEEecCCCeEEEEeCCCC---eEEEEEEcC--CCccEEEE
Confidence 9999998642 222221112233333 35566777666654 5778899876 555444433 45678999
Q ss_pred CCCC-cEE-EEeCCCcEEEEeCCCceeeeeccccc----cC--ceEEEEEcCCCCCEEEE-EECCCeEEEEECcCCceeE
Q 017601 250 SSTG-NIA-VAGADRTVTIYDPRRWSALSRWVHCS----KY--EITGLSFSSIDSNYIYV-QGVDYEVFCGQWRESSKVF 320 (369)
Q Consensus 250 sp~g-~la-sgs~D~~v~vwD~~~~~~~~~~~~h~----~~--~v~~l~~sp~d~~~l~s-~s~D~~i~vwd~~~~~~~~ 320 (369)
+|+| +|+ ++..++.|++||+++++.+..+..+. .. ....++|+| ++++++. .+.++++.+||.++++...
T Consensus 165 s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 165 TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 9999 664 55569999999999988776654220 11 235789999 9988554 4567789999999888776
Q ss_pred EEEcCCCeeeeeEcCCCCEEEEE-eCCCcEEEEECCCCcc
Q 017601 321 AFRGDSNWLGFSKCSNRDVLGGW-SDSGSIFVADVVAKEN 359 (369)
Q Consensus 321 ~~~g~~~~~~~~~~~d~~~l~sg-s~dg~I~iWd~~~~~~ 359 (369)
.+..+.....+...+++.+|+++ ..+|.|++||+++++.
T Consensus 244 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 244 YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 55322223455667899998876 4689999999998763
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-19 Score=153.86 Aligned_cols=253 Identities=16% Similarity=0.171 Sum_probs=169.4
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEE-CCCCceeEEEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCF-SPSQWSMAAVA 167 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~p~~~~~~a~~ 167 (369)
.+|++-|.++.|.+- +.++|+++.++++.|||.+.... ++.+..+=. .+++.+-.+.| +|.-++.+|+|
T Consensus 10 s~h~DlihdVs~D~~----GRRmAtCSsDq~vkI~d~~~~s~-----~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~c 79 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFY----GRRMATCSSDQTVKIWDSTSDSG-----TWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATC 79 (361)
T ss_pred cCCcceeeeeeeccc----CceeeeccCCCcEEEEeccCCCC-----ceEEeeeEE-ecCCcEEEEEecCccccceEEEE
Confidence 578999999999886 47999999999999999754422 233222111 11233445777 56666788888
Q ss_pred ecccceEEEEeCC-----cc----eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC---ceeee
Q 017601 168 RSFSKSIDVYDQD-----IH----LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG---GCLHR 235 (369)
Q Consensus 168 ~s~d~~i~lwd~~-----~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~---~~~~~ 235 (369)
|+|+++.||+-. .+ ++.-........+..+.+.|.- -|-.|++++.||++|||+.-...+. ...+.
T Consensus 80 -S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h-lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 80 -SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH-LGLKLAAASADGILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred -ecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh-cceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence 999999999642 11 1111112233444444443332 2567888999999999987643211 11222
Q ss_pred ee------ccCCCcEEEEEECCCC----cEEEEeCC-----CcEEEEeC----CCceeeeeccccccCceEEEEEcCCCC
Q 017601 236 IC------GSVGDILYAVCSSSTG----NIAVAGAD-----RTVTIYDP----RRWSALSRWVHCSKYEITGLSFSSIDS 296 (369)
Q Consensus 236 ~~------~~~~~~v~~v~~sp~g----~lasgs~D-----~~v~vwD~----~~~~~~~~~~~h~~~~v~~l~~sp~d~ 296 (369)
++ +....+-.|+.|+|.- +||.|+.+ +.++||.. |++..+.++.+| +++|+.++|.|.-|
T Consensus 158 i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~-~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH-TDPIRDISWAPNIG 236 (361)
T ss_pred hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC-CCcceeeeeccccC
Confidence 32 0113678899999865 78888876 47889864 345677889999 99999999999544
Q ss_pred ---CEEEEEECCCeEEEEECcCC--------------------ceeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEE
Q 017601 297 ---NYIYVQGVDYEVFCGQWRES--------------------SKVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 297 ---~~l~s~s~D~~i~vwd~~~~--------------------~~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iW 352 (369)
.+||+++.|| |+||.++.. +.+..|.+|.. ...+...-.|..|+|.+.||.|++|
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 3689999999 999999741 33444556651 1122223379999999999999999
Q ss_pred ECC
Q 017601 353 DVV 355 (369)
Q Consensus 353 d~~ 355 (369)
...
T Consensus 316 kan 318 (361)
T KOG2445|consen 316 KAN 318 (361)
T ss_pred hhh
Confidence 754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-19 Score=175.49 Aligned_cols=253 Identities=14% Similarity=0.118 Sum_probs=185.8
Q ss_pred ccceeeEEEEeecCCCCceEEEEEe--cCCcEEEEEecCCCCCCccccccccCCCC--CCCCCCeeEEEECCCCceeEEE
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVD--SYGHLIVSKLDTSGKDVDRLTYSVLPQDC--GVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d--~~g~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
+...|.+|+.+|| +..+|+++ .+|.+.+|+.+.-..+.......++.+.. ..+.+.+.++.|+| ++.++|+
T Consensus 12 ~~~~IfSIdv~pd----g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAs 86 (942)
T KOG0973|consen 12 NEKSIFSIDVHPD----GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLAS 86 (942)
T ss_pred CCeeEEEEEecCC----ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEee
Confidence 3466899999998 48999998 78888899987543211111111111111 11234567899999 5668999
Q ss_pred EecccceEEEEeCCc--------------ce---EE-EEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 167 ARSFSKSIDVYDQDI--------------HL---RT-LRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~--------------~~---~~-~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
| |.|+.|.||+... .+ +. .....|...+..+.|. |++..|++++-|++|.|||.++.
T Consensus 87 G-SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws---p~~~~lvS~s~DnsViiwn~~tF- 161 (942)
T KOG0973|consen 87 G-SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS---PDDSLLVSVSLDNSVIIWNAKTF- 161 (942)
T ss_pred c-cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC---CCccEEEEecccceEEEEccccc-
Confidence 8 9999999997541 00 11 1122366666666654 46778999999999999999998
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccc-----cCceEEEEEcCCCCCEEEEE
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCS-----KYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~-----~~~v~~l~~sp~d~~~l~s~ 302 (369)
..+.++.+| ...|-.+.|.|-| +||+-+.|++|+||++.++...+.+.++- ..-.+.+.||| ||.+|++.
T Consensus 162 --~~~~vl~~H-~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~ 237 (942)
T KOG0973|consen 162 --ELLKVLRGH-QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASP 237 (942)
T ss_pred --eeeeeeecc-cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecch
Confidence 788888887 7899999999999 99999999999999988888877766551 12478999999 99999985
Q ss_pred E----CCCeEEEEECcCCceeEEEEcCCCeeeeeE---cC-------------CCC----EEEEEeCCCcEEEEECCCCc
Q 017601 303 G----VDYEVFCGQWRESSKVFAFRGDSNWLGFSK---CS-------------NRD----VLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 303 s----~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~-------------d~~----~l~sgs~dg~I~iWd~~~~~ 358 (369)
- .-.++.|.+-.+-+.-..|-||. .+++. .| .++ .+|+||.|++|.||.....+
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~~LvGH~--~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDKDLVGHS--APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hhccCCcceeEEEecCCceeeeeeecCC--CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 3 23478888877777778888998 34333 22 122 78999999999999987665
Q ss_pred c
Q 017601 359 N 359 (369)
Q Consensus 359 ~ 359 (369)
.
T Consensus 316 P 316 (942)
T KOG0973|consen 316 P 316 (942)
T ss_pred c
Confidence 4
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=151.02 Aligned_cols=241 Identities=15% Similarity=0.187 Sum_probs=169.8
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
++-++.|.++.|+|.+ ..|...+-+|.+++++..... + ..++.. +..+..++|.+ ...++++
T Consensus 10 npP~d~IS~v~f~~~~----~~LLvssWDgslrlYdv~~~~--l-~~~~~~--------~~plL~c~F~d--~~~~~~G- 71 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSS----SDLLVSSWDGSLRLYDVPANS--L-KLKFKH--------GAPLLDCAFAD--ESTIVTG- 71 (323)
T ss_pred CCChhceeeEEEcCcC----CcEEEEeccCcEEEEeccchh--h-hhheec--------CCceeeeeccC--CceEEEe-
Confidence 4456889999999763 344444588999999988551 1 111211 22355789987 4567777
Q ss_pred cccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 169 SFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
+.|+.|+++|+...... ....|...+..+... +..+.++++|.|++|++||.|.. ..+..+... ..|+|+.
T Consensus 72 ~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~---~~~~~vIsgsWD~~ik~wD~R~~---~~~~~~d~~--kkVy~~~ 142 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYS---YEVGCVISGSWDKTIKFWDPRNK---VVVGTFDQG--KKVYCMD 142 (323)
T ss_pred ccCceEEEEEecCCcce-eeccCCCceEEEEee---ccCCeEEEcccCccEEEEecccc---ccccccccC--ceEEEEe
Confidence 89999999998632221 122233344444432 23569999999999999999975 566666554 7899987
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCceeee-eccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC----ceeEEE
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWSALS-RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES----SKVFAF 322 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~----~~~~~~ 322 (369)
.+ | .|++|..|..|.+||+|+..... .-...++..+.+|++-| ++.-.+.+|.||+|.+=.++.. +..+.|
T Consensus 143 v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaF 219 (323)
T KOG1036|consen 143 VS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF 219 (323)
T ss_pred cc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeE
Confidence 64 5 89999999999999999954433 22333478899999999 8888899999999988777765 566777
Q ss_pred EcCCCe----------eeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 323 RGDSNW----------LGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 323 ~g~~~~----------~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.|... ..+...|--..||||+.||.|.+||..+++.
T Consensus 220 kCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 220 KCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred EeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh
Confidence 777511 1222233456799999999999999988764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-19 Score=170.86 Aligned_cols=242 Identities=15% Similarity=0.134 Sum_probs=181.8
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+..|++.-+.|+|.|++ ..|.+++.+|.|++|+......+.+. +. .....+.+++.. .+.|+++
T Consensus 9 Ryaht~G~t~i~~d~~g----efi~tcgsdg~ir~~~~~sd~e~P~t----i~-----~~g~~v~~ia~~---s~~f~~~ 72 (933)
T KOG1274|consen 9 RYAHTGGLTLICYDPDG----EFICTCGSDGDIRKWKTNSDEEEPET----ID-----ISGELVSSIACY---SNHFLTG 72 (933)
T ss_pred hhhccCceEEEEEcCCC----CEEEEecCCCceEEeecCCcccCCch----hh-----ccCceeEEEeec---ccceEEe
Confidence 45799999999999984 69999999999999987643111111 10 001113344443 3478888
Q ss_pred ecccceEEEEeCCcceE--EEEeeeCC-cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 168 RSFSKSIDVYDQDIHLR--TLRTLWYP-SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~--~~~~~~~~-~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+.+++|.+|..+.... .+.-+.-| ..+.+.. +|..++++|+|-.|++-++... .....+.++ ..+|
T Consensus 73 -s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g------~g~~iaagsdD~~vK~~~~~D~---s~~~~lrgh-~apV 141 (933)
T KOG1274|consen 73 -SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG------SGKMIAAGSDDTAVKLLNLDDS---SQEKVLRGH-DAPV 141 (933)
T ss_pred -eccceEEEeeCCCCCccceeeeeeccceEEEEec------CCcEEEeecCceeEEEEecccc---chheeeccc-CCce
Confidence 9999999997653211 11111122 2333332 4678888999999999999887 666777776 7999
Q ss_pred EEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc-------ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 245 YAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC-------SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 245 ~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h-------~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
.++.|+|++ +||+.+.||.|++||+.++.+..++.+- ....+..++|+| ++..++..+.|++|++++....
T Consensus 142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred eeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCc
Confidence 999999999 9999999999999999998888777642 124578899999 9888999999999999999999
Q ss_pred ceeEEEEcCC---CeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 317 SKVFAFRGDS---NWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 317 ~~~~~~~g~~---~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+..+.++... .+..+..+|+|.+||+++.||.|.|||+++.
T Consensus 221 e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 9999997633 2233344779999999999999999999863
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-19 Score=152.66 Aligned_cols=250 Identities=12% Similarity=0.114 Sum_probs=169.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.++|.+++|+.|+ +.+|++..++.|++|++..-.. ..+ ..+.. +... .--+.++|.|+-..+++.+
T Consensus 82 LKgH~~~vt~~~FsSdG----K~lat~~~Dr~Ir~w~~~DF~~--~eH-r~~R~-nve~--dhpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDG----KKLATISGDRSIRLWDVRDFEN--KEH-RCIRQ-NVEY--DHPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred hhccCCceeeeEEcCCC----ceeEEEeCCceEEEEecchhhh--hhh-hHhhc-cccC--CCceEEEECCCcceEEEEE
Confidence 56999999999999984 8999999999999999974311 000 11110 0000 0124699999877777766
Q ss_pred ecccceEEEEeCCcce-----EE-EEe----eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee
Q 017601 168 RSFSKSIDVYDQDIHL-----RT-LRT----LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC 237 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~-----~~-~~~----~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~ 237 (369)
-...++++|...+.. .. .+. +.....+..+.... ...+..+.+++.|.+|.|||++ + +.+..+.
T Consensus 152 -~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lk-G---q~L~~id 225 (420)
T KOG2096|consen 152 -KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLK-G---QLLQSID 225 (420)
T ss_pred -ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecC-C---ceeeeec
Confidence 566789999653211 00 000 00011111222111 1224467778999999999998 6 6777776
Q ss_pred ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCC---Cc-----eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 238 GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPR---RW-----SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 238 ~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~---~~-----~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
.. ...-+..+.||+| .+|+++-.--|+||.+- .| ..+..++|| +..|+.++||+ +.+.+++.|.||++
T Consensus 226 tn-q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn-~S~r~vtvSkDG~w 302 (420)
T KOG2096|consen 226 TN-QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSN-SSTRAVTVSKDGKW 302 (420)
T ss_pred cc-cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCC-CcceeEEEecCCcE
Confidence 54 4666778999999 89999988899999852 22 235678999 99999999999 99999999999999
Q ss_pred EEEECcC-------CceeEEE-------EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 309 FCGQWRE-------SSKVFAF-------RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 309 ~vwd~~~-------~~~~~~~-------~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
|+||.+- .+.++.+ .+.. ..+.-||+|+.||.. ....++++..++++.
T Consensus 303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p--~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEP--VRLELSPSGDSLAVS-FGSDLKVFASEDGKD 364 (420)
T ss_pred EEeeccceEecCCCchHhhcCCcchhhcCCCc--eEEEeCCCCcEEEee-cCCceEEEEcccCcc
Confidence 9999853 2223322 1112 344457788877654 456799999988764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=158.16 Aligned_cols=238 Identities=12% Similarity=0.064 Sum_probs=169.7
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.|..+|-+++.|+|+ ..+|+++.+-++.||+.++. .+.+.+..|.. .+.+++|-. +...+.++ +
T Consensus 200 ~h~keil~~avS~Dg----kylatgg~d~~v~Iw~~~t~-----ehv~~~~ghr~-----~V~~L~fr~-gt~~lys~-s 263 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDG----KYLATGGRDRHVQIWDCDTL-----EHVKVFKGHRG-----AVSSLAFRK-GTSELYSA-S 263 (479)
T ss_pred cccceeEEEEEcCCC----cEEEecCCCceEEEecCccc-----chhhccccccc-----ceeeeeeec-Cccceeee-e
Confidence 899999999999984 89999999999999999865 22222333433 356899987 55667777 8
Q ss_pred ccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 170 FSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
.|++|++|+++.....-..+.|+..+.-+.... -.+.++++ -|+++++|++... .. ..+.++ .+.+-|++
T Consensus 264 ~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~----reR~vtVGgrDrT~rlwKi~ee---sq-lifrg~-~~sidcv~ 334 (479)
T KOG0299|consen 264 ADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS----RERCVTVGGRDRTVRLWKIPEE---SQ-LIFRGG-EGSIDCVA 334 (479)
T ss_pred cCCceEEEehhHhHHHHHHhCCccceeeechhc----ccceEEeccccceeEEEecccc---ce-eeeeCC-CCCeeeEE
Confidence 999999999874332222344666555554322 35788876 7999999999533 22 234444 57999999
Q ss_pred ECCCCcEEEEeCCCcEEEEeCCCceeeeecc-ccc----------cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC-
Q 017601 249 SSSTGNIAVAGADRTVTIYDPRRWSALSRWV-HCS----------KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES- 316 (369)
Q Consensus 249 ~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~-~h~----------~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~- 316 (369)
|-.+..+++||.||+|.+|++.+.+++.+.. .|. ...|++|+..| ...+++|||.+|.||+|-+..+
T Consensus 335 ~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 335 FINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred EecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCc
Confidence 9877799999999999999999988887654 220 22789999999 9999999999999999999876
Q ss_pred ---ceeEEEEcCCCeeeeeEcCCCC-EEEEEeCCCcEEEEE
Q 017601 317 ---SKVFAFRGDSNWLGFSKCSNRD-VLGGWSDSGSIFVAD 353 (369)
Q Consensus 317 ---~~~~~~~g~~~~~~~~~~~d~~-~l~sgs~dg~I~iWd 353 (369)
.++..+.-..-...+...++|. ++++.+....+=-|-
T Consensus 414 r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 414 RAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred cccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence 2333332111112333355777 555666666665553
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=149.78 Aligned_cols=231 Identities=14% Similarity=0.102 Sum_probs=166.0
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+..|...+.+.+|.++ ..+.+++-+|.|+.+|+.++.. ..+..| ++++.++.+++. .+.+++
T Consensus 49 ~~~~~~~plL~c~F~d~-----~~~~~G~~dg~vr~~Dln~~~~------~~igth-----~~~i~ci~~~~~-~~~vIs 111 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFADE-----STIVTGGLDGQVRRYDLNTGNE------DQIGTH-----DEGIRCIEYSYE-VGCVIS 111 (323)
T ss_pred hheecCCceeeeeccCC-----ceEEEeccCceEEEEEecCCcc------eeeccC-----CCceEEEEeecc-CCeEEE
Confidence 35689999999999885 5888999999999999987632 223333 345678999984 456666
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+ |+|++|++||........ ....+..+-.+.. .++.|+.++.|..+.+||+|..+ ...+.....-...+.|
T Consensus 112 g-sWD~~ik~wD~R~~~~~~-~~d~~kkVy~~~v-----~g~~LvVg~~~r~v~iyDLRn~~--~~~q~reS~lkyqtR~ 182 (323)
T KOG1036|consen 112 G-SWDKTIKFWDPRNKVVVG-TFDQGKKVYCMDV-----SGNRLVVGTSDRKVLIYDLRNLD--EPFQRRESSLKYQTRC 182 (323)
T ss_pred c-ccCccEEEEecccccccc-ccccCceEEEEec-----cCCEEEEeecCceEEEEEccccc--chhhhccccceeEEEE
Confidence 6 999999999986422221 2222334444432 35688888999999999999763 2222211111378999
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCCCc----eeeeecccccc---------CceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPRRW----SALSRWVHCSK---------YEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~~~----~~~~~~~~h~~---------~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
|++-|++ -++++|-||.|.+=.+... +....|+.| . .+|++++|+| --+.|+||+.||.|.+||
T Consensus 183 v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH-r~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 183 VALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH-RLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee-ecccCCceEEEEeceeEecc-ccceEEecCCCceEEEcc
Confidence 9999988 8899999999987555543 333455555 3 4799999999 677899999999999999
Q ss_pred CcCCceeEEEEcCC-CeeeeeEcCCCCEEEEEeC
Q 017601 313 WRESSKVFAFRGDS-NWLGFSKCSNRDVLGGWSD 345 (369)
Q Consensus 313 ~~~~~~~~~~~g~~-~~~~~~~~~d~~~l~sgs~ 345 (369)
+.+.+.+..|..-. ....+..+.||..||.++.
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99988877775543 2233444559999998874
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-19 Score=166.38 Aligned_cols=200 Identities=13% Similarity=0.093 Sum_probs=157.9
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
|...|-+++|.. .++.+++.+|.|..+|+....... . .++.|. ..+++++|++ +..++|++ +.
T Consensus 259 h~~rvg~laW~~------~~lssGsr~~~I~~~dvR~~~~~~-~---~~~~H~-----qeVCgLkws~-d~~~lASG-gn 321 (484)
T KOG0305|consen 259 HASRVGSLAWNS------SVLSSGSRDGKILNHDVRISQHVV-S---TLQGHR-----QEVCGLKWSP-DGNQLASG-GN 321 (484)
T ss_pred cCceeEEEeccC------ceEEEecCCCcEEEEEEecchhhh-h---hhhccc-----ceeeeeEECC-CCCeeccC-CC
Confidence 999999999974 589999999999999997552111 1 122232 2378999999 56688998 99
Q ss_pred cceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 171 SKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 171 d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
|+.+.|||.......++...|..++..+.+.|..+ +.|++++ .|++|++||..++ ..+..+... ..|.+|.
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--~lLAsGGGs~D~~i~fwn~~~g---~~i~~vdtg--sQVcsL~ 394 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--GLLATGGGSADRCIKFWNTNTG---ARIDSVDTG--SQVCSLI 394 (484)
T ss_pred ccceEeccCCCccccEEEeccceeeeEeeeCCCcc--CceEEcCCCcccEEEEEEcCCC---cEecccccC--CceeeEE
Confidence 99999999854333344444555665666555433 4666644 5999999999988 788777665 8999999
Q ss_pred ECCCC-cEEE--EeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 249 SSSTG-NIAV--AGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 249 ~sp~g-~las--gs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
|++.. .|++ |-.++.|.||+..+.+.+..+.+| ...|..+++|| ||..+++++.|.++++|++-..
T Consensus 395 Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH-~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 395 WSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH-TSRVLYLALSP-DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC-cceeEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence 99998 5544 456789999999999999999999 99999999999 9999999999999999998663
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=160.50 Aligned_cols=211 Identities=15% Similarity=0.077 Sum_probs=161.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
++--.+.|.+|+-+|.+ ..|+.+...|++++|.+.++.- ...+..|-.. ++++.|+- ++.+|.++
T Consensus 77 ~~v~Pg~v~al~s~n~G----~~l~ag~i~g~lYlWelssG~L-----L~v~~aHYQ~-----ITcL~fs~-dgs~iiTg 141 (476)
T KOG0646|consen 77 YIVLPGPVHALASSNLG----YFLLAGTISGNLYLWELSSGIL-----LNVLSAHYQS-----ITCLKFSD-DGSHIITG 141 (476)
T ss_pred hcccccceeeeecCCCc----eEEEeecccCcEEEEEeccccH-----HHHHHhhccc-----eeEEEEeC-CCcEEEec
Confidence 55567899999999874 6777777889999999997721 1112223222 56899998 56688888
Q ss_pred ecccceEEEEeCCc--------ceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 168 RSFSKSIDVYDQDI--------HLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 168 ~s~d~~i~lwd~~~--------~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
|.|+.|.+|++.. ....++.+. |.-.+..+.....+ -..+++++|.|.++++||+..+ ..+.++.-
T Consensus 142 -skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg-~~~rl~TaS~D~t~k~wdlS~g---~LLlti~f 216 (476)
T KOG0646|consen 142 -SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG-TNARLYTASEDRTIKLWDLSLG---VLLLTITF 216 (476)
T ss_pred -CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC-ccceEEEecCCceEEEEEeccc---eeeEEEec
Confidence 9999999997532 222333332 33455555543322 3569999999999999999998 78888887
Q ss_pred cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc----------------eeeeeccccccC--ceEEEEEcCCCCCEE
Q 017601 239 SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW----------------SALSRWVHCSKY--EITGLSFSSIDSNYI 299 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~----------------~~~~~~~~h~~~--~v~~l~~sp~d~~~l 299 (369)
+ ..+.+++.+|-+ .+..|+.+|.|.+.++.+. ..+..+.|| .+ .|++++.|- ||.+|
T Consensus 217 p--~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh-~~~~~ITcLais~-DgtlL 292 (476)
T KOG0646|consen 217 P--SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH-ENESAITCLAIST-DGTLL 292 (476)
T ss_pred C--CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc-cCCcceeEEEEec-CccEE
Confidence 7 899999999999 9999999999988886542 234567789 77 999999999 99999
Q ss_pred EEEECCCeEEEEECcCCceeEEE
Q 017601 300 YVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 300 ~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
+||+.||.|+|||+...++++++
T Consensus 293 lSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 293 LSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred EeeCCCCCEEEEecchHHHHHHH
Confidence 99999999999999886666555
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-20 Score=178.66 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=151.3
Q ss_pred eEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 163 MAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
.++.| ++|..+.||...+....+....|...+..+. ++.+...+++++.+|+|++||+... +.++++.++ ..
T Consensus 42 ~~~~G-g~~~k~~L~~i~kp~~i~S~~~hespIeSl~---f~~~E~LlaagsasgtiK~wDleeA---k~vrtLtgh-~~ 113 (825)
T KOG0267|consen 42 SLVTG-GEDEKVNLWAIGKPNAITSLTGHESPIESLT---FDTSERLLAAGSASGTIKVWDLEEA---KIVRTLTGH-LL 113 (825)
T ss_pred eeccC-CCceeeccccccCCchhheeeccCCcceeee---cCcchhhhcccccCCceeeeehhhh---hhhhhhhcc-cc
Confidence 44444 8999999998876554443333444444444 2334456667788999999999988 888898887 78
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
.+.++.|+|-+ ++|+|+.|.-+++||+|...+.+.+.+| ...|..++|+| +|+++++++.|.++++||...++.+..
T Consensus 114 ~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 114 NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred CcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecC-CCceeeccCCcceeeeecccccccccc
Confidence 99999999999 9999999999999999999999999999 99999999999 999999999999999999999999999
Q ss_pred EEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 322 FRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 322 ~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|.+|..- ..+..-+..-++++||.|++|++||+++-+
T Consensus 192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred cccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 9988711 122223345679999999999999998654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-17 Score=143.33 Aligned_cols=239 Identities=14% Similarity=0.083 Sum_probs=161.8
Q ss_pred ccceeeEEEEeecCCCCceEEEE-EecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 91 HRSEVQSIALAETDSSGYMVLGS-VDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las-~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
++-.|..++|.... ..++.+ .-.+-.|+..++.+. ....-..+|... +.+|+.+|-+ ..++++ |
T Consensus 55 kkyG~~~~~Fth~~---~~~i~sStk~d~tIryLsl~dN-----kylRYF~GH~~~-----V~sL~~sP~~-d~FlS~-S 119 (311)
T KOG1446|consen 55 KKYGVDLACFTHHS---NTVIHSSTKEDDTIRYLSLHDN-----KYLRYFPGHKKR-----VNSLSVSPKD-DTFLSS-S 119 (311)
T ss_pred ccccccEEEEecCC---ceEEEccCCCCCceEEEEeecC-----ceEEEcCCCCce-----EEEEEecCCC-CeEEec-c
Confidence 44567888887642 234433 323457877777644 111223444432 5589999955 677887 9
Q ss_pred ccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc--CCCcEE
Q 017601 170 FSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS--VGDILY 245 (369)
Q Consensus 170 ~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~--~~~~v~ 245 (369)
.|++|++||+. ++.-.+.. ..+..++ ++|+|-.++++.....|+|||+|.-++ .+..++... .....+
T Consensus 120 ~D~tvrLWDlR~~~cqg~l~~-~~~pi~A------fDp~GLifA~~~~~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~ 191 (311)
T KOG1446|consen 120 LDKTVRLWDLRVKKCQGLLNL-SGRPIAA------FDPEGLIFALANGSELIKLYDLRSFDK-GPFTTFSITDNDEAEWT 191 (311)
T ss_pred cCCeEEeeEecCCCCceEEec-CCCccee------ECCCCcEEEEecCCCeEEEEEecccCC-CCceeEccCCCCcccee
Confidence 99999999986 23322222 2222222 335444444444555999999997532 444444321 146789
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCce---EEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEI---TGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v---~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
.+.||||| .++.+...+.+.+.|.-+|....++.++ ...- .+..|+| |++++++|+.||+|.+|+++++..+..
T Consensus 192 ~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~-~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 192 DLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY-PNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred eeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec-cCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 99999999 8888888999999999999999998877 4432 5789999 999999999999999999999999999
Q ss_pred EEcCCCeeeeeEcC--CCCEEEEEeCCCcEEEEECCC
Q 017601 322 FRGDSNWLGFSKCS--NRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 322 ~~g~~~~~~~~~~~--d~~~l~sgs~dg~I~iWd~~~ 356 (369)
++|.. .+-..|. +..+..-.+.+..+.+|=...
T Consensus 270 ~~~~~--~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 270 LRGPN--GGPVSCVRFNPRYAMFVSASSNLVFWLPDE 304 (311)
T ss_pred ecCCC--CCCccccccCCceeeeeecCceEEEEeccc
Confidence 98842 1222222 455555556677888886543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-20 Score=177.06 Aligned_cols=233 Identities=17% Similarity=0.178 Sum_probs=171.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
...|...|.++.+-.. ...++.+..+-.+-+|...+... + ..+..|. .++-+|.|++ .+.+++.+
T Consensus 24 ~~~hsaav~~lk~~~s----~r~~~~Gg~~~k~~L~~i~kp~~-i----~S~~~he-----spIeSl~f~~-~E~Llaag 88 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKS----SRSLVTGGEDEKVNLWAIGKPNA-I----TSLTGHE-----SPIESLTFDT-SERLLAAG 88 (825)
T ss_pred hhhhhhhhceeeeecc----ceeeccCCCceeeccccccCCch-h----heeeccC-----CcceeeecCc-chhhhccc
Confidence 4467888888887222 35777777777787888775422 1 1233343 3455899999 55667776
Q ss_pred ecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.+++|++||+. +.++++.. +...+..++++|+ +.+++.++.|.-+++||.|.. .|.+.+.++ ...+.
T Consensus 89 -sasgtiK~wDleeAk~vrtLtg--h~~~~~sv~f~P~---~~~~a~gStdtd~~iwD~Rk~---Gc~~~~~s~-~~vv~ 158 (825)
T KOG0267|consen 89 -SASGTIKVWDLEEAKIVRTLTG--HLLNITSVDFHPY---GEFFASGSTDTDLKIWDIRKK---GCSHTYKSH-TRVVD 158 (825)
T ss_pred -ccCCceeeeehhhhhhhhhhhc--cccCcceeeeccc---eEEeccccccccceehhhhcc---CceeeecCC-cceeE
Confidence 999999999986 44454432 2222333334443 446667888999999999977 799998876 68899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
++.|+|+| ++++|++|.+++|||.+.|+.+.+|..| ...+.++.|+| ..-++++||.|+++++||+++-+.+-....
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccccccccccccc-cccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 99999999 9999999999999999999999999999 99999999999 888999999999999999997555544433
Q ss_pred CC-CeeeeeEcCCCCEEEEEeCCC
Q 017601 325 DS-NWLGFSKCSNRDVLGGWSDSG 347 (369)
Q Consensus 325 ~~-~~~~~~~~~d~~~l~sgs~dg 347 (369)
.. ...+....+++..+++|.++.
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccCCceeeeecCCceeeecCchhh
Confidence 22 001222244777777776554
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=158.12 Aligned_cols=253 Identities=12% Similarity=0.122 Sum_probs=182.6
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceE
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSI 174 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i 174 (369)
|.++.|+... ..++|+...+..+.+|.-.....+++.. ...... .+ .||+.... ..+++++ +..++|
T Consensus 37 ~~s~~w~~~n---~lvvas~~gdk~~~~~~K~g~~~~Vp~~-~k~~gd----~~---~Cv~~~s~-S~y~~sg-G~~~~V 103 (673)
T KOG4378|consen 37 DFSFNWQRRN---FLVVASMAGDKVMRIKEKDGKTPEVPRV-RKLTGD----NA---FCVACASQ-SLYEISG-GQSGCV 103 (673)
T ss_pred ceeeeccccc---eEEEeecCCceeEEEecccCCCCcccee-eccccc----hH---HHHhhhhc-ceeeecc-CcCcee
Confidence 8999998763 4677777777788888765332222210 001110 01 12333331 2345555 889999
Q ss_pred EEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC
Q 017601 175 DVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG 253 (369)
Q Consensus 175 ~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g 253 (369)
+|||+.. .+... ...|...+.++.+ +..+.+|++++..|.|.|..+.++ ....+|.+..+..|.-+.|+|..
T Consensus 104 kiwdl~~kl~hr~-lkdh~stvt~v~Y---N~~DeyiAsvs~gGdiiih~~~t~---~~tt~f~~~sgqsvRll~ys~sk 176 (673)
T KOG4378|consen 104 KIWDLRAKLIHRF-LKDHQSTVTYVDY---NNTDEYIASVSDGGDIIIHGTKTK---QKTTTFTIDSGQSVRLLRYSPSK 176 (673)
T ss_pred eehhhHHHHHhhh-ccCCcceeEEEEe---cCCcceeEEeccCCcEEEEecccC---ccccceecCCCCeEEEeeccccc
Confidence 9999862 22211 2234566666663 334678999999999999999988 55556665546778889999998
Q ss_pred --cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeee
Q 017601 254 --NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLG 330 (369)
Q Consensus 254 --~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~ 330 (369)
+|.+++.+|.|.+||+....+.+.+. .| ..+...|+|+|.+..+|++.|+|..|.+||.+..+....+.-......
T Consensus 177 r~lL~~asd~G~VtlwDv~g~sp~~~~~~~H-sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plst 255 (673)
T KOG4378|consen 177 RFLLSIASDKGAVTLWDVQGMSPIFHASEAH-SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLST 255 (673)
T ss_pred ceeeEeeccCCeEEEEeccCCCcccchhhhc-cCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcce
Confidence 88999999999999999888877654 67 999999999998889999999999999999998766666654443345
Q ss_pred eeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 331 FSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 331 ~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
+...++|.+|+.|+..|.|+.||++..+.++..+..|.
T Consensus 256 vaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 256 VAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred eeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence 55566999999999999999999999887776665543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=165.06 Aligned_cols=250 Identities=18% Similarity=0.163 Sum_probs=184.5
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC--CceeE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS--QWSMA 164 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~--~~~~~ 164 (369)
..+.-+-.|.+|+.||+ ++.||++|.-|+++++++..... ...+..|+. .+.++.|+-. ...++
T Consensus 454 s~~d~r~G~R~~~vSp~----gqhLAsGDr~GnlrVy~Lq~l~~-----~~~~eAHes-----EilcLeyS~p~~~~kLL 519 (1080)
T KOG1408|consen 454 STCDSRFGFRALAVSPD----GQHLASGDRGGNLRVYDLQELEY-----TCFMEAHES-----EILCLEYSFPVLTNKLL 519 (1080)
T ss_pred hhcCcccceEEEEECCC----cceecccCccCceEEEEehhhhh-----hhheecccc-----eeEEEeecCchhhhHhh
Confidence 34667788999999998 48999999999999999985411 112333433 3557777642 23567
Q ss_pred EEEecccceEEEEeCCcceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC---
Q 017601 165 AVARSFSKSIDVYDQDIHLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV--- 240 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~--- 240 (369)
|++ +.|.-|.+||.......++++. |...++.+.+...+- .-.+++++.|..+.+--.+....+... ..++.
T Consensus 520 ASa-srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl-n~~MiscGADksimFr~~qk~~~g~~f--~r~t~t~~ 595 (1080)
T KOG1408|consen 520 ASA-SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL-NRKMISCGADKSIMFRVNQKASSGRLF--PRHTQTLS 595 (1080)
T ss_pred hhc-cCCceEEEEecccccchhhhhcccccceeEEEEeecCC-ceEEEeccCchhhheehhccccCceec--cccccccc
Confidence 887 9999999999976544444433 344444433322111 247999999987654433322111111 11111
Q ss_pred CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccc---cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 241 GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVH---CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~---h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
...+|.++..|.. ++++++.|+.|+|||+.+++....|++ | .+...-+...| .|.|+++...|+++.++|.-++
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~-eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH-EGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC-CCceEEEEECC-CccEEEEeecCCceEEEEeccc
Confidence 3679999999999 999999999999999999999999985 4 56788899999 9999999999999999999999
Q ss_pred ceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 317 SKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 317 ~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
+|+....||+.. .++...+|-+.|++.+.||.|+||.+..
T Consensus 674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 999999999843 3455577889999999999999999853
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=148.36 Aligned_cols=231 Identities=13% Similarity=0.124 Sum_probs=162.3
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCc-eeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQW-SMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~~a~ 166 (369)
...|.+.|-+++|+.|+ ..+++++.++.+.+||+..+ + ...+..|+.++ ..+.|-+... ..|++
T Consensus 68 ~~~~~~PvL~v~Wsddg----skVf~g~~Dk~~k~wDL~S~-Q-----~~~v~~Hd~pv-----kt~~wv~~~~~~cl~T 132 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDG----SKVFSGGCDKQAKLWDLASG-Q-----VSQVAAHDAPV-----KTCHWVPGMNYQCLVT 132 (347)
T ss_pred hhccCCCeEEEEEccCC----ceEEeeccCCceEEEEccCC-C-----eeeeeecccce-----eEEEEecCCCcceeEe
Confidence 56799999999999884 68888999999999999865 1 23344455443 3566655222 36677
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+ |+|++|+.||...... +....-|..+-.... ....++.+..+..|.+|+++.+. ...++...+..-.+.|
T Consensus 133 G-SWDKTlKfWD~R~~~p-v~t~~LPeRvYa~Dv-----~~pm~vVata~r~i~vynL~n~~--te~k~~~SpLk~Q~R~ 203 (347)
T KOG0647|consen 133 G-SWDKTLKFWDTRSSNP-VATLQLPERVYAADV-----LYPMAVVATAERHIAVYNLENPP--TEFKRIESPLKWQTRC 203 (347)
T ss_pred c-ccccceeecccCCCCe-eeeeeccceeeehhc-----cCceeEEEecCCcEEEEEcCCCc--chhhhhcCcccceeeE
Confidence 7 9999999999863322 222233333322221 12356667788999999998763 2333333222467899
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCCCc--eeeeecccccc---------CceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPRRW--SALSRWVHCSK---------YEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~~~--~~~~~~~~h~~---------~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
|+..++. ..|.|+-.|.+.+..+..+ +.-.+|+-| + +.|++|+|+| .-..|+++|.||++.+||-.
T Consensus 204 va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCH-R~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 204 VACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCH-RSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EEEEecCCceEeeeecceEEEEecCCCCccCceeEEEe-ccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecch
Confidence 9988888 8899999999999887765 444566666 4 3588999999 77789999999999999988
Q ss_pred CCceeEEEEcCCCeeeeeEcC---CCCEEE-EEeCC
Q 017601 315 ESSKVFAFRGDSNWLGFSKCS---NRDVLG-GWSDS 346 (369)
Q Consensus 315 ~~~~~~~~~g~~~~~~~~~~~---d~~~l~-sgs~d 346 (369)
....++....|. ..+..|. +|.++| ..+.|
T Consensus 282 ar~kLk~s~~~~--qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 282 ARTKLKTSETHP--QPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred hhhhhhccCcCC--CccceeEecCCCCEEEEEeecc
Confidence 777777777777 6666654 777655 44444
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=150.87 Aligned_cols=254 Identities=18% Similarity=0.172 Sum_probs=170.4
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCC--ccccccccCCCC-CCCCCC-eeEEEEC-------CCCcee
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDV--DRLTYSVLPQDC-GVGEGS-WSGLCFS-------PSQWSM 163 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~-~~~l~~~-------p~~~~~ 163 (369)
.....||||+ ..+.+-+.+-.+.+|++-...-.- +...+ +.-+.. ..-+++ +...+|- | ...+
T Consensus 52 ~kgckWSPDG----SciL~~sedn~l~~~nlP~dlys~~~~~~~~-~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l 125 (406)
T KOG2919|consen 52 LKGCKWSPDG----SCILSLSEDNCLNCWNLPFDLYSKKADGPLN-FSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNL 125 (406)
T ss_pred hccceeCCCC----ceEEeecccCeeeEEecChhhcccCCCCccc-cccceeEEeccCCEEEEEEeeeccccCCC-ccce
Confidence 3577899995 455555666678899876431100 00000 000000 000111 2344443 3 3457
Q ss_pred EEEEecccceEEEEeC--CcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeC-CcccCCceee-eeec-
Q 017601 164 AAVARSFSKSIDVYDQ--DIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDL-RMKENGGCLH-RICG- 238 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~-~~~~~~~~~~-~~~~- 238 (369)
+|++ +.+.-|++||. ++...+++...+...+....+..|+|||.+|++ +....|++||+ |.+. ...+. ++..
T Consensus 126 ~a~s-sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr-~c~vy~t~~~~ 202 (406)
T KOG2919|consen 126 FAVS-SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGR-DCPVYTTVTKG 202 (406)
T ss_pred eeec-cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCC-CCcchhhhhcc
Confidence 7777 89999999996 344445555555554444445556777766555 67789999999 5442 22222 2222
Q ss_pred c--CCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC-CCeEEEEEC
Q 017601 239 S--VGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV-DYEVFCGQW 313 (369)
Q Consensus 239 ~--~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~ 313 (369)
. ..+.|.+++|+|.. .+|.|+.-.++-||.-....++..+-+| ++.|+.+.|.+ +|+.|.+|+. |-.|.+||+
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCE-DGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEecc-CcCeecccccCCCeEEEEee
Confidence 1 03678999999988 8999999999999988889999999999 99999999999 9999999987 779999999
Q ss_pred cCC-ceeEEEEcCC---Ce-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 314 RES-SKVFAFRGDS---NW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 314 ~~~-~~~~~~~g~~---~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.. ..+..+..|. +- .-+.--+++++|++|+.||.|++||++.-.+
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 973 4455555443 10 1122245899999999999999999998444
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=157.10 Aligned_cols=254 Identities=14% Similarity=0.112 Sum_probs=166.9
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
.....|.+.|..+.|.|. ...|.+.+.+-+++.||+.+.. +.+.. ...+|. +.+-++||.|.++..|+
T Consensus 94 k~~~aH~nAifDl~wapg----e~~lVsasGDsT~r~Wdvk~s~--l~G~~-~~~GH~-----~SvkS~cf~~~n~~vF~ 161 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPG----ESLLVSASGDSTIRPWDVKTSR--LVGGR-LNLGHT-----GSVKSECFMPTNPAVFC 161 (720)
T ss_pred cccccccceeEeeccCCC----ceeEEEccCCceeeeeeeccce--eecce-eecccc-----cccchhhhccCCCccee
Confidence 345689999999999994 3677777777799999998652 22211 112222 23457999999999999
Q ss_pred EEecccceEEEEeCCcce----------------------EEE----Eeee-CCc---c---eeeeccCCCCCCCCcEEE
Q 017601 166 VARSFSKSIDVYDQDIHL----------------------RTL----RTLW-YPS---S---LNFVQNLSPVNGGPNMLA 212 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~----------------------~~~----~~~~-~~~---~---v~~~~~~~~~~~~~~lla 212 (369)
+| +.|+.|.|||..... +.+ +... +.. . +.++ .|+..|++
T Consensus 162 tG-gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f------kDe~tlaS 234 (720)
T KOG0321|consen 162 TG-GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF------KDESTLAS 234 (720)
T ss_pred ec-cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE------eccceeee
Confidence 98 999999999963100 000 0000 000 0 2222 25678888
Q ss_pred EEc-CCeEEEEeCCcccCC---ceeeeeeccC----CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC--ceeeeecccc
Q 017601 213 VTE-GCQLTIWDLRMKENG---GCLHRICGSV----GDILYAVCSSSTG-NIAVAGADRTVTIYDPRR--WSALSRWVHC 281 (369)
Q Consensus 213 ~s~-d~~v~iwD~~~~~~~---~~~~~~~~~~----~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~--~~~~~~~~~h 281 (369)
++. |+.|++||+|..... ++......++ ...+.++.....| +|.+...|++|.+||+++ -.++..+.++
T Consensus 235 aga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~ 314 (720)
T KOG0321|consen 235 AGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK 314 (720)
T ss_pred ccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc
Confidence 876 999999999976221 1111111110 2346777777888 555555599999999987 4556677777
Q ss_pred ccCceE-EEEEcCCCCCEEEEEECCCeEEEEECcCC-ceeEEEEcCCCeeeeeE---cC-CCCEEEEEeCCCcEEEEECC
Q 017601 282 SKYEIT-GLSFSSIDSNYIYVQGVDYEVFCGQWRES-SKVFAFRGDSNWLGFSK---CS-NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 282 ~~~~v~-~l~~sp~d~~~l~s~s~D~~i~vwd~~~~-~~~~~~~g~~~~~~~~~---~~-d~~~l~sgs~dg~I~iWd~~ 355 (369)
....++ .-..+| |+.+|+||+.|...++|.+... .....+.||. ..+.. ++ .-.-++++++|-+++||++.
T Consensus 315 ~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght--~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 315 LNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT--REVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred ccceeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcc--eEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 333322 224688 9999999999999999999874 3455667887 33332 33 33345666999999999997
Q ss_pred CCcchh
Q 017601 356 AKENEI 361 (369)
Q Consensus 356 ~~~~~~ 361 (369)
.+-+++
T Consensus 392 ~~l~e~ 397 (720)
T KOG0321|consen 392 NGLEEI 397 (720)
T ss_pred Cchhhc
Confidence 765443
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=157.06 Aligned_cols=186 Identities=16% Similarity=0.144 Sum_probs=141.8
Q ss_pred ceeEEEEecccceEEEEeCCcc--e---EEEE----------------eeeCCcceeeeccCCCCCCCCcEEEEEcCCeE
Q 017601 161 WSMAAVARSFSKSIDVYDQDIH--L---RTLR----------------TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQL 219 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~~--~---~~~~----------------~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v 219 (369)
++++|+| ..|..|.|||++.. + ..+. ...|...+-++.+.. .-.+.|+++|.|.+|
T Consensus 192 gNyvAiG-tmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~--~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 192 GNYVAIG-TMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR--NFRNVLASGSADKTV 268 (463)
T ss_pred cceEEEe-ccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc--ccceeEEecCCCceE
Confidence 4688998 89999999997521 1 1110 001222222333211 113467778999999
Q ss_pred EEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCcee-eeeccccccCceEEEEEcCCCC
Q 017601 220 TIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSA-LSRWVHCSKYEITGLSFSSIDS 296 (369)
Q Consensus 220 ~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~-~~~~~~h~~~~v~~l~~sp~d~ 296 (369)
++||+.++ ++...+.++ ++.|.++.|+|.. .|++|+.|++|+|.|.|.... -..|+- .+.|-.++|.|+..
T Consensus 269 ~lWD~~~g---~p~~s~~~~-~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 269 KLWDVDTG---KPKSSITHH-GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDPHSE 342 (463)
T ss_pred EEEEcCCC---Ccceehhhc-CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEecCCCc
Confidence 99999999 899999877 8999999999998 999999999999999996332 233442 47799999999888
Q ss_pred CEEEEEECCCeEEEEECcC-CceeEEEEcCCCeeeeeE---cC-CCCEEEEEeCCCcEEEEECCCC
Q 017601 297 NYIYVQGVDYEVFCGQWRE-SSKVFAFRGDSNWLGFSK---CS-NRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 297 ~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~~~~~~~---~~-d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
..++++..||+++-+|+|. ++++.++..|. ..+.. .. ...+++++|.|+.|++|++...
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd--~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD--DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEEecc--CCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 8889999999999999998 58999999997 44444 22 6778999999999999998654
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=145.23 Aligned_cols=217 Identities=17% Similarity=0.136 Sum_probs=153.1
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 163 (369)
.+.++.+|.+.|+.++|.... -+.+|||++-+|+|.+|+.+.+.- ...+.... .+..+.+++|.|.+-++
T Consensus 48 ll~~L~Gh~GPVwqv~wahPk--~G~iLAScsYDgkVIiWke~~g~w---~k~~e~~~-----h~~SVNsV~wapheygl 117 (299)
T KOG1332|consen 48 LLAELTGHSGPVWKVAWAHPK--FGTILASCSYDGKVIIWKEENGRW---TKAYEHAA-----HSASVNSVAWAPHEYGL 117 (299)
T ss_pred eeeEecCCCCCeeEEeecccc--cCcEeeEeecCceEEEEecCCCch---hhhhhhhh-----hcccceeecccccccce
Confidence 455688999999999997643 357999999999999999886521 11122222 23456789999987666
Q ss_pred EEEEecccceEEEEeCCcc----eEEEEeeeCCcceeeeccCCCCCCC-----------CcEEEEEcCCeEEEEeCCccc
Q 017601 164 AAVARSFSKSIDVYDQDIH----LRTLRTLWYPSSLNFVQNLSPVNGG-----------PNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~-----------~~lla~s~d~~v~iwD~~~~~ 228 (369)
++.|++.||.|.|++.+.. ...+ ...|+..++.+.+.|....| .+|++++-|+.|+||+...+
T Consensus 118 ~LacasSDG~vsvl~~~~~g~w~t~ki-~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~- 195 (299)
T KOG1332|consen 118 LLACASSDGKVSVLTYDSSGGWTTSKI-VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD- 195 (299)
T ss_pred EEEEeeCCCcEEEEEEcCCCCccchhh-hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-
Confidence 6555599999999976422 1111 11233334444443332211 46999999999999999875
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-----cEEEEeCCCcEEEEeCCCc--eeeee-ccccccCceEEEEEcCCCCCEEE
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-----NIAVAGADRTVTIYDPRRW--SALSR-WVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-----~lasgs~D~~v~vwD~~~~--~~~~~-~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
+-..-.++..| .+.|..++|.|.- .||++|.||+|.||-.+.. +-..+ ++.- ...+..+.||+ .|+.|+
T Consensus 196 ~w~~e~~l~~H-~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f-~~~~w~vSWS~-sGn~La 272 (299)
T KOG1332|consen 196 SWKLERTLEGH-KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF-PDVVWRVSWSL-SGNILA 272 (299)
T ss_pred chhhhhhhhhc-chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC-CcceEEEEEec-cccEEE
Confidence 22333457766 7999999999974 8999999999999986631 11112 2223 56799999999 999999
Q ss_pred EEECCCeEEEEECcC
Q 017601 301 VQGVDYEVFCGQWRE 315 (369)
Q Consensus 301 s~s~D~~i~vwd~~~ 315 (369)
.++.|+.|.+|--..
T Consensus 273 Vs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 273 VSGGDNKVTLWKENV 287 (299)
T ss_pred EecCCcEEEEEEeCC
Confidence 999999999997543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-18 Score=159.08 Aligned_cols=259 Identities=18% Similarity=0.176 Sum_probs=166.4
Q ss_pred EEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc-cccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEE
Q 017601 98 IALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL-TYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDV 176 (369)
Q Consensus 98 l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~l 176 (369)
..|++-. ....+||.++.+|.|.++|.....-..+.. -+....|.. .+-.++|-| ++..|+++ +.|.++++
T Consensus 55 ~sFs~~~-n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n-----AifDl~wap-ge~~lVsa-sGDsT~r~ 126 (720)
T KOG0321|consen 55 DSFSAAP-NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN-----AIFDLKWAP-GESLLVSA-SGDSTIRP 126 (720)
T ss_pred ccccCCC-CccceEEEecCCCceeeecchhhhcchhhhhhcccccccc-----eeEeeccCC-CceeEEEc-cCCceeee
Confidence 4555431 234799999999999999987542221111 122233433 244789999 78888888 89999999
Q ss_pred EeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc---------------CC--ceee---
Q 017601 177 YDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE---------------NG--GCLH--- 234 (369)
Q Consensus 177 wd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~---------------~~--~~~~--- 234 (369)
||+.. ++..--...|...+....+.+.++ ..|++++.||.|.|||+|... +. .+.+
T Consensus 127 Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~--~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 127 WDVKTSRLVGGRLNLGHTGSVKSECFMPTNP--AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeccceeecceeecccccccchhhhccCCC--cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 99863 222211223444444444334433 477788999999999998431 00 0110
Q ss_pred ----eeeccCCCcEEE---EEECCCC-cEEEEeC-CCcEEEEeCCCceeeee--------ccccc--cCceEEEEEcCCC
Q 017601 235 ----RICGSVGDILYA---VCSSSTG-NIAVAGA-DRTVTIYDPRRWSALSR--------WVHCS--KYEITGLSFSSID 295 (369)
Q Consensus 235 ----~~~~~~~~~v~~---v~~sp~g-~lasgs~-D~~v~vwD~~~~~~~~~--------~~~h~--~~~v~~l~~sp~d 295 (369)
....+ ...|.+ +-+..|. .||+++. |+.|+|||+|+...... +.-|. ...++++.... .
T Consensus 205 kr~~k~kA~-s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-s 282 (720)
T KOG0321|consen 205 KRIRKWKAA-SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-S 282 (720)
T ss_pred ccccccccc-cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-C
Confidence 00001 123433 3445566 9999887 99999999998543322 11221 12466777766 7
Q ss_pred CCEEEEEECCCeEEEEECcC--CceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 296 SNYIYVQGVDYEVFCGQWRE--SSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~--~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
|.+|.+.+.|+.|++||+.. -...+.|.|+.+-.-..+ ++|+.+|++|+.|...++|.+.+.+.....+.||.
T Consensus 283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght 360 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT 360 (720)
T ss_pred CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcc
Confidence 78888888899999999987 346667777653211111 55999999999999999999999887777777763
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-19 Score=156.04 Aligned_cols=195 Identities=14% Similarity=0.167 Sum_probs=145.2
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEE-----
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIW----- 222 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iw----- 222 (369)
|+.+++=+|.....+|++ +.||.|+|||+.. +.+++....+ -+.-+.. +...++++++|.+|+.|
T Consensus 68 GV~~lakhp~~ls~~aSG-s~DG~VkiWnlsqR~~~~~f~AH~G--~V~Gi~v-----~~~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASG-SCDGEVKIWNLSQRECIRTFKAHEG--LVRGICV-----TQTSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred ccchhhcCcchhhhhhcc-ccCceEEEEehhhhhhhheeecccC--ceeeEEe-----cccceEEecCCcceeeeeccCC
Confidence 355788899666778888 9999999999864 3344332221 1111110 01355566666555555
Q ss_pred ---------------------------------eCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEE
Q 017601 223 ---------------------------------DLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIY 267 (369)
Q Consensus 223 ---------------------------------D~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vw 267 (369)
|.+.. .++..+.-. ...|.++.|+|.. .|++++.|++|.||
T Consensus 140 p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~---~Pv~smswG-~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 140 PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRD---NPVSSMSWG-ADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred cceeeeccccccccccccccccccccCceeeecccccC---CccceeecC-CCceeEEecCCCcchheeeeccCCceEEE
Confidence 44333 455555533 4779999999998 89999999999999
Q ss_pred eCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCCCe-eeeeEcCCCCEEEEEeC
Q 017601 268 DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDSNW-LGFSKCSNRDVLGGWSD 345 (369)
Q Consensus 268 D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~ 345 (369)
|+|..++++.+.- +-.-+.++|+| .+-.+++++.|..++.+|++. .+.+..+.+|.+. +.+..+|.|+-++|||.
T Consensus 216 D~R~~~Pl~KVi~--~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 216 DLRQASPLKKVIL--TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred ecccCCccceeee--eccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence 9999999987763 35678999999 999999999999999999987 6788889999832 34444789999999999
Q ss_pred CCcEEEEECCCCcc
Q 017601 346 SGSIFVADVVAKEN 359 (369)
Q Consensus 346 dg~I~iWd~~~~~~ 359 (369)
|.+|+||.+..+..
T Consensus 293 DksIRIf~~~~~~S 306 (433)
T KOG0268|consen 293 DKSIRIFPVNHGHS 306 (433)
T ss_pred cceEEEeecCCCcc
Confidence 99999999987653
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=159.18 Aligned_cols=199 Identities=16% Similarity=0.195 Sum_probs=145.5
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcceEEE--EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTL--RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
++.+.++.. ...+.+| .-+.|+|||+....... ..+..-..=+|+......+|+..|+.+++-.++.|||+....
T Consensus 422 VcAvtIS~~-trhVyTg--GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT 498 (705)
T KOG0639|consen 422 VCAVTISNP-TRHVYTG--GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT 498 (705)
T ss_pred EEEEEecCC-cceeEec--CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCC
Confidence 556677652 3345554 46899999986432111 111111122343333344688999999999999999998762
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
......+... .-.-++++.|||. ..+++..||.|.|||+++...++.|+|| .+.+.+|.+++ ||..|-+|+.|++
T Consensus 499 -prikaeltss-apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGh-tDGascIdis~-dGtklWTGGlDnt 574 (705)
T KOG0639|consen 499 -PRIKAELTSS-APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TDGASCIDISK-DGTKLWTGGLDNT 574 (705)
T ss_pred -cchhhhcCCc-chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCC-CCCceeEEecC-CCceeecCCCccc
Confidence 1111222222 3456889999999 7788888999999999999999999999 99999999999 9999999999999
Q ss_pred EEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 308 VFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
||.||+++++.+..+.=.+.+.++..||++++|+.|-+++.+.|-....
T Consensus 575 vRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred eeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 9999999987665543233225556689999999999999998876543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-16 Score=142.38 Aligned_cols=225 Identities=14% Similarity=0.062 Sum_probs=150.1
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEE
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTL 186 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~ 186 (369)
.++++...++.+++||+.+... ...+..+. ...+++|+|++..+++++ +.++.|.+||... ....+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~-----~~~~~~~~------~~~~l~~~~dg~~l~~~~-~~~~~v~~~d~~~~~~~~~~ 69 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEV-----TRTFPVGQ------RPRGITLSKDGKLLYVCA-SDSDTIQVIDLATGEVIGTL 69 (300)
T ss_pred cEEEEecCCCEEEEEECCCCce-----EEEEECCC------CCCceEECCCCCEEEEEE-CCCCeEEEEECCCCcEEEec
Confidence 3677778889999999875421 11111111 123699999665445555 7889999999763 22222
Q ss_pred EeeeCCcceeeeccCCCCCCCCcEEEE-EcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC-c
Q 017601 187 RTLWYPSSLNFVQNLSPVNGGPNMLAV-TEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR-T 263 (369)
Q Consensus 187 ~~~~~~~~v~~~~~~~~~~~~~~lla~-s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~-~ 263 (369)
.....+. .+. +++++..++++ +.|+.+++||+++. +.+..+... ..+.+++|+|+| .+++++.++ .
T Consensus 70 ~~~~~~~---~~~---~~~~g~~l~~~~~~~~~l~~~d~~~~---~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 70 PSGPDPE---LFA---LHPNGKILYIANEDDNLVTVIDIETR---KVLAEIPVG--VEPEGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred cCCCCcc---EEE---ECCCCCEEEEEcCCCCeEEEEECCCC---eEEeEeeCC--CCcceEEECCCCCEEEEEecCCCe
Confidence 2211222 222 23456556554 46899999999987 667666644 557889999999 888877765 5
Q ss_pred EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEE-EECCCeEEEEECcCCceeEEEEcCC--------CeeeeeEc
Q 017601 264 VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYV-QGVDYEVFCGQWRESSKVFAFRGDS--------NWLGFSKC 334 (369)
Q Consensus 264 v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s-~s~D~~i~vwd~~~~~~~~~~~g~~--------~~~~~~~~ 334 (369)
+.+||.++++....+... .....++|+| ++++|+. +..|+.|++||+++++.+..+..+. ...++..+
T Consensus 139 ~~~~d~~~~~~~~~~~~~--~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 215 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVLVD--QRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT 215 (300)
T ss_pred EEEEeCCCCeEEEEEEcC--CCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC
Confidence 678899888776654422 3457899999 9998754 4569999999999987766654221 01234446
Q ss_pred CCCCEEE-EEeCCCcEEEEECCCCcc
Q 017601 335 SNRDVLG-GWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 335 ~d~~~l~-sgs~dg~I~iWd~~~~~~ 359 (369)
+++++++ +.+.++.|.+||+++++.
T Consensus 216 ~dg~~~~~~~~~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 216 KDGKTAFVALGPANRVAVVDAKTYEV 241 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 7888754 445677899999987754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-18 Score=170.95 Aligned_cols=212 Identities=12% Similarity=0.133 Sum_probs=166.3
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
.++..|+|.|..|.|++.. ..+|||++++|.|+|||+.+-.. .+..... .....+.+|+|+.....+||
T Consensus 110 a~~~~h~G~V~gLDfN~~q---~nlLASGa~~geI~iWDlnn~~t-----P~~~~~~---~~~~eI~~lsWNrkvqhILA 178 (1049)
T KOG0307|consen 110 ATKSKHTGPVLGLDFNPFQ---GNLLASGADDGEILIWDLNKPET-----PFTPGSQ---APPSEIKCLSWNRKVSHILA 178 (1049)
T ss_pred hhhcccCCceeeeeccccC---CceeeccCCCCcEEEeccCCcCC-----CCCCCCC---CCcccceEeccchhhhHHhh
Confidence 3466899999999999973 57999999999999999986421 1111100 01123568999997777888
Q ss_pred EEecccceEEEEeCCcceEEEEeeeCC--cceeeeccCCCCCCCCcEEEEEcC---CeEEEEeCCcccCCceeeeeeccC
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTLWYP--SSLNFVQNLSPVNGGPNMLAVTEG---CQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~lla~s~d---~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
++ +.++.+-|||+.+....+....++ ..+..+.|+|.. ..+++++++| -.|.+||+|... .+++.+.+|
T Consensus 179 S~-s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~--aTql~~As~dd~~PviqlWDlR~as--sP~k~~~~H- 252 (1049)
T KOG0307|consen 179 SG-SPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH--ATQLLVASGDDSAPVIQLWDLRFAS--SPLKILEGH- 252 (1049)
T ss_pred cc-CCCCCceeccccCCCcccccccCCCccceeeeeeCCCC--ceeeeeecCCCCCceeEeecccccC--Cchhhhccc-
Confidence 88 899999999997653333332222 345666776633 3567776654 379999999764 677888777
Q ss_pred CCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 241 GDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 241 ~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
...|.++.|.+.+ +|++++.|+.|.+|+..+++.+.++... .+.+..+.|+|.++..++.++.||.|-|+.+..
T Consensus 253 ~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 253 QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC-CcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 7889999999988 8999999999999999999999999987 889999999998899999999999999999876
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=149.55 Aligned_cols=220 Identities=17% Similarity=0.227 Sum_probs=161.2
Q ss_pred CcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCC--cceEEEE-eeeCCcc
Q 017601 118 GHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLR-TLWYPSS 194 (369)
Q Consensus 118 g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~-~~~~~~~ 194 (369)
-.+.+|.+.+... ...+.+-| +.+.+++-+|. +.+++.+ ...+.+.+|.+. ..+..+. .++..++
T Consensus 61 p~l~vw~i~k~~~---~~q~~v~P-------g~v~al~s~n~-G~~l~ag-~i~g~lYlWelssG~LL~v~~aHYQ~ITc 128 (476)
T KOG0646|consen 61 PLLHVWEILKKDQ---VVQYIVLP-------GPVHALASSNL-GYFLLAG-TISGNLYLWELSSGILLNVLSAHYQSITC 128 (476)
T ss_pred ccccccccCchhh---hhhhcccc-------cceeeeecCCC-ceEEEee-cccCcEEEEEeccccHHHHHHhhccceeE
Confidence 3778888875422 11233322 23557888884 4444433 588999999874 3332221 1223344
Q ss_pred eeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc------cCCceeeeeeccCCCcEEEEEECCCC---cEEEEeCCCcEE
Q 017601 195 LNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK------ENGGCLHRICGSVGDILYAVCSSSTG---NIAVAGADRTVT 265 (369)
Q Consensus 195 v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~------~~~~~~~~~~~~~~~~v~~v~~sp~g---~lasgs~D~~v~ 265 (369)
+.|. .|+..|+++|.||.|.+|++..- ...++++.+.+| +-+|+.+...+.| +|+++|.|++++
T Consensus 129 L~fs------~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-tlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 129 LKFS------DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-TLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred EEEe------CCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC-cceeEEEEecCCCccceEEEecCCceEE
Confidence 4444 36889999999999999987421 123677778877 7899999887765 999999999999
Q ss_pred EEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC----------------CceeEEEEcCCCee
Q 017601 266 IYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE----------------SSKVFAFRGDSNWL 329 (369)
Q Consensus 266 vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~----------------~~~~~~~~g~~~~~ 329 (369)
+||+..+..+.++.- ...+.+++..| .++.++.|+.||.|.+.++.. +..+..+.||.+-.
T Consensus 202 ~wdlS~g~LLlti~f--p~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITF--PSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred EEEeccceeeEEEec--CCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 999999999888774 47899999999 899999999999999988754 23566677888422
Q ss_pred eeeE---cCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 330 GFSK---CSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 330 ~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.++. +.||.+|++|++||.|.|||+.+.+.
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 4444 55999999999999999999988764
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=135.38 Aligned_cols=192 Identities=13% Similarity=0.024 Sum_probs=148.8
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeC--CcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQ--DIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
++-+.++.+++ +|.+| +.|.+..+|-. +..+-++. .|...+-.+. .+.+...+++++.|.+++|||+.++
T Consensus 13 lTqiKyN~eGD-LlFsc-aKD~~~~vw~s~nGerlGty~--GHtGavW~~D---id~~s~~liTGSAD~t~kLWDv~tG- 84 (327)
T KOG0643|consen 13 LTQIKYNREGD-LLFSC-AKDSTPTVWYSLNGERLGTYD--GHTGAVWCCD---IDWDSKHLITGSADQTAKLWDVETG- 84 (327)
T ss_pred cceEEecCCCc-EEEEe-cCCCCceEEEecCCceeeeec--CCCceEEEEE---ecCCcceeeeccccceeEEEEcCCC-
Confidence 34689998554 66777 89999999943 34443332 2444444443 2234578999999999999999999
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEe-----CCCcEEEEeCC-------CceeeeeccccccCceEEEEEcCCC
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAG-----ADRTVTIYDPR-------RWSALSRWVHCSKYEITGLSFSSID 295 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs-----~D~~v~vwD~~-------~~~~~~~~~~h~~~~v~~l~~sp~d 295 (369)
+++..+... .+|..+.|+++| +++... ..+.|.++|++ ..++...+..+ .+.++.+-|+| -
T Consensus 85 --k~la~~k~~--~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~Wg~-l 158 (327)
T KOG0643|consen 85 --KQLATWKTN--SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSALWGP-L 158 (327)
T ss_pred --cEEEEeecC--CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeeeecc-c
Confidence 899998876 999999999999 433332 24579999999 45678888888 89999999999 9
Q ss_pred CCEEEEEECCCeEEEEECcCC-ceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 296 SNYIYVQGVDYEVFCGQWRES-SKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~~-~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+.+|++|..||.|..||++++ +.+..-+-|+ ..+.. ++|..+++++|.|.+-++||+.+-+
T Consensus 159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~--~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 159 GETIIAGHEDGSISIYDARTGKELVDSDEEHS--SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred CCEEEEecCCCcEEEEEcccCceeeechhhhc--cccccccccCCcceEEecccCccceeeecccee
Confidence 999999999999999999997 4455556666 33433 5699999999999999999998754
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=138.20 Aligned_cols=207 Identities=16% Similarity=0.154 Sum_probs=150.0
Q ss_pred CCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 148 EGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 148 ~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
.+.+++||.+. -++|++ |.|-+|+|||..+..+.-....|...++.+.+.+... .+.|+++++||.|.+||...-
T Consensus 43 ~~sitavAVs~---~~~aSG-ssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S-~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 43 AGSITALAVSG---PYVASG-SSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS-KSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccceeEEEecc---eeEecc-CCCCcEEEEeccchhhhcceeccccceEEEEecCCcc-hhheeeecCCCcEEEEEcCCe
Confidence 45577899865 467777 9999999999986655444455555565555432111 248999999999999999888
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCC
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY 306 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~ 306 (369)
.++..++.| .+.|+.++.+|.| +-++-+.|+++++||+-+|+....+.- +..-+.|.|+| .|.+++.++.+
T Consensus 118 ---~~~~slK~H-~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--~~~at~v~w~~-~Gd~F~v~~~~- 189 (362)
T KOG0294|consen 118 ---ELLKSLKAH-KGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL--KNKATLVSWSP-QGDHFVVSGRN- 189 (362)
T ss_pred ---EEeeeeccc-ccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc--CCcceeeEEcC-CCCEEEEEecc-
Confidence 788899877 6779999999999 667778899999999998877665542 23345599999 99988777654
Q ss_pred eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCCC
Q 017601 307 EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLVN 369 (369)
Q Consensus 307 ~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~~ 369 (369)
.|-+|.+.+......+.-..+..+ ..+-++..|++|.+|+.|.+||.... .....+.+|.|
T Consensus 190 ~i~i~q~d~A~v~~~i~~~~r~l~-~~~l~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~ 250 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENPKRILC-ATFLDGSELLVGGDNEWISLKDTDSD-TPLTEFLAHEN 250 (362)
T ss_pred EEEEEecccHhHhhhhhcccccee-eeecCCceEEEecCCceEEEeccCCC-ccceeeecchh
Confidence 688999887554444322221111 11338899999999999999998764 34555666654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=142.47 Aligned_cols=195 Identities=14% Similarity=0.175 Sum_probs=146.8
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcc--eE----EE-EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEe
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH--LR----TL-RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWD 223 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~--~~----~~-~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD 223 (369)
+..++|+|.++..||+| |.|.+|.||++... .+ .. ....|...+..++|+|..+ +.|++++.|.+|.|||
T Consensus 84 vLDi~w~PfnD~vIASg-SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--NVLlsag~Dn~v~iWn 160 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIASG-SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--NVLLSAGSDNTVSIWN 160 (472)
T ss_pred ccccccCccCCceeecC-CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--hhHhhccCCceEEEEe
Confidence 45799999999999998 99999999987521 11 11 2334667788888888654 6889999999999999
Q ss_pred CCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 224 LRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
+.++ ..+.++.|. +.|++++|+.|| +|++.+.|+.|+|||.|+++.+..-.+|....-..+-|-. ++. +++.
T Consensus 161 v~tg---eali~l~hp--d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~-i~tT 233 (472)
T KOG0303|consen 161 VGTG---EALITLDHP--DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGK-IFTT 233 (472)
T ss_pred ccCC---ceeeecCCC--CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCc-eeee
Confidence 9999 677778766 999999999999 9999999999999999999999988888344556667777 787 4454
Q ss_pred E----CCCeEEEEECcCC-ce--eEEEEcCCCeeeeeE---cCCCCEEE-EEeCCCcEEEEECCCCc
Q 017601 303 G----VDYEVFCGQWRES-SK--VFAFRGDSNWLGFSK---CSNRDVLG-GWSDSGSIFVADVVAKE 358 (369)
Q Consensus 303 s----~D~~i~vwd~~~~-~~--~~~~~g~~~~~~~~~---~~d~~~l~-sgs~dg~I~iWd~~~~~ 358 (369)
+ .++.+-+||..+- +. ...+..-+ ++.. -+|..+|+ +|-.|+.|+.|.+.+..
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSn---Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSN---GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCC---ceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 3 4778999998762 22 22232222 2222 23555544 67779999999986554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.1e-17 Score=145.88 Aligned_cols=199 Identities=21% Similarity=0.263 Sum_probs=153.2
Q ss_pred CCCCeeEEEECCCCceeEEEEecccceEEEEeCC----cceEEEEeeeCCcceeeeccCCCCCCCC-cEEEEEcCCeEEE
Q 017601 147 GEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD----IHLRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTI 221 (369)
Q Consensus 147 ~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~i 221 (369)
..++++++.|+|..+ ++.++ +.|++++||.++ ..++.++....|-....+. |+|. .+++++.-..+..
T Consensus 212 s~~~I~sv~FHp~~p-lllva-G~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~-----p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP-LLLVA-GLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFA-----PNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred CcCCceEEEecCCCc-eEEEe-cCCCcEEEEEecCccChhheeeeeccCccceeeec-----CCCceEEEecccceEEEE
Confidence 456788999999554 66777 899999999764 4556666555553322222 4565 6777777889999
Q ss_pred EeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE
Q 017601 222 WDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 222 wD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
||+.+.+- ..+....+.....+..+..||++ +||..+..|.|.|.-..+++.+.+++- .+.|..+.|+. |++.|+
T Consensus 285 yDle~ak~-~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--eG~v~~~~fsS-dsk~l~ 360 (514)
T KOG2055|consen 285 YDLETAKV-TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--EGVVSDFTFSS-DSKELL 360 (514)
T ss_pred eecccccc-ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--ccEEeeEEEec-CCcEEE
Confidence 99988721 22333333213467778889999 999999999999999999999999884 47899999998 999999
Q ss_pred EEECCCeEEEEECcCCceeEEEEcCCCeeeeeEc--CCCCEEEEEeCCCcEEEEECCC
Q 017601 301 VQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKC--SNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 301 s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~--~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
+++.+|.|.+||++...+++.|.......+...| .++.+||+||..|.|.|||..+
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 9999999999999999999999654433343444 5999999999999999999653
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-16 Score=141.38 Aligned_cols=212 Identities=21% Similarity=0.210 Sum_probs=146.1
Q ss_pred ccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC-C--CCccc---ccc----------------
Q 017601 81 MDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG-K--DVDRL---TYS---------------- 138 (369)
Q Consensus 81 ~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~-~--~~~~~---~~~---------------- 138 (369)
..+.+... .|.+.|.++....++ .|.|+.+|..|..||-.-.. . +++.. ...
T Consensus 277 ~~~~k~~~-aH~ggv~~L~~lr~G-----tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 277 NRISKQVH-AHDGGVFSLCMLRDG-----TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred ceEEeEee-ecCCceEEEEEecCc-----cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 33334334 899999999998874 45559999999999832110 0 11100 000
Q ss_pred -ccC--------CCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCc
Q 017601 139 -VLP--------QDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPN 209 (369)
Q Consensus 139 -~~~--------~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 209 (369)
+++ ...+++++-| +++.+|.+ .+++++ +-|+.++||+-.+...+........++.|. |.+ .
T Consensus 351 iL~Gt~~~~f~~~v~gh~delw-gla~hps~-~q~~T~-gqdk~v~lW~~~k~~wt~~~~d~~~~~~fh------psg-~ 420 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELW-GLATHPSK-NQLLTC-GQDKHVRLWNDHKLEWTKIIEDPAECADFH------PSG-V 420 (626)
T ss_pred EEEeeecCCceEEEEeccccee-eEEcCCCh-hheeec-cCcceEEEccCCceeEEEEecCceeEeecc------Ccc-e
Confidence 000 0112333345 79999954 567787 899999999955555554333222233332 334 7
Q ss_pred EEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceE
Q 017601 210 MLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEIT 287 (369)
Q Consensus 210 lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~ 287 (369)
++.++..|...+.|..+. ..+. +... +.++++++|+|+| .||.|+.|+.|.||-+.. +........|+..+|+
T Consensus 421 va~Gt~~G~w~V~d~e~~---~lv~-~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it 495 (626)
T KOG2106|consen 421 VAVGTATGRWFVLDTETQ---DLVT-IHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT 495 (626)
T ss_pred EEEeeccceEEEEecccc---eeEE-EEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence 777888999999999875 4443 3322 5899999999999 999999999999998765 5555555545468999
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
.+.||+ |+++|.+.|.|..|.+|...
T Consensus 496 hLDwS~-Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 496 HLDWSS-DSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EeeecC-CCceEEeccCceEEEEEccc
Confidence 999999 99999999999999999543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-16 Score=153.46 Aligned_cols=230 Identities=12% Similarity=0.110 Sum_probs=170.8
Q ss_pred EEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcce--EEEE
Q 017601 110 VLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL--RTLR 187 (369)
Q Consensus 110 ~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~--~~~~ 187 (369)
+++.--.+-.++.|+...... + .+.+.+..-..-.....+++.++ -++....| +..|+|.+|+....+ .++.
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~---G-~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG-~S~G~Id~fNmQSGi~r~sf~ 487 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTS---G-RHVLDPKRFKKDDINATAVCVSF-CGNFVFIG-YSKGTIDRFNMQSGIHRKSFG 487 (910)
T ss_pred eeEEecCcceEEEEeccCccc---c-cEEecCccccccCcceEEEEEec-cCceEEEe-ccCCeEEEEEcccCeeecccc
Confidence 444444455677888875421 1 22222221111123356788887 44455555 788999999975332 2221
Q ss_pred -eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEE
Q 017601 188 -TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVT 265 (369)
Q Consensus 188 -~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~ 265 (369)
...|...+.-+.. +.-+..+++++.+|-+++||.... ..+..+... ..+.++..+-.. .+|.+..|-.|.
T Consensus 488 ~~~ah~~~V~gla~---D~~n~~~vsa~~~Gilkfw~f~~k---~l~~~l~l~--~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 488 DSPAHKGEVTGLAV---DGTNRLLVSAGADGILKFWDFKKK---VLKKSLRLG--SSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred cCccccCceeEEEe---cCCCceEEEccCcceEEEEecCCc---ceeeeeccC--CCcceeeeeehhhhhhhhcCceeEE
Confidence 1224445554442 112356889999999999999987 566666655 788888888888 999999999999
Q ss_pred EEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeC
Q 017601 266 IYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSD 345 (369)
Q Consensus 266 vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~ 345 (369)
++|+.+.+.++.|.|| .+.|++++||| ||+.|+++++|++||+||+.++.++-.+.-......+..+|+|++||+...
T Consensus 560 vvD~~t~kvvR~f~gh-~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGH-GNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred EEEchhhhhhHHhhcc-ccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEe
Confidence 9999999999999999 99999999999 999999999999999999999999998877665567777899999999999
Q ss_pred C-CcEEEEECC
Q 017601 346 S-GSIFVADVV 355 (369)
Q Consensus 346 d-g~I~iWd~~ 355 (369)
| .-|++|--+
T Consensus 638 d~~gIylWsNk 648 (910)
T KOG1539|consen 638 DQNGIYLWSNK 648 (910)
T ss_pred cCceEEEEEch
Confidence 9 789999643
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-16 Score=143.21 Aligned_cols=252 Identities=15% Similarity=0.128 Sum_probs=170.0
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+-..+|.+.|.+|.|+|.+ ...+.+.+.+|.++.-|+...-. ..-+... ..+.+++++.|+..+...++
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n---~s~i~ssSyDGtiR~~D~~~~i~---e~v~s~~-----~d~~~fs~~d~~~e~~~vl~ 296 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPAN---TSQIYSSSYDGTIRLQDFEGNIS---EEVLSLD-----TDNIWFSSLDFSAESRSVLF 296 (498)
T ss_pred EEeccCCccccceEecCCC---hhheeeeccCceeeeeeecchhh---HHHhhcC-----ccceeeeeccccCCCccEEE
Confidence 3357899999999999975 56788889999999999875421 1011111 11234667889886665555
Q ss_pred EEecccceEEEEeCCcceEEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc--eeeeeeccCCC
Q 017601 166 VARSFSKSIDVYDQDIHLRTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG--CLHRICGSVGD 242 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~--~~~~~~~~~~~ 242 (369)
.. -++ ...+||.......+. ..-|...+..++..|..| ..|+++|-|++++|||+|.-.... .+..+.|. .
T Consensus 297 ~~-~~G-~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p--~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr--r 370 (498)
T KOG4328|consen 297 GD-NVG-NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP--WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR--R 370 (498)
T ss_pred ee-ccc-ceEEEEeecCCccchhhhhhhcccceeecCCCCc--hheeecccCcceeeeehhhhcCCCCcceeccccc--c
Confidence 44 444 888999753222111 111334566666555544 578889999999999999642222 25556555 8
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCC----Cceeeeecccccc----CceEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPR----RWSALSRWVHCSK----YEITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~----~~~~~~~~~~h~~----~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
.|++..|||.+ .|++-+.|..|+|||.. .-.+..++..... -......|.| +..++++|-.-..|-|+|-
T Consensus 371 sV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 371 SVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred eeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC-CccEEEEeccCcceeEEcC
Confidence 99999999999 99999999999999984 3344444432101 1245678999 9999999999999999999
Q ss_pred cCCceeEEEEcCC--CeeeeeE-cCCCC-EEEEEeCCCcEEEEECC
Q 017601 314 RESSKVFAFRGDS--NWLGFSK-CSNRD-VLGGWSDSGSIFVADVV 355 (369)
Q Consensus 314 ~~~~~~~~~~g~~--~~~~~~~-~~d~~-~l~sgs~dg~I~iWd~~ 355 (369)
..++.+..+.+.. ..-++.. -|-+. +++.++..|.|+||--+
T Consensus 450 ~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 450 NGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 8888777764432 0011222 23344 67777788999999654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.6e-16 Score=145.10 Aligned_cols=244 Identities=13% Similarity=0.041 Sum_probs=167.8
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
.+|.++||+.++ ..||.+-.+|.|.+|++...- -....+.. .....+.+++|++ + ..+.+. +.++
T Consensus 26 s~I~slA~s~kS----~~lAvsRt~g~IEiwN~~~~w----~~~~vi~g----~~drsIE~L~W~e-~-~RLFS~-g~sg 90 (691)
T KOG2048|consen 26 SEIVSLAYSHKS----NQLAVSRTDGNIEIWNLSNNW----FLEPVIHG----PEDRSIESLAWAE-G-GRLFSS-GLSG 90 (691)
T ss_pred cceEEEEEeccC----CceeeeccCCcEEEEccCCCc----eeeEEEec----CCCCceeeEEEcc-C-CeEEee-cCCc
Confidence 789999999874 568988999999999997541 11111111 1122355899996 3 456666 7899
Q ss_pred eEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee-eccCCCcEEEEEECC
Q 017601 173 SIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI-CGSVGDILYAVCSSS 251 (369)
Q Consensus 173 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~-~~~~~~~v~~v~~sp 251 (369)
+|.-||+....+..........+-.+. ..|.+..++.+++||.+.+++...+ ...... -....+.|.+++|+|
T Consensus 91 ~i~EwDl~~lk~~~~~d~~gg~IWsia---i~p~~~~l~IgcddGvl~~~s~~p~---~I~~~r~l~rq~sRvLslsw~~ 164 (691)
T KOG2048|consen 91 SITEWDLHTLKQKYNIDSNGGAIWSIA---INPENTILAIGCDDGVLYDFSIGPD---KITYKRSLMRQKSRVLSLSWNP 164 (691)
T ss_pred eEEEEecccCceeEEecCCCcceeEEE---eCCccceEEeecCCceEEEEecCCc---eEEEEeecccccceEEEEEecC
Confidence 999999875544443322222232222 1233344555669997777776654 333221 122148999999999
Q ss_pred CC-cEEEEeCCCcEEEEeCCCceeeeecc----cc---ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 252 TG-NIAVAGADRTVTIYDPRRWSALSRWV----HC---SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 252 ~g-~lasgs~D~~v~vwD~~~~~~~~~~~----~h---~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
++ .|+.|+.||.|++||..++..++... +- ..--|++|.|=. + ..|++|-.-|+|.+||...+.++..+.
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d-~tI~sgDS~G~V~FWd~~~gTLiqS~~ 242 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-D-STIASGDSAGTVTFWDSIFGTLIQSHS 242 (691)
T ss_pred CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-c-CcEEEecCCceEEEEcccCcchhhhhh
Confidence 99 89999999999999999987766211 11 023477887764 4 578999999999999999999988887
Q ss_pred cCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 324 GDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 324 g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.|. ....+...++++.+++++.|+.|.-+...+++.
T Consensus 243 ~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 243 CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 765 113333345789999999999999998887754
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-16 Score=141.50 Aligned_cols=239 Identities=18% Similarity=0.226 Sum_probs=174.0
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
+-.|++.+|.|++ ..++++.+..--++.||+.+....--...+ +..+.++.....+|.+ .+||.. +..
T Consensus 257 ~fPi~~a~f~p~G---~~~i~~s~rrky~ysyDle~ak~~k~~~~~-------g~e~~~~e~FeVShd~-~fia~~-G~~ 324 (514)
T KOG2055|consen 257 KFPIQKAEFAPNG---HSVIFTSGRRKYLYSYDLETAKVTKLKPPY-------GVEEKSMERFEVSHDS-NFIAIA-GNN 324 (514)
T ss_pred cCccceeeecCCC---ceEEEecccceEEEEeeccccccccccCCC-------CcccchhheeEecCCC-CeEEEc-ccC
Confidence 4678999999985 458888888888999999765211101111 1112334457788854 577877 789
Q ss_pred ceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 172 KSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 172 ~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
|.|.|.-.. ..+.+++.......+.|. .|+..|++++.+|.|.+||+++. .+++++.....-.=+++|.
T Consensus 325 G~I~lLhakT~eli~s~KieG~v~~~~fs------Sdsk~l~~~~~~GeV~v~nl~~~---~~~~rf~D~G~v~gts~~~ 395 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFKIEGVVSDFTFS------SDSKELLASGGTGEVYVWNLRQN---SCLHRFVDDGSVHGTSLCI 395 (514)
T ss_pred ceEEeehhhhhhhhheeeeccEEeeEEEe------cCCcEEEEEcCCceEEEEecCCc---ceEEEEeecCccceeeeee
Confidence 999998643 444555444334445554 35788999999999999999998 8999988661233466788
Q ss_pred CCCC-cEEEEeCCCcEEEEeCCC------ceeeeeccccccCceEEEEEcCCCCCEEEEEEC--CCeEEEEECcCCceeE
Q 017601 250 SSTG-NIAVAGADRTVTIYDPRR------WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV--DYEVFCGQWRESSKVF 320 (369)
Q Consensus 250 sp~g-~lasgs~D~~v~vwD~~~------~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~--D~~i~vwd~~~~~~~~ 320 (369)
|++| +||+||..|.|.|||..+ .+++.++..- ...|+++.|+| |.++||-+|. +..+|+--+.......
T Consensus 396 S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~-d~qiLAiaS~~~knalrLVHvPS~TVFs 473 (514)
T KOG2055|consen 396 SLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL-TTAITSLQFNH-DAQILAIASRVKKNALRLVHVPSCTVFS 473 (514)
T ss_pred cCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh-heeeeeeeeCc-chhhhhhhhhccccceEEEeccceeeec
Confidence 9999 999999999999999654 5667777766 78899999999 9999887764 6789988776533322
Q ss_pred EE------EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 321 AF------RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 321 ~~------~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
.| -||. .++..+|.+.++|-|.++|.+.+|.+.
T Consensus 474 NfP~~n~~vg~v--tc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 474 NFPTSNTKVGHV--TCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cCCCCCCcccce--EEEEecCCCceEEeecCCCceeeEeec
Confidence 22 2344 556668899999999999999999874
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-15 Score=146.77 Aligned_cols=198 Identities=18% Similarity=0.200 Sum_probs=142.9
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
|...|.+++-.. ..+++++.++.|.++....+..+--...+.++ ...++|+. ++.++|.+ |.
T Consensus 55 ~g~~v~~ia~~s------~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp----------~r~~~v~g-~g~~iaag-sd 116 (933)
T KOG1274|consen 55 SGELVSSIACYS------NHFLTGSEQNTVLRYKFPSGEEDTILARFTLP----------IRDLAVSG-SGKMIAAG-SD 116 (933)
T ss_pred cCceeEEEeecc------cceEEeeccceEEEeeCCCCCccceeeeeecc----------ceEEEEec-CCcEEEee-cC
Confidence 778888888643 36777788889999888755321101112221 34689988 45677777 99
Q ss_pred cceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC-------C
Q 017601 171 SKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV-------G 241 (369)
Q Consensus 171 d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~-------~ 241 (369)
|-.|++-+... ..+.++. +...+..+.+ +|.+..|++.+-||+|+|||+.++ .+.+++.+-. .
T Consensus 117 D~~vK~~~~~D~s~~~~lrg--h~apVl~l~~---~p~~~fLAvss~dG~v~iw~~~~~---~~~~tl~~v~k~n~~~~s 188 (933)
T KOG1274|consen 117 DTAVKLLNLDDSSQEKVLRG--HDAPVLQLSY---DPKGNFLAVSSCDGKVQIWDLQDG---ILSKTLTGVDKDNEFILS 188 (933)
T ss_pred ceeEEEEeccccchheeecc--cCCceeeeeE---cCCCCEEEEEecCceEEEEEcccc---hhhhhcccCCcccccccc
Confidence 99999998753 3444443 3333444442 345656666778999999999987 5555443210 2
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccc-cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVH-CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~-h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
..+.-++|+|+| .++..+.|+.|++|+...|+....+.. ++...+..+.|+| +|.|||+++.||.|.|||+++
T Consensus 189 ~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 189 RICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEeccc
Confidence 345667999998 999999999999999999999888774 2144599999999 999999999999999999986
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-16 Score=135.79 Aligned_cols=193 Identities=18% Similarity=0.169 Sum_probs=142.4
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCc-------ceEEEEeeeCCcceeeeccCCCCCCCC-cEEEEEcCCeEEE
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI-------HLRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTI 221 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~i 221 (369)
.+++++|+. ++..+|++ +.|++|+|||+.. .++.--...||+.+.|.+ |.. .++++-...++++
T Consensus 88 ~vt~~~FsS-dGK~lat~-~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap------Dc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 88 EVTDVAFSS-DGKKLATI-SGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP------DCKSVVVSVKRGNKLCV 159 (420)
T ss_pred ceeeeEEcC-CCceeEEE-eCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC------CcceEEEEEccCCEEEE
Confidence 467999999 55678988 8999999999752 222222344777777765 344 4455667789999
Q ss_pred EeCCcccCCceeeeeec--------cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEc
Q 017601 222 WDLRMKENGGCLHRICG--------SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFS 292 (369)
Q Consensus 222 wD~~~~~~~~~~~~~~~--------~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~s 292 (369)
|-+...+.++--..+.+ .+...+-.+-..-++ +|++++.|.+|.+||++ |+.+..+... +..-+..+.|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-q~~n~~aavS 237 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-QSSNYDAAVS 237 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-cccccceeeC
Confidence 98765443332222111 102445556555666 99999999999999998 9999888877 6777889999
Q ss_pred CCCCCEEEEEECCCeEEEEECcC--------CceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECC
Q 017601 293 SIDSNYIYVQGVDYEVFCGQWRE--------SSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 293 p~d~~~l~s~s~D~~i~vwd~~~--------~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
| +|+++++++.--.|++|.+-- -...+.++||. ..+.. +++...+++.|.||+++|||..
T Consensus 238 P-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~--saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 238 P-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ--SAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred C-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch--hheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 9 999999999999999998732 24567788998 44433 5588999999999999999964
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=144.26 Aligned_cols=194 Identities=12% Similarity=0.110 Sum_probs=146.8
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcce---EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL---RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
+.++||+. +.+.+|++ -.++.|.||++...- ..++. .....+.-+.|. ++++|.+.+-+|.|.-||+.+.
T Consensus 28 I~slA~s~-kS~~lAvs-Rt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~----e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 28 IVSLAYSH-KSNQLAVS-RTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWA----EGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eEEEEEec-cCCceeee-ccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEc----cCCeEEeecCCceEEEEecccC
Confidence 56899998 45678888 689999999986322 22222 122344444442 3789999999999999999998
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee--eccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS--RWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~--~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
++...+... ++.|+++|.+|.+ .++.|++||.+..++...++... .|.-. ++.|.+++|+| ++..+++|+.
T Consensus 101 ---k~~~~~d~~-gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq-~sRvLslsw~~-~~~~i~~Gs~ 174 (691)
T KOG2048|consen 101 ---KQKYNIDSN-GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ-KSRVLSLSWNP-TGTKIAGGSI 174 (691)
T ss_pred ---ceeEEecCC-CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc-cceEEEEEecC-CccEEEeccc
Confidence 777777655 7999999999999 99999999988888887776654 33344 68999999999 9999999999
Q ss_pred CCeEEEEECcCCceeEEEEcC----CC-----eeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 305 DYEVFCGQWRESSKVFAFRGD----SN-----WLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 305 D~~i~vwd~~~~~~~~~~~g~----~~-----~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
||.|++||...+..+...... .. ..++..+ ....|++|..-|+|++||...+.
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcc
Confidence 999999999987666633211 10 0111112 45689999999999999998875
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-16 Score=132.40 Aligned_cols=218 Identities=12% Similarity=0.129 Sum_probs=152.1
Q ss_pred CCccceeeEEEEeecCC-CCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 89 CPHRSEVQSIALAETDS-SGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~-~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..|.-.++.+-|.|+.. --..+||+.+. .+++|.+......... .-.+..+.....-...++..|+..++.++.++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~-~~~L~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVEL-QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceeh-hhhhccCcccccCCcccccccccCCcceeEee
Confidence 57889999999999852 12367777665 6889988754221111 01111111111112356788998889998888
Q ss_pred ecccceEEEEeCCcc----eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 168 RSFSKSIDVYDQDIH----LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
|-|.+..|||+... +++ +...|...+-.+.+... .-+.|+++|.||.||+||+|..+-...+..-... ..+
T Consensus 170 -SiDTTCTiWdie~~~~~~vkT-QLIAHDKEV~DIaf~~~--s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~-~~p 244 (364)
T KOG0290|consen 170 -SIDTTCTIWDIETGVSGTVKT-QLIAHDKEVYDIAFLKG--SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP-STP 244 (364)
T ss_pred -cccCeEEEEEEeeccccceee-EEEecCcceeEEEeccC--ccceEEEecCCCcEEEEEecccccceEEecCCCC-CCc
Confidence 99999999998653 222 23334444333333221 1257888999999999999987432333222111 367
Q ss_pred EEEEEECCCC--cEEEEe-CCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 244 LYAVCSSSTG--NIAVAG-ADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 244 v~~v~~sp~g--~lasgs-~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
..-++|+++. ++|+-. ....|.|.|+|. ..++.++.+| +..|++++|.|+...+|+|+|.|..+.+||+..
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 8889999988 777744 445789999998 6788999999 999999999999999999999999999999976
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-16 Score=134.17 Aligned_cols=228 Identities=12% Similarity=0.050 Sum_probs=151.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee-EEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM-AAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~-~a~ 166 (369)
...|.+.|..|.|.+.+ -+.++|+++-|+++.||.-.....+..+..+... ....-....++.+.|.|..-++ +|+
T Consensus 55 Wrah~~Si~rV~WAhPE--fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~-ttl~DsrssV~DV~FaP~hlGLklA~ 131 (361)
T KOG2445|consen 55 WRAHDGSIWRVVWAHPE--FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRR-TTLVDSRSSVTDVKFAPKHLGLKLAA 131 (361)
T ss_pred EEecCCcEEEEEecCcc--ccceEEEEecCCceeeeeecccccccccceeEEE-EEeecCCcceeEEEecchhcceEEEE
Confidence 45799999999998876 4689999999999999987533222222222110 0111123457799999965554 566
Q ss_pred EecccceEEEEeCCcc--eEE------EE-----eeeCCcceeeeccCCCCCCCCcEEEEEcCC------eEEEEeCCcc
Q 017601 167 ARSFSKSIDVYDQDIH--LRT------LR-----TLWYPSSLNFVQNLSPVNGGPNMLAVTEGC------QLTIWDLRMK 227 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~--~~~------~~-----~~~~~~~v~~~~~~~~~~~~~~lla~s~d~------~v~iwD~~~~ 227 (369)
+ +.||.+|||+.... .+. ++ ...+.....++.+.+- --...+++++.|. .++||.....
T Consensus 132 ~-~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~s-r~~~p~iAvgs~e~a~~~~~~~Iye~~e~ 209 (361)
T KOG2445|consen 132 A-SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPS-RMHEPLIAVGSDEDAPHLNKVKIYEYNEN 209 (361)
T ss_pred e-ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccc-cccCceEEEEcccCCccccceEEEEecCC
Confidence 6 99999999986321 111 11 0011122222222211 1123456655554 8999987654
Q ss_pred c-CCceeeeeeccCCCcEEEEEECCCC-----cEEEEeCCCcEEEEeCCC--------------------ceeeeecccc
Q 017601 228 E-NGGCLHRICGSVGDILYAVCSSSTG-----NIAVAGADRTVTIYDPRR--------------------WSALSRWVHC 281 (369)
Q Consensus 228 ~-~~~~~~~~~~~~~~~v~~v~~sp~g-----~lasgs~D~~v~vwD~~~--------------------~~~~~~~~~h 281 (369)
. +...+..+.++ +.+|+.++|.|+- .||+|+.|| |+||.++. -+.+..+.+|
T Consensus 210 ~rKw~kva~L~d~-~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H 287 (361)
T KOG2445|consen 210 GRKWLKVAELPDH-TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH 287 (361)
T ss_pred cceeeeehhcCCC-CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence 2 22344556665 7999999999985 789999999 99999872 1234557789
Q ss_pred ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC---CceeEEEEc
Q 017601 282 SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE---SSKVFAFRG 324 (369)
Q Consensus 282 ~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~---~~~~~~~~g 324 (369)
+.+|..+.|+= .|..|+|.|.||.||+|...- -+|...+..
T Consensus 288 -~~~VWrv~wNm-tGtiLsStGdDG~VRLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 288 -NGEVWRVRWNM-TGTILSSTGDDGCVRLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred -CCceEEEEEee-eeeEEeecCCCceeeehhhhhhhhheeeeEEec
Confidence 99999999998 999999999999999997653 345555543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-16 Score=136.34 Aligned_cols=189 Identities=16% Similarity=0.188 Sum_probs=132.7
Q ss_pred eeEEEEecccceEEEEeCCc--ceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee--
Q 017601 162 SMAAVARSFSKSIDVYDQDI--HLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI-- 236 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~-- 236 (369)
..+|++ -..++|++||... .++.+.... ....+.|+... ....+++++.||+|++||+|+. ....++
T Consensus 41 ~~vav~-lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d----s~h~v~s~ssDG~Vr~wD~Rs~---~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVS-LSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD----SPHGVISCSSDGTVRLWDIRSQ---AESARISW 112 (376)
T ss_pred eeEEEE-ecCCeEEEEeccchhhhheecCCCCcccceEEecCC----CCCeeEEeccCCeEEEEEeecc---hhhhheec
Confidence 467777 7789999999764 444443322 22455666531 2357888999999999999987 333333
Q ss_pred eccCCCcEEEEEECCCC-cEEEEeC----CCcEEEEeCCCcee-eeecc-ccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 237 CGSVGDILYAVCSSSTG-NIAVAGA----DRTVTIYDPRRWSA-LSRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g-~lasgs~----D~~v~vwD~~~~~~-~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
..+.+.+..|++.+-.+ .+++|.. |-.|.+||+|..+. +..+. .| .+.|++|.|+|.++++|+|||.||-|.
T Consensus 113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH-~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESH-NDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhc-cCcceeEEecCCCCCeEEeecccceEE
Confidence 23313577788877666 7777753 67899999999765 66655 67 999999999999999999999999999
Q ss_pred EEECcCC----ceeEEEEcCCCeeeeeEcCCC-CEEEEEeCCCcEEEEECCCCcc
Q 017601 310 CGQWRES----SKVFAFRGDSNWLGFSKCSNR-DVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 310 vwd~~~~----~~~~~~~g~~~~~~~~~~~d~-~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
++|++.. .++.++.--+....+....++ +.|.+-+..++..+|+++.+..
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 9999763 233444222211122222233 4699999999999999998864
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=131.65 Aligned_cols=208 Identities=15% Similarity=0.160 Sum_probs=145.8
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECC-CCceeEEEEe
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSP-SQWSMAAVAR 168 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p-~~~~~~a~~~ 168 (369)
.|-+.|+|+.|.|++ ..+++.+ +-+|-+|+++.+.. + ...+.......++-.+++-+|+| .+...+++.
T Consensus 121 eavg~i~cvew~Pns----~klasm~-dn~i~l~~l~ess~-~---vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt- 190 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNS----DKLASMD-DNNIVLWSLDESSK-I---VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT- 190 (370)
T ss_pred HHhCceeeEEEcCCC----CeeEEec-cCceEEEEcccCcc-h---heeecccccccccceecccccCCCCccceEEEe-
Confidence 355799999999973 6777777 56899999987632 1 11111111111222356788999 455666765
Q ss_pred cccceEEEEeCCcceEEEEeee-CCcceeeeccCCCCCCCC-cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 169 SFSKSIDVYDQDIHLRTLRTLW-YPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
.|+++..||.....+...... |...+..+. |+|+.+ .|+++++||.|+|||.|..+ .+++.+.+| ...|++
T Consensus 191 -~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD---fNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~H-sHWvW~ 263 (370)
T KOG1007|consen 191 -SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD---FNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGH-SHWVWA 263 (370)
T ss_pred -CCCcEEEEEccchhhhcchhhhhcceeeecc---CCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCC-ceEEEE
Confidence 689999999863322222111 222333333 344444 45668899999999999764 678888877 789999
Q ss_pred EEECCCC--cEEEEeCCCcEEEEeCCC-----------------------------ceeeeeccccccCceEEEEEcCCC
Q 017601 247 VCSSSTG--NIAVAGADRTVTIYDPRR-----------------------------WSALSRWVHCSKYEITGLSFSSID 295 (369)
Q Consensus 247 v~~sp~g--~lasgs~D~~v~vwD~~~-----------------------------~~~~~~~~~h~~~~v~~l~~sp~d 295 (369)
+.|+|.- +|.+|+.|..|.+|-... ...+.++..| .+.|++++||..|
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh-EDSVY~~aWSsad 342 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH-EDSVYALAWSSAD 342 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc-ccceEEEeeccCC
Confidence 9999987 889999999999996532 0123456778 9999999999989
Q ss_pred CCEEEEEECCCeEEEEECcC
Q 017601 296 SNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~ 315 (369)
+=.+||-|.||++.|=.+..
T Consensus 343 PWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred CeeEEEeccCceEEeecCCh
Confidence 99999999999998866543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-16 Score=146.78 Aligned_cols=242 Identities=16% Similarity=0.099 Sum_probs=170.5
Q ss_pred EEEEEEeCCchhhhcCC-CccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC
Q 017601 53 LYKLQVMMDDWFVSEGK-DSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD 131 (369)
Q Consensus 53 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~ 131 (369)
+..++|++.+..++.|. .+.++.-+.+..+ .....-.|..||.|+.||... -..++||+++.+.-|+++|+.....-
T Consensus 462 ~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-~~~~~eAHesEilcLeyS~p~-~~~kLLASasrdRlIHV~Dv~rny~l 539 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLASGDRGGNLRVYDLQELE-YTCFMEAHESEILCLEYSFPV-LTNKLLASASRDRLIHVYDVKRNYDL 539 (1080)
T ss_pred eEEEEECCCcceecccCccCceEEEEehhhh-hhhheecccceeEEEeecCch-hhhHhhhhccCCceEEEEecccccch
Confidence 34566666666666665 3455554444443 223345899999999998542 23589999999999999999754321
Q ss_pred CccccccccCCCCCCCCCCeeEEEECCCCc-eeEEEEecccceEEEEeCCcc---eEEE-Eeee--CCcceeeeccCCCC
Q 017601 132 VDRLTYSVLPQDCGVGEGSWSGLCFSPSQW-SMAAVARSFSKSIDVYDQDIH---LRTL-RTLW--YPSSLNFVQNLSPV 204 (369)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~~a~~~s~d~~i~lwd~~~~---~~~~-~~~~--~~~~v~~~~~~~~~ 204 (369)
+ ..+..|. ..++++.|--.+. ...++| +.|+.|.. +..+. .+.+ +..+ ..+.+-.+. ..
T Consensus 540 ~----qtld~HS-----ssITsvKFa~~gln~~Misc-GADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~---Vd 605 (1080)
T KOG1408|consen 540 V----QTLDGHS-----SSITSVKFACNGLNRKMISC-GADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMA---VD 605 (1080)
T ss_pred h----hhhcccc-----cceeEEEEeecCCceEEEec-cCchhhhe-ehhccccCceeccccccccccceEEEee---eC
Confidence 1 1122222 3466888877553 345666 88998743 33211 1111 1111 112222222 23
Q ss_pred CCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC--CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc
Q 017601 205 NGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV--GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC 281 (369)
Q Consensus 205 ~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h 281 (369)
|....+++++.|..|+|||+..+ +.++.|++.. .+..--+...|.| +||+...|+++.++|.-+++++.+..||
T Consensus 606 p~~k~v~t~cQDrnirif~i~sg---Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 606 PTSKLVVTVCQDRNIRIFDIESG---KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred CCcceEEEEecccceEEEecccc---ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 44568889999999999999998 7888887532 3556678899999 9999999999999999999999999999
Q ss_pred ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 282 SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 282 ~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
...|+.+.|.+ |-++|+|.+.|+.|.||.+..
T Consensus 683 -sE~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 683 -SEAVTGVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -chheeeeeecc-cchhheeecCCceEEEEECch
Confidence 99999999999 999999999999999999754
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-15 Score=139.33 Aligned_cols=319 Identities=15% Similarity=0.115 Sum_probs=196.9
Q ss_pred ceeeeecCCccccC-CCCCccc--cceeEEEecCCCceEEEEEEeCCeEEEEEEeCCchhhhcC-CCccccccCcccccc
Q 017601 8 SLRKAEVPLSLIEN-PSPGNIQ--CTRLALHVNEDGCSCFVYIASGCHLYKLQVMMDDWFVSEG-KDSLLIPEQTPVMDS 83 (369)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~--~~r~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (369)
..|.-.=|.+|++. |+|.++. .++.++ +|..--+.|..|.+.+.+.++..| +++.++.+.+.++..
T Consensus 365 K~rlniDpe~LiPkLPsp~dLrPFPt~~~l----------vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc 434 (733)
T KOG0650|consen 365 KMRLNIDPESLIPKLPSPKDLRPFPTRCAL----------VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC 434 (733)
T ss_pred cceecCCHHHhcccCCChhhcCCCcceeee----------eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE
Confidence 33444446666644 6776652 344333 444555566677888888888555 477776666655542
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccc---ccccC-----------CCCC---C
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLT---YSVLP-----------QDCG---V 146 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~---~~~~~-----------~~~~---~ 146 (369)
+..+...++|.||+|+|... ..+||.+-. .++.+.+..-+........ +.-.+ .... .
T Consensus 435 --vr~~~~d~~I~~vaw~P~~~--~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e 509 (733)
T KOG0650|consen 435 --VRTVQFDSEIRSVAWNPLSD--LCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDE 509 (733)
T ss_pred --EEEEeecceeEEEEecCCCC--ceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhh
Confidence 22445568999999999742 234433322 2355544332210000000 00000 0000 0
Q ss_pred CCC----------CeeEEEECCCCceeEEEEe--cccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE
Q 017601 147 GEG----------SWSGLCFSPSQWSMAAVAR--SFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT 214 (369)
Q Consensus 147 ~~~----------~~~~l~~~p~~~~~~a~~~--s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s 214 (369)
.+. .+..+.|+..++ +||+.. +..+.|-|.++.+.............+.++.++|..+ +|+. +
T Consensus 510 ~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p---~lfV-a 584 (733)
T KOG0650|consen 510 LEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP---YLFV-A 584 (733)
T ss_pred hccceEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCc---eEEE-E
Confidence 111 245688888555 444431 3456788888765433221111222333333333322 4444 4
Q ss_pred cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEc
Q 017601 215 EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFS 292 (369)
Q Consensus 215 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~s 292 (369)
....|+|||+..+ ..++.+... ...|.+++.+|.| .|+.|+.|+.+..||+.- .++.+++..| ...+++|+|+
T Consensus 585 Tq~~vRiYdL~kq---elvKkL~tg-~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H 659 (733)
T KOG0650|consen 585 TQRSVRIYDLSKQ---ELVKKLLTG-SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFH 659 (733)
T ss_pred eccceEEEehhHH---HHHHHHhcC-CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhc
Confidence 4578999999876 555554432 3789999999999 999999999999999976 5678889999 9999999999
Q ss_pred CCCCCEEEEEECCCeEEEEE------CcCC---ceeEEEEcCCCe--eeeeE---cCCCCEEEEEeCCCcEEEE
Q 017601 293 SIDSNYIYVQGVDYEVFCGQ------WRES---SKVFAFRGDSNW--LGFSK---CSNRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 293 p~d~~~l~s~s~D~~i~vwd------~~~~---~~~~~~~g~~~~--~~~~~---~~d~~~l~sgs~dg~I~iW 352 (369)
+ .-.+++||+.|+++.|+- +-.+ -.+..++||..- .++.. -|...+|++++.||+|++|
T Consensus 660 ~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 660 K-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred c-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9 778899999999999984 3222 345667888732 22332 3477899999999999998
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-14 Score=138.33 Aligned_cols=264 Identities=16% Similarity=0.145 Sum_probs=185.2
Q ss_pred EEEEEeCCeEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEE
Q 017601 44 FVYIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVS 123 (369)
Q Consensus 44 ~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~ 123 (369)
++|.|+|..||..+ .|+. ......+|.+.|.-+..-. .-+.++|.++.+++|
T Consensus 88 ~vy~A~g~~i~~~~---------rgk~-------------i~~~~~~~~a~v~~l~~fG------e~lia~d~~~~l~vw 139 (910)
T KOG1539|consen 88 YVYVASGNKIYAYA---------RGKH-------------IRHTTLLHGAKVHLLLPFG------EHLIAVDISNILFVW 139 (910)
T ss_pred eEEEecCcEEEEEE---------ccce-------------EEEEeccccceEEEEeeec------ceEEEEEccCcEEEE
Confidence 57888888887776 1211 1122446777777665432 367778889999999
Q ss_pred EecCCCCCCccccccccCCCCCCCCCCeeEEEECCC-CceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeecc
Q 017601 124 KLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS-QWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQN 200 (369)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~ 200 (369)
+......+... ...+. ......+++ -+||. -=+.++++ +.+|.++||++. +.+.+++. ....++.+..
T Consensus 140 ~~s~~~~e~~l-~~~~~----~~~~~~Ita-l~HP~TYLNKIvvG-s~~G~lql~Nvrt~K~v~~f~~--~~s~IT~ieq 210 (910)
T KOG1539|consen 140 KTSSIQEELYL-QSTFL----KVEGDFITA-LLHPSTYLNKIVVG-SSQGRLQLWNVRTGKVVYTFQE--FFSRITAIEQ 210 (910)
T ss_pred Eeccccccccc-cceee----eccCCceee-EecchhheeeEEEe-ecCCcEEEEEeccCcEEEEecc--cccceeEecc
Confidence 98763111100 00010 011112443 35663 22457777 899999999986 44444432 3466666664
Q ss_pred CCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeec
Q 017601 201 LSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRW 278 (369)
Q Consensus 201 ~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~ 278 (369)
.|. =..++.+..+|+|.|++++.+ +.+..|++. .++|++++|..|| .+|+|+..|.+.+||+...+.+..+
T Consensus 211 sPa---LDVVaiG~~~G~ViifNlK~d---kil~sFk~d-~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~ 283 (910)
T KOG1539|consen 211 SPA---LDVVAIGLENGTVIIFNLKFD---KILMSFKQD-WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVT 283 (910)
T ss_pred CCc---ceEEEEeccCceEEEEEcccC---cEEEEEEcc-ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeee
Confidence 331 124445668999999999998 889999875 6999999999999 9999999999999999998888776
Q ss_pred c-ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC----CceeEEEEcCCCeeeee---E-cCCCCEEEEEeCCCcE
Q 017601 279 V-HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE----SSKVFAFRGDSNWLGFS---K-CSNRDVLGGWSDSGSI 349 (369)
Q Consensus 279 ~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~----~~~~~~~~g~~~~~~~~---~-~~d~~~l~sgs~dg~I 349 (369)
. .| .+.|+...|-| ....+++++.|+.+++|=.++ .+.++.-.||+ .+-. . -.+|.++.+++.|++.
T Consensus 284 ~nah-~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs--~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 284 RNAH-YGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS--APPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred eccc-cCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCC--CCchheeeeccCcEEEEecccCcch
Confidence 6 67 89999999999 888999999999988886654 25666667887 3222 2 2378999999999999
Q ss_pred EEEECC
Q 017601 350 FVADVV 355 (369)
Q Consensus 350 ~iWd~~ 355 (369)
+.+++.
T Consensus 360 r~fs~~ 365 (910)
T KOG1539|consen 360 RSFSVI 365 (910)
T ss_pred hhhhhh
Confidence 888764
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=131.61 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=117.8
Q ss_pred eeEEEECC----CCceeEEEEecccceEEEEeCC--cceEEEEeeeCC---cceeeeccCCCCCC-CCcEEEEEcCCeEE
Q 017601 151 WSGLCFSP----SQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYP---SSLNFVQNLSPVNG-GPNMLAVTEGCQLT 220 (369)
Q Consensus 151 ~~~l~~~p----~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~---~~v~~~~~~~~~~~-~~~lla~s~d~~v~ 220 (369)
+.+++|++ +.++.+|+.+ ...+.+|+.. ..++.++....+ ...-.+.+.--..+ +..+++++.-|.|+
T Consensus 41 I~gv~fN~~~~~~e~~vfatvG--~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIr 118 (385)
T KOG1034|consen 41 IFGVAFNSFLGCDEPQVFATVG--GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIR 118 (385)
T ss_pred cceeeeehhcCCCCCceEEEeC--CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEE
Confidence 44788874 2445677663 3567888643 333555443322 22212222211222 34566677889999
Q ss_pred EEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeec---cccccCceEEEEEcCCC
Q 017601 221 IWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRW---VHCSKYEITGLSFSSID 295 (369)
Q Consensus 221 iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~---~~h~~~~v~~l~~sp~d 295 (369)
|.|+.++ ++...+.+| +..|+.+.|.|+. +++++|.|.+|++||+++..++..+ .+| .++|.++.|++ +
T Consensus 119 Vid~~~~---~~~~~~~gh-G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH-rdeVLSvD~~~-~ 192 (385)
T KOG1034|consen 119 VIDVVSG---QCSKNYRGH-GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH-RDEVLSVDFSL-D 192 (385)
T ss_pred EEecchh---hhccceecc-CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccc-cCcEEEEEEcC-C
Confidence 9999988 888888888 8999999999999 8999999999999999999887765 579 99999999999 9
Q ss_pred CCEEEEEECCCeEEEEECc
Q 017601 296 SNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~ 314 (369)
+.+++|+|+|..+++|++.
T Consensus 193 gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred CCeeeccCCcceEEEEecC
Confidence 9999999999999999987
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-14 Score=125.32 Aligned_cols=284 Identities=15% Similarity=0.145 Sum_probs=189.2
Q ss_pred EEEecCCCceEEEEEEeCCeEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEE
Q 017601 33 ALHVNEDGCSCFVYIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLG 112 (369)
Q Consensus 33 ~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~la 112 (369)
.++|++-| -|+|.|+.-+++- |++ ..+-.+.++ +.+|...|++++||+|+ ..|.
T Consensus 28 ~~~Fs~~G----~~lAvGc~nG~vv----------------I~D-~~T~~iar~-lsaH~~pi~sl~WS~dg----r~Ll 81 (405)
T KOG1273|consen 28 CCQFSRWG----DYLAVGCANGRVV----------------IYD-FDTFRIARM-LSAHVRPITSLCWSRDG----RKLL 81 (405)
T ss_pred eEEeccCc----ceeeeeccCCcEE----------------EEE-ccccchhhh-hhccccceeEEEecCCC----CEee
Confidence 46677766 5889887544433 322 111111121 56899999999999984 6777
Q ss_pred EEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCC
Q 017601 113 SVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYP 192 (369)
Q Consensus 113 s~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~ 192 (369)
+.+.+-.+.+||+..+.. .....+. ..+.++.|+|.+.+.++++ -.+..-.+-+....+..+-.....
T Consensus 82 tsS~D~si~lwDl~~gs~---l~rirf~--------spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~~Lp~d~d 149 (405)
T KOG1273|consen 82 TSSRDWSIKLWDLLKGSP---LKRIRFD--------SPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHSVLPKDDD 149 (405)
T ss_pred eecCCceeEEEeccCCCc---eeEEEcc--------CccceeeeccccCCeEEEE-EecCCcEEEEecCCceeeccCCCc
Confidence 888888999999986631 1111111 1244799999877776666 566655555555444444333333
Q ss_pred cceeeecc-CCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCC
Q 017601 193 SSLNFVQN-LSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPR 270 (369)
Q Consensus 193 ~~v~~~~~-~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~ 270 (369)
...+..+. ..|.+.|.+++++..-|.+.++|..+- +++..+.-.....|..+-|+..| .|+.-..|+.|+.|+++
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~---e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL---ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchh---eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 33333332 234466789999999999999999988 78877765423788899999999 99999999999999987
Q ss_pred C-------cee--eeecccc-ccCceEEEEEcCCCCCEEEEEEC-CCeEEEEECcCCceeEEEEcCCC--eeeeeEcCCC
Q 017601 271 R-------WSA--LSRWVHC-SKYEITGLSFSSIDSNYIYVQGV-DYEVFCGQWRESSKVFAFRGDSN--WLGFSKCSNR 337 (369)
Q Consensus 271 ~-------~~~--~~~~~~h-~~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~~~~~~~~~~~g~~~--~~~~~~~~d~ 337 (369)
. +++ .++++.- .+-.-.++.||. +|.++..++. -..++||.-..|.+++.+.|... ...+..-+-.
T Consensus 227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~r 305 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVR 305 (405)
T ss_pred hhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccce
Confidence 3 111 2222211 023456789999 9999887764 45899999999999999977541 0111112233
Q ss_pred CEEEEEeCCCcEEEEECCCCcc
Q 017601 338 DVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 338 ~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
..|++- ..|.|+||.....++
T Consensus 306 p~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 306 PIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred eeeeec-cCCceEEEEeecccc
Confidence 456666 789999998876554
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-13 Score=126.65 Aligned_cols=236 Identities=16% Similarity=0.192 Sum_probs=163.8
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
+.-|.|++|.+++ -+.++|++|+|.+|+.... ...+.+..| ++|+.+++.-. ++.++++ +.|
T Consensus 246 kk~Vl~v~F~eng-----dviTgDS~G~i~Iw~~~~~-----~~~k~~~aH-----~ggv~~L~~lr--~GtllSG-gKD 307 (626)
T KOG2106|consen 246 KKFVLCVTFLENG-----DVITGDSGGNILIWSKGTN-----RISKQVHAH-----DGGVFSLCMLR--DGTLLSG-GKD 307 (626)
T ss_pred ceEEEEEEEcCCC-----CEEeecCCceEEEEeCCCc-----eEEeEeeec-----CCceEEEEEec--CccEeec-Ccc
Confidence 3789999999974 5778999999999998543 112223233 45666788876 3456676 999
Q ss_pred ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECC
Q 017601 172 KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSS 251 (369)
Q Consensus 172 ~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp 251 (369)
+.|.+||.. .++++...-|...-++.... +..+-|+.+...+.|--=.+..+ -.+. ..+| +.....++.+|
T Consensus 308 Rki~~Wd~~--y~k~r~~elPe~~G~iRtv~--e~~~di~vGTtrN~iL~Gt~~~~---f~~~-v~gh-~delwgla~hp 378 (626)
T KOG2106|consen 308 RKIILWDDN--YRKLRETELPEQFGPIRTVA--EGKGDILVGTTRNFILQGTLENG---FTLT-VQGH-GDELWGLATHP 378 (626)
T ss_pred ceEEecccc--ccccccccCchhcCCeeEEe--cCCCcEEEeeccceEEEeeecCC---ceEE-EEec-ccceeeEEcCC
Confidence 999999943 22222222222211221111 11233666666666655555544 3333 3444 57899999999
Q ss_pred CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeee
Q 017601 252 TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLG 330 (369)
Q Consensus 252 ~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~ 330 (369)
+. ++++++.|+.+++|+ ..+++-+.. ..+++.++.|+| .| .+|.|...|.-.+.|.++...+...........
T Consensus 379 s~~q~~T~gqdk~v~lW~--~~k~~wt~~--~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~ 452 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN--DHKLEWTKI--IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSV 452 (626)
T ss_pred ChhheeeccCcceEEEcc--CCceeEEEE--ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecCCceEE
Confidence 99 999999999999999 333333322 257899999999 88 999999999999999999777766655443334
Q ss_pred eeEcCCCCEEEEEeCCCcEEEEECCCCcch
Q 017601 331 FSKCSNRDVLGGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 331 ~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~ 360 (369)
+..+++|.+||.||.|+.|+||.+...+..
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 455889999999999999999998776543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=125.34 Aligned_cols=199 Identities=17% Similarity=0.153 Sum_probs=140.2
Q ss_pred eeEEEECCCC----ceeEEEEecccceEEEEeCCcceEE------EE---eeeCCcceeeeccCCCCCCCCcEEEEEcCC
Q 017601 151 WSGLCFSPSQ----WSMAAVARSFSKSIDVYDQDIHLRT------LR---TLWYPSSLNFVQNLSPVNGGPNMLAVTEGC 217 (369)
Q Consensus 151 ~~~l~~~p~~----~~~~a~~~s~d~~i~lwd~~~~~~~------~~---~~~~~~~v~~~~~~~~~~~~~~lla~s~d~ 217 (369)
.+.+-|.|+. +.++|++ +..+|||.++..... +. ...+...++.+.|....| ..+.+.|-|-
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs---~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp--~~igtSSiDT 173 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATS---SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDP--NLIGTSSIDT 173 (364)
T ss_pred ccceEecCCccccCcchhhcc---cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCc--ceeEeecccC
Confidence 3468888854 2466765 357999977521111 11 111233444455543333 5777788899
Q ss_pred eEEEEeCCcccCCceeee-eeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceee---eeccccccCceEEEEE
Q 017601 218 QLTIWDLRMKENGGCLHR-ICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSAL---SRWVHCSKYEITGLSF 291 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~-~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~---~~~~~h~~~~v~~l~~ 291 (369)
++.|||+.++..+..... +.|. ..|+.++|...+ .+|+.|.||+|++||+|..+-. .+-... ..+...++|
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHD--KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~-~~pLlRLsw 250 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHD--KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP-STPLLRLSW 250 (364)
T ss_pred eEEEEEEeeccccceeeEEEecC--cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC-CCcceeecc
Confidence 999999998622112222 4454 999999999977 9999999999999999985432 222232 467899999
Q ss_pred cCCCCCEEEEEECCC-eEEEEECcC-CceeEEEEcCCCe-eeeeEcC-CCCEEEEEeCCCcEEEEECCCC
Q 017601 292 SSIDSNYIYVQGVDY-EVFCGQWRE-SSKVFAFRGDSNW-LGFSKCS-NRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 292 sp~d~~~l~s~s~D~-~i~vwd~~~-~~~~~~~~g~~~~-~~~~~~~-d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+++|.+++|+-.+|. .|.+.|++. ...+..+++|..- .++...| ....|+++++|..+.|||+.+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 999999999988876 799999987 4567788888721 3444455 6789999999999999999763
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.2e-15 Score=141.55 Aligned_cols=252 Identities=14% Similarity=0.049 Sum_probs=166.9
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCc-eeEEEEec
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQW-SMAAVARS 169 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~~a~~~s 169 (369)
-..+|.++.|+|.. ..+++++..+|.|.+||+..+..... ..+..+...+.+. +..+.|-.... ..++++ |
T Consensus 241 ~~s~v~~~~f~p~~---p~ll~gG~y~GqV~lWD~~~~~~~~~---s~ls~~~~sh~~~-v~~vvW~~~~~~~~f~s~-s 312 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFD---PNLLAGGCYNGQVVLWDLRKGSDTPP---SGLSALEVSHSEP-VTAVVWLQNEHNTEFFSL-S 312 (555)
T ss_pred cCCceeEEEeccCC---cceEEeeccCceEEEEEccCCCCCCC---cccccccccCCcC-eEEEEEeccCCCCceEEE-e
Confidence 35889999999974 68999999999999999987643211 1111122222222 33566644221 347777 6
Q ss_pred ccceEEEEeCCcceEEEE-----ee-------eCCcceeeeccCCCCCCCCcEEEEEcCCeEEE---EeCCcccC--Cce
Q 017601 170 FSKSIDVYDQDIHLRTLR-----TL-------WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTI---WDLRMKEN--GGC 232 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~~~~-----~~-------~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~i---wD~~~~~~--~~~ 232 (369)
.||.|+.|+++....... .. .....+..+.+.+..| ..|+.++++|.|.- ++.+.... -+.
T Consensus 313 sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p--~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~ 390 (555)
T KOG1587|consen 313 SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP--NHFIVGTEEGKVYKGCRKGYTPAPEVSYKG 390 (555)
T ss_pred cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC--ceEEEEcCCcEEEEEeccCCcccccccccc
Confidence 799999998753222111 00 1112233344333333 58999999998876 33333210 011
Q ss_pred eeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCC-CceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 233 LHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPR-RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~-~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
+..+..+ .++|+++.++|-+ .+.+++ |-+|+||... ...++..+.-+ ...|++++|||..+..++++..||.+.
T Consensus 391 ~~~~~~h-~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~-~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 391 HSTFITH-IGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSS-PDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred ccccccc-CcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhc-cceeeeeEEcCcCceEEEEEcCCCcee
Confidence 2222222 4899999999999 445555 9999999988 77888888888 888999999998888999999999999
Q ss_pred EEECcCC--ceeEEEEcCCCeeeeeE-cCCCCEEEEEeCCCcEEEEECC
Q 017601 310 CGQWRES--SKVFAFRGDSNWLGFSK-CSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 310 vwd~~~~--~~~~~~~g~~~~~~~~~-~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+||+... +.+.+..-+........ ..+|.+|+.|...|++.+|++.
T Consensus 468 iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 468 IWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred hhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 9999763 33333322221122222 3469999999999999999985
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-13 Score=128.32 Aligned_cols=250 Identities=20% Similarity=0.193 Sum_probs=175.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEE-CCCCceeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCF-SPSQWSMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~p~~~~~~a~ 166 (369)
...|...|..+.|.+.+ ..+...+.++.+.+|+....... ...+..... ..+..+.+ +++....++.
T Consensus 61 ~~~~~~~i~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 61 LRGHEDSITSIAFSPDG----ELLLSGSSDGTIKLWDLDNGEKL----IKSLEGLHD----SSVSKLALSSPDGNSILLA 128 (466)
T ss_pred eeeccceEEEEEECCCC----cEEEEecCCCcEEEEEcCCCcee----EEEEeccCC----CceeeEEEECCCcceEEec
Confidence 56899999999998873 56777778899999998865200 111111000 11334555 6755545555
Q ss_pred EecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 167 ARSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
....|+.+.+||... .........+...+..+.. .+++..+++++. |+.+++|++..+ ..+..+..+ ...|
T Consensus 129 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~v 201 (466)
T COG2319 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF---SPDGKLLASGSSLDGTIKLWDLRTG---KPLSTLAGH-TDPV 201 (466)
T ss_pred cCCCCccEEEEEecCCCeEEEEEecCcccEEEEEE---CCCCCEEEecCCCCCceEEEEcCCC---ceEEeeccC-CCce
Confidence 535599999999875 2222223334444443432 244556666765 999999999986 677777765 6899
Q ss_pred EEEEECCCC-cEEE-EeCCCcEEEEeCCCceeee-eccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCce-eE
Q 017601 245 YAVCSSSTG-NIAV-AGADRTVTIYDPRRWSALS-RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSK-VF 320 (369)
Q Consensus 245 ~~v~~sp~g-~las-gs~D~~v~vwD~~~~~~~~-~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~-~~ 320 (369)
.+++|+|++ .++. ++.|++|++||.+.+..+. .+.+| ...+ -..|+| ++..+++++.|+.+++||.+.... ..
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH-SDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC-Ccce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEE
Confidence 999999999 3544 4999999999999888888 68888 6664 338999 888999999999999999987554 44
Q ss_pred EEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 321 AFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 321 ~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.+.+|... ..+...+++..+++++.|+.+.+|+..+...
T Consensus 279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence 44566422 2333355778888899999999998877653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-15 Score=136.40 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=159.9
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcc---eEE
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH---LRT 185 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~---~~~ 185 (369)
...|+.++ ++.+||...... .-.+.++.. +.|+..++|+..+.-.+|.. +.|+.|++|.-... +..
T Consensus 5 l~~aS~gd--~~kl~D~s~~~~-----~~~~~~~t~---~pg~~s~~w~~~n~lvvas~-~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 5 LHVASTGD--KTKLSDFSDLET-----KSEYVHQTA---EPGDFSFNWQRRNFLVVASM-AGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred eeeeccCC--ceEEeecccccC-----ccccccCCC---CCcceeeeccccceEEEeec-CCceeEEEecccCCCCccce
Confidence 34455444 577888764311 112222322 23466788888544334444 78999999975433 322
Q ss_pred EEeee--CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC
Q 017601 186 LRTLW--YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR 262 (369)
Q Consensus 186 ~~~~~--~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~ 262 (369)
+.... ...+++... + .-++++++..+.|+|||++.. -+.+.++.| ...|+++.++-.. +||+++..|
T Consensus 74 ~~k~~gd~~~Cv~~~s---~---S~y~~sgG~~~~Vkiwdl~~k---l~hr~lkdh-~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 74 VRKLTGDNAFCVACAS---Q---SLYEISGGQSGCVKIWDLRAK---LIHRFLKDH-QSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred eeccccchHHHHhhhh---c---ceeeeccCcCceeeehhhHHH---HHhhhccCC-cceeEEEEecCCcceeEEeccCC
Confidence 32222 222333332 2 347888999999999999965 555667777 7999999999888 999999999
Q ss_pred cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE-EcCC-CeeeeeEcC-CCCE
Q 017601 263 TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF-RGDS-NWLGFSKCS-NRDV 339 (369)
Q Consensus 263 ~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~-~g~~-~~~~~~~~~-d~~~ 339 (369)
-|.|..+.++....+|.......|.-+.|||....+|.++|.+|.|.+||+.....++.+ ..|+ ...++..+| +..+
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 999999999888888875524557799999944445677899999999999987776666 3455 113556666 7788
Q ss_pred EEEEeCCCcEEEEECCCCc
Q 017601 340 LGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 340 l~sgs~dg~I~iWd~~~~~ 358 (369)
|++.+.|..|++||....+
T Consensus 224 ~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred EEEecccceEEEeeccccc
Confidence 9999999999999998654
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=138.33 Aligned_cols=254 Identities=14% Similarity=0.114 Sum_probs=181.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|+++.|+|+. ..|.|.+.|..+.+|.-++.. .+-.....+. ..+...+|+.+.-|+|+. ..+++-
T Consensus 263 l~GHeDWV~sv~W~p~~----~~LLSASaDksmiiW~pd~~t-GiWv~~vRlG--e~gg~a~GF~g~lw~~n~-~~ii~~ 334 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEG----LDLLSASADKSMIIWKPDENT-GIWVDVVRLG--EVGGSAGGFWGGLWSPNS-NVIIAH 334 (764)
T ss_pred hcCcccceEEEEEccch----hhheecccCcceEEEecCCcc-ceEEEEEEee--cccccccceeeEEEcCCC-CEEEEe
Confidence 45999999999999973 577777788899999876441 1110011111 011123567789999954 455555
Q ss_pred ecccceEEEEeC-CcceEEEE--eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc-CCceeeeeeccCCCc
Q 017601 168 RSFSKSIDVYDQ-DIHLRTLR--TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE-NGGCLHRICGSVGDI 243 (369)
Q Consensus 168 ~s~d~~i~lwd~-~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~-~~~~~~~~~~~~~~~ 243 (369)
++-|..++|.. ++...... ...|...+..+.+. |.|..|+++|.|.|-|||---..+ .-..+.+-+-| +..
T Consensus 335 -g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~---psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH-GyD 409 (764)
T KOG1063|consen 335 -GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD---PSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH-GYD 409 (764)
T ss_pred -cccCcEEEEeccCccceeeccccccccccceeeeec---CCCCEEEEeccccceeeecccccccceeeecccccc-ccc
Confidence 78999999973 22222221 22355666666654 357799999999999998644111 11233344444 688
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCC----------------------------------------------------
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPR---------------------------------------------------- 270 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~---------------------------------------------------- 270 (369)
++|++|-+.. .+++|.+.+.+|+|+..
T Consensus 410 l~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~ 489 (764)
T KOG1063|consen 410 LTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCA 489 (764)
T ss_pred ceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceee
Confidence 9999998856 99999999999999865
Q ss_pred ------------------------CceeeeeccccccCceEEEEEcCCCCCEEEEEECCC-----eEEEEECcCCceeEE
Q 017601 271 ------------------------RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY-----EVFCGQWRESSKVFA 321 (369)
Q Consensus 271 ------------------------~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~-----~i~vwd~~~~~~~~~ 321 (369)
.+..++++.|| ..+|++++.+| +++++||++... .|++|+..+-.....
T Consensus 490 et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 490 ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQE 567 (764)
T ss_pred ecccccCchhccCCChHHHHHHhccchhhHHhccC-ceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhhe
Confidence 01123445688 99999999999 999999987543 689999988777778
Q ss_pred EEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 322 FRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 322 ~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+.+|+ ..++. ++|+++|++.|.|+++.+|......
T Consensus 568 L~~Hs--LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 568 LEGHS--LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred ecccc--eEEEEEEECCCCcEEEEeecCceEEeeeeeccc
Confidence 89999 77766 6799999999999999999885543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-15 Score=131.03 Aligned_cols=188 Identities=13% Similarity=0.124 Sum_probs=124.6
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC-CceeEEEEecccceEEEEeCCcce--EE
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS-QWSMAAVARSFSKSIDVYDQDIHL--RT 185 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~a~~~s~d~~i~lwd~~~~~--~~ 185 (369)
.++|..=++|.|+++|..++. .+. .+...+. . ..++.|... .+..+.+| +.||+|++||+.... ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-~l~--~fk~~~~--~-----~N~vrf~~~ds~h~v~s~-ssDG~Vr~wD~Rs~~e~a~ 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-LLE--EFKGPPA--T-----TNGVRFISCDSPHGVISC-SSDGTVRLWDIRSQAESAR 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-hhh--eecCCCC--c-----ccceEEecCCCCCeeEEe-ccCCeEEEEEeecchhhhh
Confidence 467777788999999988742 111 1111111 1 225666553 44556777 899999999985322 22
Q ss_pred EEeeeCC-cceeeeccCCCCCCCCcEEEEE-----cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEE
Q 017601 186 LRTLWYP-SSLNFVQNLSPVNGGPNMLAVT-----EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAV 257 (369)
Q Consensus 186 ~~~~~~~-~~v~~~~~~~~~~~~~~lla~s-----~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~las 257 (369)
+...+++ .....+.. +- ...+++++ .+-.|.+||+|..+ +.+..+...+.+.|++++|+|.. +|++
T Consensus 110 ~~~~~~~~~~f~~ld~---nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q--q~l~~~~eSH~DDVT~lrFHP~~pnlLlS 183 (376)
T KOG1188|consen 110 ISWTQQSGTPFICLDL---NC-KKNIIACGTELTRSDASVVLWDVRSEQ--QLLRQLNESHNDDVTQLRFHPSDPNLLLS 183 (376)
T ss_pred eeccCCCCCcceEeec---cC-cCCeEEeccccccCceEEEEEEecccc--chhhhhhhhccCcceeEEecCCCCCeEEe
Confidence 2222333 33333331 11 23455543 36789999999873 33555442225999999999998 9999
Q ss_pred EeCCCcEEEEeCCCc---eeeeeccccccCceEEEEEcCCCC-CEEEEEECCCeEEEEECcC
Q 017601 258 AGADRTVTIYDPRRW---SALSRWVHCSKYEITGLSFSSIDS-NYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 258 gs~D~~v~vwD~~~~---~~~~~~~~h~~~~v~~l~~sp~d~-~~l~s~s~D~~i~vwd~~~ 315 (369)
||.||-|.|||+... ..+.....| ...|..+.|.. ++ +.+.+-+.+.+..+|+++.
T Consensus 184 GSvDGLvnlfD~~~d~EeDaL~~viN~-~sSI~~igw~~-~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 184 GSVDGLVNLFDTKKDNEEDALLHVINH-GSSIHLIGWLS-KKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred ecccceEEeeecCCCcchhhHHHhhcc-cceeeeeeeec-CCcceEEEEEccCceeEEEccC
Confidence 999999999998763 234455567 78899999987 55 3577888999999999876
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-14 Score=122.36 Aligned_cols=252 Identities=13% Similarity=0.119 Sum_probs=157.5
Q ss_pred CCccceeeEEEEeecC-CCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC---CceeE
Q 017601 89 CPHRSEVQSIALAETD-SSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS---QWSMA 164 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~-~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~---~~~~~ 164 (369)
-.|...|..++|.+=. .+...+.|++..+ ++.++....... ...++.-.....++...-++|+-+ ++-++
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~-----ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~l 108 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGG-----IRLLQSYADEDHDESFYTCSWSYDSNTGNPFL 108 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccc-----eeeeeeccCCCCCcceEEEEEEecCCCCCeeE
Confidence 4677888888887411 1124555655443 555665543210 111111111112222334666432 23466
Q ss_pred EEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee---ccCC
Q 017601 165 AVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC---GSVG 241 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~---~~~~ 241 (369)
|++ +.-|.|+|.|..+....-....|...++-+...|..| +.++++|.|..|+||++++. .|+..+- +| .
T Consensus 109 a~~-G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~--qlvls~SkD~svRlwnI~~~---~Cv~VfGG~egH-r 181 (385)
T KOG1034|consen 109 AAG-GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP--QLVLSASKDHSVRLWNIQTD---VCVAVFGGVEGH-R 181 (385)
T ss_pred Eee-cceeEEEEEecchhhhccceeccCccchhhhcCCCCC--cEEEEecCCceEEEEeccCC---eEEEEecccccc-c
Confidence 776 7999999999864433333334556666666655444 68999999999999999998 8887765 34 6
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCce------ee-------------------eec---ccccc---------
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS------AL-------------------SRW---VHCSK--------- 283 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~------~~-------------------~~~---~~h~~--------- 283 (369)
+.|.++.|+++| +|++++.|.++++|++...+ .. ..+ ..| .
T Consensus 182 deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH-rnyVDCvrw~ 260 (385)
T KOG1034|consen 182 DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH-RNYVDCVRWF 260 (385)
T ss_pred CcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc-cchHHHHHHH
Confidence 899999999999 99999999999999987210 00 000 011 1
Q ss_pred ---------------------------------------------CceEEE--EEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 284 ---------------------------------------------YEITGL--SFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 284 ---------------------------------------------~~v~~l--~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
..|.-+ +|.| -++.||.|...|.|.+||++..
T Consensus 261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCC
Confidence 112223 3445 5678999999999999999885
Q ss_pred ce--eEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECC
Q 017601 317 SK--VFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 317 ~~--~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+. ..++..+..-..+.. +.|+.+|+...+|++|.-||..
T Consensus 340 ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 340 EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 44 222221111011222 3499999999999999999864
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=143.63 Aligned_cols=191 Identities=15% Similarity=0.106 Sum_probs=143.7
Q ss_pred eeEEEE-ecccceEEEEeCCcce----EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC----Cce
Q 017601 162 SMAAVA-RSFSKSIDVYDQDIHL----RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN----GGC 232 (369)
Q Consensus 162 ~~~a~~-~s~d~~i~lwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~----~~~ 232 (369)
..+|+- .+.-|.|.||++.+.- ..+..+.+...+..++|-||++ .+|+.+++||.|+||-+..+.. ..+
T Consensus 592 ~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~--~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 592 KRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDD--ERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred ceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCCh--HHeeecccCceEEEEEeccCCCCcccCCc
Confidence 344441 1557899999986432 2234445667778888888855 6899999999999999875421 123
Q ss_pred eeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 233 LHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
...+..| +..|+++.|+|-. .|++++.|-+|++||+++++....+.+| ++.|.+++||| ||+.+++.+.|++|++
T Consensus 670 e~~lt~h-~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH-tdqIf~~AWSp-dGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 670 EKILTIH-GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH-TDQIFGIAWSP-DGRRIATVCKDGTLRV 746 (1012)
T ss_pred ceeeecc-cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC-cCceeEEEECC-CCcceeeeecCceEEE
Confidence 3445656 7899999999987 9999999999999999999999999999 99999999999 9999999999999999
Q ss_pred EECcCCc-eeEEEEcC--CCeeeeeEcCCCCEEEEEeCC----CcEEEEECCCC
Q 017601 311 GQWRESS-KVFAFRGD--SNWLGFSKCSNRDVLGGWSDS----GSIFVADVVAK 357 (369)
Q Consensus 311 wd~~~~~-~~~~~~g~--~~~~~~~~~~d~~~l~sgs~d----g~I~iWd~~~~ 357 (369)
++.+.++ .++.-.|. .+-..+....||++++..+.| +.|.+||..+-
T Consensus 747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 9988743 22222221 121334445588888777766 57788887653
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.4e-15 Score=130.92 Aligned_cols=211 Identities=13% Similarity=0.152 Sum_probs=149.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc--cccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL--TYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
.++|++.|-.++|+|-+ ..+|||++.|.+|.+|++-......+.. ...+.+|...+ --++|+|...+.++
T Consensus 77 v~GHt~~vLDi~w~Pfn---D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrV-----g~V~wHPtA~NVLl 148 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFN---DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRV-----GLVQWHPTAPNVLL 148 (472)
T ss_pred ccCccccccccccCccC---CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeE-----EEEeecccchhhHh
Confidence 58999999999999964 4799999999999999997653322211 11223332222 24899999999999
Q ss_pred EEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
++ +.|.+|.||+.+.....+. +.|+..+..+. |+-||+.|++++.|..|+|||.|++ ..+..-..|.+..-.
T Consensus 149 sa-g~Dn~v~iWnv~tgeali~-l~hpd~i~S~s---fn~dGs~l~TtckDKkvRv~dpr~~---~~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 149 SA-GSDNTVSIWNVGTGEALIT-LDHPDMVYSMS---FNRDGSLLCTTCKDKKVRVIDPRRG---TVVSEGVAHEGAKPA 220 (472)
T ss_pred hc-cCCceEEEEeccCCceeee-cCCCCeEEEEE---eccCCceeeeecccceeEEEcCCCC---cEeeecccccCCCcc
Confidence 98 8999999999986555444 33776655554 3346889999999999999999998 677665433244444
Q ss_pred EEEECCCC-cEEEE---eCCCcEEEEeCCCc-ee--eeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCc
Q 017601 246 AVCSSSTG-NIAVA---GADRTVTIYDPRRW-SA--LSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESS 317 (369)
Q Consensus 246 ~v~~sp~g-~lasg---s~D~~v~vwD~~~~-~~--~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~ 317 (369)
-+-|-.+| .+-+| ..++.+.|||..+. ++ +.++... ..|.-==|.| |.++++.+| .|+.||.|.+....
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--nGvl~PFyD~-dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS--NGVLLPFYDP-DTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC--CceEEeeecC-CCCEEEEEecCCcceEEEEecCCC
Confidence 45577778 44444 35889999998773 23 3344433 4555556678 878877666 59999999998754
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.6e-15 Score=138.51 Aligned_cols=226 Identities=15% Similarity=0.155 Sum_probs=157.7
Q ss_pred EecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc---------ceE
Q 017601 114 VDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI---------HLR 184 (369)
Q Consensus 114 ~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~---------~~~ 184 (369)
.+..|.|-|+++...+.-.++..-. -.....+..+.|.|-++..+|++ ..|+.|+||.+.. ...
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~------l~Ngt~vtDl~WdPFD~~rLAVa-~ddg~i~lWr~~a~gl~e~~~tPe~ 671 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPG------LFNGTLVTDLHWDPFDDERLAVA-TDDGQINLWRLTANGLPENEMTPEK 671 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccc------cccCceeeecccCCCChHHeeec-ccCceEEEEEeccCCCCcccCCcce
Confidence 3567899999998653322211001 11122367899999999999999 8999999997531 111
Q ss_pred EEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCc
Q 017601 185 TLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRT 263 (369)
Q Consensus 185 ~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~ 263 (369)
.+ ..|...+.++.++|... ..|++++.|.+|+|||+++. +...++.+| ++.|..++|||+| ++|+-+.||+
T Consensus 672 ~l--t~h~eKI~slRfHPLAa--dvLa~asyd~Ti~lWDl~~~---~~~~~l~gH-tdqIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 672 IL--TIHGEKITSLRFHPLAA--DVLAVASYDSTIELWDLANA---KLYSRLVGH-TDQIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred ee--ecccceEEEEEecchhh--hHhhhhhccceeeeeehhhh---hhhheeccC-cCceeEEEECCCCcceeeeecCce
Confidence 11 22556788888877654 47888899999999999988 666678877 8999999999999 9999999999
Q ss_pred EEEEeCCCc-eeeeeccccccCceEEEEEcCCCCCEEEEEECCC----eEEEEECcC--CceeEEEEcCCCeeeeeEcC-
Q 017601 264 VTIYDPRRW-SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY----EVFCGQWRE--SSKVFAFRGDSNWLGFSKCS- 335 (369)
Q Consensus 264 v~vwD~~~~-~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~----~i~vwd~~~--~~~~~~~~g~~~~~~~~~~~- 335 (369)
|+||..|++ +++.+-.+.....--.+.|-- ||++++..+.|. .|.+||.++ ...+.+..-+. ....-.+
T Consensus 744 ~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--aps~LvP~ 820 (1012)
T KOG1445|consen 744 LRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--APSPLVPH 820 (1012)
T ss_pred EEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc--cCcccccc
Confidence 999999984 455554444223344566776 999999988875 578888776 23333332121 0000111
Q ss_pred ----CCCEEEEEeCCCcEEEEECCCC
Q 017601 336 ----NRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 336 ----d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.+-++++|-.|..|++|.+--.
T Consensus 821 YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 821 YDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred ccCCCceEEEecCCCceEEEEEecCC
Confidence 3557889999999999987543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-13 Score=125.36 Aligned_cols=246 Identities=10% Similarity=0.035 Sum_probs=145.1
Q ss_pred CccceeeEEEEeecCCCCceEE-EEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 90 PHRSEVQSIALAETDSSGYMVL-GSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~l-as~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+.+....++++|++ ..| ++....+.|.+|+++.. ..+.. ..... . .+....++|+|++..++++.
T Consensus 32 ~~~~~~~~l~~spd~----~~lyv~~~~~~~i~~~~~~~~-g~l~~-~~~~~-~-----~~~p~~i~~~~~g~~l~v~~- 98 (330)
T PRK11028 32 DVPGQVQPMVISPDK----RHLYVGVRPEFRVLSYRIADD-GALTF-AAESP-L-----PGSPTHISTDHQGRFLFSAS- 98 (330)
T ss_pred ecCCCCccEEECCCC----CEEEEEECCCCcEEEEEECCC-CceEE-eeeec-C-----CCCceEEEECCCCCEEEEEE-
Confidence 344567789999984 344 34445788999998732 11110 00000 0 01234799999665544444
Q ss_pred cccceEEEEeCCcc---eEEEEee---eCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCce--eeeeecc
Q 017601 169 SFSKSIDVYDQDIH---LRTLRTL---WYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGC--LHRICGS 239 (369)
Q Consensus 169 s~d~~i~lwd~~~~---~~~~~~~---~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~--~~~~~~~ 239 (369)
..++.|.+||.+.. ....... .++..+. ++|++..++++. .++.|.+||+.+...... .......
T Consensus 99 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~------~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~ 172 (330)
T PRK11028 99 YNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSAN------IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV 172 (330)
T ss_pred cCCCeEEEEEECCCCCCCCceeeccCCCcccEeE------eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC
Confidence 56899999987521 1111111 1222222 335666765554 579999999976311110 0111111
Q ss_pred CCCcEEEEEECCCC-cEEEEeC-CCcEEEEeCCC--c--eeeeecccc---c--cCceEEEEEcCCCCCEEEEEEC-CCe
Q 017601 240 VGDILYAVCSSSTG-NIAVAGA-DRTVTIYDPRR--W--SALSRWVHC---S--KYEITGLSFSSIDSNYIYVQGV-DYE 307 (369)
Q Consensus 240 ~~~~v~~v~~sp~g-~lasgs~-D~~v~vwD~~~--~--~~~~~~~~h---~--~~~v~~l~~sp~d~~~l~s~s~-D~~ 307 (369)
.+.....++|+|+| +++++.. +++|.+||+.. + +.+.++..+ . ......+.|+| ++++++++.. ++.
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~ 251 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASL 251 (330)
T ss_pred CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCe
Confidence 13456789999999 7767665 99999999973 2 333333221 0 11234689999 9999888754 789
Q ss_pred EEEEECcCCceeEEEEcCC----CeeeeeEcCCCCEEEEEeC-CCcEEEEECC
Q 017601 308 VFCGQWRESSKVFAFRGDS----NWLGFSKCSNRDVLGGWSD-SGSIFVADVV 355 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~----~~~~~~~~~d~~~l~sgs~-dg~I~iWd~~ 355 (369)
|.+|++........+.++. .-..+...+||++|+++.. +++|.+|++.
T Consensus 252 I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 252 ISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999996543222222221 0124455679999887776 8999999874
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-13 Score=131.71 Aligned_cols=294 Identities=14% Similarity=0.131 Sum_probs=185.8
Q ss_pred EEEEeCCeEEEEEEeCCc-hhhhcCCCcc-ccccCccc---c-cccccc-cCCccceeeEEEEeecCCCCceEEEEEecC
Q 017601 45 VYIASGCHLYKLQVMMDD-WFVSEGKDSL-LIPEQTPV---M-DSSMLN-RCPHRSEVQSIALAETDSSGYMVLGSVDSY 117 (369)
Q Consensus 45 ~~~as~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~---~-~~~~~~-~~~H~~~V~~l~~s~~~~~~~~~las~d~~ 117 (369)
+++.-.+=||.+.-.++. .+++..-+.. .+|.+.+. . ..-++. .-+..+.-+..-|+|++ ..+.+-+..
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~----~~ii~~g~~ 337 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS----NVIIAHGRT 337 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC----CEEEEeccc
Confidence 344555556666766665 3333333322 22222111 1 111221 12445678889999974 677778889
Q ss_pred CcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeee----CCc
Q 017601 118 GHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLW----YPS 193 (369)
Q Consensus 118 g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~----~~~ 193 (369)
|-.++|..... ..-.....+.+|. .++.+++|+|.++ ++.+. |-|.+-|||-.....+..+... |..
T Consensus 338 Gg~hlWkt~d~--~~w~~~~~iSGH~-----~~V~dv~W~psGe-flLsv-s~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 338 GGFHLWKTKDK--TFWTQEPVISGHV-----DGVKDVDWDPSGE-FLLSV-SLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred CcEEEEeccCc--cceeecccccccc-----ccceeeeecCCCC-EEEEe-ccccceeeecccccccceeeecccccccc
Confidence 99999982211 1001111122222 2466899999766 55555 7999999996542222233322 223
Q ss_pred ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc----------c----------------------------c--CC---
Q 017601 194 SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM----------K----------------------------E--NG--- 230 (369)
Q Consensus 194 ~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~----------~----------------------------~--~~--- 230 (369)
.+..+...+ .+..|+++++...+|+|+... + + .+
T Consensus 409 Dl~c~~~vn---~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~ 485 (764)
T KOG1063|consen 409 DLTCLSFVN---EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEA 485 (764)
T ss_pred cceeeehcc---CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccc
Confidence 333333221 245788888888888887521 0 0 00
Q ss_pred ------------------------------ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC-----cEEEEeCCCcee
Q 017601 231 ------------------------------GCLHRICGSVGDILYAVCSSSTG-NIAVAGADR-----TVTIYDPRRWSA 274 (369)
Q Consensus 231 ------------------------------~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~-----~v~vwD~~~~~~ 274 (369)
..++.+-+| +..|++++.+|+| ++|++.... .|++|+..++..
T Consensus 486 ~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~ 564 (764)
T KOG1063|consen 486 AVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ 564 (764)
T ss_pred ceeeecccccCchhccCCChHHHHHHhccchhhHHhccC-ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence 001112223 5679999999999 899886543 589999999999
Q ss_pred eeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc----eeEEEEcCCCee-eeeEcCCCCEEEEEeCCCcE
Q 017601 275 LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS----KVFAFRGDSNWL-GFSKCSNRDVLGGWSDSGSI 349 (369)
Q Consensus 275 ~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~----~~~~~~g~~~~~-~~~~~~d~~~l~sgs~dg~I 349 (369)
.+.+.+| .-.|+.++||| |+++|++.|.|+++.+|...... .....+.|++.. .....|++.+++++|.|.+|
T Consensus 565 ~~~L~~H-sLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~V 642 (764)
T KOG1063|consen 565 VQELEGH-SLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKV 642 (764)
T ss_pred hheeccc-ceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceE
Confidence 9999999 99999999999 99999999999999999986521 122246787432 11225588899999999999
Q ss_pred EEEECCCC
Q 017601 350 FVADVVAK 357 (369)
Q Consensus 350 ~iWd~~~~ 357 (369)
++|.....
T Consensus 643 kVW~~~~~ 650 (764)
T KOG1063|consen 643 KVWEEPDL 650 (764)
T ss_pred EEEeccCc
Confidence 99988766
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-14 Score=131.36 Aligned_cols=237 Identities=16% Similarity=0.139 Sum_probs=165.7
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCce-eEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS-MAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~-~~a~ 166 (369)
+.+|++.|.+|...|. +..||+++.+|+|++|.+.++. +.+.++- .+-+.+|+|+|.... ++|+
T Consensus 396 yrGHtg~Vr~iSvdp~----G~wlasGsdDGtvriWEi~TgR-----cvr~~~~------d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPS----GEWLASGSDDGTVRIWEIATGR-----CVRTVQF------DSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred EeccCCeEEEEEecCC----cceeeecCCCCcEEEEEeecce-----EEEEEee------cceeEEEEecCCCCceeEEE
Confidence 6799999999999986 4899999999999999998772 2222221 113568999996553 3444
Q ss_pred EecccceEEEEeC--Cc----------------------------------ceEEE-EeeeCCcceeeeccCCCCCCCCc
Q 017601 167 ARSFSKSIDVYDQ--DI----------------------------------HLRTL-RTLWYPSSLNFVQNLSPVNGGPN 209 (369)
Q Consensus 167 ~~s~d~~i~lwd~--~~----------------------------------~~~~~-~~~~~~~~v~~~~~~~~~~~~~~ 209 (369)
+ ....+-|-+. +. ....+ ....++..+..+.|+. .|.+
T Consensus 461 A--~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr---kGDY 535 (733)
T KOG0650|consen 461 A--VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR---KGDY 535 (733)
T ss_pred E--ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec---CCce
Confidence 4 3333444332 00 00000 1122444455555543 4667
Q ss_pred EEEEEc---CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCc
Q 017601 210 MLAVTE---GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYE 285 (369)
Q Consensus 210 lla~s~---d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~ 285 (369)
|+++.. ...|.|+++... .....|.-. .+.|.++.|+|.. +|++++ -+.|+|||+.+.+.+.++..- ...
T Consensus 536 latV~~~~~~~~VliHQLSK~---~sQ~PF~ks-kG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg-~kw 609 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKR---KSQSPFRKS-KGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTG-SKW 609 (733)
T ss_pred EEEeccCCCcceEEEEecccc---cccCchhhc-CCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcC-Cee
Confidence 777653 357999999866 333334332 4789999999999 777766 468999999998888887766 678
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEE
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd 353 (369)
|.+++.+| .|..|+.++.|+.+..+|+.- .+..++++-|. ..+.. -..-.++++|+.||++.|+.
T Consensus 610 iS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~--~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 610 ISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE--KAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--hhhhhhhhccccceeeeecCCCcEEEEe
Confidence 99999999 999999999999999999976 45666677676 33333 22456899999999999985
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.7e-14 Score=121.57 Aligned_cols=247 Identities=12% Similarity=0.110 Sum_probs=164.6
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceE
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSI 174 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i 174 (369)
-.++.|++-+ ..||.+-.+|+|.+||+.+..- ...+.+|-.+ +++++||++ +..++++ |.|..|
T Consensus 26 a~~~~Fs~~G----~~lAvGc~nG~vvI~D~~T~~i-----ar~lsaH~~p-----i~sl~WS~d-gr~Llts-S~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWG----DYLAVGCANGRVVIYDFDTFRI-----ARMLSAHVRP-----ITSLCWSRD-GRKLLTS-SRDWSI 89 (405)
T ss_pred cceEEeccCc----ceeeeeccCCcEEEEEccccch-----hhhhhccccc-----eeEEEecCC-CCEeeee-cCCcee
Confidence 6799999974 7999999999999999987631 1222333332 568999995 4566777 899999
Q ss_pred EEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC--CCcEEEEEEC
Q 017601 175 DVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV--GDILYAVCSS 250 (369)
Q Consensus 175 ~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~--~~~v~~v~~s 250 (369)
.+||+- ...+.++ .+..+.+.+++|. +.+..+++--+..-.+-++..+. ..++. ..... .....+..|.
T Consensus 90 ~lwDl~~gs~l~rir---f~spv~~~q~hp~--k~n~~va~~~~~sp~vi~~s~~~-h~~Lp-~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIR---FDSPVWGAQWHPR--KRNKCVATIMEESPVVIDFSDPK-HSVLP-KDDDGDLNSSASHGVFD 162 (405)
T ss_pred EEEeccCCCceeEEE---ccCccceeeeccc--cCCeEEEEEecCCcEEEEecCCc-eeecc-CCCcccccccccccccc
Confidence 999974 3444443 3344555665553 23455554444434444444321 01111 11110 1122233588
Q ss_pred CCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC-------Cc--eeE
Q 017601 251 STG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-------SS--KVF 320 (369)
Q Consensus 251 p~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-------~~--~~~ 320 (369)
+.| ++++|...|.+.++|..+.+++..++-.....|.++.|+- .|+.|+..+.|+.||.++++. ++ +.+
T Consensus 163 r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 163 RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred CCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence 999 9999999999999999999999988866237899999998 999999999999999999873 11 112
Q ss_pred EEE---cCCCeeeeeEcCCCCEEEEEeC-CCcEEEEECCCCcchhhhccc
Q 017601 321 AFR---GDSNWLGFSKCSNRDVLGGWSD-SGSIFVADVVAKENEISALKG 366 (369)
Q Consensus 321 ~~~---g~~~~~~~~~~~d~~~l~sgs~-dg~I~iWd~~~~~~~~~~l~g 366 (369)
.+. ....|..+..+.||.+++.|+. -..++||.-..|. .+..|.|
T Consensus 242 K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs-LVKILhG 290 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS-LVKILHG 290 (405)
T ss_pred HHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc-eeeeecC
Confidence 221 1224555555559999887775 4789999987774 3444443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=123.20 Aligned_cols=206 Identities=11% Similarity=0.102 Sum_probs=152.8
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
-++.|..++.... .|.++..+|++.+|....+...... ...+.. ..+...+.-++..+.++|+| +.
T Consensus 104 ~~~~I~gl~~~dg------~Litc~~sG~l~~~~~k~~d~hss~-l~~la~------g~g~~~~r~~~~~p~Iva~G-Gk 169 (412)
T KOG3881|consen 104 GTKSIKGLKLADG------TLITCVSSGNLQVRHDKSGDLHSSK-LIKLAT------GPGLYDVRQTDTDPYIVATG-GK 169 (412)
T ss_pred ccccccchhhcCC------EEEEEecCCcEEEEeccCCcccccc-ceeeec------CCceeeeccCCCCCceEecC-ch
Confidence 4566777776542 5566688899999988744210000 000100 12344566778788888887 77
Q ss_pred c--ceEEEEeCCcceEEEEeee------------CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee
Q 017601 171 S--KSIDVYDQDIHLRTLRTLW------------YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 171 d--~~i~lwd~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
. ..++|||.....+.+.... -.+.+.|+... + ...|++++.-++|++||.+.+. .++..+
T Consensus 170 e~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~---~-~~~fat~T~~hqvR~YDt~~qR--RPV~~f 243 (412)
T KOG3881|consen 170 ENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGS---P-NYKFATITRYHQVRLYDTRHQR--RPVAQF 243 (412)
T ss_pred hcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCC---C-CceEEEEecceeEEEecCcccC--cceeEe
Confidence 7 8899999876654443221 12344455421 1 5689999999999999999764 678777
Q ss_pred eccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeee-ccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 237 CGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSR-WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~-~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
... ..+++++...|.| .+++|..-+.+..||+|+++.+.. +.+. .+.|+++..+| ...+++++|.|+.+||+|++
T Consensus 244 d~~-E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih~hp-~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 244 DFL-ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIHCHP-THPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred ccc-cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEEEcC-CCceEEeeccceeEEEeecc
Confidence 755 6899999999999 999999999999999999998876 8888 99999999999 88999999999999999999
Q ss_pred CCcee
Q 017601 315 ESSKV 319 (369)
Q Consensus 315 ~~~~~ 319 (369)
+.+++
T Consensus 321 trkll 325 (412)
T KOG3881|consen 321 TRKLL 325 (412)
T ss_pred cchhh
Confidence 85443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-13 Score=134.49 Aligned_cols=240 Identities=15% Similarity=0.127 Sum_probs=152.7
Q ss_pred EEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEE-CCCCceeEEEEecccceEE
Q 017601 97 SIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCF-SPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 97 ~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~p~~~~~~a~~~s~d~~i~ 175 (369)
.+.|+|=+ ..+++.|..-.+.+||...+.. +. .|.- .......++.+.+ +.++..++.++ +.||.|+
T Consensus 1069 ~~~~hpf~----p~i~~ad~r~~i~vwd~e~~~~-l~--~F~n----~~~~~t~Vs~l~liNe~D~aLlLta-s~dGvIR 1136 (1387)
T KOG1517|consen 1069 TLKFHPFE----PQIAAADDRERIRVWDWEKGRL-LN--GFDN----GAFPDTRVSDLELINEQDDALLLTA-SSDGVIR 1136 (1387)
T ss_pred eeeecCCC----ceeEEcCCcceEEEEecccCce-ec--cccC----CCCCCCccceeeeecccchhheeee-ccCceEE
Confidence 45555532 4677778777899999986521 11 1111 1111223555665 55566778887 9999999
Q ss_pred EEeCC-------cceEEEEeeeC----Ccce-eeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 176 VYDQD-------IHLRTLRTLWY----PSSL-NFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 176 lwd~~-------~~~~~~~~~~~----~~~v-~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
||+-- +.+.....+.. .... ..+.|- ...+.|+++|+-..|+|||.... ..++.+.......
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq---Q~~G~Ll~tGd~r~IRIWDa~~E---~~~~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ---QQSGHLLVTGDVRSIRIWDAHKE---QVVADIPYGSSTL 1210 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCCCeeeehh---hhCCeEEecCCeeEEEEEecccc---eeEeecccCCCcc
Confidence 99642 12222222211 0000 111221 13568888888889999999876 5666554332466
Q ss_pred EEEEEEC-CCC-cEEEEeCCCcEEEEeCCCc---eeeeeccccccCc--eEEEEEcCCCCCE-EEEEECCCeEEEEECcC
Q 017601 244 LYAVCSS-STG-NIAVAGADRTVTIYDPRRW---SALSRWVHCSKYE--ITGLSFSSIDSNY-IYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 244 v~~v~~s-p~g-~lasgs~D~~v~vwD~~~~---~~~~~~~~h~~~~--v~~l~~sp~d~~~-l~s~s~D~~i~vwd~~~ 315 (369)
|+++.-+ +.| .+++|-.||+|++||.|.. ..+..++.| .+. |..+.+.+ .|-. |+|||.||.|++||++.
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h-~~~~~Iv~~slq~-~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREH-NDVEPIVHLSLQR-QGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeeccc-CCcccceeEEeec-CCCcceeeeccCCeEEEEeccc
Confidence 7777443 335 9999999999999999873 346778888 777 99999998 5544 99999999999999998
Q ss_pred CceeEEE--EcCCCe----eeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 316 SSKVFAF--RGDSNW----LGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 316 ~~~~~~~--~g~~~~----~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
......+ ..|..+ ..+..-.....||+|+. +.|+||++...
T Consensus 1289 ~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1289 SSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred CcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence 4222111 111100 12222337789999999 99999998644
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-13 Score=135.14 Aligned_cols=261 Identities=15% Similarity=0.123 Sum_probs=174.6
Q ss_pred ccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcc----ccccccCCCCCCCCCCeeEEEECCCC
Q 017601 85 MLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDR----LTYSVLPQDCGVGEGSWSGLCFSPSQ 160 (369)
Q Consensus 85 ~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~p~~ 160 (369)
..++..|...|..++.++++ ..+.++++.+|+|++|+..+-..+... ..|.. .+.-+..+.+.+ .
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~---~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-------~~sr~~~vt~~~-~ 1109 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEH---TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-------EGSRVEKVTMCG-N 1109 (1431)
T ss_pred eehhhhccccccceeecCCC---CceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-------cCCceEEEEecc-C
Confidence 33466899999999998874 479999999999999999754322111 11211 011244677777 4
Q ss_pred ceeEEEEecccceEEEEeCCcc-eEEE-----Ee--eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 161 WSMAAVARSFSKSIDVYDQDIH-LRTL-----RT--LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~~-~~~~-----~~--~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
...+|++ +.||.|++.+++.. ...+ +. ......+.......+......++.+..-+.+..||+++..+...
T Consensus 1110 ~~~~Av~-t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1110 GDQFAVS-TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCeEEEE-cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 4578888 89999999988641 1111 11 11122222222111111112566778889999999998743222
Q ss_pred eeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCC--CEEEEEEC--CCe
Q 017601 233 LHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDS--NYIYVQGV--DYE 307 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~--~~l~s~s~--D~~ 307 (369)
++.-..| +.|++++.+|.+ ++++|...|.+-+||+|=+.++..|......+|+.+..+|.-+ ...++++. -+.
T Consensus 1189 lk~~~~h--G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1189 LKNQLRH--GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred hhcCccc--cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence 3222234 889999999999 9999999999999999999999888743268899998888544 56666554 679
Q ss_pred EEEEECcCCceeEEEEcC-C----------C-------eeeeeEc-C-CCCEEEEEeCCCcEEEEECCCCcc
Q 017601 308 VFCGQWRESSKVFAFRGD-S----------N-------WLGFSKC-S-NRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~-~----------~-------~~~~~~~-~-d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
|-+|++.++.+.+.+..- . + ..++..+ + -+.++.+|+.|..|+.||....+.
T Consensus 1267 vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 999999998777777432 1 0 0011111 1 456889999999999999887653
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=122.07 Aligned_cols=254 Identities=12% Similarity=0.026 Sum_probs=167.2
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+-|+.|.|+.+ ...|+++..+.++.+|+++...-.-......+..+ +....+.+++|.. +...+.++
T Consensus 52 ~~~H~GCiNAlqFS~N----~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~---~H~SNIF~L~F~~-~N~~~~SG 123 (609)
T KOG4227|consen 52 VREHTGCINALQFSHN----DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH---PHRSNIFSLEFDL-ENRFLYSG 123 (609)
T ss_pred hhhhccccceeeeccC----CeEEeecCCcceeeeechHHHHhhcCCCCceeccC---ccccceEEEEEcc-CCeeEecC
Confidence 4689999999999987 48999999999999999874310000000111111 1123466899988 55566666
Q ss_pred ecccceEEEEeCCcceEEEEeeeCC---cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYP---SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
..+++|.+-|+..... +....+. ..+--+..+ |-++.|++++.++.|.+||.|...+.....-... ++...
T Consensus 124 -~~~~~VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~---P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-~~~~F 197 (609)
T KOG4227|consen 124 -ERWGTVIKHDIETKQS-IYVANENNNRGDVYHMDQH---PTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-SGKNF 197 (609)
T ss_pred -CCcceeEeeeccccee-eeeecccCcccceeecccC---CCCceEEEEecCceEEEEeccCCCCCCceeeecC-CCccc
Confidence 8999999999864322 2222222 233333333 4467899999999999999997642222222222 25789
Q ss_pred EEEEECCCC--cEEEEeCCCcEEEEeCCCce-eeeecccc--c---cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 245 YAVCSSSTG--NIAVAGADRTVTIYDPRRWS-ALSRWVHC--S---KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 245 ~~v~~sp~g--~lasgs~D~~v~vwD~~~~~-~~~~~~~h--~---~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
+++.|+|.. +|++++..+-+.|||.|... ++....+. + ..+-.++.|+| +|+.|++--.-..-.+||+-..
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecc
Confidence 999999998 89999999999999998732 23222211 0 22347899999 9999988776667778898775
Q ss_pred ce-eEEEEcCC----CeeeeeEcC--CCCEEEEEeCCCcEEEEECCC
Q 017601 317 SK-VFAFRGDS----NWLGFSKCS--NRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 317 ~~-~~~~~g~~----~~~~~~~~~--d~~~l~sgs~dg~I~iWd~~~ 356 (369)
+| ++.+.... +...+..|. +...+++||.+-.|++|.+..
T Consensus 277 R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 277 RCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred cceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCC
Confidence 44 23332111 112222232 556699999999999999764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-13 Score=119.22 Aligned_cols=209 Identities=14% Similarity=0.101 Sum_probs=145.0
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcc--------------eEEEEeeeCCc---ceeeeccCCCCCCCCcEEEEEc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIH--------------LRTLRTLWYPS---SLNFVQNLSPVNGGPNMLAVTE 215 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~--------------~~~~~~~~~~~---~v~~~~~~~~~~~~~~lla~s~ 215 (369)
++.|+|++. .|++- +.|..+++|++... ...++.....+ .+.+.......|+...+++.+.
T Consensus 54 gckWSPDGS-ciL~~-sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 54 GCKWSPDGS-CILSL-SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred cceeCCCCc-eEEee-cccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 689999655 55555 79999999986311 11111111111 1112111222355556666778
Q ss_pred CCeEEEEeCCcccCCceeeeeeccC-CCcEEEEEECCCC-cEEEEeCCCcEEEEeC-CCceee--e-ecc----ccccCc
Q 017601 216 GCQLTIWDLRMKENGGCLHRICGSV-GDILYAVCSSSTG-NIAVAGADRTVTIYDP-RRWSAL--S-RWV----HCSKYE 285 (369)
Q Consensus 216 d~~v~iwD~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g-~lasgs~D~~v~vwD~-~~~~~~--~-~~~----~h~~~~ 285 (369)
+.-|+|||.-+++.....+.+.+.. -....+++|+||| +|.+ +..+.|++||+ |.|.-. . ++. +. .+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq-~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ-KGI 209 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccc-cce
Confidence 9999999999984322222233220 1245689999999 6655 56789999999 554322 1 221 33 567
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE---cCCCCEEEEEeC-CCcEEEEECCCCcchh
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK---CSNRDVLGGWSD-SGSIFVADVVAKENEI 361 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~-dg~I~iWd~~~~~~~~ 361 (369)
|.+++|||.+...++.++.-.++-|+.....++++.+.||. .+++. +.+|+.|++|+. |-.|-.||++.-+..+
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~--gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG--GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC--CCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 89999999888899999999999999998999999999998 66766 669999999997 7799999999887777
Q ss_pred hhcccC
Q 017601 362 SALKGL 367 (369)
Q Consensus 362 ~~l~g~ 367 (369)
-+|.+|
T Consensus 288 ~~L~rh 293 (406)
T KOG2919|consen 288 YALERH 293 (406)
T ss_pred hhhhhh
Confidence 777665
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-14 Score=119.20 Aligned_cols=243 Identities=17% Similarity=0.137 Sum_probs=155.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|+++.|..++ +|.+++..|-|++|.+++..... .+. .++..-++++.--|+ + .+.+-
T Consensus 10 LRp~~~~v~s~~fqa~~-----rL~sg~~~G~V~~w~lqt~r~~~---~~r------~~g~~~it~lq~~p~-d-~l~tq 73 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANE-----RLMSGLSVGIVKMWVLQTERDLP---LIR------LFGRLFITNLQSIPN-D-SLDTQ 73 (323)
T ss_pred eccccchheehhhccch-----hhhcccccceEEEEEeecCccch---hhh------hhccceeeceeecCC-c-chhhc
Confidence 45999999999998763 69999999999999999763211 111 011111334444452 2 22332
Q ss_pred ecccceEEEEeCCc----ceEE------------EE--------eee---------------CC--------------cc
Q 017601 168 RSFSKSIDVYDQDI----HLRT------------LR--------TLW---------------YP--------------SS 194 (369)
Q Consensus 168 ~s~d~~i~lwd~~~----~~~~------------~~--------~~~---------------~~--------------~~ 194 (369)
+.|..+.+|+++. .++. +. ... .+ ..
T Consensus 74 -gRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 74 -GRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGS 152 (323)
T ss_pred -CCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCc
Confidence 5566666666531 0000 00 000 00 00
Q ss_pred eeeeccCCCCCCCC-c-EEEEEcCCeEEEEeCCcccCC-------ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcE
Q 017601 195 LNFVQNLSPVNGGP-N-MLAVTEGCQLTIWDLRMKENG-------GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTV 264 (369)
Q Consensus 195 v~~~~~~~~~~~~~-~-lla~s~d~~v~iwD~~~~~~~-------~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v 264 (369)
+.... .++. ++. . ++++-++|.|.+||+.++... +.......+ ..+|.++.|.+.- .=++|+.+..+
T Consensus 153 vmc~~-~~~~-c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash-~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 153 VMCQD-KDHA-CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASH-KQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred eeeee-cccc-ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhc-cCcceeeeechhhcCCcCCCccccc
Confidence 00111 0111 122 2 334557999999999886210 111122222 5899999998766 77889999999
Q ss_pred EEEeCCCc--eee--eeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeee---EcCCC
Q 017601 265 TIYDPRRW--SAL--SRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFS---KCSNR 337 (369)
Q Consensus 265 ~vwD~~~~--~~~--~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~---~~~d~ 337 (369)
.+|.+... .+. .+.+-. ...|..+.+-| |++.+|++|.|++||||.+++...+..+.-|+ .++. ..++.
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lk-npGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHs--agvn~vAfspd~ 305 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLK-NPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHS--AGVNAVAFSPDC 305 (323)
T ss_pred eeeeeccccCcccccceEEec-CCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhh--cceeEEEeCCCC
Confidence 99988652 221 122222 35689999999 99999999999999999999999999888887 4443 46688
Q ss_pred CEEEEEeCCCcEEEEEC
Q 017601 338 DVLGGWSDSGSIFVADV 354 (369)
Q Consensus 338 ~~l~sgs~dg~I~iWd~ 354 (369)
.++|++|.|++|.+|++
T Consensus 306 ~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 306 ELMAAASKDARISLWKL 322 (323)
T ss_pred chhhhccCCceEEeeec
Confidence 99999999999999986
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.7e-14 Score=128.27 Aligned_cols=254 Identities=18% Similarity=0.148 Sum_probs=173.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC-ceeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ-WSMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~~a~ 166 (369)
+.+|.|-|+.|.|... +.+|+|++.+-.+.+||.......+. +. .+|...+. -..|-|.. ...+++
T Consensus 138 L~~H~GcVntV~FN~~----Gd~l~SgSDD~~vv~WdW~~~~~~l~---f~-SGH~~Nvf-----QaKFiP~s~d~ti~~ 204 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQR----GDVLASGSDDLQVVVWDWVSGSPKLS---FE-SGHCNNVF-----QAKFIPFSGDRTIVT 204 (559)
T ss_pred ccCCCCccceeeeccc----CceeeccCccceEEeehhhccCcccc---cc-cccccchh-----hhhccCCCCCcCcee
Confidence 4689999999999886 37999999999999999886532211 11 11211111 13355543 345677
Q ss_pred EecccceEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC--
Q 017601 167 ARSFSKSIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG-- 241 (369)
Q Consensus 167 ~~s~d~~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~-- 241 (369)
+ +.||+|++=.+. ....+.+...|...+..++..|++| ..|+++++|+.++-.|+++......+..-..+..
T Consensus 205 ~-s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 205 S-SRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred c-cccCceeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 6 899999987653 2222334445556666666666666 5899999999999999998722111222222201
Q ss_pred CcEEEEEECCCC--cEEEEeCCCcEEEEeCCCce------eeeeccccc-----cCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 242 DILYAVCSSSTG--NIAVAGADRTVTIYDPRRWS------ALSRWVHCS-----KYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 242 ~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~------~~~~~~~h~-----~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
-..++++.+|-. .+++|+.|-.+++||.|+-. ++.++..|+ .-.|++++|+. ++.-|+++-.|-.|
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYNDEDI 360 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC-Cccceeeeecccce
Confidence 257899999988 99999999999999988622 234444331 13599999998 77777777789899
Q ss_pred EEEECcC--C----------ceeE-EEEcCCCeeeeeE----cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 309 FCGQWRE--S----------SKVF-AFRGDSNWLGFSK----CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 309 ~vwd~~~--~----------~~~~-~~~g~~~~~~~~~----~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+++.-.. + .... .|+||.+-..+.- -|...+++|||.-|.|+||+-++++
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 9995432 2 2333 3889985433322 2367899999999999999988876
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-14 Score=130.47 Aligned_cols=226 Identities=17% Similarity=0.111 Sum_probs=155.0
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccc-ccccCCCCCCCCCCeeEEEECCCCce
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLT-YSVLPQDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~ 162 (369)
.++++.+|.++|-|+++++. ...+.+++-||+|+.|++.....+-+... ..+..+-.++.+.-| ++++|+. ..
T Consensus 336 pi~tfraH~gPVl~v~v~~n----~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw-~l~~s~~-~~ 409 (577)
T KOG0642|consen 336 PILTFRAHEGPVLCVVVPSN----GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVW-LLALSST-KD 409 (577)
T ss_pred eeEEEecccCceEEEEecCC----ceEEEeeccCceeeeeccCCCCCcccccCcchhccceecccccee-eeeeccc-cc
Confidence 55667899999999999886 47999999999999998873322222110 012222334444445 7999995 45
Q ss_pred eEEEEecccceEEEEeCCcc-eEEEE---eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 163 MAAVARSFSKSIDVYDQDIH-LRTLR---TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~~-~~~~~---~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
.+++| +.|+++++|+.... ..++. ....|..+.+..+-+ ...++...-+.-.++|+... ..+..+..
T Consensus 410 ~Llsc-s~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~-----a~~~~s~~~~~~~~~~~ev~---s~~~~~~s 480 (577)
T KOG0642|consen 410 RLLSC-SSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRP-----AHSLASFRFGYTSIDDMEVV---SDLLIFES 480 (577)
T ss_pred ceeee-cCCceEEeeccCCcCccccCCccccCCcceEeeccchh-----Hhhhhhcccccccchhhhhh---hheeeccc
Confidence 68888 99999999986422 22221 122345555554311 12222222233344444444 33333321
Q ss_pred cC------CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 239 SV------GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 239 ~~------~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
.. ...++-+.++|++ +.+++..|+.|+++|..++.+++....| ...++++++-| +|-+|++++.|+.+++|
T Consensus 481 ~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~-~~svtslai~~-ng~~l~s~s~d~sv~l~ 558 (577)
T KOG0642|consen 481 SASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH-KDSVTSLAIDP-NGPYLMSGSHDGSVRLW 558 (577)
T ss_pred cCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeec-cceecceeecC-CCceEEeecCCceeehh
Confidence 10 1457788899999 9999999999999999999999999999 99999999999 99999999999999999
Q ss_pred ECcCCceeEEEEcCC
Q 017601 312 QWRESSKVFAFRGDS 326 (369)
Q Consensus 312 d~~~~~~~~~~~g~~ 326 (369)
.+....+......|.
T Consensus 559 kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 559 KLDVKTCVLESTAHR 573 (577)
T ss_pred hccchheeecccccc
Confidence 997766665555443
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-12 Score=109.65 Aligned_cols=233 Identities=14% Similarity=0.070 Sum_probs=154.9
Q ss_pred eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCC---CCccccccc--cCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 94 EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGK---DVDRLTYSV--LPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.|.+-+++|. ..+++++..+|.|.++.+..-.. ..++...-+ +.| ++.+..++|+. ..+.++
T Consensus 12 tvf~qa~sp~----~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqah-----dgpiy~~~f~d---~~Lls~- 78 (325)
T KOG0649|consen 12 TVFAQAISPS----KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAH-----DGPIYYLAFHD---DFLLSG- 78 (325)
T ss_pred HHHHHhhCCc----ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecccc-----CCCeeeeeeeh---hheeec-
Confidence 3555678886 47899999999999998864321 111111111 223 34456799973 355655
Q ss_pred cccceEEEEeCCcceE-----EEEeeeCC--------cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee
Q 017601 169 SFSKSIDVYDQDIHLR-----TLRTLWYP--------SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR 235 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~-----~~~~~~~~--------~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~ 235 (369)
.||.|+=|.-..... .+-....| -.++..- ..|..+.++.++.|+.+.-||+.++ +...+
T Consensus 79 -gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~---ldP~enSi~~AgGD~~~y~~dlE~G---~i~r~ 151 (325)
T KOG0649|consen 79 -GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMW---LDPSENSILFAGGDGVIYQVDLEDG---RIQRE 151 (325)
T ss_pred -cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeE---eccCCCcEEEecCCeEEEEEEecCC---EEEEE
Confidence 469999886432111 11001111 1122222 2345678888889999999999998 78888
Q ss_pred eeccCCCcEEEEEE-CCCCcEEEEeCCCcEEEEeCCCceeeeeccc---------cccCceEEEEEcCCCCCEEEEEECC
Q 017601 236 ICGSVGDILYAVCS-SSTGNIAVAGADRTVTIYDPRRWSALSRWVH---------CSKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 236 ~~~~~~~~v~~v~~-sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~---------h~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
+.+| .+.|.++.- +.++.+.+|++||+++|||.++++.+..+.. |....|-+++-+. ..|+.| ..
T Consensus 152 ~rGH-tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCG-gG 226 (325)
T KOG0649|consen 152 YRGH-TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCG-GG 226 (325)
T ss_pred EcCC-cceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEec-CC
Confidence 9988 899999987 5555999999999999999999988776542 2123466676554 666655 45
Q ss_pred CeEEEEECcCCceeEEE--EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 306 YEVFCGQWRESSKVFAF--RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~--~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
..+.+|.++..++..+| ++|. ..+.. +.+.++++++.+.|+-|.+.
T Consensus 227 p~lslwhLrsse~t~vfpipa~v--~~v~F--~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFPIPARV--HLVDF--VDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CceeEEeccCCCceEEEecccce--eEeee--ecceEEEeccccceeeeeec
Confidence 67899999987766665 4554 32222 56778888888889888763
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-14 Score=130.86 Aligned_cols=225 Identities=16% Similarity=0.143 Sum_probs=163.9
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEE
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
+.+.|+.++ ..+.-+...|++-.+|..+..- .+.+.- . +-+..+.|-. +++++|++ -.+-+.
T Consensus 133 Y~~~ytrnG----rhlllgGrKGHlAa~Dw~t~~L-----~~Ei~v-----~-Etv~Dv~~LH-neq~~AVA--QK~y~y 194 (545)
T KOG1272|consen 133 YHLDYTRNG----RHLLLGGRKGHLAAFDWVTKKL-----HFEINV-----M-ETVRDVTFLH-NEQFFAVA--QKKYVY 194 (545)
T ss_pred eeeeecCCc----cEEEecCCccceeeeeccccee-----eeeeeh-----h-hhhhhhhhhc-chHHHHhh--hhceEE
Confidence 567777663 5666677889998888765421 111110 0 1133577766 66788987 457799
Q ss_pred EEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-
Q 017601 176 VYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG- 253 (369)
Q Consensus 176 lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g- 253 (369)
|||.. ..+..++.......+.|++++ -.|+++++.|.++--|+.+| +.+..+... .+.+..++-+|-+
T Consensus 195 vYD~~GtElHClk~~~~v~rLeFLPyH------fLL~~~~~~G~L~Y~DVS~G---klVa~~~t~-~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 195 VYDNNGTELHCLKRHIRVARLEFLPYH------FLLVAASEAGFLKYQDVSTG---KLVASIRTG-AGRTDVMKQNPYNA 264 (545)
T ss_pred EecCCCcEEeehhhcCchhhhcccchh------heeeecccCCceEEEeechh---hhhHHHHcc-CCccchhhcCCccc
Confidence 99864 555555555455666777642 24556778899999999999 777776644 4788889999999
Q ss_pred cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc-CCCeeeee
Q 017601 254 NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG-DSNWLGFS 332 (369)
Q Consensus 254 ~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g-~~~~~~~~ 332 (369)
.+-+|...|+|.+|.....+++..+..| .++|.+|++.+ +|+++++.|.|+.++|||++.-..+.++.. |. .+-.
T Consensus 265 Vih~GhsnGtVSlWSP~skePLvKiLcH-~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~--a~~l 340 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKEPLVKILCH-RGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP--ASNL 340 (545)
T ss_pred eEEEcCCCceEEecCCCCcchHHHHHhc-CCCcceEEECC-CCcEEeecccccceeEeeeccccccceeecCCC--cccc
Confidence 9999999999999999999999999999 99999999999 999999999999999999998766666544 22 1111
Q ss_pred EcCCCCEEEEEeCCCcEEEEE
Q 017601 333 KCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 333 ~~~d~~~l~sgs~dg~I~iWd 353 (369)
.. ..+-++..|....|.||.
T Consensus 341 s~-SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 341 SL-SQKGLLALSYGDHVQIWK 360 (545)
T ss_pred cc-ccccceeeecCCeeeeeh
Confidence 12 234455566677899994
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.3e-13 Score=130.56 Aligned_cols=254 Identities=13% Similarity=0.079 Sum_probs=160.2
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC-C--CCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG-K--DVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
..|..+.+-.+ .+..++.+++.+|.|++|+-.... + ++...-..+..+..+..+.| .-++|.... +.+.++ +
T Consensus 1110 t~Vs~l~liNe--~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~-G~Ll~t-G 1184 (1387)
T KOG1517|consen 1110 TRVSDLELINE--QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQS-GHLLVT-G 1184 (1387)
T ss_pred Cccceeeeecc--cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC-eeeehhhhC-CeEEec-C
Confidence 55667776443 235678888999999999865332 1 11111111222222222333 235676644 455555 5
Q ss_pred ccceEEEEeCCcceE--EEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc--EE
Q 017601 170 FSKSIDVYDQDIHLR--TLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI--LY 245 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~--v~ 245 (369)
.-+.|+|||..+... .+... ....++.+.. .-..++.++++-.||.|++||.|.......+.....| ... |.
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~-s~t~vTaLS~--~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h-~~~~~Iv 1260 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYG-SSTLVTALSA--DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREH-NDVEPIV 1260 (1387)
T ss_pred CeeEEEEEecccceeEeecccC-CCccceeecc--cccCCceEEEeecCCceEEeecccCCccccceeeccc-CCcccce
Confidence 689999999875432 22211 2222333221 1123567888889999999999987654555555544 333 99
Q ss_pred EEEECCCC--cEEEEeCCCcEEEEeCCCceeee--ecccccc-C-ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCcee
Q 017601 246 AVCSSSTG--NIAVAGADRTVTIYDPRRWSALS--RWVHCSK-Y-EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKV 319 (369)
Q Consensus 246 ~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~--~~~~h~~-~-~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~ 319 (369)
-+.+.+.| .|++|+.||.|++||+|...... +...|-. + ..+++..++ +...+|+|+. +.|+||++.. +.+
T Consensus 1261 ~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G-~~l 1337 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSG-EQL 1337 (1387)
T ss_pred eEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-CCCeeeecCc-ceEEEEecCh-hhh
Confidence 99999999 79999999999999999843222 3334411 2 489999999 8899999998 9999999865 233
Q ss_pred EEEEcCCCe--------eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 320 FAFRGDSNW--------LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 320 ~~~~g~~~~--------~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
..++-+..+ .++..-|-.-++|.|+.|.+|.||....++
T Consensus 1338 ~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 333222211 112222345578999999999999876543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-12 Score=119.89 Aligned_cols=198 Identities=20% Similarity=0.269 Sum_probs=145.9
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeC-C-cceeeeccCCCCCCCC-cEEEEEc-CCeEEEEeCCc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWY-P-SSLNFVQNLSPVNGGP-NMLAVTE-GCQLTIWDLRM 226 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~-~lla~s~-d~~v~iwD~~~ 226 (369)
+.++.|.+.+ ..++.+ +.|+.+.+|+.......+..... . ..+...... .+++. .++..+. |+.+.+||...
T Consensus 68 i~~~~~~~~~-~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 68 ITSIAFSPDG-ELLLSG-SSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS--SPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred EEEEEECCCC-cEEEEe-cCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE--CCCcceEEeccCCCCccEEEEEecC
Confidence 5578888854 455555 68999999997644322222211 1 122222211 13344 3444455 89999999987
Q ss_pred -ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCC-EEEEE
Q 017601 227 -KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSN-YIYVQ 302 (369)
Q Consensus 227 -~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~-~l~s~ 302 (369)
. .....+..+ ...|++++|+|++ .+++++. |+.+++|+++.+..+..+.+| ...|.+++|+| ++. .++++
T Consensus 144 ~~---~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~~~~~~ 217 (466)
T COG2319 144 PG---KLIRTLEGH-SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSP-DGGLLIASG 217 (466)
T ss_pred CC---eEEEEEecC-cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcC-CcceEEEEe
Confidence 4 455556655 5889999999999 8888885 999999999998899999999 99999999999 887 66666
Q ss_pred ECCCeEEEEECcCCceeE-EEEcCCCeeee-eEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 303 GVDYEVFCGQWRESSKVF-AFRGDSNWLGF-SKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~-~~~g~~~~~~~-~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.|+.|++||...+.... .+.+|.... + ...+++.++++++.|+.+++|+......
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 999999999999877777 688887432 3 3455778899999999999999986653
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-11 Score=109.45 Aligned_cols=184 Identities=19% Similarity=0.172 Sum_probs=124.4
Q ss_pred ceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCC--cceEE
Q 017601 108 YMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRT 185 (369)
Q Consensus 108 ~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~ 185 (369)
...+++.+.-..+.+.+...+ ..+-. +... ..+.+|.++. ++++++ -...|.|||+. +.+.+
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~-~~ICe--~~fp--------t~IL~VrmNr---~RLvV~--Lee~IyIydI~~MklLhT 121 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKK-TTICE--IFFP--------TSILAVRMNR---KRLVVC--LEESIYIYDIKDMKLLHT 121 (391)
T ss_pred eeEEEecCCCceEEEEEcccC-ceEEE--EecC--------CceEEEEEcc---ceEEEE--EcccEEEEecccceeehh
Confidence 344555544445777766643 11211 1111 1244677765 456666 34459999986 33344
Q ss_pred EEee-eCCcceeeeccCCCCCCCCcEEE-EE-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC
Q 017601 186 LRTL-WYPSSLNFVQNLSPVNGGPNMLA-VT-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD 261 (369)
Q Consensus 186 ~~~~-~~~~~v~~~~~~~~~~~~~~lla-~s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D 261 (369)
+.+. .++..+..+. .++++.+++. ++ ..|.|.|||+-+- +++..+..| .+++-|++|+++| +||++|+.
T Consensus 122 I~t~~~n~~gl~AlS---~n~~n~ylAyp~s~t~GdV~l~d~~nl---~~v~~I~aH-~~~lAalafs~~G~llATASeK 194 (391)
T KOG2110|consen 122 IETTPPNPKGLCALS---PNNANCYLAYPGSTTSGDVVLFDTINL---QPVNTINAH-KGPLAALAFSPDGTLLATASEK 194 (391)
T ss_pred hhccCCCccceEeec---cCCCCceEEecCCCCCceEEEEEcccc---eeeeEEEec-CCceeEEEECCCCCEEEEeccC
Confidence 4332 2333332222 1122334443 22 4689999999877 788888766 7999999999999 99999999
Q ss_pred CcE-EEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 262 RTV-TIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 262 ~~v-~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
|+| ||+.+.+|+.+.+|. |-..-.|.+++|+| ++++|++.|.-++|.+|.+..
T Consensus 195 GTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 195 GTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEecc
Confidence 986 899999999999987 33234689999999 999999999999999998864
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-13 Score=123.33 Aligned_cols=184 Identities=17% Similarity=0.189 Sum_probs=128.8
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeC-Ccc
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDL-RMK 227 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~-~~~ 227 (369)
..++++.|-|.++..++++ -.++.+.+||..... ...++ .+... +++..+. |..|-- ++.
T Consensus 220 tsvT~ikWvpg~~~~Fl~a-~~sGnlyly~~~~~~----~~t~p---~~~~~----k~~~~f~-------i~t~ksk~~r 280 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVA-HASGNLYLYDKEIVC----GATAP---SYQAL----KDGDQFA-------ILTSKSKKTR 280 (636)
T ss_pred cceEEEEEEeCCCceEEEE-EecCceEEeeccccc----cCCCC---ccccc----CCCCeeE-------EeeeeccccC
Confidence 3466788888777777776 777888887752110 00011 11110 1122221 111111 111
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCC
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY 306 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~ 306 (369)
.++..+.-. .+.|+.++|+||| +||+-|.||.+||||..+.+++..++.- -+...+|+||| ||+++++|+.|.
T Consensus 281 ---NPv~~w~~~-~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-FGGLLCvcWSP-DGKyIvtGGEDD 354 (636)
T KOG2394|consen 281 ---NPVARWHIG-EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-FGGLLCVCWSP-DGKYIVTGGEDD 354 (636)
T ss_pred ---CccceeEec-cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh-ccceEEEEEcC-CccEEEecCCcc
Confidence 345554432 4789999999999 9999999999999999998887777765 67789999999 999999999999
Q ss_pred eEEEEECcCCceeEEEEcCCCeeeeeE-c-----------------------------------CCC-------------
Q 017601 307 EVFCGQWRESSKVFAFRGDSNWLGFSK-C-----------------------------------SNR------------- 337 (369)
Q Consensus 307 ~i~vwd~~~~~~~~~~~g~~~~~~~~~-~-----------------------------------~d~------------- 337 (369)
-|.||.+...+.+..-.||..|..... - .++
T Consensus 355 LVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~ 434 (636)
T KOG2394|consen 355 LVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVT 434 (636)
T ss_pred eEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceE
Confidence 999999999988888888988865433 1 011
Q ss_pred CEEEEEeCCCcEEEEECCCC
Q 017601 338 DVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 338 ~~l~sgs~dg~I~iWd~~~~ 357 (369)
-.|.|.+.|-.+.+||+...
T Consensus 435 YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 435 YRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred EEeecccccceEEEEecchh
Confidence 25889999999999999654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.6e-13 Score=123.39 Aligned_cols=219 Identities=17% Similarity=0.118 Sum_probs=141.7
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
++.+|+|-|++++|+.+ +.+|+|++++-++.|||.-.. +.+. ... .+|. ..+.++.|-|.....+++
T Consensus 45 eL~GH~GCVN~LeWn~d----G~lL~SGSDD~r~ivWd~~~~-Kllh--sI~-TgHt-----aNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNAD----GELLASGSDDTRLIVWDPFEY-KLLH--SIS-TGHT-----ANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred hhccccceecceeecCC----CCEEeecCCcceEEeecchhc-ceee--eee-cccc-----cceeEEeeeccCCCeEEE
Confidence 47899999999999988 479999999999999998733 1110 010 1121 235579999976555555
Q ss_pred EecccceEEEEeCCc---------ceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc----e
Q 017601 167 ARSFSKSIDVYDQDI---------HLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG----C 232 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~---------~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~----~ 232 (369)
+++.|+.|+|||++. ...+.+... |...+.-+...+.+| ..+.++++||+++-||+|....-. +
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--htfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--HTFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC--ceEEEecCCcceeeecccCCccCCccccc
Confidence 559999999999863 111222211 223333444334333 589999999999999999642111 1
Q ss_pred eee---eeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC--------ce----------eeeec-ccccc-----
Q 017601 233 LHR---ICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR--------WS----------ALSRW-VHCSK----- 283 (369)
Q Consensus 233 ~~~---~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~--------~~----------~~~~~-~~h~~----- 283 (369)
... +... --...|+..+|.. +||+|+.|-.+++||.|. +. ++..+ .+|++
T Consensus 190 ~~~l~ny~~~-lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn 268 (758)
T KOG1310|consen 190 PSILVNYNPQ-LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGN 268 (758)
T ss_pred cHHHHHhchh-hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccc
Confidence 111 1111 2357889999998 999999999999999553 11 12222 23421
Q ss_pred -----CceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 284 -----YEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 284 -----~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
-.++-+.|+| +|.-|+..-..-.|+++|+..++....+
T Consensus 269 ~~~~~~~~t~vtfnp-NGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 269 LDRYITCCTYVTFNP-NGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cccceeeeEEEEECC-CCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 1267789999 8776665444457999999876544333
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-13 Score=122.40 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=117.9
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCc---e---eeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCC--------C-
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGG---C---LHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPR--------R- 271 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~---~---~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~--------~- 271 (369)
+.+++++.|..|+||-+..++..+ . +..+..| ...|+++.|+|+| +||+|+++|.|.+|-.. +
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H-~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e 105 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRH-TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTE 105 (434)
T ss_pred cceecccCccceeeeeeeecCCCCCceeEEEeecccCC-cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccch
Confidence 488889999999999987665433 2 2334555 6899999999999 99999999999999654 2
Q ss_pred -------ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCee-eeeEcCCCCEEEEE
Q 017601 272 -------WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLGGW 343 (369)
Q Consensus 272 -------~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~sg 343 (369)
+.....+.+| ...|..++|+| ++.++++++.|+.+++||+..+.....+.+|..+. ++..-|-+.++++-
T Consensus 106 ~~~~ke~w~v~k~lr~h-~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRGH-RDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASK 183 (434)
T ss_pred hhhCccceEEEEEeccc-ccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhh
Confidence 4455677889 99999999999 99999999999999999999999999998887442 33334567788888
Q ss_pred eCCCcEEEEECCC
Q 017601 344 SDSGSIFVADVVA 356 (369)
Q Consensus 344 s~dg~I~iWd~~~ 356 (369)
|.|...++..+..
T Consensus 184 s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 184 SSDRHPEGFSAKL 196 (434)
T ss_pred ccCcccceeeeee
Confidence 8888776666544
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-11 Score=111.66 Aligned_cols=230 Identities=11% Similarity=0.057 Sum_probs=135.6
Q ss_pred EEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeee
Q 017601 113 SVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLW 190 (369)
Q Consensus 113 s~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~ 190 (369)
+...++.|.+|++... ..+.. ...+. .. ++...++++|++..+++++ ..++.|.+|+.+. .+.......
T Consensus 7 ~~~~~~~I~~~~~~~~-g~l~~-~~~~~-~~-----~~~~~l~~spd~~~lyv~~-~~~~~i~~~~~~~~g~l~~~~~~~ 77 (330)
T PRK11028 7 ASPESQQIHVWNLNHE-GALTL-LQVVD-VP-----GQVQPMVISPDKRHLYVGV-RPEFRVLSYRIADDGALTFAAESP 77 (330)
T ss_pred EcCCCCCEEEEEECCC-Cceee-eeEEe-cC-----CCCccEEECCCCCEEEEEE-CCCCcEEEEEECCCCceEEeeeec
Confidence 3355688999999632 11111 01111 00 1223689999655444444 6688999998752 122222111
Q ss_pred CCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCccc-CCceeeeeeccCCCcEEEEEECCCC-cE-EEEeCCCcEEE
Q 017601 191 YPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKE-NGGCLHRICGSVGDILYAVCSSSTG-NI-AVAGADRTVTI 266 (369)
Q Consensus 191 ~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g-~l-asgs~D~~v~v 266 (369)
.......+. +++++..+++++. ++.|.+||+.+.. ....+..+.+. ....+++|+|+| ++ ++...++.|.+
T Consensus 78 ~~~~p~~i~---~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~~p~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 78 LPGSPTHIS---TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL--EGCHSANIDPDNRTLWVPCLKEDRIRL 152 (330)
T ss_pred CCCCceEEE---ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC--CcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence 111122222 3355666776654 8899999997431 11223333333 456788999999 55 55667799999
Q ss_pred EeCCCceeeee-----ccccccCceEEEEEcCCCCCEEEEEEC-CCeEEEEECcC--C--ceeEEEEcC------CCe-e
Q 017601 267 YDPRRWSALSR-----WVHCSKYEITGLSFSSIDSNYIYVQGV-DYEVFCGQWRE--S--SKVFAFRGD------SNW-L 329 (369)
Q Consensus 267 wD~~~~~~~~~-----~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~~~--~--~~~~~~~g~------~~~-~ 329 (369)
||+.+...+.. ...........+.|+| ++++++++.. +++|.+||++. + +.+..+... .+| .
T Consensus 153 ~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (330)
T PRK11028 153 FTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA 231 (330)
T ss_pred EEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence 99987332211 1111023467899999 9999988776 89999999974 2 223333221 111 1
Q ss_pred eeeEcCCCCEEEEEeC-CCcEEEEECCCC
Q 017601 330 GFSKCSNRDVLGGWSD-SGSIFVADVVAK 357 (369)
Q Consensus 330 ~~~~~~d~~~l~sgs~-dg~I~iWd~~~~ 357 (369)
.+...+++++|+++.. ++.|.+|++.+.
T Consensus 232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 232 DIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred eEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 2445679999888864 789999998653
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-13 Score=133.57 Aligned_cols=245 Identities=14% Similarity=0.102 Sum_probs=165.7
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|...|+|+.|... +..+.+++++..+.||...+.. ....+.+|.. .++.++.+. +..++|++
T Consensus 186 LlgH~naVyca~fDrt----g~~Iitgsdd~lvKiwS~et~~-----~lAs~rGhs~-----ditdlavs~-~n~~iaaa 250 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRT----GRYIITGSDDRLVKIWSMETAR-----CLASCRGHSG-----DITDLAVSS-NNTMIAAA 250 (1113)
T ss_pred HHhhhhheeeeeeccc----cceEeecCccceeeeeeccchh-----hhccCCCCcc-----ccchhccch-hhhhhhhc
Confidence 5699999999999876 4788889999999999966541 1223344432 345677776 55677777
Q ss_pred ecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce-----------ee
Q 017601 168 RSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC-----------LH 234 (369)
Q Consensus 168 ~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~-----------~~ 234 (369)
|+|+.|++|-.. ..+..+ ..|...++.+++.|+ .+.++||++++||.+-...... +-
T Consensus 251 -S~D~vIrvWrl~~~~pvsvL--rghtgavtaiafsP~-------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 251 -SNDKVIRVWRLPDGAPVSVL--RGHTGAVTAIAFSPR-------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred -ccCceEEEEecCCCchHHHH--hccccceeeeccCcc-------ccCCCCCceEeccccccccccCCCCCCccccccee
Confidence 999999999864 233333 235556666664332 2668899999999981100000 00
Q ss_pred eee----------ccC-----CCcEEEEEECCCC-cEEEEe-----------CCCcEEEEeCCCceeeeeccccccCceE
Q 017601 235 RIC----------GSV-----GDILYAVCSSSTG-NIAVAG-----------ADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 235 ~~~----------~~~-----~~~v~~v~~sp~g-~lasgs-----------~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
.+. +.. ...+-+++|.... .+++.+ .+-.+++|++-++..++.+.+| .+++.
T Consensus 321 s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh-sd~~y 399 (1113)
T KOG0644|consen 321 SILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH-SDEVY 399 (1113)
T ss_pred eeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc-cccee
Confidence 000 000 0122233444444 344443 4555788999999999999999 99999
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE-EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF-RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~-~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
-+.++|.+.....+++.||...|||+-.+-.++.+ .||.....-..+.||..++....-|.++|.....++
T Consensus 400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred eeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 99999999999999999999999999988777666 466522222225588888888788999998765554
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-11 Score=108.97 Aligned_cols=235 Identities=16% Similarity=0.219 Sum_probs=155.6
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc-
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS- 171 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d- 171 (369)
..|+.+.|..+ ...|..++.+| ..++......+ .+ +... ....+.-.-|+. .++|.. +.+
T Consensus 6 ~ti~~~~~Nqd----~~~lsvGs~~G-yk~~~~~~~~k-----~~----~~~~-~~~~IvEmLFSS---SLvaiV-~~~q 66 (391)
T KOG2110|consen 6 PTINFIGFNQD----STLLSVGSKDG-YKIFSCSPFEK-----CF----SKDT-EGVSIVEMLFSS---SLVAIV-SIKQ 66 (391)
T ss_pred cceeeeeeccc----eeEEEccCCCc-eeEEecCchHH-----hh----cccC-CCeEEEEeeccc---ceeEEE-ecCC
Confidence 44566667665 35666677766 34454442210 01 1000 001122233544 345544 233
Q ss_pred -ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc--CCCcEEEEE
Q 017601 172 -KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS--VGDILYAVC 248 (369)
Q Consensus 172 -~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~--~~~~v~~v~ 248 (369)
+.+++++..+..... ....+..+-.+.. .-++|+.+-++. |.|||+++. +.++++..- +...+.+++
T Consensus 67 pr~Lkv~~~Kk~~~IC-e~~fpt~IL~Vrm-----Nr~RLvV~Lee~-IyIydI~~M---klLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTIC-EIFFPTSILAVRM-----NRKRLVVCLEES-IYIYDIKDM---KLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred CceEEEEEcccCceEE-EEecCCceEEEEE-----ccceEEEEEccc-EEEEecccc---eeehhhhccCCCccceEeec
Confidence 347777765433222 2223444333332 135787777665 999999988 788776532 134566677
Q ss_pred ECCCC-cEEEEe--CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe-EEEEECcCCceeEEEEc
Q 017601 249 SSSTG-NIAVAG--ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE-VFCGQWRESSKVFAFRG 324 (369)
Q Consensus 249 ~sp~g-~lasgs--~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~-i~vwd~~~~~~~~~~~g 324 (369)
+++.+ ++|--+ ..|.|.|||+.+-+++.++..| ++++-+++|+| +|.+||++|..|+ |||+.+.++..++.|+-
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRR 214 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-KGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRR 214 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-CCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeC
Confidence 77777 777643 3688999999999999999999 99999999999 9999999999996 79999999999999964
Q ss_pred CCCee---eeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 325 DSNWL---GFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 325 ~~~~~---~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
-.... .+...+|+.+|++.|..++|.|+.++...
T Consensus 215 G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 215 GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 43222 33346699999999999999999987643
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.1e-13 Score=123.20 Aligned_cols=253 Identities=12% Similarity=0.075 Sum_probs=164.0
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCC---CCccccccccCCCCCCCCCCeeEEEECCCCce
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGK---DVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 162 (369)
+++..|.+.|+.++|.+-+ -.+++++.+|.+.+|++++... ..-...+.+..| ++.+.++++.+ +..
T Consensus 288 ~tl~s~~d~ir~l~~~~se----p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-----~gPVl~v~v~~-n~~ 357 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSE----PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-----EGPVLCVVVPS-NGE 357 (577)
T ss_pred eeeecchhhhhhhhcCCCC----CeEEEeccccchhhhhhcccCCccccceeeeEEEecc-----cCceEEEEecC-Cce
Confidence 3567899999999998864 5888999999999999954211 111122444444 34566899988 455
Q ss_pred eEEEEecccceEEEEeCCcce--------EEE--EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 163 MAAVARSFSKSIDVYDQDIHL--------RTL--RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~~~--------~~~--~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
.+.++ +.|++|+.|++.... ..+ ....|..++.-+.++. ...+|++++.||++++|+..... .+
T Consensus 358 ~~ysg-g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~---~~~~Llscs~DgTvr~w~~~~~~--~~ 431 (577)
T KOG0642|consen 358 HCYSG-GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS---TKDRLLSCSSDGTVRLWEPTEES--PC 431 (577)
T ss_pred EEEee-ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc---cccceeeecCCceEEeeccCCcC--cc
Confidence 67777 899999999653111 111 1122334443333322 24589999999999999987652 12
Q ss_pred eee-eeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeecccc------ccCceEEEEEcCCCCCEEEEEE
Q 017601 233 LHR-ICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHC------SKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 233 ~~~-~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h------~~~~v~~l~~sp~d~~~l~s~s 303 (369)
... ...+ +.-.+++|-... ..++...-+.-.++|+...+.+..+..- ....+.-+.++| ...+.+++.
T Consensus 432 ~f~~~~e~--g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~h 508 (577)
T KOG0642|consen 432 TFGEPKEH--GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAH 508 (577)
T ss_pred ccCCcccc--CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecc
Confidence 211 1222 444566664333 2222222222334444444444333311 024577888999 889999999
Q ss_pred CCCeEEEEECcCCceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 304 VDYEVFCGQWRESSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 304 ~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.|+.|+++|..+++.++....|. ..+.. .++|-+|++|+.||.+++|.+..+..
T Consensus 509 ed~~Ir~~dn~~~~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGKILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred cCCceecccccccccchheeecc--ceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 99999999999999999998887 44444 45899999999999999999866543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=117.97 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=123.2
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCC-----c---ceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEE
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQD-----I---HLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTI 221 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-----~---~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~i 221 (369)
|..+.|.+...+.+|++ +.|..|+||-+. . .+.-+..+ .|...++.+. |++++..|++++++|.+.|
T Consensus 16 v~s~dfq~n~~~~laT~-G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vR---f~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATA-GGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVR---FSPDGELLASGGDGGEVFL 91 (434)
T ss_pred eEEEEeccCcccceecc-cCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEE---EcCCcCeeeecCCCceEEE
Confidence 66799998766689998 899999999642 1 22222222 3556666666 4566778888999999999
Q ss_pred EeCC--------c-----ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceE
Q 017601 222 WDLR--------M-----KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 222 wD~~--------~-----~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
|-.. + .+.....+.+.+| ...|+.++|+|++ .+++|+.|.++++||++.|+.+..+..| ...|.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h-~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~~yvq 169 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGH-RDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-EHYVQ 169 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEeccc-ccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-ccccc
Confidence 9765 2 1111223344455 6899999999999 9999999999999999999999999999 99999
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
.++|.| -.+++++-|.|...+.+.+..
T Consensus 170 gvawDp-l~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 170 GVAWDP-LNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred eeecch-hhhhhhhhccCcccceeeeee
Confidence 999999 889999999999777776654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-12 Score=121.10 Aligned_cols=268 Identities=16% Similarity=0.238 Sum_probs=177.8
Q ss_pred EecCCCceEEEEEEeCCeEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEE
Q 017601 35 HVNEDGCSCFVYIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSV 114 (369)
Q Consensus 35 ~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~ 114 (369)
.+-++|.+ +++|.|++++..++. + + ...-.+.+|++.|++++|+.|+ .+.||+
T Consensus 19 afkPDGsq--L~lAAg~rlliyD~n----------d----------G-~llqtLKgHKDtVycVAys~dG----krFASG 71 (1081)
T KOG1538|consen 19 AFKPDGTQ--LILAAGSRLLVYDTS----------D----------G-TLLQPLKGHKDTVYCVAYAKDG----KRFASG 71 (1081)
T ss_pred EECCCCce--EEEecCCEEEEEeCC----------C----------c-ccccccccccceEEEEEEccCC----ceeccC
Confidence 34566644 578888888766621 1 1 0122367999999999999984 899999
Q ss_pred ecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCC-cceEEEEeeeCCc
Q 017601 115 DSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPS 193 (369)
Q Consensus 115 d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~~~ 193 (369)
+.+..|.+|+-.-.+ ..+|. |... +-+..|+|-. ..+++| +. ...-+|..+ +.+...+ ...
T Consensus 72 ~aDK~VI~W~~klEG----~LkYS---H~D~-----IQCMsFNP~~-h~LasC-sL-sdFglWS~~qK~V~K~k---ss~ 133 (1081)
T KOG1538|consen 72 SADKSVIIWTSKLEG----ILKYS---HNDA-----IQCMSFNPIT-HQLASC-SL-SDFGLWSPEQKSVSKHK---SSS 133 (1081)
T ss_pred CCceeEEEecccccc----eeeec---cCCe-----eeEeecCchH-HHhhhc-ch-hhccccChhhhhHHhhh---hhe
Confidence 999999999865331 12333 2222 4489999954 467777 32 346678654 2222211 122
Q ss_pred ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC------cEEEEeCCCcEEEE
Q 017601 194 SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG------NIAVAGADRTVTIY 267 (369)
Q Consensus 194 ~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g------~lasgs~D~~v~vw 267 (369)
.+..+.| .+||+.++-+-.+|+|.|-+-. ++....+.+.-+. ..+|++++|+|.. .+++..+..|+..|
T Consensus 134 R~~~CsW---tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~-Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 134 RIICCSW---TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGS-NSPIWSICWNPSSGEGRNDILAVADWGQTLSFY 208 (1081)
T ss_pred eEEEeee---cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCC-CCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence 2333333 2466666667789999998643 3211223332233 6899999999974 78889999999988
Q ss_pred eCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCee-eeeEcCCCCEEEEEeCC
Q 017601 268 DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLGGWSDS 346 (369)
Q Consensus 268 D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~sgs~d 346 (369)
.+. |+.+..-..- ...-.++.+.| +|.+++.||.|+.+.++. +.|-.+-+......|. .+..-|++..++.|+.|
T Consensus 209 ~Ls-G~~Igk~r~L-~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 209 QLS-GKQIGKDRAL-NFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred Eec-ceeecccccC-CCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEcc
Confidence 864 5555433333 45567889999 999999999999999985 4455555553333343 44556799999999999
Q ss_pred CcEEEEECCC
Q 017601 347 GSIFVADVVA 356 (369)
Q Consensus 347 g~I~iWd~~~ 356 (369)
|+|--|++..
T Consensus 285 GTiACyNl~f 294 (1081)
T KOG1538|consen 285 GTIACYNLIF 294 (1081)
T ss_pred CeeehhhhHH
Confidence 9999888653
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=115.94 Aligned_cols=257 Identities=14% Similarity=0.107 Sum_probs=157.8
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc------cccc----------cCCCC---
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL------TYSV----------LPQDC--- 144 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~------~~~~----------~~~~~--- 144 (369)
..++-..|...-+.|..+||+ ..++|++--.-.|.+||+..-.-....+ .+.+ ...+.
T Consensus 43 eLiQdfe~p~ast~ik~s~DG---qY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDG---QYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred HHHHhcCCccccceeEecCCC---cEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence 344456888999999999995 5788999888899999986532111000 0000 00000
Q ss_pred CCCCCC-e---------eEEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEE
Q 017601 145 GVGEGS-W---------SGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLA 212 (369)
Q Consensus 145 ~~~~~~-~---------~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla 212 (369)
-+...| + ..++++.-.-.++.++ + ...|.-+++. ..+.++.+.. ..++.+. .++..+.|++
T Consensus 120 fHak~G~hy~~RIP~~GRDm~y~~~scDly~~g-s-g~evYRlNLEqGrfL~P~~~~~--~~lN~v~---in~~hgLla~ 192 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVG-S-GSEVYRLNLEQGRFLNPFETDS--GELNVVS---INEEHGLLAC 192 (703)
T ss_pred ehhhcCeeeeeecCcCCccccccCCCccEEEee-c-CcceEEEEcccccccccccccc--ccceeee---ecCccceEEe
Confidence 000011 0 1244443333344444 2 2234444443 3444443322 2333333 2233445555
Q ss_pred EEcCCeEEEEeCCcccCCceeeeeeccC----------CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-c
Q 017601 213 VTEGCQLTIWDLRMKENGGCLHRICGSV----------GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-H 280 (369)
Q Consensus 213 ~s~d~~v~iwD~~~~~~~~~~~~~~~~~----------~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-~ 280 (369)
++.+|.|..||.|+.. .+.++.... ...|+++.|+.+| .+++|..+|.|.|||+|+.+++..-. +
T Consensus 193 Gt~~g~VEfwDpR~ks---rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKS---RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred cccCceEEEecchhhh---hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 6679999999999883 343333210 1349999999999 99999999999999999988876533 2
Q ss_pred cccCceEEEEEcCCCCC-EEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 281 CSKYEITGLSFSSIDSN-YIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 281 h~~~~v~~l~~sp~d~~-~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
. .-+|..+.|.+.+++ .++| .....++|||-.+++....+........+...+++.+++++-++..+..|=+.
T Consensus 270 ~-e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 270 Y-ELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred C-ccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 3 567999999884333 3333 23457899999999988887655433444445688899999998877665443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-12 Score=113.86 Aligned_cols=196 Identities=21% Similarity=0.217 Sum_probs=132.5
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEE
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
..++|+.++ ..++++..+|.+++|+...... + .+. ..| +..+..+.|+|+ ...+++- +.| ..+
T Consensus 148 k~vaf~~~g----s~latgg~dg~lRv~~~Ps~~t-~---l~e-~~~-----~~eV~DL~FS~d-gk~lasi-g~d-~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGDG----SKLATGGTDGTLRVWEWPSMLT-I---LEE-IAH-----HAEVKDLDFSPD-GKFLASI-GAD-SAR 210 (398)
T ss_pred eEEEEcCCC----CEeeeccccceEEEEecCcchh-h---hhh-Hhh-----cCccccceeCCC-CcEEEEe-cCC-ceE
Confidence 678998874 6999999999999999653211 0 111 111 123558999994 5566766 667 899
Q ss_pred EEeCCcc--eEEEEeeeCC---cceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCcee---eeeeccCCCcEE
Q 017601 176 VYDQDIH--LRTLRTLWYP---SSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGCL---HRICGSVGDILY 245 (369)
Q Consensus 176 lwd~~~~--~~~~~~~~~~---~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~~---~~~~~~~~~~v~ 245 (369)
||+.... +......... ..+.|..... ....++++. ..+.|+.||+........+ +.+... ..|+
T Consensus 211 VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~---~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~--~siS 285 (398)
T KOG0771|consen 211 VWSVNTGAALARKTPFSKDEMFSSCRFSVDNA---QETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF--KSIS 285 (398)
T ss_pred EEEeccCchhhhcCCcccchhhhhceecccCC---CceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc--Ccce
Confidence 9997532 2222111111 2344443211 113444433 3467888877654321111 122233 6899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
+++.+++| ++|.|+.||.|.|++..+.+.++-.+ .| ..-|+.|.|+| |.+++++.|.|.++.+.-+.-
T Consensus 286 sl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH-~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 286 SLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAH-LGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhh-eeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 99999999 99999999999999999988877555 67 88999999999 999999999999999987754
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-11 Score=116.07 Aligned_cols=209 Identities=13% Similarity=0.001 Sum_probs=127.9
Q ss_pred CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc--cceEEEEeCCcc-eEEEEeeeC-C
Q 017601 117 YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF--SKSIDVYDQDIH-LRTLRTLWY-P 192 (369)
Q Consensus 117 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~--d~~i~lwd~~~~-~~~~~~~~~-~ 192 (369)
+.+|++||.+.... ..+..+. ..+...+|+|++. .++.++.. +.+|.+||.... .+.+..... .
T Consensus 183 ~~~i~i~d~dg~~~------~~lt~~~-----~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~ 250 (429)
T PRK01742 183 PYEVRVADYDGFNQ------FIVNRSS-----QPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN 250 (429)
T ss_pred eEEEEEECCCCCCc------eEeccCC-----CccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc
Confidence 36899999874421 1111111 1244799999654 55555222 247999997532 222322211 1
Q ss_pred cceeeeccCCCCCCCCcEEEEE-cCCeEEEE--eCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe-CCCcEEEE
Q 017601 193 SSLNFVQNLSPVNGGPNMLAVT-EGCQLTIW--DLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG-ADRTVTIY 267 (369)
Q Consensus 193 ~~v~~~~~~~~~~~~~~lla~s-~d~~v~iw--D~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs-~D~~v~vw 267 (369)
..+ .++||+..|+.++ .++.+.|| |+.++ . +..+..+ ...+.+.+|+||| .|+..+ .++...||
T Consensus 251 ~~~------~wSPDG~~La~~~~~~g~~~Iy~~d~~~~---~-~~~lt~~-~~~~~~~~wSpDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 251 GAP------AFSPDGSRLAFASSKDGVLNIYVMGANGG---T-PSQLTSG-AGNNTEPSWSPDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred Cce------eECCCCCEEEEEEecCCcEEEEEEECCCC---C-eEeeccC-CCCcCCEEECCCCCEEEEEECCCCCceEE
Confidence 122 2446777777765 57766665 65554 3 3444443 3567889999999 665544 67888999
Q ss_pred eCCCc-eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCC
Q 017601 268 DPRRW-SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDS 346 (369)
Q Consensus 268 D~~~~-~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~d 346 (369)
++... .....+ ++ .. ....|+| ||+.|+..+.++ +.+||+.+++.......... .....++||++|+.++.+
T Consensus 320 ~~~~~~~~~~~l-~~-~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~-~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 320 RMSASGGGASLV-GG-RG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLD-ESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred EEECCCCCeEEe-cC-CC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecCCCCC-CCceECCCCCEEEEEEcC
Confidence 87542 222222 44 33 4678999 999998888765 55599988765433322221 233457799999999999
Q ss_pred CcEEEEECC
Q 017601 347 GSIFVADVV 355 (369)
Q Consensus 347 g~I~iWd~~ 355 (369)
+.+.+|++.
T Consensus 393 g~~~~l~~~ 401 (429)
T PRK01742 393 GLGKVLQLV 401 (429)
T ss_pred CCceEEEEE
Confidence 999888763
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-11 Score=116.01 Aligned_cols=216 Identities=15% Similarity=0.116 Sum_probs=153.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCC--CCCCCCCeeEEEECCCCceeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQD--CGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~p~~~~~~a 165 (369)
...|...|..+.|-.+.. ..-+.|++.||.|..|+++.-....+........+. ......+.++++|.+.++..++
T Consensus 287 ~~sh~~~v~~vvW~~~~~--~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 287 EVSHSEPVTAVVWLQNEH--NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred cccCCcCeEEEEEeccCC--CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence 357999999999987642 256778888999999987754322222111111111 1122345678999999999999
Q ss_pred EEecccceEEE-EeCC--cce----EEE-EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCC-cccCCceeeee
Q 017601 166 VARSFSKSIDV-YDQD--IHL----RTL-RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLR-MKENGGCLHRI 236 (369)
Q Consensus 166 ~~~s~d~~i~l-wd~~--~~~----~~~-~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~-~~~~~~~~~~~ 236 (369)
+| .++|.|.- -..+ ... ... ....|...+..+...||.+ ..+++++ |-+++||... .. .++..+
T Consensus 365 VG-Te~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~--k~fls~g-DW~vriWs~~~~~---~Pl~~~ 437 (555)
T KOG1587|consen 365 VG-TEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP--KNFLSVG-DWTVRIWSEDVIA---SPLLSL 437 (555)
T ss_pred EE-cCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc--ceeeeec-cceeEeccccCCC---Ccchhh
Confidence 98 88998766 2222 111 111 1222556777777777766 3566665 8999999877 33 566655
Q ss_pred eccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 237 CGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
..+ ...|++++|||.- .|+++..||.|.+||+.. ..++.+..-+ ....+.+.|++ .|+.|+.|..-|++.+|+
T Consensus 438 ~~~-~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~-~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 438 DSS-PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSP-NGKLLAVGDANGTTHILK 514 (555)
T ss_pred hhc-cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCC-CCcEEEEecCCCcEEEEE
Confidence 544 4669999999998 899999999999999976 4566666666 56677888888 999999999999999999
Q ss_pred CcC
Q 017601 313 WRE 315 (369)
Q Consensus 313 ~~~ 315 (369)
+..
T Consensus 515 l~~ 517 (555)
T KOG1587|consen 515 LSE 517 (555)
T ss_pred cCc
Confidence 964
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-11 Score=103.12 Aligned_cols=153 Identities=14% Similarity=0.238 Sum_probs=103.6
Q ss_pred EEEECCCCceeEEEEe-ccc-------ceEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE--cCCeE
Q 017601 153 GLCFSPSQWSMAAVAR-SFS-------KSIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT--EGCQL 219 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~-s~d-------~~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s--~d~~v 219 (369)
.+.|+|.+..+++... ..| +...||.++ .....+.... ...+..+.+. |++..|+.+. .+.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~-~~~I~~~~Ws---P~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK-EGPIHDVAWS---PNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC-CCceEEEEEC---cCCCEEEEEEccCCccc
Confidence 5788887776655552 112 234555432 2233332221 1235555554 4566776653 46799
Q ss_pred EEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC---CCcEEEEeCCCceeeeeccccccCceEEEEEcCCC
Q 017601 220 TIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA---DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSID 295 (369)
Q Consensus 220 ~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~---D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d 295 (369)
.|||++ . +.+..+. . ..++.+.|||+| +|++|+. .|.|.+||+++.+.+.+... ..++.++||| |
T Consensus 86 ~lyd~~-~---~~i~~~~-~--~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---~~~t~~~WsP-d 154 (194)
T PF08662_consen 86 TLYDVK-G---KKIFSFG-T--QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---SDATDVEWSP-D 154 (194)
T ss_pred EEEcCc-c---cEeEeec-C--CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc---CcEEEEEEcC-C
Confidence 999997 3 5666664 3 678999999999 8888764 46799999999888887653 3579999999 9
Q ss_pred CCEEEEEEC------CCeEEEEECcCCceeEE
Q 017601 296 SNYIYVQGV------DYEVFCGQWRESSKVFA 321 (369)
Q Consensus 296 ~~~l~s~s~------D~~i~vwd~~~~~~~~~ 321 (369)
|++|+++.. |+.++||+.. |+++..
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 999999864 8899999985 444444
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-11 Score=104.26 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=97.3
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEE--EeCCCcEEEEeCCCceeeeeccccccCceEEEEEcC
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAV--AGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSS 293 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~las--gs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp 293 (369)
+...||-++..+ ..+..+.....++|.+++|+|+| .||+ |..++.|.+||++ ++.+.++. ...+..+.|||
T Consensus 37 ~~~~l~~~~~~~--~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~---~~~~n~i~wsP 110 (194)
T PF08662_consen 37 GEFELFYLNEKN--IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG---TQPRNTISWSP 110 (194)
T ss_pred eeEEEEEEecCC--CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec---CCCceEEEECC
Confidence 356666665432 34444443213679999999999 6543 5567899999997 66676665 45678999999
Q ss_pred CCCCEEEEEECC---CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeC------CCcEEEEECC
Q 017601 294 IDSNYIYVQGVD---YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSD------SGSIFVADVV 355 (369)
Q Consensus 294 ~d~~~l~s~s~D---~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~------dg~I~iWd~~ 355 (369)
+|++|+.++.+ |.+.+||.++.+.+..+.... ...+..+|||++|++++. |+.++||+..
T Consensus 111 -~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 111 -DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -CCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 99999998865 569999999888887775332 345556889999998874 7899999985
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-10 Score=94.98 Aligned_cols=242 Identities=13% Similarity=0.140 Sum_probs=145.8
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCc-ccccccc-C-CCCCCCCCCeeEEEECCCC
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVD-RLTYSVL-P-QDCGVGEGSWSGLCFSPSQ 160 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~~~l~~~p~~ 160 (369)
.++...+|.+.|+.++|..+ .+|..+| |.|+-|......+... ...+.+. | +.....-..+.++...|..
T Consensus 54 ~iv~eqahdgpiy~~~f~d~-----~Lls~gd--G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e 126 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFHDD-----FLLSGGD--GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE 126 (325)
T ss_pred ceeeccccCCCeeeeeeehh-----heeeccC--ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC
Confidence 44445899999999999864 3444444 8887777654321110 1111111 1 1212222346678888866
Q ss_pred ceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 161 WSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
+.++.. +.|+.+.-||++. ..+.++. |..-+..+. .-+..+.++++++||++||||.+++ ++++.+..
T Consensus 127 nSi~~A--gGD~~~y~~dlE~G~i~r~~rG--HtDYvH~vv---~R~~~~qilsG~EDGtvRvWd~kt~---k~v~~ie~ 196 (325)
T KOG0649|consen 127 NSILFA--GGDGVIYQVDLEDGRIQREYRG--HTDYVHSVV---GRNANGQILSGAEDGTVRVWDTKTQ---KHVSMIEP 196 (325)
T ss_pred CcEEEe--cCCeEEEEEEecCCEEEEEEcC--Ccceeeeee---ecccCcceeecCCCccEEEEecccc---ceeEEecc
Confidence 655544 3689999999863 3333332 332222222 2123569999999999999999999 77766542
Q ss_pred c---------CCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 239 S---------VGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 239 ~---------~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
. .+..|.+++-+.+ ++++|+ ...+.+|.+|..++...+.- ...|..+.|-. ..+++++.-+.|.
T Consensus 197 yk~~~~lRp~~g~wigala~~ed-WlvCGg-Gp~lslwhLrsse~t~vfpi--pa~v~~v~F~~---d~vl~~G~g~~v~ 269 (325)
T KOG0649|consen 197 YKNPNLLRPDWGKWIGALAVNED-WLVCGG-GPKLSLWHLRSSESTCVFPI--PARVHLVDFVD---DCVLIGGEGNHVQ 269 (325)
T ss_pred ccChhhcCcccCceeEEEeccCc-eEEecC-CCceeEEeccCCCceEEEec--ccceeEeeeec---ceEEEecccccee
Confidence 1 1345666664322 777765 45689999999888776653 24578888855 6788899889999
Q ss_pred EEECcCCceeEEEE-cCCCeeeeeE-cC--CCCEEEEEeCCCcEEEE
Q 017601 310 CGQWRESSKVFAFR-GDSNWLGFSK-CS--NRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 310 vwd~~~~~~~~~~~-g~~~~~~~~~-~~--d~~~l~sgs~dg~I~iW 352 (369)
-|.+.. .+..... ++. ..... .. --++|-.++..+.+.|.
T Consensus 270 ~~~l~G-vl~a~ip~~s~--~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 270 SYTLNG-VLQANIPVEST--ACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eeeecc-EEEEeccCCcc--ceeeecccCCceEEEEecccceeeeee
Confidence 998754 2222222 222 11111 11 12455566666666665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=116.80 Aligned_cols=225 Identities=10% Similarity=0.098 Sum_probs=143.4
Q ss_pred eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccce
Q 017601 94 EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKS 173 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~ 173 (369)
.|+.++|.||+ ..++.++++ ++.++|...+.. -..+.+|... +.+++|+. ++..+|++ +.|+.
T Consensus 14 ci~d~afkPDG---sqL~lAAg~--rlliyD~ndG~l-----lqtLKgHKDt-----VycVAys~-dGkrFASG-~aDK~ 76 (1081)
T KOG1538|consen 14 CINDIAFKPDG---TQLILAAGS--RLLVYDTSDGTL-----LQPLKGHKDT-----VYCVAYAK-DGKRFASG-SADKS 76 (1081)
T ss_pred chheeEECCCC---ceEEEecCC--EEEEEeCCCccc-----ccccccccce-----EEEEEEcc-CCceeccC-CCcee
Confidence 89999999996 344444333 699999886621 1223344332 45899999 56689998 99999
Q ss_pred EEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC
Q 017601 174 IDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG 253 (369)
Q Consensus 174 i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g 253 (369)
|.+|.... .-.+ ...|...+.+.. |+|-...|++++- ...-+|..... .+...... ..+.+++|..||
T Consensus 77 VI~W~~kl-EG~L-kYSH~D~IQCMs---FNP~~h~LasCsL-sdFglWS~~qK----~V~K~kss--~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 77 VIIWTSKL-EGIL-KYSHNDAIQCMS---FNPITHQLASCSL-SDFGLWSPEQK----SVSKHKSS--SRIICCSWTNDG 144 (1081)
T ss_pred EEEecccc-ccee-eeccCCeeeEee---cCchHHHhhhcch-hhccccChhhh----hHHhhhhh--eeEEEeeecCCC
Confidence 99997531 1112 233445555554 4454556777664 34668977653 34333333 789999999999
Q ss_pred -cEEEEeCCCcEEEEeCCCceeeeec---cccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC----
Q 017601 254 -NIAVAGADRTVTIYDPRRWSALSRW---VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD---- 325 (369)
Q Consensus 254 -~lasgs~D~~v~vwD~~~~~~~~~~---~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~---- 325 (369)
+++.|-.||||.+-+. ++++...+ -|. ..+|.+++|+|..+ -|.+..+-+-||...-..+.+.|.
T Consensus 145 qylalG~~nGTIsiRNk-~gEek~~I~Rpgg~-Nspiwsi~~~p~sg-----~G~~di~aV~DW~qTLSFy~LsG~~Igk 217 (1081)
T KOG1538|consen 145 QYLALGMFNGTISIRNK-NGEEKVKIERPGGS-NSPIWSICWNPSSG-----EGRNDILAVADWGQTLSFYQLSGKQIGK 217 (1081)
T ss_pred cEEEEeccCceEEeecC-CCCcceEEeCCCCC-CCCceEEEecCCCC-----CCccceEEEEeccceeEEEEecceeecc
Confidence 9999999999998753 34443333 355 78999999999433 233344444454432222222221
Q ss_pred CCe-----eeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 326 SNW-----LGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 326 ~~~-----~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
.+- ..+..+++|+++..|+.|+.+.++--
T Consensus 218 ~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 218 DRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred cccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence 100 23444669999999999999988853
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=113.94 Aligned_cols=109 Identities=21% Similarity=0.216 Sum_probs=91.3
Q ss_pred CCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc
Q 017601 203 PVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC 281 (369)
Q Consensus 203 ~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h 281 (369)
|++|+..|++++.||.+||||..+. ..+..++ .+-+...|++||||| +|++|++|--|.||.+...+.+..-.+|
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHH---HHHHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc
Confidence 4468889999999999999999886 3333332 235779999999999 9999999999999999999999999999
Q ss_pred ccCceEEEEEcCC----------------------------------CC-------------CEEEEEECCCeEEEEECc
Q 017601 282 SKYEITGLSFSSI----------------------------------DS-------------NYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 282 ~~~~v~~l~~sp~----------------------------------d~-------------~~l~s~s~D~~i~vwd~~ 314 (369)
+..|..|+|.|. ++ -.+.|.+.|..+++||+.
T Consensus 374 -kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt 452 (636)
T KOG2394|consen 374 -KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT 452 (636)
T ss_pred -ccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence 999999999831 01 247889999999999997
Q ss_pred CC
Q 017601 315 ES 316 (369)
Q Consensus 315 ~~ 316 (369)
..
T Consensus 453 eD 454 (636)
T KOG2394|consen 453 ED 454 (636)
T ss_pred hh
Confidence 64
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-11 Score=117.21 Aligned_cols=207 Identities=16% Similarity=0.088 Sum_probs=126.9
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEec---CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDS---YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
+..|...|.+.+|+||+ ..|+..+. ...|++||+.++.. ..+.... + ....++|+|++. .+
T Consensus 199 lt~~~~~v~~p~wSPDG----~~la~~s~~~~~~~i~i~dl~tg~~------~~l~~~~-g----~~~~~~wSPDG~-~L 262 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDG----SKLAYVSFENKKSQLVVHDLRSGAR------KVVASFR-G----HNGAPAFSPDGS-RL 262 (429)
T ss_pred eccCCCccccceEcCCC----CEEEEEEecCCCcEEEEEeCCCCce------EEEecCC-C----ccCceeECCCCC-EE
Confidence 34677789999999985 44554432 34699999875421 0111100 0 112589999654 45
Q ss_pred EEEecccceEEEE--eCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccC
Q 017601 165 AVARSFSKSIDVY--DQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 165 a~~~s~d~~i~lw--d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
+.+.+.++.+.|| |.. ...+.+.. +........ ++||+..++.++ .++..+||++.... .....+.+.
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~~~~lt~--~~~~~~~~~---wSpDG~~i~f~s~~~g~~~I~~~~~~~--~~~~~l~~~- 334 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGTPSQLTS--GAGNNTEPS---WSPDGQSILFTSDRSGSPQVYRMSASG--GGASLVGGR- 334 (429)
T ss_pred EEEEecCCcEEEEEEECCCCCeEeecc--CCCCcCCEE---ECCCCCEEEEEECCCCCceEEEEECCC--CCeEEecCC-
Confidence 5543667877776 543 23333321 221111122 346777777666 46888999876431 223333222
Q ss_pred CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECc--CCc
Q 017601 241 GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR--ESS 317 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~--~~~ 317 (369)
. ++.+|+|+| .|+..+.++ +.+||+.+++.......+ ...++.|+| |+++|+.++.++.+.+|++. .++
T Consensus 335 -~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 335 -G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred -C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCC
Confidence 2 567899999 887777766 455999887654322222 235678999 99999999999999988863 467
Q ss_pred eeEEEEcCC
Q 017601 318 KVFAFRGDS 326 (369)
Q Consensus 318 ~~~~~~g~~ 326 (369)
..+.+.+|.
T Consensus 407 ~~~~l~~~~ 415 (429)
T PRK01742 407 FKARLPGSD 415 (429)
T ss_pred ceEEccCCC
Confidence 777776665
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=110.80 Aligned_cols=193 Identities=14% Similarity=0.174 Sum_probs=137.9
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
.++|++ ++..++++ +.|+++|+|+.+.....+....+...+..+. |++|+..|++.+.| ..+|||.+++ .+
T Consensus 149 ~vaf~~-~gs~latg-g~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~---FS~dgk~lasig~d-~~~VW~~~~g---~~ 219 (398)
T KOG0771|consen 149 VVAFNG-DGSKLATG-GTDGTLRVWEWPSMLTILEEIAHHAEVKDLD---FSPDGKFLASIGAD-SARVWSVNTG---AA 219 (398)
T ss_pred EEEEcC-CCCEeeec-cccceEEEEecCcchhhhhhHhhcCccccce---eCCCCcEEEEecCC-ceEEEEeccC---ch
Confidence 589999 45678888 8999999999665444443444555555555 56677788889988 9999999998 66
Q ss_pred eeeeeccC-CCcEEEEEECCCC-----cEEE-EeCCCcEEEEeCCCcee-----eeeccccccCceEEEEEcCCCCCEEE
Q 017601 233 LHRICGSV-GDILYAVCSSSTG-----NIAV-AGADRTVTIYDPRRWSA-----LSRWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 233 ~~~~~~~~-~~~v~~v~~sp~g-----~las-gs~D~~v~vwD~~~~~~-----~~~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
+++..... ...+..+.|+.++ ++|+ ...-+.|+.||+..+.- ..+...- ...|++++.|+ +|++++
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~-dGkf~A 297 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSD-DGKFLA 297 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcC-CCcEEE
Confidence 66544211 2456667887765 3333 34556788888765332 1111122 25799999999 999999
Q ss_pred EEECCCeEEEEECcCCceeEEE-EcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 301 VQGVDYEVFCGQWRESSKVFAF-RGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 301 s~s~D~~i~vwd~~~~~~~~~~-~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
.|+.||.|-|++..+-++++.. +.|... .+++.+||.+.+++.|.|..+.+-.+.-
T Consensus 298 lGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999886666555 457622 2455588999999999999998887654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-10 Score=100.63 Aligned_cols=153 Identities=19% Similarity=0.191 Sum_probs=113.3
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEEE--EcCCeEEEEeCC
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAV--TEGCQLTIWDLR 225 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~--s~d~~v~iwD~~ 225 (369)
+.++.+.++ .+++. ....|.+|... +..+.+.+...|..+..+... .+..+++. -.-|+|+|-|+.
T Consensus 97 I~~V~l~r~---riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~----~~k~~LafPg~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 97 IKAVKLRRD---RIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT----SNKSLLAFPGFKTGQVQIVDLA 167 (346)
T ss_pred eeeEEEcCC---eEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCC----CCceEEEcCCCccceEEEEEhh
Confidence 557888772 34443 46789999765 455555555566665444321 13456663 346899999998
Q ss_pred cccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcE-EEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEE
Q 017601 226 MKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTV-TIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v-~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
..+.+ .-..+..| ...|.|++.+-+| ++||+|..||+ +|||.++++.+.++. |-....|.+++||| +..+|+.+
T Consensus 168 ~~~~~-~p~~I~AH-~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~Lavs 244 (346)
T KOG2111|consen 168 STKPN-APSIINAH-DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVS 244 (346)
T ss_pred hcCcC-CceEEEcc-cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEE
Confidence 66322 12334444 5999999999999 99999999985 999999999999887 32246799999999 99999999
Q ss_pred ECCCeEEEEECcC
Q 017601 303 GVDYEVFCGQWRE 315 (369)
Q Consensus 303 s~D~~i~vwd~~~ 315 (369)
|.-|++.||.++.
T Consensus 245 SdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 245 SDKGTLHIFSLRD 257 (346)
T ss_pred cCCCeEEEEEeec
Confidence 9999999999876
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-11 Score=101.31 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=101.9
Q ss_pred ceeEEEEecccceEEEEeCCcceEEEEeee----------CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC
Q 017601 161 WSMAAVARSFSKSIDVYDQDIHLRTLRTLW----------YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG 230 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~ 230 (369)
...++.++.+++.+-+||.......+...+ +...+..+.+ .+....=++++.+..+..|.+.... +
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy---as~~~rGisgga~dkl~~~Sl~~s~-g 239 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY---ASSCDRGISGGADDKLVMYSLNHST-G 239 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee---chhhcCCcCCCccccceeeeecccc-C
Confidence 345566658899999999865433322211 1111212221 1111233445556678888876431 1
Q ss_pred ce-e-eeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 231 GC-L-HRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 231 ~~-~-~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
.+ + ..+... .-.|..+..-||+ .+|++++|+.|+||..++..++..++-| ...|++++|+| +...+|++|.|.+
T Consensus 240 slq~~~e~~lk-npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-sagvn~vAfsp-d~~lmAaaskD~r 316 (323)
T KOG0322|consen 240 SLQIRKEITLK-NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-SAGVNAVAFSP-DCELMAAASKDAR 316 (323)
T ss_pred cccccceEEec-CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-hcceeEEEeCC-CCchhhhccCCce
Confidence 11 1 112222 2567888999999 9999999999999999999999999999 89999999999 9999999999999
Q ss_pred EEEEEC
Q 017601 308 VFCGQW 313 (369)
Q Consensus 308 i~vwd~ 313 (369)
|-+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.2e-11 Score=105.26 Aligned_cols=253 Identities=13% Similarity=0.133 Sum_probs=157.4
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccccc----ccCCCCCC-------CCCCeeEEEECCCCc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYS----VLPQDCGV-------GEGSWSGLCFSPSQW 161 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~l~~~p~~~ 161 (369)
+-|.+|.|... +.+||++|..|+|-++.-+...+. .|. .+.|.... -++-+..+.|.++++
T Consensus 26 diis~vef~~~----Ge~LatGdkgGRVv~f~r~~~~~~----ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 26 DIISAVEFDHY----GERLATGDKGGRVVLFEREKLYKG----EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN 97 (433)
T ss_pred cceeeEEeecc----cceEeecCCCCeEEEeeccccccc----ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence 55778999887 479999999999999877654321 111 12222111 122345677776544
Q ss_pred -eeEEEEecccceEEEEeCCcc-----------------eEEEEe-------------------eeCCcceeeeccCCCC
Q 017601 162 -SMAAVARSFSKSIDVYDQDIH-----------------LRTLRT-------------------LWYPSSLNFVQNLSPV 204 (369)
Q Consensus 162 -~~~a~~~s~d~~i~lwd~~~~-----------------~~~~~~-------------------~~~~~~v~~~~~~~~~ 204 (369)
..+... ..|++|++|.+... +..++. ..|+..++.+. ++
T Consensus 98 ~a~FLls-tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS---~N 173 (433)
T KOG1354|consen 98 LAEFLLS-TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS---VN 173 (433)
T ss_pred ccEEEEe-cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee---ec
Confidence 345555 68999999965210 011110 01222333332 34
Q ss_pred CCCCcEEEEEcCCeEEEEeCCcccCCceeee--eeccC----CCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCcee--
Q 017601 205 NGGPNMLAVTEGCQLTIWDLRMKENGGCLHR--ICGSV----GDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSA-- 274 (369)
Q Consensus 205 ~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~--~~~~~----~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~-- 274 (369)
.|...+++ ++|=.|-||.+.... ++... ++.++ ..-|++..|+|.. .++-.+..|+|++-|+|...+
T Consensus 174 sD~Et~lS-ADdLRINLWnlei~d--~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 174 SDKETFLS-ADDLRINLWNLEIID--QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD 250 (433)
T ss_pred CccceEee-ccceeeeeccccccC--CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence 45555554 677889999987543 33222 22221 3568999999998 778888899999999995221
Q ss_pred ----eee----------ccccccCceEEEEEcCCCCCEEEEEECC-CeEEEEECcC-CceeEEEEcCCC-----------
Q 017601 275 ----LSR----------WVHCSKYEITGLSFSSIDSNYIYVQGVD-YEVFCGQWRE-SSKVFAFRGDSN----------- 327 (369)
Q Consensus 275 ----~~~----------~~~h~~~~v~~l~~sp~d~~~l~s~s~D-~~i~vwd~~~-~~~~~~~~g~~~----------- 327 (369)
+.. +.+- -..|..+.|++ +|+++++ .| -+|++||++. .+.+.++.-|..
T Consensus 251 ~hsKlfEepedp~~rsffsei-IsSISDvKFs~-sGryils--RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEI-ISSISDVKFSH-SGRYILS--RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred chhhhhccccCCcchhhHHHH-hhhhhceEEcc-CCcEEEE--eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence 111 1111 24588999999 9999987 55 4899999954 566666665531
Q ss_pred ---eeeeeEcC--CCCEEEEEeCCCcEEEEECCCCcchhhhc
Q 017601 328 ---WLGFSKCS--NRDVLGGWSDSGSIFVADVVAKENEISAL 364 (369)
Q Consensus 328 ---~~~~~~~~--d~~~l~sgs~dg~I~iWd~~~~~~~~~~l 364 (369)
+..+..+- ++..+++||..+..+++++..|..+-.++
T Consensus 327 D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl 368 (433)
T KOG1354|consen 327 DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTL 368 (433)
T ss_pred cchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecc
Confidence 11122222 56699999999999999987775544444
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=108.52 Aligned_cols=239 Identities=13% Similarity=0.144 Sum_probs=143.6
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEE-EecCCCCCCcccccc-ccC--CCCCCCCCCeeEEEECCCCceeE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVS-KLDTSGKDVDRLTYS-VLP--QDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~-~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
..|..-|+++.|+..+ ..+.+.|+. .+++| ++.....++-..... +.+ |-.+.+.++ ..+...+
T Consensus 11 ~r~~e~vc~v~w~~~e----ei~~~~dDh-~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~-------g~~~d~~ 78 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNE----EIYFVSDDH-QIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGG-------GKGSDTL 78 (737)
T ss_pred cccceeEEeecccccc----eEEEeccCc-eEEEeecccchhhhhhhCCcccCCccccccccccCC-------CCCcceE
Confidence 4677888899998764 455555554 44444 444332111110000 011 000111100 0133467
Q ss_pred EEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceee-eeeccCCCc
Q 017601 165 AVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLH-RICGSVGDI 243 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~-~~~~~~~~~ 243 (369)
+.+ +.||.+.|..-...+...- ..|... +.+...++||.-|+++++||.|+||.- ++ .++ ++... ..+
T Consensus 79 ~i~-s~DGkf~il~k~~rVE~sv-~AH~~A---~~~gRW~~dGtgLlt~GEDG~iKiWSr-sG----MLRStl~Q~-~~~ 147 (737)
T KOG1524|consen 79 LIC-SNDGRFVILNKSARVERSI-SAHAAA---ISSGRWSPDGAGLLTAGEDGVIKIWSR-SG----MLRSTVVQN-EES 147 (737)
T ss_pred EEE-cCCceEEEecccchhhhhh-hhhhhh---hhhcccCCCCceeeeecCCceEEEEec-cc----hHHHHHhhc-Cce
Confidence 777 8899998886543222211 112222 222345678999999999999999974 33 222 12212 488
Q ss_pred EEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC-----
Q 017601 244 LYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES----- 316 (369)
Q Consensus 244 v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~----- 316 (369)
|+|++|.|+. .+.+.+. .+.|=-+.-...+-.|+.| .+-|.++.|+| ..++++|||.|-..++||-...
T Consensus 148 v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k~i~WkAH-DGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S 223 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQGG--HISIKPLAANSKIIRWRAH-DGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTS 223 (737)
T ss_pred eEEEEECCCCCceEEecCC--eEEEeecccccceeEEecc-CcEEEEeecCc-cccceeecCCceeEEeecccCcccccC
Confidence 9999999999 5555543 4555455556667789999 99999999999 8899999999999999996531
Q ss_pred --------------ceeEEEEcC----------CCeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 317 --------------SKVFAFRGD----------SNWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 317 --------------~~~~~~~g~----------~~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
+..+.+-.| ....++..++||..+++|...|.+.+-.+
T Consensus 224 ~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 224 AAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 111111111 01123333568999999998888876544
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.9e-11 Score=117.57 Aligned_cols=187 Identities=10% Similarity=0.070 Sum_probs=130.9
Q ss_pred ceeEEEEecccceEEEEeCCcceEEEEeeeCCcceee--eccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 161 WSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNF--VQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
...++.. ..+..+-+||.....-.. ...+...... ..-..++++.-++.+++.-+.|.+|+... +.+++ .+.+
T Consensus 99 ~k~i~l~-~~~ns~~i~d~~~~~~~~-~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~--dn~p~-~l~G 173 (967)
T KOG0974|consen 99 NKKIALV-TSRNSLLIRDSKNSSVLS-KIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE--DNKPI-RLKG 173 (967)
T ss_pred cceEEEE-EcCceEEEEecccCceeh-hcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc--cCCcc-eecc
Confidence 3455555 456778888864221111 1111111111 11111223344666777789999999982 22444 5666
Q ss_pred cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee-eccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 239 SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS-RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
| .+.|.++.|+-|| ++++.|+|+++++|++.+.+... +.-+| ...|..+.|.| + .++|++.|.+.++|+.+..
T Consensus 174 H-eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH-saRvw~~~~~~-n--~i~t~gedctcrvW~~~~~ 248 (967)
T KOG0974|consen 174 H-EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH-SARVWACCFLP-N--RIITVGEDCTCRVWGVNGT 248 (967)
T ss_pred c-CCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc-cceeEEEEecc-c--eeEEeccceEEEEEecccc
Confidence 6 6999999999999 99999999999999999987776 77799 99999999999 4 9999999999999977653
Q ss_pred ceeEEEEcCCCe--eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 317 SKVFAFRGDSNW--LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 317 ~~~~~~~g~~~~--~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+..+.+|..- ..+....+...+++++.|+.+++||+....
T Consensus 249 -~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 249 -QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred -eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 33477776521 122223366788999999999999987654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-10 Score=98.80 Aligned_cols=206 Identities=11% Similarity=0.049 Sum_probs=143.6
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
..|++-+|++| ...+|..-.+-.|.|+...... .-.....+..|+ ..+++++|+| ..+.|++| +.|.
T Consensus 11 ~pitchAwn~d----rt~iAv~~~~~evhiy~~~~~~--~w~~~htls~Hd-----~~vtgvdWap-~snrIvtc-s~dr 77 (361)
T KOG1523|consen 11 EPITCHAWNSD----RTQIAVSPNNHEVHIYSMLGAD--LWEPAHTLSEHD-----KIVTGVDWAP-KSNRIVTC-SHDR 77 (361)
T ss_pred CceeeeeecCC----CceEEeccCCceEEEEEecCCC--CceeceehhhhC-----cceeEEeecC-CCCceeEc-cCCC
Confidence 67999999998 3677777777788888776431 011111222233 3466899999 45578888 8999
Q ss_pred eEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 173 SIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 173 ~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
.-.+|... +-..++-.+.......++.+.| .++.|+.+|....|.||=+...++--.-+.+.-+....|++++|
T Consensus 78 nayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP---~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 78 NAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP---KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred CccccccCCCCeeccceeEEEeccceeeEeecC---cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence 99999762 2223333444455666777655 35688888888999999887543221111222111478999999
Q ss_pred CCCC-cEEEEeCCCcEEEEeCC-----C-------------ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 250 SSTG-NIAVAGADRTVTIYDPR-----R-------------WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 250 sp~g-~lasgs~D~~v~vwD~~-----~-------------~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
+|++ +|++|+.|+..+||..- . |+.+.++... .+.|..+.|+| +|..|+=.+.|.++.+
T Consensus 155 hpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~-ggwvh~v~fs~-sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 155 HPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS-GGWVHGVLFSP-SGNRLAWVGHDSTVSF 232 (361)
T ss_pred cCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-CCceeeeEeCC-CCCEeeEecCCCceEE
Confidence 9999 99999999999998631 1 2233444334 57899999999 9999999999999999
Q ss_pred EECcCC
Q 017601 311 GQWRES 316 (369)
Q Consensus 311 wd~~~~ 316 (369)
-|....
T Consensus 233 ~da~~p 238 (361)
T KOG1523|consen 233 VDAAGP 238 (361)
T ss_pred eecCCC
Confidence 998764
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-10 Score=100.63 Aligned_cols=200 Identities=10% Similarity=0.044 Sum_probs=144.0
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
+++-||++ +...+|++ -..+.|.||... .+-...+++. |...++.+.+.+ ..++|++++.|..-.+|....+
T Consensus 13 itchAwn~-drt~iAv~-~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap---~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 13 ITCHAWNS-DRTQIAVS-PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP---KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eeeeeecC-CCceEEec-cCCceEEEEEecCCCCceeceehhhhCcceeEEeecC---CCCceeEccCCCCccccccCCC
Confidence 56889999 45678887 677899999753 2234444443 445566666644 4569999999999999998544
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc----eeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW----SALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~----~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
..-++...+... ....++|.|+|.+ .||+||.-+.|.||-.+.. ...+.-+.+ ++.|++++|+| ++-+|+.|
T Consensus 88 ~~WkptlvLlRi-NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi-rStv~sldWhp-nnVLlaaG 164 (361)
T KOG1523|consen 88 GTWKPTLVLLRI-NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI-RSTVTSLDWHP-NNVLLAAG 164 (361)
T ss_pred CeeccceeEEEe-ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcc-ccceeeeeccC-Ccceeccc
Confidence 333333333322 4789999999999 9999999999999876642 122223345 78899999999 99999999
Q ss_pred ECCCeEEEEEC-----cC-------------CceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 303 GVDYEVFCGQW-----RE-------------SSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 303 s~D~~i~vwd~-----~~-------------~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|.|+..|++.. ++ ++++..+.....| .++..+++|..|+=.+.|.++.+=|.....
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999999853 11 3455555322223 345557799999999999999999887654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-09 Score=92.63 Aligned_cols=174 Identities=13% Similarity=0.106 Sum_probs=120.0
Q ss_pred ceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC-CCcEEEEE
Q 017601 172 KSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV-GDILYAVC 248 (369)
Q Consensus 172 ~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~-~~~v~~v~ 248 (369)
..|-|||-- ..+..+........+... ..+++.+ -.+.|.+|...+.. +.++.+.... ...+.+++
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~--------r~riVvv-l~~~I~VytF~~n~--k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLR--------RDRIVVV-LENKIYVYTFPDNP--KLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEc--------CCeEEEE-ecCeEEEEEcCCCh--hheeeeecccCCCceEeec
Confidence 579999843 333333222222333222 2355554 45789999988442 4555544321 13343333
Q ss_pred ECCCC-cEEE-EeCCCcEEEEeCCCcee--eeeccccccCceEEEEEcCCCCCEEEEEECCCe-EEEEECcCCceeEEEE
Q 017601 249 SSSTG-NIAV-AGADRTVTIYDPRRWSA--LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE-VFCGQWRESSKVFAFR 323 (369)
Q Consensus 249 ~sp~g-~las-gs~D~~v~vwD~~~~~~--~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~-i~vwd~~~~~~~~~~~ 323 (369)
-+.+. .||. |-.-|.|+|-|+...+. -..+.+| ...|.+++.+- +|..+||+|..|+ |||||..+++.+..++
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH-~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~R 221 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH-DSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELR 221 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc-cCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeee
Confidence 33333 5655 45678999999987555 4677899 99999999999 9999999999996 8999999999999995
Q ss_pred -c--CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 324 -G--DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 324 -g--~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
| +.....+..+++..+||..|+.|+|.|+.++...
T Consensus 222 RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 222 RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 3 2233456667899999999999999999987644
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=104.14 Aligned_cols=166 Identities=9% Similarity=-0.016 Sum_probs=122.9
Q ss_pred CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc---cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEE
Q 017601 191 YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK---ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTI 266 (369)
Q Consensus 191 ~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~---~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~v 266 (369)
|..+++.++ |+..+..|+++++|..+++|.+... ...+++....+++...|.|++|+..+ .+.+|+.+++|.+
T Consensus 55 H~GCiNAlq---FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 55 HTGCINALQ---FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hccccceee---eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 445555555 3344678888999999999998521 11156666555546899999999988 9999999999999
Q ss_pred EeCCCceeeeecccc-ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc-ee--EEE-EcCCCeeeeeEcC-CCCEE
Q 017601 267 YDPRRWSALSRWVHC-SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS-KV--FAF-RGDSNWLGFSKCS-NRDVL 340 (369)
Q Consensus 267 wD~~~~~~~~~~~~h-~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~-~~--~~~-~g~~~~~~~~~~~-d~~~l 340 (369)
-|+.+.+.+..+... ..+.|+.+..+| ..+.|++.+.|+.|.+||.+... .+ +.. .-..++......| ...+|
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999998887765522 145899999999 68899999999999999998633 11 111 1122233444444 77899
Q ss_pred EEEeCCCcEEEEECCCCcch
Q 017601 341 GGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 341 ~sgs~dg~I~iWd~~~~~~~ 360 (369)
++.++.+-+.+||.+.....
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~ 230 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARP 230 (609)
T ss_pred EeccccCCCCceeeccccch
Confidence 99999999999999876543
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-12 Score=124.54 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=92.7
Q ss_pred CCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccccc
Q 017601 205 NGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSK 283 (369)
Q Consensus 205 ~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~ 283 (369)
-.+.+++++++|..++||.+.+. .++....+| .+.|+.++.+.++ .+|++|.|..|++|-++.+.++..+.+| +
T Consensus 200 rtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGh-s~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrgh-t 274 (1113)
T KOG0644|consen 200 RTGRYIITGSDDRLVKIWSMETA---RCLASCRGH-SGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGH-T 274 (1113)
T ss_pred cccceEeecCccceeeeeeccch---hhhccCCCC-ccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcc-c
Confidence 34778999999999999999888 888888887 7899999999999 9999999999999999999999999999 9
Q ss_pred CceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
+.|++++|+| .++.+.||++++||++
T Consensus 275 gavtaiafsP-----~~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 275 GAVTAIAFSP-----RASSSDDGTCRIWDAR 300 (1113)
T ss_pred cceeeeccCc-----cccCCCCCceEecccc
Confidence 9999999999 3388999999999998
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-10 Score=105.30 Aligned_cols=180 Identities=15% Similarity=0.135 Sum_probs=117.8
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEe
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRT 188 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~ 188 (369)
..++-.+++|++.+.+-.... ...+..|... +.+-.|+|++-. ++++ ++||.|++|.-....++. .
T Consensus 76 d~~~i~s~DGkf~il~k~~rV------E~sv~AH~~A-----~~~gRW~~dGtg-Llt~-GEDG~iKiWSrsGMLRSt-l 141 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARV------ERSISAHAAA-----ISSGRWSPDGAG-LLTA-GEDGVIKIWSRSGMLRST-V 141 (737)
T ss_pred ceEEEEcCCceEEEecccchh------hhhhhhhhhh-----hhhcccCCCCce-eeee-cCCceEEEEeccchHHHH-H
Confidence 456666778888775433211 1223333332 235678996655 4555 799999999865443332 1
Q ss_pred eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEE
Q 017601 189 LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIY 267 (369)
Q Consensus 189 ~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vw 267 (369)
.+....+.++.|.| +.+.++.+.. +.+.|=-+... ..+-+...| .+-|.++.|+|.+ .+++|++|-..+||
T Consensus 142 ~Q~~~~v~c~~W~p---~S~~vl~c~g-~h~~IKpL~~n---~k~i~WkAH-DGiiL~~~W~~~s~lI~sgGED~kfKvW 213 (737)
T KOG1524|consen 142 VQNEESIRCARWAP---NSNSIVFCQG-GHISIKPLAAN---SKIIRWRAH-DGLVLSLSWSTQSNIIASGGEDFRFKIW 213 (737)
T ss_pred hhcCceeEEEEECC---CCCceEEecC-CeEEEeecccc---cceeEEecc-CcEEEEeecCccccceeecCCceeEEee
Confidence 23344555555544 3446666543 45666666655 333344444 4899999999999 99999999999999
Q ss_pred eCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 268 DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 268 D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
|.. |..+.+-..| ..+|++++|+| + ..++.+| -++.|+=..+.
T Consensus 214 D~~-G~~Lf~S~~~-ey~ITSva~np-d-~~~~v~S-~nt~R~~~p~~ 256 (737)
T KOG1524|consen 214 DAQ-GANLFTSAAE-EYAITSVAFNP-E-KDYLLWS-YNTARFSSPRV 256 (737)
T ss_pred ccc-CcccccCChh-ccceeeeeecc-c-cceeeee-eeeeeecCCCc
Confidence 954 7788888889 99999999999 7 5566655 34666443333
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-09 Score=97.76 Aligned_cols=195 Identities=15% Similarity=0.111 Sum_probs=123.9
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN 229 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~ 229 (369)
..+++|++ .-..+|++ ..|-.|++||-.. ....++. .....+..+.+-|.+ ..-++++--+-|.||......+
T Consensus 101 lr~~aWhq-H~~~fava-~nddvVriy~ksst~pt~Lks-~sQrnvtclawRPls---aselavgCr~gIciW~~s~tln 174 (445)
T KOG2139|consen 101 LRGVAWHQ-HIIAFAVA-TNDDVVRIYDKSSTCPTKLKS-VSQRNVTCLAWRPLS---ASELAVGCRAGICIWSDSRTLN 174 (445)
T ss_pred eeeEeech-hhhhhhhh-ccCcEEEEeccCCCCCceecc-hhhcceeEEEeccCC---cceeeeeecceeEEEEcCcccc
Confidence 45799999 44567777 7899999998643 2222221 122445555555543 3566666666799997653211
Q ss_pred C---------ceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCE
Q 017601 230 G---------GCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNY 298 (369)
Q Consensus 230 ~---------~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~ 298 (369)
. .+.+.+++....+|+++.|++|| .+++++- |..|.|||+.++..+.-..-- .+.++-+.||| |+.+
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-lgg~slLkwSP-dgd~ 252 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG-LGGFSLLKWSP-DGDV 252 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC-CCceeeEEEcC-CCCE
Confidence 1 12233343323789999999999 8888874 778999999997665543222 46789999999 9999
Q ss_pred EEEEECCCeEEEEECcC-CceeEEEEcCCCeeeeeEcCCCCE-EEEEeCCCcEEEEE
Q 017601 299 IYVQGVDYEVFCGQWRE-SSKVFAFRGDSNWLGFSKCSNRDV-LGGWSDSGSIFVAD 353 (369)
Q Consensus 299 l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~~~~~~~~~d~~~-l~sgs~dg~I~iWd 353 (369)
|..+.-|+..++|+... -...+-.-+..+..+-...++|++ |++.+.+-.++--.
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 99999999999996543 112222222222233333566665 45555555554433
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-09 Score=101.27 Aligned_cols=247 Identities=15% Similarity=0.060 Sum_probs=147.9
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
=|.++|++++|++++ ..|.|+...|-+-+|.+.++. ..+.|.-. ..+..+.++|++... ++. .
T Consensus 249 WH~~~V~~L~fS~~G----~~LlSGG~E~VLv~Wq~~T~~-------kqfLPRLg----s~I~~i~vS~ds~~~-sl~-~ 311 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDG----AYLLSGGREGVLVLWQLETGK-------KQFLPRLG----SPILHIVVSPDSDLY-SLV-L 311 (792)
T ss_pred ecccccceeEEecCC----ceEeecccceEEEEEeecCCC-------cccccccC----CeeEEEEEcCCCCeE-EEE-e
Confidence 377899999999984 689999999999999998763 22333221 236689999966544 444 4
Q ss_pred ccceEEEEeCCc--ceEEEEeeeCC--c----ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC-
Q 017601 170 FSKSIDVYDQDI--HLRTLRTLWYP--S----SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV- 240 (369)
Q Consensus 170 ~d~~i~lwd~~~--~~~~~~~~~~~--~----~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~- 240 (369)
.|.+|.+-.... ...++.....+ . .-.+......+|..+.++-.+..+.|++||+-+......++....++
T Consensus 312 ~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~ 391 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYS 391 (792)
T ss_pred cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeeccc
Confidence 799999886521 11111111111 0 00111111123434567778889999999998773322222222111
Q ss_pred ------CCcEEEEEECCCC-cEEEEeC--------CC--cEEEEeCCC----ceeeeec-cccccCceEEEEEcCCCCC-
Q 017601 241 ------GDILYAVCSSSTG-NIAVAGA--------DR--TVTIYDPRR----WSALSRW-VHCSKYEITGLSFSSIDSN- 297 (369)
Q Consensus 241 ------~~~v~~v~~sp~g-~lasgs~--------D~--~v~vwD~~~----~~~~~~~-~~h~~~~v~~l~~sp~d~~- 297 (369)
...+.+++++-.| +++|.-. || .+|+|-... +.+...+ ..| ...+....|.+....
T Consensus 392 ~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH-~~~~vat~~~~~~rs~ 470 (792)
T KOG1963|consen 392 DGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPH-GNAFVATIFLNPTRSV 470 (792)
T ss_pred CCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCC-CceeEEEEEecCcccc
Confidence 1357788888889 8888632 33 467885432 3333333 356 665555555442444
Q ss_pred EEEEEECCCeEEEEECcCCc----------eeEEEEcCCCeeeeeEc---CCCCEEEEEeCCCcEEEEECCCC
Q 017601 298 YIYVQGVDYEVFCGQWRESS----------KVFAFRGDSNWLGFSKC---SNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 298 ~l~s~s~D~~i~vwd~~~~~----------~~~~~~g~~~~~~~~~~---~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.++++|.|+.+++|-+...+ |...-.=|. ..+..+ .||. +++.+.|++|.+||..+.
T Consensus 471 ~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k--~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 471 RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK--TPITALCFSQDGS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred eeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc--CcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence 89999999999999884321 111111122 222222 2774 556678899999999874
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-08 Score=98.64 Aligned_cols=211 Identities=12% Similarity=0.031 Sum_probs=125.0
Q ss_pred cEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe--cccceEEEEeCCcc-eEEEEeee-CCcc
Q 017601 119 HLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR--SFSKSIDVYDQDIH-LRTLRTLW-YPSS 194 (369)
Q Consensus 119 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~--s~d~~i~lwd~~~~-~~~~~~~~-~~~~ 194 (369)
+||++|.+.... ..+... ...+...+|+|++.. ++..+ ..+..|.+||.... .+.+.... +...
T Consensus 180 ~l~~~d~dg~~~------~~lt~~-----~~~~~~p~wSPDG~~-la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~ 247 (429)
T PRK03629 180 ELRVSDYDGYNQ------FVVHRS-----PQPLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAVRQVASFPRHNGA 247 (429)
T ss_pred eEEEEcCCCCCC------EEeecC-----CCceeeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCC
Confidence 788888874421 111111 112447999996654 44431 22457888887532 22222221 1122
Q ss_pred eeeeccCCCCCCCCcEEEEE-cCC--eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC-CcEEEE--
Q 017601 195 LNFVQNLSPVNGGPNMLAVT-EGC--QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD-RTVTIY-- 267 (369)
Q Consensus 195 v~~~~~~~~~~~~~~lla~s-~d~--~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D-~~v~vw-- 267 (369)
. .++||+..|+.+. .++ .|.+||+.++ ... .+... ...+...+|+||| .|+..+.+ +...||
T Consensus 248 ~------~~SPDG~~La~~~~~~g~~~I~~~d~~tg---~~~-~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 248 P------AFSPDGSKLAFALSKTGSLNLYVMDLASG---QIR-QVTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred e------EECCCCCEEEEEEcCCCCcEEEEEECCCC---CEE-EccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence 2 2346777777653 344 5889999876 433 33322 2567789999999 77666653 444555
Q ss_pred eCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC---CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEe
Q 017601 268 DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD---YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWS 344 (369)
Q Consensus 268 D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D---~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs 344 (369)
|+.+++. ..+..+ ........|+| ||++|+..+.+ ..|.+||+.+++.......... .....++||.+|+..+
T Consensus 317 d~~~g~~-~~lt~~-~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~-~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 317 NINGGAP-QRITWE-GSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLD-ETPSIAPNGTMVIYSS 392 (429)
T ss_pred ECCCCCe-EEeecC-CCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCC-CCceECCCCCEEEEEE
Confidence 6665543 333333 34566789999 99998876654 3688999988764332222210 2334567999999988
Q ss_pred CCCc---EEEEECCC
Q 017601 345 DSGS---IFVADVVA 356 (369)
Q Consensus 345 ~dg~---I~iWd~~~ 356 (369)
.++. +++|++..
T Consensus 393 ~~~~~~~l~~~~~~G 407 (429)
T PRK03629 393 SQGMGSVLNLVSTDG 407 (429)
T ss_pred cCCCceEEEEEECCC
Confidence 8865 67777743
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.6e-11 Score=110.32 Aligned_cols=123 Identities=12% Similarity=0.148 Sum_probs=99.0
Q ss_pred eeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCC-CCCEEEEEECCCeEEE
Q 017601 234 HRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSI-DSNYIYVQGVDYEVFC 310 (369)
Q Consensus 234 ~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~-d~~~l~s~s~D~~i~v 310 (369)
+.+.+| .+-|+|++|+.+| +|++||.|-.+.|||.-..++++.+. || ...|.++.|-|. +.++++||+.|..|++
T Consensus 44 ~eL~GH-~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgH-taNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGH-TGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGH-TANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccc-cceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccc-ccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 456777 7999999999999 99999999999999998888887664 88 999999999985 3457889999999999
Q ss_pred EECcC----------CceeEEEEcCCC-eeeeeEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 017601 311 GQWRE----------SSKVFAFRGDSN-WLGFSKCSNR-DVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 311 wd~~~----------~~~~~~~~g~~~-~~~~~~~~d~-~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+|+.. .+..+.+..|.+ ...+..++++ ..+.++++||+|+-+|++...
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 99985 234455555551 1233335555 789999999999999998754
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-09 Score=101.14 Aligned_cols=199 Identities=17% Similarity=0.166 Sum_probs=134.0
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCCcceEEE-----------Ee----------eeCCcceeeecc----------
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTL-----------RT----------LWYPSSLNFVQN---------- 200 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~-----------~~----------~~~~~~v~~~~~---------- 200 (369)
+.+..+|++..++|+| -+--.|++||+....-.+ .. ++....|.|.+-
T Consensus 55 t~ik~s~DGqY~lAtG-~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP 133 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATG-TYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIP 133 (703)
T ss_pred ceeEecCCCcEEEEec-ccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecC
Confidence 3688999888888887 888999999974321111 00 001111111110
Q ss_pred -----CCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCcee
Q 017601 201 -----LSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSA 274 (369)
Q Consensus 201 -----~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~ 274 (369)
..+..-..-|+.++....|.=+++..| .-+..+... .+.+++|..++.. +|++|+.||.|..||.|..+.
T Consensus 134 ~~GRDm~y~~~scDly~~gsg~evYRlNLEqG---rfL~P~~~~-~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 134 KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG---RFLNPFETD-SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred cCCccccccCCCccEEEeecCcceEEEEcccc---ccccccccc-cccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 001111224555555567777888887 777777655 5889999999988 999999999999999998766
Q ss_pred eeecc------ccccC-----ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEc---C--CCC
Q 017601 275 LSRWV------HCSKY-----EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKC---S--NRD 338 (369)
Q Consensus 275 ~~~~~------~h~~~-----~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~---~--d~~ 338 (369)
+.++. .| .+ .|+++.|+. +|-.++.|..+|.|.|+|++..+++..- .|..-..+... . ++.
T Consensus 210 v~~l~~~~~v~s~-pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 210 VGTLDAASSVNSH-PGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred heeeecccccCCC-ccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCc
Confidence 65544 22 23 499999998 8999999999999999999997765543 23311333332 1 345
Q ss_pred EEEEEeCCCcEEEEECCCCcc
Q 017601 339 VLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 339 ~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.|+|. ....++|||-.+|+.
T Consensus 287 ~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred eEEec-chHHhhhcccccCCc
Confidence 55544 567899999988873
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-09 Score=96.83 Aligned_cols=189 Identities=15% Similarity=0.167 Sum_probs=131.0
Q ss_pred eeEEEEecccceEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEE-EEcC--CeEEEEeCCcccCCceeee
Q 017601 162 SMAAVARSFSKSIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLA-VTEG--CQLTIWDLRMKENGGCLHR 235 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla-~s~d--~~v~iwD~~~~~~~~~~~~ 235 (369)
..+.+| -.+|.+.+|... .+...+........+..+.-.+. ...+++ ++.. ..++|||+.+. +.+..
T Consensus 116 g~Litc-~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~---~p~Iva~GGke~~n~lkiwdle~~---~qiw~ 188 (412)
T KOG3881|consen 116 GTLITC-VSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDT---DPYIVATGGKENINELKIWDLEQS---KQIWS 188 (412)
T ss_pred CEEEEE-ecCCcEEEEeccCCccccccceeeecCCceeeeccCCC---CCceEecCchhcccceeeeecccc---eeeee
Confidence 355666 578999999653 11122222222222333332222 234554 7777 78999999865 33322
Q ss_pred eec-cC-------CCcEEEEEECCC--C-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEE
Q 017601 236 ICG-SV-------GDILYAVCSSST--G-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 236 ~~~-~~-------~~~v~~v~~sp~--g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
-+. .+ .-.++++.|-+. . .||++..-+.|++||++. .+++.++.-- +.+++++..-| +++.++++-
T Consensus 189 aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p-~gn~Iy~gn 266 (412)
T KOG3881|consen 189 AKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTP-SGNFIYTGN 266 (412)
T ss_pred ccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-cCcceeeeecC-CCcEEEEec
Confidence 111 00 135677889877 5 999999999999999998 4667777766 78999999999 999999999
Q ss_pred CCCeEEEEECcCCceeEE-EEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 304 VDYEVFCGQWRESSKVFA-FRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 304 ~D~~i~vwd~~~~~~~~~-~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.-+.+..||++.++.+.. |.|-.. ..++...+...+|++++-|+.|+|+|+++.+.
T Consensus 267 ~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 267 TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 999999999999887766 554331 12333345778999999999999999999653
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.7e-10 Score=102.38 Aligned_cols=271 Identities=12% Similarity=0.102 Sum_probs=174.1
Q ss_pred ccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCee
Q 017601 73 LIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWS 152 (369)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (369)
.+.+++....+..-...+|...|.-..|.|.. +...+++.+.+|.+++-.+..... ... ...+.+|.. .+.
T Consensus 166 vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s--~d~ti~~~s~dgqvr~s~i~~t~~-~e~-t~rl~~h~g-----~vh 236 (559)
T KOG1334|consen 166 VVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS--GDRTIVTSSRDGQVRVSEILETGY-VEN-TKRLAPHEG-----PVH 236 (559)
T ss_pred EEeehhhccCcccccccccccchhhhhccCCC--CCcCceeccccCceeeeeeccccc-eec-ceecccccC-----ccc
Confidence 34556655543333346899888888898874 346788888999999876653311 001 122333333 333
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcc--eEEEEeee-CCc---ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIH--LRTLRTLW-YPS---SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM 226 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~--~~~~~~~~-~~~---~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~ 226 (369)
-++.-|..+..|.++ +.|+.+.-+|+... ...+.... +.. .+..+...|.++ ..+++++.|..+++||.|.
T Consensus 237 klav~p~sp~~f~S~-geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt--~~faVgG~dqf~RvYD~R~ 313 (559)
T KOG1334|consen 237 KLAVEPDSPKPFLSC-GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT--NEFAVGGSDQFARVYDQRR 313 (559)
T ss_pred eeeecCCCCCccccc-ccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc--cccccCChhhhhhhhcccc
Confidence 688889888889998 89999998887421 11221211 111 223333333222 4677788899999999985
Q ss_pred ccC---CceeeeeeccC-----CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC--c----------eeeee-ccccccC
Q 017601 227 KEN---GGCLHRICGSV-----GDILYAVCSSSTG-NIAVAGADRTVTIYDPRR--W----------SALSR-WVHCSKY 284 (369)
Q Consensus 227 ~~~---~~~~~~~~~~~-----~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~--~----------~~~~~-~~~h~~~ 284 (369)
-.. ...+..+..++ ...|++++|+.++ -|.+.-.|--|+++...- + ..+.. ++|| ..
T Consensus 314 ~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGH-rN 392 (559)
T KOG1334|consen 314 IDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGH-RN 392 (559)
T ss_pred hhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccc-cc
Confidence 321 12233332211 3579999999888 555556677899995322 3 22333 7888 53
Q ss_pred --ceEEEEE-cCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCee-eeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 285 --EITGLSF-SSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 285 --~v~~l~~-sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.|-.+.| -| ...+++|||.=|.|.||+-.+++.++.+.|..... ++..-|--.+|||.+-|..|+||-..+.
T Consensus 393 ~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 393 SRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 4777776 56 78999999999999999999999999888876211 1111234568999999999999976443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8e-09 Score=89.87 Aligned_cols=250 Identities=12% Similarity=0.039 Sum_probs=151.6
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCC-CCCCCCeeEEEECCCCceeEEEEecc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDC-GVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
+..+..+.|...+.++...++-++..|+|.++..+.... +..+.+-+. .....--.++.|++.+. .++++ -.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s-----s~~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs-~s 141 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES-----SVHLRGLSSKKISVVEALSLDISTSGT-KIFVS-DS 141 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeecccee-----eeeecccchhhhhheeeeEEEeeccCc-eEEEE-cC
Confidence 456677777765444456888899999999988764311 111222111 00001123688888554 45665 56
Q ss_pred cceEE-EEeCCcceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee-eeccCCCcEEEE
Q 017601 171 SKSID-VYDQDIHLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR-ICGSVGDILYAV 247 (369)
Q Consensus 171 d~~i~-lwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~-~~~~~~~~v~~v 247 (369)
++.+. ++.....+.+.+..+ |...+-...+... +.+.+.++++|+.+..||+|.+. +.+.+ .+-| ...|.++
T Consensus 142 ~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~--~pnlvytGgDD~~l~~~D~R~p~--~~i~~n~kvH-~~GV~SI 216 (339)
T KOG0280|consen 142 RGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK--EPNLVYTGGDDGSLSCWDIRIPK--TFIWHNSKVH-TSGVVSI 216 (339)
T ss_pred CCcEEEEecceeeeeecccccccceeeeeeecccC--CCceEEecCCCceEEEEEecCCc--ceeeecceee-ecceEEE
Confidence 77777 443334444333222 1111111111111 22577789999999999999552 34433 2222 4778888
Q ss_pred EECCCC--cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC--c---ee
Q 017601 248 CSSSTG--NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES--S---KV 319 (369)
Q Consensus 248 ~~sp~g--~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~--~---~~ 319 (369)
.-+|.- .|++|+.|-.|++||.|+ ++++..-. ..+.|..+..+|.....|+.+.+-+-.+|-+...+ + ..
T Consensus 217 ~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~ 294 (339)
T KOG0280|consen 217 YSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVL 294 (339)
T ss_pred ecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheee
Confidence 777654 999999999999999997 77776544 25789999999965556666777777888888763 3 33
Q ss_pred EEEEcCCCeeeeeEcC----CCCEEEEEe-CCCcEE-EEECCCCc
Q 017601 320 FAFRGDSNWLGFSKCS----NRDVLGGWS-DSGSIF-VADVVAKE 358 (369)
Q Consensus 320 ~~~~g~~~~~~~~~~~----d~~~l~sgs-~dg~I~-iWd~~~~~ 358 (369)
..++.|. ++..-. ...+||++| .|+.++ +|-..+++
T Consensus 295 ~s~~~hd---Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 295 PSDKIHD---SLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ecccccc---ceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 4445554 222211 124578765 577755 88666654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-08 Score=99.42 Aligned_cols=249 Identities=15% Similarity=0.087 Sum_probs=153.3
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC---Ccee
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS---QWSM 163 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~---~~~~ 163 (369)
.+.+|...+.++.+.|.. .....+.+.+.+|.|.+||...+. .+. .+....+ +-.+.+.|. .+..
T Consensus 52 ~l~~~~a~l~s~~~~~~~-~~~~~~~~~sl~G~I~vwd~~~~~-Llk--t~~~~~~--------v~~~~~~~~~a~~s~~ 119 (792)
T KOG1963|consen 52 SLEDHTAPLTSVIVLPSS-ENANYLIVCSLDGTIRVWDWSDGE-LLK--TFDNNLP--------VHALVYKPAQADISAN 119 (792)
T ss_pred hcccccCccceeeecCCC-ccceEEEEEecCccEEEecCCCcE-EEE--EEecCCc--------eeEEEechhHhCccce
Confidence 478999999999998863 222556688899999999987541 110 1111000 001111110 0001
Q ss_pred EEEEecccceEEE---EeCCcceEEEEe-------------eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 164 AAVARSFSKSIDV---YDQDIHLRTLRT-------------LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 164 ~a~~~s~d~~i~l---wd~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
+..+ ..|..+-. .+.....+.+-. ...+..+.+.. ++.+.....+..+.+|+....
T Consensus 120 ~~~s-~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-------~ge~~~i~~~~~~~~~~v~~~ 191 (792)
T KOG1963|consen 120 VYVS-VEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-------SGEFKGIVHMCKIHIYFVPKH 191 (792)
T ss_pred eEee-cccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-------CceEEEEEEeeeEEEEEeccc
Confidence 1111 12211111 111111111111 11133343333 456777777888999998875
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEe-CC-C--ceeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYD-PR-R--WSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD-~~-~--~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
.+....+....++...+++.++||++ ++|+|..||.|.+|. .. . ....+.+.-| ..+|++++|++ +|.+|+||
T Consensus 192 ~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH-~~~V~~L~fS~-~G~~LlSG 269 (792)
T KOG1963|consen 192 TKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH-HDEVNSLSFSS-DGAYLLSG 269 (792)
T ss_pred ceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec-ccccceeEEec-CCceEeec
Confidence 21111122221114568999999999 999999999999995 32 1 1223456667 79999999999 99999999
Q ss_pred ECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 303 GVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
|..+.+-+|.+.+++..+.-+-......+..++|+++.+...+|+.|.+-.+.+-
T Consensus 270 G~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 270 GREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred ccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 9999999999999774443333333356666889999999999999999877554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.2e-08 Score=94.39 Aligned_cols=194 Identities=12% Similarity=0.091 Sum_probs=115.9
Q ss_pred eeEEEECCCCceeEEEEec--ccceEEEEeCCcc-eEEEEeeeCCcceeeeccCCCCCCCCcEEE-EEcCC--eEEEEeC
Q 017601 151 WSGLCFSPSQWSMAAVARS--FSKSIDVYDQDIH-LRTLRTLWYPSSLNFVQNLSPVNGGPNMLA-VTEGC--QLTIWDL 224 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s--~d~~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~lla-~s~d~--~v~iwD~ 224 (369)
+...+|+|++. .|+..+. .+..|.+||+... .+.+.. .+..+.. ..++||+..|+. .+.++ .|.+||+
T Consensus 204 v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l~~--~~g~~~~---~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 204 VLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELVGN--FPGMTFA---PRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred eEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEeec--CCCcccC---cEECCCCCEEEEEEecCCCceEEEEEC
Confidence 45799999655 5555422 2468999998532 222221 1211111 223467777764 44455 4777788
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CC--cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DR--TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~--~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
.++ . +..+..+ .......+|+||| .|+..+. ++ .|.+||+..++. ..+..+ ...+....||| ||+.|+
T Consensus 278 ~~~---~-~~~Lt~~-~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~-~~~~~~~~~Sp-dG~~ia 349 (435)
T PRK05137 278 RSG---T-TTRLTDS-PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFG-GGRYSTPVWSP-RGDLIA 349 (435)
T ss_pred CCC---c-eEEccCC-CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecC-CCcccCeEECC-CCCEEE
Confidence 776 3 3444433 3456778999999 7776653 33 578888766543 334434 45567789999 999998
Q ss_pred EEECC---CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCC------CcEEEEECCCCcc
Q 017601 301 VQGVD---YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDS------GSIFVADVVAKEN 359 (369)
Q Consensus 301 s~s~D---~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~d------g~I~iWd~~~~~~ 359 (369)
..+.+ ..|.+||+..+.. ..+...........++||+.|+..+.+ ..+++.|+..++.
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 87654 3688889865443 333211111334457799887655543 2578888866543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-09 Score=107.44 Aligned_cols=190 Identities=15% Similarity=0.088 Sum_probs=131.1
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEe
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRT 188 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~ 188 (369)
..++.+.++-.+++||...+.. -..++......-- ....+-+++ ++-.++++ +.-+.|-+|+........+.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~-----~~~i~~~er~~l~-~~~~~g~s~-~~~~i~~g-sv~~~iivW~~~~dn~p~~l 171 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSV-----LSKIQSDERCTLY-SSLIIGDSA-EELYIASG-SVFGEIIVWKPHEDNKPIRL 171 (967)
T ss_pred ceEEEEEcCceEEEEecccCce-----ehhcCCCceEEEE-eEEEEeccC-cEEEEEec-cccccEEEEeccccCCccee
Confidence 5667677777888888775421 0011110000000 011244555 56677777 78899999986522222233
Q ss_pred eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEe
Q 017601 189 LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYD 268 (369)
Q Consensus 189 ~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD 268 (369)
..|...+-.+. ++.|+.+++++|+|.++++|++.+.+-.. ..-|.| ...|..++|.|+ .+++++.|-+.++|+
T Consensus 172 ~GHeG~iF~i~---~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgH--saRvw~~~~~~n-~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 172 KGHEGSIFSIV---TSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGH--SARVWACCFLPN-RIITVGEDCTCRVWG 244 (967)
T ss_pred cccCCceEEEE---EccCCcEEEEEecCcceeeeecccccccC-cccccc--cceeEEEEeccc-eeEEeccceEEEEEe
Confidence 44444443333 23468899999999999999999884222 122444 489999999998 999999999999997
Q ss_pred CCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 269 PRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 269 ~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
. ++..+..+.+|....|..++..+ +...+++++.|+.+++||+..
T Consensus 245 ~-~~~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 245 V-NGTQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c-ccceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 4 45666689999777899999999 888999999999999999865
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-10 Score=106.03 Aligned_cols=189 Identities=7% Similarity=-0.073 Sum_probs=149.8
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG 230 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~ 230 (369)
.+.++.+ +..++.+ +.-|.+..+|.. .....+........+.|++ ...++|++....+.|||-. |
T Consensus 134 ~~~ytrn-Grhlllg-GrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-------neq~~AVAQK~y~yvYD~~-G--- 200 (545)
T KOG1272|consen 134 HLDYTRN-GRHLLLG-GRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-------NEQFFAVAQKKYVYVYDNN-G--- 200 (545)
T ss_pred eeeecCC-ccEEEec-CCccceeeeecccceeeeeeehhhhhhhhhhhc-------chHHHHhhhhceEEEecCC-C---
Confidence 4788774 4556666 678899998863 3333444444556677776 3588888888999999954 4
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
..++.+..+ ..|..+.|-|.- +|++++..|.++--|+.+|+.+..+..- .+.+..+.-+| -...+-.|...|+|.
T Consensus 201 tElHClk~~--~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-~G~~~vm~qNP-~NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 201 TELHCLKRH--IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-AGRTDVMKQNP-YNAVIHLGHSNGTVS 276 (545)
T ss_pred cEEeehhhc--CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-CCccchhhcCC-ccceEEEcCCCceEE
Confidence 677777777 889999999999 9999999999999999999999998877 78899999999 667888899999999
Q ss_pred EEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 310 CGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 310 vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+|.....+.+..+-.|..- .++..-++|.++++.+.|+.|+|||+++-.
T Consensus 277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 9999887776666555511 234445599999999999999999998765
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-08 Score=96.14 Aligned_cols=192 Identities=14% Similarity=-0.001 Sum_probs=114.2
Q ss_pred eeEEEECCCCceeEEEEecc--cceEEEEeCCcc-eEEEEeeeCCcceeeeccCCCCCCCCcEEE-EEcCC--eEEEEeC
Q 017601 151 WSGLCFSPSQWSMAAVARSF--SKSIDVYDQDIH-LRTLRTLWYPSSLNFVQNLSPVNGGPNMLA-VTEGC--QLTIWDL 224 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~--d~~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~lla-~s~d~--~v~iwD~ 224 (369)
+.+.+|+|++. .++..+.. ...|.+||.... .+.+... +.... ...++||+..++. .+.++ .|.+||+
T Consensus 206 v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--~g~~~---~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 206 ILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVASF--RGING---APSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEeccC--CCCcc---CceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 44689999655 55555222 346889997532 2222211 11111 1224467776654 34444 6999999
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CCc--EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DRT--VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~~--v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
.++ .. ..+..+ .......+|+||| .|+..+. ++. |.++|+.+++.. .+..+ .......+||| ||++|+
T Consensus 280 ~~g---~~-~~lt~~-~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~-g~~~~~~~~Sp-DG~~Ia 351 (433)
T PRK04922 280 GSR---QL-TRLTNH-FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQ-GNYNARASVSP-DGKKIA 351 (433)
T ss_pred CCC---Ce-EECccC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecC-CCCccCEEECC-CCCEEE
Confidence 876 33 334333 2445678999999 7776653 444 666677665532 22222 33455789999 999988
Q ss_pred EEECCC---eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCC---CcEEEEECCCC
Q 017601 301 VQGVDY---EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDS---GSIFVADVVAK 357 (369)
Q Consensus 301 s~s~D~---~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~d---g~I~iWd~~~~ 357 (369)
..+.++ .|.+||+.+++......+... .....++||++|+..+.+ +.|+++++..+
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~-~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVRTLTPGSLD-ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEECCCCceeEEEEECCCCCeEECCCCCCC-CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 765443 699999988765433222211 233447799987766653 46888888544
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-09 Score=93.79 Aligned_cols=183 Identities=14% Similarity=0.209 Sum_probs=121.8
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
-.++-++|++- ...+|.+..+..|++++-... ... .++ ......+++++|.|.....++++ . ..
T Consensus 99 ~dlr~~aWhqH----~~~fava~nddvVriy~ksst---~pt---~Lk----s~sQrnvtclawRPlsaselavg-C-r~ 162 (445)
T KOG2139|consen 99 IDLRGVAWHQH----IIAFAVATNDDVVRIYDKSST---CPT---KLK----SVSQRNVTCLAWRPLSASELAVG-C-RA 162 (445)
T ss_pred cceeeEeechh----hhhhhhhccCcEEEEeccCCC---CCc---eec----chhhcceeEEEeccCCcceeeee-e-cc
Confidence 44678888773 456677777778888775421 111 011 11223467999999888888887 3 45
Q ss_pred eEEEEeCCcc---eEE--------EEeeeCC--cceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeee-e
Q 017601 173 SIDVYDQDIH---LRT--------LRTLWYP--SSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRI-C 237 (369)
Q Consensus 173 ~i~lwd~~~~---~~~--------~~~~~~~--~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~-~ 237 (369)
-|+||..+.. .+. .+.++++ ..+.++++ ++|+..+++++ .|..|+|||..++ ..+.-. .
T Consensus 163 gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqw---n~dgt~l~tAS~gsssi~iWdpdtg---~~~pL~~~ 236 (445)
T KOG2139|consen 163 GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQW---NEDGTILVTASFGSSSIMIWDPDTG---QKIPLIPK 236 (445)
T ss_pred eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEE---cCCCCEEeecccCcceEEEEcCCCC---Cccccccc
Confidence 6999965421 111 1112222 45566665 35677788777 4789999999988 333222 2
Q ss_pred ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEe-CCCceeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 238 GSVGDILYAVCSSSTG-NIAVAGADRTVTIYD-PRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 238 ~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD-~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
+. +.+.-+.||||| +|.++.-|+..++|+ -+++.......+. +.|....|+| +|++|+-.
T Consensus 237 gl--gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs--grvqtacWsp-cGsfLLf~ 298 (445)
T KOG2139|consen 237 GL--GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS--GRVQTACWSP-CGSFLLFA 298 (445)
T ss_pred CC--CceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC--CceeeeeecC-CCCEEEEE
Confidence 33 778889999999 999999999999995 4446655555554 5899999999 98876544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.8e-08 Score=94.33 Aligned_cols=206 Identities=12% Similarity=0.033 Sum_probs=118.1
Q ss_pred CccceeeEEEEeecCCCCceEEEEE-e--cCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSV-D--SYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~-d--~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+...+.+.+||||+ ..++-. . ....+++|++.++.. ..+.... +.....+|+|++..++.+
T Consensus 196 ~~~~~~~~p~wSPDG----~~la~~s~~~g~~~i~i~dl~~G~~------~~l~~~~-----~~~~~~~~SPDG~~La~~ 260 (429)
T PRK03629 196 RSPQPLMSPAWSPDG----SKLAYVTFESGRSALVIQTLANGAV------RQVASFP-----RHNGAPAFSPDGSKLAFA 260 (429)
T ss_pred cCCCceeeeEEcCCC----CEEEEEEecCCCcEEEEEECCCCCe------EEccCCC-----CCcCCeEECCCCCEEEEE
Confidence 455678899999985 344432 2 234788998865421 1111110 112258999966554444
Q ss_pred Eecccc--eEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcC-CeEEEE--eCCcccCCceeeeeeccC
Q 017601 167 ARSFSK--SIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEG-CQLTIW--DLRMKENGGCLHRICGSV 240 (369)
Q Consensus 167 ~~s~d~--~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d-~~v~iw--D~~~~~~~~~~~~~~~~~ 240 (369)
. +.++ .|.+||... ..+.+. ......... .++||+..|+.++++ +...|| |+.++ . ...+...
T Consensus 261 ~-~~~g~~~I~~~d~~tg~~~~lt--~~~~~~~~~---~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g---~-~~~lt~~- 329 (429)
T PRK03629 261 L-SKTGSLNLYVMDLASGQIRQVT--DGRSNNTEP---TWFPDSQNLAYTSDQAGRPQVYKVNINGG---A-PQRITWE- 329 (429)
T ss_pred E-cCCCCcEEEEEECCCCCEEEcc--CCCCCcCce---EECCCCCEEEEEeCCCCCceEEEEECCCC---C-eEEeecC-
Confidence 3 4444 588888753 222221 112122222 234677778777764 444555 66554 2 3333332
Q ss_pred CCcEEEEEECCCC-cEEEEeCC---CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe---EEEEEC
Q 017601 241 GDILYAVCSSSTG-NIAVAGAD---RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE---VFCGQW 313 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasgs~D---~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~---i~vwd~ 313 (369)
.....+.+|+||| .|+..+.+ ..|.+||+.+++.. .+... .......|+| ||+.|+.++.|+. +.++++
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECC-CCCEEEEEEcCCCceEEEEEEC
Confidence 2456678999999 77665443 35888999877543 33322 2234678999 9999999998874 667776
Q ss_pred cCCceeEEEEcCC
Q 017601 314 RESSKVFAFRGDS 326 (369)
Q Consensus 314 ~~~~~~~~~~g~~ 326 (369)
. ++....+.+|.
T Consensus 406 ~-G~~~~~l~~~~ 417 (429)
T PRK03629 406 D-GRFKARLPATD 417 (429)
T ss_pred C-CCCeEECccCC
Confidence 4 44445555543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.6e-09 Score=89.99 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=103.5
Q ss_pred EEcCCeEEEEeCCcccCCceeeeeeccC--CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCcee--eeeccccccCceE
Q 017601 213 VTEGCQLTIWDLRMKENGGCLHRICGSV--GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSA--LSRWVHCSKYEIT 287 (369)
Q Consensus 213 ~s~d~~v~iwD~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~--~~~~~~h~~~~v~ 287 (369)
+-.+|.|.+|.....+....+..+.... ...-.++.|++.+ .++++-.+|.+.+-+...... +++++.| +.++.
T Consensus 91 a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H-e~E~W 169 (339)
T KOG0280|consen 91 AHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVH-EFEAW 169 (339)
T ss_pred ccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccc-ceeee
Confidence 4457889998765432111122222110 1123567899999 999999999999666555444 4589999 99999
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECc-CCceeEE-EEcCCCeeeeeE---cC-CCCEEEEEeCCCcEEEEECCCCcchh
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWR-ESSKVFA-FRGDSNWLGFSK---CS-NRDVLGGWSDSGSIFVADVVAKENEI 361 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~-~~~~~~~-~~g~~~~~~~~~---~~-d~~~l~sgs~dg~I~iWd~~~~~~~~ 361 (369)
...|+..+++++.+||.|+.+..||++ +++.+.. -+-|. .++.. ++ .+.+|++|+.|-.|++||.++-..++
T Consensus 170 ta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~--~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 170 TAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT--SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred eeecccCCCceEEecCCCceEEEEEecCCcceeeecceeee--cceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence 999999899999999999999999999 4444443 23454 44443 33 78899999999999999998644333
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.6e-08 Score=92.45 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=131.8
Q ss_pred ceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCC---Cee-EEEECC-------------CCceeEEEEecc
Q 017601 108 YMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEG---SWS-GLCFSP-------------SQWSMAAVARSF 170 (369)
Q Consensus 108 ~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~l~~~p-------------~~~~~~a~~~s~ 170 (369)
...+|..+.+|.+++|+...+.. ...+.|.....+.+ -|. .+..+| .+..+++-+ -.
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~-----~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg-t~ 78 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQL-----QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG-TP 78 (541)
T ss_pred hheEeecCCCCeEEEEEccCcee-----eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee-cC
Confidence 46788889999999999876521 11111111100000 010 011122 133456666 78
Q ss_pred cceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 171 SKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 171 d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
.|.|.+|+.. .....+.+..|...++.+.+. .+-+.|-+++.|..+-.|+.+.. ..+..+... ...+.+++
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~---~~~~ciyS~~ad~~v~~~~~~~~---~~~~~~~~~-~~~~~sl~ 151 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA---QRLGCIYSVGADLKVVYILEKEK---VIIRIWKEQ-KPLVSSLC 151 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecc---cccCceEecCCceeEEEEecccc---eeeeeeccC-CCccceEE
Confidence 8999999874 334444445566666666532 23457888999999999999987 666666655 57889999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCC-----CCEEEE-EECCCeEEEEECcC
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSID-----SNYIYV-QGVDYEVFCGQWRE 315 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d-----~~~l~s-~s~D~~i~vwd~~~ 315 (369)
.+||| .+++|+ +.|++||+.+++.+.+|.|| .++|.++.|-- + |.++++ ...+..+.+|-+..
T Consensus 152 is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh-~s~v~t~~f~~-~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 152 ISPDGKILLTAS--RQIKVLDIETKEVVITFTGH-GSPVRTLSFTT-LIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EcCCCCEEEecc--ceEEEEEccCceEEEEecCC-CcceEEEEEEE-eccccccceeeeccccccceeEEEEEc
Confidence 99999 888886 68999999999999999999 99999999987 5 566655 45567788887654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-08 Score=97.32 Aligned_cols=197 Identities=17% Similarity=0.104 Sum_probs=113.0
Q ss_pred CCccceeeEEEEeecCCCCceEEEEE-ec--CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSV-DS--YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~-d~--~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+...+.+.+|+||+ ..++.. +. ...|++||+.++.. ..+... .+.....+|+|++..++.
T Consensus 192 ~~~~~~v~~p~wSPDG----~~la~~s~~~~~~~I~~~dl~~g~~------~~l~~~-----~g~~~~~~~SPDG~~la~ 256 (427)
T PRK02889 192 LSSPEPIISPAWSPDG----TKLAYVSFESKKPVVYVHDLATGRR------RVVANF-----KGSNSAPAWSPDGRTLAV 256 (427)
T ss_pred ccCCCCcccceEcCCC----CEEEEEEccCCCcEEEEEECCCCCE------EEeecC-----CCCccceEECCCCCEEEE
Confidence 4567788999999985 344433 22 24699999875521 111111 111236899996655444
Q ss_pred EEecccceEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCceeeeeeccCC
Q 017601 166 VARSFSKSIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHRICGSVG 241 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~~~~~~~ 241 (369)
+. +.++..+||..+ ...+.+.. +....... .++||+..++.+++ ++...||.+.... .....+... +
T Consensus 257 ~~-~~~g~~~Iy~~d~~~~~~~~lt~--~~~~~~~~---~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--g~~~~lt~~-g 327 (427)
T PRK02889 257 AL-SRDGNSQIYTVNADGSGLRRLTQ--SSGIDTEP---FFSPDGRSIYFTSDRGGAPQIYRMPASG--GAAQRVTFT-G 327 (427)
T ss_pred EE-ccCCCceEEEEECCCCCcEECCC--CCCCCcCe---EEcCCCCEEEEEecCCCCcEEEEEECCC--CceEEEecC-C
Confidence 44 778887777542 22222211 11111111 23467777877765 4666777654221 122233222 2
Q ss_pred CcEEEEEECCCC-cEEEEeCCC---cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCC---eEEEEEC
Q 017601 242 DILYAVCSSSTG-NIAVAGADR---TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY---EVFCGQW 313 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~---~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~---~i~vwd~ 313 (369)
......+|||+| +|+..+.++ .|.+||+.+++.. .+... .......|+| |++.|+..+.++ .+.+-++
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~--~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT--TRDESPSFAP-NGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC--CCccCceECC-CCCEEEEEEecCCCEEEEEEEC
Confidence 334467899999 777666544 6999999887644 33322 2346789999 999988877654 2444455
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.1e-07 Score=96.52 Aligned_cols=196 Identities=12% Similarity=0.038 Sum_probs=124.2
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCC-cceEEEEe------------------eeCCcceeeeccCCCCC-CCCcEE
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRT------------------LWYPSSLNFVQNLSPVN-GGPNML 211 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~------------------~~~~~~v~~~~~~~~~~-~~~~ll 211 (369)
.++++++++. .+.++-.....|+.+|.. ..+.++.. ...|..+.+. + ++..++
T Consensus 627 ~GIavd~~gn-~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d------p~~g~LyV 699 (1057)
T PLN02919 627 QGLAYNAKKN-LLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE------PVNEKVYI 699 (1057)
T ss_pred cEEEEeCCCC-EEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe------cCCCeEEE
Confidence 3799998544 444443667889999864 33433321 1123333332 3 234556
Q ss_pred EEEcCCeEEEEeCCcccCCceeeeeecc--------------CCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceee
Q 017601 212 AVTEGCQLTIWDLRMKENGGCLHRICGS--------------VGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSAL 275 (369)
Q Consensus 212 a~s~d~~v~iwD~~~~~~~~~~~~~~~~--------------~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~ 275 (369)
+.+.+++|++||..++ . +..+.+. .....+.++|+|++ ++++-+.++.|++||+.++...
T Consensus 700 ad~~~~~I~v~d~~~g---~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~ 775 (1057)
T PLN02919 700 AMAGQHQIWEYNISDG---V-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR 775 (1057)
T ss_pred EECCCCeEEEEECCCC---e-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 6677899999998765 2 2222211 01235679999998 4556667899999999875432
Q ss_pred ee-------------cccc-------ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE-cCC--------
Q 017601 276 SR-------------WVHC-------SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR-GDS-------- 326 (369)
Q Consensus 276 ~~-------------~~~h-------~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~-g~~-------- 326 (369)
.. +-.+ .-..-.+++|++ +|.++++-+.+++|++||..++....... |..
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 10 0000 011246899999 99999998999999999998765543321 100
Q ss_pred -----CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 327 -----NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 327 -----~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.-.++...++|+++++-+.++.|++||+.+++.
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 013444456899999999999999999988764
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.6e-08 Score=92.55 Aligned_cols=175 Identities=15% Similarity=0.036 Sum_probs=112.1
Q ss_pred cceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc---CCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 171 SKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE---GCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 171 d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~---d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
...|.++|.+. ..+.+. .+...+.... ++||+..|+.++. +..|.+||+.++ ... .+... .+.+.+
T Consensus 181 ~~~l~~~d~dg~~~~~lt--~~~~~v~~p~---wSpDG~~lay~s~~~g~~~i~~~dl~~g---~~~-~l~~~-~g~~~~ 250 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLT--DGSSLVLTPR---FSPNRQEITYMSYANGRPRVYLLDLETG---QRE-LVGNF-PGMTFA 250 (435)
T ss_pred ceEEEEECCCCCCcEEEe--cCCCCeEeeE---ECCCCCEEEEEEecCCCCEEEEEECCCC---cEE-EeecC-CCcccC
Confidence 34788888653 223332 1222333333 3467778887764 468999999877 332 33322 356778
Q ss_pred EEECCCC-cE-EEEeCCCc--EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC-C--CeEEEEECcCCcee
Q 017601 247 VCSSSTG-NI-AVAGADRT--VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV-D--YEVFCGQWRESSKV 319 (369)
Q Consensus 247 v~~sp~g-~l-asgs~D~~--v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D--~~i~vwd~~~~~~~ 319 (369)
.+|+||| .| ++.+.++. |.+||+.+++. ..+..+ ........|+| ||+.|+..+. + ..|++||+..++..
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~-~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~ 327 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDS-PAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPR 327 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCC-CCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeE
Confidence 8999999 55 45666665 67779887654 456656 66677899999 9999887764 3 36888898776554
Q ss_pred EEEEcCCCeeeeeEcCCCCEEEEEeCC---CcEEEEECCCCc
Q 017601 320 FAFRGDSNWLGFSKCSNRDVLGGWSDS---GSIFVADVVAKE 358 (369)
Q Consensus 320 ~~~~g~~~~~~~~~~~d~~~l~sgs~d---g~I~iWd~~~~~ 358 (369)
....+.........++||+.|+..+.+ ..|.+||+.++.
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 443322212334457899998876654 368888986553
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=93.21 Aligned_cols=180 Identities=16% Similarity=0.153 Sum_probs=116.3
Q ss_pred eeEEEEecccceEEEEeCCcceEEEEeee----CCcceeeeccCCCCCCCCcEEE-----EEcCCeEEEEeCCcccCCce
Q 017601 162 SMAAVARSFSKSIDVYDQDIHLRTLRTLW----YPSSLNFVQNLSPVNGGPNMLA-----VTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~lla-----~s~d~~v~iwD~~~~~~~~~ 232 (369)
..++++ ..|+.+.+++.++..+..+... ......++. .++.+.+ .-.-+..++|+++.. +.
T Consensus 102 t~V~~~-~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~------~~~~i~s~~~g~~n~~d~~~a~~~~p~---~t 171 (319)
T KOG4714|consen 102 NRVCIG-YADGSLAVFSTDKDLALMSRIPSIHSGSASRKICR------HGNSILSGGCGNWNAQDNFYANTLDPI---KT 171 (319)
T ss_pred CceEec-CCCceEEEEechHHHhhhhhcccccccccccceee------cccEEecCCcceEeeccceeeeccccc---cc
Confidence 456666 8999999998875332222111 011111222 1223333 223456788888754 22
Q ss_pred eeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCc-eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 233 LHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRW-SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~-~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
+..-... ...|.++|-+|.. .+++|+.||.+.+||.|+. .+...++.| +.++..+.|+|.++..|.+++.||.+.
T Consensus 172 ~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~~Lft~sedGslw 249 (319)
T KOG4714|consen 172 LIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPEHLFTCSEDGSLW 249 (319)
T ss_pred ccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCchheeEecCCCcEE
Confidence 1111111 2559999999987 8889999999999999995 445678899 999999999999999999999999999
Q ss_pred EEECcCCceeEEE--EcCCCeee--------------------eeEcC-CCCEEEEEeCCCcEEEEE
Q 017601 310 CGQWRESSKVFAF--RGDSNWLG--------------------FSKCS-NRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 310 vwd~~~~~~~~~~--~g~~~~~~--------------------~~~~~-d~~~l~sgs~dg~I~iWd 353 (369)
-||..+.-+.-.. .+++.|.. +.... -|..|++|+.-+.|++.+
T Consensus 250 ~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 250 HWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 9998752111000 12222211 11100 578899999999999875
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.3e-08 Score=94.27 Aligned_cols=174 Identities=17% Similarity=0.101 Sum_probs=110.1
Q ss_pred ceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc---CCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 172 KSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE---GCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 172 ~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~---d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
.+|.+||.+. ..+.+.. +...+... .++||+..|+.++. +..|.+||+.++ ... .+... .+...+.
T Consensus 184 ~~l~i~D~~g~~~~~lt~--~~~~v~~p---~wSpDg~~la~~s~~~~~~~l~~~dl~~g---~~~-~l~~~-~g~~~~~ 253 (433)
T PRK04922 184 YALQVADSDGYNPQTILR--SAEPILSP---AWSPDGKKLAYVSFERGRSAIYVQDLATG---QRE-LVASF-RGINGAP 253 (433)
T ss_pred EEEEEECCCCCCceEeec--CCCccccc---cCCCCCCEEEEEecCCCCcEEEEEECCCC---CEE-EeccC-CCCccCc
Confidence 4688898753 2333322 22222222 24567778887764 347999999876 332 22222 2445578
Q ss_pred EECCCC-cEE-EEeCCC--cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC-CCe--EEEEECcCCceeE
Q 017601 248 CSSSTG-NIA-VAGADR--TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV-DYE--VFCGQWRESSKVF 320 (369)
Q Consensus 248 ~~sp~g-~la-sgs~D~--~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~--i~vwd~~~~~~~~ 320 (369)
+|+||| .|+ +.+.++ .|.+||+.+++. ..+..+ .......+|+| |++.|+..+. ++. |.++|+.+++...
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNH-FGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccC-CCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 999999 554 555555 599999988764 455556 55667899999 9999887764 444 6667776665433
Q ss_pred E-EEcCCCeeeeeEcCCCCEEEEEeCCC---cEEEEECCCCcc
Q 017601 321 A-FRGDSNWLGFSKCSNRDVLGGWSDSG---SIFVADVVAKEN 359 (369)
Q Consensus 321 ~-~~g~~~~~~~~~~~d~~~l~sgs~dg---~I~iWd~~~~~~ 359 (369)
. +.++.. .....++||+.|+..+.++ .|++||+.+++.
T Consensus 331 lt~~g~~~-~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 331 LTFQGNYN-ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred eecCCCCc-cCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 2 333221 2345577999988665443 699999987754
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-08 Score=94.07 Aligned_cols=140 Identities=14% Similarity=0.085 Sum_probs=111.4
Q ss_pred EEEEEcCCeEEEEeCCcccCCceeeeee-ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceE
Q 017601 210 MLAVTEGCQLTIWDLRMKENGGCLHRIC-GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 210 lla~s~d~~v~iwD~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
++-+...|.|.+|++..+ +.-.++. +.+-+.|+++.++.+- .|.+++.|..+..|+......+..+... +..+.
T Consensus 73 lvlgt~~g~v~~ys~~~g---~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~ 148 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGG---EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVS 148 (541)
T ss_pred EEeecCCccEEEEEecCC---eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccc
Confidence 333667899999999887 5555555 2225889999988887 9999999999999999999999999988 89999
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeee-eeE--cC---CCCE-EEEEeCCCcEEEEECCC
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLG-FSK--CS---NRDV-LGGWSDSGSIFVADVVA 356 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~-~~~--~~---d~~~-l~sgs~dg~I~iWd~~~ 356 (369)
++..+| |+..|+++| ++|++||+++.+.+..|.||..... +.. .. .|.+ |.+...+.-|.+|-+..
T Consensus 149 sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 149 SLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999 999999987 8899999999999999999983211 111 11 2444 55666678888997654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.8e-08 Score=85.83 Aligned_cols=238 Identities=16% Similarity=0.148 Sum_probs=143.5
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
-+.|.-|.|+-|+ ..+|.....++.|.+|++... .+...- ..+..|...++|||++..++.++ .++
T Consensus 48 ldki~yieW~ads---~~ilC~~yk~~~vqvwsl~Qp-------ew~ckI---deg~agls~~~WSPdgrhiL~ts-eF~ 113 (447)
T KOG4497|consen 48 LDKIVYIEWKADS---CHILCVAYKDPKVQVWSLVQP-------EWYCKI---DEGQAGLSSISWSPDGRHILLTS-EFD 113 (447)
T ss_pred HHHhhheeeeccc---eeeeeeeeccceEEEEEeecc-------eeEEEe---ccCCCcceeeeECCCcceEeeee-cce
Confidence 3667888898763 678888899999999999854 122211 11223566899999776666666 999
Q ss_pred ceEEEEeCCcceEEE-Eeee-CCcceeeeccCCCCCCCCcEEEE------------------------------------
Q 017601 172 KSIDVYDQDIHLRTL-RTLW-YPSSLNFVQNLSPVNGGPNMLAV------------------------------------ 213 (369)
Q Consensus 172 ~~i~lwd~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~lla~------------------------------------ 213 (369)
-.|.+|.+....-.+ ...+ +...++|. +|+ ++.+.
T Consensus 114 lriTVWSL~t~~~~~~~~pK~~~kg~~f~------~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW 186 (447)
T KOG4497|consen 114 LRITVWSLNTQKGYLLPHPKTNVKGYAFH------PDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW 186 (447)
T ss_pred eEEEEEEeccceeEEecccccCceeEEEC------CCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence 999999874322111 1000 11112221 222 22221
Q ss_pred E-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeee--------------
Q 017601 214 T-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSR-------------- 277 (369)
Q Consensus 214 s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~-------------- 277 (369)
+ +++.+.+||---. ..+..+.- +-.+..++|+|.+ .|+.|+.|+.++|.+--+++++.+
T Consensus 187 sPdg~~laVwd~~Le---ykv~aYe~--~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~ 261 (447)
T KOG4497|consen 187 SPDGNWLAVWDNVLE---YKVYAYER--GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHL 261 (447)
T ss_pred CCCCcEEEEecchhh---heeeeeee--ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhh
Confidence 1 3445677774322 22222222 3568899999988 999999999999876433222111
Q ss_pred ----------------------------------------------cc------ccccCceEEEEEcCCCCCEEEEEE--
Q 017601 278 ----------------------------------------------WV------HCSKYEITGLSFSSIDSNYIYVQG-- 303 (369)
Q Consensus 278 ----------------------------------------------~~------~h~~~~v~~l~~sp~d~~~l~s~s-- 303 (369)
++ +. +-.+--++||+ |..++++-.
T Consensus 262 ~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP-k~g~g~lafs~-Ds~y~aTrnd~ 339 (447)
T KOG4497|consen 262 LEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP-KCGAGKLAFSC-DSTYAATRNDK 339 (447)
T ss_pred hhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc-ccccceeeecC-CceEEeeecCC
Confidence 11 11 12345689999 999988853
Q ss_pred CCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 304 VDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 304 ~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.-+.+.+||++.-++...+...+....+..-|....|+.+.....+++|...-.
T Consensus 340 ~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 340 YPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred CCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 346899999998666555532221234444554455555555667999987543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-08 Score=100.27 Aligned_cols=200 Identities=10% Similarity=0.029 Sum_probs=129.3
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcceE---EEE---eee-C---CcceeeeccCCCCCCCCcEEEEEcCCeEE
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLR---TLR---TLW-Y---PSSLNFVQNLSPVNGGPNMLAVTEGCQLT 220 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~---~~~---~~~-~---~~~v~~~~~~~~~~~~~~lla~s~d~~v~ 220 (369)
+..++.++....+++++ |.||+|++||..+... +++ +.. . ...++.+. .+..++.++.||.|+
T Consensus 1051 v~k~a~s~~~~s~Fvsg-S~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~------~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSG-SDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG------NGDQFAVSTKDGSVR 1123 (1431)
T ss_pred ccceeecCCCCceEEEe-cCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc------CCCeEEEEcCCCeEE
Confidence 34678887666789998 9999999999743221 111 111 1 23344443 256888889999999
Q ss_pred EEeCCcc--cCC--ceeeeeeccCCCcE-EEEEECCCC---cEEEEeCCCcEEEEeCCCceeeeeccccc-cCceEEEEE
Q 017601 221 IWDLRMK--ENG--GCLHRICGSVGDIL-YAVCSSSTG---NIAVAGADRTVTIYDPRRWSALSRWVHCS-KYEITGLSF 291 (369)
Q Consensus 221 iwD~~~~--~~~--~~~~~~~~~~~~~v-~~v~~sp~g---~lasgs~D~~v~vwD~~~~~~~~~~~~h~-~~~v~~l~~ 291 (369)
+.++... +.. .+......+..+.+ ..-+|.... .|+.+..-+.|..||+|....+.+++... .+.|++++.
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVI 1203 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEe
Confidence 9998752 111 11111111112333 334554433 67777888899999999866655554211 378999999
Q ss_pred cCCCCCEEEEEECCCeEEEEECcCCceeEEEEc-CC-CeeeeeEcC---CCCE-EEEEe-CCCcEEEEECCCCc
Q 017601 292 SSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG-DS-NWLGFSKCS---NRDV-LGGWS-DSGSIFVADVVAKE 358 (369)
Q Consensus 292 sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g-~~-~~~~~~~~~---d~~~-l~sgs-~dg~I~iWd~~~~~ 358 (369)
+| .++.++.|..-|.+-+||++=+.++..+.- +. ....+..|+ .... +++++ ..+.|.+|++.+|.
T Consensus 1204 dp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1204 DP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred cC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 99 999999999999999999998777766632 22 112233344 2244 44444 57899999999884
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.2e-09 Score=93.00 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=103.8
Q ss_pred EEECCCCceeEEEEecccceEEEEeCC--cc-eE---EEEeeeCCcceeeeccCCCCCCCCcEEE--EEcCCeEEEEeCC
Q 017601 154 LCFSPSQWSMAAVARSFSKSIDVYDQD--IH-LR---TLRTLWYPSSLNFVQNLSPVNGGPNMLA--VTEGCQLTIWDLR 225 (369)
Q Consensus 154 l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~-~~---~~~~~~~~~~v~~~~~~~~~~~~~~lla--~s~d~~v~iwD~~ 225 (369)
+.++| +..++|++ -.++...+++.. .. .+ .......+..+.++.. +...+++ .++...+.+|...
T Consensus 68 ~~~s~-~~~llAv~-~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~-----~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 68 VLTSD-SGRLVAVA-TSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRE-----DTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccCC-CceEEEEE-eCCCceEEEEEecCCCcceeeeEeecccCcceeeeeec-----cceEEEEeecCCceeeeeeccc
Confidence 34445 45567776 455555555432 11 11 1222234556666652 1223333 3455667777665
Q ss_pred cccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEEE
Q 017601 226 MKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
.+ .+...+ +| -..++.|+|+||+ +|.++..|..|+|-....--.+..|. || +.-|..++.-+ +..|+|+|
T Consensus 141 ~~---~~~~~l-Gh-vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH-~eFVS~isl~~--~~~LlS~s 212 (390)
T KOG3914|consen 141 SG---RCEPIL-GH-VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGH-KEFVSTISLTD--NYLLLSGS 212 (390)
T ss_pred cc---Ccchhh-hh-hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcccc-Hhheeeeeecc--CceeeecC
Confidence 43 444333 44 4889999999999 99999999999997776666666665 79 99999999987 45689999
Q ss_pred CCCeEEEEECcCCceeEEE
Q 017601 304 VDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 304 ~D~~i~vwd~~~~~~~~~~ 322 (369)
.|+++++||+++++++.++
T Consensus 213 GD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCCcEEEEecccCCccccc
Confidence 9999999999998877666
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-07 Score=91.31 Aligned_cols=176 Identities=18% Similarity=0.116 Sum_probs=107.6
Q ss_pred cceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc---CCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 171 SKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE---GCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 171 d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~---d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
...|.++|.+. ..+.+.. +...+.... ++||+..|+.++. ...|.+||+.++ ... .+... .+.+.+
T Consensus 175 ~~~L~~~D~dG~~~~~l~~--~~~~v~~p~---wSPDG~~la~~s~~~~~~~I~~~dl~~g---~~~-~l~~~-~g~~~~ 244 (427)
T PRK02889 175 RYQLQISDADGQNAQSALS--SPEPIISPA---WSPDGTKLAYVSFESKKPVVYVHDLATG---RRR-VVANF-KGSNSA 244 (427)
T ss_pred ccEEEEECCCCCCceEecc--CCCCcccce---EcCCCCEEEEEEccCCCcEEEEEECCCC---CEE-EeecC-CCCccc
Confidence 34677777643 2233221 222222222 3467777777664 246999999887 332 23222 245678
Q ss_pred EEECCCC-cEE-EEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEEC-CCeEEEEEC--cCCceeE
Q 017601 247 VCSSSTG-NIA-VAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV-DYEVFCGQW--RESSKVF 320 (369)
Q Consensus 247 v~~sp~g-~la-sgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~--~~~~~~~ 320 (369)
.+|+||| .|+ +.+.++...||.+.. +.....+..+ ........|+| ||+.|+..+. ++...+|.+ ..++...
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCC-CCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence 8999999 665 567788777765432 2335566666 55667889999 9998887664 456666655 4443322
Q ss_pred -EEEcCCCeeeeeEcCCCCEEEEEeCCC---cEEEEECCCCcc
Q 017601 321 -AFRGDSNWLGFSKCSNRDVLGGWSDSG---SIFVADVVAKEN 359 (369)
Q Consensus 321 -~~~g~~~~~~~~~~~d~~~l~sgs~dg---~I~iWd~~~~~~ 359 (369)
.+.+... .....++||++|+..+.++ .|++||+.+++.
T Consensus 323 lt~~g~~~-~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 323 VTFTGSYN-TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred EecCCCCc-CceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 2333221 2334577999998777654 699999987753
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.2e-09 Score=100.46 Aligned_cols=237 Identities=16% Similarity=0.201 Sum_probs=146.3
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEE
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
-.+.|+|... ...-+++.+.. .-++|++...... ...+-+.+|.. +++++.|+|+.+.++|++ +.|..+.
T Consensus 71 ad~qws~h~a-~~~wiVsts~q-kaiiwnlA~ss~~--aIef~lhghsr-----aitd~n~~~q~pdVlatc-svdt~vh 140 (1081)
T KOG0309|consen 71 ADVQWSPHPA-KPYWIVSTSNQ-KAIIWNLAKSSSN--AIEFVLHGHSR-----AITDINFNPQHPDVLATC-SVDTYVH 140 (1081)
T ss_pred cceecccCCC-CceeEEecCcc-hhhhhhhhcCCcc--ceEEEEecCcc-----ceeccccCCCCCcceeec-cccccce
Confidence 3445555421 12333333332 3456777654321 11122333332 355899999999999999 9999999
Q ss_pred EEeCCcceEEEEee--e--CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECC
Q 017601 176 VYDQDIHLRTLRTL--W--YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSS 251 (369)
Q Consensus 176 lwd~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp 251 (369)
.||....-+.+-.. + ....+.+.. .+..+++.+..+-|++||+|.+. .++..++++ ...|+.++|+.
T Consensus 141 ~wd~rSp~~p~ys~~~w~s~asqVkwny------k~p~vlasshg~~i~vwd~r~gs--~pl~s~K~~-vs~vn~~~fnr 211 (1081)
T KOG0309|consen 141 AWDMRSPHRPFYSTSSWRSAASQVKWNY------KDPNVLASSHGNDIFVWDLRKGS--TPLCSLKGH-VSSVNSIDFNR 211 (1081)
T ss_pred eeeccCCCcceeeeecccccCceeeecc------cCcchhhhccCCceEEEeccCCC--cceEEeccc-ceeeehHHHhh
Confidence 99986444333221 1 123333332 23577888888899999999874 667777776 68899999987
Q ss_pred CC--cEEEEeCCCcEEEEeCCCceee--eeccccccCceEEEEEcCCCCC--EEEEEECCCeEEE---------EECcC-
Q 017601 252 TG--NIAVAGADRTVTIYDPRRWSAL--SRWVHCSKYEITGLSFSSIDSN--YIYVQGVDYEVFC---------GQWRE- 315 (369)
Q Consensus 252 ~g--~lasgs~D~~v~vwD~~~~~~~--~~~~~h~~~~v~~l~~sp~d~~--~l~s~s~D~~i~v---------wd~~~- 315 (369)
.- .+.+.+.|++|+.||..+.... ++.. . ..+|..-.|-| -|. ++.-.-.+..+.+ |+..+
T Consensus 212 ~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t-~~piw~~r~~P-fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~ 288 (1081)
T KOG0309|consen 212 FKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-T-NFPIWRGRYLP-FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL 288 (1081)
T ss_pred hhhhhhcccCCCCceeeecccccccccceecc-c-cCcceeccccc-cCceeEeccccCCeeeeeccccchhhhhccccC
Confidence 65 8999999999999998764332 2222 2 46676666666 332 2211111223333 33332
Q ss_pred CceeEEEEcCCCeeeeeE--------cC----C-CCEEEEEeCCCcEEEEECCC
Q 017601 316 SSKVFAFRGDSNWLGFSK--------CS----N-RDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 316 ~~~~~~~~g~~~~~~~~~--------~~----d-~~~l~sgs~dg~I~iWd~~~ 356 (369)
...++.|.||. .-+.. |. + .-.|++.|.|.++++|-+..
T Consensus 289 ~~pVh~F~GH~--D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 289 NTPVHTFVGHD--DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CcceeeecCcc--hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 46889999998 22111 11 1 12599999999999998754
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-07 Score=86.93 Aligned_cols=230 Identities=13% Similarity=0.117 Sum_probs=146.7
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC-CceeEEE----Eecc
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS-QWSMAAV----ARSF 170 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~a~----~~s~ 170 (369)
+++.|++|+ .+++-=....+++++.... ..+ .++. +..+++.++++|. .+..+|+ .++.
T Consensus 129 W~~qfs~dE-----sl~arlv~nev~f~~~~~f-~~~-~~kl---------~~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 129 WVPQFSIDE-----SLAARLVSNEVQFYDLGSF-KTI-QHKL---------SVSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred cccccccch-----hhhhhhhcceEEEEecCCc-cce-eeee---------eccceeeEEecCCCCCceEEEEccCCCCC
Confidence 688898885 4444444567888888753 111 1111 1234667889985 3344554 1245
Q ss_pred cceEEEEeCCc--ceEE--EEeeeCCcceeeeccCCCCCCCCc--EEEEEc-C---------CeEEEEeCCcccCCceee
Q 017601 171 SKSIDVYDQDI--HLRT--LRTLWYPSSLNFVQNLSPVNGGPN--MLAVTE-G---------CQLTIWDLRMKENGGCLH 234 (369)
Q Consensus 171 d~~i~lwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~~~--lla~s~-d---------~~v~iwD~~~~~~~~~~~ 234 (369)
-..|+||.... .... .+++...+.+.+.- . +-+.. +|+.++ | .++.+.++... .+.-
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksFFkadkvqm~W-N---~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~---s~~V 265 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSFFKADKVQMKW-N---KLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE---SVSV 265 (566)
T ss_pred CcEEEEeccccccccchhhhccccccceeEEEe-c---cCCceEEEEEEEeecCCCccccccceEEEEEecCc---eEEE
Confidence 56899997651 1111 11111122222221 1 11222 223332 2 37888888733 4554
Q ss_pred eeeccCCCcEEEEEECCCC-cEEE--EeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC---CeE
Q 017601 235 RICGSVGDILYAVCSSSTG-NIAV--AGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD---YEV 308 (369)
Q Consensus 235 ~~~~~~~~~v~~v~~sp~g-~las--gs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D---~~i 308 (369)
.+... ++|+++.|+|+| .+++ |=.=-.+.|||++ +.++..+. +++=+.+-|+| .|++++-+|-+ |.+
T Consensus 266 ~L~k~--GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---egpRN~~~fnp-~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 266 PLLKE--GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EGPRNTAFFNP-HGNIILLAGFGNLPGDM 338 (566)
T ss_pred ecCCC--CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CCCccceEECC-CCCEEEEeecCCCCCce
Confidence 45544 999999999999 4443 5556689999987 66777665 45668899999 99999998865 689
Q ss_pred EEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeC------CCcEEEEECCC
Q 017601 309 FCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSD------SGSIFVADVVA 356 (369)
Q Consensus 309 ~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~------dg~I~iWd~~~ 356 (369)
-|||+.+.+++..+..... .-+..+|||++|++++. |+.++||+...
T Consensus 339 EvwDv~n~K~i~~~~a~~t-t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 339 EVWDVPNRKLIAKFKAANT-TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEeccchhhccccccCCc-eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 9999999888888865431 33455899999988874 58899999843
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=91.07 Aligned_cols=149 Identities=13% Similarity=0.145 Sum_probs=100.6
Q ss_pred CCCcEEEEEc-CCeEEEEeCCcccC-CceeeeeeccCCCcEEEEEECCCC----cEEEEeCCCcEEEEeCCCceeeeecc
Q 017601 206 GGPNMLAVTE-GCQLTIWDLRMKEN-GGCLHRICGSVGDILYAVCSSSTG----NIAVAGADRTVTIYDPRRWSALSRWV 279 (369)
Q Consensus 206 ~~~~lla~s~-d~~v~iwD~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g----~lasgs~D~~v~vwD~~~~~~~~~~~ 279 (369)
+++.+++++. +....++|.+...+ .+.+...... ..-+++.|-.+. ..-.+++...+.+|.... .+.....
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~--~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~~~~~l 148 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP--KRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GRCEPIL 148 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc--cCcceeeeeeccceEEEEeecCCceeeeeecccc-cCcchhh
Confidence 4567777665 45555777765432 2344444433 333444444444 223345566667776665 3444556
Q ss_pred ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE-EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 280 HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF-RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 280 ~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~-~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|| -.-++.|+|+| |+++++++-.|..||+-.....-.+..| -||.-+..-..+-++..|+|||.|++|++||.++|+
T Consensus 149 Gh-vSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 149 GH-VSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred hh-hhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence 89 89999999999 9999999999999999877654444444 578733333334478889999999999999999998
Q ss_pred c
Q 017601 359 N 359 (369)
Q Consensus 359 ~ 359 (369)
.
T Consensus 227 ~ 227 (390)
T KOG3914|consen 227 L 227 (390)
T ss_pred c
Confidence 5
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-07 Score=86.87 Aligned_cols=240 Identities=14% Similarity=0.088 Sum_probs=131.9
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEE
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
-.+.|+||+ ..+...+.+|.|.++|+.+.. . ...+.. +. .-.++++++++...++++ ...+++.
T Consensus 40 ~~~~~s~Dg----r~~yv~~rdg~vsviD~~~~~-~----v~~i~~-----G~-~~~~i~~s~DG~~~~v~n-~~~~~v~ 103 (369)
T PF02239_consen 40 AGLKFSPDG----RYLYVANRDGTVSVIDLATGK-V----VATIKV-----GG-NPRGIAVSPDGKYVYVAN-YEPGTVS 103 (369)
T ss_dssp EEEE-TT-S----SEEEEEETTSEEEEEETTSSS-E----EEEEE------SS-EEEEEEE--TTTEEEEEE-EETTEEE
T ss_pred eEEEecCCC----CEEEEEcCCCeEEEEECCccc-E----EEEEec-----CC-CcceEEEcCCCCEEEEEe-cCCCcee
Confidence 346788884 455556788999999998652 1 111111 11 123799999665444444 7899999
Q ss_pred EEeCC--cceEEEEeeeCC-----cceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 176 VYDQD--IHLRTLRTLWYP-----SSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 176 lwd~~--~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
++|.. +.++.+.....+ ..+.-+-.. +....++..- +-+.|-+-|...... .....+.. +......
T Consensus 104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s---~~~~~fVv~lkd~~~I~vVdy~d~~~-~~~~~i~~--g~~~~D~ 177 (369)
T PF02239_consen 104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS---PGRPEFVVNLKDTGEIWVVDYSDPKN-LKVTTIKV--GRFPHDG 177 (369)
T ss_dssp EEETTT--EEEEEE--EE-TTTS---EEEEEE----SSSSEEEEEETTTTEEEEEETTTSSC-EEEEEEE----TTEEEE
T ss_pred EeccccccceeecccccccccccCCCceeEEec---CCCCEEEEEEccCCeEEEEEeccccc-cceeeecc--ccccccc
Confidence 99975 345554433211 122222111 2233455444 457888888776521 12233433 3677889
Q ss_pred EECCCC-cE-EEEeCCCcEEEEeCCCceeeeecc------------------------ccc-------------------
Q 017601 248 CSSSTG-NI-AVAGADRTVTIYDPRRWSALSRWV------------------------HCS------------------- 282 (369)
Q Consensus 248 ~~sp~g-~l-asgs~D~~v~vwD~~~~~~~~~~~------------------------~h~------------------- 282 (369)
.|+|++ ++ ++...++.|-++|.++++.+..+. .|.
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred ccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhh
Confidence 999999 54 445667788888887654432210 010
Q ss_pred -----------cCceEEEEEcCCCCCEEEEE----ECCCeEEEEECcCCceeEEEEc--CCCeeeeeEcCCCCEEEEEe-
Q 017601 283 -----------KYEITGLSFSSIDSNYIYVQ----GVDYEVFCGQWRESSKVFAFRG--DSNWLGFSKCSNRDVLGGWS- 344 (369)
Q Consensus 283 -----------~~~v~~l~~sp~d~~~l~s~----s~D~~i~vwd~~~~~~~~~~~g--~~~~~~~~~~~d~~~l~sgs- 344 (369)
... ..+.-+| +++++... ....+|.++|.++.+....+.. ..+...++..+||+.+....
T Consensus 258 ~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~ 335 (369)
T PF02239_consen 258 AWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVW 335 (369)
T ss_dssp BTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE
T ss_pred cCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEe
Confidence 111 3567789 89998887 3447999999999877777642 21235667778888644333
Q ss_pred -CCCcEEEEECCCCcc
Q 017601 345 -DSGSIFVADVVAKEN 359 (369)
Q Consensus 345 -~dg~I~iWd~~~~~~ 359 (369)
.++.|.|||.+|.+.
T Consensus 336 ~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 336 DGNGAIVVYDAKTLKE 351 (369)
T ss_dssp --TTEEEEEETTTTEE
T ss_pred cCCCEEEEEECCCcEE
Confidence 344799999999864
|
... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5e-07 Score=87.13 Aligned_cols=198 Identities=9% Similarity=-0.055 Sum_probs=112.0
Q ss_pred EEEECCCCcee-E-EEEecccc--eEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-----CCeEEEE
Q 017601 153 GLCFSPSQWSM-A-AVARSFSK--SIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-----GCQLTIW 222 (369)
Q Consensus 153 ~l~~~p~~~~~-~-a~~~s~d~--~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-----d~~v~iw 222 (369)
.=+|+|++..+ + .++ ..++ .|.+.+... ..+.+...... .+. ..++|||..|+.+++ +-.+.+|
T Consensus 189 sP~wSPDG~~~~~~y~S-~~~g~~~I~~~~l~~g~~~~lt~~~g~---~~~--p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVS-YKLGVPKIFLGSLENPAGKKILALQGN---QLM--PTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred cceEccCCCceEEEEEE-ccCCCceEEEEECCCCCceEeecCCCC---ccc--eEECCCCCEEEEEECCCCCcceeEEEe
Confidence 35899976542 2 233 3444 455556542 22222221111 111 124577878877653 2245557
Q ss_pred eCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe-CCCcEEEEe--CCC-ceeeeeccccccCceEEEEEcCCCCC
Q 017601 223 DLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG-ADRTVTIYD--PRR-WSALSRWVHCSKYEITGLSFSSIDSN 297 (369)
Q Consensus 223 D~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs-~D~~v~vwD--~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~ 297 (369)
|+..+..+...+..... .......+|+||| .|+..+ .++...+|. +.. +.....+..+ ...+....||| ||+
T Consensus 263 ~~~~g~~g~~~~lt~~~-~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~p~wSP-DG~ 339 (428)
T PRK01029 263 SLETGAIGKPRRLLNEA-FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSCPAWSP-DGK 339 (428)
T ss_pred ecccCCCCcceEeecCC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccceeECC-CCC
Confidence 77653211222222222 1334678999999 666655 466656664 432 2334445555 55678899999 999
Q ss_pred EEEEEECC---CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEE-EeC--CCcEEEEECCCCcc
Q 017601 298 YIYVQGVD---YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGG-WSD--SGSIFVADVVAKEN 359 (369)
Q Consensus 298 ~l~s~s~D---~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~s-gs~--dg~I~iWd~~~~~~ 359 (369)
.|+..+.+ ..|.+||+.+++......+.........++||+.|+- ... ...|++||+.+++.
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 98877654 4799999988776544433221123444678887764 333 35788999987653
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.8e-07 Score=85.28 Aligned_cols=190 Identities=14% Similarity=0.035 Sum_probs=112.5
Q ss_pred eEEEECCCCceeEEEEeccc--ceEEEEeCCcc-eEEEEeeeCCcceeeeccCCCCCCCCcEEEE-EcC--CeEEEEeCC
Q 017601 152 SGLCFSPSQWSMAAVARSFS--KSIDVYDQDIH-LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAV-TEG--CQLTIWDLR 225 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d--~~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~-s~d--~~v~iwD~~ 225 (369)
...+|+|++. .++.+...+ ..|.+||.... ...+... ....... .++||+..|+.. +.+ ..|.+||+.
T Consensus 193 ~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~~~--~~~~~~~---~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 193 LSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVASF--PGMNGAP---AFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred ecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEeecC--CCCccce---EECCCCCEEEEEECCCCCccEEEEECC
Confidence 3578999655 455542332 47999997532 2222221 1111111 134567667654 333 368889988
Q ss_pred cccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CC--cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEE
Q 017601 226 MKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DR--TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~--~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s 301 (369)
++ .. ..+..+ .......+|+|+| +|+..+. ++ .|.++|+.+++. ..+..+ ...+....|+| ++++++.
T Consensus 267 ~~---~~-~~l~~~-~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~-~~~~~~~~~sp-dg~~i~~ 338 (417)
T TIGR02800 267 GK---QL-TRLTNG-PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFR-GGYNASPSWSP-DGDLIAF 338 (417)
T ss_pred CC---CE-EECCCC-CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecC-CCCccCeEECC-CCCEEEE
Confidence 76 32 333332 2344567899999 7766554 33 577788876553 344444 55678889999 9999999
Q ss_pred EECCC---eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCC---cEEEEECCC
Q 017601 302 QGVDY---EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSG---SIFVADVVA 356 (369)
Q Consensus 302 ~s~D~---~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg---~I~iWd~~~ 356 (369)
++.++ .|.+||+.++.......... ......++|+..|+..+.++ .+++.+...
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGERVLTDTGL-DESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEccCCceEEEEEeCCCCCeEEccCCCC-CCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 88876 89999998754433222111 12223466888887777654 455555443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-08 Score=88.38 Aligned_cols=217 Identities=14% Similarity=0.160 Sum_probs=135.9
Q ss_pred EEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc-cccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEE
Q 017601 98 IALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL-TYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDV 176 (369)
Q Consensus 98 l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~l 176 (369)
..|||++ ..+|+.... ++.+-|..+- ..+ .|... + . +.-+-|..+. ..+..+...++.|.+
T Consensus 14 c~fSp~g----~yiAs~~~y-rlviRd~~tl----q~~qlf~cl--d-k-----i~yieW~ads-~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 14 CSFSPCG----NYIASLSRY-RLVIRDSETL----QLHQLFLCL--D-K-----IVYIEWKADS-CHILCVAYKDPKVQV 75 (447)
T ss_pred eeECCCC----Ceeeeeeee-EEEEeccchh----hHHHHHHHH--H-H-----hhheeeeccc-eeeeeeeeccceEEE
Confidence 4688984 789998887 6666554422 111 11110 0 0 1126676644 444444388889999
Q ss_pred EeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-c
Q 017601 177 YDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-N 254 (369)
Q Consensus 177 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~ 254 (369)
|++.++...-+...++..+....++ |||..++..++ |-.|.+|.+.+. +... +.+. ...+..++|+||| +
T Consensus 76 wsl~Qpew~ckIdeg~agls~~~WS---PdgrhiL~tseF~lriTVWSL~t~---~~~~-~~~p-K~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 76 WSLVQPEWYCKIDEGQAGLSSISWS---PDGRHILLTSEFDLRITVWSLNTQ---KGYL-LPHP-KTNVKGYAFHPDGQF 147 (447)
T ss_pred EEeecceeEEEeccCCCcceeeeEC---CCcceEeeeecceeEEEEEEeccc---eeEE-eccc-ccCceeEEECCCCce
Confidence 9998776666555566667676654 56767776554 889999999886 4433 3443 4567889999999 5
Q ss_pred EEEEeCCC---cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE--CCCeEEEEECcCCceeEEEEcCCCee
Q 017601 255 IAVAGADR---TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG--VDYEVFCGQWRESSKVFAFRGDSNWL 329 (369)
Q Consensus 255 lasgs~D~---~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s--~D~~i~vwd~~~~~~~~~~~g~~~~~ 329 (369)
.+..+.-. .+.|..-..+..+..+.-. +-..+.+.|+| ||+.|+.-- .+..|..+... ....
T Consensus 148 ~ai~sRrDCkdyv~i~~c~~W~ll~~f~~d-T~DltgieWsP-dg~~laVwd~~Leykv~aYe~~-----------lG~k 214 (447)
T KOG4497|consen 148 CAILSRRDCKDYVQISSCKAWILLKEFKLD-TIDLTGIEWSP-DGNWLAVWDNVLEYKVYAYERG-----------LGLK 214 (447)
T ss_pred eeeeecccHHHHHHHHhhHHHHHHHhcCCC-cccccCceECC-CCcEEEEecchhhheeeeeeec-----------ccee
Confidence 55554321 2233333346666677766 67789999999 998876521 22333322221 1113
Q ss_pred eeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 330 GFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 330 ~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
.+..+|.+++|+.|+.|+.++|-+
T Consensus 215 ~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 215 FVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred EEEeccccceEEeeccchhhhhhc
Confidence 445577889999999999998854
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-06 Score=81.82 Aligned_cols=186 Identities=14% Similarity=0.039 Sum_probs=118.1
Q ss_pred eEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC
Q 017601 163 MAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
++++.-..+++|.+.|... .+..+.....+..... +++|+.++..++.|+.|.++|+.+. +.++++...
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~-----~s~Dgr~~yv~~rdg~vsviD~~~~---~~v~~i~~G- 77 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLK-----FSPDGRYLYVANRDGTVSVIDLATG---KVVATIKVG- 77 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE------TT-SSEEEEEETTSEEEEEETTSS---SEEEEEE-S-
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEE-----ecCCCCEEEEEcCCCeEEEEECCcc---cEEEEEecC-
Confidence 4444437789999999863 4455544322211111 3367777777888999999999998 788888765
Q ss_pred CCcEEEEEECCCC-cEEEE-eCCCcEEEEeCCCceeeeecccc------ccCceEEEEEcCCCCCEEEEEECC-CeEEEE
Q 017601 241 GDILYAVCSSSTG-NIAVA-GADRTVTIYDPRRWSALSRWVHC------SKYEITGLSFSSIDSNYIYVQGVD-YEVFCG 311 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasg-s~D~~v~vwD~~~~~~~~~~~~h------~~~~v~~l~~sp~d~~~l~s~s~D-~~i~vw 311 (369)
.....+++|+|| +++++ -.++.+.++|.++.+++.++... ....+.++..+| ....++..-.| +.|.+-
T Consensus 78 -~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 78 -GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp -SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEE
T ss_pred -CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEE
Confidence 778899999999 66655 46899999999999998876532 134678898899 66656555555 788888
Q ss_pred ECcCCcee--EEEEcCCCeeeeeEcCCCCEEEE-EeCCCcEEEEECCCCcc
Q 017601 312 QWRESSKV--FAFRGDSNWLGFSKCSNRDVLGG-WSDSGSIFVADVVAKEN 359 (369)
Q Consensus 312 d~~~~~~~--~~~~g~~~~~~~~~~~d~~~l~s-gs~dg~I~iWd~~~~~~ 359 (369)
|......+ ..+............+++++++. ...++.|-++|.++++.
T Consensus 156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred EeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 87664322 33332222233444668887554 56678999999988754
|
... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=95.45 Aligned_cols=244 Identities=13% Similarity=0.132 Sum_probs=150.8
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCc--cccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVD--RLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+|+..|..|+--.++ .-..+++++.+|.+|.+.....++. ...+..+.|..++. .+-|-. +-..++
T Consensus 731 f~GH~~~iRai~AidNE----NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~-----~igfL~-~lr~i~ 800 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNE----NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIH-----DIGFLA-DLRSIA 800 (1034)
T ss_pred ccCcHHHhHHHHhcccc----cceeeccCCceEEEEEeccccCccccceeeeEhhhccCccc-----ceeeee-ccceee
Confidence 45899999988754443 3445566777899999987655443 24566666766655 345544 223445
Q ss_pred EEecccceEEEEeCC--cceEEEEeee---CCcceeeeccCCCCCCCCcEEEE-EcCCeEEEEeCCcccCCceeeeee--
Q 017601 166 VARSFSKSIDVYDQD--IHLRTLRTLW---YPSSLNFVQNLSPVNGGPNMLAV-TEGCQLTIWDLRMKENGGCLHRIC-- 237 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~--~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~lla~-s~d~~v~iwD~~~~~~~~~~~~~~-- 237 (369)
+ .|+-|.+||.- .....+.... ....+..+.. -+...++++ +...+|+++|.|..+-....+.-.
T Consensus 801 S---cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n----v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 801 S---CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN----VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred e---ccCcceeecccccchhHhhhcCcccCCCceeEeccc----CcchheeeeccchhhheeeecccccceeeEEeccCC
Confidence 4 48999999963 2222221111 1223333331 123455554 678999999999873212222221
Q ss_pred ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE-EECcC
Q 017601 238 GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC-GQWRE 315 (369)
Q Consensus 238 ~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v-wd~~~ 315 (369)
++ ...+.+++..|.| ++|.|-..|.|.+.|.|+|+.+..|..- .-....++ .| ..+.|++...|.++-+ |-.-.
T Consensus 874 ~P-na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm-ecdllqla-ap-sdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 874 GP-NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM-ECDLLQLA-AP-SDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred CC-chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc-cchhhhhc-Cc-hhHHHHhhcccceeEeeehhcC
Confidence 22 4668999999999 9999999999999999999999998866 44455554 34 5577888888999988 86555
Q ss_pred CceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 316 SSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 316 ~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
+......+....-..+. -.-|.-|++......+.+|.
T Consensus 950 gimh~q~kpppepahfl-qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 950 GIMHLQDKPPPEPAHFL-QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred CeeeeccCCCCcchhhh-hccCceeEEeccCcEEEEEe
Confidence 44333332211000000 01355667776667777773
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.8e-09 Score=92.59 Aligned_cols=138 Identities=9% Similarity=0.050 Sum_probs=109.0
Q ss_pred EEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc-----eeeeeccccccC
Q 017601 211 LAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW-----SALSRWVHCSKY 284 (369)
Q Consensus 211 la~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~-----~~~~~~~~h~~~ 284 (369)
++++.+.+|-|-|+.++ .-+.|... ..|.++.|...+ ++..|...|.|-.+|+|.. .+.+.+. | ..
T Consensus 228 fs~G~sqqv~L~nvetg----~~qsf~sk--sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h-~S 299 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG----HQQSFQSK--SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-H-DS 299 (425)
T ss_pred ecccccceeEEEEeecc----cccccccc--hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-c-Cc
Confidence 66778889999999987 23345444 889999998877 9999999999999999974 3333333 5 78
Q ss_pred ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCce---eEEEEcCCCeeeeeEcC-----CCCEEEEEeCCCcEEEEECCC
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSK---VFAFRGDSNWLGFSKCS-----NRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~---~~~~~g~~~~~~~~~~~-----d~~~l~sgs~dg~I~iWd~~~ 356 (369)
.|+++..=..++++|++.+++|+|++||.+.-++ +..+.||.+ .....+ ....|+++++|...+||.++.
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN--~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN--LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc--cccccccccccccceEEEccCeeEEEEEeccc
Confidence 8888876554668999999999999999998666 999999983 333322 566888999999999999987
Q ss_pred Cc
Q 017601 357 KE 358 (369)
Q Consensus 357 ~~ 358 (369)
+.
T Consensus 378 gh 379 (425)
T KOG2695|consen 378 GH 379 (425)
T ss_pred Cc
Confidence 75
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-07 Score=82.62 Aligned_cols=218 Identities=10% Similarity=0.036 Sum_probs=129.1
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccc---------------ccccCCCCC--------
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLT---------------YSVLPQDCG-------- 145 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~---------------~~~~~~~~~-------- 145 (369)
+.-...|+.|+|-+++... ..|.+ ..+.++.+|.+.......++.. ..+.+++..
T Consensus 81 leieEKinkIrw~~~~n~a-~FLls-tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv 158 (433)
T KOG1354|consen 81 LEIEEKINKIRWLDDGNLA-EFLLS-TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRV 158 (433)
T ss_pred hhhhhhhhhceecCCCCcc-EEEEe-cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeee
Confidence 4456778999998875433 23333 3456899999875432221100 001111110
Q ss_pred ---CCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeee-CCc-------ceeeeccCCCCCCCCcEEEEE
Q 017601 146 ---VGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLW-YPS-------SLNFVQNLSPVNGGPNMLAVT 214 (369)
Q Consensus 146 ---~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~-~~~-------~v~~~~~~~~~~~~~~lla~s 214 (369)
.+..-+.+++++.+. ..+.++ .|-.|.||.+...-+.+.... .|. -++...++|. ..+.|+..+
T Consensus 159 ~aNaHtyhiNSIS~NsD~-Et~lSA--DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~--~cn~f~YSS 233 (433)
T KOG1354|consen 159 YANAHTYHINSISVNSDK-ETFLSA--DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH--HCNVFVYSS 233 (433)
T ss_pred ccccceeEeeeeeecCcc-ceEeec--cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh--HccEEEEec
Confidence 001124578888844 455554 788999998764433332221 111 1111222221 345777788
Q ss_pred cCCeEEEEeCCcccCC-ceeeeeecc----C-------CCcEEEEEECCCC-cEEEEeCCCcEEEEeC-CCceeeeeccc
Q 017601 215 EGCQLTIWDLRMKENG-GCLHRICGS----V-------GDILYAVCSSSTG-NIAVAGADRTVTIYDP-RRWSALSRWVH 280 (369)
Q Consensus 215 ~d~~v~iwD~~~~~~~-~~~~~~~~~----~-------~~~v~~v~~sp~g-~lasgs~D~~v~vwD~-~~~~~~~~~~~ 280 (369)
.-|+|+|-|+|....- ..-+.+... . -..|..+.|+++| ++++- .=-+|++||+ ...+++.+++-
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dyltvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DYLTVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-ccceeEEEeccccCCcceEEee
Confidence 9999999999943100 000111110 0 2468889999999 66553 3479999999 45777777766
Q ss_pred ccc------------Cc---eEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 281 CSK------------YE---ITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 281 h~~------------~~---v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
| . +. -..++||. ++.++++||..+.+++++...+
T Consensus 313 h-~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 313 H-EYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred h-HhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCC
Confidence 5 3 12 34689999 8899999999999999997654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=83.24 Aligned_cols=246 Identities=13% Similarity=0.151 Sum_probs=145.9
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccccc----ccCCCCCC-------CCCCeeEEEE-CC
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYS----VLPQDCGV-------GEGSWSGLCF-SP 158 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~l~~-~p 158 (369)
-...|.++.|... +..+|++|+.|+|.++...... ++.|. ++.|.... -++-+..+.| .+
T Consensus 25 ead~ItaVefd~t----g~YlatGDkgGRVvlfer~~s~----~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDET----GLYLATGDKGGRVVLFEREKSY----GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred ccceeeEEEeccc----cceEeecCCCceEEEeeccccc----ccchhhhhhhcccccchhhhhhccHHHHhhheeeecC
Confidence 3467889999776 4799999999999998766442 11121 22332110 0112334444 44
Q ss_pred CCceeEEEEecccceEEEEeCCcc-e-----------------------EEEE---e----------------eeCCcce
Q 017601 159 SQWSMAAVARSFSKSIDVYDQDIH-L-----------------------RTLR---T----------------LWYPSSL 195 (369)
Q Consensus 159 ~~~~~~a~~~s~d~~i~lwd~~~~-~-----------------------~~~~---~----------------~~~~~~v 195 (369)
.+...+... ..|++|+||.+-.. + +.+. . ..|+..+
T Consensus 97 t~r~hFLls-tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhi 175 (460)
T COG5170 97 TGRNHFLLS-TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHI 175 (460)
T ss_pred CCcceEEEe-cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEe
Confidence 455566666 79999999975211 0 0000 0 0122222
Q ss_pred eeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceee--eeeccC----CCcEEEEEECCCC--cEEEEeCCCcEEEE
Q 017601 196 NFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLH--RICGSV----GDILYAVCSSSTG--NIAVAGADRTVTIY 267 (369)
Q Consensus 196 ~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~--~~~~~~----~~~v~~v~~sp~g--~lasgs~D~~v~vw 267 (369)
+.+ .++.|. ..+-.++|=.|.+|++.... ++.. .++.+. ..-|++..|+|.. .+.-.+..|.|++-
T Consensus 176 NSi---S~NsD~-et~lSaDdLrINLWnl~i~D--~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 176 NSI---SFNSDK-ETLLSADDLRINLWNLEIID--GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred eee---eecCch-heeeeccceeeeeccccccC--CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 222 233443 44444677889999987653 3322 222221 3468899999998 66677889999999
Q ss_pred eCCCcee------eee----------ccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCC----
Q 017601 268 DPRRWSA------LSR----------WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDS---- 326 (369)
Q Consensus 268 D~~~~~~------~~~----------~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~---- 326 (369)
|+|.... +.. +.+- ...|..+.|++ +|+++++-. -.+|++||.+. ..++++..-|.
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~ei-vsSISD~kFs~-ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEI-VSSISDFKFSD-NGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHH-hhhhcceEEcC-CCcEEEEec-cceEEEEecccccCCceeechHHHHHH
Confidence 9994221 111 1122 35688999999 999988643 24899999986 44566654332
Q ss_pred ----------CeeeeeE--cCCCCEEEEEeCCCcEEEEEC
Q 017601 327 ----------NWLGFSK--CSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 327 ----------~~~~~~~--~~d~~~l~sgs~dg~I~iWd~ 354 (369)
-+..+.. +-|...+.+||..+..-|+-.
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 0111111 226777888888887777753
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-07 Score=88.16 Aligned_cols=148 Identities=15% Similarity=0.003 Sum_probs=98.2
Q ss_pred CCCCCCcEEEEEcC---CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEE-EEeCCC--cEEEEeCCCceee
Q 017601 203 PVNGGPNMLAVTEG---CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIA-VAGADR--TVTIYDPRRWSAL 275 (369)
Q Consensus 203 ~~~~~~~lla~s~d---~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~la-sgs~D~--~v~vwD~~~~~~~ 275 (369)
++||+..++.++.+ ..|.+||+.++ +........ ..+.+++|+||| .|+ +.+.++ .|.+||+.++..
T Consensus 197 ~Spdg~~la~~~~~~~~~~i~v~d~~~g---~~~~~~~~~--~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~- 270 (417)
T TIGR02800 197 WSPDGQKLAYVSFESGKPEIYVQDLATG---QREKVASFP--GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL- 270 (417)
T ss_pred CCCCCCEEEEEEcCCCCcEEEEEECCCC---CEEEeecCC--CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-
Confidence 45677777776543 48999999876 333222222 566789999999 554 444444 588899887643
Q ss_pred eeccccccCceEEEEEcCCCCCEEEEEECC-C--eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCC---cE
Q 017601 276 SRWVHCSKYEITGLSFSSIDSNYIYVQGVD-Y--EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSG---SI 349 (369)
Q Consensus 276 ~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D-~--~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg---~I 349 (369)
..+..+ ........|+| |++.|+..+.. + .|.++|+.+++................++++++|+..+.++ .|
T Consensus 271 ~~l~~~-~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i 348 (417)
T TIGR02800 271 TRLTNG-PGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNI 348 (417)
T ss_pred EECCCC-CCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEE
Confidence 344445 45556789999 99988876653 3 68888887765433322221112334467899998888776 89
Q ss_pred EEEECCCCc
Q 017601 350 FVADVVAKE 358 (369)
Q Consensus 350 ~iWd~~~~~ 358 (369)
++||+.++.
T Consensus 349 ~~~d~~~~~ 357 (417)
T TIGR02800 349 AVMDLDGGG 357 (417)
T ss_pred EEEeCCCCC
Confidence 999988764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=105.55 Aligned_cols=180 Identities=16% Similarity=0.114 Sum_probs=128.8
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG 230 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~ 230 (369)
...=+|..+. .+++ +.|+.|++|.-+ ..+-..++... ..+..+ .|+.+|+.+..+-.||.+.+|... +
T Consensus 2213 r~~sHp~~~~-Yltg-s~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~---~f~~qGnk~~i~d~dg~l~l~q~~-p--- 2282 (2439)
T KOG1064|consen 2213 RMTSHPSDPY-YLTG-SQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRS---RFNHQGNKFGIVDGDGDLSLWQAS-P--- 2282 (2439)
T ss_pred eecCCCCCce-EEec-CCCceEEEEeccCCCeEEEeeccCc-chhhhh---hhcccCCceeeeccCCceeecccC-C---
Confidence 3444665554 4455 789999999865 34444444432 322222 234468888888899999999886 3
Q ss_pred ceeeeeeccCCCcEEEEEECCCCcEEEE---eCCCcEEEEeCCC---ceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 231 GCLHRICGSVGDILYAVCSSSTGNIAVA---GADRTVTIYDPRR---WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g~lasg---s~D~~v~vwD~~~---~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
++....+.| ......+.|-. ..++++ +.++.+.+||.-. ...++ +.| ...++.+++-| ..+.|+|||.
T Consensus 2283 k~~~s~qch-nk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H-~~gaT~l~~~P-~~qllisggr 2356 (2439)
T KOG1064|consen 2283 KPYTSWQCH-NKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCH-DGGATVLAYAP-KHQLLISGGR 2356 (2439)
T ss_pred cceeccccC-Cccccceeeee-hhhhccccCCCCCcccchhcccCcccceee--eec-CCCceEEEEcC-cceEEEecCC
Confidence 566555544 45666666654 344554 4588999999654 23344 677 89999999999 8899999999
Q ss_pred CCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 305 DYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 305 D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+|.|++||++..+++++|.. .....++++|+..|.|+||++.+.
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LDTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh---------hhhhheeeccCcccceEEEEcccc
Confidence 99999999998877777743 113578999999999999999765
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=9e-06 Score=86.53 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=101.5
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEe----------------eeCCcceeeeccCCCCCCCC-cEEEEE
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRT----------------LWYPSSLNFVQNLSPVNGGP-NMLAVT 214 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~----------------~~~~~~v~~~~~~~~~~~~~-~lla~s 214 (369)
+++|+|.+..++++. +.++.|++||... .+..+.. ...|..+.+ +++++ .+++-+
T Consensus 687 gVa~dp~~g~LyVad-~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav------spdG~~LYVADs 759 (1057)
T PLN02919 687 DVCFEPVNEKVYIAM-AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISL------SPDLKELYIADS 759 (1057)
T ss_pred EEEEecCCCeEEEEE-CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEE------eCCCCEEEEEEC
Confidence 799999666566655 7889999998743 2222210 112222322 34555 444556
Q ss_pred cCCeEEEEeCCcccCCceee-----------eeecc-------CCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceee
Q 017601 215 EGCQLTIWDLRMKENGGCLH-----------RICGS-------VGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL 275 (369)
Q Consensus 215 ~d~~v~iwD~~~~~~~~~~~-----------~~~~~-------~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~ 275 (369)
.+++|++||+.++.. ..+. .+-.. .......++|+++| .+++-..++.|++||..++...
T Consensus 760 ~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 760 ESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 689999999987521 0000 00000 00134688999999 7788888999999999876554
Q ss_pred eec-------------cccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCce
Q 017601 276 SRW-------------VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSK 318 (369)
Q Consensus 276 ~~~-------------~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~ 318 (369)
... .+. -.....+++++ +|+++++-+.+++|++||+++++.
T Consensus 839 tiaG~G~~G~~dG~~~~a~-l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQ-LSEPAGLALGE-NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEeccCCcCCCCCcccccc-cCCceEEEEeC-CCCEEEEECCCCEEEEEECCCCcc
Confidence 221 112 23578899999 999999988999999999988754
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-05 Score=75.55 Aligned_cols=250 Identities=16% Similarity=0.125 Sum_probs=137.4
Q ss_pred eEEEEeecCCCCceEEEEEec----CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 96 QSIALAETDSSGYMVLGSVDS----YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
.-|+++|++ .+|.+.+. .|.|..|.++.....+..... .. ....+-+.++++|++..++++. ..+
T Consensus 40 s~l~~~~~~----~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~-~~-----~~g~~p~~i~~~~~g~~l~van-y~~ 108 (345)
T PF10282_consen 40 SWLAVSPDG----RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS-VP-----SGGSSPCHIAVDPDGRFLYVAN-YGG 108 (345)
T ss_dssp CCEEE-TTS----SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE-EE-----ESSSCEEEEEECTTSSEEEEEE-TTT
T ss_pred ceEEEEeCC----CEEEEEEccccCCCCEEEEEECCCcceeEEeee-ec-----cCCCCcEEEEEecCCCEEEEEE-ccC
Confidence 456777763 45655544 578888888754211111000 00 0011234699999665554444 679
Q ss_pred ceEEEEeCCc--ce-EEEEeeeC----C----cceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccC-Cceeeeeec
Q 017601 172 KSIDVYDQDI--HL-RTLRTLWY----P----SSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKEN-GGCLHRICG 238 (369)
Q Consensus 172 ~~i~lwd~~~--~~-~~~~~~~~----~----~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~-~~~~~~~~~ 238 (369)
++|.++++.. .+ .......+ + ......+...++|++..++++. ....|.+|++..... ......+..
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 9999998753 11 11111110 0 0000111112345666665543 245899999976521 112233333
Q ss_pred cCCCcEEEEEECCCC-cE-EEEeCCCcEEEEeCC--Cce--eeeecc---c-c-ccCceEEEEEcCCCCCEEEEEE-CCC
Q 017601 239 SVGDILYAVCSSSTG-NI-AVAGADRTVTIYDPR--RWS--ALSRWV---H-C-SKYEITGLSFSSIDSNYIYVQG-VDY 306 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~--~~~--~~~~~~---~-h-~~~~v~~l~~sp~d~~~l~s~s-~D~ 306 (369)
..+....-++|+|++ ++ ++.-.+++|.++++. ++. .+..+. . . .......+.++| |+++|+.+. .++
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~ 267 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSN 267 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTT
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCC
Confidence 325678899999999 44 556678899999988 332 222221 1 1 012578999999 999987765 467
Q ss_pred eEEEEECcC--Cce--eEEEE--cCCCeeeeeEcCCCCEEEEEe-CCCcEEEEEC--CCCc
Q 017601 307 EVFCGQWRE--SSK--VFAFR--GDSNWLGFSKCSNRDVLGGWS-DSGSIFVADV--VAKE 358 (369)
Q Consensus 307 ~i~vwd~~~--~~~--~~~~~--g~~~~~~~~~~~d~~~l~sgs-~dg~I~iWd~--~~~~ 358 (369)
+|-+|++.. +++ +..+. |.. -..+...++|++|+.+. .++.|.+|++ ++|.
T Consensus 268 sI~vf~~d~~~g~l~~~~~~~~~G~~-Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTVPTGGKF-PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEEEESSSS-EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred EEEEEEEecCCCceEEEEEEeCCCCC-ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCc
Confidence 999999943 332 22222 221 13555577999888776 5679999976 4554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-08 Score=61.56 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=37.0
Q ss_pred ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 272 WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 272 ~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
|+++.++.+| ...|++++|+| ++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h-~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGH-SSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESS-SSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCC-CCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 4688899999 99999999999 999999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-06 Score=75.04 Aligned_cols=212 Identities=12% Similarity=-0.018 Sum_probs=124.6
Q ss_pred eEEEEeecCC-CCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceE
Q 017601 96 QSIALAETDS-SGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSI 174 (369)
Q Consensus 96 ~~l~~s~~~~-~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i 174 (369)
+.+.|.|..- .+...||.+...|...+|...+. +++.+.+..+..++. -+...+- ....+..+ +.|.++
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn----~~h~~~cd~snn~v~--~~~r~cd---~~~~~~i~-sndht~ 140 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTN----DGHLYQCDVSNNDVT--LVKRYCD---LKFPLNIA-SNDHTG 140 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCc----ccceeeecccccchh--hhhhhcc---cccceeec-cCCcce
Confidence 3455555310 23468888889999999988754 233344333222111 0001111 12234555 789999
Q ss_pred EEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-
Q 017601 175 DVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG- 253 (369)
Q Consensus 175 ~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g- 253 (369)
+++++.........+...-.++.. .+++|+..++++++...|..|.+.... ...+........+.=.+.+|+...
T Consensus 141 k~~~~~~~s~~~~~h~~~~~~ns~---~~snd~~~~~~Vgds~~Vf~y~id~~s-ey~~~~~~a~t~D~gF~~S~s~~~~ 216 (344)
T KOG4532|consen 141 KTMVVSGDSNKFAVHNQNLTQNSL---HYSNDPSWGSSVGDSRRVFRYAIDDES-EYIENIYEAPTSDHGFYNSFSENDL 216 (344)
T ss_pred eEEEEecCcccceeeccccceeee---EEcCCCceEEEecCCCcceEEEeCCcc-ceeeeeEecccCCCceeeeeccCcc
Confidence 999765322111111110112222 244666777778888999999987541 123332222224556788999999
Q ss_pred cEEEEeCCCcEEEEeCCCc-eeeee---ccccccCceEEEEEcCCCCC-EEEEEE-CCCeEEEEECcCCceeEEE
Q 017601 254 NIAVAGADRTVTIYDPRRW-SALSR---WVHCSKYEITGLSFSSIDSN-YIYVQG-VDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 254 ~lasgs~D~~v~vwD~~~~-~~~~~---~~~h~~~~v~~l~~sp~d~~-~l~s~s-~D~~i~vwd~~~~~~~~~~ 322 (369)
.+|++..||++.|||+|.. .+..+ -+.|+.+.+..+.|+| -|. -|+--+ .=+.+.+.|+++.+..+.+
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 9999999999999999983 33222 2233399999999998 333 233333 3468999999986544444
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-06 Score=81.65 Aligned_cols=209 Identities=13% Similarity=0.070 Sum_probs=112.5
Q ss_pred cceeeEEEEeecCCCCceEE-EEEec--CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 92 RSEVQSIALAETDSSGYMVL-GSVDS--YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~l-as~d~--~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
...+.+=+||||+. ...+ ..... ...||+.++..+.. ..+.... +.-...+|+|++..++.+.
T Consensus 184 ~~~~~sP~wSPDG~--~~~~~y~S~~~g~~~I~~~~l~~g~~------~~lt~~~-----g~~~~p~wSPDG~~Laf~s- 249 (428)
T PRK01029 184 HSLSITPTWMHIGS--GFPYLYVSYKLGVPKIFLGSLENPAG------KKILALQ-----GNQLMPTFSPRKKLLAFIS- 249 (428)
T ss_pred CCCcccceEccCCC--ceEEEEEEccCCCceEEEEECCCCCc------eEeecCC-----CCccceEECCCCCEEEEEE-
Confidence 34456678999852 2222 23333 34688888765421 1111110 1112578999665544433
Q ss_pred cccc----eEEEEeCCc----ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCceeeeeecc
Q 017601 169 SFSK----SIDVYDQDI----HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHRICGS 239 (369)
Q Consensus 169 s~d~----~i~lwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~~~~~ 239 (369)
..++ .+.+|+... ..+.+... ....... ..++||+..|+.+++ ++...||.+.....+.....+...
T Consensus 250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~-~~~~~~~---p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~ 325 (428)
T PRK01029 250 DRYGNPDLFIQSFSLETGAIGKPRRLLNE-AFGTQGN---PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK 325 (428)
T ss_pred CCCCCcceeEEEeecccCCCCcceEeecC-CCCCcCC---eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC
Confidence 3323 344465432 11222111 1111011 123467777887764 565556644321001233444433
Q ss_pred CCCcEEEEEECCCC-cEEEEeCC---CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC---CCeEEEEE
Q 017601 240 VGDILYAVCSSSTG-NIAVAGAD---RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV---DYEVFCGQ 312 (369)
Q Consensus 240 ~~~~v~~v~~sp~g-~lasgs~D---~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~---D~~i~vwd 312 (369)
...+...+||||| .|+..+.+ ..|.+||+.+++.. .+... ...+....|+| ||+.|+..+. ...|.+||
T Consensus 326 -~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~-~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 326 -YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTS-PENKESPSWAI-DSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred -CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCC-CCCccceEECC-CCCEEEEEECCCCCceEEEEE
Confidence 3566788999999 77665443 36899999887654 33333 34567899999 9998875443 35788889
Q ss_pred CcCCceeEEE
Q 017601 313 WRESSKVFAF 322 (369)
Q Consensus 313 ~~~~~~~~~~ 322 (369)
+..++.....
T Consensus 402 l~~g~~~~Lt 411 (428)
T PRK01029 402 LITKKTRKIV 411 (428)
T ss_pred CCCCCEEEee
Confidence 8877655444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.1e-06 Score=79.89 Aligned_cols=197 Identities=15% Similarity=0.068 Sum_probs=108.9
Q ss_pred CCccceeeEEEEeecCCCCceEEE-EEecC--CcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLG-SVDSY--GHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~la-s~d~~--g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..|...+.+.+|+||+ ..|+ +...+ ..|++|++.++.. ..+.... +.....+|+|++..++.
T Consensus 195 ~~~~~~~~~p~wSpDG----~~la~~s~~~~~~~l~~~~l~~g~~------~~l~~~~-----g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 195 LQSREPILSPRWSPDG----KRIAYVSFEQKRPRIFVQNLDTGRR------EQITNFE-----GLNGAPAWSPDGSKLAF 259 (430)
T ss_pred ecCCCceeeeeECCCC----CEEEEEEcCCCCCEEEEEECCCCCE------EEccCCC-----CCcCCeEECCCCCEEEE
Confidence 3566778899999985 3443 33332 4689999875421 1111111 11225899996654444
Q ss_pred EEecccc--eEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-C--CeEEEEeCCcccCCceeeeeecc
Q 017601 166 VARSFSK--SIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-G--CQLTIWDLRMKENGGCLHRICGS 239 (369)
Q Consensus 166 ~~~s~d~--~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d--~~v~iwD~~~~~~~~~~~~~~~~ 239 (369)
+. +.++ .|.+||... ..+.+.. +....... .++||+..++..++ + ..|.++|+.++ + ...+...
T Consensus 260 ~~-~~~g~~~Iy~~d~~~~~~~~lt~--~~~~~~~~---~~spDg~~i~f~s~~~g~~~iy~~d~~~g---~-~~~lt~~ 329 (430)
T PRK00178 260 VL-SKDGNPEIYVMDLASRQLSRVTN--HPAIDTEP---FWGKDGRTLYFTSDRGGKPQIYKVNVNGG---R-AERVTFV 329 (430)
T ss_pred EE-ccCCCceEEEEECCCCCeEEccc--CCCCcCCe---EECCCCCEEEEEECCCCCceEEEEECCCC---C-EEEeecC
Confidence 44 4454 577778753 2222221 11111111 13466777777664 3 35777787766 3 2333222
Q ss_pred CCCcEEEEEECCCC-cEEEEeC-CC--cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC---CeEEEEE
Q 017601 240 VGDILYAVCSSSTG-NIAVAGA-DR--TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD---YEVFCGQ 312 (369)
Q Consensus 240 ~~~~v~~v~~sp~g-~lasgs~-D~--~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D---~~i~vwd 312 (369)
.......+|+|+| .|+..+. ++ .|.+||+.+++.. .+.. ........|+| ||+.++..+.+ ..+.+++
T Consensus 330 -~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~--~~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 330 -GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD--TSLDESPSVAP-NGTMLIYATRQQGRGVLMLVS 404 (430)
T ss_pred -CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC--CCCCCCceECC-CCCEEEEEEecCCceEEEEEE
Confidence 1233456899999 6665543 33 5788999876542 2221 11223568999 99998877654 2466667
Q ss_pred CcC
Q 017601 313 WRE 315 (369)
Q Consensus 313 ~~~ 315 (369)
+..
T Consensus 405 ~~g 407 (430)
T PRK00178 405 ING 407 (430)
T ss_pred CCC
Confidence 643
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.4e-05 Score=68.31 Aligned_cols=262 Identities=13% Similarity=0.069 Sum_probs=145.3
Q ss_pred ccccccccCCccceeeEEEEeecCCCCceEEEEE---ecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEEC
Q 017601 81 MDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSV---DSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFS 157 (369)
Q Consensus 81 ~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~---d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (369)
.....+++..+.+..+=|+|+|+. ..|.++ +..|.+-.+.++.....+........+ ..+-+-++++
T Consensus 28 g~l~~~~~v~~~~nptyl~~~~~~----~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~------g~~p~yvsvd 97 (346)
T COG2706 28 GELSLLQLVAELGNPTYLAVNPDQ----RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP------GSPPCYVSVD 97 (346)
T ss_pred cccchhhhccccCCCceEEECCCC----CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC------CCCCeEEEEC
Confidence 334455566777888888998873 455554 235677777776432211111111111 0111469999
Q ss_pred CCCceeEEEEecccceEEEEeCCc---ceEEEEeeeCCcc-------eeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCc
Q 017601 158 PSQWSMAAVARSFSKSIDVYDQDI---HLRTLRTLWYPSS-------LNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRM 226 (369)
Q Consensus 158 p~~~~~~a~~~s~d~~i~lwd~~~---~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~ 226 (369)
+++. .+.++.-.-+.|.++-+.. .........|... -.-.++..+.|++..++++.- -..|.+|++..
T Consensus 98 ~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d 176 (346)
T COG2706 98 EDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD 176 (346)
T ss_pred CCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc
Confidence 9655 4455535678999996531 1111122222111 001222335577667776542 34799999986
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cE-EEEeCCCcEEEEeCCCc-eeeeecccc--------ccCceEEEEEcCCC
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NI-AVAGADRTVTIYDPRRW-SALSRWVHC--------SKYEITGLSFSSID 295 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~~~-~~~~~~~~h--------~~~~v~~l~~sp~d 295 (369)
+.. ..........+..-.-|.|+|++ .. +..--+++|-+|..... ..+..++.+ -....-.|..+| |
T Consensus 177 g~L-~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-d 254 (346)
T COG2706 177 GKL-TPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-D 254 (346)
T ss_pred Ccc-ccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-C
Confidence 521 11111111114667789999999 33 44556999999998762 222222211 024577899999 9
Q ss_pred CCEEEEEEC-CCeEEEEECcCC-ceeEEEE---cCCC-eeeeeEcCCCCEEEEEeCC-CcEEEEECC
Q 017601 296 SNYIYVQGV-DYEVFCGQWRES-SKVFAFR---GDSN-WLGFSKCSNRDVLGGWSDS-GSIFVADVV 355 (369)
Q Consensus 296 ~~~l~s~s~-D~~i~vwd~~~~-~~~~~~~---g~~~-~~~~~~~~d~~~l~sgs~d-g~I~iWd~~ 355 (369)
|++|+++-. ...|-++-+... ..+.... -+.. -..+...+++++|+.+.++ ..|.++...
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 999988754 347888877653 2222221 1111 0234445688888888775 578888554
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.1e-06 Score=75.52 Aligned_cols=197 Identities=13% Similarity=0.066 Sum_probs=120.9
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcc-ccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDR-LTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
..+.++.+.++ ..+|..+=..|++.-+.+....+.... ..|. .|. .-+.++-|+. ....++++ +.|
T Consensus 69 ~~~~~~~y~~e----~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~--~h~-----~~v~~~if~~-~~e~V~s~-~~d 135 (404)
T KOG1409|consen 69 SPCSAMEYVSE----SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL--AHQ-----ARVSAIVFSL-THEWVLST-GKD 135 (404)
T ss_pred CCceEeeeecc----ceEEEEEEecceEEEEEhhhhhhhcchhhhhh--hhh-----cceeeEEecC-CceeEEEe-ccc
Confidence 56778888876 367777777888887766543221111 1111 111 2244677776 44566666 677
Q ss_pred ceEEEE--eCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 172 KSIDVY--DQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 172 ~~i~lw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
+.+.-- ..+..+-.+..........+.. ...-++ ..++|.+-.+... ....+.++.++ .+.+++++
T Consensus 136 k~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~---------~~~fvGd~~gqvt~lr~~~~-~~~~i~~~~~h-~~~~~~l~ 204 (404)
T KOG1409|consen 136 KQFAWHCTESGNRLGGYNFETPASALQFDA---------LYAFVGDHSGQITMLKLEQN-GCQLITTFNGH-TGEVTCLK 204 (404)
T ss_pred cceEEEeeccCCcccceEeeccCCCCceee---------EEEEecccccceEEEEEeec-CCceEEEEcCc-ccceEEEE
Confidence 765321 1122111111111111111100 011122 2344444333221 11567778877 79999999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCce-eeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWS-ALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~-~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
|.|.. +|.+|+.|..|.+||+--.+ ....+.+| .+.|..+..-+ .-+.|.|++.|+.|.+||++.
T Consensus 205 Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh-~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 205 WDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH-NDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EcCCCcEEEeccccCceEEEeccCCcceeeeeccc-hhhhhhhhhhh-hheeeeeccCCCeEEEEeccc
Confidence 99988 99999999999999986533 34578899 88999998877 778899999999999999864
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.4e-06 Score=80.86 Aligned_cols=148 Identities=14% Similarity=0.046 Sum_probs=96.3
Q ss_pred CCCCCCcEEEEEcC---CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEE-EEeCCC--cEEEEeCCCceee
Q 017601 203 PVNGGPNMLAVTEG---CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIA-VAGADR--TVTIYDPRRWSAL 275 (369)
Q Consensus 203 ~~~~~~~lla~s~d---~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~la-sgs~D~--~v~vwD~~~~~~~ 275 (369)
++||+..|+.++.+ ..|.+||+.++ ... .+... .+.+.+.+|+||| .|+ +.+.++ .|.+||+.+++.
T Consensus 206 wSpDG~~la~~s~~~~~~~l~~~~l~~g---~~~-~l~~~-~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~- 279 (430)
T PRK00178 206 WSPDGKRIAYVSFEQKRPRIFVQNLDTG---RRE-QITNF-EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL- 279 (430)
T ss_pred ECCCCCEEEEEEcCCCCCEEEEEECCCC---CEE-EccCC-CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-
Confidence 34677788777643 46999999877 332 22221 2445678999999 665 455555 588889987654
Q ss_pred eeccccccCceEEEEEcCCCCCEEEEEEC-CC--eEEEEECcCCceeEEE-EcCCCeeeeeEcCCCCEEEEEeCC-C--c
Q 017601 276 SRWVHCSKYEITGLSFSSIDSNYIYVQGV-DY--EVFCGQWRESSKVFAF-RGDSNWLGFSKCSNRDVLGGWSDS-G--S 348 (369)
Q Consensus 276 ~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~--~i~vwd~~~~~~~~~~-~g~~~~~~~~~~~d~~~l~sgs~d-g--~ 348 (369)
..+..+ ........|+| |++.|+..+. ++ .|+++|+.+++..... .+... .....++||+.|+-.+.+ + .
T Consensus 280 ~~lt~~-~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~-~~~~~Spdg~~i~~~~~~~~~~~ 356 (430)
T PRK00178 280 SRVTNH-PAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN-ARPRLSADGKTLVMVHRQDGNFH 356 (430)
T ss_pred EEcccC-CCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc-cceEECCCCCEEEEEEccCCceE
Confidence 345555 56677889999 9998776654 33 6778888776644332 23221 123346788888766643 3 5
Q ss_pred EEEEECCCCcc
Q 017601 349 IFVADVVAKEN 359 (369)
Q Consensus 349 I~iWd~~~~~~ 359 (369)
|.+||+.+++.
T Consensus 357 l~~~dl~tg~~ 367 (430)
T PRK00178 357 VAAQDLQRGSV 367 (430)
T ss_pred EEEEECCCCCE
Confidence 88899988754
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=84.59 Aligned_cols=145 Identities=12% Similarity=0.148 Sum_probs=103.1
Q ss_pred cccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc--CCceeeeeeccCCCcEE
Q 017601 169 SFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE--NGGCLHRICGSVGDILY 245 (369)
Q Consensus 169 s~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~--~~~~~~~~~~~~~~~v~ 245 (369)
+.+..|-|-|+. .+.+.+.+....-+..|.. .++.+..+...|.|..+|+|.+. ++.+.+.+-|. ..|+
T Consensus 231 G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~------s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~--Ssvt 302 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQQSFQSKSDVFALQFAG------SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD--SSVT 302 (425)
T ss_pred cccceeEEEEeecccccccccchhHHHHHhcc------cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC--cchh
Confidence 456667777764 3334443333333333433 24577778889999999999763 23577778776 8899
Q ss_pred EEEECC-CC-cEEEEeCCCcEEEEeCCCcee---eeeccccccCceEE--EEEcCCCCCEEEEEECCCeEEEEECcCCce
Q 017601 246 AVCSSS-TG-NIAVAGADRTVTIYDPRRWSA---LSRWVHCSKYEITG--LSFSSIDSNYIYVQGVDYEVFCGQWRESSK 318 (369)
Q Consensus 246 ~v~~sp-~g-~lasgs~D~~v~vwD~~~~~~---~~~~~~h~~~~v~~--l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~ 318 (369)
++..-. ++ .|.+.+.+|+|++||.|--++ +.++.|| -..-.- +...+ ....++++|.|...|||.++.+.+
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH-vN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH-VNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc-ccccccccccccc-ccceEEEccCeeEEEEEecccCce
Confidence 986655 44 788888999999999997655 8999999 333222 23455 667888999999999999999888
Q ss_pred eEEEE
Q 017601 319 VFAFR 323 (369)
Q Consensus 319 ~~~~~ 323 (369)
+.++.
T Consensus 381 l~tip 385 (425)
T KOG2695|consen 381 LCTIP 385 (425)
T ss_pred eeccC
Confidence 77764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-05 Score=78.20 Aligned_cols=189 Identities=11% Similarity=0.012 Sum_probs=105.2
Q ss_pred eEEEECCCCceeEEEEecccc--eEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEE-EcCC--eEEEEeCC
Q 017601 152 SGLCFSPSQWSMAAVARSFSK--SIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAV-TEGC--QLTIWDLR 225 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~--~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~-s~d~--~v~iwD~~ 225 (369)
...+|+|++.. ++.....++ .|.+||... ..+.+...... ... ..++||+..|+.+ +.++ .|.+||+.
T Consensus 221 ~~p~wSPDG~~-La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~--~~~---~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 221 MSPAWSPDGRK-LAYVSFENRKAEIFVQDIYTQVREKVTSFPGI--NGA---PRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred cCceECCCCCE-EEEEEecCCCcEEEEEECCCCCeEEecCCCCC--cCC---eeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 36899996654 444423343 477778643 22222221111 111 1234677777654 4455 47778887
Q ss_pred cccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CC--cEEEEeCCCceeee-eccccccCceEEEEEcCCCCCEEE
Q 017601 226 MKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DR--TVTIYDPRRWSALS-RWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~--~v~vwD~~~~~~~~-~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
++ + +..+..+ .......+|+||| .|+..+. ++ .|.++|+.+++... ++.++ .....+|+| ||++|+
T Consensus 295 tg---~-~~~lt~~-~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~---~~~~~~~Sp-DG~~l~ 365 (448)
T PRK04792 295 TK---A-LTRITRH-RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE---QNLGGSITP-DGRSMI 365 (448)
T ss_pred CC---C-eEECccC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC---CCcCeeECC-CCCEEE
Confidence 66 3 3333333 2456778999999 6655443 44 46666877665433 23333 345679999 999987
Q ss_pred EEECC-C--eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeC-CCc--EEEEECCC
Q 017601 301 VQGVD-Y--EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSD-SGS--IFVADVVA 356 (369)
Q Consensus 301 s~s~D-~--~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~-dg~--I~iWd~~~ 356 (369)
..+.+ + .|.++|+.+++......+... .....++||+.|+-.+. ++. +++++...
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d-~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQVLTSTRLD-ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred EEEecCCceEEEEEECCCCCeEEccCCCCC-CCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 76653 3 456678777654332222110 12234678887665444 443 67777743
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.6e-06 Score=79.52 Aligned_cols=147 Identities=16% Similarity=0.116 Sum_probs=93.0
Q ss_pred CCCCCCcEEEEEc-C--CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEE-EEeCCCc--EEEEeCCCceee
Q 017601 203 PVNGGPNMLAVTE-G--CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIA-VAGADRT--VTIYDPRRWSAL 275 (369)
Q Consensus 203 ~~~~~~~lla~s~-d--~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~la-sgs~D~~--v~vwD~~~~~~~ 275 (369)
++||+..|+.++. + ..|.+||+.++ +.. .+... .....+.+|+||| .|+ +.+.++. |.+||+.+++.
T Consensus 225 wSPDG~~La~~s~~~g~~~L~~~dl~tg---~~~-~lt~~-~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~- 298 (448)
T PRK04792 225 WSPDGRKLAYVSFENRKAEIFVQDIYTQ---VRE-KVTSF-PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL- 298 (448)
T ss_pred ECCCCCEEEEEEecCCCcEEEEEECCCC---CeE-EecCC-CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-
Confidence 3467777877654 2 36889999876 322 22211 1334578999999 565 4566675 77778877654
Q ss_pred eeccccccCceEEEEEcCCCCCEEEEEEC-CC--eEEEEECcCCceeEE-EEcCCCeeeeeEcCCCCEEEEEeC-CC--c
Q 017601 276 SRWVHCSKYEITGLSFSSIDSNYIYVQGV-DY--EVFCGQWRESSKVFA-FRGDSNWLGFSKCSNRDVLGGWSD-SG--S 348 (369)
Q Consensus 276 ~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~--~i~vwd~~~~~~~~~-~~g~~~~~~~~~~~d~~~l~sgs~-dg--~ 348 (369)
..+..+ ........|+| |++.|+..+. ++ .|.++|+.+++.... +.++.. .....++||++|+-.+. ++ .
T Consensus 299 ~~lt~~-~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~-~~~~~SpDG~~l~~~~~~~g~~~ 375 (448)
T PRK04792 299 TRITRH-RAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN-LGGSITPDGRSMIMVNRTNGKFN 375 (448)
T ss_pred EECccC-CCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC-cCeeECCCCCEEEEEEecCCceE
Confidence 445555 56678899999 9998876654 33 577778777664433 333331 12344679988776555 44 4
Q ss_pred EEEEECCCCc
Q 017601 349 IFVADVVAKE 358 (369)
Q Consensus 349 I~iWd~~~~~ 358 (369)
|.++|+.+++
T Consensus 376 I~~~dl~~g~ 385 (448)
T PRK04792 376 IARQDLETGA 385 (448)
T ss_pred EEEEECCCCC
Confidence 5567877765
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-07 Score=98.26 Aligned_cols=218 Identities=9% Similarity=0.129 Sum_probs=136.9
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
..|.++.=.|. ...-.+++.+|.+.+|....+.. ...+...+. .-++.+.|+.+++ .+.++ -.||
T Consensus 2209 ~~v~r~~sHp~----~~~Yltgs~dgsv~~~~w~~~~~---v~~~rt~g~------s~vtr~~f~~qGn-k~~i~-d~dg 2273 (2439)
T KOG1064|consen 2209 ENVRRMTSHPS----DPYYLTGSQDGSVRMFEWGHGQQ---VVCFRTAGN------SRVTRSRFNHQGN-KFGIV-DGDG 2273 (2439)
T ss_pred CceeeecCCCC----CceEEecCCCceEEEEeccCCCe---EEEeeccCc------chhhhhhhcccCC-ceeee-ccCC
Confidence 44555555553 24555677888888887764411 111111111 1134678888554 55665 6799
Q ss_pred eEEEEeCCc-ceEEEEeee-CCcceeeeccCCCCCCCCcEEEE---EcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 173 SIDVYDQDI-HLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAV---TEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 173 ~i~lwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~---s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
.+.+|.... .....+... .-..+.|+. ..++++ ++++.+.+||.--......++ ..|. +.++++
T Consensus 2274 ~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--------s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~--~gaT~l 2342 (2439)
T KOG1064|consen 2274 DLSLWQASPKPYTSWQCHNKALSDFRFIG--------SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHD--GGATVL 2342 (2439)
T ss_pred ceeecccCCcceeccccCCccccceeeee--------hhhhccccCCCCCcccchhcccCcccceee-eecC--CCceEE
Confidence 999998763 222221110 112334443 234443 357899999987554445566 3344 889999
Q ss_pred EECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 248 CSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
++-|.. .|++||.+|-|++||+|..+..++++. +. ...++++++..|.++||++.....+++|.+..
T Consensus 2343 ~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh--hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 999999 999999999999999998887777664 11 34689999999999999999877777775421
Q ss_pred CeeeeeE-------cCCCCEEEEEeCCCc
Q 017601 327 NWLGFSK-------CSNRDVLGGWSDSGS 348 (369)
Q Consensus 327 ~~~~~~~-------~~d~~~l~sgs~dg~ 348 (369)
.-.++.. .-....|++++.||+
T Consensus 2411 ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2411 AKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred cccchhhhcCceeeeccCceEEEecCCCC
Confidence 1123311 113456777777763
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0001 Score=68.45 Aligned_cols=199 Identities=10% Similarity=0.084 Sum_probs=117.2
Q ss_pred EEEECCCCceeEEEEec---------ccceEEEEeCCc--ceEEEEeeeCCc--ceeeeccCCCCCCCCcEEEEE-c-CC
Q 017601 153 GLCFSPSQWSMAAVARS---------FSKSIDVYDQDI--HLRTLRTLWYPS--SLNFVQNLSPVNGGPNMLAVT-E-GC 217 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s---------~d~~i~lwd~~~--~~~~~~~~~~~~--~v~~~~~~~~~~~~~~lla~s-~-d~ 217 (369)
++ ++|++..+++++ + .+..|.+||... .+..+..-..|. ....-....+++||..++... + +.
T Consensus 51 ~~-~spDg~~lyva~-~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~ 128 (352)
T TIGR02658 51 PV-VASDGSFFAHAS-TVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSP 128 (352)
T ss_pred ee-ECCCCCEEEEEe-ccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCC
Confidence 44 999666555544 7 688999999863 333343211111 011111112335565555444 3 78
Q ss_pred eEEEEeCCcccCCceeeeeeccCCC------------------------------cEEEE--------------EECC-C
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGD------------------------------ILYAV--------------CSSS-T 252 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~------------------------------~v~~v--------------~~sp-~ 252 (369)
.|.+.|+.++ +.+..+...... .+... .|++ +
T Consensus 129 ~V~VvD~~~~---kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~d 205 (352)
T TIGR02658 129 AVGVVDLEGK---AFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKS 205 (352)
T ss_pred EEEEEECCCC---cEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCC
Confidence 8999999876 444433211000 01111 1223 6
Q ss_pred C-cEEEEeCCCcEEEEeCCC-----ceeeeecccc------ccCceEEEEEcCCCCCEEEEEE----------CCCeEEE
Q 017601 253 G-NIAVAGADRTVTIYDPRR-----WSALSRWVHC------SKYEITGLSFSSIDSNYIYVQG----------VDYEVFC 310 (369)
Q Consensus 253 g-~lasgs~D~~v~vwD~~~-----~~~~~~~~~h------~~~~v~~l~~sp~d~~~l~s~s----------~D~~i~v 310 (369)
| ++.+..+ |+|.+.|+.. .+....+... ....+.-++++| +++.+.... ..++|.+
T Consensus 206 g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 206 GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCCCCEEEE
Confidence 6 5544444 9999999543 3333322211 022334499999 888877743 1258999
Q ss_pred EECcCCceeEEEE-cCCCeeeeeEcCCCC-EEEEEe-CCCcEEEEECCCCcc
Q 017601 311 GQWRESSKVFAFR-GDSNWLGFSKCSNRD-VLGGWS-DSGSIFVADVVAKEN 359 (369)
Q Consensus 311 wd~~~~~~~~~~~-g~~~~~~~~~~~d~~-~l~sgs-~dg~I~iWd~~~~~~ 359 (369)
+|..+.+.+..+. |+. ..++..++|++ +|+..+ .++.|.+.|+++++.
T Consensus 284 iD~~t~kvi~~i~vG~~-~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 284 VDAKTGKRLRKIELGHE-IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EECCCCeEEEEEeCCCc-eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 9999999888876 443 34677788998 888777 578999999998864
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-07 Score=87.93 Aligned_cols=199 Identities=15% Similarity=0.175 Sum_probs=129.4
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeee--CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLW--YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
++..+.++|.+..+ |.+ +.-+ +.+.|.+......+.+. .+-.+...++.+....+..+++ .....-.+|++...
T Consensus 26 ~~~a~si~p~grdi-~lA-sr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDI-VLA-SRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS-TSNQKAIIWNLAKS 101 (1081)
T ss_pred cccceeeccccchh-hhh-hhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe-cCcchhhhhhhhcC
Confidence 34467888865544 444 2222 34445543222222222 2334555555554443334444 34456679999865
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
.+...-..+.+| +..|+.+-|+|+. .+|+++.|-.|..||+|+ -.++..+..- ...-+.|.|+-.++..+|+ +.
T Consensus 102 s~~aIef~lhgh-sraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w-~s~asqVkwnyk~p~vlas-sh 178 (1081)
T KOG0309|consen 102 SSNAIEFVLHGH-SRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW-RSAASQVKWNYKDPNVLAS-SH 178 (1081)
T ss_pred CccceEEEEecC-ccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc-cccCceeeecccCcchhhh-cc
Confidence 332322334444 7889999999998 999999999999999998 4566666554 4667889999877777765 56
Q ss_pred CCeEEEEECcCC-ceeEEEEcCCCeeeeeEcC----CCCEEEEEeCCCcEEEEECCCC
Q 017601 305 DYEVFCGQWRES-SKVFAFRGDSNWLGFSKCS----NRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 305 D~~i~vwd~~~~-~~~~~~~g~~~~~~~~~~~----d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.+.|++||.+.+ ..+..+++|. ..+.... -...+.+.+.||+|++||....
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~v--s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHV--SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred CCceEEEeccCCCcceEEecccc--eeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 778999999874 5778888876 3222211 3456889999999999997653
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-07 Score=57.30 Aligned_cols=37 Identities=22% Similarity=0.478 Sum_probs=34.3
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEe
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYD 268 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD 268 (369)
++++.+.+| ...|++++|+|++ .|++|+.|++|++||
T Consensus 2 ~~~~~~~~h-~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGH-SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESS-SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCC-CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 577888877 8999999999999 999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.2e-06 Score=74.14 Aligned_cols=244 Identities=12% Similarity=0.076 Sum_probs=137.0
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+|.+.|++...-|.+ .-+.+.+.+.++++|--....+ .-...+...|. +.+.+++++ ....+.++
T Consensus 21 eG~~d~vn~~~l~~~e----~gv~~~s~drtvrv~lkrds~q-~wpsI~~~mP~-------~~~~~~y~~-e~~~L~vg- 86 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKE----EGVISVSEDRTVRVWLKRDSGQ-YWPSIYHYMPS-------PCSAMEYVS-ESRRLYVG- 86 (404)
T ss_pred cCchhhhhhheeccCC----CCeEEccccceeeeEEeccccc-cCchhhhhCCC-------CceEeeeec-cceEEEEE-
Confidence 4888889887776653 2344455556777775432211 00111222221 234677777 45566666
Q ss_pred cccceEEEEeCCcceEEE---Ee-eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 169 SFSKSIDVYDQDIHLRTL---RT-LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
...+++.-+........+ +. ..|...+.-+ .++.....+++.+.|..+.---.+.+ ..+..+.-. ..-
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~---if~~~~e~V~s~~~dk~~~~hc~e~~---~~lg~Y~~~--~~~ 158 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAI---VFSLTHEWVLSTGKDKQFAWHCTESG---NRLGGYNFE--TPA 158 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeE---EecCCceeEEEeccccceEEEeeccC---CcccceEee--ccC
Confidence 788888877543111111 11 1111111111 11112357788887776654444443 222111100 000
Q ss_pred EEEEECCCCcEEEEeCCCcEEEE--eCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc-eeEE
Q 017601 245 YAVCSSSTGNIAVAGADRTVTIY--DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS-KVFA 321 (369)
Q Consensus 245 ~~v~~sp~g~lasgs~D~~v~vw--D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~-~~~~ 321 (369)
.++.|.-. ....|...+.|.+- +...-.++.++.+| .++++++.|.| ....|.|++.|..+.+||+...+ ....
T Consensus 159 t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h-~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 159 SALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGH-TGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYE 235 (404)
T ss_pred CCCceeeE-EEEecccccceEEEEEeecCCceEEEEcCc-ccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeee
Confidence 00000000 33444445554443 33456778899999 99999999999 88999999999999999997543 3344
Q ss_pred EEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 322 FRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 322 ~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.||. ..+.. ..--..++|+++||.|.+||++..+.
T Consensus 236 l~gh~--~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 236 LQGHN--DKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred eccch--hhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 55665 22222 23557899999999999999987654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-05 Score=76.46 Aligned_cols=293 Identities=13% Similarity=0.089 Sum_probs=162.8
Q ss_pred ceeEEEecCCCceEEEEEEeCCeEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccceeeEEEEeecCC----
Q 017601 30 TRLALHVNEDGCSCFVYIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDS---- 105 (369)
Q Consensus 30 ~r~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~---- 105 (369)
+|-|+.-+++| .+..+++..|..++. + ..+ .+-..-.|+..|++++|+|-..
T Consensus 17 N~~A~Dw~~~G---LiAygshslV~VVDs---------------~-----s~q-~iqsie~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 17 NRNAADWSPSG---LIAYGSHSLVSVVDS---------------R-----SLQ-LIQSIELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred cccccccCccc---eEEEecCceEEEEeh---------------h-----hhh-hhhccccCccceeEEEeccCCCchhc
Confidence 35566666777 556677777766661 0 010 1111335789999999988431
Q ss_pred ----CCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC--Cc-eeEEEEecccceEEEEe
Q 017601 106 ----SGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS--QW-SMAAVARSFSKSIDVYD 178 (369)
Q Consensus 106 ----~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~--~~-~~~a~~~s~d~~i~lwd 178 (369)
....+||++|..|+|.+||...... .-.++++...+. .++|-|. +. ..+++- ....++.+|+
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~-----~~~l~~~~~~~q-----dl~W~~~rd~Srd~LlaI-h~ss~lvLwn 141 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASV-----INWLSHSNDSVQ-----DLCWVPARDDSRDVLLAI-HGSSTLVLWN 141 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhh-----hhhhcCCCcchh-----heeeeeccCcchheeEEe-cCCcEEEEEE
Confidence 1357899999999999999875521 112233333222 3555442 22 334443 4567899997
Q ss_pred CCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeC-CcccCCceeeeee---ccC--------------
Q 017601 179 QDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDL-RMKENGGCLHRIC---GSV-------------- 240 (369)
Q Consensus 179 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~-~~~~~~~~~~~~~---~~~-------------- 240 (369)
.+...+-.+....+..+..+..-||++ ..+..-+..|.+.+-+. ...+...+.+.++ .+.
T Consensus 142 tdtG~k~Wk~~ys~~iLs~f~~DPfd~--rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns 219 (1062)
T KOG1912|consen 142 TDTGEKFWKYDYSHEILSCFRVDPFDS--RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNS 219 (1062)
T ss_pred ccCCceeeccccCCcceeeeeeCCCCc--ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcccc
Confidence 654333333333334444455555654 34444444455544433 2222212222211 100
Q ss_pred --C------CcEEE--EEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCC--EEEEEECCCe
Q 017601 241 --G------DILYA--VCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSN--YIYVQGVDYE 307 (369)
Q Consensus 241 --~------~~v~~--v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~--~l~s~s~D~~ 307 (369)
. -..|| ++|+|.- .+.-..--+-+.|+|++-..++....-. .+.+.-+.+-| +++ .|...-.||.
T Consensus 220 ~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie-r~~akfv~vlP-~~~rd~LfclH~nG~ 297 (1062)
T KOG1912|consen 220 TTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE-RGGAKFVDVLP-DPRRDALFCLHSNGR 297 (1062)
T ss_pred ccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec-cCCcceeEecc-CCCcceEEEEecCCe
Confidence 0 01122 3577776 4444445677999999988888877655 66667777777 654 5888889999
Q ss_pred EEEEECcC----------------CceeEEEEcCCCeeee--eEcC-CCCEEEEEeCCCcEEEEECCCCcchh
Q 017601 308 VFCGQWRE----------------SSKVFAFRGDSNWLGF--SKCS-NRDVLGGWSDSGSIFVADVVAKENEI 361 (369)
Q Consensus 308 i~vwd~~~----------------~~~~~~~~g~~~~~~~--~~~~-d~~~l~sgs~dg~I~iWd~~~~~~~~ 361 (369)
+.+|--+. ++....++.......+ ..|| +...++---.+|.+.+|.+++++...
T Consensus 298 ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~ 370 (1062)
T KOG1912|consen 298 LTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHL 370 (1062)
T ss_pred EEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCc
Confidence 99996654 1222222221111111 1244 35556656678889999999876543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00014 Score=69.78 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=84.1
Q ss_pred EEeeeCCcceeeeccCCCCCCCCcEEEEE----cCCe----EEEEeCCcccCCceee--eeeccCCCcEEEEEECCCC-c
Q 017601 186 LRTLWYPSSLNFVQNLSPVNGGPNMLAVT----EGCQ----LTIWDLRMKENGGCLH--RICGSVGDILYAVCSSSTG-N 254 (369)
Q Consensus 186 ~~~~~~~~~v~~~~~~~~~~~~~~lla~s----~d~~----v~iwD~~~~~~~~~~~--~~~~~~~~~v~~v~~sp~g-~ 254 (369)
+++...|-.+.|... ++..+.++. .+|. -.+|+.... +.+++. ++.. ...|.|++++|+. .
T Consensus 202 irTE~dPl~~~Fs~~-----~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~-klqrvsvtsipL--~s~v~~ca~sp~E~k 273 (545)
T PF11768_consen 202 IRTENDPLDVEFSLN-----QPYQIHTVEQSISVKGEPSADSCIYECSRN-KLQRVSVTSIPL--PSQVICCARSPSEDK 273 (545)
T ss_pred EEecCCcEEEEccCC-----CCcEEEEEEEecCCCCCceeEEEEEEeecC-ceeEEEEEEEec--CCcceEEecCcccce
Confidence 344456666666542 345666642 3442 456777543 223333 3333 4889999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 255 IAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 255 lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
++.|..||+|.+||..++... +..+ .-..+.++|+| +|..+++|+.-|.+.+||+.-
T Consensus 274 LvlGC~DgSiiLyD~~~~~t~--~~ka-~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 274 LVLGCEDGSIILYDTTRGVTL--LAKA-EFIPTLIAWHP-DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEecCCeEEEEEcCCCeee--eeee-cccceEEEEcC-CCcEEEEEcCCceEEEEEeec
Confidence 999999999999998776433 3334 56688999999 999999999999999999865
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.9e-05 Score=71.66 Aligned_cols=183 Identities=16% Similarity=0.066 Sum_probs=106.0
Q ss_pred eEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc-
Q 017601 163 MAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS- 239 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~- 239 (369)
.+.++ ..++.+..||.. +.+.............. ...|.- .++.++.+..++.+..+|.+++ +.+-+....
T Consensus 147 ~v~v~-~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~-~~sp~~-~~~~v~~~~~~g~v~ald~~tG---~~~W~~~~~~ 220 (377)
T TIGR03300 147 LVVVR-TNDGRLTALDAATGERLWTYSRVTPALTLRG-SASPVI-ADGGVLVGFAGGKLVALDLQTG---QPLWEQRVAL 220 (377)
T ss_pred EEEEE-CCCCeEEEEEcCCCceeeEEccCCCceeecC-CCCCEE-ECCEEEEECCCCEEEEEEccCC---CEeeeecccc
Confidence 44555 678889999874 33332221111000000 001111 1346677778899999999888 443322110
Q ss_pred -CC-Cc---EEEEEEC---CCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 240 -VG-DI---LYAVCSS---STGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 240 -~~-~~---v~~v~~s---p~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
.. .. ...+.-+ .++.+..++.++.+..||.++++.+-..... . ..... . ++..++.++.|+.+..+
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~-~~~p~--~-~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--S-YQGPA--V-DDNRLYVTDADGVVVAL 294 (377)
T ss_pred CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--C-ccCce--E-eCCEEEEECCCCeEEEE
Confidence 00 00 0011111 1347777888999999999998776544421 1 11222 2 45778888899999999
Q ss_pred ECcCCceeEEEEcCCCeeeeeEcC--CCCEEEEEeCCCcEEEEECCCCcc
Q 017601 312 QWRESSKVFAFRGDSNWLGFSKCS--NRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 312 d~~~~~~~~~~~g~~~~~~~~~~~--d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
|..+++.+-.+.... ......+ .+..|+.++.+|.|+++|..+++.
T Consensus 295 d~~tG~~~W~~~~~~--~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 295 DRRSGSELWKNDELK--YRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred ECCCCcEEEcccccc--CCccccCEEECCEEEEEeCCCEEEEEECCCCCE
Confidence 999987765442211 0111112 567899999999999999988864
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00018 Score=63.20 Aligned_cols=171 Identities=14% Similarity=0.111 Sum_probs=106.4
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCC-cceEEEEeee--------CCcceeeeccCCCCCC-CCcEEEEEcCCe
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLW--------YPSSLNFVQNLSPVNG-GPNMLAVTEGCQ 218 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~--------~~~~v~~~~~~~~~~~-~~~lla~s~d~~ 218 (369)
..|.-++||| +..++|.+ ...|+|++||.- .....+.... ....+.|..... +++ ...|++...+|.
T Consensus 44 PQWRkl~WSp-D~tlLa~a-~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~-s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 44 PQWRKLAWSP-DCTLLAYA-ESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKK-SAQWSYELLVINYRGQ 120 (282)
T ss_pred chheEEEECC-CCcEEEEE-cCCCeEEEEecccceeEEcCcccccCCccccceeeeEeecccc-ccccceeEEEEeccce
Confidence 3488999999 56788888 788999999974 3333332111 112233444321 111 236888888888
Q ss_pred EEEEeCCc--ccCCceeeeee--ccCCCcEEEEEECCCC-cEEEEeC-CCc----------EEEEeCCCceee-------
Q 017601 219 LTIWDLRM--KENGGCLHRIC--GSVGDILYAVCSSSTG-NIAVAGA-DRT----------VTIYDPRRWSAL------- 275 (369)
Q Consensus 219 v~iwD~~~--~~~~~~~~~~~--~~~~~~v~~v~~sp~g-~lasgs~-D~~----------v~vwD~~~~~~~------- 275 (369)
++=|=+.. .+.-+.-+.+. .++...|+++.|+|.- +|++||. ... +..|-+-++.+-
T Consensus 121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~ 200 (282)
T PF15492_consen 121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSS 200 (282)
T ss_pred eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcccc
Confidence 88776532 22223333433 2335789999999997 5555543 222 444543321110
Q ss_pred ----------------ee-----ccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 276 ----------------SR-----WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 276 ----------------~~-----~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
.. ..+...+.|..+..|| ||+.||+...+|.|.+|++..-++.+.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 201 EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CccccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 00 0122256799999999 99999999999999999998866666554
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.6e-05 Score=71.20 Aligned_cols=200 Identities=13% Similarity=0.134 Sum_probs=122.2
Q ss_pred CccceeeEEEEeecCCCCceEEEE-----EecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGS-----VDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las-----~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
-|...|..+.+||.. ....+|. .+.-+.|++|.+.............+- ...-....|++.+..+|
T Consensus 163 l~~~~i~~f~lSpgp--~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-------kadkvqm~WN~~gt~LL 233 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGP--EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-------KADKVQMKWNKLGTALL 233 (566)
T ss_pred eeccceeeEEecCCC--CCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-------ccceeEEEeccCCceEE
Confidence 355677888888852 2344544 344557888877633211111111100 00112467777666665
Q ss_pred EEEe-cccc---------eEEEEeCCcceEEEEee--eCCcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCC
Q 017601 165 AVAR-SFSK---------SIDVYDQDIHLRTLRTL--WYPSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENG 230 (369)
Q Consensus 165 a~~~-s~d~---------~i~lwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~ 230 (369)
+.+. --|+ ++.++++......+... ....++.|. +++..++++- .-.++.|||++.
T Consensus 234 vLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~------~s~~EF~VvyGfMPAkvtifnlr~---- 303 (566)
T KOG2315|consen 234 VLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWS------PSGREFAVVYGFMPAKVTIFNLRG---- 303 (566)
T ss_pred EEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEEC------CCCCEEEEEEecccceEEEEcCCC----
Confidence 5542 2344 46666655333333222 122334443 3455666654 356899999985
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEEEe---CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE---
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAVAG---ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG--- 303 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~lasgs---~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s--- 303 (369)
.++..+ + .++=+++-|+|.| +|+.++ --|.+-|||+.+.+++..+... ..+-+.|+| ||++++++.
T Consensus 304 ~~v~df-~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~P-dGe~flTATTaP 376 (566)
T KOG2315|consen 304 KPVFDF-P--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSP-DGEYFLTATTAP 376 (566)
T ss_pred CEeEeC-C--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC---CceEEEEcC-CCcEEEEEeccc
Confidence 355544 2 3778899999999 665554 4678999999998888888754 346689999 999999876
Q ss_pred ---CCCeEEEEECcC
Q 017601 304 ---VDYEVFCGQWRE 315 (369)
Q Consensus 304 ---~D~~i~vwd~~~ 315 (369)
.|+.++||+...
T Consensus 377 RlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYTG 391 (566)
T ss_pred cEEecCCeEEEEecC
Confidence 378899999754
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00018 Score=63.47 Aligned_cols=179 Identities=18% Similarity=0.115 Sum_probs=109.2
Q ss_pred eEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee-ecc
Q 017601 163 MAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI-CGS 239 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~-~~~ 239 (369)
.+.++ +.++.+..||.. +.+..... ..+....... +++.++.++.++.+..+|.+++ +.+-.. ...
T Consensus 38 ~v~~~-~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~------~~~~v~v~~~~~~l~~~d~~tG---~~~W~~~~~~ 106 (238)
T PF13360_consen 38 RVYVA-SGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV------DGGRVYVGTSDGSLYALDAKTG---KVLWSIYLTS 106 (238)
T ss_dssp EEEEE-ETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE------ETTEEEEEETTSEEEEEETTTS---CEEEEEEE-S
T ss_pred EEEEE-cCCCEEEEEECCCCCEEEEeec-cccccceeee------cccccccccceeeeEecccCCc---ceeeeecccc
Confidence 45555 688999999973 33433332 2221111111 2567777778889999999998 555542 211
Q ss_pred C--CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCc----------e-EEEEEcCCCCCEEEEEECC
Q 017601 240 V--GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYE----------I-TGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 240 ~--~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~----------v-~~l~~sp~d~~~l~s~s~D 305 (369)
. ...........++ .++.+..++.|..+|+++|+.+-..... ... + ..+.+. ++ .+..++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~ 182 (238)
T PF13360_consen 107 SPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVIS--DG-RVYVSSGD 182 (238)
T ss_dssp SCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEECC--TT-EEEEECCT
T ss_pred ccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEEE--CC-EEEEEcCC
Confidence 0 0111122222235 8888888999999999999997766544 322 1 233333 34 66777777
Q ss_pred Ce-EEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 306 YE-VFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 306 ~~-i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+. +.+ |+.+++.+-...-+. .......++..|+.++.++.|..||+++|+.
T Consensus 183 g~~~~~-d~~tg~~~w~~~~~~--~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 183 GRVVAV-DLATGEKLWSKPISG--IYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SSEEEE-ETTTTEEEEEECSS---ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CeEEEE-ECCCCCEEEEecCCC--ccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 75 555 999988654333111 1111234778888888999999999999874
|
... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00041 Score=72.90 Aligned_cols=196 Identities=14% Similarity=0.108 Sum_probs=110.7
Q ss_pred eEEEECCCCceeEEEEecc------cceEEEEeCCcceEEEEeeeCCcce-eeeccCCCCCCCCcEEEEEc---CCeEEE
Q 017601 152 SGLCFSPSQWSMAAVARSF------SKSIDVYDQDIHLRTLRTLWYPSSL-NFVQNLSPVNGGPNMLAVTE---GCQLTI 221 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~------d~~i~lwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~lla~s~---d~~v~i 221 (369)
..++|.. ++.++|++ +. -..+++|+-+..+..... ....+ ..+.| .|.|+.+++.-. ...|.+
T Consensus 213 ~~ISWRG-DG~yFAVs-s~~~~~~~~R~iRVy~ReG~L~stSE--~v~gLe~~l~W---rPsG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 213 VRISWRG-DGEYFAVS-SVEPETGSRRVIRVYSREGELQSTSE--PVDGLEGALSW---RPSGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred eEEEECC-CCcEEEEE-EEEcCCCceeEEEEECCCceEEeccc--cCCCccCCccC---CCCCCEEEEEEEcCCCcEEEE
Confidence 3688988 45577776 33 267999987643332211 11111 11222 244444444332 356777
Q ss_pred EeCCcccC-CceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc--eeeeeccccccCceEEEEEcCCCCC
Q 017601 222 WDLRMKEN-GGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW--SALSRWVHCSKYEITGLSFSSIDSN 297 (369)
Q Consensus 222 wD~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~--~~~~~~~~h~~~~v~~l~~sp~d~~ 297 (369)
|. |.|.+ +.-.-++... ...|..++|++|+ .||.--.|. |.+|-..+. -..+.+.-.....+..+.|+|.++.
T Consensus 286 fE-rNGLrhgeF~l~~~~~-~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 286 FE-RNGLRHGEFTLRFDPE-EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred Ee-cCCcEeeeEecCCCCC-CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence 76 33321 1111112122 4789999999999 888866555 999998883 3344444221344566999997788
Q ss_pred EEEEEECCCeEEEEECc----CC--------ceeEEEEcC------------------------CCeeeeeEcCCCCEEE
Q 017601 298 YIYVQGVDYEVFCGQWR----ES--------SKVFAFRGD------------------------SNWLGFSKCSNRDVLG 341 (369)
Q Consensus 298 ~l~s~s~D~~i~vwd~~----~~--------~~~~~~~g~------------------------~~~~~~~~~~d~~~l~ 341 (369)
.|.....++.+..+++. .+ ..+....|. .....+...+++..++
T Consensus 363 ~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~a 442 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFA 442 (928)
T ss_pred EEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEE
Confidence 78887776766554432 11 112222222 1112222233666699
Q ss_pred EEeCCCcEEEEECCCC
Q 017601 342 GWSDSGSIFVADVVAK 357 (369)
Q Consensus 342 sgs~dg~I~iWd~~~~ 357 (369)
.-..||.|.+|....+
T Consensus 443 vl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 443 VLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEECCCCEEEEEecCC
Confidence 9999999999985543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-06 Score=81.87 Aligned_cols=182 Identities=12% Similarity=0.062 Sum_probs=118.4
Q ss_pred CceeEEEEecccceEEEEeCCc---------ceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC
Q 017601 160 QWSMAAVARSFSKSIDVYDQDI---------HLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN 229 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~---------~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~ 229 (369)
+++-++++ |.|++|++|.+.. +..+++.+. ....+.|+. +.+. .++-|+.+.+||.-.+
T Consensus 746 NENSFiSA-SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-------~lr~-i~ScD~giHlWDPFig-- 814 (1034)
T KOG4190|consen 746 NENSFISA-SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-------DLRS-IASCDGGIHLWDPFIG-- 814 (1034)
T ss_pred cccceeec-cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-------ccce-eeeccCcceeeccccc--
Confidence 44567777 8999999997631 222222221 123344444 1222 2356888999997665
Q ss_pred Cceeeeee----ccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeecc-----ccccCceEEEEEcCCCCCE
Q 017601 230 GGCLHRIC----GSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWV-----HCSKYEITGLSFSSIDSNY 298 (369)
Q Consensus 230 ~~~~~~~~----~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~-----~h~~~~v~~l~~sp~d~~~ 298 (369)
..+..+. +..++.|.|+. +-+. .+|-++...+|+++|.|..+-...|+ +. ..-+.+++..| .|+.
T Consensus 815 -r~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P-na~~R~iaVa~-~GN~ 890 (1034)
T KOG4190|consen 815 -RLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP-NALTRAIAVAD-KGNK 890 (1034)
T ss_pred -chhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCC-chheeEEEecc-Ccch
Confidence 4443221 11134455542 2233 44445889999999999976665554 23 35588999999 9999
Q ss_pred EEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE--cCCCCEEEEEeCCCcEEE-EECCCCc
Q 017601 299 IYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK--CSNRDVLGGWSDSGSIFV-ADVVAKE 358 (369)
Q Consensus 299 l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~--~~d~~~l~sgs~dg~I~i-Wd~~~~~ 358 (369)
++.+-..|.|-+.|.++++.+..++... ..... .|....|+....|.++.+ |..-.|.
T Consensus 891 lAa~LSnGci~~LDaR~G~vINswrpme--cdllqlaapsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 891 LAAALSNGCIAILDARNGKVINSWRPME--CDLLQLAAPSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred hhHHhcCCcEEEEecCCCceeccCCccc--chhhhhcCchhHHHHhhcccceeEeeehhcCCe
Confidence 9999999999999999998887776544 22222 335677888888999988 8766654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00028 Score=66.21 Aligned_cols=212 Identities=17% Similarity=0.180 Sum_probs=117.8
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc--cccc---cCCC-CCCCCCCeeEEEECCCCceeEEEEe
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL--TYSV---LPQD-CGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~--~~~~---~~~~-~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
-..|+++|++ ..++++-=..|.+.++++..... +... .... .+.. .......+ .+.|+|++..++++.
T Consensus 89 p~~i~~~~~g---~~l~vany~~g~v~v~~l~~~g~-l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~~pdg~~v~v~d- 162 (345)
T PF10282_consen 89 PCHIAVDPDG---RFLYVANYGGGSVSVFPLDDDGS-LGEVVQTVRHEGSGPNPDRQEGPHPH-QVVFSPDGRFVYVPD- 162 (345)
T ss_dssp EEEEEECTTS---SEEEEEETTTTEEEEEEECTTSE-EEEEEEEEESEEEESSTTTTSSTCEE-EEEE-TTSSEEEEEE-
T ss_pred cEEEEEecCC---CEEEEEEccCCeEEEEEccCCcc-cceeeeecccCCCCCcccccccccce-eEEECCCCCEEEEEe-
Confidence 3468888874 33444434578999999986421 1111 0100 0110 00111112 699999766666665
Q ss_pred cccceEEEEeCCcc---eEEEEee-----eCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCccc-CCceeeeeec
Q 017601 169 SFSKSIDVYDQDIH---LRTLRTL-----WYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKE-NGGCLHRICG 238 (369)
Q Consensus 169 s~d~~i~lwd~~~~---~~~~~~~-----~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~-~~~~~~~~~~ 238 (369)
-....|.+|+.+.. +...... ..|..+.|.. ++..+..+.+ +++|.++++.... ....++.+..
T Consensus 163 lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p------dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 163 LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP------DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T------TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC------CcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence 44457999987532 2221111 2445555554 4555555554 7899999988221 1122333221
Q ss_pred ---cC--CCcEEEEEECCCC-cE-EEEeCCCcEEEEeCCC--c--eeeeeccccccCceEEEEEcCCCCCEEEEEEC-CC
Q 017601 239 ---SV--GDILYAVCSSSTG-NI-AVAGADRTVTIYDPRR--W--SALSRWVHCSKYEITGLSFSSIDSNYIYVQGV-DY 306 (369)
Q Consensus 239 ---~~--~~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~~--~--~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~ 306 (369)
.. ......|+++||| +| ++--.+++|.+|++.. + +.+..+... ......++|+| ++++|+++.. ++
T Consensus 237 ~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~-~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 237 LPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSP-DGRYLYVANQDSN 314 (345)
T ss_dssp CETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-T-TSSEEEEEETTTT
T ss_pred ccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeC-CCCEEEEEecCCC
Confidence 10 1257889999999 44 5555688999999832 3 333344333 34579999999 9999988875 56
Q ss_pred eEEEEECc--CCceeE
Q 017601 307 EVFCGQWR--ESSKVF 320 (369)
Q Consensus 307 ~i~vwd~~--~~~~~~ 320 (369)
.|.+|++. ++.+..
T Consensus 315 ~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 315 TVSVFDIDPDTGKLTP 330 (345)
T ss_dssp EEEEEEEETTTTEEEE
T ss_pred eEEEEEEeCCCCcEEE
Confidence 99999875 454433
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00035 Score=66.34 Aligned_cols=133 Identities=21% Similarity=0.198 Sum_probs=90.3
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccC-c
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKY-E 285 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~-~ 285 (369)
++.++.++.++.+..||.+++ +.+-..... . ....... ++.++.++.||.+..+|..+++.+-..... .. .
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~~--~-~~~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-~~~~ 312 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSG---RVLWKRDAS--S-YQGPAVD-DNRLYVTDADGVVVALDRRSGSELWKNDEL-KYRQ 312 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCC---cEEEeeccC--C-ccCceEe-CCEEEEECCCCeEEEEECCCCcEEEccccc-cCCc
Confidence 457778888999999999988 444433321 1 1122221 337888889999999999998877554321 11 1
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcC--CCCEEEEEeCCCcEEEE
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCS--NRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~--d~~~l~sgs~dg~I~iW 352 (369)
..+... .+..++.++.|+.++++|.++++.+..+..+. ..+...| -++.|+.++.||.|+.+
T Consensus 313 ~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 313 LTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--SGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred cccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--CccccCCEEECCEEEEEeCCceEEEe
Confidence 222222 35688899999999999999999988887554 2233333 34568899999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3e-05 Score=68.55 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=95.3
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeee-CCc---ceee-eccCCCCCC-CCcEEEEEcCCeEEEEeC
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLW-YPS---SLNF-VQNLSPVNG-GPNMLAVTEGCQLTIWDL 224 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~-~~~---~v~~-~~~~~~~~~-~~~lla~s~d~~v~iwD~ 224 (369)
+.+++|+.+ ...+.+ +.|-.|.+|+....-..+.... .|. .+.+ +....|.|. ...+...+..|.|+|-|+
T Consensus 175 iNSiS~NsD-~et~lS--aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 175 INSISFNSD-KETLLS--ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred eeeeeecCc-hheeee--ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence 457888874 444554 4788999998764322222111 111 1111 111112222 345666788899999999
Q ss_pred CcccC---Cceeee--eecc-------CCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeecccccc-------
Q 017601 225 RMKEN---GGCLHR--ICGS-------VGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSK------- 283 (369)
Q Consensus 225 ~~~~~---~~~~~~--~~~~-------~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~------- 283 (369)
|+... .+.+.. +.+- -...|..+.|+++| ++++ -.--+|++||++. ..++.+..-| .
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls-RdyltvkiwDvnm~k~pikTi~~h-~~l~~~l~ 329 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS-RDYLTVKIWDVNMAKNPIKTIPMH-CDLMDELN 329 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE-eccceEEEEecccccCCceeechH-HHHHHHHH
Confidence 95310 011111 1110 02468888999999 5554 4457999999987 5667776544 2
Q ss_pred -----Cce---EEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 284 -----YEI---TGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 284 -----~~v---~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
+.| ..+.||. |...+++||..+..-++-..+
T Consensus 330 d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 330 DVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred hhhhccceeeeEEEEecC-Ccccccccccccceeeecccc
Confidence 222 4688999 999999999998888876443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0017 Score=57.76 Aligned_cols=192 Identities=16% Similarity=0.125 Sum_probs=117.7
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
+.+|.+.++.++.+- -..+.|..||.............+..+.+.. + ++.++.+..++ +.++|..+++- ..
T Consensus 4 gp~~d~~~g~l~~~D-~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~-----~-~g~l~v~~~~~-~~~~d~~~g~~-~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVD-IPGGRIYRVDPDTGEVEVIDLPGPNGMAFDR-----P-DGRLYVADSGG-IAVVDPDTGKV-TV 74 (246)
T ss_dssp EEEEETTTTEEEEEE-TTTTEEEEEETTTTEEEEEESSSEEEEEEEC-----T-TSEEEEEETTC-EEEEETTTTEE-EE
T ss_pred ceEEECCCCEEEEEE-cCCCEEEEEECCCCeEEEEecCCCceEEEEc-----c-CCEEEEEEcCc-eEEEecCCCcE-EE
Confidence 678888666666665 6789999999875544433333344444432 2 35666666544 55669887621 22
Q ss_pred eeeee-cc-CCCcEEEEEECCCC-cEEEEeCC--------CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE-
Q 017601 233 LHRIC-GS-VGDILYAVCSSSTG-NIAVAGAD--------RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY- 300 (369)
Q Consensus 233 ~~~~~-~~-~~~~v~~v~~sp~g-~lasgs~D--------~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~- 300 (369)
+.... .. .....+.+++.|+| ..++-... +.|..++.. ++.... ... -...+.++|+| +++.|+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~-~~~pNGi~~s~-dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADG-LGFPNGIAFSP-DGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEE-ESSEEEEEEET-TSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE-ecC-cccccceEECC-cchheee
Confidence 22221 11 14678999999999 55554433 457777776 443332 333 35578999999 998765
Q ss_pred EEECCCeEEEEECcCCce-------eEEEEcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 301 VQGVDYEVFCGQWRESSK-------VFAFRGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 301 s~s~D~~i~vwd~~~~~~-------~~~~~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+-+..+.|..+|+..... ...+.+.. ...++..-.+|.+.++....+.|.+++.. |+
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence 566788999999964221 11222211 12455555689998888889999999987 54
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=74.41 Aligned_cols=211 Identities=14% Similarity=0.066 Sum_probs=137.3
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecC-CCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDT-SGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
-|++.|.-+.-+-. .++.+++-+|++..|.-.. ...++-. ....|... +.+++.+- +...+.+.
T Consensus 7 mhrd~i~hv~~tka-----~fiiqASlDGh~KFWkKs~isGvEfVK---hFraHL~~-----I~sl~~S~-dg~L~~Sv- 71 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-----KFIIQASLDGHKKFWKKSRISGVEFVK---HFRAHLGV-----ILSLAVSY-DGWLFRSV- 71 (558)
T ss_pred cccceeeeEeeehh-----heEEeeecchhhhhcCCCCccceeehh---hhHHHHHH-----HHhhhccc-cceeEeec-
Confidence 48889988776543 5777888888999887553 1111111 11112111 22466665 34455554
Q ss_pred cc-cceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 169 SF-SKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 169 s~-d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
+. |+.+++||+.. .+.-+++..-|..+.++.. + .|.-.++|++ +++.+.++|-+... .+...+..-+..+
T Consensus 72 ~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~s-k--Gd~~s~IAVs~~~sg~i~VvD~~~d~--~q~~~fkklH~sP 146 (558)
T KOG0882|consen 72 EDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTS-K--GDKISLIAVSLFKSGKIFVVDGFGDF--CQDGYFKKLHFSP 146 (558)
T ss_pred cCcccceeEEEeeccchhhhcccccCCCceEEecC-C--CCeeeeEEeecccCCCcEEECCcCCc--CccceecccccCc
Confidence 45 99999999753 2222344445666666653 1 1123466665 58899999988652 2233333222689
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCC------cee---------eeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRR------WSA---------LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~------~~~---------~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
|.++.++|-+ .+.+....|.|.-|.... ... +..+... +...+++.|+| ++..+.+-+.|..
T Consensus 147 V~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~-Kt~pts~Efsp-~g~qistl~~Drk 224 (558)
T KOG0882|consen 147 VKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA-KTEPTSFEFSP-DGAQISTLNPDRK 224 (558)
T ss_pred eEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccc-ccCccceEEcc-ccCcccccCcccE
Confidence 9999999999 889998899999998762 111 1122344 56789999999 9999999999999
Q ss_pred EEEEECcCCceeEEE
Q 017601 308 VFCGQWRESSKVFAF 322 (369)
Q Consensus 308 i~vwd~~~~~~~~~~ 322 (369)
|++++.+++++++.+
T Consensus 225 VR~F~~KtGklvqei 239 (558)
T KOG0882|consen 225 VRGFVFKTGKLVQEI 239 (558)
T ss_pred EEEEEeccchhhhhh
Confidence 999999987555544
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00019 Score=62.39 Aligned_cols=197 Identities=14% Similarity=-0.000 Sum_probs=119.2
Q ss_pred EEEECCC----CceeEEEEecccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 153 GLCFSPS----QWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 153 ~l~~~p~----~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
++.|-|. ....+|.+ +..+...+|... +.........+...++.+.... .....++-++.|.++++.++.-+
T Consensus 72 g~~F~p~s~~~kc~~la~g-G~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~c--d~~~~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADG-GASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYC--DLKFPLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred cccccchHhhccccEEEec-cccceeeeecccCcccceeeecccccchhhhhhhc--ccccceeeccCCcceeEEEEecC
Confidence 5667663 33467776 788999999765 2222211112222222222111 01235666788999999998765
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceee-e-eccccccCceEEEEEcCCCCCEEEEEE
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSAL-S-RWVHCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~-~-~~~~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
.....++.- .-.++++++++++ ++++-+....|-.|.+.. ++.+ . ..... .+.=.+..||. ....+|++.
T Consensus 149 s~~~~~h~~----~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-~D~gF~~S~s~-~~~~FAv~~ 222 (344)
T KOG4532|consen 149 SNKFAVHNQ----NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-SDHGFYNSFSE-NDLQFAVVF 222 (344)
T ss_pred cccceeecc----ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-CCCceeeeecc-CcceEEEEe
Confidence 322322211 1348899999999 999999999999998876 3332 2 22233 45567889999 888999999
Q ss_pred CCCeEEEEECcCCc-eeEEE---EcCCCeeeeeE---cCC--CCEEEEEeCCCcEEEEECCCCcc
Q 017601 304 VDYEVFCGQWRESS-KVFAF---RGDSNWLGFSK---CSN--RDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 304 ~D~~i~vwd~~~~~-~~~~~---~g~~~~~~~~~---~~d--~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.||++.|||++.-. ++... +.|.+ ..+.. ++- -++|+-.-.=+.+.+-|+++++.
T Consensus 223 Qdg~~~I~DVR~~~tpm~~~sstrp~hn-Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPMAEISSTRPHHN-GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred cCCcEEEEEecccccchhhhcccCCCCC-CceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 99999999998732 22211 22221 22222 221 23455444557788888888764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00059 Score=66.77 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=71.2
Q ss_pred CCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC---------cEEEEeCCCcee
Q 017601 205 NGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR---------TVTIYDPRRWSA 274 (369)
Q Consensus 205 ~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~---------~v~vwD~~~~~~ 274 (369)
||...|+.+-+.|.++|-.-... ..++ .+.. +-.+....|+++| .||+++.|. .|..|.. -|..
T Consensus 227 pdrP~lavcy~nGr~QiMR~eND--~~Pv-v~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i 300 (1189)
T KOG2041|consen 227 PDRPRLAVCYANGRMQIMRSEND--PEPV-VVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHI 300 (1189)
T ss_pred CCCCEEEEEEcCceehhhhhcCC--CCCe-EEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhh
Confidence 56678888888898888643322 1333 2333 3678888999999 898887654 3444432 2666
Q ss_pred eeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 275 LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 275 ~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
+.+++-. ...|++++|-. .|-.++- ..|+.|.+-++++
T Consensus 301 ~gtlkvp-g~~It~lsWEg-~gLriA~-AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 301 VGTLKVP-GSCITGLSWEG-TGLRIAI-AVDSFIYFANIRP 338 (1189)
T ss_pred eEEEecC-CceeeeeEEcC-CceEEEE-EecceEEEEeecc
Confidence 7777777 78899999987 5555544 4799999988876
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-06 Score=86.38 Aligned_cols=191 Identities=15% Similarity=0.071 Sum_probs=122.3
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.|...-++++|+-+. ..|+.+...|.|.++++..+.. ...++.|...+ +-+.-+.++..++.++ +
T Consensus 1099 d~~~~fTc~afs~~~----~hL~vG~~~Geik~~nv~sG~~-----e~s~ncH~Sav-----T~vePs~dgs~~Ltss-s 1163 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGT----NHLAVGSHAGEIKIFNVSSGSM-----EESVNCHQSAV-----TLVEPSVDGSTQLTSS-S 1163 (1516)
T ss_pred ccccceeeEEeecCC----ceEEeeeccceEEEEEccCccc-----ccccccccccc-----ccccccCCcceeeeec-c
Confidence 577788999998763 6888899999999999987632 12233343322 2344455555566655 4
Q ss_pred ccc-eEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee-eeccC--CCcEE
Q 017601 170 FSK-SIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR-ICGSV--GDILY 245 (369)
Q Consensus 170 ~d~-~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~-~~~~~--~~~v~ 245 (369)
+.. -..+|+........+.+.....+.|.... ..-+.+.....+.|||++|+ ..+.+ +.... ...-+
T Consensus 1164 ~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~------q~r~~gt~~d~a~~YDvqT~---~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDEDKAVKFSNSL------QFRALGTEADDALLYDVQTC---SPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred ccCchHHHhccccccCccccccccceeehhhhH------HHHHhcccccceEEEecccC---cHHHHhcCcchhhhhhcc
Confidence 443 67899986544444444444566665531 12222333457889999998 55555 22210 23347
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
+..|||+. ++. .|| .+||+|..+.++.|..- ... ..=.|+| .|..++-.+ -|||+++-+
T Consensus 1235 ~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~f-t~~-~~G~FHP-~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1235 LAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQF-TDY-GGGGFHP-SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred ccccCCCcceEe---eCc--eeeeeccHHHHhhhhhh-eec-ccccccC-CCceEEeec-----hhhhhHHHH
Confidence 88999999 553 355 57999999888887754 322 2336999 898888766 589999843
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.002 Score=58.39 Aligned_cols=222 Identities=15% Similarity=0.158 Sum_probs=126.6
Q ss_pred CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc--cceEEEEeCCcc---eEEEEe---
Q 017601 117 YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF--SKSIDVYDQDIH---LRTLRT--- 188 (369)
Q Consensus 117 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~--d~~i~lwd~~~~---~~~~~~--- 188 (369)
..-|++|++++...++....... .... .+=++|+|++..+.++. .. ++.|.-|.++.. ...+..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~-----~~~n--ptyl~~~~~~~~LY~v~-~~~~~ggvaay~iD~~~G~Lt~ln~~~~ 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVA-----ELGN--PTYLAVNPDQRHLYVVN-EPGEEGGVAAYRIDPDDGRLTFLNRQTL 86 (346)
T ss_pred CCceEEEEEeCcccccchhhhcc-----ccCC--CceEEECCCCCEEEEEE-ecCCcCcEEEEEEcCCCCeEEEeecccc
Confidence 45799999986533332211111 1111 12389999654444444 33 677888866532 221111
Q ss_pred eeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCc-ccCCceeeeeeccCCCc----------EEEEEECCCC-cE
Q 017601 189 LWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRM-KENGGCLHRICGSVGDI----------LYAVCSSSTG-NI 255 (369)
Q Consensus 189 ~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~-~~~~~~~~~~~~~~~~~----------v~~v~~sp~g-~l 255 (369)
...+. .++. .++++..++++. ..|.|.++-++. +.-...++.+.+. +. +-+..|.|++ +|
T Consensus 87 ~g~~p--~yvs---vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~--g~~p~~rQ~~~h~H~a~~tP~~~~l 159 (346)
T COG2706 87 PGSPP--CYVS---VDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT--GSGPHERQESPHVHSANFTPDGRYL 159 (346)
T ss_pred CCCCC--eEEE---ECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecC--CCCCCccccCCccceeeeCCCCCEE
Confidence 11111 2322 234555666655 368999999875 3222333444443 33 7788999999 66
Q ss_pred EEEe--CCCcEEEEeCCCceeeeecc---ccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCC--c--eeEEE---
Q 017601 256 AVAG--ADRTVTIYDPRRWSALSRWV---HCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRES--S--KVFAF--- 322 (369)
Q Consensus 256 asgs--~D~~v~vwD~~~~~~~~~~~---~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~--~--~~~~~--- 322 (369)
++.. .| .|.+|++..+.....-. .. ...-..+.|+| ++++.+... .+++|.+|..+.. + .++.+
T Consensus 160 ~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~-G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 160 VVPDLGTD-RIFLYDLDDGKLTPADPAEVKP-GAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred EEeecCCc-eEEEEEcccCccccccccccCC-CCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 5543 34 48899988655432111 22 35578999999 999987765 5999999999873 1 22222
Q ss_pred ----EcCCCeeeeeEcCCCCEEEEEeCC-CcEEEEECCC
Q 017601 323 ----RGDSNWLGFSKCSNRDVLGGWSDS-GSIFVADVVA 356 (369)
Q Consensus 323 ----~g~~~~~~~~~~~d~~~l~sgs~d-g~I~iWd~~~ 356 (369)
.|......+...+||++|.....- ..|-++.+..
T Consensus 237 P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 237 PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 233322234446699998877653 4666665543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0022 Score=59.68 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=77.8
Q ss_pred CCcEEEEEcCCeEEEEeCCcccC--Cceeeeeecc------CCCcEEEEEECCCC-cEEEEe----------CCCcEEEE
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKEN--GGCLHRICGS------VGDILYAVCSSSTG-NIAVAG----------ADRTVTIY 267 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~--~~~~~~~~~~------~~~~v~~v~~sp~g-~lasgs----------~D~~v~vw 267 (369)
++..+-++..|+|.+-|+...+. ...+..+... ..+.+.-++++|++ ++.+.. ..+.|.++
T Consensus 205 dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi 284 (352)
T TIGR02658 205 SGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV 284 (352)
T ss_pred CCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence 34555555559999999654310 0222222110 01233449999999 665532 12579999
Q ss_pred eCCCceeeeeccccccCceEEEEEcCCCCC-EEEEEE-CCCeEEEEECcCCceeEEE
Q 017601 268 DPRRWSALSRWVHCSKYEITGLSFSSIDSN-YIYVQG-VDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 268 D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~-~l~s~s-~D~~i~vwd~~~~~~~~~~ 322 (369)
|.++++.+..+.- ...+.+++|+| |++ +|++.. .++.|.+.|..+++.+..+
T Consensus 285 D~~t~kvi~~i~v--G~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 285 DAKTGKRLRKIEL--GHEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ECCCCeEEEEEeC--CCceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999999988773 34789999999 999 777665 6789999999999888887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.2e-06 Score=83.77 Aligned_cols=186 Identities=18% Similarity=0.139 Sum_probs=119.4
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc--CCeEEEEeCCc
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE--GCQLTIWDLRM 226 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~--d~~v~iwD~~~ 226 (369)
.++++++|+- +...+++| +..|.|++|++......-....|...++.+... .|+..+++.+. .--..+|++..
T Consensus 1102 ~~fTc~afs~-~~~hL~vG-~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs---~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1102 ALFTCIAFSG-GTNHLAVG-SHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPS---VDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred cceeeEEeec-CCceEEee-eccceEEEEEccCcccccccccccccccccccc---CCcceeeeeccccCchHHHhcccc
Confidence 4688999998 66788998 899999999875433222233355566666532 35666666443 33578999875
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc----ccccCceEEEEEcCCCCCEEEE
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV----HCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~----~h~~~~v~~l~~sp~d~~~l~s 301 (369)
- ....+.+... .++.|+... .-+.|..-..+.|||+.++.++.++. +. ...=+...||| +..+++
T Consensus 1177 ~--~~~~Hsf~ed-----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~-~y~~n~a~FsP-~D~LIl- 1246 (1516)
T KOG1832|consen 1177 T--GGPRHSFDED-----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS-SYSNNLAHFSP-CDTLIL- 1246 (1516)
T ss_pred c--cCcccccccc-----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh-hhhccccccCC-CcceEe-
Confidence 3 3666666543 477888766 33445555668899999998887743 22 34457889999 777765
Q ss_pred EECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 302 QGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 302 ~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.|| .+||++..+.++.|.--+...+-..-|.|..++.-| -|||++|-+
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHH
Confidence 455 579999877776663222001111234566555544 378888765
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0022 Score=67.54 Aligned_cols=234 Identities=14% Similarity=0.114 Sum_probs=129.0
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
.+.|.++.|-++. ..+..+-..|.|.+...+.... .....+ .+.-+.|+.+.+|||+++ ++|.. ..+
T Consensus 75 ~~~ivs~~yl~d~----~~l~~~~~~Gdi~~~~~~~~~~---~~~~E~----VG~vd~GI~a~~WSPD~E-lla~v-T~~ 141 (928)
T PF04762_consen 75 NDKIVSFQYLADS----ESLCIALASGDIILVREDPDPD---EDEIEI----VGSVDSGILAASWSPDEE-LLALV-TGE 141 (928)
T ss_pred CCcEEEEEeccCC----CcEEEEECCceEEEEEccCCCC---CceeEE----EEEEcCcEEEEEECCCcC-EEEEE-eCC
Confidence 4788899988873 4566666778888874432111 101111 122245788999999655 55555 345
Q ss_pred ceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC-------c-e---eeeeecc
Q 017601 172 KSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG-------G-C---LHRICGS 239 (369)
Q Consensus 172 ~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~-------~-~---~~~~~~~ 239 (369)
+++-+...+ ..+...... +. .......+++|.+.+=.=|--+.++.. . + ...+..
T Consensus 142 ~~l~~mt~~fd~i~E~~l~--~~----------~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~- 208 (928)
T PF04762_consen 142 GNLLLMTRDFDPISEVPLD--SD----------DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSW- 208 (928)
T ss_pred CEEEEEeccceEEEEeecC--cc----------ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcccc-
Confidence 666665432 111111000 00 011235566654433222221111100 0 0 011111
Q ss_pred CCCcEEEEEECCCC-cEEEEeC------CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC---CCeEE
Q 017601 240 VGDILYAVCSSSTG-NIAVAGA------DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV---DYEVF 309 (369)
Q Consensus 240 ~~~~v~~v~~sp~g-~lasgs~------D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~---D~~i~ 309 (369)
...-..|+|-.|| ++|+.+. -+.++||+ |.|....+-..- .+--.+++|.| .|+++|+.-. ...|.
T Consensus 209 -dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v-~gLe~~l~WrP-sG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 209 -DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPV-DGLEGALSWRP-SGNLIASSQRLPDRHDVV 284 (928)
T ss_pred -CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccC-CCccCCccCCC-CCCEEEEEEEcCCCcEEE
Confidence 2345678999999 8887764 26899999 447665554433 44456789999 9999998765 34566
Q ss_pred EEECcCCceeEEE--Ec---CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 310 CGQWRESSKVFAF--RG---DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 310 vwd~~~~~~~~~~--~g---~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+|. ++|-....| +- ......+...+|++.||..-.|. |++|-..+-
T Consensus 285 FfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 285 FFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred EEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 665 344333333 21 11223455577999999988776 999987653
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00014 Score=72.87 Aligned_cols=179 Identities=14% Similarity=0.078 Sum_probs=119.4
Q ss_pred CceeEEEEecccceEEEEeCCcce-EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 160 QWSMAAVARSFSKSIDVYDQDIHL-RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
++..+..| +....+-.+|..... ........+ .+..+.. .+..+.++...|+|.+-|.++- +.++++..
T Consensus 146 ~~~~~i~G-g~Q~~li~~Dl~~~~e~r~~~v~a~-~v~imR~-----Nnr~lf~G~t~G~V~LrD~~s~---~~iht~~a 215 (1118)
T KOG1275|consen 146 GPSTLIMG-GLQEKLIHIDLNTEKETRTTNVSAS-GVTIMRY-----NNRNLFCGDTRGTVFLRDPNSF---ETIHTFDA 215 (1118)
T ss_pred CCcceeec-chhhheeeeecccceeeeeeeccCC-ceEEEEe-----cCcEEEeecccceEEeecCCcC---ceeeeeec
Confidence 33456666 666677777765321 111111121 2444442 1234444556899999999988 88899987
Q ss_pred cCCCcEEEEEECCCC-cEEEEeC---------CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 239 SVGDILYAVCSSSTG-NIAVAGA---------DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g-~lasgs~---------D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
| .+.|..+ +-.| .|+++|. |.-|+|||+|..+.+..+.-+ .++ .-+.|.|.-...++.+|..|..
T Consensus 216 H-s~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-~~P-~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 216 H-SGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-YGP-QFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred c-ccceeee--eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-cCc-hhhhhcccccceEEEEecccce
Confidence 7 6777655 4556 7776654 677999999998888877766 444 6688999667789999999999
Q ss_pred EEEE---CcCC-ceeEEEEcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 309 FCGQ---WRES-SKVFAFRGDS-NWLGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 309 ~vwd---~~~~-~~~~~~~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
.+-| +.+. ..++.+.... ....+..+++++.+|-|..+|.|.+|.
T Consensus 291 q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 291 QFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9999 4332 1222222222 124455577999999999999999996
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0013 Score=63.24 Aligned_cols=188 Identities=9% Similarity=-0.060 Sum_probs=104.3
Q ss_pred EEEECCCCceeEEEEecc--cceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-c--CCeEEEEeCCc
Q 017601 153 GLCFSPSQWSMAAVARSF--SKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-E--GCQLTIWDLRM 226 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~--d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~--d~~v~iwD~~~ 226 (369)
.-.|+|++...++..... +..|.++|... ..+.+.. .+....... ++||+..++... . +..|.++|+.+
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~---~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSD---VSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeE---ECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 578999766545544122 34577778753 2233322 111111112 346776666543 2 35788889876
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CC--cEEEEeCCCceeeeec-cccccCceEEEEEcCCCCCEEEE
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DR--TVTIYDPRRWSALSRW-VHCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~--~v~vwD~~~~~~~~~~-~~h~~~~v~~l~~sp~d~~~l~s 301 (369)
+ . ...+... ........|+||| .|+-.+. .+ .|.++|+.+++..... .+. . ...||| ||+.|+-
T Consensus 267 g---~-~~~LT~~-~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~---~~~~SP-DG~~Ia~ 335 (419)
T PRK04043 267 K---T-LTQITNY-PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N---NSSVST-YKNYIVY 335 (419)
T ss_pred C---c-EEEcccC-CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c---CceECC-CCCEEEE
Confidence 6 3 3334332 1223345799999 5555443 33 5777788876653322 222 1 248999 9998877
Q ss_pred EECC---------CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCC-C--cEEEEECCCC
Q 017601 302 QGVD---------YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDS-G--SIFVADVVAK 357 (369)
Q Consensus 302 ~s~D---------~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~d-g--~I~iWd~~~~ 357 (369)
.+.. ..|.+.|+.+++......+.. -.....+|||+.|+-.+.+ + .+.+.++...
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~-~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV-NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC-cCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 6654 367888887775433332211 1223457799876654433 3 3556676544
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0015 Score=59.00 Aligned_cols=201 Identities=13% Similarity=0.131 Sum_probs=120.9
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-----cCCeEEEEeCCcc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-----EGCQLTIWDLRMK 227 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-----~d~~v~iwD~~~~ 227 (369)
+++.+|..+..++.++---.-..+||....... .....+..-.|.-+..|++|+..|.+.= ..|.|-|||.+.+
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~-~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL-QRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee-eEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 588899888888888655556778886432211 1222333334555556677776666642 2478999999833
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC------------------CCcEEEEeCCCceeeeecc----ccccC
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA------------------DRTVTIYDPRRWSALSRWV----HCSKY 284 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~------------------D~~v~vwD~~~~~~~~~~~----~h~~~ 284 (369)
...+..+..+ +-.-..+.+.||| .|+++.. +-++...|.++++.+.++. -| +-
T Consensus 88 --~~ri~E~~s~-GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~-~l 163 (305)
T PF07433_consen 88 --YRRIGEFPSH-GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH-QL 163 (305)
T ss_pred --cEEEeEecCC-CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc-cc
Confidence 1556666644 3445567789999 6665421 3356667778888877633 35 78
Q ss_pred ceEEEEEcCCCCCEEEEEECCCeE-----EEEECcCCceeEEEEcC-------CCe-eeeeEcCCCCEEE-EEeCCCcEE
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYEV-----FCGQWRESSKVFAFRGD-------SNW-LGFSKCSNRDVLG-GWSDSGSIF 350 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~i-----~vwd~~~~~~~~~~~g~-------~~~-~~~~~~~d~~~l~-sgs~dg~I~ 350 (369)
.|..+++.+ +|..+...-..+.- .+.-.+.++.+..+... .++ .++....++.+++ |+=.-+.+.
T Consensus 164 SiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 164 SIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred ceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 899999999 88776654433321 11112222222222211 011 3444455777665 444678999
Q ss_pred EEECCCCcc
Q 017601 351 VADVVAKEN 359 (369)
Q Consensus 351 iWd~~~~~~ 359 (369)
+||..+++-
T Consensus 243 ~~d~~tg~~ 251 (305)
T PF07433_consen 243 VWDAATGRL 251 (305)
T ss_pred EEECCCCCE
Confidence 999998863
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0006 Score=65.59 Aligned_cols=145 Identities=12% Similarity=0.067 Sum_probs=90.7
Q ss_pred CCCCCc-EEEEEc---CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEE-EEeCC--CcEEEEeCCCceee
Q 017601 204 VNGGPN-MLAVTE---GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIA-VAGAD--RTVTIYDPRRWSAL 275 (369)
Q Consensus 204 ~~~~~~-lla~s~---d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~la-sgs~D--~~v~vwD~~~~~~~ 275 (369)
+||+.. ++..+. +..|.++|+.++ +...-.... +...+..|+||| .++ +.+.+ ..|.++|+..++ .
T Consensus 196 SpDG~~~i~y~s~~~~~~~Iyv~dl~tg---~~~~lt~~~--g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~ 269 (419)
T PRK04043 196 ANKEQTAFYYTSYGERKPTLYKYNLYTG---KKEKIASSQ--GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-L 269 (419)
T ss_pred CCCCCcEEEEEEccCCCCEEEEEECCCC---cEEEEecCC--CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-E
Confidence 466765 443443 357999999877 332222222 556678899999 554 44333 467788887765 3
Q ss_pred eeccccccCceEEEEEcCCCCCEEEEEECC-C--eEEEEECcCCceeEEE-EcCCCeeeeeEcCCCCEEEEEeCC-----
Q 017601 276 SRWVHCSKYEITGLSFSSIDSNYIYVQGVD-Y--EVFCGQWRESSKVFAF-RGDSNWLGFSKCSNRDVLGGWSDS----- 346 (369)
Q Consensus 276 ~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D-~--~i~vwd~~~~~~~~~~-~g~~~~~~~~~~~d~~~l~sgs~d----- 346 (369)
..+..+ ........|+| ||+.|+-.+.. + .|.+.|+.+++..+.. .+.. ....++||+.|+-.+..
T Consensus 270 ~~LT~~-~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~---~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 270 TQITNY-PGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN---NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred EEcccC-CCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc---CceECCCCCEEEEEEcCCCccc
Confidence 445444 33345568999 99987776642 2 6888888877664433 2332 23457899987765543
Q ss_pred ----CcEEEEECCCCcc
Q 017601 347 ----GSIFVADVVAKEN 359 (369)
Q Consensus 347 ----g~I~iWd~~~~~~ 359 (369)
..|++.|+.+++.
T Consensus 345 ~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 345 GKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCCCcEEEEEECCCCCe
Confidence 3678888887753
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0013 Score=62.62 Aligned_cols=130 Identities=13% Similarity=-0.000 Sum_probs=82.0
Q ss_pred EEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC---CCcEEEEeCCC----ceeeeeccccccCceEEEE
Q 017601 219 LTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA---DRTVTIYDPRR----WSALSRWVHCSKYEITGLS 290 (369)
Q Consensus 219 v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~---D~~v~vwD~~~----~~~~~~~~~h~~~~v~~l~ 290 (369)
+.|+.++..+ -++..+... ..|...+|-|.| .+++-+. ..++.+|-+.+ .+.+.++. +...+.|.
T Consensus 427 ~eIfrireKd--Ipve~velk--e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vf 499 (698)
T KOG2314|consen 427 LEIFRIREKD--IPVEVVELK--ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVF 499 (698)
T ss_pred EEEEEeeccC--CCceeeecc--hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEE
Confidence 4444444331 344444444 788999999999 6555432 45788898773 23344444 34578999
Q ss_pred EcCCCCCEEEEE---ECCCeEEEEECcCCceeEEE-EcCCCeeeeeEcCCCCEEEEEeCCC------cEEEEECCC
Q 017601 291 FSSIDSNYIYVQ---GVDYEVFCGQWRESSKVFAF-RGDSNWLGFSKCSNRDVLGGWSDSG------SIFVADVVA 356 (369)
Q Consensus 291 ~sp~d~~~l~s~---s~D~~i~vwd~~~~~~~~~~-~g~~~~~~~~~~~d~~~l~sgs~dg------~I~iWd~~~ 356 (369)
|+| .|++++.+ |.-|.+.++|.....+..+- ..|.....+..-|.|+++++++... --++|++..
T Consensus 500 wsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 500 WSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EcC-CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 999 99998775 45688999998753332222 2233223445577999999998654 446777653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0015 Score=61.20 Aligned_cols=150 Identities=13% Similarity=-0.033 Sum_probs=100.0
Q ss_pred ECCCCceeEEEEecccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCC-eEEEEeCCcccCCcee
Q 017601 156 FSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC-QLTIWDLRMKENGGCL 233 (369)
Q Consensus 156 ~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~-~v~iwD~~~~~~~~~~ 233 (369)
|++.++.++|.. | -|..-|.+.- ... ++ ..++..+.+.+.. .+...++-+..|| .+-|||.+++ .+
T Consensus 327 fa~~~Gd~ia~V-S-RGkaFi~~~~~~~~--iq-v~~~~~VrY~r~~---~~~e~~vigt~dgD~l~iyd~~~~----e~ 394 (668)
T COG4946 327 FAVVNGDYIALV-S-RGKAFIMRPWDGYS--IQ-VGKKGGVRYRRIQ---VDPEGDVIGTNDGDKLGIYDKDGG----EV 394 (668)
T ss_pred hccCCCcEEEEE-e-cCcEEEECCCCCee--EE-cCCCCceEEEEEc---cCCcceEEeccCCceEEEEecCCc----eE
Confidence 455455555554 2 2444444321 111 11 1233345555422 2344666677777 8999999987 44
Q ss_pred eeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCC----eE
Q 017601 234 HRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY----EV 308 (369)
Q Consensus 234 ~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~----~i 308 (369)
+++... -+.|.++..+|+| .++.+.....+-+.|+.++.+...=+.. .+-|+...|+| +++.+|-+=-++ .|
T Consensus 395 kr~e~~-lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~-~~lItdf~~~~-nsr~iAYafP~gy~tq~I 471 (668)
T COG4946 395 KRIEKD-LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE-YGLITDFDWHP-NSRWIAYAFPEGYYTQSI 471 (668)
T ss_pred EEeeCC-ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc-cceeEEEEEcC-CceeEEEecCcceeeeeE
Confidence 555544 5899999999999 7888888888899999998765544444 57799999999 999998765554 68
Q ss_pred EEEECcCCceeE
Q 017601 309 FCGQWRESSKVF 320 (369)
Q Consensus 309 ~vwd~~~~~~~~ 320 (369)
+++|+..++...
T Consensus 472 klydm~~~Kiy~ 483 (668)
T COG4946 472 KLYDMDGGKIYD 483 (668)
T ss_pred EEEecCCCeEEE
Confidence 999998865443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.7e-05 Score=67.16 Aligned_cols=146 Identities=13% Similarity=-0.002 Sum_probs=84.5
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCc------EEEEeCCCceeeeeccc
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRT------VTIYDPRRWSALSRWVH 280 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~------v~vwD~~~~~~~~~~~~ 280 (369)
+..++.+..||.+.+++.+.-. ....++... ...-.+.++-..+.++..+.-|+ .+.|+++..+.+..-..
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~--~~~~~i~~~-~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDL--ALMSRIPSI-HSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred CCceEecCCCceEEEEechHHH--hhhhhcccc-cccccccceeecccEEecCCcceEeeccceeeeccccccccccccc
Confidence 5678888899999999987421 111111110 01111222223332233333333 44555543322222222
Q ss_pred cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCce-eEEEEcCCCe-eeeeE-cCCCCEEEEEeCCCcEEEEECCC
Q 017601 281 CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSK-VFAFRGDSNW-LGFSK-CSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 281 h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~-~~~~~g~~~~-~~~~~-~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
. .+.|++++-+|...+.++.|+.||.+-+||++.... .-.+..|..- ..+.. ..+++.|+++++||.+..||..+
T Consensus 178 ~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 178 A-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred c-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2 345999999996666777888899999999998532 2223455410 11222 23889999999999999999874
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.002 Score=56.69 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=94.0
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeec-cccc--c
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRW-VHCS--K 283 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~-~~h~--~ 283 (369)
++.+++++.++.|..||..++ +.+-++... ..+.......++.++++..|+.+..+|.++++.+-+. .... .
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG---~~~W~~~~~--~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTG---KVLWRFDLP--GPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTS---EEEEEEECS--SCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred CCEEEEEcCCCEEEEEECCCC---CEEEEeecc--ccccceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence 567888889999999999998 666555543 2211111223446777778889999999999888763 3220 0
Q ss_pred CceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe--eee--------eEcCCCCEEEEEeCCCcEEEEE
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW--LGF--------SKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~--~~~--------~~~~d~~~l~sgs~dg~I~iWd 353 (369)
.......... ++..++.+..++.|..+|.++++.+-.+.....- ..+ .....+..++.++.++.+.-+|
T Consensus 111 ~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 111 GVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVD 189 (238)
T ss_dssp STB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEE
T ss_pred ccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEE
Confidence 1122233333 4678888888999999999999988887653311 000 1111333777788888644449
Q ss_pred CCCCc
Q 017601 354 VVAKE 358 (369)
Q Consensus 354 ~~~~~ 358 (369)
+++++
T Consensus 190 ~~tg~ 194 (238)
T PF13360_consen 190 LATGE 194 (238)
T ss_dssp TTTTE
T ss_pred CCCCC
Confidence 99886
|
... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.002 Score=56.76 Aligned_cols=172 Identities=17% Similarity=0.223 Sum_probs=95.5
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCC--CCCCeeEEEECCCC-----ceeEEEEe
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGV--GEGSWSGLCFSPSQ-----WSMAAVAR 168 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~p~~-----~~~~a~~~ 168 (369)
+.++|||| ..+||..++.|+|+++|+.... .+.+.|..... -...++++.|-+.. ...+.+-
T Consensus 47 Rkl~WSpD----~tlLa~a~S~G~i~vfdl~g~~------lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi- 115 (282)
T PF15492_consen 47 RKLAWSPD----CTLLAYAESTGTIRVFDLMGSE------LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI- 115 (282)
T ss_pred eEEEECCC----CcEEEEEcCCCeEEEEecccce------eEEcCcccccCCccccceeeeEeeccccccccceeEEEE-
Confidence 57899998 4799999999999999987431 12222221111 12346677775533 2234444
Q ss_pred cccceEEEEeC--C--cceEEEEee---e-CCcceeeeccCCCCCCCCcEEEEE-c---C-------CeEEEEeCCcc--
Q 017601 169 SFSKSIDVYDQ--D--IHLRTLRTL---W-YPSSLNFVQNLSPVNGGPNMLAVT-E---G-------CQLTIWDLRMK-- 227 (369)
Q Consensus 169 s~d~~i~lwd~--~--~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~~lla~s-~---d-------~~v~iwD~~~~-- 227 (369)
.++|.++=|-+ + +.-+..+.+ . .+..++.+.+. +..+.|+.+| + + .-+.-|-+-.+
T Consensus 116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~---p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH---PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP 192 (282)
T ss_pred eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc---CCCCEEEEeccCCCCCccccccccCceEEEEcCCCC
Confidence 57777766642 1 111111111 1 23344433332 2223344332 1 1 12444543211
Q ss_pred ---------cCC-------cee-----eee--eccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc
Q 017601 228 ---------ENG-------GCL-----HRI--CGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC 281 (369)
Q Consensus 228 ---------~~~-------~~~-----~~~--~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h 281 (369)
+.. ... ..+ +......|+.++.|||| .||+.+.+|.|.+|++.+-.....|.-+
T Consensus 193 yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 193 YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 000 000 001 11114779999999999 9999999999999999988777777654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0011 Score=65.85 Aligned_cols=143 Identities=9% Similarity=0.036 Sum_probs=97.8
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
+++++- ..++.+ ..+|.|++++.....++... +... +-+|.++++||+||+|.|-.+-+. ..
T Consensus 44 ~~av~~---~~~~~G-tH~g~v~~~~~~~~~~~~~~--~s~~---------~~~Gey~asCS~DGkv~I~sl~~~---~~ 105 (846)
T KOG2066|consen 44 CCAVHD---KFFALG-THRGAVYLTTCQGNPKTNFD--HSSS---------ILEGEYVASCSDDGKVVIGSLFTD---DE 105 (846)
T ss_pred HHHhhc---ceeeec-cccceEEEEecCCccccccc--cccc---------ccCCceEEEecCCCcEEEeeccCC---cc
Confidence 455543 577877 88899999986533222211 1111 235789999999999999998887 45
Q ss_pred eeeeeccCCCcEEEEEECCC-----C-cEEEEeCCCcEEEEeCC---CceeeeeccccccCceEEEEEcCCCCCEEEEEE
Q 017601 233 LHRICGSVGDILYAVCSSST-----G-NIAVAGADRTVTIYDPR---RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~-----g-~lasgs~D~~v~vwD~~---~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
...+.-+ .++.+++++|+ . ++++|+.-| +.++.-+ +...+ .+..- .++|.++.|.- +++|=++
T Consensus 106 ~~~~df~--rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~-eG~I~~i~W~g---~lIAWan 177 (846)
T KOG2066|consen 106 ITQYDFK--RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEG-EGPIHSIKWRG---NLIAWAN 177 (846)
T ss_pred ceeEecC--CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecC-ccceEEEEecC---cEEEEec
Confidence 5555555 88999999999 2 899999988 7776522 11112 23344 67899999965 7777665
Q ss_pred CCCeEEEEECcCCceeEEE
Q 017601 304 VDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 304 ~D~~i~vwd~~~~~~~~~~ 322 (369)
.+ -|+++|..+.+.+..+
T Consensus 178 d~-Gv~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 178 DD-GVKVYDTPTRQRLTNI 195 (846)
T ss_pred CC-CcEEEeccccceeecc
Confidence 44 5899999886655554
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0045 Score=61.38 Aligned_cols=248 Identities=12% Similarity=0.056 Sum_probs=139.7
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC------
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS------ 159 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~------ 159 (369)
+.-+.|+..-+++.|+|.+ ++|=++. .-|.+-|.-+- +.+. .+..| ...++.+.|.|.
T Consensus 9 lpG~l~~sN~~A~Dw~~~G-----LiAygsh-slV~VVDs~s~-q~iq----sie~h-----~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 9 LPGPLSRSNRNAADWSPSG-----LIAYGSH-SLVSVVDSRSL-QLIQ----SIELH-----QSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred CCCCCCcccccccccCccc-----eEEEecC-ceEEEEehhhh-hhhh----ccccC-----ccceeEEEeccCCCchhc
Confidence 3345666777889999874 5544333 24555454321 1110 11111 122445666552
Q ss_pred -----CceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCC-CcEEEEEcCCeEEEEeCCcccCCcee
Q 017601 160 -----QWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGG-PNMLAVTEGCQLTIWDLRMKENGGCL 233 (369)
Q Consensus 160 -----~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~lla~s~d~~v~iwD~~~~~~~~~~ 233 (369)
..-++|++ .-.|.|.+||............+...+..+.|.+.-++. ..|++.....++.+|+..+| +.+
T Consensus 73 lS~~~~~lliAsa-D~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG---~k~ 148 (1062)
T KOG1912|consen 73 LSPSSSQLLIASA-DISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG---EKF 148 (1062)
T ss_pred cCccccceeEEec-cccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC---cee
Confidence 22356666 677999999975333222222222222333333333334 45677778899999999998 444
Q ss_pred eeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeC-CC------ceeeeeccccccC--------------------
Q 017601 234 HRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDP-RR------WSALSRWVHCSKY-------------------- 284 (369)
Q Consensus 234 ~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~-~~------~~~~~~~~~h~~~-------------------- 284 (369)
-..... .....|+.+.|.. .+..-+..|.|-+-+. .. ++..+.-..| .+
T Consensus 149 Wk~~ys-~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~-Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 149 WKYDYS-HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDH-SDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eccccC-CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCc-cchhhhhhhhhccccccCCCcc
Confidence 333322 2566778999887 5544455565555442 21 2222211122 11
Q ss_pred -----ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCC---eeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 285 -----EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSN---WLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 285 -----~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~---~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
....++|+| .-+.++-.-.-+.+.++|++-..++....-..+ +..+..++..+.|+++=.||.+.+|-.+.
T Consensus 227 a~fity~a~faf~p-~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSP-HWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhHHHHHHhhhcCh-hhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 022467889 555555556788999999988777766643332 22333355778899999999999997655
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0012 Score=50.10 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=65.9
Q ss_pred ECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee
Q 017601 156 FSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR 235 (369)
Q Consensus 156 ~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~ 235 (369)
|..++...|+++ |.|..|++|+.+..+..+.....+..+..+. .++|+.+..+|+|-+||-.. .+-+
T Consensus 10 ~d~dg~~eLlvG-s~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~-------~~~F~Y~l~NGTVGvY~~~~-----RlWR 76 (111)
T PF14783_consen 10 FDGDGENELLVG-SDDFEIRVFKGDEIVAEITETDKVTSLCSLG-------GGRFAYALANGTVGVYDRSQ-----RLWR 76 (111)
T ss_pred cCCCCcceEEEe-cCCcEEEEEeCCcEEEEEecccceEEEEEcC-------CCEEEEEecCCEEEEEeCcc-----eeee
Confidence 444455678888 9999999999988777776554444444443 36899999999999998643 3334
Q ss_pred eeccCCCcEEEEEE---CCCC--cEEEEeCCCcEE
Q 017601 236 ICGSVGDILYAVCS---SSTG--NIAVAGADRTVT 265 (369)
Q Consensus 236 ~~~~~~~~v~~v~~---sp~g--~lasgs~D~~v~ 265 (369)
++.. ..+.++++ +-|| .|++|=.+|.|-
T Consensus 77 iKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4443 44666543 3445 899998888774
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.023 Score=50.45 Aligned_cols=201 Identities=13% Similarity=0.012 Sum_probs=112.1
Q ss_pred EEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEE
Q 017601 97 SIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDV 176 (369)
Q Consensus 97 ~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~l 176 (369)
++.|.+.. ..+..+--..+.|+.|+..+... ..+... +-.++++...++. ++++ .. +.+.+
T Consensus 4 gp~~d~~~---g~l~~~D~~~~~i~~~~~~~~~~----~~~~~~---------~~~G~~~~~~~g~-l~v~-~~-~~~~~ 64 (246)
T PF08450_consen 4 GPVWDPRD---GRLYWVDIPGGRIYRVDPDTGEV----EVIDLP---------GPNGMAFDRPDGR-LYVA-DS-GGIAV 64 (246)
T ss_dssp EEEEETTT---TEEEEEETTTTEEEEEETTTTEE----EEEESS---------SEEEEEEECTTSE-EEEE-ET-TCEEE
T ss_pred ceEEECCC---CEEEEEEcCCCEEEEEECCCCeE----EEEecC---------CCceEEEEccCCE-EEEE-Ec-CceEE
Confidence 45676632 23444433467788887764411 011111 1347888843444 4444 23 45666
Q ss_pred EeCCc-ceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcC--------CeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 177 YDQDI-HLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEG--------CQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 177 wd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d--------~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+|... .+..+.... ............+++++..+++.... +.|..++.. + +.......- ...+.
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~---~~~~~~~~~--~~pNG 138 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G---KVTVVADGL--GFPNG 138 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S---EEEEEEEEE--SSEEE
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C---eEEEEecCc--ccccc
Confidence 68653 333333331 11122222223344566655554422 457777766 3 332223333 66789
Q ss_pred EEECCCC-cE-EEEeCCCcEEEEeCCC-ce------eeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 247 VCSSSTG-NI-AVAGADRTVTIYDPRR-WS------ALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 247 v~~sp~g-~l-asgs~D~~v~vwD~~~-~~------~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
++|+|++ .| ++-+..+.|..||+.. +. .+..+..- ....-.+++.+ +|++.++.-..+.|.++|.+ ++
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SC
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-cc
Confidence 9999999 44 5667788899999853 21 12222322 23478899999 99998888888999999987 77
Q ss_pred eeEEEEcC
Q 017601 318 KVFAFRGD 325 (369)
Q Consensus 318 ~~~~~~g~ 325 (369)
.+..+.-.
T Consensus 216 ~~~~i~~p 223 (246)
T PF08450_consen 216 LLREIELP 223 (246)
T ss_dssp EEEEEE-S
T ss_pred EEEEEcCC
Confidence 77777543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0069 Score=57.32 Aligned_cols=247 Identities=12% Similarity=0.033 Sum_probs=135.0
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCC---------------cEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEEC
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYG---------------HLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFS 157 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g---------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (369)
..|.-+.|||.+ +.|.+...-+ ++.+||...+.- ...+...+. ...+|.-+.|+
T Consensus 72 ~~V~~~~fSP~~----kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i---v~sf~~~~q----~~~~Wp~~k~s 140 (561)
T COG5354 72 PDVKYLDFSPNE----KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI---VFSFNGISQ----PYLGWPVLKFS 140 (561)
T ss_pred CCceecccCccc----ceeeeeccCCccChhhccCCccccCceeEEeccCcee---EeeccccCC----cccccceeeee
Confidence 457888888874 5666653332 488999875521 111221111 12367668998
Q ss_pred CCCceeEEEEecccceEEEEeCCcceE--EEEeeeCCcceeeeccCCCCCCCCcEEEE-----EcCCeEEEEeCCcccCC
Q 017601 158 PSQWSMAAVARSFSKSIDVYDQDIHLR--TLRTLWYPSSLNFVQNLSPVNGGPNMLAV-----TEGCQLTIWDLRMKENG 230 (369)
Q Consensus 158 p~~~~~~a~~~s~d~~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~lla~-----s~d~~v~iwD~~~~~~~ 230 (369)
-++. ++|- =....+.|+++..... .+..+ .+..+.-+...|-++ +..|+.- +.+++++||.+..+
T Consensus 141 ~~D~-y~AR--vv~~sl~i~e~t~n~~~~p~~~l-r~~gi~dFsisP~~n-~~~la~~tPEk~~kpa~~~i~sIp~~--- 212 (561)
T COG5354 141 IDDK-YVAR--VVGSSLYIHEITDNIEEHPFKNL-RPVGILDFSISPEGN-HDELAYWTPEKLNKPAMVRILSIPKN--- 212 (561)
T ss_pred ecch-hhhh--hccCeEEEEecCCccccCchhhc-cccceeeEEecCCCC-CceEEEEccccCCCCcEEEEEEccCC---
Confidence 8544 3332 2335688998532211 11111 122233333333222 2233432 35789999998755
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEE-Ee----------CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCE
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAV-AG----------ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNY 298 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~las-gs----------~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~ 298 (369)
..+.+-..- ...=..+.|++.| .|.. .- ....+.|++++... +.....- .++|....|+| .++.
T Consensus 213 s~l~tk~lf-k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~-~~pVhdf~W~p-~S~~ 288 (561)
T COG5354 213 SVLVTKNLF-KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDL-KDPVHDFTWEP-LSSR 288 (561)
T ss_pred CeeeeeeeE-eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccc-cccceeeeecc-cCCc
Confidence 333321110 1122357788888 3221 11 02457788877332 2222244 78999999999 7776
Q ss_pred EEEE--ECCCeEEEEECcCCceeEEE-EcCCCeeeeeEcCCCCEEEEEeCC---CcEEEEECCCCcchhhhcc
Q 017601 299 IYVQ--GVDYEVFCGQWRESSKVFAF-RGDSNWLGFSKCSNRDVLGGWSDS---GSIFVADVVAKENEISALK 365 (369)
Q Consensus 299 l~s~--s~D~~i~vwd~~~~~~~~~~-~g~~~~~~~~~~~d~~~l~sgs~d---g~I~iWd~~~~~~~~~~l~ 365 (369)
++.. -++..+.++|++.+ +.+.+ .+.. ..+..++.+++++.++-| |.|-+||....-..+.++.
T Consensus 289 F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~r--NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~ 358 (561)
T COG5354 289 FAVISGYMPASVSVFDLRGN-LRFYFPEQKR--NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN 358 (561)
T ss_pred eeEEecccccceeecccccc-eEEecCCccc--ccccccCcccEEEEecCCccccceEEeccCCceEEEEEee
Confidence 5554 47889999999886 33333 2333 334445667777766554 6788888776654443443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0039 Score=62.51 Aligned_cols=192 Identities=19% Similarity=0.250 Sum_probs=115.5
Q ss_pred EECCCCceeEEEEecccceEEEEeCCcce-EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCC-----eEEEEeCCccc
Q 017601 155 CFSPSQWSMAAVARSFSKSIDVYDQDIHL-RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC-----QLTIWDLRMKE 228 (369)
Q Consensus 155 ~~~p~~~~~~a~~~s~d~~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~-----~v~iwD~~~~~ 228 (369)
+|++ +...++.+ +.+|.|.+++..-.. +.++...+. .+.++... ++-..|+++++|. .++|||+...+
T Consensus 30 c~~s-~~~~vvig-t~~G~V~~Ln~s~~~~~~fqa~~~s-iv~~L~~~---~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSS-STGSVVIG-TADGRVVILNSSFQLIRGFQAYEQS-IVQFLYIL---NKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcC-CCceEEEe-eccccEEEecccceeeehheecchh-hhhHhhcc---cCceEEEEEeecCCCCceEEEEecccccC
Confidence 5666 45678888 899999888765322 444333222 24444421 2224677788764 59999997542
Q ss_pred C---Ccee--eeeec-c---CCCcEEEEEECCCC-cEEEEeCCCcEEEEe--CCC--ceeeeeccccccCceEEEEEcCC
Q 017601 229 N---GGCL--HRICG-S---VGDILYAVCSSSTG-NIAVAGADRTVTIYD--PRR--WSALSRWVHCSKYEITGLSFSSI 294 (369)
Q Consensus 229 ~---~~~~--~~~~~-~---~~~~v~~v~~sp~g-~lasgs~D~~v~vwD--~~~--~~~~~~~~~h~~~~v~~l~~sp~ 294 (369)
. ..++ +++.. . ...++.+++.+.+- .+|+|=.+|.|..+- +-. +... .+....+++||++.|..
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-~~~~~~~~pITgL~~~~- 181 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-DYSHRGKEPITGLALRS- 181 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-eeeccCCCCceeeEEec-
Confidence 2 2344 12221 1 14678889999888 999999999999884 322 2211 22211258899999998
Q ss_pred CCCEEEEEECCCeEEEEECcCCc-eeEEEEcCCCeeeeeE--cCCCC--EEEEEeCCCcEEEEECCCCc
Q 017601 295 DSNYIYVQGVDYEVFCGQWRESS-KVFAFRGDSNWLGFSK--CSNRD--VLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 295 d~~~l~s~s~D~~i~vwd~~~~~-~~~~~~g~~~~~~~~~--~~d~~--~l~sgs~dg~I~iWd~~~~~ 358 (369)
++..++-...-..|.++.+.... ....+..|. .+... ..++. +++++ +..+++|+....+
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G--~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNG--ISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRG 246 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCcceeeeccCC--ccceeeecCCCCccEEEec--CceEEEEcCCCcc
Confidence 88875555566789999987533 234354444 23322 12333 44433 3568888876443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.019 Score=59.85 Aligned_cols=191 Identities=17% Similarity=0.227 Sum_probs=109.2
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
++|.++.|--+ ..-+..++..|.|.+-|..+..-++ .+.-+.|+.+.+|+|+.+ .++.. ....
T Consensus 69 ~~i~s~~fl~d----~~~i~v~~~~G~iilvd~et~~~ei-----------vg~vd~GI~aaswS~Dee-~l~li-T~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLAD----TNSICVITALGDIILVDPETLELEI-----------VGNVDNGISAASWSPDEE-LLALI-TGRQ 131 (1265)
T ss_pred cceEEEEEecc----cceEEEEecCCcEEEEcccccceee-----------eeeccCceEEEeecCCCc-EEEEE-eCCc
Confidence 68889998765 3566666778888887655331111 122245788899999554 55554 3445
Q ss_pred eEEEEeCC------cce-------------------EEEEee----------------------eCCcceeeeccCCCCC
Q 017601 173 SIDVYDQD------IHL-------------------RTLRTL----------------------WYPSSLNFVQNLSPVN 205 (369)
Q Consensus 173 ~i~lwd~~------~~~-------------------~~~~~~----------------------~~~~~v~~~~~~~~~~ 205 (369)
++-+.+-+ +.. ..++.. .+...+.|-
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR------- 204 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR------- 204 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-------
Confidence 55443210 110 111100 011112221
Q ss_pred CCCcEEEEE-----cC-CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEE---eCCCcEEEEeCCCcee-
Q 017601 206 GGPNMLAVT-----EG-CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVA---GADRTVTIYDPRRWSA- 274 (369)
Q Consensus 206 ~~~~lla~s-----~d-~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasg---s~D~~v~vwD~~~~~~- 274 (369)
.++.++|++ .+ ..|++||-. + .+........+.=.+++|-|.| ++|+- ..|..|.+|. |+|-.
T Consensus 205 gDg~~fAVs~~~~~~~~RkirV~drE-g----~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~h 278 (1265)
T KOG1920|consen 205 GDGEYFAVSFVESETGTRKIRVYDRE-G----ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRH 278 (1265)
T ss_pred cCCcEEEEEEEeccCCceeEEEeccc-c----hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccc
Confidence 234455542 24 789999976 3 1222111112334578999999 77774 3456788887 44433
Q ss_pred ---eeeccccccCceEEEEEcCCCCCEEEE---EECCCeEEEEECcC
Q 017601 275 ---LSRWVHCSKYEITGLSFSSIDSNYIYV---QGVDYEVFCGQWRE 315 (369)
Q Consensus 275 ---~~~~~~h~~~~v~~l~~sp~d~~~l~s---~s~D~~i~vwd~~~ 315 (369)
.-.+... ..+|..++|+. ++..|+. ......|++|-+.+
T Consensus 279 g~f~l~~p~d-e~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 279 GEFVLPFPLD-EKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cccccCCccc-ccchheeeecC-CCCceeeeecccccceEEEEEecC
Confidence 3334444 45599999999 9999887 44445599999877
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=66.41 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=79.7
Q ss_pred EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE-cCCCCEEEE
Q 017601 264 VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK-CSNRDVLGG 342 (369)
Q Consensus 264 v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~-~~d~~~l~s 342 (369)
|++.+..+.+...-+.+| ...|.+++|||.+..++..++.++.|+|.|+++..+...+..+....+... ..+..+|++
T Consensus 175 v~~l~~~~fkssq~lp~~-g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGE-GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhccccc-chhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEE
Confidence 667776666666667778 889999999995555899999999999999999888888877652222222 336788999
Q ss_pred EeCCCcEEEEECCCCcchhhhccc
Q 017601 343 WSDSGSIFVADVVAKENEISALKG 366 (369)
Q Consensus 343 gs~dg~I~iWd~~~~~~~~~~l~g 366 (369)
|-..|.|+|||++..+..+..+.+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVA 277 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhh
Confidence 999999999999988776555443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.03 Score=53.13 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=89.7
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEE--EeCCCcEEEEeCCCceeeeeccccccCceEEEEEcC
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAV--AGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSS 293 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~las--gs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp 293 (369)
..+.|++++.. .+.....- .++|..++|+|.+ .+++ |-.+-++.++|++.. ....+. ...=..+-|||
T Consensus 255 snLyl~~~~e~----~i~V~~~~-~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P---e~~rNT~~fsp 325 (561)
T COG5354 255 SNLYLLRITER----SIPVEKDL-KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP---EQKRNTIFFSP 325 (561)
T ss_pred ceEEEEeeccc----ccceeccc-cccceeeeecccCCceeEEecccccceeecccccc-eEEecC---CcccccccccC
Confidence 56888988743 22222121 4899999999999 6555 457889999999876 444443 23346688999
Q ss_pred CCCCEEEEEECCC---eEEEEECcCCc-eeEEEEcCCCeeeee-EcCCCCEEEEEe------CCCcEEEEECCCC
Q 017601 294 IDSNYIYVQGVDY---EVFCGQWRESS-KVFAFRGDSNWLGFS-KCSNRDVLGGWS------DSGSIFVADVVAK 357 (369)
Q Consensus 294 ~d~~~l~s~s~D~---~i~vwd~~~~~-~~~~~~g~~~~~~~~-~~~d~~~l~sgs------~dg~I~iWd~~~~ 357 (369)
.+++++.++-|+ .|-+||....- +...+.|-. .... .++|++++.+.. .|..|.|||+...
T Consensus 326 -~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 326 -HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred -cccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 999999988774 78999987644 333666655 3332 256888876654 4688999998644
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.016 Score=55.41 Aligned_cols=141 Identities=10% Similarity=0.031 Sum_probs=85.8
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeecc--CC-C---cEEEEEECC---CCcEEEEeCCCcEEEEeCCCceeeeec
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGS--VG-D---ILYAVCSSS---TGNIAVAGADRTVTIYDPRRWSALSRW 278 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~--~~-~---~v~~v~~sp---~g~lasgs~D~~v~vwD~~~~~~~~~~ 278 (369)
+.++.++.++.+..+|..++ +.+-..... .. . ....+.-+| ++.++.++.++.+..+|+.+++.+-+.
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G---~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQG---QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEcCCCEEEEEEccCC---hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 46666778899999998887 333222110 00 0 011111222 346777788999999999998765433
Q ss_pred cccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcC--CCCEEEEEeCCCcEEEEECCC
Q 017601 279 VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCS--NRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 279 ~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~--d~~~l~sgs~dg~I~iWd~~~ 356 (369)
.- .....+. . ++..++.++.|+.+..+|..+++.+=....-. ......+ .+..|+.++.||.|++.|..+
T Consensus 283 ~~---~~~~~~~--~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~sp~v~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 283 EY---GSVNDFA--V-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL--HRLLTAPVLYNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred cC---CCccCcE--E-ECCEEEEEcCCCeEEEEECCCCcEEEcccccC--CCcccCCEEECCEEEEEeCCCEEEEEECCC
Confidence 21 1111222 2 45678888899999999999886543322100 0011112 456778899999999999998
Q ss_pred Ccc
Q 017601 357 KEN 359 (369)
Q Consensus 357 ~~~ 359 (369)
|+.
T Consensus 355 G~~ 357 (394)
T PRK11138 355 GRF 357 (394)
T ss_pred CCE
Confidence 863
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=2.2e-05 Score=75.60 Aligned_cols=199 Identities=13% Similarity=0.134 Sum_probs=119.8
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccc-cCCCCCCCCCCeeEEEECCCCceeEEEEe---
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSV-LPQDCGVGEGSWSGLCFSPSQWSMAAVAR--- 168 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~p~~~~~~a~~~--- 168 (369)
-.+.|+++.-+. +.-++|.+..+|+|-+-.+..... . ...+ +++... -++++|++.+.+.+|.+=
T Consensus 57 qy~kcva~~y~~--d~cIlavG~atG~I~l~s~r~~hd---S-s~E~tp~~ar~-----Ct~lAwneLDtn~LAagldkh 125 (783)
T KOG1008|consen 57 QYVKCVASFYGN--DRCILAVGSATGNISLLSVRHPHD---S-SAEVTPGYARP-----CTSLAWNELDTNHLAAGLDKH 125 (783)
T ss_pred CCceeehhhcCC--chhhhhhccccCceEEeecCCccc---c-cceeccccccc-----ccccccccccHHHHHhhhhhh
Confidence 445677765543 246888888899998866542211 1 1111 222111 237999998777777651
Q ss_pred cccceEEEEeCCcceE------EEEe--eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC
Q 017601 169 SFSKSIDVYDQDIHLR------TLRT--LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~------~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
-.|..+.|||...... .+.. ......+.+.. +...++++.....++++|+|... .....+.
T Consensus 126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr------d~klvlaGm~sr~~~ifdlRqs~--~~~~svn--- 194 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR------DTKLVLAGMTSRSVHIFDLRQSL--DSVSSVN--- 194 (783)
T ss_pred cccCCccceecccccCCCccccccccccccCcccccccc------Ccchhhcccccchhhhhhhhhhh--hhhhhhh---
Confidence 1245799999864311 1111 11222222322 34577788888899999999541 1122222
Q ss_pred CCcEEEEEECCCC--cEEEEeCCCcEEEEe-CCCc-eeeeecccccc----CceEEEEEcCCCCCEEEEEECCC-eEEEE
Q 017601 241 GDILYAVCSSSTG--NIAVAGADRTVTIYD-PRRW-SALSRWVHCSK----YEITGLSFSSIDSNYIYVQGVDY-EVFCG 311 (369)
Q Consensus 241 ~~~v~~v~~sp~g--~lasgs~D~~v~vwD-~~~~-~~~~~~~~h~~----~~v~~l~~sp~d~~~l~s~s~D~-~i~vw 311 (369)
+..+..+...|-. ++++ ..|+.|.+|| .++- .++..+... + ..+..++|+|.....+++.+.|. +|+++
T Consensus 195 Tk~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~-~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 195 TKYVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQIILRN-ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred hhhcccceecCCCCCceec-cccCceeeccchhhhccHHHHHhhC-CCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 2455667778844 5555 4499999999 6653 334443322 2 34899999997777788888775 89999
Q ss_pred ECcC
Q 017601 312 QWRE 315 (369)
Q Consensus 312 d~~~ 315 (369)
|+..
T Consensus 273 di~~ 276 (783)
T KOG1008|consen 273 DICV 276 (783)
T ss_pred cccc
Confidence 9864
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00017 Score=42.54 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=34.2
Q ss_pred ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 272 WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 272 ~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
+++...+..| ...|.++.|++ ++..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~-~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGH-TGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEec-CCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 3556677788 88999999999 889999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.03 Score=53.56 Aligned_cols=136 Identities=17% Similarity=0.109 Sum_probs=87.6
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCce
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEI 286 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v 286 (369)
++.++.++.++.+..+|.+++ +.+-+.... . ...+.. .++.++.++.++.+..+|..+++.+-+...-.....
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG---~~~W~~~~~--~-~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 328 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSG---QIVWKREYG--S-VNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLL 328 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCC---CEEEeecCC--C-ccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcc
Confidence 457777888999999999988 444322211 1 111222 133777888999999999999876543221101112
Q ss_pred EEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcC--CCCEEEEEeCCCcEEEEEC
Q 017601 287 TGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCS--NRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 287 ~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~--d~~~l~sgs~dg~I~iWd~ 354 (369)
.+... .+.+|+.++.|+.+.+.|..+++.+..++-.. ..+...| .+..|+.++.||.|+.++.
T Consensus 329 ~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 329 TAPVL---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--SGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred cCCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--CcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 22222 24678889999999999999998887775432 1222223 4557888899999998764
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.003 Score=64.44 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=72.1
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeecc--CCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeee-eccccccCc
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGS--VGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALS-RWVHCSKYE 285 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~ 285 (369)
..+.|-.++.+..||.|... .+.+..-.+. ......|++-+.+|+||+|+.+|.||+|| +.+.... .+.+- ..+
T Consensus 544 ~tflGls~n~lfriDpR~~~-~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd-~~g~~AKT~lp~l-G~p 620 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSG-NKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYD-RLGKRAKTALPGL-GDP 620 (794)
T ss_pred ceEEEECCCceEEeccCCCC-CceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeec-ccchhhhhcCCCC-CCC
Confidence 44555667789999999753 1333211111 14678888888888999999999999999 4444443 44555 899
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
|.+|..+. ||++++..+ +..+.++|.
T Consensus 621 I~~iDvt~-DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTA-DGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eeEEEecC-CCcEEEEee-cceEEEEEE
Confidence 99999999 999987765 556667775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.025 Score=53.28 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=100.1
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC-cEEEEeCCCceeeeeccccccC
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR-TVTIYDPRRWSALSRWVHCSKY 284 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~-~v~vwD~~~~~~~~~~~~h~~~ 284 (369)
|..++.+| -|++.|.+.-.+ -.++ +.+. +.|.-..+.-++ -++.|..|| .+-|||.++++.. .+... -+
T Consensus 332 Gd~ia~VS-RGkaFi~~~~~~---~~iq-v~~~--~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~-lg 402 (668)
T COG4946 332 GDYIALVS-RGKAFIMRPWDG---YSIQ-VGKK--GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKD-LG 402 (668)
T ss_pred CcEEEEEe-cCcEEEECCCCC---eeEE-cCCC--CceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCC-cc
Confidence 44444454 577888776554 3332 3333 568777787777 888999999 8999999877644 44444 57
Q ss_pred ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC-CeeeeeEcCCCCEEEEEeCCC----cEEEEECCCCc
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS-NWLGFSKCSNRDVLGGWSDSG----SIFVADVVAKE 358 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~-~~~~~~~~~d~~~l~sgs~dg----~I~iWd~~~~~ 358 (369)
.|.++..+| +|++++.+-.-.++.+.|+.++.....-+... -...+...+++++||=+--+| .|+++|+.+++
T Consensus 403 ~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 403 NIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred ceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 899999999 99999888877899999999875533322221 113445567888888776665 78899998865
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=4.1e-05 Score=73.79 Aligned_cols=197 Identities=17% Similarity=0.161 Sum_probs=110.6
Q ss_pred EEEECCC-CceeEEEEecccceEEEEeCCc-ceEEEE-eeeCCcceeeeccCCCCCCCCcEEEEE----cCCeEEEEeCC
Q 017601 153 GLCFSPS-QWSMAAVARSFSKSIDVYDQDI-HLRTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVT----EGCQLTIWDLR 225 (369)
Q Consensus 153 ~l~~~p~-~~~~~a~~~s~d~~i~lwd~~~-~~~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s----~d~~v~iwD~~ 225 (369)
++++.-. +..++++| ..+|.|.+-.... +-.... +..+...++...+.+. |.+.|+++- .|..+.|||+.
T Consensus 61 cva~~y~~d~cIlavG-~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 61 CVASFYGNDRCILAVG-SATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred eehhhcCCchhhhhhc-cccCceEEeecCCcccccceecccccccccccccccc--cHHHHHhhhhhhcccCCccceecc
Confidence 4554433 33667777 8889998876532 111000 1111122222332222 233444442 26789999998
Q ss_pred cccCC-ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCce-eeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 226 MKENG-GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS-ALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 226 ~~~~~-~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~-~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
++-.. +.-..+........+++||-.+. ++.+|...+.++++|+|... ....+. +..+..+...|..++++++.
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCCCceecc
Confidence 76210 11111222124566789999777 89999999999999998421 122222 34567778888778998887
Q ss_pred ECCCeEEEEE-CcCC-ceeEEEEcCC-----CeeeeeEcC-CCCEEEEEeC-CCcEEEEECCC
Q 017601 303 GVDYEVFCGQ-WRES-SKVFAFRGDS-----NWLGFSKCS-NRDVLGGWSD-SGSIFVADVVA 356 (369)
Q Consensus 303 s~D~~i~vwd-~~~~-~~~~~~~g~~-----~~~~~~~~~-d~~~l~sgs~-dg~I~iWd~~~ 356 (369)
+ |+.|-+|| .++- .++..+.... +...+..|| ...++++.+. .++|+.+|+..
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 6 99999999 3331 1112111111 123455577 2334555554 58999998764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.054 Score=56.63 Aligned_cols=150 Identities=13% Similarity=0.170 Sum_probs=80.6
Q ss_pred EEEECCCCceeEEEEe---ccc-ceEEEEeCCcceEEEEeee--CCcceeeeccCCCCCCCCcEEEEE---cCCeEEEEe
Q 017601 153 GLCFSPSQWSMAAVAR---SFS-KSIDVYDQDIHLRTLRTLW--YPSSLNFVQNLSPVNGGPNMLAVT---EGCQLTIWD 223 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~---s~d-~~i~lwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~lla~s---~d~~v~iwD 223 (369)
.+.|.- ++.++|+.. ..+ +.|++||.+.......... -...+.|- |.|..+++.. +|+.|.+|.
T Consensus 200 ~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWk------Psgs~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 200 SISWRG-DGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWK------PSGSLIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred eEEEcc-CCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeec------CCCCeEeeeeecCCCCcEEEEe
Confidence 378877 445677631 234 8999999763332221110 11223332 3355555543 466899997
Q ss_pred CCcccCCceeeeeeccCCCcEEEEEECCCC-cEEE---EeCCCcEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCC
Q 017601 224 LRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAV---AGADRTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSN 297 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~las---gs~D~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~ 297 (369)
-..-..+.-.-.+... ...+..++|+.++ .||+ ......|++|-+.+ |-....+.-. +... +.|+|....
T Consensus 273 rNGL~hg~f~l~~p~d-e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~-~~~~--~~W~p~~~~ 348 (1265)
T KOG1920|consen 273 RNGLRHGEFVLPFPLD-EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS-QKAL--LMWDPVTEK 348 (1265)
T ss_pred cCCccccccccCCccc-ccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc-cccc--ccccCCCce
Confidence 4322111222222222 2458999999999 7776 44555599999887 3333333322 1112 777775444
Q ss_pred EEEEEECCCeEEEEEC
Q 017601 298 YIYVQGVDYEVFCGQW 313 (369)
Q Consensus 298 ~l~s~s~D~~i~vwd~ 313 (369)
.|..-..+|...+.|+
T Consensus 349 ~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 349 TLHVLRESGQRLVRDF 364 (1265)
T ss_pred eEEEEecCCcEEEEEE
Confidence 4554445665555554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0083 Score=59.78 Aligned_cols=188 Identities=11% Similarity=0.072 Sum_probs=113.2
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
..+.+.+.+++. ..++-+.-.|.+++++.+... ...+...+ . -..+..+++| |.
T Consensus 38 ~~D~is~~av~~------~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~------------~---~~~Gey~asC-S~ 91 (846)
T KOG2066|consen 38 QNDAISCCAVHD------KFFALGTHRGAVYLTTCQGNP----KTNFDHSS------------S---ILEGEYVASC-SD 91 (846)
T ss_pred hhhHHHHHHhhc------ceeeeccccceEEEEecCCcc----cccccccc------------c---ccCCceEEEe-cC
Confidence 457778888864 477778888999998776331 11111100 0 2245688888 99
Q ss_pred cceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 171 SKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 171 d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
||+|.|.... ....++........+.+.+.... ....++++++.-| +.++.-+--.+...+ .+... .++|.+++
T Consensus 92 DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~-~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~-eG~I~~i~ 167 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSR-QQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEG-EGPIHSIK 167 (846)
T ss_pred CCcEEEeeccCCccceeEecCCcceeEEeccchhh-hhhhheeecCcce-EEEehhhhhcCccce-eeecC-ccceEEEE
Confidence 9999887543 22222222222233333332111 1356899988888 878764322111222 12222 58999999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCce------EEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEI------TGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v------~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
|. | ++|=++.+| |+|||+.+.+.+..++.. ...+ ..+.|.+ +.+ | .-|.-.+|+|..++.
T Consensus 168 W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p-~~~~R~e~fpphl~W~~-~~~-L-VIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 168 WR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPP-SQSVRPELFPPHLHWQD-EDR-L-VIGWGDSVKICSIKK 234 (846)
T ss_pred ec--CcEEEEecCCC-cEEEeccccceeeccCCC-CCCCCcccCCCceEecC-CCe-E-EEecCCeEEEEEEec
Confidence 95 6 777777776 899999988887776644 2332 3577776 433 3 345777899998873
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0084 Score=59.25 Aligned_cols=92 Identities=16% Similarity=0.086 Sum_probs=62.6
Q ss_pred CCcEEEEeCCC-----ceeeeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCce------------eEEE
Q 017601 261 DRTVTIYDPRR-----WSALSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESSK------------VFAF 322 (369)
Q Consensus 261 D~~v~vwD~~~-----~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~~------------~~~~ 322 (369)
++.|.+.|.++ .+.+..+. - ......+++|| ||++++.++ .+.+|.|.|+.+.+. ....
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-V-GKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-V-PKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-C-CCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 57799999988 34444444 2 45678999999 999977765 589999999987432 1111
Q ss_pred E-cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 323 R-GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 323 ~-g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
. |-.. .......+|....|-.-|..|-.|++.+
T Consensus 372 evGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1 1110 1112233677888889999999999876
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00067 Score=62.17 Aligned_cols=92 Identities=13% Similarity=0.131 Sum_probs=74.8
Q ss_pred EEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCC
Q 017601 219 LTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDS 296 (369)
Q Consensus 219 v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~ 296 (369)
++..+.-+- +..+-+..+ +..|..++|||.. ++..++.+++|+|.|+++...+..+..+ ..+++++|.-.+.
T Consensus 175 v~~l~~~~f---kssq~lp~~-g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDF---KSSQILPGE-GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCc---chhhccccc-chhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCc
Confidence 666665544 344434444 6889999999988 7899999999999999999999888877 7899999998566
Q ss_pred CEEEEEECCCeEEEEECcCC
Q 017601 297 NYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 297 ~~l~s~s~D~~i~vwd~~~~ 316 (369)
++++.|-..|.|.|+|++..
T Consensus 249 h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ceeEEeccCceEEEEEccCC
Confidence 77888888999999999873
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0017 Score=65.38 Aligned_cols=137 Identities=13% Similarity=0.030 Sum_probs=95.3
Q ss_pred eeEEEEecccceEEEEeCCcceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEc---------CCeEEEEeCCcccCCc
Q 017601 162 SMAAVARSFSKSIDVYDQDIHLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTE---------GCQLTIWDLRMKENGG 231 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~---------d~~v~iwD~~~~~~~~ 231 (369)
..+.+| .-.|+|.+-|.... ++.++. .|...+..+. -.|+.|++||. |.-|++||+|+- +
T Consensus 188 r~lf~G-~t~G~V~LrD~~s~-~~iht~~aHs~siSDfD-----v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm---r 257 (1118)
T KOG1275|consen 188 RNLFCG-DTRGTVFLRDPNSF-ETIHTFDAHSGSISDFD-----VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM---R 257 (1118)
T ss_pred cEEEee-cccceEEeecCCcC-ceeeeeeccccceeeee-----ccCCeEEEeecccccccccccchhhhhhhhhh---h
Confidence 344444 78899999987643 222222 2444554444 35789999873 678999999988 5
Q ss_pred eeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC-cee-ee--eccccccCceEEEEEcCCCCCEEEEEECC
Q 017601 232 CLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR-WSA-LS--RWVHCSKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 232 ~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~-~~~-~~--~~~~h~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
.+..+.-+ ....-+.|.|.= .+++.+..|...+-|..+ ..+ .. .+... ...+.++++|+ +++.++-+-.+
T Consensus 258 al~PI~~~--~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~-~s~i~~fDiSs-n~~alafgd~~ 333 (1118)
T KOG1275|consen 258 ALSPIQFP--YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN-GSGISAFDISS-NGDALAFGDHE 333 (1118)
T ss_pred ccCCcccc--cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC-CCcceeEEecC-CCceEEEeccc
Confidence 55444444 222456788887 899999999999999443 222 22 22233 45699999999 99999999999
Q ss_pred CeEEEEE
Q 017601 306 YEVFCGQ 312 (369)
Q Consensus 306 ~~i~vwd 312 (369)
|.|.+|-
T Consensus 334 g~v~~wa 340 (1118)
T KOG1275|consen 334 GHVNLWA 340 (1118)
T ss_pred CcEeeec
Confidence 9999997
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.02 Score=56.65 Aligned_cols=95 Identities=18% Similarity=0.095 Sum_probs=68.1
Q ss_pred CCeEEEEeCCcccC--CceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCcee------------eeecc
Q 017601 216 GCQLTIWDLRMKEN--GGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSA------------LSRWV 279 (369)
Q Consensus 216 d~~v~iwD~~~~~~--~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~------------~~~~~ 279 (369)
+++|.+.|.++..+ .+.+..+... .....++++||| .++++..+.+|.|.|+++.+. +.+..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 46789999887100 0445555544 778889999999 556666799999999988543 22222
Q ss_pred ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 280 HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 280 ~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
- ...-...+|.+ +|+...|--.|..|-.||+..
T Consensus 373 v--GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 L--GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c--CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 1 12235678999 899888899999999999876
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.012 Score=56.78 Aligned_cols=74 Identities=8% Similarity=-0.005 Sum_probs=56.8
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+..|.+++++| +...|+.|+.||.|.+||...+..... +..-...-+..-++|.+++.|++.|.+++||++-..
T Consensus 259 ~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 259 PSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 77899999999 999999999999999999977533222 111100123335699999999999999999987654
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.11 Score=46.13 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=94.8
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCC-cceEEEEee--eCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTL--WYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRM 226 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~ 226 (369)
++|++|+|+...++|+. ...+.|--++.. +.++.+... ..+..++++. ++.++.+.+ ++++.++++..
T Consensus 24 ~SGLTy~pd~~tLfaV~-d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g-------~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQ-DEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLG-------NGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp EEEEEEETTTTEEEEEE-TTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-S-------TTEEEEEETTTTEEEEEEE--
T ss_pred ccccEEcCCCCeEEEEE-CCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEEC-------CCEEEEEEcCCCcEEEEEEec
Confidence 67999999878888888 778888777765 445555432 2345666664 346666664 78899998843
Q ss_pred ccCC---ceeeeeec----cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC---ceeee--e---c---cccccCceE
Q 017601 227 KENG---GCLHRICG----SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR---WSALS--R---W---VHCSKYEIT 287 (369)
Q Consensus 227 ~~~~---~~~~~~~~----~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~---~~~~~--~---~---~~h~~~~v~ 287 (369)
.... ..+..+.. .....+-.++|+|.+ .|..+-+....+||.++. ...+. . + ... ...+.
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~S 174 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF-VRDLS 174 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT---SS---
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce-ecccc
Confidence 2110 11222221 113558899999988 777777777777777653 11111 1 1 123 35688
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
+++++|..+.+++-......+..+| ..++.+..+
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 9999997777777777888999999 555554444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.002 Score=63.28 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=80.6
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc---------------eeeeeccccccCceEEEEEcCCCCCEEEEEECC
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRW---------------SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~---------------~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
....|++|+.+. ++|+|+.||.++|.-+.+. ..-+++.|| ...|.-+.|+. +.+.|-+...+
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH-~~sV~vvTWNe-~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH-NASVMVVTWNE-NNQKLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccC-cceEEEEEecc-ccccccccCCC
Confidence 778999999988 9999999999999876541 112467899 99999999999 77888888899
Q ss_pred CeEEEEECcCCceeEEE---EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 306 YEVFCGQWRESSKVFAF---RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~---~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
|-|.+|=+-.+.-...+ +..+-..++....||..|+..-+||.|.+=.+.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence 99999988664321111 111211233334478888888888777554443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.027 Score=42.91 Aligned_cols=90 Identities=23% Similarity=0.333 Sum_probs=65.1
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceE
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
..|+++++|..|++|+-. ..+..+... ..|.+++-...++++.|-.+|+|-+|+-.. .+-..+. +..++
T Consensus 16 ~eLlvGs~D~~IRvf~~~-----e~~~Ei~e~--~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRiKS--K~~~~ 84 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD-----EIVAEITET--DKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRIKS--KNQVT 84 (111)
T ss_pred ceEEEecCCcEEEEEeCC-----cEEEEEecc--cceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeeecc--CCCeE
Confidence 589999999999999754 567777766 889999887777999999999999998532 2222221 44577
Q ss_pred EEEEcCCCC--C-EEEEEECCCeE
Q 017601 288 GLSFSSIDS--N-YIYVQGVDYEV 308 (369)
Q Consensus 288 ~l~~sp~d~--~-~l~s~s~D~~i 308 (369)
++.+...++ . -|++|=.+|.|
T Consensus 85 ~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 85 SMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEEEEcCCCCCceEEEEEecCCeE
Confidence 777665332 2 47777677765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.049 Score=54.93 Aligned_cols=114 Identities=11% Similarity=0.098 Sum_probs=75.0
Q ss_pred cEEEEEcCCeEEEEeCCcc-cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee-eccccccCc
Q 017601 209 NMLAVTEGCQLTIWDLRMK-ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS-RWVHCSKYE 285 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~ 285 (369)
.++.|=.+|.|.++--.-- ++ .....+.+..+.+|+.++|..++ .+.-...-..|.+|.+....+.. .+..| ...
T Consensus 139 ~Iv~Gf~nG~V~~~~GDi~RDr-gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~ 216 (933)
T KOG2114|consen 139 TIVCGFTNGLVICYKGDILRDR-GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GIS 216 (933)
T ss_pred EEEEEecCcEEEEEcCcchhcc-ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC-Ccc
Confidence 3444446899988854311 11 22233444336899999999998 42333345679999988544444 46677 888
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE-cCC
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR-GDS 326 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~-g~~ 326 (369)
..+..|++..++ ++.+ .+..+.++|.......+.|. ||.
T Consensus 217 lnCss~~~~t~q-fIca-~~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 217 LNCSSFSDGTYQ-FICA-GSEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred ceeeecCCCCcc-EEEe-cCceEEEEcCCCcceeeeecCCCe
Confidence 999999983333 4433 35789999998877777886 776
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=38.81 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=30.8
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEe
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYD 268 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD 268 (369)
+++..+..+ ...|++++|++++ .+++++.|+.+++||
T Consensus 3 ~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGH-TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEec-CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445555544 5789999999998 999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0012 Score=65.94 Aligned_cols=92 Identities=12% Similarity=0.053 Sum_probs=73.7
Q ss_pred cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcC
Q 017601 215 EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSS 293 (369)
Q Consensus 215 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp 293 (369)
..|.|.||- .+| .+......+ -.+.++||+|.. .|+.|=.-|.+.+|...+.+.......| ..+|..+.|||
T Consensus 39 r~GSVtIfa-dtG---EPqr~Vt~P--~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th-~a~i~~l~wS~ 111 (1416)
T KOG3617|consen 39 RGGSVTIFA-DTG---EPQRDVTYP--VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETH-PAPIQGLDWSH 111 (1416)
T ss_pred CCceEEEEe-cCC---CCCcccccc--eehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCC-CCCceeEEecC
Confidence 367888884 345 333333333 557789999999 9999999999999998776655556678 99999999999
Q ss_pred CCCCEEEEEECCCeEEEEECc
Q 017601 294 IDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 294 ~d~~~l~s~s~D~~i~vwd~~ 314 (369)
+|+.++++-.-|.+.+|-..
T Consensus 112 -~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 112 -DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -CCCeEEEcCCCceeEEEEee
Confidence 99999999999999999765
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0044 Score=57.77 Aligned_cols=190 Identities=8% Similarity=-0.051 Sum_probs=115.5
Q ss_pred CceeEEEEecccceEEEEeCCc-ceEEE-Ee-eeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCceeee
Q 017601 160 QWSMAAVARSFSKSIDVYDQDI-HLRTL-RT-LWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHR 235 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~-~~~~~-~~-~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~ 235 (369)
...++.++ +.|+.++.|.-.. ..-.+ .. ..|-.- +.....+.++-.+.++++ |..++++|+..- ..+..
T Consensus 19 ka~fiiqA-SlDGh~KFWkKs~isGvEfVKhFraHL~~---I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~---Dminm 91 (558)
T KOG0882|consen 19 KAKFIIQA-SLDGHKKFWKKSRISGVEFVKHFRAHLGV---ILSLAVSYDGWLFRSVEDPDHSVKVFDVENF---DMINM 91 (558)
T ss_pred hhheEEee-ecchhhhhcCCCCccceeehhhhHHHHHH---HHhhhccccceeEeeccCcccceeEEEeecc---chhhh
Confidence 34567777 9999999996432 11111 00 001111 111112234555666677 999999998765 22222
Q ss_pred eeccC-CCcEEEEEECCCC---cEEEE-eCCCcEEEEeCCCce-e-eeeccccccCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 236 ICGSV-GDILYAVCSSSTG---NIAVA-GADRTVTIYDPRRWS-A-LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 236 ~~~~~-~~~v~~v~~sp~g---~lasg-s~D~~v~vwD~~~~~-~-~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
+...+ .+.+..+ .+|.. .||.+ -.++.+.++|-+... + ...-.-| ..+|..+.++| .+..++|.-..|-|
T Consensus 92 iKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH-~sPV~~i~y~q-a~Ds~vSiD~~gmV 168 (558)
T KOG0882|consen 92 IKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH-FSPVKKIRYNQ-AGDSAVSIDISGMV 168 (558)
T ss_pred cccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc-cCceEEEEeec-cccceeecccccee
Confidence 22210 1222221 23332 44443 457899999977633 3 3344457 99999999999 88899898888999
Q ss_pred EEEECcC------CceeEEEEcCC----------CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 309 FCGQWRE------SSKVFAFRGDS----------NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 309 ~vwd~~~------~~~~~~~~g~~----------~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
..|.... .+....++... .-.+++.++++..+.+-+.|..|+++++++++.
T Consensus 169 EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 169 EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred EeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 9998873 22222222111 113445567999999999999999999999874
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0067 Score=57.99 Aligned_cols=107 Identities=11% Similarity=0.143 Sum_probs=80.6
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC-----------CeEEEE
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD-----------YEVFCG 311 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D-----------~~i~vw 311 (369)
-+-+.|||-| +|++-..-| |.+|--.+...++.+. | ..|.-+.||| ..+||+|-|.. ..++||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H--p~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H--PGVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C--CCceeeecCC-ccceEEEecCCccccCcccCCCceEEEE
Confidence 4568999999 999887666 7899877777777766 4 4689999999 99999996631 478999
Q ss_pred ECcCCceeEEEEcC----CCeeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 312 QWRESSKVFAFRGD----SNWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 312 d~~~~~~~~~~~g~----~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
|+++|.+.+.|..- ..|--+..+.|++++|.-.. ..|.|++...
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps 335 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS 335 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc
Confidence 99999999888641 12222233668999987776 5678887654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.26 Score=44.74 Aligned_cols=179 Identities=17% Similarity=0.087 Sum_probs=101.7
Q ss_pred EEECCCCceeEEEEe---cccceEEEEeCCcceEEEEeee----CCcceeeeccCCCCCCCCcEEEE-------------
Q 017601 154 LCFSPSQWSMAAVAR---SFSKSIDVYDQDIHLRTLRTLW----YPSSLNFVQNLSPVNGGPNMLAV------------- 213 (369)
Q Consensus 154 l~~~p~~~~~~a~~~---s~d~~i~lwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~lla~------------- 213 (369)
-+|++++..++++-. ...+.|-|||.....+.+.... .|..+...+ |+..|+.+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p------DG~tLvVANGGI~Thpd~GR~ 129 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP------DGETLVVANGGIETHPDSGRA 129 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC------CCCEEEEEcCCCccCcccCce
Confidence 689996665555431 2247899999874333333222 345555443 45444443
Q ss_pred -----EcCCeEEEEeCCcccCCceeeeee----ccCCCcEEEEEECCCCcEEEEeC-CC-------cEEEEeCCCceeee
Q 017601 214 -----TEGCQLTIWDLRMKENGGCLHRIC----GSVGDILYAVCSSSTGNIAVAGA-DR-------TVTIYDPRRWSALS 276 (369)
Q Consensus 214 -----s~d~~v~iwD~~~~~~~~~~~~~~----~~~~~~v~~v~~sp~g~lasgs~-D~-------~v~vwD~~~~~~~~ 276 (369)
+.+..+.+-|.+++ +.+.... .+ .-.|.-++++++|.++.|.. .+ -|-+++ .++.+.
T Consensus 130 kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~-~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~ 203 (305)
T PF07433_consen 130 KLNLDTMQPSLVYLDARSG---ALLEQVELPPDLH-QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALR 203 (305)
T ss_pred ecChhhcCCceEEEecCCC---ceeeeeecCcccc-ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcce
Confidence 12334555666776 5554422 22 46788899999995555543 11 133333 333332
Q ss_pred eccc------cccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCC
Q 017601 277 RWVH------CSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSG 347 (369)
Q Consensus 277 ~~~~------h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg 347 (369)
.+.. -+...|-+|++++ ++..++..| .-+.+.+||..+++.+....-.. ..++....++ +++|.+...
T Consensus 204 ~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 204 LLPAPEEQWRRLNGYIGSIAADR-DGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred eccCChHHHHhhCCceEEEEEeC-CCCEEEEECCCCCEEEEEECCCCCEeeccccCc-eeeeeecCCc-eEEeCCCcc
Confidence 2221 1146799999999 888775555 56799999999998877764332 1233333344 666555433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.22 Score=48.17 Aligned_cols=212 Identities=15% Similarity=0.117 Sum_probs=96.9
Q ss_pred eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccce
Q 017601 94 EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKS 173 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~ 173 (369)
..+++.++|.+ ..++. ..+|.-.++..... ....+. . -...+|.+ + +.+|+- ....+
T Consensus 34 ~p~~ls~npng----r~v~V-~g~geY~iyt~~~~----r~k~~G-~----------g~~~vw~~-~-n~yAv~-~~~~~ 90 (443)
T PF04053_consen 34 YPQSLSHNPNG----RFVLV-CGDGEYEIYTALAW----RNKAFG-S----------GLSFVWSS-R-NRYAVL-ESSST 90 (443)
T ss_dssp --SEEEE-TTS----SEEEE-EETTEEEEEETTTT----EEEEEE-E-----------SEEEE-T-S-SEEEEE--TTS-
T ss_pred CCeeEEECCCC----CEEEE-EcCCEEEEEEccCC----cccccC-c----------eeEEEEec-C-ccEEEE-ECCCe
Confidence 36789999974 23333 45567777652211 000111 0 12578888 3 346666 45788
Q ss_pred EEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECC
Q 017601 174 IDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSS 251 (369)
Q Consensus 174 i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp 251 (369)
|.|+..-+ ..+.+.. +..+.-+- ++.++....++.|.+||+.++ +.+.++... +|..+.|++
T Consensus 91 I~I~kn~~~~~~k~i~~---~~~~~~If-------~G~LL~~~~~~~i~~yDw~~~---~~i~~i~v~---~vk~V~Ws~ 154 (443)
T PF04053_consen 91 IKIYKNFKNEVVKSIKL---PFSVEKIF-------GGNLLGVKSSDFICFYDWETG---KLIRRIDVS---AVKYVIWSD 154 (443)
T ss_dssp EEEEETTEE-TT--------SS-EEEEE--------SSSEEEEETTEEEEE-TTT-----EEEEESS----E-EEEEE-T
T ss_pred EEEEEcCccccceEEcC---CcccceEE-------cCcEEEEECCCCEEEEEhhHc---ceeeEEecC---CCcEEEEEC
Confidence 99974321 1122222 22233232 145666666669999999998 888888753 489999999
Q ss_pred CC-cEEEEeCCCcEEEEeCCCc-----------eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc--
Q 017601 252 TG-NIAVAGADRTVTIYDPRRW-----------SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS-- 317 (369)
Q Consensus 252 ~g-~lasgs~D~~v~vwD~~~~-----------~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~-- 317 (369)
+| ++|..+. .++.|++.... ..+..+..- ...|.+..|-. | -++.+... .++. +-.|+
T Consensus 155 ~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~-d-~fiYtT~~--~lkY--l~~Ge~~ 226 (443)
T PF04053_consen 155 DGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVE-D-CFIYTTSN--HLKY--LVNGETG 226 (443)
T ss_dssp TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEET-T-EEEEE-TT--EEEE--EETTEEE
T ss_pred CCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEc-C-EEEEEcCC--eEEE--EEcCCcc
Confidence 99 7777764 46777774432 022222221 34577777765 4 33333322 5655 22222
Q ss_pred eeEEEEcCCCeeeee-EcCCCCEEEEEeCCCcEEEEECC
Q 017601 318 KVFAFRGDSNWLGFS-KCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 318 ~~~~~~g~~~~~~~~-~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
.+.++.-. .-+. ..+..+.++....|+.|..+.+.
T Consensus 227 ~i~~ld~~---~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 227 IIAHLDKP---LYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEE-SS-----EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred eEEEcCCc---eEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 12222111 1111 12344667777777777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0066 Score=60.87 Aligned_cols=181 Identities=17% Similarity=0.142 Sum_probs=103.7
Q ss_pred EEECCCCceeEEEEecc----cceEEEE-eCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcc
Q 017601 154 LCFSPSQWSMAAVARSF----SKSIDVY-DQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMK 227 (369)
Q Consensus 154 l~~~p~~~~~~a~~~s~----d~~i~lw-d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~ 227 (369)
.+|+|..+ ++|++ +. .|+|.|| |.+.+.+... .|..++.+.|+| ...+++.+ +-|.+.+|...+.
T Consensus 21 ~SWHPseP-lfAVA-~fS~er~GSVtIfadtGEPqr~Vt---~P~hatSLCWHp----e~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 21 SSWHPSEP-LFAVA-SFSPERGGSVTIFADTGEPQRDVT---YPVHATSLCWHP----EEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccCCCCc-eeEEE-EecCCCCceEEEEecCCCCCcccc---cceehhhhccCh----HHHHHhhccccceeEEEecCCc
Confidence 57889655 56666 33 4789998 5554333221 222222333333 23555555 4688999987765
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee--ecccc-ccCceE--EEEEcCCCCC----
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS--RWVHC-SKYEIT--GLSFSSIDSN---- 297 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~--~~~~h-~~~~v~--~l~~sp~d~~---- 297 (369)
..++....+..+|.-+.|||+| .+.++..-|.|.+|....-..+. .+-.| +...++ +...++ ++.
T Consensus 92 ----e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~-~~Ee~~~ 166 (1416)
T KOG3617|consen 92 ----ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSY-DREEKFK 166 (1416)
T ss_pred ----eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCC-ChHHhhh
Confidence 2333332225899999999999 99999999999999765322221 22223 112233 334455 422
Q ss_pred --EEEEEECCCeEE-EEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 298 --YIYVQGVDYEVF-CGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 298 --~l~s~s~D~~i~-vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
..+..+.++-+- .++++.....+... | .-.++|..++.+..+|+|+.-|-.
T Consensus 167 laKaaVtgDe~alD~~fnwk~~~a~rs~~-k------sgv~~g~~F~~~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 167 LAKAAVTGDESALDEPFNWKESLAERSDE-K------SGVPKGTEFLFAGKSGTVYYVDQN 220 (1416)
T ss_pred hhhhhccCchhhhcccccCccchhhcccc-c------cCCCCCcEEEEEcCCceEEEEcCC
Confidence 244555555554 66665422111110 1 113477788888899999887744
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.1 Score=50.46 Aligned_cols=135 Identities=12% Similarity=0.176 Sum_probs=73.5
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEE-eCCcccCCc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIW-DLRMKENGG 231 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iw-D~~~~~~~~ 231 (369)
.++++|.+ ..++++ .|+...||........ .........|+. .+.++.....++|.|+ ++. . .
T Consensus 37 ~ls~npng-r~v~V~--g~geY~iyt~~~~r~k--~~G~g~~~vw~~-------~n~yAv~~~~~~I~I~kn~~-~---~ 100 (443)
T PF04053_consen 37 SLSHNPNG-RFVLVC--GDGEYEIYTALAWRNK--AFGSGLSFVWSS-------RNRYAVLESSSTIKIYKNFK-N---E 100 (443)
T ss_dssp EEEE-TTS-SEEEEE--ETTEEEEEETTTTEEE--EEEE-SEEEE-T-------SSEEEEE-TTS-EEEEETTE-E----
T ss_pred eEEECCCC-CEEEEE--cCCEEEEEEccCCccc--ccCceeEEEEec-------CccEEEEECCCeEEEEEcCc-c---c
Confidence 69999954 455555 5788888874221111 111223334443 3567777778899996 443 2 2
Q ss_pred eeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 232 CLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 232 ~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
....+... ..+..+-. | +|+..+.+ .|.+||..+++.+.++... .|..|.||+ ++++++-.+.| ++.+
T Consensus 101 ~~k~i~~~--~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~-~g~~val~t~~-~i~i 169 (443)
T PF04053_consen 101 VVKSIKLP--FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSD-DGELVALVTKD-SIYI 169 (443)
T ss_dssp TT-----S--S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-T-TSSEEEEE-S--SEEE
T ss_pred cceEEcCC--cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEEC-CCCEEEEEeCC-eEEE
Confidence 22334433 33444422 7 66666654 8999999999999998854 489999999 99999888755 5666
Q ss_pred EECc
Q 017601 311 GQWR 314 (369)
Q Consensus 311 wd~~ 314 (369)
++.+
T Consensus 170 l~~~ 173 (443)
T PF04053_consen 170 LKYN 173 (443)
T ss_dssp EEE-
T ss_pred EEec
Confidence 6543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.52 Score=44.90 Aligned_cols=191 Identities=17% Similarity=0.170 Sum_probs=114.4
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCCcceEEEEee----eCCcceeeeccCCCCCCCCcEE-EEEcCCeEEEEeCCc
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTL----WYPSSLNFVQNLSPVNGGPNML-AVTEGCQLTIWDLRM 226 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~ll-a~s~d~~v~iwD~~~ 226 (369)
.++...|.+....+.- .....+...+.. ....-... ..+..+.. .+++..+. ....++.|.+.|..+
T Consensus 34 ~~v~~~~~g~~~~v~~-~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v------~~~~~~vyv~~~~~~~v~vid~~~ 105 (381)
T COG3391 34 GGVAVNPDGTQVYVAN-SGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAV------NPAGNKVYVTTGDSNTVSVIDTAT 105 (381)
T ss_pred ceeEEcCccCEEEEEe-ecCceeeecccc-cceeeeeccCCCccccceee------CCCCCeEEEecCCCCeEEEEcCcc
Confidence 3688888765555544 333345555443 11111111 11222222 23344344 444578999999877
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC---CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA---DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~---D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
. ...+...-. .....++++|++ .+..+.. ++++.+.|..+.+.+.+...- ..+ ..++++| ++..++..
T Consensus 106 ~---~~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-~~P-~~~a~~p-~g~~vyv~ 177 (381)
T COG3391 106 N---TVLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-NTP-TGVAVDP-DGNKVYVT 177 (381)
T ss_pred c---ceeeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-CCc-ceEEECC-CCCeEEEE
Confidence 6 566655543 466789999999 5544443 799999999998888775433 344 8999999 99965555
Q ss_pred -ECCCeEEEEECcCCceeE-----EEEcCCCeeeeeEcCCCCEEEEEeCC---CcEEEEECCCCc
Q 017601 303 -GVDYEVFCGQWRESSKVF-----AFRGDSNWLGFSKCSNRDVLGGWSDS---GSIFVADVVAKE 358 (369)
Q Consensus 303 -s~D~~i~vwd~~~~~~~~-----~~~g~~~~~~~~~~~d~~~l~sgs~d---g~I~iWd~~~~~ 358 (369)
..+++|.+.|.......+ ...-...-..+...++|..+...-.. +.+..-|..++.
T Consensus 178 ~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 478899999987765543 01111111233345577755544433 588888887764
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0078 Score=58.46 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=67.4
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceE-EEEEcCCCCCEEEEEECCCeEEEEECcCCcee
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT-GLSFSSIDSNYIYVQGVDYEVFCGQWRESSKV 319 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~-~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~ 319 (369)
..|.-+.|+|.- ++|.+..+|.|-+.-+. ++.+-++.-| ...++ +++|.| ||+.||.|=.||+|++-|+.++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p-~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP-GENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC-CCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 567888999998 99999999999998877 8888888877 66777 999999 9999999999999999999886554
Q ss_pred EE
Q 017601 320 FA 321 (369)
Q Consensus 320 ~~ 321 (369)
..
T Consensus 98 ~~ 99 (665)
T KOG4640|consen 98 VS 99 (665)
T ss_pred ec
Confidence 44
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.47 Score=42.54 Aligned_cols=157 Identities=13% Similarity=0.223 Sum_probs=97.1
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEe-CCcceEEEEe--eeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYD-QDIHLRTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRM 226 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd-~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~ 226 (369)
++++.|+|+...++++. ...-.|-=.+ .+..++++.. ...+..++++. ++.++.+.+ ++++.++-+..
T Consensus 88 vS~LTynp~~rtLFav~-n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-------~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 88 VSSLTYNPDTRTLFAVT-NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-------GNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccceeeCCCcceEEEec-CCCceEEEEecCCceEEEecccccCChhHeEEec-------CCEEEEEehhcceEEEEEEcC
Confidence 66899999888888887 3333332223 3456666543 34677888886 456666554 67777776553
Q ss_pred ccCCceee--eee-----ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCce-e--eeeccccc------cCceEEE
Q 017601 227 KENGGCLH--RIC-----GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS-A--LSRWVHCS------KYEITGL 289 (369)
Q Consensus 227 ~~~~~~~~--~~~-----~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~-~--~~~~~~h~------~~~v~~l 289 (369)
........ .+. .. ....-.++|+|.. .|..+=+-+-+.||.+.... . ++....+. -..|.++
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~-N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKK-NKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CccEEeccceEEeccccCCC-CcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 31101111 111 11 3557789999999 88888888888888766432 1 11111220 1347889
Q ss_pred EEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 290 SFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 290 ~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
.|.+..+.+|+-+-.++.+.-.|....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCC
Confidence 999867777777777788877776553
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.082 Score=50.89 Aligned_cols=138 Identities=21% Similarity=0.200 Sum_probs=75.7
Q ss_pred EEECCCCceeEEEEecccceEEEE--eCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-CC--eEEEEeCCccc
Q 017601 154 LCFSPSQWSMAAVARSFSKSIDVY--DQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GC--QLTIWDLRMKE 228 (369)
Q Consensus 154 l~~~p~~~~~~a~~~s~d~~i~lw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~--~v~iwD~~~~~ 228 (369)
-+|+|++..+ +.+...|+...|| |..... +..+.+...++. ...++|||..++.+++ .| .|.++|...+
T Consensus 243 P~fspDG~~l-~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~--~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~- 316 (425)
T COG0823 243 PAFSPDGSKL-AFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINT--SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS- 316 (425)
T ss_pred ccCCCCCCEE-EEEECCCCCccEEEEcCCCCc--ceecccCCcccc--CccCCCCCCEEEEEeCCCCCcceEEECCCCC-
Confidence 6899976554 4444778877777 543222 211222222222 2235688888888876 34 4666666654
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CCc--EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DRT--VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~~--v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
.+.++........ .-.|+||| +|+..+. +|. |.+.|+.++.....+.. ......-.|.| +++.+...+.
T Consensus 317 ---~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~--~~~~e~ps~~~-ng~~i~~~s~ 389 (425)
T COG0823 317 ---QVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS--TYLNESPSWAP-NGRMIMFSSG 389 (425)
T ss_pred ---ceeEeeccCCCCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc--cccCCCCCcCC-CCceEEEecc
Confidence 2233332211222 56799999 6665553 344 66677766554333332 23344556777 7777665443
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.012 Score=57.16 Aligned_cols=92 Identities=18% Similarity=0.167 Sum_probs=66.2
Q ss_pred ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE-EEEECCCC-cEEEEeCCCcEEEEeCCC
Q 017601 194 SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY-AVCSSSTG-NIAVAGADRTVTIYDPRR 271 (369)
Q Consensus 194 ~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~-~v~~sp~g-~lasgs~D~~v~vwD~~~ 271 (369)
.+.++.|. |.-..++.+..+|.|-+.-+. . +.+-++.-+ +..+. ++||.||| .||.|=.||+|++-|+.+
T Consensus 22 ~i~~~ewn---P~~dLiA~~t~~gelli~R~n-~---qRlwtip~p-~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 22 NIKRIEWN---PKMDLIATRTEKGELLIHRLN-W---QRLWTIPIP-GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ceEEEEEc---CccchhheeccCCcEEEEEec-c---ceeEeccCC-CCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 34444443 233466778888888888776 3 556666533 35555 99999999 999999999999999999
Q ss_pred ceeeeeccccccCceEEEEEcC
Q 017601 272 WSALSRWVHCSKYEITGLSFSS 293 (369)
Q Consensus 272 ~~~~~~~~~h~~~~v~~l~~sp 293 (369)
+..+....--....|..+-|++
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCceeccccccccchheeeccc
Confidence 8887763322256788888875
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0049 Score=52.74 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=82.4
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceE
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
.+++.+.|+.|+=++++... ..+-....+. .. +.+. .-+ .+++|+.||.|.+|...-.........- .....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k-~s~rse~~~~-e~--~~v~--~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHK-ESCRSERFID-EG--QRVV--TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESI 104 (238)
T ss_pred hhccccCCcccccchhhhhh-hhhhhhhhhh-cc--eeec--ccCceEEeecccceEEEecCCccchHHHhhhc-ccccc
Confidence 56677889999999887541 0111111111 01 2221 112 8999999999999987632111111111 11222
Q ss_pred EEEE-cCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE---cCCCCEEEEE--eCCCcEEEEECCCCc
Q 017601 288 GLSF-SSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK---CSNRDVLGGW--SDSGSIFVADVVAKE 358 (369)
Q Consensus 288 ~l~~-sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~d~~~l~sg--s~dg~I~iWd~~~~~ 358 (369)
.+-+ .-.++.+..+++.|+.||.|++..++.+-....|. ...... ...+++|+.+ |.|..++.|+++.-+
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~-~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN-FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeeecccc-CCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 2222 22255688899999999999999877665554444 111111 2256777777 888888888886543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.56 Score=41.67 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=101.7
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+-..++..|+|.|+. ..+.+..|..+.|+..+.+. + + .....+... +..-+|++.. ++ .++...
T Consensus 18 ~g~~~e~SGLTy~pd~---~tLfaV~d~~~~i~els~~G--~-v-lr~i~l~g~------~D~EgI~y~g-~~-~~vl~~ 82 (248)
T PF06977_consen 18 PGILDELSGLTYNPDT---GTLFAVQDEPGEIYELSLDG--K-V-LRRIPLDGF------GDYEGITYLG-NG-RYVLSE 82 (248)
T ss_dssp TT--S-EEEEEEETTT---TEEEEEETTTTEEEEEETT-----E-EEEEE-SS-------SSEEEEEE-S-TT-EEEEEE
T ss_pred CCccCCccccEEcCCC---CeEEEEECCCCEEEEEcCCC--C-E-EEEEeCCCC------CCceeEEEEC-CC-EEEEEE
Confidence 3445679999999974 46777778888887666531 1 1 112222221 2244788865 33 445542
Q ss_pred cccceEEEEeCCc-----ce---EEEEeeeC---CcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee
Q 017601 169 SFSKSIDVYDQDI-----HL---RTLRTLWY---PSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC 237 (369)
Q Consensus 169 s~d~~i~lwd~~~-----~~---~~~~~~~~---~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~ 237 (369)
-.++.+.+++.+. .. +.+..... ...+.-+. +++.++.|+.+-+..-..||.++.-.....+....
T Consensus 83 Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla---~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 83 ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLA---YDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEE---EETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEE---EcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 4588888887631 11 11211111 11222233 23446688887777667777765410001111110
Q ss_pred ---cc----CCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeecc--c--c----ccCceEEEEEcCCCCCEEE
Q 017601 238 ---GS----VGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWV--H--C----SKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 238 ---~~----~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~--~--h----~~~~v~~l~~sp~d~~~l~ 300 (369)
.. ....+.+++|+|.. +++.....+.|-.+| ++|+++..+. . | .-..--.|+|.+ +|++.+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEE
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEE
Confidence 00 03568899999987 777788899999999 6677765443 2 1 013567899999 886654
Q ss_pred EEECCCeEEEE
Q 017601 301 VQGVDYEVFCG 311 (369)
Q Consensus 301 s~s~D~~i~vw 311 (369)
+ |.-+..++|
T Consensus 238 v-sEpNlfy~f 247 (248)
T PF06977_consen 238 V-SEPNLFYRF 247 (248)
T ss_dssp E-ETTTEEEEE
T ss_pred E-cCCceEEEe
Confidence 4 566665554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.95 Score=43.55 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=45.9
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
+++..+++||+| .+|.-..+|.+.+....-.+.+.++.-........+.|.- +...++.- ...+.+....
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l~~--~~~l~lvg~~ 287 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVLSW--EDELLLVGPD 287 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEEEe--CCEEEEECCC
Confidence 789999999999 8888889999988876544454444422234566777776 44333332 4455555433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.92 Score=43.19 Aligned_cols=192 Identities=16% Similarity=0.143 Sum_probs=122.4
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE---cCCeEEEEeCCcc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT---EGCQLTIWDLRMK 227 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s---~d~~v~iwD~~~~ 227 (369)
++++++.+...++.. ..+..|.+.|.. ...........|..+.+- +++..+..+. .++++.+.|..+.
T Consensus 78 ~i~v~~~~~~vyv~~-~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~------~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 78 GVAVNPAGNKVYVTT-GDSNTVSVIDTATNTVLGSIPVGLGPVGLAVD------PDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred ceeeCCCCCeEEEec-CCCCeEEEEcCcccceeeEeeeccCCceEEEC------CCCCEEEEEecccCCceEEEEeCCCC
Confidence 688888777677766 667899999954 222333222244444443 3444444433 3688999998887
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEE-EeCCCcEEEEeCCCceeee-e---ccccccCceEEEEEcCCCCCEEEE
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAV-AGADRTVTIYDPRRWSALS-R---WVHCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~las-gs~D~~v~vwD~~~~~~~~-~---~~~h~~~~v~~l~~sp~d~~~l~s 301 (369)
+.+...... ..+ ..++++|+| .+.. -..+++|.+.|..+..... . ...- ...-..+.++| ++..+..
T Consensus 151 ---~~~~~~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~-~g~~~yV 223 (381)
T COG3391 151 ---KVTATIPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDP-DGNRVYV 223 (381)
T ss_pred ---eEEEEEecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECC-CCCEEEE
Confidence 666664432 234 889999999 4444 4589999999977655543 1 1111 23346789999 9997666
Q ss_pred EECC---CeEEEEECcCCceeEE-EEcCC-CeeeeeEcCCCCEEEEEeC-CCcEEEEECCCCc
Q 017601 302 QGVD---YEVFCGQWRESSKVFA-FRGDS-NWLGFSKCSNRDVLGGWSD-SGSIFVADVVAKE 358 (369)
Q Consensus 302 ~s~D---~~i~vwd~~~~~~~~~-~~g~~-~~~~~~~~~d~~~l~sgs~-dg~I~iWd~~~~~ 358 (369)
.-.. +.+...|..++..... +.... .-.++...++|..+..... .+.+.+-|..+..
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 5443 5899999888766554 22222 1134555778888887744 4889888887754
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.66 Score=41.43 Aligned_cols=200 Identities=16% Similarity=0.146 Sum_probs=103.4
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc------CCeEEEEeCCc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE------GCQLTIWDLRM 226 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~------d~~v~iwD~~~ 226 (369)
+++|+|.-+.-++.++-.-.-..+||........ +......-.|.-+..|++|+ .++.+++ -|.|-|||.+.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv-~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV-TLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcE-EEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEeccc
Confidence 5888887777777775555556778865322111 11122233355555677765 5555554 26899999985
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC------------------CCcEEEEeCCCceeeee--cc--cccc
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA------------------DRTVTIYDPRRWSALSR--WV--HCSK 283 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~------------------D~~v~vwD~~~~~~~~~--~~--~h~~ 283 (369)
+ -+.+..+..+ +-....+.|.+|| .++.+.. .-++.+.|..++..+.+ +. -+ .
T Consensus 150 ~--fqrvgE~~t~-GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~-~ 225 (366)
T COG3490 150 G--FQRVGEFSTH-GIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR-Q 225 (366)
T ss_pred c--cceecccccC-CcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh-h
Confidence 4 2455556554 4455678899999 5555432 11344445455555432 22 22 3
Q ss_pred CceEEEEEcCCCCCEEEEEECCCe-----EEEEECcCCceeEEEEcCC-------Ceee-eeEcC-CCCEEEEEeCCCcE
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYE-----VFCGQWRESSKVFAFRGDS-------NWLG-FSKCS-NRDVLGGWSDSGSI 349 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~-----i~vwd~~~~~~~~~~~g~~-------~~~~-~~~~~-d~~~l~sgs~dg~I 349 (369)
-.|..++.-+ |++.+.-+-.-|- -.+--...++.+.-+.-.. ++.+ +.... ++...+|.=..+..
T Consensus 226 lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 LSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred cceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 4566666666 6665544332221 0011111122222221100 0111 11111 45555565566777
Q ss_pred EEEECCCCcc
Q 017601 350 FVADVVAKEN 359 (369)
Q Consensus 350 ~iWd~~~~~~ 359 (369)
.+||.++|..
T Consensus 305 vi~da~tG~v 314 (366)
T COG3490 305 VIWDAATGAV 314 (366)
T ss_pred EEEEcCCCcE
Confidence 8999999874
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.11 Score=50.09 Aligned_cols=146 Identities=18% Similarity=0.079 Sum_probs=83.5
Q ss_pred CCCCCcEEEEE--c-C-CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcE--EEEeCCCceee
Q 017601 204 VNGGPNMLAVT--E-G-CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTV--TIYDPRRWSAL 275 (369)
Q Consensus 204 ~~~~~~lla~s--~-d-~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v--~vwD~~~~~~~ 275 (369)
++++..++..+ . . ..+.++|+.++.... +..+. +.-..-+|+||| .+.+...|+.. .++|+..++ +
T Consensus 201 s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~~~----g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~ 274 (425)
T COG0823 201 SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILNFN----GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-L 274 (425)
T ss_pred CcCCCceEEEEEecCCCceEEEEeccCCccce-eeccC----CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-c
Confidence 34555555543 2 2 369999999884322 22222 334456899999 55566667765 555777665 3
Q ss_pred eeccccccCceEEEEEcCCCCCEEEEEEC-CCe--EEEEECcCCce-eEEEEcCCCeeeeeEcCCCCEEEEEeC-CCc--
Q 017601 276 SRWVHCSKYEITGLSFSSIDSNYIYVQGV-DYE--VFCGQWRESSK-VFAFRGDSNWLGFSKCSNRDVLGGWSD-SGS-- 348 (369)
Q Consensus 276 ~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~--i~vwd~~~~~~-~~~~~g~~~~~~~~~~~d~~~l~sgs~-dg~-- 348 (369)
..+..- .+.-+.=.|+| ||+.++-.|. .|. |.+.|+..+.. ..++.+-.. ..-..++||++|+-.+. +|.
T Consensus 275 ~~Lt~~-~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~-~~p~~SpdG~~i~~~~~~~g~~~ 351 (425)
T COG0823 275 PRLTNG-FGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN-SNPVWSPDGDKIVFESSSGGQWD 351 (425)
T ss_pred eecccC-CccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC-cCccCCCCCCEEEEEeccCCcee
Confidence 334433 33344678999 9999877654 444 55556655433 222322221 12223569998886664 344
Q ss_pred EEEEECCCCc
Q 017601 349 IFVADVVAKE 358 (369)
Q Consensus 349 I~iWd~~~~~ 358 (369)
|.+.|..++.
T Consensus 352 i~~~~~~~~~ 361 (425)
T COG0823 352 IDKNDLASGG 361 (425)
T ss_pred eEEeccCCCC
Confidence 5666665554
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.08 Score=50.81 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=68.5
Q ss_pred EEEEcCCeEEEEeCCcccCCceeeeeecc-C--CCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeee-ccccccCce
Q 017601 211 LAVTEGCQLTIWDLRMKENGGCLHRICGS-V--GDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSR-WVHCSKYEI 286 (369)
Q Consensus 211 la~s~d~~v~iwD~~~~~~~~~~~~~~~~-~--~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~-~~~h~~~~v 286 (369)
+.+-+|..|.=||+|-.... .+...+.+ + .....|++-..+|+||+||.+|.|++||- .+....+ +.+- ..+|
T Consensus 398 lvGLs~n~vfriDpRv~~~~-kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgL-G~~I 474 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKN-KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGL-GDAI 474 (644)
T ss_pred EEeecCCceEEecccccCcc-eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccccc-CCce
Confidence 33456788999999955321 22222221 1 35677777777779999999999999995 5555544 5555 8899
Q ss_pred EEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 287 TGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 287 ~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
..|..+. ||..++..+ +.++.+-|+
T Consensus 475 ~hVdvta-dGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 475 KHVDVTA-DGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeEEeec-cCcEEEEec-ccEEEEEEE
Confidence 9999999 999987655 566666665
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0083 Score=61.67 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=69.9
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCce
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEI 286 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v 286 (369)
..++.+++.|.+-..|++..- ++...-... +++|.+++|+.+| .++.|-.+|.|.+||+.+++.++.+..| ..+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL--~~~~~ne~v-~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-~ap~ 175 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL--GPLHQNERV-QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-GAPV 175 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc--chhhcCCcc-CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-CCcc
Confidence 356677888899999987642 232222222 6899999999999 8899999999999999999998888766 5554
Q ss_pred EEEE---EcCCCCCEEEEEECCCeEEEEE
Q 017601 287 TGLS---FSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 287 ~~l~---~sp~d~~~l~s~s~D~~i~vwd 312 (369)
+++- +.. ++..++++-.-|. +|.
T Consensus 176 t~vi~v~~t~-~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 176 TGVIFVGRTS-QNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ceEEEEEEeC-CCcEEEEccCCCc--eEE
Confidence 4443 333 4456666655554 554
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.48 Score=43.90 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=77.4
Q ss_pred ceEEEEeCCc------ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 172 KSIDVYDQDI------HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 172 ~~i~lwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
|.|.+|++.. .++.+........+..+... ++. +.++.++.|.+|++...+ +....-..+....+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-----~~~-lv~~~g~~l~v~~l~~~~--~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-----NGR-LVVAVGNKLYVYDLDNSK--TLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-----TTE-EEEEETTEEEEEEEETTS--SEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-----CCE-EEEeecCEEEEEEccCcc--cchhhheecceEEEE
Confidence 7788887755 33333333233333333321 235 455556899999998773 133322222124566
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeecc-ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
++... + +++.|...+.+.++..+. ...+..+. ......++++.|-+ +++.++.+..++.+.++....
T Consensus 134 sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 134 SLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-S
T ss_pred EEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECC
Confidence 66443 5 899999999998874432 22222222 11134688999986 667899999999999998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.013 Score=50.13 Aligned_cols=137 Identities=8% Similarity=0.030 Sum_probs=84.8
Q ss_pred cccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE-
Q 017601 169 SFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV- 247 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v- 247 (369)
+.|+.|+-+++.+.....+........ +.-+ .-+..++.++.+|.|.+|....-. .....+... ...|-++
T Consensus 37 sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~----~~~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~-~e~i~~~I 108 (238)
T KOG2444|consen 37 SADGLVRERKVRKHKESCRSERFIDEG-QRVV----TASAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSG-EESIDLGI 108 (238)
T ss_pred cCCcccccchhhhhhhhhhhhhhhhcc-eeec----ccCceEEeecccceEEEecCCccc--hHHHhhhcc-cccceecc
Confidence 678888888876544333322211222 1110 113477788899999999876220 111111111 1333332
Q ss_pred EECCCC-cEEEEeCCCcEEEEeCCCceeeeecccccc-CceEEEEEcCCCCCEEEEE--ECCCeEEEEECcC
Q 017601 248 CSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSK-YEITGLSFSSIDSNYIYVQ--GVDYEVFCGQWRE 315 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~-~~v~~l~~sp~d~~~l~s~--s~D~~i~vwd~~~ 315 (369)
.--.++ +..+++.|+.|+.|++.-.+.+...-.| . .++..+..+. .++.++++ |.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h-~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH-NFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccc-cCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 222333 7788999999999999888877777777 6 5666666666 67778887 8888899998876
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.028 Score=55.41 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=76.0
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceee-----eecc-
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL-----SRWV- 279 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~-----~~~~- 279 (369)
+..++-+++-|.+.+|+-..++ -......+. ...+..++.|++. ++|.|+..|.|.++-+....+- ..+.
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~-~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~ 121 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGE--MRKLKNEGA-TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDK 121 (726)
T ss_pred CceEEEecccceEEEEecCchh--hhcccccCc-cceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccc
Confidence 4567778888999999866552 112222222 3566677889999 8899999999999987763321 1111
Q ss_pred ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 280 HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 280 ~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
.| +..|++++|++ |+..+++|-.-|.|.+-.+..
T Consensus 122 ~~-~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 122 SH-KCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cC-CceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence 35 78999999999 999999999999988877665
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.71 Score=42.71 Aligned_cols=132 Identities=21% Similarity=0.271 Sum_probs=79.2
Q ss_pred CeEEEEeCCcc-c---CCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCce-eeeeccccccCceEEEEE
Q 017601 217 CQLTIWDLRMK-E---NGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWS-ALSRWVHCSKYEITGLSF 291 (369)
Q Consensus 217 ~~v~iwD~~~~-~---~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~-~~~~~~~h~~~~v~~l~~ 291 (369)
|.|.++++... . +.+.+...... ++|++++-- ++.|+++. .+.|.+|++...+ ....-.-+....++++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~--g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK--GPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES--S-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec--CcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999873 1 11223333344 889999654 44544444 4789999998776 433222221346666665
Q ss_pred cCCCCCEEEEEECCCeEEEEECcC-CceeEEEEc--CCCee-eeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 292 SSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRG--DSNWL-GFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 292 sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g--~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
.. ++++.|.....+.++.++. +..+..+.. ...|. .+....+++.++.+..+|.+.++...
T Consensus 138 ~~---~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 138 FK---NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ET---TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cc---cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 54 6888888888888876654 222333322 22221 22224366799999999999999875
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.2 Score=42.79 Aligned_cols=170 Identities=12% Similarity=0.066 Sum_probs=86.5
Q ss_pred eEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc---CCceeeeeeccCCCcEEEEE
Q 017601 173 SIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE---NGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 173 ~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~---~~~~~~~~~~~~~~~v~~v~ 248 (369)
.|+||+.. +.+..+... ...+..+.+. ++..|+.+..||++++||+.... -+..+...... ...+....
T Consensus 62 ~I~iys~sG~ll~~i~w~--~~~iv~~~wt----~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~-e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWD--SGRIVGMGWT----DDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVL-ECRIFAIW 134 (410)
T ss_pred EEEEECCCCCEeEEEEEC--CCCEEEEEEC----CCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcc-cccccccc
Confidence 59999864 555554332 2455555542 25689999999999999997331 00111111111 12233344
Q ss_pred ECCCC-cEEEEeCCCcEEEE-eCCCceeee---eccccc----c-CceEE-EEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 249 SSSTG-NIAVAGADRTVTIY-DPRRWSALS---RWVHCS----K-YEITG-LSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vw-D~~~~~~~~---~~~~h~----~-~~v~~-l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
|..+| .+.++ ++.+.+. +........ ...+.. . ..+.. ..++. +....+....+..+.+-+-....
T Consensus 135 ~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 135 FYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred cCCCCEEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEccccc
Confidence 55567 44443 3333332 222110111 111110 0 01111 23444 45555555556666644433211
Q ss_pred eeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 318 KVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 318 ~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
. ...+..+..+..++++++||.-..+|.+.|....
T Consensus 212 ~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 212 Q---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred c---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 1 2233455777778899999999999999888654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.023 Score=36.20 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=28.8
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCcee
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSA 274 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~ 274 (369)
..|.+++|+|.. +||.|..||.|.+|.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 679999999999 9999999999999998 5554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.3 Score=40.65 Aligned_cols=192 Identities=14% Similarity=0.055 Sum_probs=101.8
Q ss_pred EEECCCCceeEEEEecccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 154 LCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 154 l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
-.|.+....++.+- -..+.|.-||.. ...+.+........+.... .++.|+++. . .+.++|..++.....
T Consensus 30 P~w~~~~~~L~w~D-I~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d------~~g~Lv~~~-~-g~~~~~~~~~~~~t~ 100 (307)
T COG3386 30 PVWDPDRGALLWVD-ILGGRIHRLDPETGKKRVFPSPGGFSSGALID------AGGRLIACE-H-GVRLLDPDTGGKITL 100 (307)
T ss_pred ccCcCCCCEEEEEe-CCCCeEEEecCCcCceEEEECCCCcccceeec------CCCeEEEEc-c-ccEEEeccCCceeEE
Confidence 34566444444443 566778888764 3344433322222333332 234455443 3 366777755521111
Q ss_pred eeeee-ccCCCcEEEEEECCCCcEEEEeCC------------CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEE
Q 017601 233 LHRIC-GSVGDILYAVCSSSTGNIAVAGAD------------RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYI 299 (369)
Q Consensus 233 ~~~~~-~~~~~~v~~v~~sp~g~lasgs~D------------~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l 299 (369)
+.... .......+.+...|+|.+..+... |.|+-+|. .+..+..+..+ -..-++|+||| |++.|
T Consensus 101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~-~~~~NGla~Sp-Dg~tl 177 (307)
T COG3386 101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD-LTIPNGLAFSP-DGKTL 177 (307)
T ss_pred eccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCc-EEecCceEECC-CCCEE
Confidence 11111 111245677888999944444333 23444454 46666666666 55668999999 99877
Q ss_pred EEEEC-CCeEEEEECcC------CceeEEEEcC--CCeeeeeEcCCCCEEEEEeCCC-cEEEEECCCCc
Q 017601 300 YVQGV-DYEVFCGQWRE------SSKVFAFRGD--SNWLGFSKCSNRDVLGGWSDSG-SIFVADVVAKE 358 (369)
Q Consensus 300 ~s~s~-D~~i~vwd~~~------~~~~~~~~g~--~~~~~~~~~~d~~~l~sgs~dg-~I~iWd~~~~~ 358 (369)
+.+-. .+.|.-+++.. ++..+.+... ..-.++..-.+|.+.+++-.+| .|.+|+.. ++
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~ 245 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK 245 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc
Confidence 76654 57888888763 2221222111 1113333334777775554544 89999887 44
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.58 Score=41.19 Aligned_cols=107 Identities=9% Similarity=0.003 Sum_probs=72.4
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceE
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
.++-++..+.+.--|.+++ +..-+-.. +..|-+-+.- -| .++.|...|.+++.+..+|+....+... ..-=.
T Consensus 25 ~v~igSHs~~~~avd~~sG---~~~We~il--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~ 97 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSG---NLIWEAIL--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKV 97 (354)
T ss_pred EEEEecCCceEEEecCCCC---cEEeehhh--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhcc
Confidence 3344556677777777776 43322111 1344333322 24 7999999999999999999887766644 21112
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
.....+ ++..+..++.|++.+..|.++..++...+
T Consensus 98 ~a~~d~-~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 98 RAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ceEEcC-CCceEEEecCCCcEEEecccccceEEecc
Confidence 233455 88999999999999999999988877764
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.082 Score=52.26 Aligned_cols=134 Identities=15% Similarity=0.072 Sum_probs=78.1
Q ss_pred CceeEEEEecccceEEEEeCCc-ceEEEEeee--CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCcee--e
Q 017601 160 QWSMAAVARSFSKSIDVYDQDI-HLRTLRTLW--YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCL--H 234 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~--~ 234 (369)
....++.| +.-|.+.+|.-.. ..+.++... ....+..+. +++..+++++..|.|.++-+........+ .
T Consensus 44 t~~~l~~G-sS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs-----~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 44 TEEYLAMG-SSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVS-----SVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred CCceEEEe-cccceEEEEecCchhhhcccccCccceEEEEEec-----chhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 34577887 7789999998642 222222211 111222222 33445566777889999987754221222 2
Q ss_pred eeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc----eeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 235 RICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW----SALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 235 ~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~----~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
.....+...|+|++|++++ .+.+|...|+|.+-.+... ...+.+..- .++|..+.... +.+|++.
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~-ds~IVQlD~~q--~~LLVSt 187 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE-DSEIVQLDYLQ--SYLLVST 187 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc-CcceEEeeccc--ceehHhh
Confidence 2221114789999999999 9999999999987766551 112222233 46777777654 3444443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.62 E-value=1.6 Score=39.19 Aligned_cols=226 Identities=16% Similarity=0.109 Sum_probs=119.7
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEE-
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLR- 187 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~- 187 (369)
..|+.+..+| +++++...... ...+... ..+.-+..-|.-+.+++.+ |+.+.++++........
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~-----~~~i~~~------~~I~ql~vl~~~~~llvLs---d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSK-----PTRILKL------SSITQLSVLPELNLLLVLS---DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred CEEEEEECCC-EEEEEecCCcc-----ceeEeec------ceEEEEEEecccCEEEEEc---CCccEEEEchhhcccccc
Confidence 4555556777 99998832211 0011000 0144677777555555544 59999998752221110
Q ss_pred -------------eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC-C-ceeeeeeccCCCcEEEEEECCC
Q 017601 188 -------------TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN-G-GCLHRICGSVGDILYAVCSSST 252 (369)
Q Consensus 188 -------------~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~-~-~~~~~~~~~~~~~v~~v~~sp~ 252 (369)
.......+.++. ......+...+.++...+|.||....... . +..+.+... ..+.+++|.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~f~-~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~~~ 149 (275)
T PF00780_consen 73 APLAFPKSRSLPTKLPETKGVSFFA-VNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFLGN 149 (275)
T ss_pred ccccccccccccccccccCCeeEEe-eccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEeCC
Confidence 111122333333 11113356777777778999998876422 2 356667766 88999999833
Q ss_pred CcEEEEeCCCcEEEEeCCCceeeeecccc-----------ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeE-
Q 017601 253 GNIAVAGADRTVTIYDPRRWSALSRWVHC-----------SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVF- 320 (369)
Q Consensus 253 g~lasgs~D~~v~vwD~~~~~~~~~~~~h-----------~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~- 320 (369)
.++.|..+ ...+.|+.++....-+... ...++..+..+ ++.+|++ .|..-.+-|... +..+
T Consensus 150 -~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~--~~~~g~fv~~~G-~~~r~ 222 (275)
T PF00780_consen 150 -KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLC--YDNIGVFVNKNG-EPSRK 222 (275)
T ss_pred -EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEE--ecceEEEEcCCC-CcCcc
Confidence 55555544 4777899876554332211 01233334443 3455553 344444445433 2222
Q ss_pred ---EEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcc
Q 017601 321 ---AFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALK 365 (369)
Q Consensus 321 ---~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~ 365 (369)
.+.... ..+.. ...+|+....++ |.||++.+++. ++.+.
T Consensus 223 ~~i~W~~~p--~~~~~--~~pyli~~~~~~-iEV~~~~~~~l-vQ~i~ 264 (275)
T PF00780_consen 223 STIQWSSAP--QSVAY--SSPYLIAFSSNS-IEVRSLETGEL-VQTIP 264 (275)
T ss_pred cEEEcCCch--hEEEE--ECCEEEEECCCE-EEEEECcCCcE-EEEEE
Confidence 111111 11111 456887776655 99999999863 45544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.3 Score=49.01 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=49.8
Q ss_pred cEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCCEEEEEECC------CeEEEEECcC-Ccee--EEEEcCCCeeee
Q 017601 263 TVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD------YEVFCGQWRE-SSKV--FAFRGDSNWLGF 331 (369)
Q Consensus 263 ~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D------~~i~vwd~~~-~~~~--~~~~g~~~~~~~ 331 (369)
++..||+++ |+.+..+... ......+.+ ++++.+.||.+ ..+..+|..+ .+-. ..+.... ...
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--~~~ 506 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTG-TIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--SAL 506 (557)
T ss_pred eEEEECCCCCeEeecCCCCcc-cccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--ccc
Confidence 577899876 4444444322 222222222 55777777754 2456788776 3322 2221111 111
Q ss_pred eE-cCCCCEEEEEeCCC--cEEEEECCCCc
Q 017601 332 SK-CSNRDVLGGWSDSG--SIFVADVVAKE 358 (369)
Q Consensus 332 ~~-~~d~~~l~sgs~dg--~I~iWd~~~~~ 358 (369)
.. ..++.+.+.|+.|+ .+..||..+.+
T Consensus 507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 507 HTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeEEECCEEEEEeeecceeehhhcCccccc
Confidence 11 22788999999888 78888887765
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.6 Score=40.38 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=68.7
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC---------CCcEEEEEECCCC-cEEEEe---CCC-------cEEE
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV---------GDILYAVCSSSTG-NIAVAG---ADR-------TVTI 266 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~---------~~~v~~v~~sp~g-~lasgs---~D~-------~v~v 266 (369)
++.++-.+..|.|+--|+.... .+....+..-. .+.-.-+++++.. +|.+-. .++ .|-+
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 4567768888888888876441 11222222100 0112235666654 443322 222 3777
Q ss_pred EeCCCceeeeeccccccCceEEEEEcCCCCC-EEEEEE-CCCeEEEEECcCCceeEEEEc
Q 017601 267 YDPRRWSALSRWVHCSKYEITGLSFSSIDSN-YIYVQG-VDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 267 wD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~-~l~s~s-~D~~i~vwd~~~~~~~~~~~g 324 (369)
+|+.+++.+..+.. ..++.+|..+. +.+ +|+..+ .++.+.+||..+++.++...+
T Consensus 274 ~D~~t~krv~Ri~l--~~~~~Si~Vsq-d~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 274 YDLKTHKRVARIPL--EHPIDSIAVSQ-DDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTTTEEEEEEEE--EEEESEEEEES-SSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EECCCCeEEEEEeC--CCccceEEEcc-CCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 79999999998883 24688999998 544 565554 578999999999999988854
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.051 Score=56.21 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=69.8
Q ss_pred cEEEEeCCCcEEEEeCCCc-eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC-Ceeee
Q 017601 254 NIAVAGADRTVTIYDPRRW-SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS-NWLGF 331 (369)
Q Consensus 254 ~lasgs~D~~v~vwD~~~~-~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~-~~~~~ 331 (369)
.++.|+..|.|-..|++.. .+.+. ..+..++|++++|+. +|+.++.|-.+|-|.+||+.+++.++.+.-|. +-.++
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~-ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQ-NERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhc-CCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 7889999999999997753 22222 223368999999999 99999999999999999999988877775333 00122
Q ss_pred eE---cCCCCEEEEEeCCCcEEEEEC
Q 017601 332 SK---CSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 332 ~~---~~d~~~l~sgs~dg~I~iWd~ 354 (369)
.. ..++..+.++..-|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 22 235667888877776 5654
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.41 Score=49.29 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=83.7
Q ss_pred cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCC-------C-cEEEEeCCCcEEEEeCCCce-eeeecccc---c
Q 017601 215 EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSST-------G-NIAVAGADRTVTIYDPRRWS-ALSRWVHC---S 282 (369)
Q Consensus 215 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-------g-~lasgs~D~~v~vwD~~~~~-~~~~~~~h---~ 282 (369)
....|.-.|+..| +.+..+..+...+|..+ .|+ . ....|-.++.+..||+|-.. .+..-..| .
T Consensus 502 ~~~~ly~mDLe~G---KVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 502 NPNKLYKMDLERG---KVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred CCCceEEEecCCC---cEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 4578888999988 89998886622334444 443 2 56778888999999999732 22111111 1
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc-CCCeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG-DSNWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g-~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
....++++-+. + .+||.||.+|.||+||--..+....|.| .....++....||++|++.+. ..+.+++.
T Consensus 577 ~~~Fs~~aTt~-~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTE-D-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCCceEEEecC-C-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 34466666665 4 5789999999999999433222233333 122345555679999876654 45666665
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.1 Score=43.13 Aligned_cols=70 Identities=13% Similarity=-0.031 Sum_probs=42.0
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEE---EeCCCcee-e---eeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTI---YDPRRWSA-L---SRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~v---wD~~~~~~-~---~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
..|.++.||||| ++|.-. ++.|.+ -....++. + ..+..-+...+.++.|.+ ++.++ .+..+....+|.+
T Consensus 448 g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 448 GPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred CCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec-CCEEE-EEecCCCCceEEE
Confidence 679999999999 666655 466766 33233431 1 112222134468999999 87754 5455554555554
Q ss_pred c
Q 017601 314 R 314 (369)
Q Consensus 314 ~ 314 (369)
.
T Consensus 525 ~ 525 (591)
T PRK13616 525 N 525 (591)
T ss_pred e
Confidence 3
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.88 Score=43.97 Aligned_cols=139 Identities=15% Similarity=0.069 Sum_probs=84.7
Q ss_pred CCcEEE-EEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC---cE-----EEEeCCCcEEEEeCCCc-e-ee
Q 017601 207 GPNMLA-VTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG---NI-----AVAGADRTVTIYDPRRW-S-AL 275 (369)
Q Consensus 207 ~~~lla-~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g---~l-----asgs~D~~v~vwD~~~~-~-~~ 275 (369)
.+.|+. ......+.=-|+..| +.+..+..+ ..|+-+.+.|+. .+ +.|-.|+.|.=||+|-. . .+
T Consensus 345 snlil~~~~~~~~l~klDIE~G---KIVeEWk~~--~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERG---KIVEEWKFE--DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred cceEeeCCCCcCcceeeecccc---eeeeEeecc--CCcceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 334443 334456777788888 888888876 668888999886 33 45677889999999852 2 22
Q ss_pred eeccccccC----ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC-CeeeeeEcCCCCEEEEEeCCCcEE
Q 017601 276 SRWVHCSKY----EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS-NWLGFSKCSNRDVLGGWSDSGSIF 350 (369)
Q Consensus 276 ~~~~~h~~~----~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~-~~~~~~~~~d~~~l~sgs~dg~I~ 350 (369)
..-++| +. ...|.+-. ...+++.||.+|.||+||--..+....|.|-. ....+....||++|++.+. ..+.
T Consensus 420 ~~~q~k-qy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLl 495 (644)
T KOG2395|consen 420 AVVQSK-QYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLL 495 (644)
T ss_pred eeeecc-ccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEE
Confidence 223333 21 23333333 34688999999999999963322222233322 1133444568888876554 4555
Q ss_pred EEEC
Q 017601 351 VADV 354 (369)
Q Consensus 351 iWd~ 354 (369)
+-++
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 5554
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.99 Score=45.38 Aligned_cols=181 Identities=15% Similarity=0.183 Sum_probs=92.9
Q ss_pred ceeEEEEeccc------ceEEEEeCCcceE-EEEee---eCCcceeeeccCCCCCCCCcEEEEEcC------CeEEEEeC
Q 017601 161 WSMAAVARSFS------KSIDVYDQDIHLR-TLRTL---WYPSSLNFVQNLSPVNGGPNMLAVTEG------CQLTIWDL 224 (369)
Q Consensus 161 ~~~~a~~~s~d------~~i~lwd~~~~~~-~~~~~---~~~~~v~~~~~~~~~~~~~~lla~s~d------~~v~iwD~ 224 (369)
+.+++++ +.+ ..+..||...... .+... .....+..+. +..++++|.| .++..||.
T Consensus 285 ~~l~~vG-G~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-------~~lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 285 GKLVAVG-GYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-------GKLYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CeEEEEC-CCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-------CEEEEEccccCCCcccceEEEecC
Confidence 4566666 444 4678888754422 11111 1122333333 3456667766 46888999
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC-----cEEEEeCCC--ceeeeeccccccCceEEEEEcCCCC
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR-----TVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDS 296 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~-----~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~ 296 (369)
++.. ...+..+... ..... ++ .-+| ..|+||.|| +|-.||.++ |..+..+... ....-.+.+ ++
T Consensus 357 ~~~~-W~~~a~M~~~-R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~---~g 428 (571)
T KOG4441|consen 357 RTNQ-WTPVAPMNTK-RSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-RSGHGVAVL---GG 428 (571)
T ss_pred CCCc-eeccCCccCc-cccce-eE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-eeeeEEEEE---CC
Confidence 8762 1122222211 11111 11 1256 888999887 478888876 4444433322 233333333 67
Q ss_pred CEEEEEECCC------eEEEEECcCCceeEE--EEcCCCeeeeeEcCCCCEEEEEeCCCc-----EEEEECCCCc
Q 017601 297 NYIYVQGVDY------EVFCGQWRESSKVFA--FRGDSNWLGFSKCSNRDVLGGWSDSGS-----IFVADVVAKE 358 (369)
Q Consensus 297 ~~l~s~s~D~------~i~vwd~~~~~~~~~--~~g~~~~~~~~~~~d~~~l~sgs~dg~-----I~iWd~~~~~ 358 (369)
.+.+.||.|+ ++..+|..++.-... +.-...+.++. .-++.+.+.|+.|+. |..+|.++.+
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 8888888665 456777766432211 11111001111 126777777777763 6667776643
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.8 Score=42.76 Aligned_cols=113 Identities=10% Similarity=-0.005 Sum_probs=66.7
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC-----CcE--EEEEECCCCcEEEEeCCCcEEEEeCCCceeeeecc
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG-----DIL--YAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWV 279 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~-----~~v--~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~ 279 (369)
++.+..++.++.|.-.|.+++ +.+-++..... ..+ ..++...++.++.++.++.|.-+|.++++.+-++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG---~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG---KVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC---hhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 456777777899999999888 44433322100 001 01122112577888899999999999998876655
Q ss_pred ccccCc--eEEEEEcCC-CCCEEEEEE---------CCCeEEEEECcCCceeEEEE
Q 017601 280 HCSKYE--ITGLSFSSI-DSNYIYVQG---------VDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 280 ~h~~~~--v~~l~~sp~-d~~~l~s~s---------~D~~i~vwd~~~~~~~~~~~ 323 (369)
.. ... -..+.-+|. .+..++.++ .++.+..+|..+++.+-.+.
T Consensus 138 ~~-~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 138 NN-DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CC-CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 33 110 011222221 224455543 36789999999988776664
|
The alignment model contains an 8-bladed beta-propeller. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.41 E-value=4.2 Score=40.15 Aligned_cols=145 Identities=12% Similarity=0.140 Sum_probs=87.5
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc------EE-EEEECCCCcEEEEe---------CCCcEEEEeCCC
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI------LY-AVCSSSTGNIAVAG---------ADRTVTIYDPRR 271 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~------v~-~v~~sp~g~lasgs---------~D~~v~vwD~~~ 271 (369)
+.++.++.++.|.-+|.+++ +.+-++... .. +. +..+. ++.++.++ .++.+..+|..+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG---~~~W~~~~~--~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~T 184 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETG---KQVWKFGNN--DQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVET 184 (488)
T ss_pred CeEEEecCCCeEEEEECCCC---CEeeeecCC--CCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCC
Confidence 57777888999999999998 555444332 11 11 11121 24455554 367889999999
Q ss_pred ceeeeeccccccC-------------------ce-EEEEEcCCCCCEEEEEECCC------------------eEEEEEC
Q 017601 272 WSALSRWVHCSKY-------------------EI-TGLSFSSIDSNYIYVQGVDY------------------EVFCGQW 313 (369)
Q Consensus 272 ~~~~~~~~~h~~~-------------------~v-~~l~~sp~d~~~l~s~s~D~------------------~i~vwd~ 313 (369)
++.+-.+...... .+ .+.++.+ .+..++.++.|+ .|.-+|.
T Consensus 185 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~ 263 (488)
T cd00216 185 GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA 263 (488)
T ss_pred CceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC
Confidence 8876654421010 01 1233344 456666776554 7999999
Q ss_pred cCCceeEEEEc--CCCee--e-----eeEc--CCCC---EEEEEeCCCcEEEEECCCCcc
Q 017601 314 RESSKVFAFRG--DSNWL--G-----FSKC--SNRD---VLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 314 ~~~~~~~~~~g--~~~~~--~-----~~~~--~d~~---~l~sgs~dg~I~iWd~~~~~~ 359 (369)
++++.+=.++. |..|. . +... -++. .++.++.+|.++..|.++|+.
T Consensus 264 ~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 264 DTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred CCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 99887766642 22111 0 0111 1333 688899999999999999874
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.25 E-value=3.7 Score=36.35 Aligned_cols=102 Identities=10% Similarity=0.003 Sum_probs=63.5
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCc
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYE 285 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~ 285 (369)
++.++.+...+.+.+.+.+++ .....+.....-.+.+. ..+++ .+..|+.|++.+..|.++..++.+.+-- ...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tG---s~~w~f~~~~~vk~~a~-~d~~~glIycgshd~~~yalD~~~~~cVykskcg-G~~ 137 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTG---SQIWNFVILETVKVRAQ-CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG-GGT 137 (354)
T ss_pred CCEEEEEEccCcEEEEEecch---hheeeeeehhhhccceE-EcCCCceEEEecCCCcEEEecccccceEEecccC-Cce
Confidence 346777888999999999998 44444433201223332 35677 9999999999999999998888876533 222
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
-.+-...| -...|..+...|.+.--..+
T Consensus 138 f~sP~i~~-g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 138 FVSPVIAP-GDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred eccceecC-CCceEEEEeccceEEEEccC
Confidence 22334444 22344445555555443433
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.20 E-value=1.3 Score=42.84 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=52.5
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc-------------------ccCceEEEEEcCCC--CCEE
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC-------------------SKYEITGLSFSSID--SNYI 299 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h-------------------~~~~v~~l~~sp~d--~~~l 299 (369)
-.|+-+..++.| .++-.+.+|.+.++=.+.+..-..++.. ..-.+..++|+|.. ..+|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 357788889999 8888899998776654432222111110 01346678999943 4678
Q ss_pred EEEECCCeEEEEECcCCcee
Q 017601 300 YVQGVDYEVFCGQWRESSKV 319 (369)
Q Consensus 300 ~s~s~D~~i~vwd~~~~~~~ 319 (369)
..-+.|++||+||+.....+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 88889999999999774443
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.85 Score=43.55 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=53.1
Q ss_pred CCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeee--ccc-----cccCceEEEEEcCC----CC---CEEEEEECCC
Q 017601 241 GDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSR--WVH-----CSKYEITGLSFSSI----DS---NYIYVQGVDY 306 (369)
Q Consensus 241 ~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~--~~~-----h~~~~v~~l~~sp~----d~---~~l~s~s~D~ 306 (369)
.++|++++.|.-|.+|.|.++|++.|.|+|....+.. +.. .....|+++.|+-. |+ -.|+.|...|
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG 165 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence 5899999998777999999999999999998766654 222 21346888988721 22 3577788889
Q ss_pred eEEEEECc
Q 017601 307 EVFCGQWR 314 (369)
Q Consensus 307 ~i~vwd~~ 314 (369)
.+.+|.+.
T Consensus 166 ~v~~fkIl 173 (395)
T PF08596_consen 166 NVLTFKIL 173 (395)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999875
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.11 E-value=4.2 Score=36.47 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=81.4
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeec-------
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRW------- 278 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~------- 278 (369)
++.|+.|+++| +.+++.+.. .....+... ..|..+..-|+- .+++- .|+.+.++|+........-
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~---~~~~~i~~~--~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDP---SKPTRILKL--SSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CCEEEEEECCC-EEEEEecCC---ccceeEeec--ceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccc
Confidence 56778888888 999998433 222333333 559999888876 43333 3599999998764433311
Q ss_pred -------cccccCceEEEE-EcCCCCCEEEEEECCCeEEEEECcCC-----ceeEEEEcCCCeeeeeEcCCCCEEEEEeC
Q 017601 279 -------VHCSKYEITGLS-FSSIDSNYIYVQGVDYEVFCGQWRES-----SKVFAFRGDSNWLGFSKCSNRDVLGGWSD 345 (369)
Q Consensus 279 -------~~h~~~~v~~l~-~sp~d~~~l~s~s~D~~i~vwd~~~~-----~~~~~~~g~~~~~~~~~~~d~~~l~sgs~ 345 (369)
... ...+...+ -....+...+.....++|.+|.+... +..+.+.-......+... ++.|+.|..
T Consensus 80 ~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccc-cCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC
Confidence 011 22344444 11224555556667779999998763 344444333322333333 566666664
Q ss_pred CCcEEEEECCCCc
Q 017601 346 SGSIFVADVVAKE 358 (369)
Q Consensus 346 dg~I~iWd~~~~~ 358 (369)
++ ..+.|+.++.
T Consensus 157 ~~-f~~idl~~~~ 168 (275)
T PF00780_consen 157 KG-FYLIDLNTGS 168 (275)
T ss_pred Cc-eEEEecCCCC
Confidence 44 6777887654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.22 Score=31.70 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=27.7
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
..+|..++|+| ...+||.+..||.|.++.+
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC
Confidence 46799999999 9999999999999999987
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.91 E-value=6.3 Score=37.86 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=85.7
Q ss_pred CCCceeEEEEecccceEEEEeCCcce----EEEEeeeCCcceeeeccCCCC-CCCCcEEEEEcCCeEEEEeCCcccCC--
Q 017601 158 PSQWSMAAVARSFSKSIDVYDQDIHL----RTLRTLWYPSSLNFVQNLSPV-NGGPNMLAVTEGCQLTIWDLRMKENG-- 230 (369)
Q Consensus 158 p~~~~~~a~~~s~d~~i~lwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~~~~lla~s~d~~v~iwD~~~~~~~-- 230 (369)
+++...|++| |..|.++||+..... ..+-..+-...+--+....|. ......+++-.-..+.||.+......
T Consensus 34 ~~~~d~IivG-S~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVG-SYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEe-ccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 4455678888 999999999864211 112112222233333333332 22456788888899999998432111
Q ss_pred ----cee-eeeeccCCCcEEEEEECCCC------cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEE
Q 017601 231 ----GCL-HRICGSVGDILYAVCSSSTG------NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYI 299 (369)
Q Consensus 231 ----~~~-~~~~~~~~~~v~~v~~sp~g------~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l 299 (369)
-.+ ..+.|+-....+.++.-|-| .|.+=+.||++.+|+-+...-...+.+. -----+.|.| .-..+
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~--llPgPl~Y~~-~tDsf 189 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF--LLPGPLCYCP-RTDSF 189 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC--CCCcCeEEee-cCCEE
Confidence 011 12233223455666665544 6888899999999996654333333322 1112355666 55667
Q ss_pred EEEECCCeEEEEEC
Q 017601 300 YVQGVDYEVFCGQW 313 (369)
Q Consensus 300 ~s~s~D~~i~vwd~ 313 (369)
++++.+..+..+..
T Consensus 190 vt~sss~~l~~Yky 203 (418)
T PF14727_consen 190 VTASSSWTLECYKY 203 (418)
T ss_pred EEecCceeEEEecH
Confidence 77777777777653
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.80 E-value=4 Score=40.25 Aligned_cols=107 Identities=13% Similarity=0.073 Sum_probs=64.6
Q ss_pred CCCcEEEEEcCCeEEEEeCC--cccCCceeeeeeccCC--CcE--EEEEECCCC-cEEEEeCCCcEEEEeCCC--ceeee
Q 017601 206 GGPNMLAVTEGCQLTIWDLR--MKENGGCLHRICGSVG--DIL--YAVCSSSTG-NIAVAGADRTVTIYDPRR--WSALS 276 (369)
Q Consensus 206 ~~~~lla~s~d~~v~iwD~~--~~~~~~~~~~~~~~~~--~~v--~~v~~sp~g-~lasgs~D~~v~vwD~~~--~~~~~ 276 (369)
+...|+|+-....|.+|.+. ..++.+.+....-+-+ -+| ..+.|+|.. .|++-.....=.+++++. .....
T Consensus 71 ~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka 150 (671)
T PF15390_consen 71 DTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA 150 (671)
T ss_pred CCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEE
Confidence 34589999999999999987 3333333322111101 111 345699998 665544433334566654 22333
Q ss_pred eccccccCceEEEEEcCCCCCEEEEEEC-CCeEEEEECcC
Q 017601 277 RWVHCSKYEITGLSFSSIDSNYIYVQGV-DYEVFCGQWRE 315 (369)
Q Consensus 277 ~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~~~ 315 (369)
.+++ .+-|.+.+|.+ ||+.|+.+-. -=.-++||-..
T Consensus 151 Di~~--~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 151 DIKT--SGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eccC--CceEEEEEecC-cCCEEEEEeCCeEEEEEecCch
Confidence 4544 47799999999 9998877543 33568898543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.68 E-value=6.9 Score=37.52 Aligned_cols=248 Identities=10% Similarity=0.029 Sum_probs=116.8
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCc----EEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGH----LIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
-.+....+||++ ..++.+.|..|. ++++|+.++ ..+.. .+.. ....++.|.+++..++.+.-
T Consensus 124 ~~~~~~~~Spdg---~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d---~i~~-------~~~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 124 VSLGGFSVSPDG---KRLAYSLSDGGSEWYTLRVFDLETG-KFLPD---GIEN-------PKFSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEEEEETTTS---SEEEEEEEETTSSEEEEEEEETTTT-EEEEE---EEEE-------EESEEEEECTTSSEEEEEEC
T ss_pred EEeeeeeECCCC---CEEEEEecCCCCceEEEEEEECCCC-cCcCC---cccc-------cccceEEEeCCCCEEEEEEe
Confidence 344567888885 355667677665 889998765 11111 1100 00123899997777666652
Q ss_pred cc---------cceEEEEeCCcceEE---E-EeeeCCcceeeeccCCCCCCCCcEEE-EEc--C-CeEEEEeCCccc-CC
Q 017601 169 SF---------SKSIDVYDQDIHLRT---L-RTLWYPSSLNFVQNLSPVNGGPNMLA-VTE--G-CQLTIWDLRMKE-NG 230 (369)
Q Consensus 169 s~---------d~~i~lwd~~~~~~~---~-~~~~~~~~v~~~~~~~~~~~~~~lla-~s~--d-~~v~iwD~~~~~-~~ 230 (369)
.. ...|..|+++..... + ...........+. .++|+..++. ... + ..+.+.|+..+. ..
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~---~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVS---RSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEE---E-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred CcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEE---ecCcccEEEEEEEccccCCeEEEEeccccCCCc
Confidence 22 334778887643221 1 1111122011111 2345555443 332 3 457888887630 00
Q ss_pred ceeeeeeccCCCcEEEEEECCCC--cEEEE--eCCCcEEEEeCCCcee---eeeccccccCceEEEEEcCCCCCEEEE-E
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG--NIAVA--GADRTVTIYDPRRWSA---LSRWVHCSKYEITGLSFSSIDSNYIYV-Q 302 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g--~lasg--s~D~~v~vwD~~~~~~---~~~~~~h~~~~v~~l~~sp~d~~~l~s-~ 302 (369)
.....+.....+..+.+... .+ ++.+- ...+.|...++.+... ...+..| ...+.-..+.. .+.+|+. .
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~-~~~~~l~~~~~-~~~~Lvl~~ 343 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE-DEDVSLEDVSL-FKDYLVLSY 343 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE-ETTEEEEEE
T ss_pred CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC-CCceeEEEEEE-ECCEEEEEE
Confidence 22333332212334445444 44 33342 2345666678777543 2255555 55433333344 3445544 4
Q ss_pred ECCC--eEEEEECcCCceeEEEEcCCC--eeeeeEcC-CCCEEEEEeC---CCcEEEEECCCCcch
Q 017601 303 GVDY--EVFCGQWRESSKVFAFRGDSN--WLGFSKCS-NRDVLGGWSD---SGSIFVADVVAKENE 360 (369)
Q Consensus 303 s~D~--~i~vwd~~~~~~~~~~~g~~~--~~~~~~~~-d~~~l~sgs~---dg~I~iWd~~~~~~~ 360 (369)
-.++ .|+++|+..+........... ..++.... ...+.++-+. -++++.||+.+++..
T Consensus 344 ~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 344 RENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 4454 689999983344444433221 01111112 2334443332 368899999988753
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.22 E-value=2.7 Score=42.30 Aligned_cols=187 Identities=13% Similarity=0.104 Sum_probs=94.4
Q ss_pred EEEECCCCceeEEEEeccc------ceEEEEeCCcceEE----EEeeeCCcceeeeccCCCCCCCCcEEEEEcCC-----
Q 017601 153 GLCFSPSQWSMAAVARSFS------KSIDVYDQDIHLRT----LRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC----- 217 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d------~~i~lwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~----- 217 (369)
++++.. +.++++| +.| .++..||....... +........+..+. +..++.+|.||
T Consensus 327 ~~~~~~--~~lYv~G-G~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~-------g~iYavGG~dg~~~l~ 396 (571)
T KOG4441|consen 327 GVAVLN--GKLYVVG-GYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD-------GKLYAVGGFDGEKSLN 396 (571)
T ss_pred cEEEEC--CEEEEEc-cccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC-------CEEEEEeccccccccc
Confidence 455554 3567776 666 46777876532221 11111122222322 34455566664
Q ss_pred eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC------cEEEEeCCC--ceeeeeccccccCceEE
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR------TVTIYDPRR--WSALSRWVHCSKYEITG 288 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~------~v~vwD~~~--~~~~~~~~~h~~~~v~~ 288 (369)
++..||.++.+ ...+..+... ....-.+ .-+| ..++||.|+ +|..||..+ |+.+..+..- ......
T Consensus 397 svE~YDp~~~~-W~~va~m~~~-r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~g~ 471 (571)
T KOG4441|consen 397 SVECYDPVTNK-WTPVAPMLTR-RSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGFGV 471 (571)
T ss_pred cEEEecCCCCc-ccccCCCCcc-eeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc-cccceE
Confidence 58889988751 1122212111 1112222 2256 777887554 578899887 4444444432 222222
Q ss_pred EEEcCCCCCEEEEEECCC-----eEEEEECcCCceeEE--EEcCCCeeeeeEcCCCCEEEEEeCCC-----cEEEEECCC
Q 017601 289 LSFSSIDSNYIYVQGVDY-----EVFCGQWRESSKVFA--FRGDSNWLGFSKCSNRDVLGGWSDSG-----SIFVADVVA 356 (369)
Q Consensus 289 l~~sp~d~~~l~s~s~D~-----~i~vwd~~~~~~~~~--~~g~~~~~~~~~~~d~~~l~sgs~dg-----~I~iWd~~~ 356 (369)
..+ ++.+.+.||.|+ +|..+|..+.+-... +.....-.++. ..++...+.|+.|| +|..||..+
T Consensus 472 a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 472 AVL---NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred EEE---CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEecccCccccceeEEcCCCC
Confidence 222 567788888776 367778776543222 11111000111 12677778888886 566777665
Q ss_pred Cc
Q 017601 357 KE 358 (369)
Q Consensus 357 ~~ 358 (369)
.+
T Consensus 548 d~ 549 (571)
T KOG4441|consen 548 DT 549 (571)
T ss_pred Cc
Confidence 53
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.5 Score=44.68 Aligned_cols=117 Identities=14% Similarity=0.070 Sum_probs=74.1
Q ss_pred cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc-------c----------cCCceeeeeeccCCCcEEEEEEC--CCC
Q 017601 193 SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM-------K----------ENGGCLHRICGSVGDILYAVCSS--STG 253 (369)
Q Consensus 193 ~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~-------~----------~~~~~~~~~~~~~~~~v~~v~~s--p~g 253 (369)
..++++....++. ...|++|.+||.|.+|.+++ . ...++...+... ...++++++ ...
T Consensus 101 HtIN~i~v~~lg~-~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~--~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 101 HTINFIKVGDLGG-EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG--ASAWGLDIHDYKKS 177 (717)
T ss_pred ceeeEEEecccCC-eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC--CceeEEEEEecCcc
Confidence 3444444333333 45788899999999997631 0 001122333333 789999998 666
Q ss_pred -cEEEEeCCCcEEEEeCCCc--ee-eeeccccccCceEEEEEcCCC--CC---EEEEEECCCeEEEEEC
Q 017601 254 -NIAVAGADRTVTIYDPRRW--SA-LSRWVHCSKYEITGLSFSSID--SN---YIYVQGVDYEVFCGQW 313 (369)
Q Consensus 254 -~lasgs~D~~v~vwD~~~~--~~-~~~~~~h~~~~v~~l~~sp~d--~~---~l~s~s~D~~i~vwd~ 313 (369)
+||+++....|.||-.... +. ...-..| ...|.+|+|-+.+ +. .+++++-.|++.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~-~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQH-SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEecccccccccccccc-ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888888754431 11 1111124 5678999997732 22 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.9 Score=41.32 Aligned_cols=110 Identities=16% Similarity=0.224 Sum_probs=67.4
Q ss_pred EEEEEECCCC-cEEEE-eCCC----cEEEEeCCCceeeeec-cccccCceEEEEEcCCCCCEEEEEECCC----------
Q 017601 244 LYAVCSSSTG-NIAVA-GADR----TVTIYDPRRWSALSRW-VHCSKYEITGLSFSSIDSNYIYVQGVDY---------- 306 (369)
Q Consensus 244 v~~v~~sp~g-~lasg-s~D~----~v~vwD~~~~~~~~~~-~~h~~~~v~~l~~sp~d~~~l~s~s~D~---------- 306 (369)
+..+++||+| ++|.+ +..| +++++|+++++.+... ... . -..+.|.+ |++.|+-...|.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~--~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-K--FSSVSWSD-DGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-E--SEEEEECT-TSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-c--cceEEEeC-CCCEEEEEEeCcccccccCCCC
Confidence 3457889999 65543 3334 5999999999877632 322 1 23499999 887766655433
Q ss_pred -eEEEEECcCCce--eEEEEc--CCC-eeeeeEcCCCCEEEEEeC-C---CcEEEEECCCC
Q 017601 307 -EVFCGQWRESSK--VFAFRG--DSN-WLGFSKCSNRDVLGGWSD-S---GSIFVADVVAK 357 (369)
Q Consensus 307 -~i~vwd~~~~~~--~~~~~g--~~~-~~~~~~~~d~~~l~sgs~-d---g~I~iWd~~~~ 357 (369)
.|+.|.+.+... ...|.+ +.. +..+....|+++|+..+. . ..+++-++..+
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 378888877432 344543 232 445566778888664333 2 34677787764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.05 E-value=9.6 Score=39.93 Aligned_cols=133 Identities=16% Similarity=0.202 Sum_probs=90.0
Q ss_pred CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC
Q 017601 216 GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI 294 (369)
Q Consensus 216 d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~ 294 (369)
.|.|.+|.+....+.+.++..... +.++++..- +| ++| +-.-+|++|+..+.+.++.-..| ...+..+...-
T Consensus 806 ~GRIivfe~~e~~~L~~v~e~~v~--Gav~aL~~f-ngkllA--~In~~vrLye~t~~~eLr~e~~~-~~~~~aL~l~v- 878 (1096)
T KOG1897|consen 806 NGRIIVFEFEELNSLELVAETVVK--GAVYALVEF-NGKLLA--GINQSVRLYEWTTERELRIECNI-SNPIIALDLQV- 878 (1096)
T ss_pred cceEEEEEEecCCceeeeeeeeec--cceeehhhh-CCeEEE--ecCcEEEEEEccccceehhhhcc-cCCeEEEEEEe-
Confidence 477888887764333344444444 777777432 35 443 34568999999988788877777 78899999988
Q ss_pred CCCEEEEEECCCeEEEEECcCCc--eeEEEE-cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 295 DSNYIYVQGVDYEVFCGQWRESS--KVFAFR-GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 295 d~~~l~s~s~D~~i~vwd~~~~~--~~~~~~-g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
.+..++.|..-+.+.+...+..+ ..-.-+ -+.+|+.-...-+++..+.+-.+|.+++-...
T Consensus 879 ~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 879 KGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred cCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence 89999999888887776665543 222111 25566543333377888888889999887654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.27 Score=45.22 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=44.9
Q ss_pred eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEE-EeCCCcEEEEeCCCceeeeeccc
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAV-AGADRTVTIYDPRRWSALSRWVH 280 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~las-gs~D~~v~vwD~~~~~~~~~~~~ 280 (369)
.|-++|+.++ +.+.++... .++.+|..+.+. +|.+ ...++.+.+||..+++.++++.+
T Consensus 270 eVWv~D~~t~---krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTH---KRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTT---EEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCC---eEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 5777788888 888888876 778899999988 6654 45689999999999999988774
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.41 Score=29.67 Aligned_cols=30 Identities=23% Similarity=0.119 Sum_probs=24.9
Q ss_pred CcEEEEEECCCC----cEEEEeCCCcEEEEeCCC
Q 017601 242 DILYAVCSSSTG----NIAVAGADRTVTIYDPRR 271 (369)
Q Consensus 242 ~~v~~v~~sp~g----~lasgs~D~~v~vwD~~~ 271 (369)
+.|.++.|||+. +|+.+-.-+.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999754 777787888999999995
|
It contains a characteristic DLL sequence motif. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=1.1 Score=44.87 Aligned_cols=101 Identities=9% Similarity=-0.019 Sum_probs=57.2
Q ss_pred eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC------CcEEEEeCCC---ceeeeeccccccCceE
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD------RTVTIYDPRR---WSALSRWVHCSKYEIT 287 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D------~~v~vwD~~~---~~~~~~~~~h~~~~v~ 287 (369)
++..||.++.. ...+..+... .... ++ ..-+| ..+.|+.+ .+|..||+++ |+.+..+... .....
T Consensus 433 ~ve~YDP~td~-W~~v~~m~~~-r~~~-~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~-r~~~~ 507 (557)
T PHA02713 433 KVIRYDTVNNI-WETLPNFWTG-TIRP-GV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR-LSALH 507 (557)
T ss_pred eEEEECCCCCe-EeecCCCCcc-cccC-cE-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc-cccce
Confidence 57788887651 1112222111 1111 12 22246 66667654 2467899885 5666666655 44444
Q ss_pred EEEEcCCCCCEEEEEECCC--eEEEEECcCCceeEEEEcCC
Q 017601 288 GLSFSSIDSNYIYVQGVDY--EVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~--~i~vwd~~~~~~~~~~~g~~ 326 (369)
.+.+ ++.+.+.||.|+ .+-.+|..+.+-...-..|+
T Consensus 508 ~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 508 TILH---DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred eEEE---CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 4444 668899999888 77788887765544444444
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.30 E-value=4.1 Score=41.12 Aligned_cols=98 Identities=17% Similarity=0.252 Sum_probs=62.8
Q ss_pred CcEEEEEc-CCeEEEEeCCcccCCceeee--eeccCCCcEEEEEEC--CCC-cEEEEeCCCcEEEEeCC---------Cc
Q 017601 208 PNMLAVTE-GCQLTIWDLRMKENGGCLHR--ICGSVGDILYAVCSS--STG-NIAVAGADRTVTIYDPR---------RW 272 (369)
Q Consensus 208 ~~lla~s~-d~~v~iwD~~~~~~~~~~~~--~~~~~~~~v~~v~~s--p~g-~lasgs~D~~v~vwD~~---------~~ 272 (369)
+.++.+.. ..++.|||.+.+ ..... +..+ +.|..+.|. |+| .+.+-+-.+.|.+|--. ++
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~---~lE~~~~f~~~--~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w 115 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSG---VLEYEESFSED--DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSW 115 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCc---EEEEeeeecCC--CceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence 35555554 457999999977 33332 3334 889999884 667 66666677788887421 13
Q ss_pred eeeeec--cccccCceEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 273 SALSRW--VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 273 ~~~~~~--~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
.++.++ ..|-..+|.+..|-+ +|.+++.+ ++.+.|+|-
T Consensus 116 ~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 116 APIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred ceeEEEEeecCCCCCccceeEec-CCeEEEEe--CCEEEEECC
Confidence 334332 344125799999999 88776654 467777763
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=1.4 Score=44.44 Aligned_cols=96 Identities=15% Similarity=0.002 Sum_probs=55.8
Q ss_pred CCCCCCCcEEEEE------cCC--eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC-----------
Q 017601 202 SPVNGGPNMLAVT------EGC--QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD----------- 261 (369)
Q Consensus 202 ~~~~~~~~lla~s------~d~--~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D----------- 261 (369)
..++++..++.+. .|. .|.+++.. + .. ..+... .....-.|+|+| .|++.+..
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g---~~-~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-G---VA-VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCC-C---cc-eeeecC--CCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 3456777777665 244 45555542 2 22 223222 347778999998 66665432
Q ss_pred -CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 262 -RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 262 -~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
+.+.+.++..++... .. ...|..+.||| ||..++... ++.|.+
T Consensus 429 ~gql~~~~vd~ge~~~---~~-~g~Issl~wSp-DG~RiA~i~-~g~v~V 472 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RV-PGPISELQLSR-DGVRAAMII-GGKVYL 472 (591)
T ss_pred CceEEEEeccCchhhh---cc-CCCcCeEEECC-CCCEEEEEE-CCEEEE
Confidence 222222333332222 22 56799999999 999988765 577777
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.13 E-value=3.4 Score=36.02 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=62.8
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc---------ceEEEEeee-----CCcceeeeccCCCCCCCCcEEEEEcCCe
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI---------HLRTLRTLW-----YPSSLNFVQNLSPVNGGPNMLAVTEGCQ 218 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~---------~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~lla~s~d~~ 218 (369)
+++|+.+...+..+- +.+-+|.-||.+. .+..++..+ .|..+.. +.+|..++++-..++
T Consensus 162 gl~Wd~d~K~fY~iD-sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I------D~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYID-SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI------DTEGNLYVATFNGGT 234 (310)
T ss_pred cccccccCcEEEEEc-cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE------ccCCcEEEEEecCcE
Confidence 689997554444444 8899999998431 122222111 1122111 124667777778899
Q ss_pred EEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC---cEEEEeC
Q 017601 219 LTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG---NIAVAGA 260 (369)
Q Consensus 219 v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g---~lasgs~ 260 (369)
|.-.|..++ +.+.++..+ ...|+|+||---+ +.+++..
T Consensus 235 V~~~dp~tG---K~L~eiklP-t~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 235 VQKVDPTTG---KILLEIKLP-TPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred EEEECCCCC---cEEEEEEcC-CCceEEEEecCCCccEEEEEehh
Confidence 999999999 889888877 7899999996543 4444443
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.08 E-value=3.2 Score=35.72 Aligned_cols=102 Identities=13% Similarity=0.173 Sum_probs=66.2
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC------CcEEEE-eCCC----ceeee
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD------RTVTIY-DPRR----WSALS 276 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D------~~v~vw-D~~~----~~~~~ 276 (369)
.|+.+...+.|.+||+.+. ......+|..- +.|..+.++..| +|+|--.+ ..+|+| +.|. .+++.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~-~~~~~~~F~Tv--~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQE-ECPLLCTFSTV--GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred eEEEEcCCCEEEEEEcccC-CCceeEEEcch--hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 4545577789999999833 33566677765 889999999999 88885332 256665 2221 12221
Q ss_pred -ecccc--------------------ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 277 -RWVHC--------------------SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 277 -~~~~h--------------------~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
.+.|| +...+.+++..|..|++++. .++.+.+|.+..
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg--~~~~l~lf~l~~ 164 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG--CGNKLVLFTLKY 164 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE--cCCEEEEEEEEE
Confidence 22222 23457789999977777654 467899998764
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=91.94 E-value=1.1 Score=38.97 Aligned_cols=61 Identities=21% Similarity=0.370 Sum_probs=42.1
Q ss_pred CCCcEEEEEcCCeEEEEeCCcccCCceeee-------eec------cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCC
Q 017601 206 GGPNMLAVTEGCQLTIWDLRMKENGGCLHR-------ICG------SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPR 270 (369)
Q Consensus 206 ~~~~lla~s~d~~v~iwD~~~~~~~~~~~~-------~~~------~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~ 270 (369)
.+..+++.+.+|.+++||++++ +++.. +.. .....|..+.++.+| -|++- .+|....||..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~---k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKG---KAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCC---eeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 3678999999999999999987 43322 110 113678888889888 44443 35778888754
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=91.53 E-value=6.1 Score=37.78 Aligned_cols=110 Identities=13% Similarity=0.079 Sum_probs=69.5
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCCCce-------------------------------------------eeeec
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS-------------------------------------------ALSRW 278 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~-------------------------------------------~~~~~ 278 (369)
.|..+.|+++. .|++|...|-|-||-....+ +..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47778888887 88888888888877432210 11112
Q ss_pred cccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc-C------C--CeeeeeE--cC---CC---CEEE
Q 017601 279 VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG-D------S--NWLGFSK--CS---NR---DVLG 341 (369)
Q Consensus 279 ~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g-~------~--~~~~~~~--~~---d~---~~l~ 341 (369)
... +++|++++.| |=.++|.|..+|.+.|.|+|....++.-.- + . ....++. +. |+ -.++
T Consensus 83 ~~~-~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAK-QGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ----S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ecc-CCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 233 5789999997 457999999999999999988776666311 1 0 0012222 11 33 3688
Q ss_pred EEeCCCcEEEEECC
Q 017601 342 GWSDSGSIFVADVV 355 (369)
Q Consensus 342 sgs~dg~I~iWd~~ 355 (369)
.|...|.+.+|.+-
T Consensus 160 vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 160 VGTNSGNVLTFKIL 173 (395)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCCEEEEEEe
Confidence 99999999999874
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.84 Score=42.92 Aligned_cols=91 Identities=18% Similarity=0.057 Sum_probs=55.3
Q ss_pred CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee-ecccc------------
Q 017601 216 GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS-RWVHC------------ 281 (369)
Q Consensus 216 d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h------------ 281 (369)
.+.+.|||+.++ .. ..+... ...+....|||+| .+|-.. ++.|.+++..+++..+ +..|-
T Consensus 22 ~~~y~i~d~~~~---~~-~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 22 KGDYYIYDIETG---EI-TPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEETTTT---EE-EESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHH
T ss_pred ceeEEEEecCCC---ce-EECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceec
Confidence 457999999986 32 222221 2677888999999 666654 6789999987764432 22220
Q ss_pred ---ccCceEEEEEcCCCCCEEEEEECC-CeEEEEEC
Q 017601 282 ---SKYEITGLSFSSIDSNYIYVQGVD-YEVFCGQW 313 (369)
Q Consensus 282 ---~~~~v~~l~~sp~d~~~l~s~s~D-~~i~vwd~ 313 (369)
.-+.-.++-||| |+++||....| ..|+.+.+
T Consensus 96 eEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp HHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEE
T ss_pred cccccccccceEECC-CCCEEEEEEECCcCCceEEe
Confidence 001235688999 99999887654 34554443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.94 Score=28.09 Aligned_cols=32 Identities=13% Similarity=-0.020 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCC--CEEEEEECCCeEEEEECcC
Q 017601 284 YEITGLSFSSIDS--NYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 284 ~~v~~l~~sp~d~--~~l~s~s~D~~i~vwd~~~ 315 (369)
+.|.++.|||..+ .+|+-+-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3588999998344 4677666678999999985
|
It contains a characteristic DLL sequence motif. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.90 E-value=13 Score=34.23 Aligned_cols=81 Identities=12% Similarity=0.004 Sum_probs=52.5
Q ss_pred CcEEEEEECCCC-cEEE-EeCCCcEEEEeCCC--cee-----eeeccccccCceEEEEEcCCCCCEEEEEECCC-eEEEE
Q 017601 242 DILYAVCSSSTG-NIAV-AGADRTVTIYDPRR--WSA-----LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY-EVFCG 311 (369)
Q Consensus 242 ~~v~~v~~sp~g-~las-gs~D~~v~vwD~~~--~~~-----~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~-~i~vw 311 (369)
..-+.||||||+ .|.. =+..+.|.-|++.. +.. ...+... .+..-.++... +|.+.+++-.++ .|.+|
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~-~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEE-PGLPDGMAVDA-DGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCC-CCCCCceEEeC-CCCEEEecccCCceEEEE
Confidence 445789999999 5544 45557888777652 111 1112222 34555666666 788876555554 89999
Q ss_pred ECcCCceeEEEEcC
Q 017601 312 QWRESSKVFAFRGD 325 (369)
Q Consensus 312 d~~~~~~~~~~~g~ 325 (369)
+.. ++++..+.-.
T Consensus 241 ~pd-G~l~~~i~lP 253 (307)
T COG3386 241 NPD-GKLLGEIKLP 253 (307)
T ss_pred CCC-CcEEEEEECC
Confidence 988 8888888765
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=9.1 Score=38.16 Aligned_cols=103 Identities=16% Similarity=0.054 Sum_probs=51.8
Q ss_pred CC-cEEEEeCC------CcEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCCEEEEEECCC--------eEEEEECc
Q 017601 252 TG-NIAVAGAD------RTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY--------EVFCGQWR 314 (369)
Q Consensus 252 ~g-~lasgs~D------~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~--------~i~vwd~~ 314 (369)
++ .++.||.+ +.+..||+.+ +..+..+... ......+. - ++..++.||.+. .+.+||..
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-HYGGCAIY--H-DGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-ccCceEEE--E-CCEEEEECCccCCCCCcccceEEEecCC
Confidence 45 66666632 4688999876 4443333322 11112222 2 456666666432 37888887
Q ss_pred CCceeEEEE-cCCCeeeeeEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 017601 315 ESSKVFAFR-GDSNWLGFSKCSNRDVLGGWSDS-----GSIFVADVVAKE 358 (369)
Q Consensus 315 ~~~~~~~~~-g~~~~~~~~~~~d~~~l~sgs~d-----g~I~iWd~~~~~ 358 (369)
+++-...-. ...++.......++.+++.|+.+ +.|.++|..+.+
T Consensus 465 ~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 465 TNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 653221110 00110100111266776667654 578888887653
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=89.84 E-value=5.8 Score=38.04 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=58.4
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCc-eEEEEEcCCCC----------------CEEE-EE
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYE-ITGLSFSSIDS----------------NYIY-VQ 302 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~-v~~l~~sp~d~----------------~~l~-s~ 302 (369)
-.+.+++.+|.+ +.|+...=|.|.|+|+.++..++.|+|- .+. +.-+....... .+|+ =+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY-RdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY-RDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC-ccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 458899999999 7777777889999999999999999987 543 22121111011 1222 24
Q ss_pred ECCCeEEEEECcCCceeEEEEc
Q 017601 303 GVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~~~~g 324 (369)
-.-|.|-||.++.+..+..|..
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEe
Confidence 5678899999999988888753
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=89.51 E-value=15 Score=32.88 Aligned_cols=123 Identities=12% Similarity=0.045 Sum_probs=72.2
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC--cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAVAGADR--TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~--~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
+.++++.|........+.|..+| ++-+.+.-| .|+.+|+.+++.+....-....---.+..-. .+...-.=.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence 34555665523455667887778 666666655 7999999998876544321011122333333 233333345788
Q ss_pred EEEEECcCCceeEEEEcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 308 VFCGQWRESSKVFAFRGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
..+||.++-+.+..|.-.. .| ++. .|++.|+....+..|+++|.++-+
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGW-GLt--~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGW-GLT--SDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS---EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred EEEEccccceEEEEEecCCcce-EEE--cCCCEEEEECCccceEEECCcccc
Confidence 9999999887777775332 22 343 577788877778899999987654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=89.23 E-value=9.5 Score=39.46 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=50.1
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCce---------e---eeec-------c-ccccCceEEEEEcCC--CCCE
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS---------A---LSRW-------V-HCSKYEITGLSFSSI--DSNY 298 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~---------~---~~~~-------~-~h~~~~v~~l~~sp~--d~~~ 298 (369)
-.|..|.+||+| +||..|..+.+.+.=.+++. . .+++ . .+ ...|..+.|+|. ++.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~-~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNS-SLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCC-CceEEEEEEcCCCCCCCe
Confidence 468888999999 88888876644433223211 1 1111 1 22 457999999994 3578
Q ss_pred EEEEECCCeEEEEECcC
Q 017601 299 IYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 299 l~s~s~D~~i~vwd~~~ 315 (369)
|+.-..|+++|+||+..
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 88889999999999975
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=88.88 E-value=17 Score=32.54 Aligned_cols=144 Identities=14% Similarity=0.030 Sum_probs=80.8
Q ss_pred CCcEEEEEcC--CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccC
Q 017601 207 GPNMLAVTEG--CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKY 284 (369)
Q Consensus 207 ~~~lla~s~d--~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~ 284 (369)
+..+-+.+.- ..|+.+|+.++ +...........---.++...+.....-=.++..-+||..+.+.+.++.-. .
T Consensus 56 g~LyESTG~yG~S~l~~~d~~tg---~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~--~ 130 (264)
T PF05096_consen 56 GTLYESTGLYGQSSLRKVDLETG---KVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP--G 130 (264)
T ss_dssp TEEEEEECSTTEEEEEEEETTTS---SEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-S--S
T ss_pred CEEEEeCCCCCcEEEEEEECCCC---cEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecC--C
Confidence 4444555544 47999999998 655544433111112233333323333456788999999999888877633 4
Q ss_pred ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE-----cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK-----CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~-----~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+=..++ . |+..|+.+....+++++|..+-+....+....+-..+.. +.+|.+.|=.=....|..-|.++|+
T Consensus 131 EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 131 EGWGLT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp S--EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-B
T ss_pred cceEEE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCe
Confidence 456666 3 666776666677899999888666655533210022222 2267777766666677777777775
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=88.84 E-value=18 Score=32.94 Aligned_cols=202 Identities=16% Similarity=0.169 Sum_probs=105.7
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCC-----cceEEEEe----------eeCCcceeeeccCCC--CC----CCC
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQD-----IHLRTLRT----------LWYPSSLNFVQNLSP--VN----GGP 208 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-----~~~~~~~~----------~~~~~~v~~~~~~~~--~~----~~~ 208 (369)
.| +++|+|.+.-. ++. ..-+...+||.. ...+.+.. ...|+.+.|.....| .. ...
T Consensus 25 ~W-Gia~~p~~~~W-Vad-ngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 25 AW-GLSYRPGGPFW-VAN-TGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cc-eeEecCCCCEE-Eec-CCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 46 89999966544 333 456788999985 11111111 113444444432222 01 123
Q ss_pred cEEEEEcCCeEEEEeCCcccCC--ceeeeeeccCCCcEEE-EEECCC--C-cE-EEEeCCCcEEEEeCCCceeeee---c
Q 017601 209 NMLAVTEGCQLTIWDLRMKENG--GCLHRICGSVGDILYA-VCSSST--G-NI-AVAGADRTVTIYDPRRWSALSR---W 278 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~--~~~~~~~~~~~~~v~~-v~~sp~--g-~l-asgs~D~~v~vwD~~~~~~~~~---~ 278 (369)
.++.+++||+|.=|...-.... ..+..+.......||. +++... + +| |+-=..++|.|||-. ..++.. +
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F 180 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSF 180 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCc
Confidence 5888999999999986543210 1112222111244543 565544 3 44 444468899999843 322211 1
Q ss_pred ccc-c--c---C---------ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE--c--CCCeeeeeEcC----
Q 017601 279 VHC-S--K---Y---------EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR--G--DSNWLGFSKCS---- 335 (369)
Q Consensus 279 ~~h-~--~---~---------~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~--g--~~~~~~~~~~~---- 335 (369)
... + . . .|+-..-.+ ++..=+.+.--+.|-++|.. +.+++.+. + ...| ++...|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPW-G~a~APa~FG 257 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPW-GLAIAPESFG 257 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCc-eeeeChhhhC
Confidence 100 0 0 0 111111122 22222233334688888875 45666662 2 2233 343322
Q ss_pred --CCCEEEEEeCCCcEEEEECCCCc
Q 017601 336 --NRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 336 --d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+.+|+.=-.||+|..+|..+++
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCc
Confidence 78889888889999999998876
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=88.74 E-value=3.2 Score=36.15 Aligned_cols=71 Identities=10% Similarity=0.043 Sum_probs=51.5
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeec-------c-------ccccCceEEEEEcCCCCCEEEEEECCC
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRW-------V-------HCSKYEITGLSFSSIDSNYIYVQGVDY 306 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~-------~-------~h~~~~v~~l~~sp~d~~~l~s~s~D~ 306 (369)
.++..+ ..++ +|++-..+|.+++||+.+++.+..- . .. ...|..+.++. +|.-+++-+ ++
T Consensus 13 s~~~~l--~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~-~~~i~~~~lt~-~G~PiV~ls-ng 87 (219)
T PF07569_consen 13 SPVSFL--ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSS-SPNITSCSLTS-NGVPIVTLS-NG 87 (219)
T ss_pred CceEEE--EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCC-CCcEEEEEEcC-CCCEEEEEe-CC
Confidence 444443 3456 8888899999999999997765432 1 23 56789999998 898888776 46
Q ss_pred eEEEEECcCCc
Q 017601 307 EVFCGQWRESS 317 (369)
Q Consensus 307 ~i~vwd~~~~~ 317 (369)
..+.||..-+.
T Consensus 88 ~~y~y~~~L~~ 98 (219)
T PF07569_consen 88 DSYSYSPDLGC 98 (219)
T ss_pred CEEEeccccce
Confidence 78888876543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=88.51 E-value=22 Score=33.53 Aligned_cols=125 Identities=16% Similarity=0.088 Sum_probs=64.5
Q ss_pred eEEEEeCCcccCCc--eeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCC-------ceee-eecccc---ccC
Q 017601 218 QLTIWDLRMKENGG--CLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRR-------WSAL-SRWVHC---SKY 284 (369)
Q Consensus 218 ~v~iwD~~~~~~~~--~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~-------~~~~-~~~~~h---~~~ 284 (369)
.|.+++-..+. ++ ....+... ......++|.++| |.+++.....++.|... .+.+ ..+... ...
T Consensus 48 rI~~l~d~dgd-G~~d~~~vfa~~-l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~ 124 (367)
T TIGR02604 48 RILILEDADGD-GKYDKSNVFAEE-LSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHH 124 (367)
T ss_pred EEEEEEcCCCC-CCcceeEEeecC-CCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccc
Confidence 66666544321 12 12333322 2456889999999 44455554444545432 1122 223221 024
Q ss_pred ceEEEEEcCCCCCEEEEEECC-------------------CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeC
Q 017601 285 EITGLSFSSIDSNYIYVQGVD-------------------YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSD 345 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D-------------------~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~ 345 (369)
....+.|.| ||.+.++.+.- +.|.-+|...++....-.|+.+-.++...++|+++++=..
T Consensus 125 ~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 125 SLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccC
Confidence 578899999 99887765521 3344445544433222234443345555567777765443
Q ss_pred C
Q 017601 346 S 346 (369)
Q Consensus 346 d 346 (369)
+
T Consensus 204 ~ 204 (367)
T TIGR02604 204 D 204 (367)
T ss_pred C
Confidence 3
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=88.34 E-value=24 Score=35.23 Aligned_cols=54 Identities=13% Similarity=-0.029 Sum_probs=33.5
Q ss_pred CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 306 YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.+.-+|+.+++..-.+.......+-.....+.+++.++.||.++.+|.++|+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~ 494 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEE 494 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCE
Confidence 346667777766555443222101101111566888899999999999999975
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=88.20 E-value=18 Score=32.16 Aligned_cols=144 Identities=17% Similarity=0.030 Sum_probs=73.8
Q ss_pred eeEEEECCCCceeEEEEeccc--ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEE-EcCCeEEEEe-CCc
Q 017601 151 WSGLCFSPSQWSMAAVARSFS--KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAV-TEGCQLTIWD-LRM 226 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d--~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~-s~d~~v~iwD-~~~ 226 (369)
+...++++++..+.++. ..+ ..+.++..+.......... .+.. ..++++ +.+.++ ..+...+++. ...
T Consensus 26 ~~s~AvS~dg~~~A~v~-~~~~~~~L~~~~~~~~~~~~~~g~---~l~~---PS~d~~-g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVS-EGDGGRSLYVGPAGGPVRPVLTGG---SLTR---PSWDPD-GWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred ccceEECCCCCeEEEEE-EcCCCCEEEEEcCCCcceeeccCC---cccc---ccccCC-CCEEEEEcCCCceEEEEecCC
Confidence 45789999665444443 233 3455555544333322111 1111 123344 455554 3455556663 333
Q ss_pred ccCCceeeeeeccC-CCcEEEEEECCCC-cEEEEe---CCCcEEEEeCCC---c------eeeeeccccccCceEEEEEc
Q 017601 227 KENGGCLHRICGSV-GDILYAVCSSSTG-NIAVAG---ADRTVTIYDPRR---W------SALSRWVHCSKYEITGLSFS 292 (369)
Q Consensus 227 ~~~~~~~~~~~~~~-~~~v~~v~~sp~g-~lasgs---~D~~v~vwD~~~---~------~~~~~~~~h~~~~v~~l~~s 292 (369)
+. ...+ .+.... ...|.++.+|||| ++|.-. .++.|.|--+.. + .+....... ...+++++|.
T Consensus 98 g~-~~~~-~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~ 174 (253)
T PF10647_consen 98 GT-GEPV-EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVTDVAWS 174 (253)
T ss_pred Cc-ceeE-EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcceeeeec
Confidence 31 1121 122110 1289999999999 665544 456777665432 2 111222232 4679999999
Q ss_pred CCCCCEEEEEECCC
Q 017601 293 SIDSNYIYVQGVDY 306 (369)
Q Consensus 293 p~d~~~l~s~s~D~ 306 (369)
+ ++.+++.+...+
T Consensus 175 ~-~~~L~V~~~~~~ 187 (253)
T PF10647_consen 175 D-DSTLVVLGRSAG 187 (253)
T ss_pred C-CCEEEEEeCCCC
Confidence 9 888776665433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=87.93 E-value=9.6 Score=38.54 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=63.2
Q ss_pred EEEEecccceEEEEeCCcceEEEEe-eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCC------cccCCceeeee
Q 017601 164 AAVARSFSKSIDVYDQDIHLRTLRT-LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLR------MKENGGCLHRI 236 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~------~~~~~~~~~~~ 236 (369)
+|+..+...++.|||.....-.+.. +.....+..+.|... ++++.++++|-.+.|.||--. .+....+++.+
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst-~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTST-PDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeec-CCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 3443366778999998754422221 122334444444332 678999999999999998542 11112334443
Q ss_pred e--ccCCCcEEEEEECCCCcEEEEeCCCcEEEEeC
Q 017601 237 C--GSVGDILYAVCSSSTGNIAVAGADRTVTIYDP 269 (369)
Q Consensus 237 ~--~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~ 269 (369)
. .....+|.+.+|-++|.|++|+ .+.+.|+|-
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 2 2214789999999999555554 346777773
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=87.63 E-value=19 Score=35.82 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=58.3
Q ss_pred eeEEEECCC----CceeEEEEecccceEEEEeCCc----ceEEE--Ee--ee-----CCcceeeeccCCCCCCCCcEEEE
Q 017601 151 WSGLCFSPS----QWSMAAVARSFSKSIDVYDQDI----HLRTL--RT--LW-----YPSSLNFVQNLSPVNGGPNMLAV 213 (369)
Q Consensus 151 ~~~l~~~p~----~~~~~a~~~s~d~~i~lwd~~~----~~~~~--~~--~~-----~~~~v~~~~~~~~~~~~~~lla~ 213 (369)
+.|++|.|- -+.++|+ ..-+.|.+|.+.. ..+.+ ++ .. -+..+. |+| ..-++++
T Consensus 59 V~GlsW~P~~~~~~paLLAV--QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCV---WHP----k~~iL~V 129 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAV--QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCV---WHP----KKAILTV 129 (671)
T ss_pred eeeeeecCcccCCCCceEEE--eccceEEEEEeccCccccccceeeeeeeccCCcccCCCccc---ccC----CCceEEE
Confidence 568999985 3456776 4778999997631 11111 00 00 111112 222 2345554
Q ss_pred E-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEE-eCCCcEEEEeCC
Q 017601 214 T-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVA-GADRTVTIYDPR 270 (369)
Q Consensus 214 s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasg-s~D~~v~vwD~~ 270 (369)
- ....-.+++++... ......++.. +.|.|.||.+|| +|+++ +..=.-++||-.
T Consensus 130 LT~~dvSV~~sV~~d~-srVkaDi~~~--G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 130 LTARDVSVLPSVHCDS-SRVKADIKTS--GLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EecCceeEeeeeeeCC-ceEEEeccCC--ceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 3 33333466776542 1233345555 999999999999 55443 223334688844
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=87.60 E-value=13 Score=29.57 Aligned_cols=107 Identities=9% Similarity=0.087 Sum_probs=66.7
Q ss_pred CCcEEEEEcCCeEEEEeCCccc-----CCceeeeeeccCCCcEEEEE---ECCCC---cEEEEeCCCcEEEEeCCCceee
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKE-----NGGCLHRICGSVGDILYAVC---SSSTG---NIAVAGADRTVTIYDPRRWSAL 275 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~-----~~~~~~~~~~~~~~~v~~v~---~sp~g---~lasgs~D~~v~vwD~~~~~~~ 275 (369)
...|++++..++|.|++..... ....+..+.-. ..|++++ |.|+. .|+.|+ ..++..||+.+..-+
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin--~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~ 86 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN--QEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDL 86 (136)
T ss_pred ceeEEEEecCCEEEEECCCccccccccccCceeEEECC--CceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchh
Confidence 3478888888999999876432 12345566554 7888885 44333 666766 456889999886655
Q ss_pred eeccccccCceEEEEEcCC--CCCEEEEEECCCeEEEEECcCCce
Q 017601 276 SRWVHCSKYEITGLSFSSI--DSNYIYVQGVDYEVFCGQWRESSK 318 (369)
Q Consensus 276 ~~~~~h~~~~v~~l~~sp~--d~~~l~s~s~D~~i~vwd~~~~~~ 318 (369)
..-.- .+.|.++.+-.. ...-|+-.+-...|.-+|....+.
T Consensus 87 Fyke~--~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 87 FYKEV--PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred hhhhC--ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 43222 466777766321 123455555566777777655443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.49 E-value=22 Score=32.18 Aligned_cols=81 Identities=12% Similarity=0.186 Sum_probs=53.2
Q ss_pred eEEEEeCCcccCCceeeeeeccCCCcEEE-EEECCCC-cEEEEe-----CCCcEEEEeCCC-ceeeeeccccccCceEEE
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGDILYA-VCSSSTG-NIAVAG-----ADRTVTIYDPRR-WSALSRWVHCSKYEITGL 289 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~~v~~-v~~sp~g-~lasgs-----~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l 289 (369)
...++|..+. +...++....+...+. =.||||| +|...- .-|.|-|||.+. .+.+.++..| .-.-..+
T Consensus 92 f~~vfD~~~~---~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~-GiGpHev 167 (366)
T COG3490 92 FAMVFDPNGA---QEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTH-GIGPHEV 167 (366)
T ss_pred eEEEECCCCC---cCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccC-CcCccee
Confidence 4667888876 3333322110112222 2699999 554432 246799999986 4667788888 7677889
Q ss_pred EEcCCCCCEEEEEE
Q 017601 290 SFSSIDSNYIYVQG 303 (369)
Q Consensus 290 ~~sp~d~~~l~s~s 303 (369)
.+.+ ||+.++.+.
T Consensus 168 ~lm~-DGrtlvvan 180 (366)
T COG3490 168 TLMA-DGRTLVVAN 180 (366)
T ss_pred EEec-CCcEEEEeC
Confidence 9999 999988754
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=87.49 E-value=21 Score=36.96 Aligned_cols=109 Identities=10% Similarity=0.138 Sum_probs=64.7
Q ss_pred CcEEEEEECCCC-cEEEEe-----CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC------CeEE
Q 017601 242 DILYAVCSSSTG-NIAVAG-----ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD------YEVF 309 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs-----~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D------~~i~ 309 (369)
-.+..+.+||+| +|+.+. +.-.|++.|+.++..+...... .. ..++|++ |++.|+-...| ..|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEee-CCCEEEEEEecCCCCCCCEEE
Confidence 446677899999 665542 2336889999888654332222 11 5699999 88766555432 3678
Q ss_pred EEECcCC--ceeEEEEc--CCCeeeeeEcCCCCEEEEEeC---CCcEEEEEC
Q 017601 310 CGQWRES--SKVFAFRG--DSNWLGFSKCSNRDVLGGWSD---SGSIFVADV 354 (369)
Q Consensus 310 vwd~~~~--~~~~~~~g--~~~~~~~~~~~d~~~l~sgs~---dg~I~iWd~ 354 (369)
.+++.++ +....|.. ...+.......|+.+++..+. ++.+.+|+.
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8888876 44444543 222222233447776554333 357888885
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=87.43 E-value=12 Score=39.02 Aligned_cols=107 Identities=12% Similarity=-0.008 Sum_probs=64.1
Q ss_pred CcEEEEeCCCcEEEEeCCCceeeeeccccccC-------ceEEEEEcC---------------CCCCEEEEEECCCeEEE
Q 017601 253 GNIAVAGADRTVTIYDPRRWSALSRWVHCSKY-------EITGLSFSS---------------IDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 253 g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~-------~v~~l~~sp---------------~d~~~l~s~s~D~~i~v 310 (369)
+.++.++.++.|.-.|.++++.+-++...... .+..+++-. ..+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 36666677777777788877766554422000 122233311 13357888889999999
Q ss_pred EECcCCceeEEEEcCCC--ee-----------eeeEcC--CCCEEEEEeC----------CCcEEEEECCCCcc
Q 017601 311 GQWRESSKVFAFRGDSN--WL-----------GFSKCS--NRDVLGGWSD----------SGSIFVADVVAKEN 359 (369)
Q Consensus 311 wd~~~~~~~~~~~g~~~--~~-----------~~~~~~--d~~~l~sgs~----------dg~I~iWd~~~~~~ 359 (369)
.|.++++..-.|..+.. |. .+...+ .+..++.|+. +|.|+-+|+++|+.
T Consensus 275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 99999988877642210 10 112223 3344444532 68899999999974
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.37 E-value=43 Score=35.45 Aligned_cols=132 Identities=11% Similarity=-0.023 Sum_probs=75.8
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC-
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI- 294 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~- 294 (369)
..|+++|-. ..+..+... ..++..+.+.+. .++.++.++.+-..++..+........-...+|.|+.++|.
T Consensus 470 ~~iRl~ss~-----~~~~~W~~p--~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~ 542 (1096)
T KOG1897|consen 470 NSIRLVSSA-----GLRSEWRPP--GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLG 542 (1096)
T ss_pred ccEEEEcch-----hhhhcccCC--CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCC
Confidence 358888755 233444444 455555555566 77777777777777766554222211112468999999984
Q ss_pred -CCC---EEEEEECCCeEEEEECcCC-ceeEEE--EcCCCeeeeeEcC---CCCEEEEEeCCCcEEEEECC
Q 017601 295 -DSN---YIYVQGVDYEVFCGQWRES-SKVFAF--RGDSNWLGFSKCS---NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 295 -d~~---~l~s~s~D~~i~vwd~~~~-~~~~~~--~g~~~~~~~~~~~---d~~~l~sgs~dg~I~iWd~~ 355 (369)
+.+ +++.|.++..+.+--.-.. ..+... .+..--.++..+. |..+|.++..||.+..+-+.
T Consensus 543 d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 543 DAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred CCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 333 7888888877665544332 222222 2221001111111 57899999999999766443
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=87.36 E-value=12 Score=33.29 Aligned_cols=101 Identities=20% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCCCcEEEEE--c-CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEE-eCCCceee--e-
Q 017601 205 NGGPNMLAVT--E-GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIY-DPRRWSAL--S- 276 (369)
Q Consensus 205 ~~~~~lla~s--~-d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vw-D~~~~~~~--~- 276 (369)
++++.++++. + ...+.++.. + ........ ...+..-.|++++ ..+....+...+++ +...++.. .
T Consensus 33 ~dg~~~A~v~~~~~~~~L~~~~~--~---~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v 105 (253)
T PF10647_consen 33 PDGSRVAAVSEGDGGRSLYVGPA--G---GPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEV 105 (253)
T ss_pred CCCCeEEEEEEcCCCCEEEEEcC--C---Ccceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEe
Confidence 4566676666 2 234555543 3 22222222 3567778999999 54555555556666 33333222 1
Q ss_pred eccccccCceEEEEEcCCCCCEEEEEE---CCCeEEEEECc
Q 017601 277 RWVHCSKYEITGLSFSSIDSNYIYVQG---VDYEVFCGQWR 314 (369)
Q Consensus 277 ~~~~h~~~~v~~l~~sp~d~~~l~s~s---~D~~i~vwd~~ 314 (369)
.+..- ...|+++.+|| ||..++... .++.|.+--+.
T Consensus 106 ~~~~~-~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 106 DWPGL-RGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ccccc-CCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEE
Confidence 12211 22899999999 999988766 35677777654
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=87.29 E-value=14 Score=37.93 Aligned_cols=175 Identities=18% Similarity=0.226 Sum_probs=87.5
Q ss_pred eEEEEEEeCCeEEEEEEeCCchhhhcCC---CccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCC
Q 017601 42 SCFVYIASGCHLYKLQVMMDDWFVSEGK---DSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYG 118 (369)
Q Consensus 42 ~~~~~~as~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g 118 (369)
.+++++|.+..|+.....-.... ...+ .....|........ ...-.+-...|+-|....=+ +..+|+.+.++|
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~-p~~~p~~~~~t~p~~~~~~D~-~~s~~p~PHtIN~i~v~~lg--~~EVLl~c~DdG 124 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQL-PSRKPCLRFDTKPEFTSTPDR-LISTWPFPHTINFIKVGDLG--GEEVLLLCTDDG 124 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccc-cccccccccccCccccccccc-cccCCCCCceeeEEEecccC--CeeEEEEEecCC
Confidence 66889999998877763221111 1000 00112211111111 11111233457777654432 346888888899
Q ss_pred cEEEEEecCCC-------CCCccc--cccccCCC-CCCCCCCeeEEEEC--CCCceeEEEEecccceEEEEeCCc-----
Q 017601 119 HLIVSKLDTSG-------KDVDRL--TYSVLPQD-CGVGEGSWSGLCFS--PSQWSMAAVARSFSKSIDVYDQDI----- 181 (369)
Q Consensus 119 ~v~~~~~~~~~-------~~~~~~--~~~~~~~~-~~~~~~~~~~l~~~--p~~~~~~a~~~s~d~~i~lwd~~~----- 181 (369)
.|.+|.+..-. .+.+.. ...+.|.- ..++...| ||+++ . ...+||++ +....|.||-...
T Consensus 125 ~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaW-GLdIh~~~-~~rlIAVS-sNs~~VTVFaf~l~~~r~ 201 (717)
T PF08728_consen 125 DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAW-GLDIHDYK-KSRLIAVS-SNSQEVTVFAFALVDERF 201 (717)
T ss_pred eEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCcee-EEEEEecC-cceEEEEe-cCCceEEEEEEecccccc
Confidence 99999764210 011100 01122211 12233346 89998 4 45677777 7888888884321
Q ss_pred -ceEEEEeeeCCcceeeeccCCCCCCCC-cEEEEEcCCeEEEEeC
Q 017601 182 -HLRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDL 224 (369)
Q Consensus 182 -~~~~~~~~~~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~iwD~ 224 (369)
...........-+|.|+.... ++.|. .+++++-.|.+.+|++
T Consensus 202 ~~~~s~~~~hNIP~VSFl~~~~-d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 202 YHVPSHQHSHNIPNVSFLDDDL-DPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccCCCeeEeecCCC-CCccceEEEEEeccCcEEEEEE
Confidence 111111222345677776432 12222 5556777899988887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.20 E-value=27 Score=34.36 Aligned_cols=138 Identities=9% Similarity=-0.083 Sum_probs=65.7
Q ss_pred cEEEEEcC--CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC---cEEEEeCCC--ceeeeeccc
Q 017601 209 NMLAVTEG--CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR---TVTIYDPRR--WSALSRWVH 280 (369)
Q Consensus 209 ~lla~s~d--~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~---~v~vwD~~~--~~~~~~~~~ 280 (369)
.++.+|.+ ..+..||..++. ...+..+... ......+ .-+| ..+.||.++ ++..||.++ |+....+..
T Consensus 321 iYviGG~~~~~sve~ydp~~n~-W~~~~~l~~~-r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 321 LYVVGGLPNPTSVERWFHGDAA-WVNMPSLLKP-RCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred EEEECCcCCCCceEEEECCCCe-EEECCCCCCC-CcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 33444432 468889876541 1111222211 1111122 2356 667777553 577899876 443333332
Q ss_pred cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE--EEcCCCeeeeeEcCCCCEEEEEeCC-----CcEEEEE
Q 017601 281 CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA--FRGDSNWLGFSKCSNRDVLGGWSDS-----GSIFVAD 353 (369)
Q Consensus 281 h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~--~~g~~~~~~~~~~~d~~~l~sgs~d-----g~I~iWd 353 (369)
. ......+.+ ++.+.+.|+ .+-++|.++++-... +.......+.. ..++.+.+.|+.+ ..|..||
T Consensus 397 ~-r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 397 P-HYKSCALVF---GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred c-cccceEEEE---CCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEE
Confidence 2 222222222 455656553 467788776433211 11101001111 2267777777754 4677888
Q ss_pred CCCCc
Q 017601 354 VVAKE 358 (369)
Q Consensus 354 ~~~~~ 358 (369)
.++.+
T Consensus 469 ~~~~~ 473 (480)
T PHA02790 469 NRTYS 473 (480)
T ss_pred CCCCe
Confidence 87654
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=86.73 E-value=4.2 Score=33.91 Aligned_cols=31 Identities=6% Similarity=-0.057 Sum_probs=24.1
Q ss_pred ceEEEEEcCC----C-CCEEEEEECCCeEEEEECcC
Q 017601 285 EITGLSFSSI----D-SNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 285 ~v~~l~~sp~----d-~~~l~s~s~D~~i~vwd~~~ 315 (369)
.|.+++|||. + +.+|+....++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 6889999993 2 34577788899999998653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=86.65 E-value=11 Score=37.64 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=63.8
Q ss_pred CCcEEEEeCCCcEEEEeCCCceeeeeccccccCceE----------EEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 252 TGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT----------GLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 252 ~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~----------~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
++.++.++.++.|.-+|.++++.+-++.......+. .+++ .+..++.++.|+.+...|.++++.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 446777777888888899988876554421011111 1222 235677788899999999999888765
Q ss_pred EEc--CCCeeeeeEcC---CCCEEEEEe-----CCCcEEEEECCCCcc
Q 017601 322 FRG--DSNWLGFSKCS---NRDVLGGWS-----DSGSIFVADVVAKEN 359 (369)
Q Consensus 322 ~~g--~~~~~~~~~~~---d~~~l~sgs-----~dg~I~iWd~~~~~~ 359 (369)
+.. +.....+...| ++.+++..+ .+|.|+.+|.++|+.
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 532 11001222233 454444322 268999999998874
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.39 E-value=18 Score=35.31 Aligned_cols=101 Identities=11% Similarity=0.114 Sum_probs=62.9
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeecc-C--CCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeee-eccccc
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS-V--GDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALS-RWVHCS 282 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~-~--~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~-~~~~h~ 282 (369)
.+.|+-.| +..|.=-|.|-.. ..+...... + ....+|..-...|++|.||..|-|++|| |-+.... .+.+-
T Consensus 528 eqtlvGlS-~~svFrIDPR~~g--NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyD-Rig~rAKtalP~l- 602 (776)
T COG5167 528 EQTLVGLS-DYSVFRIDPRARG--NKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYD-RIGKRAKTALPGL- 602 (776)
T ss_pred cceEEeec-ccceEEecccccC--CceeeeeehhccccccccccccccCceEEEecCCCceeeeh-hhcchhhhcCccc-
Confidence 44555544 4455556777542 222221111 0 2444555545556999999999999999 4444444 34454
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
...|-.+..+. +|.++++.+. .++.+-|++
T Consensus 603 G~aIk~idvta-~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 603 GDAIKHIDVTA-NGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccceeeeEeec-CCcEEEEeec-ceEEEEecc
Confidence 78899999999 9998777653 567777764
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=85.15 E-value=53 Score=34.43 Aligned_cols=147 Identities=12% Similarity=0.169 Sum_probs=83.4
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE-------------EEEEECC---CCcEEEEeC----------
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL-------------YAVCSSS---TGNIAVAGA---------- 260 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v-------------~~v~~sp---~g~lasgs~---------- 260 (369)
+.+++..+.|+.+.-.|.+++ +.+-.+... +.| +.+.-+| ++.+++|+.
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TG---k~~W~fg~~--G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~ 334 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTG---KLCEDFGNN--GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEP 334 (764)
T ss_pred CCEEEEecCCCeEEEEECCCC---CEEEEecCC--CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCC
Confidence 357777778888888898888 555443321 111 1111122 345666643
Q ss_pred CCcEEEEeCCCceeeeeccc-c--c-----cC--------ce-EEEEEcCCCCCEEEEE------------------ECC
Q 017601 261 DRTVTIYDPRRWSALSRWVH-C--S-----KY--------EI-TGLSFSSIDSNYIYVQ------------------GVD 305 (369)
Q Consensus 261 D~~v~vwD~~~~~~~~~~~~-h--~-----~~--------~v-~~l~~sp~d~~~l~s~------------------s~D 305 (369)
+|.|+-+|+++|+.+-.+.. . . .+ .+ ...++.| ...+++.. -..
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~ 413 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYS 413 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCccccc
Confidence 68899999999887655431 0 0 00 01 1233444 22222221 123
Q ss_pred CeEEEEECcCCceeEEEEc--CCCee------ee-eEcC--CCC---EEEEEeCCCcEEEEECCCCcc
Q 017601 306 YEVFCGQWRESSKVFAFRG--DSNWL------GF-SKCS--NRD---VLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g--~~~~~------~~-~~~~--d~~---~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.|.-.|.++++..=.|+- |..|. .+ .... +|+ .++.++.+|.+++.|.++|+.
T Consensus 414 ~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 414 SSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred ceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 4566678888877666643 33332 11 1111 453 799999999999999999974
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=84.74 E-value=33 Score=35.61 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=30.4
Q ss_pred cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 193 SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 193 ~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
..+.-+.|+|.+..+..|+.-+.|+++|+||+....
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 456778888988888899999999999999997553
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.07 E-value=22 Score=34.24 Aligned_cols=143 Identities=13% Similarity=-0.002 Sum_probs=80.0
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceee----eeccccc
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL----SRWVHCS 282 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~----~~~~~h~ 282 (369)
+..+-+...|.+.=|-++......++ .+.....++|.++.||+|. .||+--.|.+|.+++....+.. .+.+..
T Consensus 34 NkqlfavrSggatgvvvkgpndDVpi-Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k- 111 (657)
T KOG2377|consen 34 NKQLFAVRSGGATGVVVKGPNDDVPI-SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK- 111 (657)
T ss_pred cceEEEEecCCeeEEEEeCCCCCCCc-eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC-
Confidence 44444444455666766544222222 2332225799999999999 9999999999999987432222 233333
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcC----CceeEEEEcCCCeeeeeEcCCCCE--EEEEeCCCcEEEEECCC
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE----SSKVFAFRGDSNWLGFSKCSNRDV--LGGWSDSGSIFVADVVA 356 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~----~~~~~~~~g~~~~~~~~~~~d~~~--l~sgs~dg~I~iWd~~~ 356 (369)
...|.+..|+. + .-+|-.+. .-+-+|.... -+.+.+.....+| ...|++... |+++-..+++.=+.+++
T Consensus 112 ~~~IlGF~W~~-s-~e~A~i~~-~G~e~y~v~pekrslRlVks~~~nvnW--y~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 112 NANILGFCWTS-S-TEIAFITD-QGIEFYQVLPEKRSLRLVKSHNLNVNW--YMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred cceeEEEEEec-C-eeEEEEec-CCeEEEEEchhhhhhhhhhhcccCccE--EEEccccceEeeeccccccccccEEEee
Confidence 34588999987 4 44554443 3355555433 2334444444444 234665443 33333555555555544
Q ss_pred C
Q 017601 357 K 357 (369)
Q Consensus 357 ~ 357 (369)
+
T Consensus 187 ~ 187 (657)
T KOG2377|consen 187 G 187 (657)
T ss_pred c
Confidence 3
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=83.98 E-value=37 Score=31.76 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=49.9
Q ss_pred CCCCcEEEEE-cCC--eEEEEeCCcccCCceeeeeeccCCCcEEE-EEECCCC--cEEEEeCCC----cEEEEeCCCcee
Q 017601 205 NGGPNMLAVT-EGC--QLTIWDLRMKENGGCLHRICGSVGDILYA-VCSSSTG--NIAVAGADR----TVTIYDPRRWSA 274 (369)
Q Consensus 205 ~~~~~lla~s-~d~--~v~iwD~~~~~~~~~~~~~~~~~~~~v~~-v~~sp~g--~lasgs~D~----~v~vwD~~~~~~ 274 (369)
+++..++-.+ .|| .|.++|...+ . ...+... .-.|.. +.|++++ .+.+|..+. .+..-++..+..
T Consensus 245 ~~~~~~l~~s~~~G~~hly~~~~~~~---~-~~~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~ 319 (353)
T PF00930_consen 245 PDGNEFLWISERDGYRHLYLYDLDGG---K-PRQLTSG-DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE 319 (353)
T ss_dssp TTSSEEEEEEETTSSEEEEEEETTSS---E-EEESS-S-SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE
T ss_pred CCCCEEEEEEEcCCCcEEEEEccccc---c-eeccccC-ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 3455666554 466 4555666554 2 3344422 366755 6788887 555666533 455556662334
Q ss_pred eeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 275 LSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 275 ~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
+..+... ...-..+.||| ++++++-.
T Consensus 320 ~~~LT~~-~~~~~~~~~Sp-dg~y~v~~ 345 (353)
T PF00930_consen 320 PKCLTCE-DGDHYSASFSP-DGKYYVDT 345 (353)
T ss_dssp EEESSTT-SSTTEEEEE-T-TSSEEEEE
T ss_pred eEeccCC-CCCceEEEECC-CCCEEEEE
Confidence 4444433 22226999999 98887653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=83.78 E-value=18 Score=34.29 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=49.9
Q ss_pred EECCCC--cEEEEeCCCc--EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 248 CSSSTG--NIAVAGADRT--VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 248 ~~sp~g--~lasgs~D~~--v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
+|.++| +|..+..|+. +.+.|+.+++..+--.+. .........+| +.+.++=......++-.|+++.+....+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~-g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP-GDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC-CCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 688999 4555555664 556688887665533332 23344566778 67777656566788999999987777777
Q ss_pred cCCCeeee-eE--cCCCCEEEE
Q 017601 324 GDSNWLGF-SK--CSNRDVLGG 342 (369)
Q Consensus 324 g~~~~~~~-~~--~~d~~~l~s 342 (369)
-...|.+. .. ..|+..++.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVG 141 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEE
T ss_pred CCcccccccceeeCCCccEEEE
Confidence 67766642 11 335665544
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=83.49 E-value=31 Score=31.68 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=63.0
Q ss_pred CCcEEEEEcCCe-EEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEe-CCCceee----eeccc
Q 017601 207 GPNMLAVTEGCQ-LTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYD-PRRWSAL----SRWVH 280 (369)
Q Consensus 207 ~~~lla~s~d~~-v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD-~~~~~~~----~~~~~ 280 (369)
++.+++++..|. +.-||--... -..+.... ...|.++.|+|++.|-.....|.|+.=| ....+.- .....
T Consensus 155 dG~~vavs~~G~~~~s~~~G~~~--w~~~~r~~--~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 155 DGRYVAVSSRGNFYSSWDPGQTT--WQPHNRNS--SRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp TS-EEEEETTSSEEEEE-TT-SS---EEEE--S--SS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred CCcEEEEECcccEEEEecCCCcc--ceEEccCc--cceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCccc
Confidence 456777776655 4578754320 11222222 4889999999999333344788888776 2222221 11222
Q ss_pred cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc----CCCeeeeeEcCCCCEEEEEeCCCcEEEE
Q 017601 281 CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG----DSNWLGFSKCSNRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 281 h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g----~~~~~~~~~~~d~~~l~sgs~dg~I~iW 352 (369)
- ...+..++|.+ +....++++ .+.+.+ ....++-=..-+. ..+...+... +.+.-+.-+++|.|--|
T Consensus 231 ~-~~~~ld~a~~~-~~~~wa~gg-~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~-~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 231 N-GYGILDLAYRP-PNEIWAVGG-SGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFV-NPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ---S-EEEEEESS-SS-EEEEES-TT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEE-ETTEEEEE-STTEEEEE
T ss_pred C-ceeeEEEEecC-CCCEEEEeC-CccEEE-eCCCCccceECccccCCCCceEEEEEc-CCCceEEECCCcEEEEe
Confidence 2 34589999999 777777665 444433 3333322222211 1111222222 23455555677777655
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.35 E-value=2.4 Score=43.71 Aligned_cols=140 Identities=11% Similarity=-0.043 Sum_probs=79.3
Q ss_pred CeEEEEeCCcccCCce----eeeeeccCCCcEEEEEECC---CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEE
Q 017601 217 CQLTIWDLRMKENGGC----LHRICGSVGDILYAVCSSS---TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITG 288 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~----~~~~~~~~~~~v~~v~~sp---~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~ 288 (369)
|.+.+||+..- .++. +-+....++..+.-|.|.| +. ++-.+-.+++|++....+... .-+.+| ...++.
T Consensus 153 g~lfVy~vd~l-~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsH-s~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVL-QGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSH-SQRVTD 229 (1283)
T ss_pred hhhheeehHhh-ccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhc-CCCccc
Confidence 67889998631 1121 1122222244555555654 34 666777888999877655322 344456 444433
Q ss_pred E-----------EEcCCCCCEEEEEECCCeEEEEECc-----CCceeEEEEcCCCe-eeeeEcC--------CCC--EEE
Q 017601 289 L-----------SFSSIDSNYIYVQGVDYEVFCGQWR-----ESSKVFAFRGDSNW-LGFSKCS--------NRD--VLG 341 (369)
Q Consensus 289 l-----------~~sp~d~~~l~s~s~D~~i~vwd~~-----~~~~~~~~~g~~~~-~~~~~~~--------d~~--~l~ 341 (369)
+ ..|| ||..++.++.||.+++|.+. ..+|++..+.|..- .....|. -+. +++
T Consensus 230 ~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred HHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEE
Confidence 2 3689 99999999999999998764 23455555544310 0000021 121 344
Q ss_pred EEe-CCCcEEEEECCCCcch
Q 017601 342 GWS-DSGSIFVADVVAKENE 360 (369)
Q Consensus 342 sgs-~dg~I~iWd~~~~~~~ 360 (369)
+++ ....+++|....-++.
T Consensus 309 tttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecccCCcceeEeeccchhhh
Confidence 444 4578899987655544
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=81.07 E-value=55 Score=31.59 Aligned_cols=145 Identities=14% Similarity=0.027 Sum_probs=82.4
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCC--ceeeeeeccCCCcEEEEEEC---CC-C--cEEEEeCCCcEEEEeCCC--ce---
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENG--GCLHRICGSVGDILYAVCSS---ST-G--NIAVAGADRTVTIYDPRR--WS--- 273 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~--~~~~~~~~~~~~~v~~v~~s---p~-g--~lasgs~D~~v~vwD~~~--~~--- 273 (369)
...++.+|..|.++||+....+.. ..+-..+. +.+|..+..- +. . .||+ =.-+.+.||.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l--~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL--KDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEec--CCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 357888999999999998654211 12223333 3788888643 22 2 5555 3456777887632 11
Q ss_pred ----eeeecccc-ccCceEEEEEcCC---C-CCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEe
Q 017601 274 ----ALSRWVHC-SKYEITGLSFSSI---D-SNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWS 344 (369)
Q Consensus 274 ----~~~~~~~h-~~~~v~~l~~sp~---d-~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs 344 (369)
.+..+..| +.....++..-|. . ..++..-|.||.+.+++-+.-...+.+.+----.++..++.-+.+++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEec
Confidence 12222233 1222333333231 2 3678889999999999976533222232211002445566667788888
Q ss_pred CCCcEEEEEC
Q 017601 345 DSGSIFVADV 354 (369)
Q Consensus 345 ~dg~I~iWd~ 354 (369)
.+..+.-|..
T Consensus 194 ss~~l~~Yky 203 (418)
T PF14727_consen 194 SSWTLECYKY 203 (418)
T ss_pred CceeEEEecH
Confidence 8888877764
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.72 E-value=24 Score=35.10 Aligned_cols=130 Identities=10% Similarity=0.031 Sum_probs=61.6
Q ss_pred eEEEEeCCcccCCceee--eeeccCCCcEEEEEECCCC-cEEEEeCC-----CcEEEEeCCCc--eeeeeccccccCceE
Q 017601 218 QLTIWDLRMKENGGCLH--RICGSVGDILYAVCSSSTG-NIAVAGAD-----RTVTIYDPRRW--SALSRWVHCSKYEIT 287 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~--~~~~~~~~~v~~v~~sp~g-~lasgs~D-----~~v~vwD~~~~--~~~~~~~~h~~~~v~ 287 (369)
.+..||..+. +... .+... .....++. -++ .++.||.+ .++..||..+. +....+... .....
T Consensus 312 ~v~~yd~~~~---~W~~~~~~~~~-R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-r~~~~ 384 (534)
T PHA03098 312 SVVSYDTKTK---SWNKVPELIYP-RKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-RYNPC 384 (534)
T ss_pred cEEEEeCCCC---eeeECCCCCcc-cccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-Cccce
Confidence 5778888765 3221 11111 11222222 256 67777765 35778888763 333333322 11112
Q ss_pred EEEEcCCCCCEEEEEECC------CeEEEEECcCCceeEE--EEcCCCeeeeeEcCCCCEEEEEeCCC--------cEEE
Q 017601 288 GLSFSSIDSNYIYVQGVD------YEVFCGQWRESSKVFA--FRGDSNWLGFSKCSNRDVLGGWSDSG--------SIFV 351 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D------~~i~vwd~~~~~~~~~--~~g~~~~~~~~~~~d~~~l~sgs~dg--------~I~i 351 (369)
.+. - ++.+.+.||.+ +.+..||..+.+-... +.... ........++.+.+.|+.++ .+.+
T Consensus 385 ~~~--~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 385 VVN--V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-YGGCAIYHDGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred EEE--E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-cCceEEEECCEEEEECCccCCCCCcccceEEE
Confidence 222 2 56777777742 4578888876432211 10000 00001112556666665432 3788
Q ss_pred EECCCCc
Q 017601 352 ADVVAKE 358 (369)
Q Consensus 352 Wd~~~~~ 358 (369)
||.++.+
T Consensus 461 yd~~~~~ 467 (534)
T PHA03098 461 YNPVTNK 467 (534)
T ss_pred ecCCCCc
Confidence 8887653
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=80.06 E-value=55 Score=31.04 Aligned_cols=195 Identities=18% Similarity=0.230 Sum_probs=102.4
Q ss_pred EEECCCCc--eeEEEEecccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCc--EEEEEc--C--CeEEEEeC
Q 017601 154 LCFSPSQW--SMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPN--MLAVTE--G--CQLTIWDL 224 (369)
Q Consensus 154 l~~~p~~~--~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--lla~s~--d--~~v~iwD~ 224 (369)
+-.+|.++ .+++.+ ...+-+.+||+. +.++.+. ...+..+......+.+ +.. |+++++ + .+|++|-+
T Consensus 59 IWvnp~dp~kSlIigT-dK~~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l~--g~~vDlavas~R~~g~n~l~~f~i 134 (381)
T PF02333_consen 59 IWVNPADPAKSLIIGT-DKKGGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPLN--GKTVDLAVASDRSDGRNSLRLFRI 134 (381)
T ss_dssp EE--SS-GGG-EEEEE-ETTTEEEEEETTS-EEEEE--SS-EEEEEEEEEEEET--TEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred EecCCCCcccceEEEE-eCCCCEEEEcCCCcEEEeec-CCCcceeeeecceecC--CceEEEEEEecCcCCCCeEEEEEe
Confidence 33444333 344444 567789999986 4444332 1222233222211111 222 445554 2 57999976
Q ss_pred CcccCCceeeeeecc------CCCcEEEEEE--CC-CC--cEEEEeCCCcEEEEeCC---Cc----eeeeeccccccCce
Q 017601 225 RMKENGGCLHRICGS------VGDILYAVCS--SS-TG--NIAVAGADRTVTIYDPR---RW----SALSRWVHCSKYEI 286 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~------~~~~v~~v~~--sp-~g--~lasgs~D~~v~vwD~~---~~----~~~~~~~~h~~~~v 286 (369)
... + ..+..+... ....++.+|+ +| +| +.+....+|.+.-|-+. ++ +.+++|..- .++
T Consensus 135 d~~-~-g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~--sQ~ 210 (381)
T PF02333_consen 135 DPD-T-GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG--SQP 210 (381)
T ss_dssp ETT-T-TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S--S-E
T ss_pred cCC-C-CcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC--Ccc
Confidence 521 1 233333211 0245788887 44 45 66778889988777653 33 456677643 578
Q ss_pred EEEEEcCCCCCEEEEEECCCeEEEEECcCC-----ceeEEEEcCC---CeeeeeE--cCC--CCEEEEEeCCCcEEEEEC
Q 017601 287 TGLSFSSIDSNYIYVQGVDYEVFCGQWRES-----SKVFAFRGDS---NWLGFSK--CSN--RDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 287 ~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~-----~~~~~~~g~~---~~~~~~~--~~d--~~~l~sgs~dg~I~iWd~ 354 (369)
-.|.... ....|+.+=.|.-|.-++.+.. ..+....+.. ..-++.- ..+ |-+|+|.=.+++..||+.
T Consensus 211 EGCVVDD-e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 211 EGCVVDD-ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEEEET-TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred eEEEEec-ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 8899888 7778888989988888888741 2222222221 1122222 233 335555556789999998
Q ss_pred CCC
Q 017601 355 VAK 357 (369)
Q Consensus 355 ~~~ 357 (369)
+..
T Consensus 290 ~~~ 292 (381)
T PF02333_consen 290 EGP 292 (381)
T ss_dssp STT
T ss_pred CCC
Confidence 753
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-06
Identities = 57/407 (14%), Positives = 114/407 (28%), Gaps = 111/407 (27%)
Query: 3 VLEAKSLRKAEVPLSLIENP----SPGNIQCTRLALHVNEDGCSCFV--YIASGCHLYKL 56
+ +V ++ + N L + + + + H +
Sbjct: 165 WVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 57 QVMMDDW-------FVSEG-KDSLLIPEQTPVMDSSMLN----RCP------HRSEVQSI 98
++ + S+ ++ LL+ V ++ N C + +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 99 ALAETD--SSGYMVLGSVDSYGHLIVSK-LDTSGKDVDRLTYSVLPQDCG-VGEGSWSGL 154
+ A T S + + ++ K LD +D+ R + P+ + E GL
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 155 CFSPSQWSMA---AVARSFSKSIDV---------Y--------DQDIHLRTLRTLWYPSS 194
+ W + S++V + I L +W+
Sbjct: 342 A-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 195 -------LNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMK-ENGGCLHRICGSVGDILY 245
+N + S V P ++ L +L++K EN LHR
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL---ELKVKLENEYALHR---------- 447
Query: 246 AVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD 305
V Y+ + ++ L +D Y Y +
Sbjct: 448 ----------------SIVDHYNIPK-----------TFDSDDLIPPYLD-QYFY-SHIG 478
Query: 306 YEVFCGQWRESSKVFAFRG---DSNWLGFSKCSNRDVLGGWSDSGSI 349
+ + ++ FR D +L K R W+ SGSI
Sbjct: 479 HHLK--NIEHPERMTLFRMVFLDFRFLE-QKI--RHDSTAWNASGSI 520
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 4e-06
Identities = 55/381 (14%), Positives = 107/381 (28%), Gaps = 122/381 (32%)
Query: 7 KSLRKAEVPLSLIE-NPSPGNIQCTRLALHVNEDGC--SCFVYIASGCHLYKLQVMMDD- 62
LR+A L+E P+ + + G + C YK+Q MD
Sbjct: 138 LKLRQA-----LLELRPAKN------VLID-GVLGSGKTWVA--LDVCLSYKVQCKMDFK 183
Query: 63 --WFVSEGK----DSLLIPEQT--PVMDSSMLNRCPHRSEV-QSIALAETDSSGYMVLGS 113
W ++ +++L Q +D + +R H S + I + + +
Sbjct: 184 IFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-- 240
Query: 114 VDSYGH-LIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172
Y + L+V L +V + A +F
Sbjct: 241 -KPYENCLLV--LL----NV----------------------------QN-AKAWNAF-- 262
Query: 173 SIDVYDQDIHLRTLRTLWYPSSLNFVQNLS----PVNGGPNMLAVTEGCQLTIWDLRMKE 228
++ + L T + +F+ + ++ L E L + L +
Sbjct: 263 -------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR- 314
Query: 229 NGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVH--CSKY-E 285
D+ V +++ +++ W W H C K
Sbjct: 315 -----------PQDLPREVLTTNPRRLSIIAE---SIRDGLATWD---NWKHVNCDKLTT 357
Query: 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGG-WS 344
I S + ++ VF S+ + +L W
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVF----PPSAHIPT----------------ILLSLIWF 397
Query: 345 DSGSIFVADVVAKENEISALK 365
D V VV K ++ S ++
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVE 418
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 6e-06
Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 11/161 (6%)
Query: 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVN------G 206
GL ++P+ A S +I ++D I+ + F + + V
Sbjct: 186 GLSWNPNLNGYLLSA-SDDHTICLWD--INATPKEHRVIDAKNIFTGHTAVVEDVAWHLL 242
Query: 207 GPNMLA-VTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNI-AVAGADRTV 264
++ V + +L IWD R H + ++ + + I A AD+TV
Sbjct: 243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTV 302
Query: 265 TIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD 305
++D R K EI + +S + + G D
Sbjct: 303 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 41.1 bits (95), Expect = 5e-04
Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 14/134 (10%)
Query: 152 SGLCFSP--SQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLN--------FVQNL 201
L S S ++ + I +D + P + + V ++
Sbjct: 96 HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDM 155
Query: 202 SPVNGGPNMLAV-TEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGA 260
P+M+AV + + + + S + S +AV
Sbjct: 156 KWNPTVPSMVAVCLADGSIAVLQVT---ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ 212
Query: 261 DRTVTIYDPRRWSA 274
+ TV Y P
Sbjct: 213 NGTVVQYLPTLQEK 226
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 5e-04
Identities = 24/230 (10%), Positives = 58/230 (25%), Gaps = 20/230 (8%)
Query: 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGH-LIVSKLDTSGKDVDRLTYSVLPQDC 144
+ + +I + G + L++ +D T VL +
Sbjct: 62 FTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121
Query: 145 GVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYD----QDIHLRTLRTLWYPSSLNFVQN 200
+ + + +I + + ++ SS
Sbjct: 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVL--- 178
Query: 201 LSPVNGGPNMLAV-TEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAG 259
+ +LA+ + L +++L + + I V + G V
Sbjct: 179 -HK-DS--LLLALYSPDGILDVYNLSSPDQASSRFPV-DEEAKI-KEVKFADNGYWMVVE 232
Query: 260 ADRTVTIYDPRRWSALSRW----VHCSKYEITGLSFSSIDSNYIYVQGVD 305
D+TV +D R+ + + K + +
Sbjct: 233 CDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNE 281
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 35/221 (15%), Positives = 75/221 (33%), Gaps = 27/221 (12%)
Query: 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKL-DTSGKDVDRLTYSVLPQDCGVGEG 149
+ + S A++ ++ Y++ GS +I K+ + V + S L DC
Sbjct: 62 EPNSITSSAVSPGETP-YLITGSDQ---GVI--KIWNLKEIIVGEVYSSSLTYDCS---S 112
Query: 150 SWSGLCFSPSQWSMAA-----------VARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFV 198
+ + + P+ + A V +S + +R + + + V
Sbjct: 113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV 172
Query: 199 QNLSPVNGGPNMLAV-TEGCQLTIWDLRMKENGGCLHRICGSV-GDILYAVCSSSTGN-I 255
+ + VN ++L T ++ I+D+R L I S + ++C +
Sbjct: 173 RMRAFVNEEKSLLVALTNLSRVIIFDIRT---LERLQIIENSPRHGAVSSICIDEECCVL 229
Query: 256 AVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDS 296
+ + I+D R + W IT +
Sbjct: 230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYG 270
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 369 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.98 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.98 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.98 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.98 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.98 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.98 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.98 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.98 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.96 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.96 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.95 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.95 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.93 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.93 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.93 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.92 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.92 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.91 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.91 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.91 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.9 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.83 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.83 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.82 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.82 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.82 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.81 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.81 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.81 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.8 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.79 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.79 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.78 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.78 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.78 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.77 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.77 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.77 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.76 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.75 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.74 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.73 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.73 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.73 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.72 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.72 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.71 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.7 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.7 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.68 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.64 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.64 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.63 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.63 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.63 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.62 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.6 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.59 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.59 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.57 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.56 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.54 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.54 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.49 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.44 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.43 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.43 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.41 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.4 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.4 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.39 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.38 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.36 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.33 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.32 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.32 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.28 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.27 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.25 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.25 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.24 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.22 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.21 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.17 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.17 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.16 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.15 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.15 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.14 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.14 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.14 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.06 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.06 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.06 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.04 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.03 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.03 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.03 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.01 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.99 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.97 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.94 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.93 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.93 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.88 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.87 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.87 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.87 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.85 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.8 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.78 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.75 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.69 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.68 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.65 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.61 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.6 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.56 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.52 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.51 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.49 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.49 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.46 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.45 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.37 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.36 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.35 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.32 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.32 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.26 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.2 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.14 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.13 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.11 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.09 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.08 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.04 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.03 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.03 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.03 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.02 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.99 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.98 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.92 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.85 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.71 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.69 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.69 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.66 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.65 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.64 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.58 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.57 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.55 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.55 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.48 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.45 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.42 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.4 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.39 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.37 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.33 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.32 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.3 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.13 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.12 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.12 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.02 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.9 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.88 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.88 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.84 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.77 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.7 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.63 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.62 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.58 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.57 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.55 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.51 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.33 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.28 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.27 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.24 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.22 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.05 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.93 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 95.93 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 95.91 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 95.77 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.76 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.57 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.56 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.41 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.37 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 94.84 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 94.53 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 94.37 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 94.33 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.26 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 94.25 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 93.73 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 93.68 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 92.72 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 92.66 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 92.54 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 91.96 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 91.59 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 91.48 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 91.39 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 91.38 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 90.89 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 90.56 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 90.36 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 90.29 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 90.24 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 89.98 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 89.02 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 87.76 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 86.76 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 86.2 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 84.17 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 83.97 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 82.17 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 81.86 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=276.61 Aligned_cols=260 Identities=15% Similarity=0.127 Sum_probs=203.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..+|.+.|++++|+|++..+..++++++.++.|++|++..... ...+.+..|. .++.+++|+|+ ..+++++
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---~~~~~l~gh~-----~~v~~~~~~~~-~~~l~s~ 98 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---DLQWSLEGHQ-----LGVVSVDISHT-LPIAASS 98 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---EEEEEECCCS-----SCEEEEEECSS-SSEEEEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---eeeeeeccCC-----CCEEEEEECCC-CCEEEEE
Confidence 4689999999999986433356899999999999999975411 1122333333 34678999995 4577877
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
+.|++|++||............++..+..+. ++|++..|++++.|++|++||++++ +....+..+ ...|.++
T Consensus 99 -s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~---~spdg~~l~~g~~dg~v~i~~~~~~---~~~~~~~~~-~~~v~~~ 170 (321)
T 3ow8_A 99 -SLDAHIRLWDLENGKQIKSIDAGPVDAWTLA---FSPDSQYLATGTHVGKVNIFGVESG---KKEYSLDTR-GKFILSI 170 (321)
T ss_dssp -ETTSEEEEEETTTTEEEEEEECCTTCCCCEE---ECTTSSEEEEECTTSEEEEEETTTC---SEEEEEECS-SSCEEEE
T ss_pred -eCCCcEEEEECCCCCEEEEEeCCCccEEEEE---ECCCCCEEEEEcCCCcEEEEEcCCC---ceeEEecCC-CceEEEE
Confidence 8999999999864332222222333332333 2356778889999999999999988 677777665 6789999
Q ss_pred EECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 248 CSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
+|+|++ +|++|+.|++|++||+++++.+.++.+| ...|++++|+| ++++|++++.|++|++||++++++...+.+|.
T Consensus 171 ~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 248 (321)
T 3ow8_A 171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-CCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence 999999 9999999999999999999999999999 99999999999 99999999999999999999999999999998
Q ss_pred Ce-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 327 NW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 327 ~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
.+ ..+..++++.+|++++.|++|++||+.+++. +..+.+|
T Consensus 249 ~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~h 289 (321)
T 3ow8_A 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC-VHTFFDH 289 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCC
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE-EEEEcCC
Confidence 43 3445577999999999999999999988763 4445444
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-36 Score=275.57 Aligned_cols=244 Identities=15% Similarity=0.115 Sum_probs=199.7
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|...|.+++|++++ .++++++.++.|++||+.++. ....+..+.. .+..++|+|+ ...+++
T Consensus 75 ~l~gh~~~v~~~~~~~~~----~~l~s~s~D~~i~lWd~~~~~-----~~~~~~~~~~-----~~~~~~~spd-g~~l~~ 139 (321)
T 3ow8_A 75 SLEGHQLGVVSVDISHTL----PIAASSSLDAHIRLWDLENGK-----QIKSIDAGPV-----DAWTLAFSPD-SQYLAT 139 (321)
T ss_dssp EECCCSSCEEEEEECSSS----SEEEEEETTSEEEEEETTTTE-----EEEEEECCTT-----CCCCEEECTT-SSEEEE
T ss_pred eeccCCCCEEEEEECCCC----CEEEEEeCCCcEEEEECCCCC-----EEEEEeCCCc-----cEEEEEECCC-CCEEEE
Confidence 467999999999999973 689999999999999997551 1112222211 2336999994 557788
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+ +.|+.|++||............+...+..+. ++|++..|++++.|++|++||++++ +.+..+..+ ..+|++
T Consensus 140 g-~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~---~spdg~~lasg~~dg~i~iwd~~~~---~~~~~~~~h-~~~v~~ 211 (321)
T 3ow8_A 140 G-THVGKVNIFGVESGKKEYSLDTRGKFILSIA---YSPDGKYLASGAIDGIINIFDIATG---KLLHTLEGH-AMPIRS 211 (321)
T ss_dssp E-CTTSEEEEEETTTCSEEEEEECSSSCEEEEE---ECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCC-SSCCCE
T ss_pred E-cCCCcEEEEEcCCCceeEEecCCCceEEEEE---ECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEccc-CCceeE
Confidence 7 8999999999864433333333434444444 3456778999999999999999988 788888876 689999
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD 325 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~ 325 (369)
++|+|++ +|++|+.|++|++||+++++...++.+| ...|++++|+| ++.+|++++.|++|++||+++++++..+.+|
T Consensus 212 l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h 289 (321)
T 3ow8_A 212 LTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH-ASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH 289 (321)
T ss_dssp EEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC-CCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC
Confidence 9999999 9999999999999999999999999999 99999999999 9999999999999999999999999999998
Q ss_pred CCe-eeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 326 SNW-LGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 326 ~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
... ..+...+++.+|++++.||+|++||..
T Consensus 290 ~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 290 QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 732 244446799999999999999999963
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=275.35 Aligned_cols=248 Identities=14% Similarity=0.093 Sum_probs=185.7
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
..|...|.+++|+|++ .+++++.+|.|++||+.++.. +.........|. ..+.+++|+|+ +.+|+++
T Consensus 79 ~~~~~~v~~~~~s~d~-----~l~~~s~dg~v~lWd~~~~~~-~~~~~~~~~~H~-----~~V~~v~~spd-g~~l~sg- 145 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-----GILVASDSGAVELWELDENET-LIVSKFCKYEHD-----DIVSTVSVLSS-GTQAVSG- 145 (344)
T ss_dssp EEESSCEEEEEEETTT-----EEEEEETTSEEEEEEECTTSS-CEEEEEEEECCS-----SCEEEEEECTT-SSEEEEE-
T ss_pred eccCCCEEEEEEeCCC-----eEEEEECCCEEEEEeccCCCc-eeEeeccccCCC-----CCEEEEEECCC-CCEEEEE-
Confidence 3567889999999973 677888999999999986522 111112222333 34679999994 5678888
Q ss_pred cccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCC-CcEEEEEcCCeEEEEeCCcccCCceeeeeecc-CCCcEEE
Q 017601 169 SFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGG-PNMLAVTEGCQLTIWDLRMKENGGCLHRICGS-VGDILYA 246 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~-~~~~v~~ 246 (369)
+.|++|++||............|...+..+.+. +++ ..|++++.|++|+|||++++ +++..+... ....+++
T Consensus 146 s~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~---~~~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~~~~~~ 219 (344)
T 4gqb_B 146 SKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS---PHKDSVFLSCSEDNRILLWDTRCP---KPASQIGCSAPGYLPTS 219 (344)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC---SSCTTEEEEEETTSCEEEEETTSS---SCEEECC----CCCEEE
T ss_pred eCCCeEEEEECCCCcEEEEEcCcCCceEEEEec---CCCCCceeeecccccccccccccc---ceeeeeecceeecccee
Confidence 899999999986433222222345555555533 334 35778999999999999988 666665422 1467999
Q ss_pred EEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCC-CEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 247 VCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDS-NYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 247 v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~-~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
++|+|++ +|++|+.|++|+|||+++++++.++.+| ...|++++|+| ++ ++|+++|.|++|+|||++++++. .+.
T Consensus 220 ~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h-~~~v~~v~fsp-~g~~~lasgs~D~~i~vwd~~~~~~~-~~~ 296 (344)
T 4gqb_B 220 LAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH-SQCVTGLVFSP-HSVPFLASLSEDCSLAVLDSSLSELF-RSQ 296 (344)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC-SSCEEEEEECS-SSSCCEEEEETTSCEEEECTTCCEEE-EEC
T ss_pred eeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC-CCCEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCcEE-EEc
Confidence 9999976 7899999999999999999999999999 99999999999 76 67999999999999999988764 567
Q ss_pred cCCCee-eeeEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 017601 324 GDSNWL-GFSKCSNR-DVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 324 g~~~~~-~~~~~~d~-~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+|.... .+..++++ .+|+|+|.||+|++|++.+..
T Consensus 297 ~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 297 AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 888432 34446665 578899999999999998754
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=285.44 Aligned_cols=277 Identities=13% Similarity=0.128 Sum_probs=213.4
Q ss_pred CeEEEEEEeCCchhh-hcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC
Q 017601 51 CHLYKLQVMMDDWFV-SEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG 129 (369)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~ 129 (369)
..|..+++.+.+..+ ..+.++....++..... ....+.+|.+.|++++|+|++ .++++++.+|.|++||+....
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-~~~~l~~h~~~V~~v~~~~~~----~~l~sgs~D~~i~iwd~~~~~ 183 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSG----KLLASCSADMTIKLWDFQGFE 183 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-CCEEECCCSSCEEEEEECTTS----SEEEEEETTSCCCEEETTSSC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeccCCcEEEEEEcCCC----CEEEEEeCCCeEEEEeCCCCc
Confidence 345555665554444 33445544444443333 223356899999999999974 699999999999999987541
Q ss_pred CCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCC
Q 017601 130 KDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGG 207 (369)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~ 207 (369)
....+..|. ..+.+++|+|+ +..++++ +.|++|++||... .++.+. .+...+..+.+ ++++
T Consensus 184 -----~~~~~~~h~-----~~V~~v~~~p~-~~~l~s~-s~D~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~---~~~g 246 (410)
T 1vyh_C 184 -----CIRTMHGHD-----HNVSSVSIMPN-GDHIVSA-SRDKTIKMWEVQTGYCVKTFT--GHREWVRMVRP---NQDG 246 (410)
T ss_dssp -----EEECCCCCS-----SCEEEEEECSS-SSEEEEE-ETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEE---CTTS
T ss_pred -----eeEEEcCCC-----CCEEEEEEeCC-CCEEEEE-eCCCeEEEEECCCCcEEEEEe--CCCccEEEEEE---CCCC
Confidence 112233332 34678999995 4577887 8999999999863 333332 34444444442 3567
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCC--------------------C-cEEEEeCCCcEEE
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSST--------------------G-NIAVAGADRTVTI 266 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--------------------g-~lasgs~D~~v~v 266 (369)
..+++++.|++|++||++++ .+...+..+ ...|++++|+|+ | +|++|+.|++|++
T Consensus 247 ~~l~s~s~D~~v~vwd~~~~---~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i 322 (410)
T 1vyh_C 247 TLIASCSNDQTVRVWVVATK---ECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322 (410)
T ss_dssp SEEEEEETTSCEEEEETTTC---CEEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred CEEEEEcCCCeEEEEECCCC---ceeeEecCC-CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence 78889999999999999988 777778766 689999999996 5 7999999999999
Q ss_pred EeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeC
Q 017601 267 YDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSD 345 (369)
Q Consensus 267 wD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~ 345 (369)
||+++++++.++.+| ...|++++|+| ++++|++++.|++|++||+++++++..+.+|... ..+...+++.+|++|+.
T Consensus 323 wd~~~~~~~~~~~~h-~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~ 400 (410)
T 1vyh_C 323 WDVSTGMCLMTLVGH-DNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400 (410)
T ss_dssp EETTTTEEEEEEECC-SSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred EECCCCceEEEEECC-CCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence 999999999999999 99999999999 9999999999999999999999999999999832 23444679999999999
Q ss_pred CCcEEEEECC
Q 017601 346 SGSIFVADVV 355 (369)
Q Consensus 346 dg~I~iWd~~ 355 (369)
||+|++|+++
T Consensus 401 D~~i~vW~~r 410 (410)
T 1vyh_C 401 DQTVKVWECR 410 (410)
T ss_dssp TSEEEEEC--
T ss_pred CCcEEEEeCC
Confidence 9999999863
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=272.01 Aligned_cols=250 Identities=12% Similarity=0.097 Sum_probs=196.9
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|++++|+|++ ..+++++.+|.|++||+.++. ....+..+ +..+.+++|+| +...++++
T Consensus 9 ~~~h~~~V~~~~fsp~~----~~l~s~~~dg~v~lWd~~~~~-----~~~~~~~~-----~~~v~~~~~~~-~~~~l~s~ 73 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTE----PWVLTTLYSGRVELWNYETQV-----EVRSIQVT-----ETPVRAGKFIA-RKNWIIVG 73 (304)
T ss_dssp EEEECSCEEEEEECSSS----SEEEEEETTSEEEEEETTTTE-----EEEEEECC-----SSCEEEEEEEG-GGTEEEEE
T ss_pred ecCCCCceEEEEECCCC----CEEEEEcCCCcEEEEECCCCc-----eeEEeecc-----CCcEEEEEEeC-CCCEEEEE
Confidence 56899999999999984 789999999999999997541 11222222 23466899999 45678887
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
+.|++|++||............|...+..+.+ +|++..|++++.|++|+|||++++. .....+.+| ...|+++
T Consensus 74 -s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~---~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~~h-~~~v~~v 146 (304)
T 2ynn_A 74 -SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENNW--ALEQTFEGH-EHFVMCV 146 (304)
T ss_dssp -ETTSEEEEEETTTCCEEEEEECCSSCEEEEEE---CSSSSEEEEEETTSCEEEEEGGGTT--EEEEEECCC-CSCEEEE
T ss_pred -CCCCEEEEEECCCCcEEEEEeCCCCcEEEEEE---cCCCCEEEEECCCCeEEEEECCCCc--chhhhhccc-CCcEEEE
Confidence 89999999998643332223345555655553 3456789999999999999998762 344556666 6899999
Q ss_pred EECCC-C-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC-CCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 248 CSSST-G-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI-DSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 248 ~~sp~-g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~-d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+|+|+ + .|++|+.|++|++||+++..+...+..++...+..+.|+|. ++.+|++++.|++|++||+++++++..+.+
T Consensus 147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~ 226 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226 (304)
T ss_dssp EECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC
Confidence 99994 5 89999999999999999887776665442788999999872 667999999999999999999999999999
Q ss_pred CCCee-eeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 325 DSNWL-GFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 325 ~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
|.... .+...+++.+|++|+.||+|++||+++++.
T Consensus 227 h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 98433 233467999999999999999999988763
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=283.18 Aligned_cols=255 Identities=16% Similarity=0.216 Sum_probs=209.1
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+.+|.+.|++++|+|++ .++++++.+|.|++||+.++.. ...+..|. ..+.+++|+|+ +.+++
T Consensus 102 ~~l~gh~~~V~~~~~~p~~----~~l~s~s~Dg~i~vwd~~~~~~-----~~~l~~h~-----~~V~~v~~~~~-~~~l~ 166 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVF----SVMVSASEDATIKVWDYETGDF-----ERTLKGHT-----DSVQDISFDHS-GKLLA 166 (410)
T ss_dssp CEEECCSSCEEEEEECSSS----SEEEEEESSSCEEEEETTTCCC-----CEEECCCS-----SCEEEEEECTT-SSEEE
T ss_pred EeecccCCcEEEEEEcCCC----CEEEEEeCCCeEEEEECCCCcE-----EEEEeccC-----CcEEEEEEcCC-CCEEE
Confidence 3466899999999999984 6899999999999999986521 12233332 24668999995 55788
Q ss_pred EEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 166 VARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
++ +.|++|++||... .++.+ ..|...+..+.+ .|++..+++++.|++|++||++++ .++..+.++ ...
T Consensus 167 sg-s~D~~i~iwd~~~~~~~~~~--~~h~~~V~~v~~---~p~~~~l~s~s~D~~i~~wd~~~~---~~~~~~~~h-~~~ 236 (410)
T 1vyh_C 167 SC-SADMTIKLWDFQGFECIRTM--HGHDHNVSSVSI---MPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGH-REW 236 (410)
T ss_dssp EE-ETTSCCCEEETTSSCEEECC--CCCSSCEEEEEE---CSSSSEEEEEETTSEEEEEETTTC---CEEEEEECC-SSC
T ss_pred EE-eCCCeEEEEeCCCCceeEEE--cCCCCCEEEEEE---eCCCCEEEEEeCCCeEEEEECCCC---cEEEEEeCC-Ccc
Confidence 88 8999999999864 33333 224445555553 345778999999999999999998 788888877 688
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCC--------------------CCEEEEE
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSID--------------------SNYIYVQ 302 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d--------------------~~~l~s~ 302 (369)
|.+++|+|++ +|++|+.|++|++||++++++...+.+| ...|.+++|+| + +.+|+++
T Consensus 237 v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 237 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH-RHVVECISWAP-ESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECC-SCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCC-CceEEEEEEcC-cccccchhhhccccccccCCCCCEEEEE
Confidence 9999999999 9999999999999999999999999999 99999999999 5 6789999
Q ss_pred ECCCeEEEEECcCCceeEEEEcCCCee-eeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 303 GVDYEVFCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
+.|++|++||++++.++..+.+|..+. .+...+++.+|++|+.||+|++||+.+++. +..+.+|.
T Consensus 315 s~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~-~~~~~~h~ 380 (410)
T 1vyh_C 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC-MKTLNAHE 380 (410)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC-CEEEECCS
T ss_pred eCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-EEEEcCCC
Confidence 999999999999999999999998543 444567999999999999999999987753 45565553
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=271.71 Aligned_cols=250 Identities=13% Similarity=0.077 Sum_probs=182.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..+|.+.|.+++|+|++ .+++++.+|.|++||+.++... ....+....| ...+.+++|+|+ ..+++++
T Consensus 90 ~~~~~~~V~~~~~s~d~-----~~l~~s~dg~v~lWd~~~~~~~-~~~~~~~~~h-----~~~V~~v~~spd-g~~l~sg 157 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEK-----GILVASDSGAVELWEILEKESL-LVNKFAKYEH-----DDIVKTLSVFSD-GTQAVSG 157 (357)
T ss_dssp EEECSSCEEEEEEETTT-----EEEEEETTSCEEEC---------CCCCEEECCC-----SSCEEEEEECSS-SSEEEEE
T ss_pred cCCCCCCEEEEEEcCCC-----CEEEEECCCEEEEeecccccee-EEEeeccCCC-----CCCEEEEEECCC-CCEEEEE
Confidence 45799999999999984 3445667899999999865221 1111222222 234678999994 5577887
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCC-CcEEEEEcCCeEEEEeCCcccCCceeeeeec-cCCCcEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGG-PNMLAVTEGCQLTIWDLRMKENGGCLHRICG-SVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~-~~~~~v~ 245 (369)
+.|++|++||............+...+..+.+.+ ++ ..+++++.|++|+|||++++ +++..+.. .....++
T Consensus 158 -s~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~---~~~~~~~s~~~dg~v~~wd~~~~---~~~~~~~~~~~~~~v~ 230 (357)
T 4g56_B 158 -GKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP---GKDTIFLSCGEDGRILLWDTRKP---KPATRIDFCASDTIPT 230 (357)
T ss_dssp -ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT---TCSSCEEEEETTSCEEECCTTSS---SCBCBCCCTTCCSCEE
T ss_pred -eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc---CCCceeeeeccCCceEEEECCCC---ceeeeeeecccccccc
Confidence 8999999999864433222223445555554332 33 47888999999999999988 55444332 1147899
Q ss_pred EEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCC-CEEEEEECCCeEEEEECcCCceeEEE
Q 017601 246 AVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDS-NYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 246 ~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~-~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
+++|+|++ +|++|+.|+.|++||+++++++.++.+| ...|++++|+| ++ ++|++++.|++|+|||+++++++..+
T Consensus 231 ~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp-~~~~~lasgs~D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 231 SVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH-SQNITGLAYSY-HSSPFLASISEDCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp EEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC-SSCEEEEEECS-SSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred chhhhhcccceEEEeecccceeEEECCCCcEeEEEecc-ceeEEEEEEcC-CCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence 99999986 7899999999999999999999999999 99999999999 65 68999999999999999998877655
Q ss_pred EcCCCe-eeeeEcC-CCCEEEEEeCCCcEEEEECCCCcc
Q 017601 323 RGDSNW-LGFSKCS-NRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 323 ~g~~~~-~~~~~~~-d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+|... ..+..+| |+.+|+|+|.||+|++|++.+...
T Consensus 309 -~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 309 -SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp -CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred -CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 67633 3444466 899999999999999999976543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=269.44 Aligned_cols=255 Identities=14% Similarity=0.158 Sum_probs=202.2
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|.+.|++++|+|++ .++++++.+|.|++||..+... ...+..+ ...+.+++|+|+ ..++++
T Consensus 50 ~l~gH~~~v~~~~~s~d~----~~l~s~s~Dg~v~iWd~~~~~~-----~~~~~~~-----~~~v~~~~~s~~-~~~l~s 114 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDS----RLLLSASQDGKLIIWDSYTTNK-----VHAIPLR-----SSWVMTCAYAPS-GNYVAC 114 (340)
T ss_dssp EECCCSSCEEEEEECTTS----SEEEEEETTTEEEEEETTTCCE-----EEEEECS-----SSCEEEEEECTT-SSEEEE
T ss_pred eecCCCCceEEEEECCCC----CEEEEEeCCCcEEEEECCCCCc-----ceEeecC-----CccEEEEEECCC-CCEEEE
Confidence 467999999999999984 7999999999999999875421 1122222 233668999995 557788
Q ss_pred EecccceEEEEeCCcc---eEEEEe-eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 167 ARSFSKSIDVYDQDIH---LRTLRT-LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
+ +.|+.|++||.... .+.... ..|...+..+.+. + ++.+++++.|++|++||++++ +++..+.+| ..
T Consensus 115 ~-~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~-~~~l~s~s~d~~i~~wd~~~~---~~~~~~~~h-~~ 185 (340)
T 1got_B 115 G-GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---D-DNQIVTSSGDTTCALWDIETG---QQTTTFTGH-TG 185 (340)
T ss_dssp E-ETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE---E-TTEEEEEETTSCEEEEETTTT---EEEEEECCC-SS
T ss_pred E-eCCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC---C-CCcEEEEECCCcEEEEECCCC---cEEEEEcCC-CC
Confidence 7 89999999997532 122222 2244444444321 2 457999999999999999988 788888866 68
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
.|++++|+|++ +|++|+.|++|++||+++++++.++.+| ...|++++|+| ++++|++++.|++|++||+++++.+..
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~ 263 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH-ESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMT 263 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-cCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 99999999999 9999999999999999999999999999 99999999999 999999999999999999999888777
Q ss_pred EEcCC---CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 322 FRGDS---NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 322 ~~g~~---~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
+..+. ....+...+++.+|++|+.||.|++||+.+++. +..+.||.
T Consensus 264 ~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~~~~~h~ 312 (340)
T 1got_B 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-AGVLAGHD 312 (340)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECCS
T ss_pred EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE-eeEeecCC
Confidence 75432 223445577999999999999999999987753 45566654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=262.20 Aligned_cols=251 Identities=17% Similarity=0.175 Sum_probs=191.2
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|.+.|++++|+|++ ..++++++.++.|++|++.............+..|. ..+.+++|+| ++.++++
T Consensus 12 ~l~gH~~~V~~l~~~~~~---~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~s~-dg~~l~s 82 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQ---PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-----HIVQDCTLTA-DGAYALS 82 (319)
T ss_dssp EECCCSSCEEEEEECSSC---TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS-----SCEEEEEECT-TSSEEEE
T ss_pred EEccccceEEEEEccCCC---ccEEEEecCCccEEEecCCCCCccccccceEEeCCc-----ccEEEEEECC-CCCEEEE
Confidence 367999999999999863 468999999999999999743211111112233332 3466899999 4567888
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+ +.|++|++||............|...+..+.+ ++++..+++++.|++|++||++. +++..+.++ ...|.+
T Consensus 83 ~-s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~---~~~~~~l~s~s~D~~i~vwd~~~----~~~~~~~~h-~~~v~~ 153 (319)
T 3frx_A 83 A-SWDKTLRLWDVATGETYQRFVGHKSDVMSVDI---DKKASMIISGSRDKTIKVWTIKG----QCLATLLGH-NDWVSQ 153 (319)
T ss_dssp E-ETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---CTTSCEEEEEETTSCEEEEETTS----CEEEEECCC-SSCEEE
T ss_pred E-eCCCEEEEEECCCCCeeEEEccCCCcEEEEEE---cCCCCEEEEEeCCCeEEEEECCC----CeEEEEecc-CCcEEE
Confidence 8 89999999998643322222335555555553 34577899999999999999974 567777766 689999
Q ss_pred EEECCC------C-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCcee
Q 017601 247 VCSSST------G-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKV 319 (369)
Q Consensus 247 v~~sp~------g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~ 319 (369)
++|+|. + .|++|+.|++|++||+++.+....+.+| ...|++++|+| ++++|++++.|++|++||+++++++
T Consensus 154 ~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH-NSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAM 231 (319)
T ss_dssp EEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC-CSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEE
T ss_pred EEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC-CCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEE
Confidence 999984 4 7999999999999999999999999999 99999999999 9999999999999999999987766
Q ss_pred EEEEcCCCee-------------------------------------------------eeeEcCCCCEEEEEeCCCcEE
Q 017601 320 FAFRGDSNWL-------------------------------------------------GFSKCSNRDVLGGWSDSGSIF 350 (369)
Q Consensus 320 ~~~~g~~~~~-------------------------------------------------~~~~~~d~~~l~sgs~dg~I~ 350 (369)
..+..+.... .+..++||++|++|+.||.|+
T Consensus 232 ~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 232 YTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311 (319)
T ss_dssp EEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence 6665433211 222345778888888888888
Q ss_pred EEECCCC
Q 017601 351 VADVVAK 357 (369)
Q Consensus 351 iWd~~~~ 357 (369)
+||+.++
T Consensus 312 vWd~~t~ 318 (319)
T 3frx_A 312 VWQVMTA 318 (319)
T ss_dssp EEEEEEC
T ss_pred EEEEeec
Confidence 8887654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=265.13 Aligned_cols=254 Identities=16% Similarity=0.164 Sum_probs=201.7
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|.+.|++++|+|++ .++++++.+|.|++||..+... ...+..+. ..+.+++|+|+ ...+++
T Consensus 59 ~l~gH~~~V~~~~~s~d~----~~l~s~s~Dg~v~vWd~~~~~~-----~~~~~~~~-----~~v~~~~~sp~-g~~las 123 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDK----RRIVSSSQDGKVIVWDSFTTNK-----EHAVTMPC-----TWVMACAYAPS-GCAIAC 123 (354)
T ss_dssp EEECCSSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCCE-----EEEEECSS-----SCCCEEEECTT-SSEEEE
T ss_pred EecCCCCeEEEEEECCCC----CEEEEEeCCCeEEEEECCCCCc-----ceEEecCC-----CCEEEEEECCC-CCEEEE
Confidence 357999999999999984 7999999999999999865421 11122121 22458999995 567888
Q ss_pred EecccceEEEEeCCc--------ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 167 ARSFSKSIDVYDQDI--------HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
+ +.|+.+++|+... ....+ ..|...+..+.+ .+++..|++++.|++|++||++++ +++..+.+
T Consensus 124 g-~~d~~i~v~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~---~~~~~~l~t~s~D~~v~lwd~~~~---~~~~~~~~ 194 (354)
T 2pbi_B 124 G-GLDNKCSVYPLTFDKNENMAAKKKSV--AMHTNYLSACSF---TNSDMQILTASGDGTCALWDVESG---QLLQSFHG 194 (354)
T ss_dssp E-STTSEEEEEECCCCTTCCSGGGCEEE--EECSSCEEEEEE---CSSSSEEEEEETTSEEEEEETTTC---CEEEEEEC
T ss_pred e-eCCCCEEEEEEeccccccccccceee--eccCCcEEEEEE---eCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcC
Confidence 7 8999999998641 12222 224444444443 345678999999999999999988 78888887
Q ss_pred cCCCcEEEEEECC--CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 239 SVGDILYAVCSSS--TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 239 ~~~~~v~~v~~sp--~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
| ...|.+++|+| ++ .|++|+.|++|++||+++++++..+.+| ...|++++|+| ++.+|++++.|++|++||++.
T Consensus 195 h-~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 195 H-GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-ESDVNSVRYYP-SGDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp C-SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECT-TSSEEEEEETTSCEEEEETTT
T ss_pred C-CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCC
Confidence 7 68899999987 46 9999999999999999999999999999 99999999999 999999999999999999999
Q ss_pred CceeEEEEcCC---CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 316 SSKVFAFRGDS---NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 316 ~~~~~~~~g~~---~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
++.+..+..+. ....+...+++.+|++|+.|++|++||+.+++. +..+.||.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~~l~~h~ 326 (354)
T 2pbi_B 272 DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-VSILFGHE 326 (354)
T ss_dssp TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EEEECCCS
T ss_pred CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce-EEEEECCC
Confidence 88877776543 112344467999999999999999999988763 44566654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=264.45 Aligned_cols=280 Identities=16% Similarity=0.143 Sum_probs=207.7
Q ss_pred eEEEEEEeCCchhh-hcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCC
Q 017601 52 HLYKLQVMMDDWFV-SEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGK 130 (369)
Q Consensus 52 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~ 130 (369)
.|+.+++..++..+ ..+.++.++.++..... .......|...|.+++|+|++ ..+++++.++.+++|++.....
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSG----NYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCC-EEEEEECSSSCEEEEEECTTS----SEEEEEETTCEEEEEETTTCSB
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-cceEeecCCccEEEEEECCCC----CEEEEEeCCCeEEEEECccCCC
Confidence 34455655555444 33445544433333222 222345789999999999984 6899999999999999875421
Q ss_pred CCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcE
Q 017601 131 DVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNM 210 (369)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 210 (369)
.. .....+..|. +.+.+++|++++ .++++ +.|++|++||............|...+..+.+ +|++..+
T Consensus 132 ~~-~~~~~~~~h~-----~~v~~~~~~~~~--~l~s~-s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~---~~~~~~l 199 (340)
T 1got_B 132 NV-RVSRELAGHT-----GYLSCCRFLDDN--QIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSL---APDTRLF 199 (340)
T ss_dssp SC-EEEEEEECCS-----SCEEEEEEEETT--EEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---CTTSSEE
T ss_pred cc-eeEEEecCCC-----ccEEEEEECCCC--cEEEE-ECCCcEEEEECCCCcEEEEEcCCCCceEEEEE---CCCCCEE
Confidence 11 1111222332 336689998843 46777 89999999998643322222234455555553 3456788
Q ss_pred EEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc-ccCceEE
Q 017601 211 LAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC-SKYEITG 288 (369)
Q Consensus 211 la~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h-~~~~v~~ 288 (369)
++++.|++|++||++++ .++..+..+ ...|++++|+|++ +|++|+.|++|++||+++++.+..+..+ ....|++
T Consensus 200 ~sg~~d~~v~~wd~~~~---~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 200 VSGACDASAKLWDVREG---MCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp EEEETTSCEEEEETTTC---SEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred EEEeCCCcEEEEECCCC---eeEEEEcCC-cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 89999999999999988 788888876 6899999999999 9999999999999999998887776532 0457999
Q ss_pred EEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCee-eeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 289 LSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 289 l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
++|+| ++++|++++.|+.|++||+.+++.+..+.+|.... .+..++++.+|++|+.||+|++||
T Consensus 276 ~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 276 VSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECC-CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999 99999999999999999999999999999998432 344467999999999999999996
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=259.21 Aligned_cols=259 Identities=14% Similarity=0.153 Sum_probs=203.1
Q ss_pred ccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 85 MLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 85 ~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
...+.+|.+.|++++|+|++ ..+++++.+|.+++|+...+. ....+..|. .++.+++|+|+ +.++
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~----~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~h~-----~~v~~~~~~~~-~~~l 80 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNG----EWLASSSADKLIKIWGAYDGK-----FEKTISGHK-----LGISDVAWSSD-SNLL 80 (312)
T ss_dssp EEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCC-----EEEEECCCS-----SCEEEEEECTT-SSEE
T ss_pred EEEEcccCCcEEEEEECCCC----CEEEEeeCCCeEEEEeCCCcc-----cchhhccCC-----CceEEEEEcCC-CCEE
Confidence 34567999999999999984 689999999999999987541 112223332 34678999994 5677
Q ss_pred EEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 165 AVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+++ +.|+.|++||............+...+..+.+ ++++..+++++.|++|++||++++ +++..+..+ ..+|
T Consensus 81 ~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~-~~~v 152 (312)
T 4ery_A 81 VSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF---NPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAH-SDPV 152 (312)
T ss_dssp EEE-ETTSEEEEEETTTCCEEEEEECCSSCEEEEEE---CSSSSEEEEEETTSCEEEEETTTC---CEEEEECCC-SSCE
T ss_pred EEE-CCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE---cCCCCEEEEEeCCCcEEEEECCCC---EEEEEecCC-CCcE
Confidence 887 89999999998643222222234444544443 346778999999999999999988 778887766 6899
Q ss_pred EEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 245 YAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 245 ~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
.+++|+|++ +|++|+.|+.|++||+++++.+..+..+....+..++|+| ++++|++++.|+.|++||+++++++..+.
T Consensus 153 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence 999999999 9999999999999999999888876544277899999999 99999999999999999999999999998
Q ss_pred cCCCeee-e--eE-cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 324 GDSNWLG-F--SK-CSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 324 g~~~~~~-~--~~-~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
+|..... + .. .+++.+|++|+.||.|++||+.+++. +..+++|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~ 279 (312)
T 4ery_A 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT 279 (312)
T ss_dssp SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE-EEEECCCS
T ss_pred ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh-hhhhhccC
Confidence 8862111 1 11 24789999999999999999988763 45566653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=271.43 Aligned_cols=291 Identities=13% Similarity=0.098 Sum_probs=213.8
Q ss_pred CeEEEEEEeCCchhh-hcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC
Q 017601 51 CHLYKLQVMMDDWFV-SEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG 129 (369)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~ 129 (369)
..|+.+++.+.+..+ ..+.++.++.++..... ....+..|...|.+++|+|++ ..+++++.++.+.+|++....
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~h~~~v~~~~~s~~g----~~las~~~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-KTHAIKLHCPWVMECAFAPNG----QSVACGGLDSACSIFNLSSQA 141 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-EEEEEECCCTTCCCCEECTTS----SEEEECCSSSCCEEEECCCCS
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-cceEEecCCCCEEEEEECCCC----CEEEEeeCCCcEEEEECCCCc
Confidence 446666777766555 44556655444443332 233356899999999999984 789999999999999997542
Q ss_pred CCCc--cccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEe---eeCCcceeeeccCC
Q 017601 130 KDVD--RLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRT---LWYPSSLNFVQNLS 202 (369)
Q Consensus 130 ~~~~--~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~---~~~~~~v~~~~~~~ 202 (369)
.... .....+..|. +.+.+++|+|.++..++++ +.|++|++||... .+..+.. ..|...+..+.+.+
T Consensus 142 ~~~~~~~~~~~~~gh~-----~~v~~~~~~~~~~~~l~s~-s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 142 DRDGNMPVSRVLTGHK-----GYASSCQYVPDQETRLITG-SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp SCCCSSTTCCBCCCCS-----SCCCCCBCCSSSSSCEEEE-CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred cccCCccceeeccCCC-----cceEEEEEecCCCCEEEEE-CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 1100 0011122332 2344789999777788888 9999999999863 3332211 12333444444322
Q ss_pred CCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc
Q 017601 203 PVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC 281 (369)
Q Consensus 203 ~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h 281 (369)
+++..|++++.|++|++||++... .++..+.+| ...|++++|+|++ +|++|+.|++|++||+++++.+..+..+
T Consensus 216 --~~~~~l~sgs~D~~v~~wd~~~~~--~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 216 --LNANMFISGSCDTTVRLWDLRITS--RAVRTYHGH-EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp --SSCCEEEEEETTSCEEEEETTTTC--CCCEEECCC-SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred --CCCCEEEEEECCCeEEEEECCCCC--cceEEECCc-CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 245788899999999999998542 567777766 6899999999999 9999999999999999999988877654
Q ss_pred c------cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE----EcCCCe-eeeeEcCCCCEEEEEeCCCcEE
Q 017601 282 S------KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF----RGDSNW-LGFSKCSNRDVLGGWSDSGSIF 350 (369)
Q Consensus 282 ~------~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~----~g~~~~-~~~~~~~d~~~l~sgs~dg~I~ 350 (369)
. ...|++++|+| ++++|++++.|+.|++||+..++....+ .+|... ..+..++|+.+|++||.||+|+
T Consensus 291 ~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK 369 (380)
T ss_dssp CSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred ccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEE
Confidence 1 12489999999 9999999999999999999998888877 567632 2344477999999999999999
Q ss_pred EEECCCCc
Q 017601 351 VADVVAKE 358 (369)
Q Consensus 351 iWd~~~~~ 358 (369)
+|++...+
T Consensus 370 iW~~~~~~ 377 (380)
T 3iz6_a 370 IWAFSGHR 377 (380)
T ss_dssp EEECCSSS
T ss_pred EEecCCCc
Confidence 99998764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-34 Score=264.87 Aligned_cols=262 Identities=14% Similarity=0.052 Sum_probs=190.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC--CCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG--KDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
...|...|++++|+||+ .+|++++ ++.+++||..... ........... ......+.++.+++|+|+ . .++
T Consensus 26 ~~~~~~~v~~~~fs~dG----~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~d-~-~l~ 97 (344)
T 4gqb_B 26 PACMERQLEAARYRSDG----ALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFC-SAGVQTEAGVADLTWVGE-R-GIL 97 (344)
T ss_dssp CSSCCSEEEEEEECTTS----CEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGC-SEEEEESSCEEEEEEETT-T-EEE
T ss_pred cccccCCEEEEEECCCC----CEEEEEe-CCceEEeeceeeeeccccccCCccee-eeeeccCCCEEEEEEeCC-C-eEE
Confidence 34578889999999984 5666665 4455555532110 00000000000 000112346789999995 3 567
Q ss_pred EEecccceEEEEeCC--cceEEE--EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC
Q 017601 166 VARSFSKSIDVYDQD--IHLRTL--RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~--~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~ 241 (369)
++ +.|++|+|||.. +..... ....|...+..+.+ +|++..|++++.|++|+|||++++ +++..+.+| .
T Consensus 98 ~~-s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~---spdg~~l~sgs~d~~i~iwd~~~~---~~~~~~~~h-~ 169 (344)
T 4gqb_B 98 VA-SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSV---LSSGTQAVSGSKDICIKVWDLAQQ---VVLSSYRAH-A 169 (344)
T ss_dssp EE-ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTTT---EEEEEECCC-S
T ss_pred EE-ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEE---CCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCc-C
Confidence 77 899999999975 233322 22345556666553 456788999999999999999988 888888877 7
Q ss_pred CcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeecc--ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 242 DILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWV--HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 242 ~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~--~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
..|++++|+|++ +|++|+.|++|++||++++++..++. .| ...+++++|+|.++++|++++.|++|++||+++++
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP-GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS 248 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeeccee-eccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence 899999999998 68999999999999999999888775 34 56799999999667889999999999999999999
Q ss_pred eeEEEEcCCCee-eeeEcCCC-CEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 318 KVFAFRGDSNWL-GFSKCSNR-DVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 318 ~~~~~~g~~~~~-~~~~~~d~-~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
++..+.+|.... .+..++++ .+|++||.|++|+|||+.+++. ..+.||.
T Consensus 249 ~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~--~~~~~H~ 299 (344)
T 4gqb_B 249 CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL--FRSQAHR 299 (344)
T ss_dssp CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE--EEECCCS
T ss_pred EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE--EEEcCCC
Confidence 999999998432 34446676 6899999999999999988763 3456664
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-33 Score=259.28 Aligned_cols=283 Identities=14% Similarity=0.104 Sum_probs=208.6
Q ss_pred CeEEEEEEeCCchhh-hcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC
Q 017601 51 CHLYKLQVMMDDWFV-SEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG 129 (369)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~ 129 (369)
..|+.+++...+..+ ..+.++..+.++..... .......|...|.+++|+|++ ..+++++.++.+.+|++....
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~~~~~~v~~~~~sp~g----~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-KEHAVTMPCTWVMACAYAPSG----CAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCEEEECTTS----SEEEEESTTSEEEEEECCCCT
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-cceEEecCCCCEEEEEECCCC----CEEEEeeCCCCEEEEEEeccc
Confidence 334555665554443 44455554444433222 122244688899999999984 789999999999999987542
Q ss_pred CCCc-cccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCC
Q 017601 130 KDVD-RLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNG 206 (369)
Q Consensus 130 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~ 206 (369)
.... .....+..| ...+.+++|+|+ ...++++ +.|++|++||... .+..+. .|...+..+...+ +++
T Consensus 140 ~~~~~~~~~~~~~h-----~~~v~~~~~~~~-~~~l~t~-s~D~~v~lwd~~~~~~~~~~~--~h~~~v~~~~~~~-~~~ 209 (354)
T 2pbi_B 140 NENMAAKKKSVAMH-----TNYLSACSFTNS-DMQILTA-SGDGTCALWDVESGQLLQSFH--GHGADVLCLDLAP-SET 209 (354)
T ss_dssp TCCSGGGCEEEEEC-----SSCEEEEEECSS-SSEEEEE-ETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECC-CSS
T ss_pred cccccccceeeecc-----CCcEEEEEEeCC-CCEEEEE-eCCCcEEEEeCCCCeEEEEEc--CCCCCeEEEEEEe-CCC
Confidence 1111 111122222 234678999995 4567777 8999999999864 333332 2444444444322 134
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc-ccC
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC-SKY 284 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h-~~~ 284 (369)
+..|++++.|++|++||++++ +++..+..| ...|++++|+|++ .|++|+.|++|++||+++.+.+..+..+ ...
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~---~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSG---QCVQAFETH-ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTC---CEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred CCEEEEEeCCCeEEEEECCCC---cEEEEecCC-CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 568999999999999999998 788888766 6899999999999 9999999999999999998877766543 145
Q ss_pred ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCee-eeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
.+++++|+| ++.+|++++.|++|++||+.+++.+..+.+|.... .+..++|+.+|++|+.||+|++|+
T Consensus 286 ~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 286 GASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ceeEEEEeC-CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 789999999 99999999999999999999999999999998432 344477999999999999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=283.08 Aligned_cols=248 Identities=13% Similarity=0.100 Sum_probs=193.8
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|++++|+|++ .+||+++.+|+|++||+..... .....+..|. +.+.+++|+|++ ..++++
T Consensus 55 ~~~h~~~v~~~~~spdg----~~lasg~~d~~v~lWd~~~~~~---~~~~~~~~~~-----~~v~~v~fs~dg-~~l~~~ 121 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSG----YYCASGDVHGNVRIWDTTQTTH---ILKTTIPVFS-----GPVKDISWDSES-KRIAAV 121 (611)
T ss_dssp ECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEESSSTTC---CEEEEEECSS-----SCEEEEEECTTS-CEEEEE
T ss_pred ecCCCCceEEEEECCCC----cEEEEEeCCCCEEEeECCCCcc---eeeEeecccC-----CceEEEEECCCC-CEEEEE
Confidence 56899999999999984 7999999999999999864321 1112222332 346789999965 456665
Q ss_pred ecc---cceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCC-cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 168 RSF---SKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 168 ~s~---d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
+.. ++.|++||.+.....+. .|...+..+.+. |++. .|++++.|++|++||.++. +++..+.+| ...
T Consensus 122 ~~~~~~~~~v~~wd~~~~~~~l~--gh~~~v~~v~f~---p~~~~~l~s~s~D~~v~lwd~~~~---~~~~~l~~H-~~~ 192 (611)
T 1nr0_A 122 GEGRERFGHVFLFDTGTSNGNLT--GQARAMNSVDFK---PSRPFRIISGSDDNTVAIFEGPPF---KFKSTFGEH-TKF 192 (611)
T ss_dssp ECCSSCSEEEEETTTCCBCBCCC--CCSSCEEEEEEC---SSSSCEEEEEETTSCEEEEETTTB---EEEEEECCC-SSC
T ss_pred ECCCCceeEEEEeeCCCCcceec--CCCCCceEEEEC---CCCCeEEEEEeCCCeEEEEECCCC---eEeeeeccc-cCc
Confidence 232 25899999776554432 244455555543 4444 5888999999999999877 778888877 689
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-------ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-------HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-------~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
|++++|+|+| +||+|+.|++|++||+++++.+..+. +| ...|++++|+| ++++|++++.|++|++||+++
T Consensus 193 V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h-~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~ 270 (611)
T 1nr0_A 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH-SGSVFGLTWSP-DGTKIASASADKTIKIWNVAT 270 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS-SSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred eEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccccc-CCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCC
Confidence 9999999999 99999999999999999999888874 78 99999999999 999999999999999999988
Q ss_pred CceeEEE-------------------------------------------EcCCCe-eeeeEcCCCCEEEEEeCCCcEEE
Q 017601 316 SSKVFAF-------------------------------------------RGDSNW-LGFSKCSNRDVLGGWSDSGSIFV 351 (369)
Q Consensus 316 ~~~~~~~-------------------------------------------~g~~~~-~~~~~~~d~~~l~sgs~dg~I~i 351 (369)
++++..+ .+|... ..+..++|+++|++++.|++|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~ 350 (611)
T 1nr0_A 271 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINS 350 (611)
T ss_dssp TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 7655443 356522 23444679999999999999999
Q ss_pred EECCCCcc
Q 017601 352 ADVVAKEN 359 (369)
Q Consensus 352 Wd~~~~~~ 359 (369)
||+.+++.
T Consensus 351 Wd~~~~~~ 358 (611)
T 1nr0_A 351 WDISTGIS 358 (611)
T ss_dssp EETTTCCE
T ss_pred EECCCCce
Confidence 99988764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=251.78 Aligned_cols=281 Identities=8% Similarity=-0.046 Sum_probs=201.4
Q ss_pred CeEEEEEEeCCchhh-hcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC
Q 017601 51 CHLYKLQVMMDDWFV-SEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG 129 (369)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~ 129 (369)
..|..+++.+.+..+ ..+.++....++.+... ....+..|...|.+++|+|++ ..+++++.++.|++||+.++.
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-~~~~~~~~~~~v~~~~~~~~~----~~l~s~s~d~~i~vwd~~~~~ 88 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-EVRSIQVTETPVRAGKFIARK----NWIIVGSDDFRIRVFNYNTGE 88 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEEEGGG----TEEEEEETTSEEEEEETTTCC
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-eeEEeeccCCcEEEEEEeCCC----CEEEEECCCCEEEEEECCCCc
Confidence 334445555544443 22334433333333222 222356799999999999984 789999999999999998652
Q ss_pred CCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEee-eCCcceeeeccCCCCCCCC
Q 017601 130 KDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTL-WYPSSLNFVQNLSPVNGGP 208 (369)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 208 (369)
....+..|. ..+.+++|+|+ ..+++++ +.|++|++||........... .|...+..+.+.| .++.
T Consensus 89 -----~~~~~~~h~-----~~v~~~~~~~~-~~~l~sg-s~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p--~~~~ 154 (304)
T 2ynn_A 89 -----KVVDFEAHP-----DYIRSIAVHPT-KPYVLSG-SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP--KDPS 154 (304)
T ss_dssp -----EEEEEECCS-----SCEEEEEECSS-SSEEEEE-ETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT--TCTT
T ss_pred -----EEEEEeCCC-----CcEEEEEEcCC-CCEEEEE-CCCCeEEEEECCCCcchhhhhcccCCcEEEEEECC--CCCC
Confidence 122233333 23668999995 4577887 899999999986432222222 2444455555433 1346
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECC--CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCc
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSS--TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYE 285 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~ 285 (369)
.|++++.|++|++||+++. .+...+..+....+..++|+| ++ +|++|+.|++|++||+++++++.++.+| ...
T Consensus 155 ~l~sgs~D~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h-~~~ 230 (304)
T 2ynn_A 155 TFASGCLDRTVKVWSLGQS---TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-MSN 230 (304)
T ss_dssp EEEEEETTSEEEEEETTCS---SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC-SSC
T ss_pred EEEEEeCCCeEEEEECCCC---CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC-CCC
Confidence 7888999999999999877 454444432247899999987 56 9999999999999999999999999999 999
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe-eeeeEcCCCC--EEEEEeCCCcEEEEECCC
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW-LGFSKCSNRD--VLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~--~l~sgs~dg~I~iWd~~~ 356 (369)
|++++|+| ++.+|+|++.|++|++||++++++...+.+|... ..+...+++. ++++|+.|| +.+|++.+
T Consensus 231 v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 231 VSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 99999999 9999999999999999999999999999887632 2344355543 588887666 66777754
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=262.38 Aligned_cols=258 Identities=16% Similarity=0.210 Sum_probs=195.7
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCC-------------CCCCCCCeeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQD-------------CGVGEGSWSGL 154 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l 154 (369)
..+|.+.|++++|+||+ .++|++. ++.+.+|++..+.. + ..+..+. .......+.++
T Consensus 60 ~~~h~~~V~~v~fspdg----~~la~g~-~~~v~i~~~~~g~~-~----~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v 129 (393)
T 1erj_A 60 SLDHTSVVCCVKFSNDG----EYLATGC-NKTTQVYRVSDGSL-V----ARLSDDSAANKDPENLNTSSSPSSDLYIRSV 129 (393)
T ss_dssp EEECSSCCCEEEECTTS----SEEEEEC-BSCEEEEETTTCCE-E----EEECC-----------------CCCCBEEEE
T ss_pred ecCCCCEEEEEEECCCC----CEEEEEc-CCcEEEEEecCCCE-E----EEecCccccccccccccccccCCCceeEEEE
Confidence 34799999999999984 5777765 57999999875521 0 0111000 00112236789
Q ss_pred EECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceee
Q 017601 155 CFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLH 234 (369)
Q Consensus 155 ~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~ 234 (369)
+|+|+ +.+++++ +.|++|+|||............|...+..+.+ .|++..|++++.|++|++||++++ ++..
T Consensus 130 ~~s~d-g~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~p~~~~l~s~s~d~~v~iwd~~~~---~~~~ 201 (393)
T 1erj_A 130 CFSPD-GKFLATG-AEDRLIRIWDIENRKIVMILQGHEQDIYSLDY---FPSGDKLVSGSGDRTVRIWDLRTG---QCSL 201 (393)
T ss_dssp EECTT-SSEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---CTTSSEEEEEETTSEEEEEETTTT---EEEE
T ss_pred EECCC-CCEEEEE-cCCCeEEEEECCCCcEEEEEccCCCCEEEEEE---cCCCCEEEEecCCCcEEEEECCCC---eeEE
Confidence 99994 5578887 89999999998644332222335555555553 346778999999999999999988 7777
Q ss_pred eeeccCCCcEEEEEECC-CC-cEEEEeCCCcEEEEeCCCceeeeec-------cccccCceEEEEEcCCCCCEEEEEECC
Q 017601 235 RICGSVGDILYAVCSSS-TG-NIAVAGADRTVTIYDPRRWSALSRW-------VHCSKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 235 ~~~~~~~~~v~~v~~sp-~g-~lasgs~D~~v~vwD~~~~~~~~~~-------~~h~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
.+.++ ..+.+++|+| ++ +|++|+.|++|++||+++++.+..+ .+| ...|++++|+| ++++|++++.|
T Consensus 202 ~~~~~--~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~-~g~~l~s~s~d 277 (393)
T 1erj_A 202 TLSIE--DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTR-DGQSVVSGSLD 277 (393)
T ss_dssp EEECS--SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECT-TSSEEEEEETT
T ss_pred EEEcC--CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC-CCCEEEEEECC-CCCEEEEEeCC
Confidence 77766 8899999999 77 9999999999999999998887766 578 89999999999 99999999999
Q ss_pred CeEEEEECcC------------CceeEEEEcCCCee-eeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 306 YEVFCGQWRE------------SSKVFAFRGDSNWL-GFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 306 ~~i~vwd~~~------------~~~~~~~~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
++|++||+++ +.+...+.+|..+. .+...+++.+|++|+.|+.|++||+++++. +..++||.
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~-~~~l~~h~ 352 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP-LLMLQGHR 352 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE-EEEEECCS
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE-EEEECCCC
Confidence 9999999975 34567788888432 334456899999999999999999998864 45566664
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=264.20 Aligned_cols=242 Identities=14% Similarity=0.192 Sum_probs=184.9
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
+...|++++|+|++ ..+++++.+|.|++||+.+.. ....+..|. ..+.+++|+|++ ..++++ +.
T Consensus 122 ~~~~v~~v~~s~dg----~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~-----~~v~~~~~~p~~-~~l~s~-s~ 185 (393)
T 1erj_A 122 SDLYIRSVCFSPDG----KFLATGAEDRLIRIWDIENRK-----IVMILQGHE-----QDIYSLDYFPSG-DKLVSG-SG 185 (393)
T ss_dssp CCCBEEEEEECTTS----SEEEEEETTSCEEEEETTTTE-----EEEEECCCS-----SCEEEEEECTTS-SEEEEE-ET
T ss_pred CceeEEEEEECCCC----CEEEEEcCCCeEEEEECCCCc-----EEEEEccCC-----CCEEEEEEcCCC-CEEEEe-cC
Confidence 34469999999984 689999999999999987541 112233333 346689999954 567777 89
Q ss_pred cceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee-------eccCCCc
Q 017601 171 SKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI-------CGSVGDI 243 (369)
Q Consensus 171 d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~-------~~~~~~~ 243 (369)
|++|++||........ ...+...+..+.+.+ .++..+++++.|++|++||++++ ..+..+ .+| ...
T Consensus 186 d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~--~~~~~l~~~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~~h-~~~ 258 (393)
T 1erj_A 186 DRTVRIWDLRTGQCSL-TLSIEDGVTTVAVSP--GDGKYIAAGSLDRAVRVWDSETG---FLVERLDSENESGTGH-KDS 258 (393)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSCEEEEEECS--TTCCEEEEEETTSCEEEEETTTC---CEEEEEC------CCC-SSC
T ss_pred CCcEEEEECCCCeeEE-EEEcCCCcEEEEEEC--CCCCEEEEEcCCCcEEEEECCCC---cEEEeecccccCCCCC-CCC
Confidence 9999999986432222 222333344443322 25678888999999999999987 566555 233 588
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCc------------eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRW------------SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~------------~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
|++++|+|+| +|++|+.|++|++||+++. .+..++.+| ...|.+++|+| ++.+|++++.|++|++
T Consensus 259 v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~-~~~~l~sgs~D~~v~i 336 (393)
T 1erj_A 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQ-NDEYILSGSKDRGVLF 336 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECG-GGCEEEEEETTSEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 9999999999 9999999999999999763 345677899 99999999999 9999999999999999
Q ss_pred EECcCCceeEEEEcCCCee-eeeEc------CCCCEEEEEeCCCcEEEEECCCC
Q 017601 311 GQWRESSKVFAFRGDSNWL-GFSKC------SNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 311 wd~~~~~~~~~~~g~~~~~-~~~~~------~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
||+++++++..+.+|.... .+... +++.+|++|+.||+|++|+++..
T Consensus 337 wd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 337 WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999999999999998322 22222 26789999999999999998653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=264.92 Aligned_cols=248 Identities=15% Similarity=0.120 Sum_probs=191.7
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|++++|+|++ ..|++++.+|+|++||..+.. ....+..|.. .+.+++|+|+ ...++++
T Consensus 62 l~gH~~~V~~~~~sp~~----~~l~s~s~D~~v~iWd~~~~~-----~~~~~~~h~~-----~v~~~~~s~~-g~~las~ 126 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEK----NWIVSASQDGRLIVWNALTSQ-----KTHAIKLHCP-----WVMECAFAPN-GQSVACG 126 (380)
T ss_dssp ECCCSSCEEEEEECTTS----SCEEEEETTSEEEEEETTTTE-----EEEEEECCCT-----TCCCCEECTT-SSEEEEC
T ss_pred ccccccEEEEEEEcCCC----CEEEEEeCCCeEEEEECCCCc-----cceEEecCCC-----CEEEEEECCC-CCEEEEe
Confidence 67999999999999984 689999999999999987541 1222333332 2447999995 5677887
Q ss_pred ecccceEEEEeCCcce------EEEEe-eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee----
Q 017601 168 RSFSKSIDVYDQDIHL------RTLRT-LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI---- 236 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~------~~~~~-~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~---- 236 (369)
+.|+.|++||..... ...+. ..|...+..+.+.+ .++..|++++.|++|++||++++ +++..+
T Consensus 127 -~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~--~~~~~l~s~s~D~~i~~wd~~~~---~~~~~~~~~~ 200 (380)
T 3iz6_a 127 -GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP--DQETRLITGSGDQTCVLWDVTTG---QRISIFGSEF 200 (380)
T ss_dssp -CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS--SSSSCEEEECTTSCEEEECTTTC---CEEEEECCCS
T ss_pred -eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEec--CCCCEEEEECCCCcEEEEEcCCC---cEEEEeeccc
Confidence 899999999975211 00111 12333333333322 12457999999999999999988 666655
Q ss_pred -eccCCCcEEEEEECC-CC-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 237 -CGSVGDILYAVCSSS-TG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 237 -~~~~~~~v~~v~~sp-~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
.+| ...|.+++|+| ++ +|++|+.|++|++||++. .+.+..+.+| ...|++++|+| ++++|+++|.|++|++||
T Consensus 201 ~~~h-~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h-~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd 277 (380)
T 3iz6_a 201 PSGH-TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH-EGDINSVKFFP-DGQRFGTGSDDGTCRLFD 277 (380)
T ss_dssp SSSC-CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC-SSCCCEEEECT-TSSEEEEECSSSCEEEEE
T ss_pred CCCC-ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc-CCCeEEEEEec-CCCeEEEEcCCCeEEEEE
Confidence 334 57899999987 66 999999999999999984 6788899999 99999999999 999999999999999999
Q ss_pred CcCCceeEEEEcCCC--------eeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 313 WRESSKVFAFRGDSN--------WLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 313 ~~~~~~~~~~~g~~~--------~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+++++++..+..+.. ...+..+++|.+|++|+.||.|++||+.+++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~ 332 (380)
T 3iz6_a 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM 332 (380)
T ss_dssp TTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE
T ss_pred CCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce
Confidence 999999888865431 12344567999999999999999999987754
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=260.80 Aligned_cols=311 Identities=15% Similarity=0.144 Sum_probs=220.7
Q ss_pred CccccceeEEEecCCCceEEEEEEeCCeEEEEEEeCCchhhh--c----CCCccccccCcccccccccccCCccceeeEE
Q 017601 25 GNIQCTRLALHVNEDGCSCFVYIASGCHLYKLQVMMDDWFVS--E----GKDSLLIPEQTPVMDSSMLNRCPHRSEVQSI 98 (369)
Q Consensus 25 ~~~~~~r~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l 98 (369)
.++..+|++++|++.+++++++++ .+.+|..... . .+++-.-.......+.......+|.+.|+++
T Consensus 63 ~~~~~~~~~~GT~t~~~~n~i~i~--------~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 134 (430)
T 2xyi_A 63 KDYSVHRLILGTHTSDEQNHLLIA--------SVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRA 134 (430)
T ss_dssp CSCEEEEEEEECCCSSSCEEEEEE--------EEEEC--------------------------CEEEEEEEEESSCCSEE
T ss_pred CCcceEEEEEEEcCCCCCCEEEEE--------EEECCCCccccccccccccccccccccCCCCceEEEEEEcCCCcEEEE
Confidence 345679999999987799999988 5555532110 0 0000000000112223344567899999999
Q ss_pred EEeecCCCCceEEEEEecCCcEEEEEecCCCCCCc-----cccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccce
Q 017601 99 ALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVD-----RLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKS 173 (369)
Q Consensus 99 ~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~ 173 (369)
+|+|++ ..++++++.+|.|++|++........ .....+..|. ..+.+++|+|.+..+++++ +.|++
T Consensus 135 ~~~p~~---~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~~l~s~-~~dg~ 205 (430)
T 2xyi_A 135 RYMPQN---ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ-----KEGYGLSWNPNLNGYLLSA-SDDHT 205 (430)
T ss_dssp EEETTE---EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS-----SCCCCEEECTTSTTEEEEE-CTTSC
T ss_pred EECCCC---CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC-----CCeEEEEeCCCCCCeEEEE-eCCCe
Confidence 999963 57999999999999999986311110 1112222232 2345899999776688888 89999
Q ss_pred EEEEeCCcc------eEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 174 IDVYDQDIH------LRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 174 i~lwd~~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
|++||+... ....... .+...+..+.+.+. ++..|++++.|+.|++||++++...+.+..+..+ ...|++
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~--~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~ 282 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL--HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-TAEVNC 282 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS--CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-SSCEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC--CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-CCCeEE
Confidence 999998641 1111122 34455666665432 3457778889999999999987433566666655 589999
Q ss_pred EEECCCC--cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCC-CEEEEEECCCeEEEEECcC-------
Q 017601 247 VCSSSTG--NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDS-NYIYVQGVDYEVFCGQWRE------- 315 (369)
Q Consensus 247 v~~sp~g--~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~-~~l~s~s~D~~i~vwd~~~------- 315 (369)
++|+|++ .|++|+.|++|++||+++ ..++..+.+| ...|++++|+| ++ .+|++++.|+.|++||+..
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h-~~~v~~i~~sp-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH-KDEIFQVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC-SSCEEEEEECS-SCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC-CCCEEEEEECC-CCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence 9999999 689999999999999998 6778899999 99999999999 76 5799999999999999987
Q ss_pred -------CceeEEEEcCCC-eeeeeEcCCCC-EEEEEeCCCcEEEEECCCC
Q 017601 316 -------SSKVFAFRGDSN-WLGFSKCSNRD-VLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 316 -------~~~~~~~~g~~~-~~~~~~~~d~~-~l~sgs~dg~I~iWd~~~~ 357 (369)
.++++.+.+|.. ...+...+++. +|++++.||.|++|++...
T Consensus 361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 361 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 367788888873 23445567777 9999999999999998754
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=260.25 Aligned_cols=250 Identities=12% Similarity=0.117 Sum_probs=187.6
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEec------CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCce
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDS------YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~------~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 162 (369)
..|++.|++++|+||+ .+|++++. +|.+++|+...+...... ..... ..+.++.+++|+|++ .
T Consensus 39 ~~H~~~V~~v~fSpDG----~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~-~~~~~-----~~~~~V~~~~~s~d~-~ 107 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDG----ALLLAASSLSSRTWGGSIWVFKDPEGAPNESL-CTAGV-----QTEAGVTDVAWVSEK-G 107 (357)
T ss_dssp -CCCSEEEEEEECSSS----CEEEEEECSSSSSCCEEEEEESSCC---CGGG-CSEEE-----ECSSCEEEEEEETTT-E
T ss_pred ccccCCEEEEEECCCC----CEEEEEcCCCCccccCeEEEEECCCCCcceeE-ecccC-----CCCCCEEEEEEcCCC-C
Confidence 4699999999999984 68888876 678999987654211100 00111 123457899999953 3
Q ss_pred eEEEEecccceEEEEeCCcc----eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 163 MAAVARSFSKSIDVYDQDIH----LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
++++ +.|++|+|||+... ...+....|...+..+.+ +|++..|++++.|++|+|||++++ +++..+..
T Consensus 108 -~l~~-s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~---spdg~~l~sgs~dg~v~iwd~~~~---~~~~~~~~ 179 (357)
T 4g56_B 108 -ILVA-SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV---FSDGTQAVSGGKDFSVKVWDLSQK---AVLKSYNA 179 (357)
T ss_dssp -EEEE-ETTSCEEEC--------CCCCEEECCCSSCEEEEEE---CSSSSEEEEEETTSCEEEEETTTT---EEEEEECC
T ss_pred -EEEE-ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE---CCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcC
Confidence 4555 68999999997532 122222335555555553 356778999999999999999988 78888887
Q ss_pred cCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeecc--ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 239 SVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWV--HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~--~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
+ ...|++++|+|++ .+++++.|++|++||++++++...+. .| ...+++++|+|..+.+|++++.|+.|++||++
T Consensus 180 h-~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 180 H-SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCAS-DTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp C-SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTC-CSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred C-CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccc-cccccchhhhhcccceEEEeecccceeEEECC
Confidence 6 6899999999998 89999999999999999988876554 45 67899999999446789999999999999999
Q ss_pred CCceeEEEEcCCCe-eeeeEcCCC-CEEEEEeCCCcEEEEECCCCcc
Q 017601 315 ESSKVFAFRGDSNW-LGFSKCSNR-DVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 315 ~~~~~~~~~g~~~~-~~~~~~~d~-~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
++++++.+.+|... ..+..++++ .+|++|+.|++|+|||+++++.
T Consensus 258 ~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 258 NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 99999999998733 233445665 6899999999999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=252.49 Aligned_cols=250 Identities=11% Similarity=0.099 Sum_probs=184.1
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|++.|++++|+|+ ++++++.++.|++|++....... ...+.. ......+.+++|+|+ ..+++++
T Consensus 10 ~~~h~~~v~~~~~s~~------~las~~~D~~i~lw~~~~~~~~~---~~~~~~---~~h~~~v~~v~~sp~-~~~las~ 76 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG------ILATGSTDRKIKLVSVKYDDFTL---IDVLDE---TAHKKAIRSVAWRPH-TSLLAAG 76 (330)
T ss_dssp EECCSSCEEEEEEETT------EEEEEESSSCEEEEECSSSCCEE---EEEECT---TCCCSCEEEEEECTT-SSEEEEE
T ss_pred eccCCCceeeeccCCC------EEEEEcCCCEEEEEEecCCCeEE---EEEEec---CCccCCEEEEEECCC-CCEEEEE
Confidence 5689999999999874 89999999999999997541110 111100 111234779999995 5678888
Q ss_pred ecccceEEEEeCCcc------eEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc-cCCceeeeeecc
Q 017601 168 RSFSKSIDVYDQDIH------LRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK-ENGGCLHRICGS 239 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~-~~~~~~~~~~~~ 239 (369)
+.|++|+|||.... ...+..+ .|...+..+.+ +|++..|++++.|++|+|||++.. ...+++..+..|
T Consensus 77 -s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~---sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h 152 (330)
T 2hes_X 77 -SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW---SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH 152 (330)
T ss_dssp -ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEE---CTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC
T ss_pred -eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEE---CCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC
Confidence 89999999997421 1122222 24445555553 356778999999999999999543 222456667766
Q ss_pred CCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc--eeeeeccccccCceEEEEEcCCC--CCEEEEEECCCeEEEEECc
Q 017601 240 VGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW--SALSRWVHCSKYEITGLSFSSID--SNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 240 ~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~--~~~~~~~~h~~~~v~~l~~sp~d--~~~l~s~s~D~~i~vwd~~ 314 (369)
...|++++|+|++ +|++|+.|++|++||.+++ +++..+.+| ...|.+++|+| + +.+|++++.|++|++||++
T Consensus 153 -~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 153 -SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp -SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEE
T ss_pred -CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEec
Confidence 6899999999999 9999999999999998775 678899999 99999999999 7 6789999999999999997
Q ss_pred CC--------ceeEEEEc-CCCee-eeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 315 ES--------SKVFAFRG-DSNWL-GFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 315 ~~--------~~~~~~~g-~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+ .+...+.+ |.... .+... ++.+|++++.||+|++||..+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWG-FNGLIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp EECTTSCEEEEEEEECCSCCSSCEEEEEEC-TTSCEEEEETTSCEEEEEEETTE
T ss_pred CCCccccceeEEeeecccccccceEEEEEc-CCCEEEEEeCCCEEEEEEcCCCc
Confidence 64 34444544 65222 22223 45589999999999999987763
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=253.23 Aligned_cols=252 Identities=13% Similarity=0.120 Sum_probs=191.8
Q ss_pred cCCccc-eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 88 RCPHRS-EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 88 ~~~H~~-~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
+.+|.+ +|++++|+|++ .+||+++.++.|++|++..... . ........| ...+.+++|+|+ +.+|++
T Consensus 11 ~~~h~~~~v~~l~~sp~g----~~las~~~D~~i~iw~~~~~~~-~-~~~~~~~~h-----~~~v~~~~~sp~-g~~l~s 78 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAG----TLLASCGGDRRIRIWGTEGDSW-I-CKSVLSEGH-----QRTVRKVAWSPC-GNYLAS 78 (345)
T ss_dssp ECCSTTSCEEEEEECTTS----SCEEEEETTSCEEEEEEETTEE-E-EEEEECSSC-----SSCEEEEEECTT-SSEEEE
T ss_pred ecCCCCCcEEEEEECCCC----CEEEEEcCCCeEEEEEcCCCcc-e-eeeeecccc-----CCcEEEEEECCC-CCEEEE
Confidence 457887 99999999984 7899999999999999975410 0 000111222 234678999994 567888
Q ss_pred EecccceEEEEeCCcc-eEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 167 ARSFSKSIDVYDQDIH-LRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+ +.|++|+|||.... ...+..+ .|...+..+.+ +|++..|++++.|++|++||++++....++..+..+ ...|
T Consensus 79 ~-s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~---sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h-~~~v 153 (345)
T 3fm0_A 79 A-SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAW---APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH-TQDV 153 (345)
T ss_dssp E-ETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEE---CTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC-CSCE
T ss_pred E-ECCCcEEEEEccCCCeEEEEEccCCCCCceEEEE---eCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc-CCCe
Confidence 8 89999999997532 2222222 34455655554 346778999999999999999876433455666665 6889
Q ss_pred EEEEECCCC-cEEEEeCCCcEEEEeCCCce--eeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC-----
Q 017601 245 YAVCSSSTG-NIAVAGADRTVTIYDPRRWS--ALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES----- 316 (369)
Q Consensus 245 ~~v~~sp~g-~lasgs~D~~v~vwD~~~~~--~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~----- 316 (369)
++++|+|++ +|++|+.|++|++||+++++ +..++.+| ...|++++|+| ++++|++++.|++|++||....
T Consensus 154 ~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h-~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 154 KHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH-ESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp EEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC-CCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCcc
Confidence 999999999 99999999999999998764 45788999 99999999999 9999999999999999997431
Q ss_pred ----------ceeEEEEc-CCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 317 ----------SKVFAFRG-DSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 317 ----------~~~~~~~g-~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+++..+.+ |.. ...+..++++..|++++.|+.|++|+...+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 33445555 542 2344446789999999999999999987653
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=252.75 Aligned_cols=251 Identities=14% Similarity=0.138 Sum_probs=185.2
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..+|.+.|++++|+|++ ..|++++.++.+++|++..... .....+..|. ..+.+++|+| ++.+|+++
T Consensus 57 ~~~h~~~v~~~~~sp~g----~~l~s~s~D~~v~iw~~~~~~~---~~~~~~~~h~-----~~v~~v~~sp-~~~~l~s~ 123 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCG----NYLASASFDATTCIWKKNQDDF---ECVTTLEGHE-----NEVKSVAWAP-SGNLLATC 123 (345)
T ss_dssp CSSCSSCEEEEEECTTS----SEEEEEETTSCEEEEEECCC-E---EEEEEECCCS-----SCEEEEEECT-TSSEEEEE
T ss_pred ccccCCcEEEEEECCCC----CEEEEEECCCcEEEEEccCCCe---EEEEEccCCC-----CCceEEEEeC-CCCEEEEE
Confidence 46899999999999984 6899999999999999875411 1112233332 3467899999 45678888
Q ss_pred ecccceEEEEeCCc--ceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 168 RSFSKSIDVYDQDI--HLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 168 ~s~d~~i~lwd~~~--~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+.|++|++||... ....+... .+...+..+.+ +|++..|++++.|++|++||.++++ ..+...+.+| ...|
T Consensus 124 -s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~---~p~~~~l~s~s~d~~i~~w~~~~~~-~~~~~~~~~h-~~~v 197 (345)
T 3fm0_A 124 -SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW---HPSQELLASASYDDTVKLYREEEDD-WVCCATLEGH-ESTV 197 (345)
T ss_dssp -ETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE---CSSSSCEEEEETTSCEEEEEEETTE-EEEEEEECCC-SSCE
T ss_pred -ECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE---CCCCCEEEEEeCCCcEEEEEecCCC-EEEEEEecCC-CCce
Confidence 8999999999753 22222222 24445555553 3467789999999999999998751 1244566666 6899
Q ss_pred EEEEECCCC-cEEEEeCCCcEEEEeCCC---------------ceeeeeccc-cccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 245 YAVCSSSTG-NIAVAGADRTVTIYDPRR---------------WSALSRWVH-CSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 245 ~~v~~sp~g-~lasgs~D~~v~vwD~~~---------------~~~~~~~~~-h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
++++|+|+| +|++|+.|++|+|||... ++++.++.+ | ...|++++|+| ++..|++++.|+.
T Consensus 198 ~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~-~~~~l~s~~~d~~ 275 (345)
T 3fm0_A 198 WSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH-SRTIYDIAWCQ-LTGALATACGDDA 275 (345)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSC-SSCEEEEEECT-TTCCEEEEETTSC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCC-CCcEEEEEEec-CCCEEEEEeCCCe
Confidence 999999999 999999999999999632 234455665 6 88999999999 9999999999999
Q ss_pred EEEEECcCCc----ee-----EEEEcCCCe-eeeeEcCCC-CEEEEEeCCCcEEEEECCCCcc
Q 017601 308 VFCGQWRESS----KV-----FAFRGDSNW-LGFSKCSNR-DVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 308 i~vwd~~~~~----~~-----~~~~g~~~~-~~~~~~~d~-~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
|++||..... .. ..+.+|... ..+..+|++ .+|+|||.||+|++|++.+++.
T Consensus 276 i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 276 IRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 9999987632 11 122467632 334446766 5999999999999999988764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=246.81 Aligned_cols=251 Identities=11% Similarity=0.068 Sum_probs=185.7
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC-CceeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS-QWSMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~a~ 166 (369)
+.+|.+.|++++|+|++ .+|++++.++.|++|++..... .....+..|. ..+.+++|+|. ++.+|++
T Consensus 5 ~~~h~~~V~~~~~s~~g----~~las~s~D~~v~iw~~~~~~~---~~~~~l~gH~-----~~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYG----KRMATCSSDKTIKIFEVEGETH---KLIDTLTGHE-----GPVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp CCSCSSCEEEEEECTTS----SEEEEEETTSCEEEEEBCSSCB---CCCEEECCCS-----SCEEEEEECCGGGCSEEEE
T ss_pred ccCCcCceEEEEECCCC----CEEEEEeCCCEEEEEecCCCCc---EEEEEEcccc-----CCeEEEEecCCCcCCEEEE
Confidence 56899999999999984 7899999999999999974311 1112233343 34668999874 3567888
Q ss_pred EecccceEEEEeCCcce-EEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 167 ARSFSKSIDVYDQDIHL-RTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~-~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+ +.|++|+|||..... ..+. ...|...+..+.+.|.. ++..|++++.|++|++||++++.. .....+..| ...|
T Consensus 73 ~-s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~g~~l~s~s~d~~v~~wd~~~~~~-~~~~~~~~h-~~~v 148 (297)
T 2pm7_B 73 C-SYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-YGPMLLVASSDGKVSVVEFKENGT-TSPIIIDAH-AIGV 148 (297)
T ss_dssp E-ETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTSEEEEEEBCSSSC-BCCEEEECC-SSCE
T ss_pred E-cCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCC-CCcEEEEEECCCcEEEEEecCCCc-eeeeeeecc-cCcc
Confidence 8 899999999985321 1111 22244455555543311 156888899999999999987621 113445555 5889
Q ss_pred EEEEECCC-------------C-cEEEEeCCCcEEEEeCCCce----eeeeccccccCceEEEEEcCCC---CCEEEEEE
Q 017601 245 YAVCSSST-------------G-NIAVAGADRTVTIYDPRRWS----ALSRWVHCSKYEITGLSFSSID---SNYIYVQG 303 (369)
Q Consensus 245 ~~v~~sp~-------------g-~lasgs~D~~v~vwD~~~~~----~~~~~~~h~~~~v~~l~~sp~d---~~~l~s~s 303 (369)
++++|+|+ + +|++|+.|++|++||+++++ ...++.+| ...|.+++|+| + +.+|+|+|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H-~~~V~~v~~sp-~~~~~~~las~s 226 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSP-TVLLRSYMASVS 226 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECC-CCSSSEEEEEEE
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC-CCceEEEEECC-CCCCceEEEEEE
Confidence 99999997 5 89999999999999998755 56788999 99999999999 7 48999999
Q ss_pred CCCeEEEEECcCCc---eeEEE--EcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 304 VDYEVFCGQWRESS---KVFAF--RGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 304 ~D~~i~vwd~~~~~---~~~~~--~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
.|++|++||+++.. ....+ .+|..+ ..+...+++++|++++.||+|++|+...
T Consensus 227 ~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 99999999998742 12222 344422 3445577999999999999999999864
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=244.39 Aligned_cols=253 Identities=14% Similarity=0.075 Sum_probs=194.9
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
++.+|++.|++|+|+|++ ..+|+|++.||.|++||+.............+.+|. ..+.+++|+|+ ..++++
T Consensus 33 tL~GH~~~V~~v~~sp~~---~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~-----~~V~~~~~s~d-g~~l~s 103 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQF---PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS-----HFVSDVVISSD-GQFALS 103 (340)
T ss_dssp EECCCSSCEEEEEECTTC---TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS-----SCEEEEEECTT-SSEEEE
T ss_pred EECCccCCEEEEEEeCCC---CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC-----CCEEEEEECCC-CCEEEE
Confidence 467999999999999974 469999999999999999865321111112233332 34678999994 557788
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+ +.|+.|++|+............+......... .+++..+++++.|+.+++||+.... ........+ ...+.+
T Consensus 104 ~-~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~s~s~d~~~~~~d~~~~~--~~~~~~~~~-~~~v~~ 176 (340)
T 4aow_A 104 G-SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF---SSDNRQIVSGSRDKTIKLWNTLGVC--KYTVQDESH-SEWVSC 176 (340)
T ss_dssp E-ETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---CTTSSCEEEEETTSCEEEECTTSCE--EEEECSSSC-SSCEEE
T ss_pred E-cccccceEEeecccceeeeecCCCCceeEEEE---eecCccceeecCCCeEEEEEeCCCc--eEEEEeccc-cCcccc
Confidence 7 89999999998755444333333333333332 2456789999999999999998652 222333344 588999
Q ss_pred EEECCCC---cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 247 VCSSSTG---NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 247 v~~sp~g---~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
++|++++ .+++++.|++|++||+++++.+..+.+| ...|++++|+| ++++|++++.|++|++||+++.+++..+.
T Consensus 177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h-~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 254 (340)
T 4aow_A 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLD 254 (340)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC-CCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeec
Confidence 9999886 6789999999999999999999999999 99999999999 99999999999999999999999999998
Q ss_pred cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 324 GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 324 g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
++.....+...+++. +++++.|+.|++||++++.
T Consensus 255 ~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 255 GGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp CSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTE
T ss_pred CCceEEeeecCCCCc-eeeccCCCEEEEEECCCCe
Confidence 887544555555655 5566679999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=248.91 Aligned_cols=248 Identities=12% Similarity=0.090 Sum_probs=178.0
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC-Cc-cccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD-VD-RLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+|.+.|++++|+|++ .++++++.++.|++|++...... .. .....+..|. ..+.+++|+|+ +.+|+++
T Consensus 56 ~h~~~v~~v~~sp~~----~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~sp~-g~~las~ 125 (330)
T 2hes_X 56 AHKKAIRSVAWRPHT----SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE-----NEVKGVAWSND-GYYLATC 125 (330)
T ss_dssp CCCSCEEEEEECTTS----SEEEEEETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEECTT-SCEEEEE
T ss_pred CccCCEEEEEECCCC----CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC-----CcEEEEEECCC-CCEEEEE
Confidence 499999999999984 68999999999999998643110 00 0011222332 34678999994 5678888
Q ss_pred ecccceEEEEeCCc---ceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 168 RSFSKSIDVYDQDI---HLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 168 ~s~d~~i~lwd~~~---~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
+.|++|++||... ....+... .|...+..+.+ +|++..|++++.|++|+|||.+++. ..++..+.+| ...
T Consensus 126 -s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~---~p~~~~l~s~s~D~~i~iW~~~~~~-~~~~~~~~~h-~~~ 199 (330)
T 2hes_X 126 -SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW---HPSEALLASSSYDDTVRIWKDYDDD-WECVAVLNGH-EGT 199 (330)
T ss_dssp -ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE---CSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCC-SSC
T ss_pred -eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE---CCCCCEEEEEcCCCeEEEEECCCCC-eeEEEEccCC-CCc
Confidence 8999999999842 12222222 24455655554 3467789999999999999987541 1466777766 689
Q ss_pred EEEEEECCC--C-cEEEEeCCCcEEEEeCCCc--------eeeeeccc-cccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 244 LYAVCSSST--G-NIAVAGADRTVTIYDPRRW--------SALSRWVH-CSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 244 v~~v~~sp~--g-~lasgs~D~~v~vwD~~~~--------~~~~~~~~-h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
|++++|+|+ + .|++|+.|++|++||++.+ .....+.+ | ...|++++|++ ++ +|++++.|++|++|
T Consensus 200 v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~-~~-~l~s~~~dg~v~iw 276 (330)
T 2hes_X 200 VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVH-KRQVYNVAWGF-NG-LIASVGADGVLAVY 276 (330)
T ss_dssp EEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCC-SSCEEEEEECT-TS-CEEEEETTSCEEEE
T ss_pred EEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccc-ccceEEEEEcC-CC-EEEEEeCCCEEEEE
Confidence 999999999 6 8999999999999998764 45556665 7 89999999998 65 79999999999999
Q ss_pred ECcCCc--eeEEE-EcCCC--eeeeeEcC--CCCEEEEEeCCCcEEEEECCC
Q 017601 312 QWRESS--KVFAF-RGDSN--WLGFSKCS--NRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 312 d~~~~~--~~~~~-~g~~~--~~~~~~~~--d~~~l~sgs~dg~I~iWd~~~ 356 (369)
|..+++ ..... .+|.. ...+...+ ++.+|++|+.||+|++||+++
T Consensus 277 ~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 277 EEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 998764 33333 56762 22344455 688999999999999999864
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=269.08 Aligned_cols=286 Identities=13% Similarity=0.072 Sum_probs=204.8
Q ss_pred EEEeCCeEEEEEEeCCchhhhc-CCCccccccCccccc-ccccccCCccceeeEEEEeecCCCCceEEEEEec----CCc
Q 017601 46 YIASGCHLYKLQVMMDDWFVSE-GKDSLLIPEQTPVMD-SSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDS----YGH 119 (369)
Q Consensus 46 ~~as~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~----~g~ 119 (369)
+..-...|..+++.+++.++.. +.++..+-++..... .....+.+|.+.|++++|+|++ ..+++++. .++
T Consensus 55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg----~~l~~~~~~~~~~~~ 130 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES----KRIAAVGEGRERFGH 130 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS----CEEEEEECCSSCSEE
T ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC----CEEEEEECCCCceeE
Confidence 3344455667777776666644 335544333332211 1223456899999999999984 46665543 268
Q ss_pred EEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeec
Q 017601 120 LIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQ 199 (369)
Q Consensus 120 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~ 199 (369)
|++||.... ...+..|. ..+.+++|+|+++..++++ +.|++|++||............|...+..+.
T Consensus 131 v~~wd~~~~-------~~~l~gh~-----~~v~~v~f~p~~~~~l~s~-s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~ 197 (611)
T 1nr0_A 131 VFLFDTGTS-------NGNLTGQA-----RAMNSVDFKPSRPFRIISG-SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 197 (611)
T ss_dssp EEETTTCCB-------CBCCCCCS-----SCEEEEEECSSSSCEEEEE-ETTSCEEEEETTTBEEEEEECCCSSCEEEEE
T ss_pred EEEeeCCCC-------cceecCCC-----CCceEEEECCCCCeEEEEE-eCCCeEEEEECCCCeEeeeeccccCceEEEE
Confidence 999885322 11222232 3467899999766678888 9999999999764322222223555555555
Q ss_pred cCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee-------ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC
Q 017601 200 NLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC-------GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR 271 (369)
Q Consensus 200 ~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~-------~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~ 271 (369)
++|++..|++++.|++|+|||++++ +++..+. +| ...|++++|+|+| +|++|+.|++|++||+++
T Consensus 198 ---fspdg~~las~s~D~~i~lwd~~~g---~~~~~~~~~~~~~~~h-~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~ 270 (611)
T 1nr0_A 198 ---YNPDGSLFASTGGDGTIVLYNGVDG---TKTGVFEDDSLKNVAH-SGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270 (611)
T ss_dssp ---ECTTSSEEEEEETTSCEEEEETTTC---CEEEECBCTTSSSCSS-SSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ---ECCCCCEEEEEECCCcEEEEECCCC---cEeeeecccccccccc-CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 3456778999999999999999988 6666663 34 5899999999999 999999999999999998
Q ss_pred ceeee-------------------------------------------eccccccCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 272 WSALS-------------------------------------------RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 272 ~~~~~-------------------------------------------~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
++.+. .+.+| ...|++++|+| ++++|++++.|++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh-~~~v~~l~~sp-dg~~l~s~s~D~~v 348 (611)
T 1nr0_A 271 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH-NKAITALSSSA-DGKTLFSADAEGHI 348 (611)
T ss_dssp TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC-SSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC-CCCEEEEEEeC-CCCEEEEEeCCCcE
Confidence 76543 33578 89999999999 99999999999999
Q ss_pred EEEECcCCceeEEE-EcCCCee-eeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 309 FCGQWRESSKVFAF-RGDSNWL-GFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 309 ~vwd~~~~~~~~~~-~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
++||+.++++...+ .+|.... .+... .+..|++++.|+++++|++.++.
T Consensus 349 ~~Wd~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 349 NSWDISTGISNRVFPDVHATMITGIKTT-SKGDLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp EEEETTTCCEEECSSCSCSSCEEEEEEC-TTSCEEEEETTTEEEEECSSSSS
T ss_pred EEEECCCCceeeecccCCcceEEEEEEC-CCCcEEEEEcCCceEEeecCCcc
Confidence 99999998877665 4666322 22223 44578899999999999987653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-31 Score=241.59 Aligned_cols=245 Identities=15% Similarity=0.157 Sum_probs=189.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|...|.+++|+|++ ..+++++.+|.|++||+.+.. ....+..|. ..+.+++|+|+ ...++++
T Consensus 61 ~~~h~~~v~~~~~~~~~----~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~-----~~v~~~~~~~~-~~~l~s~ 125 (312)
T 4ery_A 61 ISGHKLGISDVAWSSDS----NLLVSASDDKTLKIWDVSSGK-----CLKTLKGHS-----NYVFCCNFNPQ-SNLIVSG 125 (312)
T ss_dssp ECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCC-----EEEEEECCS-----SCEEEEEECSS-SSEEEEE
T ss_pred hccCCCceEEEEEcCCC----CEEEEECCCCEEEEEECCCCc-----EEEEEcCCC-----CCEEEEEEcCC-CCEEEEE
Confidence 56899999999999984 789999999999999997552 112233332 23568999994 5577877
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
+.|++|++||............+...+..+.+ ++++..+++++.|+.|++||++++ +.+..+.......+.++
T Consensus 126 -~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~ 198 (312)
T 4ery_A 126 -SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF---NRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVSFV 198 (312)
T ss_dssp -ETTSCEEEEETTTCCEEEEECCCSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTTC---CEEEEECCSSCCCEEEE
T ss_pred -eCCCcEEEEECCCCEEEEEecCCCCcEEEEEE---cCCCCEEEEEeCCCcEEEEECCCC---ceeeEEeccCCCceEEE
Confidence 89999999998643222222224444544443 345678889999999999999988 66666543325789999
Q ss_pred EECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceE--EEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 248 CSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT--GLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~--~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+|+|++ +|++++.|+.|++||+++++.+..+.+| ...+. ...|++.++.+|++++.|+.|++||+++++.+..+.+
T Consensus 199 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 277 (312)
T 4ery_A 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277 (312)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTTEEEEEECSS-CCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEec-CCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc
Confidence 999999 9999999999999999999999999988 65432 3345543889999999999999999999999999999
Q ss_pred CCCe-eeeeEcCCCCEEEEEe--CCCcEEEEECC
Q 017601 325 DSNW-LGFSKCSNRDVLGGWS--DSGSIFVADVV 355 (369)
Q Consensus 325 ~~~~-~~~~~~~d~~~l~sgs--~dg~I~iWd~~ 355 (369)
|... ..+...+++.+|++++ .|++|++|+..
T Consensus 278 h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 278 HTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred cCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9733 2344467999999997 69999999864
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=250.15 Aligned_cols=252 Identities=10% Similarity=0.030 Sum_probs=181.9
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC-CceeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS-QWSMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~a~ 166 (369)
+.+|.+.|++++|+|++ .+|++++.++.|++||+..+.. .....+..|. ..+.+++|+|. ++.+|++
T Consensus 9 ~~~H~~~V~~v~~s~~g----~~lasgs~D~~v~lwd~~~~~~---~~~~~l~gH~-----~~V~~v~~~~~~~~~~l~s 76 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYG----TRLATCSSDRSVKIFDVRNGGQ---ILIADLRGHE-----GPVWQVAWAHPMYGNILAS 76 (316)
T ss_dssp -----CCEEEEEECGGG----CEEEEEETTTEEEEEEEETTEE---EEEEEEECCS-----SCEEEEEECCGGGSSCEEE
T ss_pred cccccCeEEEeeEcCCC----CEEEEEeCCCeEEEEEecCCCc---EEEEEEcCCC-----ccEEEEEeCCCCCCCEEEE
Confidence 56899999999999983 7899999999999999975411 0112233343 34668999863 3567888
Q ss_pred EecccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 167 ARSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+ +.|++|++||.... ........|...+..+.+.|.. ++..|++++.|++|++||++.+........+..| ...|
T Consensus 77 ~-s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~-~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h-~~~v 153 (316)
T 3bg1_A 77 C-SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD-YGLILACGSSDGAISLLTYTGEGQWEVKKINNAH-TIGC 153 (316)
T ss_dssp E-ETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTT-TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS-SSCB
T ss_pred E-ECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCC-CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc-cCCc
Confidence 8 99999999998642 1222222344445555543321 1567888999999999999875211112334444 5789
Q ss_pred EEEEECCC-----------------C-cEEEEeCCCcEEEEeCCCc---eeeeeccccccCceEEEEEcCCCC----CEE
Q 017601 245 YAVCSSST-----------------G-NIAVAGADRTVTIYDPRRW---SALSRWVHCSKYEITGLSFSSIDS----NYI 299 (369)
Q Consensus 245 ~~v~~sp~-----------------g-~lasgs~D~~v~vwD~~~~---~~~~~~~~h~~~~v~~l~~sp~d~----~~l 299 (369)
++++|+|+ + +|++|+.|++|++||++.. +++.++.+| ...|.+++|+| ++ .+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h-~~~V~~v~~sp-~~~~~~~~l 231 (316)
T 3bg1_A 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH-SDWVRDVAWAP-SIGLPTSTI 231 (316)
T ss_dssp CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC-SSCEEEEECCC-CSSCSCCEE
T ss_pred ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC-CCceEEEEecC-CCCCCCceE
Confidence 99999997 5 8999999999999999754 567889999 99999999999 75 889
Q ss_pred EEEECCCeEEEEECcCC---c-eeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 300 YVQGVDYEVFCGQWRES---S-KVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 300 ~s~s~D~~i~vwd~~~~---~-~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
+|+|.|++|++||+++. + ....+.+|... ..+...+++.+|++++.||+|++|+...
T Consensus 232 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999999999999762 1 22344555522 3455578999999999999999999763
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=269.33 Aligned_cols=250 Identities=17% Similarity=0.155 Sum_probs=196.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|++|+|+|++ ..+|++++.+|.|++|++.............+..|. ..+.+++|+| ++.+++++
T Consensus 378 l~~H~~~V~~v~~~~~~---~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~s~-~g~~l~sg 448 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDN---ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS-----HFVEDVVLSS-DGQFALSG 448 (694)
T ss_dssp EECCSSCEEEEECCTTC---CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS-----SCEEEEEECT-TSSEEEEE
T ss_pred cccCCceeEEEEecCCC---CCEEEEEeCCCcEEEEEccCCCcccccccceecCCC-----CcEEEEEECC-CCCEEEEE
Confidence 45899999999999874 469999999999999999764221111112233333 3466899999 45678887
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee----eccCCCc
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI----CGSVGDI 243 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~----~~~~~~~ 243 (369)
+.|++|+|||............|...+..+.+ ++++..|++++.|++|+|||.... +...+ .+| ...
T Consensus 449 -s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~---s~~~~~l~s~s~D~~i~iwd~~~~----~~~~~~~~~~~h-~~~ 519 (694)
T 3dm0_A 449 -SWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF---SLDNRQIVSASRDRTIKLWNTLGE----CKYTISEGGEGH-RDW 519 (694)
T ss_dssp -ETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---CTTSSCEEEEETTSCEEEECTTSC----EEEEECSSTTSC-SSC
T ss_pred -eCCCcEEEEECCCCcceeEEeCCCCCEEEEEE---eCCCCEEEEEeCCCEEEEEECCCC----cceeeccCCCCC-CCc
Confidence 89999999998654333333345555655553 356789999999999999998654 22222 223 578
Q ss_pred EEEEEECCCC---cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeE
Q 017601 244 LYAVCSSSTG---NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVF 320 (369)
Q Consensus 244 v~~v~~sp~g---~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~ 320 (369)
|.+++|+|++ .|++|+.|++|++||+++++...++.+| ...|++++|+| ++++|++++.|++|++||+++++++.
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h-~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~ 597 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH-TGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLY 597 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEE
Confidence 9999999987 6999999999999999999999999999 99999999999 99999999999999999999999888
Q ss_pred EEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 321 AFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 321 ~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+..+.....+..++++.+|++++ |+.|++||+++++
T Consensus 598 ~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 598 SLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp CCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred EecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 887776555566677888888776 4569999998875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-31 Score=244.72 Aligned_cols=247 Identities=15% Similarity=0.098 Sum_probs=179.6
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|.+.|++++|+|++ .++++++.++.|++||+.++. ....+..|. ..+.+++|+|+ ...+++
T Consensus 71 ~l~~h~~~V~~~~~~~~~----~~l~s~s~D~~v~lwd~~~~~-----~~~~~~~h~-----~~v~~v~~sp~-~~~l~s 135 (343)
T 2xzm_R 71 ALTGHNHFVSDLALSQEN----CFAISSSWDKTLRLWDLRTGT-----TYKRFVGHQ-----SEVYSVAFSPD-NRQILS 135 (343)
T ss_dssp EECCCSSCEEEEEECSST----TEEEEEETTSEEEEEETTSSC-----EEEEEECCC-----SCEEEEEECSS-TTEEEE
T ss_pred hhccCCCceEEEEECCCC----CEEEEEcCCCcEEEEECCCCc-----EEEEEcCCC-----CcEEEEEECCC-CCEEEE
Confidence 357899999999999974 689999999999999997652 112233332 24668999995 456777
Q ss_pred EecccceEEEEeCCcceE-EEEe-eeCCcceeeeccCCCC-------CCCCcEEEEEcCCeEEEEeCCcccCCceeeeee
Q 017601 167 ARSFSKSIDVYDQDIHLR-TLRT-LWYPSSLNFVQNLSPV-------NGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC 237 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~-------~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~ 237 (369)
+ +.|++|++||...... .... ..+...+..+.+.+.. +.+..+++++.|++|++||.+ . +....+.
T Consensus 136 ~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~---~~~~~~~ 210 (343)
T 2xzm_R 136 A-GAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F---QIRYTFK 210 (343)
T ss_dssp E-ETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T---EEEEEEE
T ss_pred E-cCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C---ceeEEEc
Confidence 7 8999999999863221 1110 1233334444433221 123578889999999999943 3 4566676
Q ss_pred ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 238 GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 238 ~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
.| ...|++++|+|+| +|++|+.|++|++||+++ ..+...+ .+ ...|.+++|+| ++.+++ ++.|+.|++||+.+
T Consensus 211 ~h-~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~-~~~v~~v~~sp-~~~~la-~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 211 AH-ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DA-GSTINQIAFNP-KLQWVA-VGTDQGVKIFNLMT 285 (343)
T ss_dssp CC-SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-EC-SSCEEEEEECS-SSCEEE-EEESSCEEEEESSS
T ss_pred Cc-cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cC-CCcEEEEEECC-CCCEEE-EECCCCEEEEEeCC
Confidence 66 6899999999999 999999999999999955 3344444 34 56799999999 888776 55688999999987
Q ss_pred CceeE--EEE-----------cCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 316 SSKVF--AFR-----------GDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 316 ~~~~~--~~~-----------g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
++... .+. +|.. ...+...+++.+|++|+.||+|++|+++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 286 QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 65443 333 4542 2344557799999999999999999998764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-30 Score=235.10 Aligned_cols=252 Identities=12% Similarity=0.096 Sum_probs=193.8
Q ss_pred ccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 85 MLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 85 ~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
.+...+|.+.|.+++|+|++ .++++++ +|.+++|++................+ ...+.+++|+|+ ...+
T Consensus 44 ~~~~~~h~~~v~~~~~~~~~----~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~-~~~l 112 (337)
T 1gxr_A 44 QINTLNHGEVVCAVTISNPT----RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNR-----DNYIRSCKLLPD-GCTL 112 (337)
T ss_dssp EEEEECCSSCCCEEEECSSS----SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCT-----TSBEEEEEECTT-SSEE
T ss_pred cceeccCCCceEEEEEecCC----cEEEEcC-CCeEEEEECCCCCceeeeecccccCC-----CCcEEEEEEcCC-CCEE
Confidence 33456899999999999984 6788877 89999999986532111111111112 234778999994 5577
Q ss_pred EEEecccceEEEEeCCcce--EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 165 AVARSFSKSIDVYDQDIHL--RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
+++ +.|+.|++||..... .......+...+..+.+ ++++..+++++.|+.|++||++++ +.+..+..+ ..
T Consensus 113 ~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~l~~~~~dg~v~~~d~~~~---~~~~~~~~~-~~ 184 (337)
T 1gxr_A 113 IVG-GEASTLSIWDLAAPTPRIKAELTSSAPACYALAI---SPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGH-TD 184 (337)
T ss_dssp EEE-ESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTTT---EEEEEECCC-SS
T ss_pred EEE-cCCCcEEEEECCCCCcceeeecccCCCceEEEEE---CCCCCEEEEEeCCCcEEEEeCCCC---ceeeeeecc-cC
Confidence 777 899999999986432 22222234444444443 245678888999999999999988 777777765 68
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
.|.+++|+|++ .|++++.|+.|++||+++++.+..+. | ...+.+++|+| ++++|++++.|+.|++||+++++.. .
T Consensus 185 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~-~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~-~ 260 (337)
T 1gxr_A 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-F-TSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKY-Q 260 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C-SSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEE-E
T ss_pred ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-C-CCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeE-E
Confidence 99999999999 99999999999999999998887765 5 68899999999 9999999999999999999987654 4
Q ss_pred EEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 322 FRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 322 ~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.+|.. ...+...+++++|++++.||.|++||+.+++.
T Consensus 261 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 556652 23444577999999999999999999998764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=255.92 Aligned_cols=249 Identities=13% Similarity=0.065 Sum_probs=183.8
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+|...|++|+|+|.+ ..+||+++.+|.|++||+..... .......+|. +.+.+|+|+|.++.+|+++
T Consensus 116 ~~~~~~V~~l~~~P~~---~~~lasGs~dg~i~lWd~~~~~~---~~~~~~~gH~-----~~V~~l~f~p~~~~~l~s~- 183 (435)
T 4e54_B 116 APFDRRATSLAWHPTH---PSTVAVGSKGGDIMLWNFGIKDK---PTFIKGIGAG-----GSITGLKFNPLNTNQFYAS- 183 (435)
T ss_dssp EECSSCEEEEEECSSC---TTCEEEEETTSCEEEECSSCCSC---CEEECCCSSS-----CCCCEEEECSSCTTEEEEE-
T ss_pred CCCCCCEEEEEEeCCC---CCEEEEEeCCCEEEEEECCCCCc---eeEEEccCCC-----CCEEEEEEeCCCCCEEEEE-
Confidence 4788999999999963 46899999999999999975521 1112223333 3356899999777788988
Q ss_pred cccceEEEEeCCcce-EEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 169 SFSKSIDVYDQDIHL-RTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 169 s~d~~i~lwd~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+.|++|++||+.... +.+.... ....+..+. +++++..|++++.|++|++||++. +.+..+..| ...|++
T Consensus 184 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~g~~dg~i~~wd~~~----~~~~~~~~h-~~~v~~ 255 (435)
T 4e54_B 184 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLD---VSASSRMVVTGDNVGNVILLNMDG----KELWNLRMH-KKKVTH 255 (435)
T ss_dssp CSSSCEEEEETTSCEEEEEECCSSCSCCCCCEE---EETTTTEEEEECSSSBEEEEESSS----CBCCCSBCC-SSCEEE
T ss_pred eCCCEEEEeeccCCceeEEeccCCCCccEEEEE---ECCCCCEEEEEeCCCcEeeeccCc----ceeEEEecc-cceEEe
Confidence 999999999986433 2222211 111112222 234677888899999999999975 456666666 689999
Q ss_pred EEECCCC--cEEEEeCCCcEEEEeCCCceeeee---ccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 247 VCSSSTG--NIAVAGADRTVTIYDPRRWSALSR---WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 247 v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~---~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
++|+|++ +|++|+.|++|+|||+++.+.... ..+| ...|++++|+| ++++|++++.|++|++||++++++...
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~ 333 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH-RHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLG 333 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC-SSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccceEEEeeec-cccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceE
Confidence 9999998 788999999999999998665443 3578 89999999999 999999999999999999999888888
Q ss_pred EEcCCCee-------eeeEcCCCCEEEEEe------------CCCcEEEEECCCCcc
Q 017601 322 FRGDSNWL-------GFSKCSNRDVLGGWS------------DSGSIFVADVVAKEN 359 (369)
Q Consensus 322 ~~g~~~~~-------~~~~~~d~~~l~sgs------------~dg~I~iWd~~~~~~ 359 (369)
+.+|.... .....+++.++++++ .++.|++||..+++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~ 390 (435)
T 4e54_B 334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM 390 (435)
T ss_dssp ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence 76664110 111123455555543 346899999998864
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-30 Score=256.70 Aligned_cols=235 Identities=19% Similarity=0.228 Sum_probs=189.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..+|...|.+++|+|++ ..+++++.+|.+++|+.... ....+..|. ..+.+++|+|+ ...++++
T Consensus 340 ~~~~~~~v~~~~~s~~g----~~l~~~~~dg~v~~~~~~~~------~~~~~~~~~-----~~v~~~~~s~d-g~~l~~~ 403 (577)
T 2ymu_A 340 LTGHSSSVWGVAFSPDG----QTIASASDDKTVKLWNRNGQ------LLQTLTGHS-----SSVRGVAFSPD-GQTIASA 403 (577)
T ss_dssp ECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEETTCC------EEEEEECCS-----SCEEEEEECTT-SSCEEEE
T ss_pred EeCCCCCEEEEEECCCC----CEEEEEeCCCEEEEEcCCCC------EEEEecCCC-----CCeEEEEECCC-CCEEEEE
Confidence 56899999999999984 68999999999999996422 112222232 34678999995 5577887
Q ss_pred ecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 168 RSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 168 ~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+.|+.|++||... ..+.+. .+...+..+. ++|++..|++++.|++|++||.. + +.+..+..+ ...|++
T Consensus 404 -~~d~~v~~~~~~~~~~~~~~--~~~~~v~~~~---~s~d~~~l~~~~~d~~v~~w~~~-~---~~~~~~~~~-~~~v~~ 472 (577)
T 2ymu_A 404 -SDDKTVKLWNRNGQLLQTLT--GHSSSVWGVA---FSPDDQTIASASDDKTVKLWNRN-G---QLLQTLTGH-SSSVRG 472 (577)
T ss_dssp -ETTSEEEEECTTCCEEEEEE--CCSSCEEEEE---ECTTSSEEEEEETTSEEEEEETT-S---CEEEEEECC-SSCEEE
T ss_pred -eCCCEEEEEeCCCCEEEEec--CCCCCeEEEE---ECCCCCEEEEEcCCCEEEEEECC-C---CEEEEEcCC-CCCEEE
Confidence 8999999999753 333332 2444444444 34567788899999999999964 4 567777766 689999
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD 325 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~ 325 (369)
++|+|++ +|++++.|++|++||. +++++.++.+| ...|++++|+| ++++|++++.|+.|++||. +++++..+.+|
T Consensus 473 ~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h-~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h 548 (577)
T 2ymu_A 473 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGH 548 (577)
T ss_dssp EEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC-SSCEEEEEECT-TSSCEEEEETTSEEEEECT-TSCEEEEEECC
T ss_pred EEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC-CCCEEEEEEcC-CCCEEEEEECcCEEEEEeC-CCCEEEEEcCC
Confidence 9999999 9999999999999994 68889999999 99999999999 9999999999999999995 67889999999
Q ss_pred CCe-eeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 326 SNW-LGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 326 ~~~-~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
... ..+..++|+++|+|++.|++|++||
T Consensus 549 ~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 549 SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 832 2444577999999999999999997
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-30 Score=244.10 Aligned_cols=260 Identities=12% Similarity=0.077 Sum_probs=193.5
Q ss_pred cCCccceeeEEEEeecCCCCc---eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEEC----CCC
Q 017601 88 RCPHRSEVQSIALAETDSSGY---MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFS----PSQ 160 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~---~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----p~~ 160 (369)
+.+|...|.+++|+|+..... ..+++++.+|.|++|++.............+..+........+.+++|+ |++
T Consensus 58 ~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (397)
T 1sq9_A 58 HFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 137 (397)
T ss_dssp EECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred EecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence 458999999999999610013 6899999999999999986532110001122222100002457789999 854
Q ss_pred cee-EEEEecccceEEEEeCCc--------ceE-----EEEe-----eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEE
Q 017601 161 WSM-AAVARSFSKSIDVYDQDI--------HLR-----TLRT-----LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTI 221 (369)
Q Consensus 161 ~~~-~a~~~s~d~~i~lwd~~~--------~~~-----~~~~-----~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~i 221 (369)
.. ++++ +.|+.|++||... .+. .+.. ..+...+..+.+ ++++ .+++++.|+.|++
T Consensus 138 -~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~-~l~~~~~dg~i~i 211 (397)
T 1sq9_A 138 -SHRLVAT-DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI---SERG-LIATGFNNGTVQI 211 (397)
T ss_dssp -CEEEEEE-ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE---CTTS-EEEEECTTSEEEE
T ss_pred -ceEEEEE-eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE---CCCc-eEEEEeCCCcEEE
Confidence 45 7777 8999999998754 222 3322 123333434432 3456 8888889999999
Q ss_pred EeCCcccCCceeeeeec---cC--CCcEEEEEECCCC-cEEEEeCC---CcEEEEeCCCceeeeeccc------------
Q 017601 222 WDLRMKENGGCLHRICG---SV--GDILYAVCSSSTG-NIAVAGAD---RTVTIYDPRRWSALSRWVH------------ 280 (369)
Q Consensus 222 wD~~~~~~~~~~~~~~~---~~--~~~v~~v~~sp~g-~lasgs~D---~~v~vwD~~~~~~~~~~~~------------ 280 (369)
||++++ +.+..+.. +. ...|++++|+|++ +|++++.| +.|++||+++++++..+.+
T Consensus 212 ~d~~~~---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 212 SELSTL---RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF 288 (397)
T ss_dssp EETTTT---EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCB
T ss_pred EECCCC---ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccc
Confidence 999987 77777765 10 2889999999999 99999999 9999999999999999998
Q ss_pred -cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE------cC---------------C-CeeeeeEcCCC
Q 017601 281 -CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR------GD---------------S-NWLGFSKCSNR 337 (369)
Q Consensus 281 -h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~------g~---------------~-~~~~~~~~~d~ 337 (369)
| ...|++++|+| ++++|++++.|+.|++||+++++++..+. +| . ....+...+++
T Consensus 289 ~~-~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 289 AH-SSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp SB-SSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred cc-CCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 9 99999999999 99999999999999999999999999999 76 4 22344446677
Q ss_pred ----------CEEEEEeCCCcEEEEECCCCc
Q 017601 338 ----------DVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 338 ----------~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+|++++.||.|++||+++++
T Consensus 367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 367 WRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 799999999999999998764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-29 Score=236.35 Aligned_cols=248 Identities=15% Similarity=0.128 Sum_probs=183.7
Q ss_pred cCCccceeeEEEE-----ee-cCCCCceEEEEEecCCcEEEEEecCCCCCCc--cccccccCCCCCCCCCCeeEEEECCC
Q 017601 88 RCPHRSEVQSIAL-----AE-TDSSGYMVLGSVDSYGHLIVSKLDTSGKDVD--RLTYSVLPQDCGVGEGSWSGLCFSPS 159 (369)
Q Consensus 88 ~~~H~~~V~~l~~-----s~-~~~~~~~~las~d~~g~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~p~ 159 (369)
+.+|.+.|++++| ++ + ..+|++++.++.|++|++........ .....+..|. ..+.+++|+|+
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d----~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~-----~~V~~~~~~~~ 87 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENED----SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN-----HFVSDLALSQE 87 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCC----CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS-----SCEEEEEECSS
T ss_pred eccchhhhhheeeEEEeecCCC----CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCC-----CceEEEEECCC
Confidence 5689999999999 55 4 47999999999999999975421100 0111223332 34678999994
Q ss_pred CceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee--
Q 017601 160 QWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC-- 237 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~-- 237 (369)
..+++++ +.|++|++||............|...+..+.+ +|++..|++++.|++|++||++.. ......
T Consensus 88 -~~~l~s~-s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~---sp~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~ 158 (343)
T 2xzm_R 88 -NCFAISS-SWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF---SPDNRQILSAGAEREIKLWNILGE----CKFSSAEK 158 (343)
T ss_dssp -TTEEEEE-ETTSEEEEEETTSSCEEEEEECCCSCEEEEEE---CSSTTEEEEEETTSCEEEEESSSC----EEEECCTT
T ss_pred -CCEEEEE-cCCCcEEEEECCCCcEEEEEcCCCCcEEEEEE---CCCCCEEEEEcCCCEEEEEeccCC----ceeeeecc
Confidence 5577777 89999999998643222222235555555553 356778999999999999999743 332222
Q ss_pred -ccCCCcEEEEEECCCC-----------cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC
Q 017601 238 -GSVGDILYAVCSSSTG-----------NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 238 -~~~~~~v~~v~~sp~g-----------~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
.+ ...|.+++|+|++ +|++|+.|++|++|| .+.+....+.+| ...|++++|+| ++++|++++.|
T Consensus 159 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h-~~~v~~~~~s~-~g~~l~sgs~d 234 (343)
T 2xzm_R 159 ENH-SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAH-ESNVNHLSISP-NGKYIATGGKD 234 (343)
T ss_dssp TSC-SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECC-SSCEEEEEECT-TSSEEEEEETT
T ss_pred cCC-CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCc-cccceEEEECC-CCCEEEEEcCC
Confidence 23 5789999999984 699999999999999 456777888999 99999999999 99999999999
Q ss_pred CeEEEEECcC-CceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 306 YEVFCGQWRE-SSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 306 ~~i~vwd~~~-~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
++|++||+.. ......+........+...+++.+++++ .|+.|++||+.+++
T Consensus 235 g~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 235 KKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp CEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCC
T ss_pred CeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCC
Confidence 9999999954 4455555433334455567788887655 57889999998765
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-31 Score=254.72 Aligned_cols=258 Identities=14% Similarity=0.100 Sum_probs=191.1
Q ss_pred CCccceeeEEEEee-cCCCCceEEEEEecCCcEEEEEecCCCCCC-ccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 89 CPHRSEVQSIALAE-TDSSGYMVLGSVDSYGHLIVSKLDTSGKDV-DRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 89 ~~H~~~V~~l~~s~-~~~~~~~~las~d~~g~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+|.+.|++++|+| ++ .++++++.+|.|++||+....... ....... .| ...+.+++|+| +...+++
T Consensus 60 ~~h~~~V~~~~~s~~~~----~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h-----~~~v~~~~~~~-~~~~l~s 128 (437)
T 3gre_A 60 ENEPNSITSSAVSPGET----PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DC-----SSTVTQITMIP-NFDAFAV 128 (437)
T ss_dssp TTTTSCEEEEEEECSSS----CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-EC-----SSCEEEEEECT-TSSEEEE
T ss_pred cCCCCceEEEEECCCCC----CEEEEecCCceEEEeECcccccCcccceeeec-cC-----CCCEEEEEEeC-CCCEEEE
Confidence 67999999999999 73 799999999999999987521000 0001111 12 23577999999 5567888
Q ss_pred EecccceEEEEeCC-----cceEEEEe-----ee-----CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc
Q 017601 167 ARSFSKSIDVYDQD-----IHLRTLRT-----LW-----YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG 231 (369)
Q Consensus 167 ~~s~d~~i~lwd~~-----~~~~~~~~-----~~-----~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~ 231 (369)
+ +.|++|++||.. +..+.+.. .. +...+..+... +.+++..+++++.|++|++||++++ +
T Consensus 129 ~-s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~---~ 203 (437)
T 3gre_A 129 S-SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAF-VNEEKSLLVALTNLSRVIIFDIRTL---E 203 (437)
T ss_dssp E-ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEE-ECSSCEEEEEEETTSEEEEEETTTC---C
T ss_pred E-eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEE-EcCCCCEEEEEeCCCeEEEEeCCCC---e
Confidence 7 899999999873 11211111 00 11111111100 2245678888999999999999988 7
Q ss_pred eeeeeec--cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCC---CCCEEEEEEC
Q 017601 232 CLHRICG--SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSI---DSNYIYVQGV 304 (369)
Q Consensus 232 ~~~~~~~--~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~---d~~~l~s~s~ 304 (369)
++..+.. + ...|++++|+|++ +|++|+.||+|++||+++++++.++. .| ...|++++|+|. ++.+|++++.
T Consensus 204 ~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 204 RLQIIENSPR-HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp EEEEEECCGG-GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEEST
T ss_pred eeEEEccCCC-CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcC
Confidence 8888775 4 5899999999999 99999999999999999999999886 77 789999966541 6779999999
Q ss_pred CCeEEEEECcCCceeEEEEcCCCeee---------------------------eeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 305 DYEVFCGQWRESSKVFAFRGDSNWLG---------------------------FSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 305 D~~i~vwd~~~~~~~~~~~g~~~~~~---------------------------~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
|++|++||+++++++..+.+|..... +... ++.+|++|+.||.|++||+.++
T Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence 99999999999999999987742111 1112 5689999999999999999988
Q ss_pred cchhhhccc
Q 017601 358 ENEISALKG 366 (369)
Q Consensus 358 ~~~~~~l~g 366 (369)
+. ...+.+
T Consensus 361 ~~-~~~~~~ 368 (437)
T 3gre_A 361 SS-SKAVIS 368 (437)
T ss_dssp GG-CEEEEC
T ss_pred cc-ceEEec
Confidence 64 344444
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.98 E-value=7.6e-30 Score=235.25 Aligned_cols=283 Identities=13% Similarity=0.066 Sum_probs=201.1
Q ss_pred CeEEEEEEeCC-chhh-hcCCCccccccCccccc----ccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEE
Q 017601 51 CHLYKLQVMMD-DWFV-SEGKDSLLIPEQTPVMD----SSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSK 124 (369)
Q Consensus 51 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~ 124 (369)
..|..+++.+. +.++ ..+.++.++.++..... .....+.+|.+.|.+++|+|++ ..+++++.+|.+++|+
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg----~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG----QFALSGSWDGTLRLWD 114 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEE
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC----CEEEEEcccccceEEe
Confidence 34555666554 3333 44555554433332111 1222357899999999999984 7899999999999999
Q ss_pred ecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEE-EeeeCCcceeeeccCCC
Q 017601 125 LDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTL-RTLWYPSSLNFVQNLSP 203 (369)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~-~~~~~~~~v~~~~~~~~ 203 (369)
...... ......+ ......+.+++. ...++++ +.|+.+++||........ ....+...+..+.+.+.
T Consensus 115 ~~~~~~-----~~~~~~~-----~~~~~~~~~~~~-~~~l~s~-s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 115 LTTGTT-----TRRFVGH-----TKDVLSVAFSSD-NRQIVSG-SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp TTTTEE-----EEEEECC-----SSCEEEEEECTT-SSCEEEE-ETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred ecccce-----eeeecCC-----CCceeEEEEeec-Cccceee-cCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 875411 1111111 112346788884 4577877 899999999986443322 22223444444443322
Q ss_pred CCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccc
Q 017601 204 VNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCS 282 (369)
Q Consensus 204 ~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~ 282 (369)
+....+++++.|++|++||++++ +.+..+..+ ...|++++|+|++ +|++|+.|++|++||+++.+++..+..+
T Consensus 183 -~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~- 256 (340)
T 4aow_A 183 -SSNPIIVSCGWDKLVKVWNLANC---KLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG- 256 (340)
T ss_dssp -SSSCEEEEEETTSCEEEEETTTT---EEEEEECCC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-
T ss_pred -CCCcEEEEEcCCCEEEEEECCCC---ceeeEecCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-
Confidence 22346778889999999999988 777777766 6899999999999 9999999999999999999999988866
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE---------cCCC-eeeeeEcCCCCEEEEEeCCCcEEEE
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR---------GDSN-WLGFSKCSNRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~---------g~~~-~~~~~~~~d~~~l~sgs~dg~I~iW 352 (369)
..|.++.|+| ++.+ ++++.|+.|++||++++..+..+. +|.. ...+..++|+++|++|+.||.|+||
T Consensus 257 -~~v~~~~~~~-~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 257 -DIINALCFSP-NRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp -SCEEEEEECS-SSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -ceEEeeecCC-CCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 6899999999 7654 566789999999999877666654 3442 1234446799999999999999999
Q ss_pred ECCCCc
Q 017601 353 DVVAKE 358 (369)
Q Consensus 353 d~~~~~ 358 (369)
|+++|.
T Consensus 334 ~~~tGt 339 (340)
T 4aow_A 334 QVTIGT 339 (340)
T ss_dssp EEEC--
T ss_pred eCCCcC
Confidence 999885
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-29 Score=231.55 Aligned_cols=242 Identities=14% Similarity=0.105 Sum_probs=190.1
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+|...|.+++|+|++ ..+++++.+|.|++|++..... .....+..+ ...+.+++|+|+ ...++++
T Consensus 94 ~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~-----~~~i~~~~~~~~-~~~l~~~- 159 (337)
T 1gxr_A 94 LNRDNYIRSCKLLPDG----CTLIVGGEASTLSIWDLAAPTP---RIKAELTSS-----APACYALAISPD-SKVCFSC- 159 (337)
T ss_dssp SCTTSBEEEEEECTTS----SEEEEEESSSEEEEEECCCC-----EEEEEEECS-----SSCEEEEEECTT-SSEEEEE-
T ss_pred cCCCCcEEEEEEcCCC----CEEEEEcCCCcEEEEECCCCCc---ceeeecccC-----CCceEEEEECCC-CCEEEEE-
Confidence 3799999999999974 6888999999999999986521 011222222 223668999994 5577777
Q ss_pred cccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 169 SFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
+.|+.|++||............+...+..+.+ ++++..+++++.|+.|++||++++ +.+..+.+. ..+.+++
T Consensus 160 ~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~--~~v~~~~ 231 (337)
T 1gxr_A 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI---SNDGTKLWTGGLDNTVRSWDLREG---RQLQQHDFT--SQIFSLG 231 (337)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---CTTSSEEEEEETTSEEEEEETTTT---EEEEEEECS--SCEEEEE
T ss_pred eCCCcEEEEeCCCCceeeeeecccCceEEEEE---CCCCCEEEEEecCCcEEEEECCCC---ceEeeecCC--CceEEEE
Confidence 89999999998643222222224445555553 345678889999999999999988 777777765 8899999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCC
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSN 327 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~ 327 (369)
|+|++ .|++++.|+.|++||+++++. ..+..| ...|++++|+| ++++|++++.|+.|++||+.+++.+........
T Consensus 232 ~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~-~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 308 (337)
T 1gxr_A 232 YCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLH-ESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS 308 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSSCE-EEECCC-SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCC-ccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEecCCCc
Confidence 99999 999999999999999998765 467788 89999999999 999999999999999999999888766654443
Q ss_pred eeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 328 WLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 328 ~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
...+...+++++|++++.||.|++|++.
T Consensus 309 v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 309 VLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 3455557799999999999999999963
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=247.52 Aligned_cols=257 Identities=14% Similarity=0.149 Sum_probs=199.0
Q ss_pred ccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 85 MLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 85 ~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
.+....|.+.|++++|+|++ .++++++.+|.|++|++....... .....+..|. ..+.+++|+|+++.++
T Consensus 60 ~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~v~vw~~~~~~~~~-~~~~~~~~h~-----~~v~~~~~~~~~~~~l 129 (416)
T 2pm9_A 60 PIASLQVDSKFNDLDWSHNN----KIIAGALDNGSLELYSTNEANNAI-NSMARFSNHS-----SSVKTVKFNAKQDNVL 129 (416)
T ss_dssp CSCCCCCSSCEEEEEECSSS----SCEEEEESSSCEEEECCSSTTSCC-CEEEECCCSS-----SCCCEEEECSSSTTBE
T ss_pred EEEEEecCCceEEEEECCCC----CeEEEEccCCeEEEeecccccccc-cchhhccCCc-----cceEEEEEcCCCCCEE
Confidence 34456799999999999984 688999999999999998631111 1122233333 2355899999757788
Q ss_pred EEEecccceEEEEeCCcce------EEEEe---eeCCcceeeeccCCCCCC-CCcEEEEEcCCeEEEEeCCcccCCceee
Q 017601 165 AVARSFSKSIDVYDQDIHL------RTLRT---LWYPSSLNFVQNLSPVNG-GPNMLAVTEGCQLTIWDLRMKENGGCLH 234 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~~------~~~~~---~~~~~~v~~~~~~~~~~~-~~~lla~s~d~~v~iwD~~~~~~~~~~~ 234 (369)
+++ +.|++|++||..... ..+.. ..+...+..+.+ +++ +..+++++.|+.|++||++++ +.+.
T Consensus 130 ~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~ 202 (416)
T 2pm9_A 130 ASG-GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW---NQSLAHVFASAGSSNFASIWDLKAK---KEVI 202 (416)
T ss_dssp EEE-CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE---CSSCTTEEEEESSSSCEEEEETTTT---EEEE
T ss_pred EEE-cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe---CCCCCcEEEEEcCCCCEEEEECCCC---Ccce
Confidence 888 899999999986432 22211 123344444443 234 456777889999999999988 6777
Q ss_pred eeeccC-----CCcEEEEEECCCC--cEEEEeCCC---cEEEEeCCCc-eeeeecc-ccccCceEEEEEcCCCCCEEEEE
Q 017601 235 RICGSV-----GDILYAVCSSSTG--NIAVAGADR---TVTIYDPRRW-SALSRWV-HCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 235 ~~~~~~-----~~~v~~v~~sp~g--~lasgs~D~---~v~vwD~~~~-~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
.+..+. ...|++++|+|++ +|++++.|+ .|++||++++ .++..+. +| ...|++++|+|.++.+|+++
T Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~ 281 (416)
T 2pm9_A 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH-QKGILSLDWCHQDEHLLLSS 281 (416)
T ss_dssp EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC-SSCEEEEEECSSCSSCEEEE
T ss_pred EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc-cCceeEEEeCCCCCCeEEEE
Confidence 666431 3789999999997 899999999 9999999986 6778888 89 99999999999788999999
Q ss_pred ECCCeEEEEECcCCceeEEEEcCCCe-eeeeEcCCC-CEEEEEeCCCcEEEEECCCCcc
Q 017601 303 GVDYEVFCGQWRESSKVFAFRGDSNW-LGFSKCSNR-DVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d~-~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.|++|++||+++++++..+.+|... ..+..++++ .+|++++.||.|++||+.+++.
T Consensus 282 ~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 282 GRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp ESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred eCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 99999999999999999999998733 244456777 8999999999999999988754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-29 Score=237.70 Aligned_cols=260 Identities=19% Similarity=0.161 Sum_probs=194.7
Q ss_pred cCCccceeeEEEEee-cCCCCceEEEEEecCCcEEEEEecCCCCCCccccc---cccCCCCCCCCCCeeEEEECCCCcee
Q 017601 88 RCPHRSEVQSIALAE-TDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTY---SVLPQDCGVGEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~-~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~p~~~~~ 163 (369)
+.+|.+.|++++|+| + ...+++++.+|.|++|++............ .............+.+++|+|.+..+
T Consensus 39 ~~~h~~~v~~~~~s~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVE----GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp CCCCSSCEEEEEECTTT----CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred eeccCCcEEEEEEecCC----CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 567999999999999 6 379999999999999999865321110000 00000111123457899999977778
Q ss_pred EEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 164 AAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
++++ +.|+.|++||....... ........+..+.+.+.++++..+++++.|+.|++||++++ +.+..+..+ ...
T Consensus 115 l~s~-~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---~~~~~~~~~-~~~ 188 (408)
T 4a11_B 115 FTSS-SFDKTLKVWDTNTLQTA-DVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG---SCSHILQGH-RQE 188 (408)
T ss_dssp EEEE-ETTSEEEEEETTTTEEE-EEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS---CCCEEECCC-CSC
T ss_pred EEEE-eCCCeEEEeeCCCCccc-eeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc---ceeeeecCC-CCc
Confidence 8888 89999999998643222 22234444555555555566668888999999999999988 677777765 689
Q ss_pred EEEEEECCCC-c-EEEEeCCCcEEEEeCCCce-eeeec---------------cccccCceEEEEEcCCCCCEEEEEECC
Q 017601 244 LYAVCSSSTG-N-IAVAGADRTVTIYDPRRWS-ALSRW---------------VHCSKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 244 v~~v~~sp~g-~-lasgs~D~~v~vwD~~~~~-~~~~~---------------~~h~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
|++++|+|++ . |++|+.|+.|++||++++. ++..+ .+| ...|++++|+| ++++|++++.|
T Consensus 189 v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~d 266 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH-NGKVNGLCFTS-DGLHLLTVGTD 266 (408)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC-SSCEEEEEECT-TSSEEEEEETT
T ss_pred EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccc-cCceeEEEEcC-CCCEEEEecCC
Confidence 9999999999 4 8999999999999998765 33343 567 89999999999 99999999999
Q ss_pred CeEEEEECcCC-----------------------------------------------ceeEEEEcCCCe-eeeeEcCCC
Q 017601 306 YEVFCGQWRES-----------------------------------------------SKVFAFRGDSNW-LGFSKCSNR 337 (369)
Q Consensus 306 ~~i~vwd~~~~-----------------------------------------------~~~~~~~g~~~~-~~~~~~~d~ 337 (369)
+.|++||++++ +++..+.+|... ..+...+++
T Consensus 267 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 346 (408)
T 4a11_B 267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF 346 (408)
T ss_dssp SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT
T ss_pred CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC
Confidence 99999998753 345566667622 234446799
Q ss_pred CEEEEEeCCCcEEEEECCCCcc
Q 017601 338 DVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 338 ~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.+|++|+.||.|++||+.+++.
T Consensus 347 ~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 347 QELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp TEEEEEETTSCEEEEEECC---
T ss_pred CEEEEECCCCeEEEEeCCCCCc
Confidence 9999999999999999988764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-30 Score=237.17 Aligned_cols=251 Identities=15% Similarity=0.119 Sum_probs=191.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC-CceeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS-QWSMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~a~ 166 (369)
+.+|.+.|++++|+|++ ..+++++.+|.|++|++....... .....+..| ...+.+++|+|. ++.++++
T Consensus 7 ~~gH~~~v~~~~~~~~~----~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~-----~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYG----RHVATCSSDQHIKVFKLDKDTSNW-ELSDSWRAH-----DSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp ECCCSSCEEEEEECSSS----SEEEEEETTSEEEEEEECSSSCCE-EEEEEEECC-----SSCEEEEEECCGGGCSEEEE
T ss_pred CcccccceeEEEEcCCC----CEEEEeeCCCeEEEEECCCCCCcc-eecceeccC-----CCcEEEEEEcCCCCCCEEEE
Confidence 46899999999999984 689999999999999998652211 111122223 234678999995 3567888
Q ss_pred EecccceEEEEeCCcce--------EEEEee-eCCcceeeeccCCCCCC--CCcEEEEEcCCeEEEEeCCcccCCceeee
Q 017601 167 ARSFSKSIDVYDQDIHL--------RTLRTL-WYPSSLNFVQNLSPVNG--GPNMLAVTEGCQLTIWDLRMKENGGCLHR 235 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~~~--~~~lla~s~d~~v~iwD~~~~~~~~~~~~ 235 (369)
+ +.|++|++||..... +.+... .+...+..+.+. ++ +..+++++.|++|++||+++++ .+..
T Consensus 77 ~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~ 149 (351)
T 3f3f_A 77 A-SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA---PAHLGLKLACLGNDGILRLYDALEPS---DLRS 149 (351)
T ss_dssp E-ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC---CGGGCSEEEEEETTCEEEEEECSSTT---CTTC
T ss_pred E-cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEc---CCCCCcEEEEecCCCcEEEecCCChH---Hhcc
Confidence 7 899999999975321 222222 344555555543 34 6688889999999999999873 3322
Q ss_pred ee-------------ccCCCcEEEEEECCC---C-cEEEEeCCCcEEEEeCCCcee--eeeccccccCceEEEEEcCCCC
Q 017601 236 IC-------------GSVGDILYAVCSSST---G-NIAVAGADRTVTIYDPRRWSA--LSRWVHCSKYEITGLSFSSIDS 296 (369)
Q Consensus 236 ~~-------------~~~~~~v~~v~~sp~---g-~lasgs~D~~v~vwD~~~~~~--~~~~~~h~~~~v~~l~~sp~d~ 296 (369)
+. .+ ...+++++|+|+ + .+++++.|+.+.+|+...++. +..+.+| ...|++++|+| ++
T Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~~p-~~ 226 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANH-LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH-KSLIRSISWAP-SI 226 (351)
T ss_dssp CEEEEEEESCSCCCSSC-SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC-CSCEEEEEECC-CS
T ss_pred ccccccccccccccCCc-ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC-CcceeEEEECC-CC
Confidence 21 22 478999999997 6 999999999998888877654 7788899 99999999999 87
Q ss_pred ----CEEEEEECCCeEEEEECcCC----------------------------------------------ceeEEEEcCC
Q 017601 297 ----NYIYVQGVDYEVFCGQWRES----------------------------------------------SKVFAFRGDS 326 (369)
Q Consensus 297 ----~~l~s~s~D~~i~vwd~~~~----------------------------------------------~~~~~~~g~~ 326 (369)
++|++++.|+.|++||++.+ +++..+.+|.
T Consensus 227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 227 GRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp SCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred CCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 79999999999999999874 5677778887
Q ss_pred Ce-eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 327 NW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 327 ~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.. ..+...+++.+|++|+.||.|++||+.+++
T Consensus 307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 32 234446799999999999999999998875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-30 Score=239.92 Aligned_cols=245 Identities=13% Similarity=0.107 Sum_probs=187.6
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.|.+.|.+++|+|+....+.++++++.+|.|++||+.+.. ....+..|. ..+.+++|+|.++.+++++ +
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~-----~~i~~~~~~~~~~~~l~s~-~ 135 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-----CIKHYVGHG-----NAINELKFHPRDPNLLLSV-S 135 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-----EEEEEESCC-----SCEEEEEECSSCTTEEEEE-E
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-----EeeeecCCC-----CcEEEEEECCCCCCEEEEE-e
Confidence 4789999999999853335799999999999999987541 112233232 3467899999666778887 8
Q ss_pred ccceEEEEeCCcceEEEEe---eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec--------
Q 017601 170 FSKSIDVYDQDIHLRTLRT---LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG-------- 238 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~-------- 238 (369)
.|++|++||.......... ..+...+..+.+ ++++..|++++.|+.|++||++++ +.+..+..
T Consensus 136 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~ 209 (366)
T 3k26_A 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMDHSLKLWRINSK---RMMNAIKESYDYNPNK 209 (366)
T ss_dssp TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE---CTTSSEEEEEETTSCEEEEESCSH---HHHHHHHHHHTCCGGG
T ss_pred CCCeEEEEEeecCeEEEEecccccccCceeEEEE---CCCCCEEEEecCCCCEEEEECCCC---ccccccceeEEecCCC
Confidence 9999999998643322222 234455555554 345778999999999999999976 33332221
Q ss_pred --------------------cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCcee--------------eeecccccc
Q 017601 239 --------------------SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSA--------------LSRWVHCSK 283 (369)
Q Consensus 239 --------------------~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~--------------~~~~~~h~~ 283 (369)
+ ...|.+++|+ + +|++++.|+.|++||++++.. +..+.+| .
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 285 (366)
T 3k26_A 210 TNRPFISQKIHFPDFSTRDIH-RNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS-Q 285 (366)
T ss_dssp CSSCCCCEEECCCSEEECSSC-SSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS-S
T ss_pred CcccccceeeccCccccccCC-cceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc-C
Confidence 3 5889999999 5 999999999999999987643 7788889 8
Q ss_pred CceEEEEEcCCC--CCEEEEEECCCeEEEEECcCCc----eeEEEEcC---CCeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 284 YEITGLSFSSID--SNYIYVQGVDYEVFCGQWRESS----KVFAFRGD---SNWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 284 ~~v~~l~~sp~d--~~~l~s~s~D~~i~vwd~~~~~----~~~~~~g~---~~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
..|++++|+| + +++|++++.|+.|++||+++++ ....+.+| .....+..++++++|++++.||.|++||+
T Consensus 286 ~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 286 CDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp CCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 9999999999 8 9999999999999999999865 44477777 33344555779999999999999999998
Q ss_pred CC
Q 017601 355 VA 356 (369)
Q Consensus 355 ~~ 356 (369)
.+
T Consensus 365 ~~ 366 (366)
T 3k26_A 365 LR 366 (366)
T ss_dssp --
T ss_pred cC
Confidence 53
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-31 Score=250.11 Aligned_cols=294 Identities=13% Similarity=0.108 Sum_probs=204.5
Q ss_pred CCeEEEEEEeCCchhhhc-CCCccccccCccc---ccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEe
Q 017601 50 GCHLYKLQVMMDDWFVSE-GKDSLLIPEQTPV---MDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKL 125 (369)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~ 125 (369)
...|..+++...+..+.. +.++.+..++... .......+.+|.+.|++++|+|++ ..++++++.+|.|++||+
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ---DNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS---TTBEEEECSSSCEEBCBT
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC---CCEEEEEcCCCeEEEEEC
Confidence 344556666555555432 3344333333322 111333466899999999999973 368999999999999999
Q ss_pred cCCCCCCcc-ccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcc--eEEEEeee----CCcceeee
Q 017601 126 DTSGKDVDR-LTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH--LRTLRTLW----YPSSLNFV 198 (369)
Q Consensus 126 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~--~~~~~~~~----~~~~v~~~ 198 (369)
......... ....+ .........+.+++|+|+++.+++++ +.|+.|++||.... +..+.... +...+..+
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (416)
T 2pm9_A 144 NKCTESPSNYTPLTP--GQSMSSVDEVISLAWNQSLAHVFASA-GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV 220 (416)
T ss_dssp TTTSSCTTTCCCBCC--CCSCCSSCCCCEEEECSSCTTEEEEE-SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEE
T ss_pred CCCcccccccccccc--ccccCCCCCeeEEEeCCCCCcEEEEE-cCCCCEEEEECCCCCcceEEeccccccccCCceEEE
Confidence 865311000 00111 00011123456899999767788888 89999999998643 22222211 03445555
Q ss_pred ccCCCCCCC-CcEEEEEcCC---eEEEEeCCcccCCceeeeee-ccCCCcEEEEEECC-CC-cEEEEeCCCcEEEEeCCC
Q 017601 199 QNLSPVNGG-PNMLAVTEGC---QLTIWDLRMKENGGCLHRIC-GSVGDILYAVCSSS-TG-NIAVAGADRTVTIYDPRR 271 (369)
Q Consensus 199 ~~~~~~~~~-~~lla~s~d~---~v~iwD~~~~~~~~~~~~~~-~~~~~~v~~v~~sp-~g-~lasgs~D~~v~vwD~~~ 271 (369)
.+. |++ ..+++++.|+ .|++||++++. .++..+. .+ ...|++++|+| ++ +|++++.|++|++||+++
T Consensus 221 ~~~---~~~~~~l~~~~~d~~~~~i~~~d~~~~~--~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 221 EWH---PKNSTRVATATGSDNDPSILIWDLRNAN--TPLQTLNQGH-QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp EEC---SSCTTEEEEEECCSSSCCCCEEETTSTT--SCSBCCCSCC-SSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred EEC---CCCCCEEEEEECCCCCceEEEEeCCCCC--CCcEEeecCc-cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence 433 344 4677788888 99999999863 4555665 44 58999999999 77 999999999999999999
Q ss_pred ceeeeeccccccCceEEEEEcCCCC-CEEEEEECCCeEEEEECcCCceeEEE-----------------Ec---------
Q 017601 272 WSALSRWVHCSKYEITGLSFSSIDS-NYIYVQGVDYEVFCGQWRESSKVFAF-----------------RG--------- 324 (369)
Q Consensus 272 ~~~~~~~~~h~~~~v~~l~~sp~d~-~~l~s~s~D~~i~vwd~~~~~~~~~~-----------------~g--------- 324 (369)
++++.++.+| ...|++++|+| ++ .+|++++.|+.|++||+.+....... .+
T Consensus 295 ~~~~~~~~~~-~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (416)
T 2pm9_A 295 AEQLSQFPAR-GNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS 372 (416)
T ss_dssp CCEEEEEECS-SSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred CccceeecCC-CCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence 9999999999 99999999999 87 89999999999999999875422111 11
Q ss_pred ---------CCCee-eeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 325 ---------DSNWL-GFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 325 ---------~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
|.... .+..++||++|++++.|+.|+||++.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 373 VFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 22111 3445679999999999999999999865
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-30 Score=261.46 Aligned_cols=244 Identities=16% Similarity=0.108 Sum_probs=187.2
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|.+.|.+++|+|++ .++++++.+|.|++||+.++. ....+..|. ..+.+++|+|+ ...+++
T Consensus 425 ~~~~h~~~v~~v~~s~~g----~~l~sgs~Dg~v~vwd~~~~~-----~~~~~~~h~-----~~v~~~~~s~~-~~~l~s 489 (694)
T 3dm0_A 425 RLTGHSHFVEDVVLSSDG----QFALSGSWDGELRLWDLAAGV-----STRRFVGHT-----KDVLSVAFSLD-NRQIVS 489 (694)
T ss_dssp EEECCSSCEEEEEECTTS----SEEEEEETTSEEEEEETTTTE-----EEEEEECCS-----SCEEEEEECTT-SSCEEE
T ss_pred eecCCCCcEEEEEECCCC----CEEEEEeCCCcEEEEECCCCc-----ceeEEeCCC-----CCEEEEEEeCC-CCEEEE
Confidence 356899999999999984 799999999999999997541 122233333 24678999994 557788
Q ss_pred EecccceEEEEeCCcc-eEEEEe--eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 167 ARSFSKSIDVYDQDIH-LRTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
+ +.|++|++||.... ...+.. ..|...+..+.+.+.+. ...+++++.|++|+|||++++ ++...+.+| ...
T Consensus 490 ~-s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~d~~v~vwd~~~~---~~~~~~~~h-~~~ 563 (694)
T 3dm0_A 490 A-SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL-QPTIVSASWDKTVKVWNLSNC---KLRSTLAGH-TGY 563 (694)
T ss_dssp E-ETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS-SCEEEEEETTSCEEEEETTTC---CEEEEECCC-SSC
T ss_pred E-eCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC-cceEEEEeCCCeEEEEECCCC---cEEEEEcCC-CCC
Confidence 7 89999999997532 222211 12334455555433211 246888999999999999987 777888776 689
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
|++++|+|++ +|++|+.|++|++||+++++.+..+..+ ..|.+++|+| ++.+|+++ .|+.|++||+++++++..+
T Consensus 564 v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp-~~~~l~~~-~~~~i~iwd~~~~~~~~~~ 639 (694)
T 3dm0_A 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSP-NRYWLCAA-TEHGIKIWDLESKSIVEDL 639 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--SCEEEEEECS-SSSEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--CcEEEEEEcC-CCcEEEEE-cCCCEEEEECCCCCChhhh
Confidence 9999999999 9999999999999999999998888755 6799999999 88877665 4677999999998887777
Q ss_pred EcCCC--------------------eeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 323 RGDSN--------------------WLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 323 ~g~~~--------------------~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
..+.. ...+..++|+.+|++|+.||+|++|++.
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 640 KVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 54321 1233446799999999999999999985
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=242.63 Aligned_cols=262 Identities=13% Similarity=0.101 Sum_probs=197.3
Q ss_pred CCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCC
Q 017601 68 GKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVG 147 (369)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (369)
+.++.+..++.+... ....+.+|.+.|.+++|+|++ .+++++.+|.|++||+.++. ....+..|.
T Consensus 139 s~dg~i~vwd~~~~~-~~~~~~~h~~~V~~l~~~~~~-----~l~s~s~dg~i~vwd~~~~~-----~~~~~~~h~---- 203 (464)
T 3v7d_B 139 ADDKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHGG-----ILVSGSTDRTVRVWDIKKGC-----CTHVFEGHN---- 203 (464)
T ss_dssp ETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECSTT-----EEEEEETTSCEEEEETTTTE-----EEEEECCCS----
T ss_pred cCCCcEEEEECCCCc-EEEEEeCCCcCEEEEEEcCCC-----EEEEEeCCCCEEEEECCCCc-----EEEEECCCC----
Confidence 344444333433332 233356899999999999872 89999999999999997551 122233332
Q ss_pred CCCeeEEEECCC-CceeEEEEecccceEEEEeCCcceEE----------------------EEe-eeCCcceeeeccCCC
Q 017601 148 EGSWSGLCFSPS-QWSMAAVARSFSKSIDVYDQDIHLRT----------------------LRT-LWYPSSLNFVQNLSP 203 (369)
Q Consensus 148 ~~~~~~l~~~p~-~~~~~a~~~s~d~~i~lwd~~~~~~~----------------------~~~-~~~~~~v~~~~~~~~ 203 (369)
..+.+++|++. +...++++ +.|++|++||....... +.. ..+...+..+.
T Consensus 204 -~~v~~l~~~~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---- 277 (464)
T 3v7d_B 204 -STVRCLDIVEYKNIKYIVTG-SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS---- 277 (464)
T ss_dssp -SCEEEEEEEESSSCEEEEEE-ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----
T ss_pred -CccEEEEEecCCCCCEEEEE-cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc----
Confidence 34668898863 44677777 89999999998532110 111 11333333333
Q ss_pred CCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccc
Q 017601 204 VNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCS 282 (369)
Q Consensus 204 ~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~ 282 (369)
+++..+++++.|++|++||++++ +++..+..+ ...|++++|+|++ .+++|+.|++|++||+++++++.++.+|
T Consensus 278 -~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h- 351 (464)
T 3v7d_B 278 -GHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGH-TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH- 351 (464)
T ss_dssp -EETTEEEEEETTSCEEEEETTTT---EEEEEECCC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-
T ss_pred -CCCCEEEEEeCCCeEEEEECCCC---cEEEEecCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-
Confidence 35678999999999999999988 788888766 6899999999999 9999999999999999999999999999
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcch
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~ 360 (369)
...|.++.|++ .+|++++.|++|++||++++.....+........+...+++.+|++|+ ||.|++||+++++..
T Consensus 352 ~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 352 TALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp SSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred CCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence 99999999986 899999999999999999987766664332112233356899999999 899999999998753
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=245.68 Aligned_cols=257 Identities=11% Similarity=0.123 Sum_probs=188.6
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCC--cc----ccccccCCCCC-------CCCCCeeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDV--DR----LTYSVLPQDCG-------VGEGSWSGL 154 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~--~~----~~~~~~~~~~~-------~~~~~~~~l 154 (369)
...|.+.|.+++|+|++ .+||+++.+|.|++|++....... .. ....+..|... ..+..+.++
T Consensus 24 ~~~~~~~V~~v~~s~~g----~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 24 DVAEADIISTVEFNHSG----ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp CCCGGGSEEEEEECSSS----SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred cccccCcEEEEEECCCC----CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence 45688999999999984 799999999999999998653100 00 01122233200 001346689
Q ss_pred EECCCCc-eeEEEEecccceEEEEeCCcceEE--------------------------------------EEe--eeCCc
Q 017601 155 CFSPSQW-SMAAVARSFSKSIDVYDQDIHLRT--------------------------------------LRT--LWYPS 193 (369)
Q Consensus 155 ~~~p~~~-~~~a~~~s~d~~i~lwd~~~~~~~--------------------------------------~~~--~~~~~ 193 (369)
+|+|++. ..++++ +.|++|++||....... .+. ..|..
T Consensus 100 ~~~~~~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 100 RWLPQKNAAQFLLS-TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EECCCCSSSEEEEE-ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEcCCCCcceEEEe-CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 9999653 577777 89999999997531110 001 12334
Q ss_pred ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee-------eeccCCCcEEEEEECCCC--cEEEEeCCCcE
Q 017601 194 SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR-------ICGSVGDILYAVCSSSTG--NIAVAGADRTV 264 (369)
Q Consensus 194 ~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~-------~~~~~~~~v~~v~~sp~g--~lasgs~D~~v 264 (369)
.+..+.+ ++++..|+++ .|++|+|||+++.. ..+.. +..+ ...|++++|+|++ +|++|+.|++|
T Consensus 179 ~v~~~~~---~~~~~~l~s~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 179 HINSISI---NSDYETYLSA-DDLRINLWHLEITD--RSFNIVDIKPANMEEL-TEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CCCEEEE---CTTSSEEEEE-CSSEEEEEETTEEE--EEEEEEECCCSSGGGC-CCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred ceEEEEE---cCCCCEEEEe-CCCeEEEEECCCCC--ceeeeeeccccccccc-CcceEEEEECCCCCcEEEEEeCCCeE
Confidence 4444443 3456677776 89999999999542 34442 3344 5889999999997 89999999999
Q ss_pred EEEeCCCcee----eeeccccccC------------ceEEEEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCCC
Q 017601 265 TIYDPRRWSA----LSRWVHCSKY------------EITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDSN 327 (369)
Q Consensus 265 ~vwD~~~~~~----~~~~~~h~~~------------~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~ 327 (369)
++||+++++. +..+.+| .. .|++++|+| ++++|++++. +.|++||++. ++++..+.+|..
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~ 328 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEP-EDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEY 328 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC------CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred EEEECcCCccccceeeEeccC-CCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeecccc
Confidence 9999999887 6788888 65 899999999 9999999999 9999999997 889999998863
Q ss_pred eee----------------eeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 328 WLG----------------FSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 328 ~~~----------------~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
... +...+++.+|++|+.||.|++||+.+++.
T Consensus 329 ~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 329 LRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp GTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred ccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 222 45577999999999999999999998764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=238.62 Aligned_cols=252 Identities=10% Similarity=0.021 Sum_probs=186.6
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEE------EECCCCc
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGL------CFSPSQW 161 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~p~~~ 161 (369)
..+|.+.|.+++|+|+. .+...+++++.+|.|++|++..... ....+..|. ..+.++ +|+| +.
T Consensus 61 ~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~-----~~v~~~~~~~~~~~s~-~~ 129 (357)
T 3i2n_A 61 EIEKAKPIKCGTFGATS-LQQRYLATGDFGGNLHIWNLEAPEM----PVYSVKGHK-----EIINAIDGIGGLGIGE-GA 129 (357)
T ss_dssp EEEESSCEEEEECTTCC-TTTCCEEEEETTSCEEEECTTSCSS----CSEEECCCS-----SCEEEEEEESGGGCC--CC
T ss_pred eecccCcEEEEEEcCCC-CCCceEEEecCCCeEEEEeCCCCCc----cEEEEEecc-----cceEEEeeccccccCC-Cc
Confidence 45799999999999972 1136889999999999999986521 112223332 235567 4567 44
Q ss_pred eeEEEEecccceEEEEeCCc---ceEEEEeeeC--CcceeeeccC-CCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee
Q 017601 162 SMAAVARSFSKSIDVYDQDI---HLRTLRTLWY--PSSLNFVQNL-SPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR 235 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~---~~~~~~~~~~--~~~v~~~~~~-~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~ 235 (369)
..++++ +.|+.|++||... ....+..... ...+..+.+. .+++++..+++++.|+.|++||++++ +....
T Consensus 130 ~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~ 205 (357)
T 3i2n_A 130 PEIVTG-SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM---ALRWE 205 (357)
T ss_dssp CEEEEE-ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT---EEEEE
T ss_pred cEEEEE-eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC---ceeee
Confidence 577877 8999999999863 3343332221 1133333211 14567778888999999999999987 55555
Q ss_pred eeccCCCcEEEEEECC---CC-cEEEEeCCCcEEEEeCCCceeeeecc-----ccccCceEEEEEcCCCCC-EEEEEECC
Q 017601 236 ICGSVGDILYAVCSSS---TG-NIAVAGADRTVTIYDPRRWSALSRWV-----HCSKYEITGLSFSSIDSN-YIYVQGVD 305 (369)
Q Consensus 236 ~~~~~~~~v~~v~~sp---~g-~lasgs~D~~v~vwD~~~~~~~~~~~-----~h~~~~v~~l~~sp~d~~-~l~s~s~D 305 (369)
..+. ..|++++|+| ++ .|++|+.|+.|++||++++++...+. +| ...|++++|+| ++. +|++++.|
T Consensus 206 ~~~~--~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~~l~~~~~d 281 (357)
T 3i2n_A 206 TNIK--NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQVRHLP-QNRELFLTAGGA 281 (357)
T ss_dssp EECS--SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC-SSCEEEEEEET-TEEEEEEEEETT
T ss_pred cCCC--CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC-cCCEEEEEECC-CCCcEEEEEeCC
Confidence 5554 8999999999 88 99999999999999999887766655 89 99999999999 888 89999999
Q ss_pred CeEEEEECcCC-------------------ceeEEEEcCCCe-eeeeEcCCCCEEE-EEeCCCcEEEEECCCCc
Q 017601 306 YEVFCGQWRES-------------------SKVFAFRGDSNW-LGFSKCSNRDVLG-GWSDSGSIFVADVVAKE 358 (369)
Q Consensus 306 ~~i~vwd~~~~-------------------~~~~~~~g~~~~-~~~~~~~d~~~l~-sgs~dg~I~iWd~~~~~ 358 (369)
+.|++||++.+ +++..+.+|... ..+...+++.+|+ +++.||.|++||+.+.+
T Consensus 282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 99999999863 356778888732 2344467888888 89999999999998654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-29 Score=246.44 Aligned_cols=248 Identities=19% Similarity=0.231 Sum_probs=196.6
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.++|.+++|+|++ ..+++++.+|.+++|+..... ...+..+. ..+.+++|+|+ ...++++
T Consensus 299 ~~~h~~~v~~~~~~~~~----~~l~t~~~d~~i~~w~~~~~~------~~~~~~~~-----~~v~~~~~s~~-g~~l~~~ 362 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDG----QTIASASDDKTVKLWNRNGQH------LQTLTGHS-----SSVWGVAFSPD-GQTIASA 362 (577)
T ss_dssp ECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTSCE------EEEECCCS-----SCEEEEEECTT-SSEEEEE
T ss_pred EecCCCCeEEEEECCCC----CEEEEEeCCCeEEEEeCCCCe------eEEEeCCC-----CCEEEEEECCC-CCEEEEE
Confidence 56899999999999984 689999999999999976431 11222222 23568999995 5577877
Q ss_pred ecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 168 RSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 168 ~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+.|+.|++||... .+..+. .+...+..+. ++|++..|++++.|++|++||.. + +.+..+..+ ...|++
T Consensus 363 -~~dg~v~~~~~~~~~~~~~~--~~~~~v~~~~---~s~dg~~l~~~~~d~~v~~~~~~-~---~~~~~~~~~-~~~v~~ 431 (577)
T 2ymu_A 363 -SDDKTVKLWNRNGQLLQTLT--GHSSSVRGVA---FSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGH-SSSVWG 431 (577)
T ss_dssp -ETTSEEEEEETTCCEEEEEE--CCSSCEEEEE---ECTTSSCEEEEETTSEEEEECTT-C---CEEEEEECC-SSCEEE
T ss_pred -eCCCEEEEEcCCCCEEEEec--CCCCCeEEEE---ECCCCCEEEEEeCCCEEEEEeCC-C---CEEEEecCC-CCCeEE
Confidence 8999999999753 333332 2444454444 34567889999999999999953 4 567777766 689999
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD 325 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~ 325 (369)
++|+|++ +|++++.|++|++||. +++.+..+.+| ...|++++|+| ++++|++++.|++|++||. +++++..+.+|
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~-~~~v~~~~~sp-d~~~las~~~d~~i~iw~~-~~~~~~~~~~h 507 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGH 507 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECC-SSCEEEEEECT-TSCEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred EEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC-CCCEEEEEEcC-CCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC
Confidence 9999999 9999999999999995 57788899999 99999999999 9999999999999999995 67888999999
Q ss_pred CCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 326 SNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 326 ~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
... ..+..++|+++|++++.||.|++||. +++ .+..+.||.
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~-~~~~~~~h~ 549 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ-LLQTLTGHS 549 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSC-EEEEEECCS
T ss_pred CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCC-EEEEEcCCC
Confidence 732 23444779999999999999999996 443 456677764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=237.33 Aligned_cols=244 Identities=11% Similarity=0.076 Sum_probs=181.7
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..+|.+.|.+++|+|++ ...+++++.+|.|++||+.... ...+..+. .....+.+++|+|+ ...++++
T Consensus 114 ~~~h~~~v~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~ 181 (383)
T 3ei3_B 114 GMGPGDAITGMKFNQFN---TNQLFVSSIRGATTLRDFSGSV------IQVFAKTD--SWDYWYCCVDVSVS-RQMLATG 181 (383)
T ss_dssp CCSTTCBEEEEEEETTE---EEEEEEEETTTEEEEEETTSCE------EEEEECCC--CSSCCEEEEEEETT-TTEEEEE
T ss_pred cCCcCCceeEEEeCCCC---CCEEEEEeCCCEEEEEECCCCc------eEEEeccC--CCCCCeEEEEECCC-CCEEEEE
Confidence 45799999999999942 4799999999999999997421 11111111 11234678999995 4577877
Q ss_pred ecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCC-cEEEEEcCCeEEEEeCCcccC-CceeeeeeccCCCcE
Q 017601 168 RSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDLRMKEN-GGCLHRICGSVGDIL 244 (369)
Q Consensus 168 ~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~iwD~~~~~~-~~~~~~~~~~~~~~v 244 (369)
+.|+.|++||... .+..+ ..+...+..+.+. +++. .+++++.|++|++||+++.+. ..++..+.+. ..|
T Consensus 182 -~~d~~i~i~d~~~~~~~~~--~~h~~~v~~~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~v 253 (383)
T 3ei3_B 182 -DSTGRLLLLGLDGHEIFKE--KLHKAKVTHAEFN---PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHE--KPV 253 (383)
T ss_dssp -ETTSEEEEEETTSCEEEEE--ECSSSCEEEEEEC---SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECS--SCE
T ss_pred -CCCCCEEEEECCCCEEEEe--ccCCCcEEEEEEC---CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCC--Cce
Confidence 8999999999853 23332 2344555555543 4455 688889999999999998422 2566666544 899
Q ss_pred EEEEECC-CC-cEEEEeCCCcEEEEeCCCceeeeecccccc-----------------CceEEEEEcCCCCCEEEEEECC
Q 017601 245 YAVCSSS-TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSK-----------------YEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 245 ~~v~~sp-~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~-----------------~~v~~l~~sp~d~~~l~s~s~D 305 (369)
++++|+| ++ +|++++.|+.|++||+++++....+.+| . ..+..++|+| ++++ +++.|
T Consensus 254 ~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d 329 (383)
T 3ei3_B 254 NAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH-PHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDK 329 (383)
T ss_dssp EEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC-CBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCC
T ss_pred EEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc-cccccccccceEEeccCCCCceEEEecC-Cccc--ccCCC
Confidence 9999999 99 9999999999999999998887777655 3 3344567777 6666 77899
Q ss_pred CeEEEEECcCCceeEEEEcC--CCeeee-eEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 306 YEVFCGQWRESSKVFAFRGD--SNWLGF-SKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g~--~~~~~~-~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
++|++||+++++++..+.+| ...... ...+++.+|++|+ ||.|++||+++
T Consensus 330 ~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 330 RTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 99999999999999999874 322333 4567999999997 99999999875
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=240.19 Aligned_cols=254 Identities=13% Similarity=0.061 Sum_probs=191.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|++++|+|++ ..++++++.+|.|++|++..... ........| ...+.+++|+|.+...++++
T Consensus 69 ~~~h~~~v~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~h-----~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTH---PTTVAVGSKGGDIILWDYDVQNK---TSFIQGMGP-----GDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp ECCCSSCEEEEEECSSC---TTEEEEEEBTSCEEEEETTSTTC---EEEECCCST-----TCBEEEEEEETTEEEEEEEE
T ss_pred ccCCCCCEEEEEECCCC---CCEEEEEcCCCeEEEEeCCCccc---ceeeecCCc-----CCceeEEEeCCCCCCEEEEE
Confidence 56899999999999983 26999999999999999985521 111111122 23477899999666788888
Q ss_pred ecccceEEEEeCCc-ceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQDI-HLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|++|++||... ....+.... +...+..+.+ ++++..|++++.|++|++||++ + +++..+..+ ...|+
T Consensus 138 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d~~i~i~d~~-~---~~~~~~~~h-~~~v~ 208 (383)
T 3ei3_B 138 -SIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDV---SVSRQMLATGDSTGRLLLLGLD-G---HEIFKEKLH-KAKVT 208 (383)
T ss_dssp -ETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEE---ETTTTEEEEEETTSEEEEEETT-S---CEEEEEECS-SSCEE
T ss_pred -eCCCEEEEEECCCCceEEEeccCCCCCCeEEEEE---CCCCCEEEEECCCCCEEEEECC-C---CEEEEeccC-CCcEE
Confidence 8999999999864 223332211 1233444443 3467788999999999999994 4 677777766 68999
Q ss_pred EEEECCCC--cEEEEeCCCcEEEEeCCC----ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCcee
Q 017601 246 AVCSSSTG--NIAVAGADRTVTIYDPRR----WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKV 319 (369)
Q Consensus 246 ~v~~sp~g--~lasgs~D~~v~vwD~~~----~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~ 319 (369)
+++|+|++ +|++|+.|++|++||+++ +..+..+ +| ...|++++|+|.++++|++++.|+.|++||+++++..
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~-~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~ 286 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PH-EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP 286 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-EC-SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cC-CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 99999999 799999999999999998 5566666 68 8999999999988999999999999999999998887
Q ss_pred EEEEcCCCe------------------eeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhccc
Q 017601 320 FAFRGDSNW------------------LGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKG 366 (369)
Q Consensus 320 ~~~~g~~~~------------------~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g 366 (369)
..+.+|... ..+...+++.+ +|+.||.|++||+.+++. +..+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~-~~~l~~ 348 (383)
T 3ei3_B 287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL-VHQLRD 348 (383)
T ss_dssp SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE-EEEECB
T ss_pred cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce-eeeecC
Confidence 777765411 11222345555 778999999999998864 344443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=234.58 Aligned_cols=261 Identities=11% Similarity=0.039 Sum_probs=177.7
Q ss_pred cccCCccceeeEEEEeecC-----CCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC
Q 017601 86 LNRCPHRSEVQSIALAETD-----SSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ 160 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~-----~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 160 (369)
+.+.+|...|.+++++.+. .++...|+++..++++++|++......+... ...........+..+..++|+|++
T Consensus 67 ~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 67 FALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFL-TSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp EECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEE-EEECSSCCCCTTCCEEEEEECTTS
T ss_pred EEccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEe-eeeceeecCCcccCEEEEEEcCCC
Confidence 3466888999999886540 0001111223457789999987653211110 001111111112235679999965
Q ss_pred ceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee--eec
Q 017601 161 WSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR--ICG 238 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~--~~~ 238 (369)
..+++.+++.|++|+|||........ ...+...+..+. ++|++..+++++ ++.+.+|+..++ ..+.. ...
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~-~~~~~~~V~~v~---fspdg~~l~s~s-~~~~~~~~~~~~---~~~~~~~~~~ 217 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKF-EIETRGEVKDLH---FSTDGKVVAYIT-GSSLEVISTVTG---SCIARKTDFD 217 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEE-EEECSSCCCEEE---ECTTSSEEEEEC-SSCEEEEETTTC---CEEEEECCCC
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEE-EeCCCCceEEEE---EccCCceEEecc-ceeEEEEEeccC---cceeeeecCC
Confidence 54333333689999999987443322 223444444444 345665666665 556777777766 44332 223
Q ss_pred cCCCcEEEEEECCCC-cEEEEeCCC----cEEEEeCCCcee----eeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 239 SVGDILYAVCSSSTG-NIAVAGADR----TVTIYDPRRWSA----LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g-~lasgs~D~----~v~vwD~~~~~~----~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
+ ...|++++|+|++ .+++++.|+ ++++||+..... ...+.+| ...|++++||| |+++||+|+.|++|+
T Consensus 218 ~-~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~Sp-dg~~lasgs~D~~V~ 294 (365)
T 4h5i_A 218 K-NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR-FKGITSMDVDM-KGELAVLASNDNSIA 294 (365)
T ss_dssp T-TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS-CSCEEEEEECT-TSCEEEEEETTSCEE
T ss_pred C-CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC-CCCeEeEEECC-CCCceEEEcCCCEEE
Confidence 3 5789999999999 999998887 688999876543 3567788 89999999999 999999999999999
Q ss_pred EEECcCCceeEEE-EcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 310 CGQWRESSKVFAF-RGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 310 vwd~~~~~~~~~~-~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|||+++++++..+ .+|... ..+..+|||++|||||.|++|+|||+....
T Consensus 295 iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 295 LVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred EEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 9999999999886 688843 345558899999999999999999997543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=234.56 Aligned_cols=256 Identities=10% Similarity=0.109 Sum_probs=187.9
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC---ceeE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ---WSMA 164 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~---~~~~ 164 (369)
..+|.+.|++++|+|+..++...++++..++.|.+|++..... ...+..+........+.+++|+|+. ..++
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----IRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----EEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----EEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 3489999999999985211224455555566999999985421 1112222222234557899999963 3577
Q ss_pred EEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee---eccCC
Q 017601 165 AVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI---CGSVG 241 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~---~~~~~ 241 (369)
+++ +.|+.|++||............+...+..+.+.+. ++..|++++.|++|++||++++ +.+..+ ..+ .
T Consensus 89 ~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~-~ 161 (366)
T 3k26_A 89 AVA-GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR--DPNLLLSVSKDHALRLWNIQTD---TLVAIFGGVEGH-R 161 (366)
T ss_dssp EEE-ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS--CTTEEEEEETTSCEEEEETTTT---EEEEEECSTTSC-S
T ss_pred EEe-cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC--CCCEEEEEeCCCeEEEEEeecC---eEEEEecccccc-c
Confidence 777 89999999997633222222235555666554331 4568888999999999999988 677666 344 5
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccc----------------------------cccCceEEEEEc
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVH----------------------------CSKYEITGLSFS 292 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~----------------------------h~~~~v~~l~~s 292 (369)
..|++++|+|++ +|++|+.|+.|++||+++++....+.. | ...|.+++|+
T Consensus 162 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 240 (366)
T 3k26_A 162 DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH-RNYVDCVRWL 240 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC-SSCCCEEEEE
T ss_pred CceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC-cceEEEEEEc
Confidence 899999999999 999999999999999998776655544 8 8999999998
Q ss_pred CCCCCEEEEEECCCeEEEEECcCCce--------------eEEEEcCCCe-eeeeEcCC--CCEEEEEeCCCcEEEEECC
Q 017601 293 SIDSNYIYVQGVDYEVFCGQWRESSK--------------VFAFRGDSNW-LGFSKCSN--RDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 293 p~d~~~l~s~s~D~~i~vwd~~~~~~--------------~~~~~g~~~~-~~~~~~~d--~~~l~sgs~dg~I~iWd~~ 355 (369)
+ ++|++++.|+.|++||+++.+. +..+.+|... ..+..+++ +.+|++|+.||.|++||+.
T Consensus 241 ~---~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 241 G---DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp T---TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred C---CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 4 7999999999999999987543 7777777621 12222446 9999999999999999999
Q ss_pred CCcc
Q 017601 356 AKEN 359 (369)
Q Consensus 356 ~~~~ 359 (369)
+++.
T Consensus 318 ~~~~ 321 (366)
T 3k26_A 318 VEDP 321 (366)
T ss_dssp SSSG
T ss_pred CCCC
Confidence 8753
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=253.66 Aligned_cols=256 Identities=9% Similarity=-0.036 Sum_probs=181.3
Q ss_pred cCCccceeeEEEEeecCC--CCceEEEEEecCCcEEEEEecCCCCC------CccccccccCCCCCCCCCCeeEEEECCC
Q 017601 88 RCPHRSEVQSIALAETDS--SGYMVLGSVDSYGHLIVSKLDTSGKD------VDRLTYSVLPQDCGVGEGSWSGLCFSPS 159 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~--~~~~~las~d~~g~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 159 (369)
+..|.+.|++++|+|+.. ....+||+++.+|.|++||+...... .......+..| ...+.+++|+|.
T Consensus 203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h-----~~~v~sv~~s~~ 277 (524)
T 2j04_B 203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA-----DSLITTFDFLSP 277 (524)
T ss_dssp EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT-----TTCEEEEEESSS
T ss_pred EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC-----CCCEEEEEecCC
Confidence 456789999999999621 12468999999999999999754211 00001112222 245779999983
Q ss_pred CceeEEEEecccceEEEEeCCcceEEEE-eeeCCcceeeeccCCCCCCC-CcEEEEEcCCeEEEEeCCcccCCceeeeee
Q 017601 160 QWSMAAVARSFSKSIDVYDQDIHLRTLR-TLWYPSSLNFVQNLSPVNGG-PNMLAVTEGCQLTIWDLRMKENGGCLHRIC 237 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~lla~s~d~~v~iwD~~~~~~~~~~~~~~ 237 (369)
..|+++ +.|++|++||+........ ...|...+..+.. .+++++ ..|++++.|++|+|||++++ +++..+.
T Consensus 278 --~~lasg-s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~-~~s~~g~~~laS~S~D~tvklWD~~~~---~~~~~~~ 350 (524)
T 2j04_B 278 --TTVVCG-FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVST-AYSDFEDTVVSTVAVDGYFYIFNPKDI---ATTKTTV 350 (524)
T ss_dssp --SEEEEE-ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEE-ECCTTSCCEEEEEETTSEEEEECGGGH---HHHCEEE
T ss_pred --CeEEEE-eCCCEEEEEECCCCCCceEEeecccccEEEEEE-EcCCCCCeEEEEeccCCeEEEEECCCC---Ccccccc
Confidence 368887 9999999999863211111 2234455554420 122444 57888999999999999987 6666665
Q ss_pred ccCC-CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 238 GSVG-DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 238 ~~~~-~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
++.. ..|++++|+|++ .+++++.|++|++||++++.++.++.+| ...|++|+||| ++++|+|||.|++|++||+..
T Consensus 351 ~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH-~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 351 SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR-ETTITAIGVSR-LHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC-SSCEEEEECCS-SCCBCEEEETTTEEECCBSCS
T ss_pred cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC-CCceEEEEeCC-CCCeEEEEECCCEEEEEechH
Confidence 4411 358899999999 9999999999999999999988899999 99999999999 999999999999999998643
Q ss_pred C--------------------------------------------ceeEEEEcCCCe-eeeeEcCC---CCEEEEEeCCC
Q 017601 316 S--------------------------------------------SKVFAFRGDSNW-LGFSKCSN---RDVLGGWSDSG 347 (369)
Q Consensus 316 ~--------------------------------------------~~~~~~~g~~~~-~~~~~~~d---~~~l~sgs~dg 347 (369)
. .++..+.+|... ..+..+|+ +.+||+|+.||
T Consensus 429 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g 508 (524)
T 2j04_B 429 RLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG 508 (524)
T ss_dssp STTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTS
T ss_pred hhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCc
Confidence 1 011122233311 12233455 45999999999
Q ss_pred cEEEEECCCC
Q 017601 348 SIFVADVVAK 357 (369)
Q Consensus 348 ~I~iWd~~~~ 357 (369)
+|+||++...
T Consensus 509 ~vrlw~l~~~ 518 (524)
T 2j04_B 509 LLTLEYLSLE 518 (524)
T ss_dssp EEEEEECSCC
T ss_pred eEEEEEcccc
Confidence 9999998643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=228.80 Aligned_cols=258 Identities=14% Similarity=0.108 Sum_probs=200.6
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 163 (369)
..+.+.+|.+.|++++|+|++ ..+++++.+|.|++||+.+.. ....+..|. ..+.+++|+| +...
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~----~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~h~-----~~v~~~~~~~-~~~~ 88 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEG----DLLFSCSKDSSASVWYSLNGE-----RLGTLDGHT-----GTIWSIDVDC-FTKY 88 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTS----CEEEEEESSSCEEEEETTTCC-----EEEEECCCS-----SCEEEEEECT-TSSE
T ss_pred ccEEEEEeeceEEEEEEcCCC----CEEEEEeCCCEEEEEeCCCch-----hhhhhhhcC-----CcEEEEEEcC-CCCE
Confidence 445578999999999999984 689999999999999987541 112233332 3467899999 4557
Q ss_pred EEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcC-----CeEEEEeCCcccCCc-----
Q 017601 164 AAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEG-----CQLTIWDLRMKENGG----- 231 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d-----~~v~iwD~~~~~~~~----- 231 (369)
++++ +.|++|++||... .+..+. +...+..+.+ ++++..+++++.+ +.|++||++......
T Consensus 89 l~s~-~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~---~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 89 CVTG-SADYSIKLWDVSNGQCVATWK---SPVPVKRVEF---SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp EEEE-ETTTEEEEEETTTCCEEEEEE---CSSCEEEEEE---CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred EEEE-eCCCeEEEEECCCCcEEEEee---cCCCeEEEEE---ccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 7877 8999999999863 333332 4444444443 3457788888888 999999998763211
Q ss_pred ---eeeeeeccCCC--cEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 232 ---CLHRICGSVGD--ILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 232 ---~~~~~~~~~~~--~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
.+..+..+ .. .+.+++|+|++ .|++|+.|+.|++||+++ ++.+..+..| ...|.+++|+| ++++|++++.
T Consensus 162 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~ 238 (369)
T 3zwl_B 162 SEEPIHKIITH-EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISDMQFSP-DLTYFITSSR 238 (369)
T ss_dssp CSSCSEEEECC-TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-SSCEEEEEECT-TSSEEEEEET
T ss_pred ccceeeeccCC-cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-CCceeEEEECC-CCCEEEEecC
Confidence 22223322 23 89999999999 999999999999999999 7888999999 99999999999 9999999999
Q ss_pred CCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCC--------------cEEEEECCCCcchhhhcccC
Q 017601 305 DYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSG--------------SIFVADVVAKENEISALKGL 367 (369)
Q Consensus 305 D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg--------------~I~iWd~~~~~~~~~~l~g~ 367 (369)
|+.|++||+++++.+..+........+...+++.++++++.++ .+++||..+++. +..+.+|
T Consensus 239 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~ 314 (369)
T 3zwl_B 239 DTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE-IGRVQGH 314 (369)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE-EEEEECC
T ss_pred CceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc-hhheecc
Confidence 9999999999999999988665445556677999999999998 899999988763 3344444
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=239.80 Aligned_cols=257 Identities=16% Similarity=0.111 Sum_probs=190.3
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|.+++|+|++ ..+++++.+|.|++|++..... ........+ ...+.+++|+|+ ..+++++
T Consensus 48 ~~~h~~~v~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~ 114 (372)
T 1k8k_C 48 LKEHNGQVTGVDWAPDS----NRIVTCGTDRNAYVWTLKGRTW---KPTLVILRI-----NRAARCVRWAPN-EKKFAVG 114 (372)
T ss_dssp EECCSSCEEEEEEETTT----TEEEEEETTSCEEEEEEETTEE---EEEEECCCC-----SSCEEEEEECTT-SSEEEEE
T ss_pred ecCCCCcccEEEEeCCC----CEEEEEcCCCeEEEEECCCCee---eeeEEeecC-----CCceeEEEECCC-CCEEEEE
Confidence 45799999999999974 6889999999999999975410 001111222 234678999995 5677887
Q ss_pred ecccceEEEEeCCcc--eEEEEee--eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc---------------c
Q 017601 168 RSFSKSIDVYDQDIH--LRTLRTL--WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK---------------E 228 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~--~~~~~~~--~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~---------------~ 228 (369)
+.|+.|++||.... ....... .+...+..+.+ .+++..|++++.|+.|++||++.. .
T Consensus 115 -~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (372)
T 1k8k_C 115 -SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW---HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 190 (372)
T ss_dssp -ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE---CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred -eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE---cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccc
Confidence 89999999987532 1112221 23444555553 345678888999999999996521 1
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
..+++..+..+ ...|++++|+|++ +|++++.|+.|++||+++++++..+..| ...|++++|+| ++.+|+++ .|+.
T Consensus 191 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~l~~~-~d~~ 266 (372)
T 1k8k_C 191 FGELMFESSSS-CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFIT-ESSLVAAG-HDCF 266 (372)
T ss_dssp TTCEEEECCCC-SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEE-TTEEEEEE-TTSS
T ss_pred hhhheEecCCC-CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEec-CCCEEEEE-eCCe
Confidence 12667777655 5889999999999 9999999999999999999999999999 89999999999 99888777 9999
Q ss_pred EEEEECcC--Cce--------------------------------e------EEE-EcCCCee-eeeEc-CCC---CEEE
Q 017601 308 VFCGQWRE--SSK--------------------------------V------FAF-RGDSNWL-GFSKC-SNR---DVLG 341 (369)
Q Consensus 308 i~vwd~~~--~~~--------------------------------~------~~~-~g~~~~~-~~~~~-~d~---~~l~ 341 (369)
|++||++. +.. . ..+ .+|.... .+... ++| .+|+
T Consensus 267 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~ 346 (372)
T 1k8k_C 267 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 346 (372)
T ss_dssp CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEE
Confidence 99999987 321 0 222 3776322 23223 476 9999
Q ss_pred EEeCCCcEEEEECCCCcchhhhcc
Q 017601 342 GWSDSGSIFVADVVAKENEISALK 365 (369)
Q Consensus 342 sgs~dg~I~iWd~~~~~~~~~~l~ 365 (369)
+|+.||.|++||+.+++..+..++
T Consensus 347 s~~~Dg~i~~W~~~~~~~~~~~~~ 370 (372)
T 1k8k_C 347 TTGMDGGMSIWDVRSLESALKDLK 370 (372)
T ss_dssp EEETTSEEEEEEHHHHHHHCTTCC
T ss_pred EecCCCceEEEEecChhHhhhhcc
Confidence 999999999999998876555543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-28 Score=226.78 Aligned_cols=280 Identities=10% Similarity=-0.005 Sum_probs=204.7
Q ss_pred eEEEEEEeCCchhh-hcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCC
Q 017601 52 HLYKLQVMMDDWFV-SEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGK 130 (369)
Q Consensus 52 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~ 130 (369)
.|..+++...+..+ ..+.++.+..++..... ....+.+|.+.|.+++|+|++ ..+++++.+|.|++||+.+...
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-RLGTLDGHTGTIWSIDVDCFT----KYCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTS----SEEEEEETTTEEEEEETTTCCE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-hhhhhhhcCCcEEEEEEcCCC----CEEEEEeCCCeEEEEECCCCcE
Confidence 34445555555444 33334433333332222 222356899999999999974 6889999999999999975521
Q ss_pred CCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc-----ceEEEEeCCcc--e-----------EEEEeeeCC
Q 017601 131 DVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS-----KSIDVYDQDIH--L-----------RTLRTLWYP 192 (369)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d-----~~i~lwd~~~~--~-----------~~~~~~~~~ 192 (369)
...+. + ...+.+++|+|++ ..++++ +.+ +.|.+||.... . ..+......
T Consensus 109 -----~~~~~-~-----~~~v~~~~~~~~~-~~l~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 109 -----VATWK-S-----PVPVKRVEFSPCG-NYFLAI-LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp -----EEEEE-C-----SSCEEEEEECTTS-SEEEEE-ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred -----EEEee-c-----CCCeEEEEEccCC-CEEEEe-cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 11111 1 2236689999954 466666 666 99999986421 1 111111111
Q ss_pred cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC
Q 017601 193 SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR 271 (369)
Q Consensus 193 ~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~ 271 (369)
..+..+.+ ++++..+++++.|+.|++||+++.. ..+..+..+ ...|.+++|+|++ +|++++.|+.|++||+++
T Consensus 176 ~~~~~~~~---~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 176 DAATVAGW---STKGKYIIAGHKDGKISKYDVSNNY--EYVDSIDLH-EKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp CCEEEEEE---CGGGCEEEEEETTSEEEEEETTTTT--EEEEEEECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred cceeEEEE---cCCCCEEEEEcCCCEEEEEECCCCc--EeEEEEecC-CCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence 13333332 3456788889999999999999831 667777765 6899999999999 999999999999999999
Q ss_pred ceeeeeccccccCceEEEEEcCCCCCEEEEEECCC--------------eEEEEECcCCceeEEEEcCCCe-eeeeEcCC
Q 017601 272 WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY--------------EVFCGQWRESSKVFAFRGDSNW-LGFSKCSN 336 (369)
Q Consensus 272 ~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~--------------~i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d 336 (369)
++.+..+. + ...+..+.|+| +++++++++.++ .+++||..+++.+..+.+|... ..+..+++
T Consensus 250 ~~~~~~~~-~-~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~ 326 (369)
T 3zwl_B 250 LQVLKKYE-T-DCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQ 326 (369)
T ss_dssp CCEEEEEE-C-SSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred Cceeeeec-C-CCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCC
Confidence 99888887 5 68999999999 999999999998 8999999999999999998732 23444779
Q ss_pred CCEEEEEeCCCcEEEEECCCCc
Q 017601 337 RDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 337 ~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+.+|++++.||.|++|+++++.
T Consensus 327 ~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 327 GTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp SSEEEEEETTSEEEEEEECHHH
T ss_pred CCEEEEEcCCCeEEEEECcccc
Confidence 9999999999999999998753
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=241.67 Aligned_cols=244 Identities=9% Similarity=0.040 Sum_probs=181.0
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.|.+.|++++|+|++ .++++++.+|.|++|++..... .....+..| ...+.+++|+|+ ..+++++ +
T Consensus 9 ~~~~~v~~~~~s~~g----~~l~~~~~d~~i~iw~~~~~~~---~~~~~~~~h-----~~~v~~~~~s~~-~~~l~s~-s 74 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQR----TEFVTTTATNQVELYEQDGNGW---KHARTFSDH-----DKIVTCVDWAPK-SNRIVTC-S 74 (377)
T ss_dssp ECSSCCSCCEECSSS----SEEECCCSSSCBCEEEEETTEE---EECCCBCCC-----SSCEEEEEECTT-TCCEEEE-E
T ss_pred cCCCcEEEEEECCCC----CEEEEecCCCEEEEEEccCCce---EEEEEEecC-----CceEEEEEEeCC-CCEEEEE-e
Confidence 366899999999984 6899999999999999985410 011122222 234678999995 5678888 8
Q ss_pred ccceEEEEeCCcce---EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec-cCCCcEE
Q 017601 170 FSKSIDVYDQDIHL---RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG-SVGDILY 245 (369)
Q Consensus 170 ~d~~i~lwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~-~~~~~v~ 245 (369)
.|++|++||..... .......+...+..+.+ ++++..|++++.|++|++||+++++.......+.. + ...|+
T Consensus 75 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h-~~~v~ 150 (377)
T 3dwl_C 75 QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRW---SPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL-RSTIL 150 (377)
T ss_dssp TTSSEEEC------CCCCEEECCCCSSCEEEEEC---CTTSSCCEEEESSSCEEECCC-----CCCCEEECSSC-CSCEE
T ss_pred CCCeEEEEEcCCCCceeeeeEecccCCceEEEEE---CCCCCEEEEEecCCeEEEEEECCcccceeeeEeeccc-CCCeE
Confidence 99999999986432 22223335556666664 34677899999999999999998732224666765 4 68999
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCC------------------CceeeeeccccccCceEEEEEcCCCCCEEEEEECCC
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPR------------------RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY 306 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~------------------~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~ 306 (369)
+++|+|++ +|++|+.|++|++||++ .++++..+ +| ...|++++|+| ++++|++++.|+
T Consensus 151 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~sp-~~~~l~~~~~d~ 227 (377)
T 3dwl_C 151 SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS-GGWVHAVGFSP-SGNALAYAGHDS 227 (377)
T ss_dssp EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC-SSSEEEEEECT-TSSCEEEEETTT
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC-CceEEEEEECC-CCCEEEEEeCCC
Confidence 99999999 99999999999999985 35667777 88 99999999999 999999999999
Q ss_pred eEEEEECcCCce----eEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 307 EVFCGQWRESSK----VFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 307 ~i~vwd~~~~~~----~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+|++||+++++. +..+.+|... ..+...+++.+|++|+.|+.+ +|+..
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 228 SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999999999877 7888888732 344446799999999877777 56554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=234.66 Aligned_cols=250 Identities=12% Similarity=0.075 Sum_probs=186.3
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC-ceeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ-WSMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~~a~ 166 (369)
+.+|.+.|.+++|+|++ ..+++++.+|.|++|++..... .....+..|. ..+.+++|+|.. ..++++
T Consensus 7 ~~~h~~~v~~~~~s~~~----~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s 74 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYG----KRLATCSSDKTIKIFEVEGETH---KLIDTLTGHE-----GPVWRVDWAHPKFGTILAS 74 (379)
T ss_dssp EEECCCCEEEEEECSSS----SEEEEEETTSCEEEEEEETTEE---EEEEEECCCS-----SCEEEEEECCGGGCSEEEE
T ss_pred ecCCcccEEEEEEcCCC----CEEEEEECCCcEEEEecCCCcc---eeeeEecCCC-----CcEEEEEeCCCCCCCEEEE
Confidence 56899999999999984 6899999999999999974311 1112233332 346789998742 567787
Q ss_pred EecccceEEEEeCCcce--EEEEeeeCCcceeeeccCCCCCC--CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 167 ARSFSKSIDVYDQDIHL--RTLRTLWYPSSLNFVQNLSPVNG--GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~--~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
+ +.|+.|++||..... .......+...+..+.+. ++ +..+++++.|++|++||+++.... ....+..+ ..
T Consensus 75 ~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~-~~ 148 (379)
T 3jrp_A 75 C-SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA---PHEYGPLLLVASSDGKVSVVEFKENGTT-SPIIIDAH-AI 148 (379)
T ss_dssp E-ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC---CGGGCSEEEEEETTSEEEEEECCTTSCC-CEEEEECC-TT
T ss_pred e-ccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC---CCCCCCEEEEecCCCcEEEEecCCCCce-eeEEecCC-CC
Confidence 7 899999999975432 222222244555555543 34 568889999999999999977322 22334444 58
Q ss_pred cEEEEEECC-------------CC-cEEEEeCCCcEEEEeCCCce----eeeeccccccCceEEEEEcCCC---CCEEEE
Q 017601 243 ILYAVCSSS-------------TG-NIAVAGADRTVTIYDPRRWS----ALSRWVHCSKYEITGLSFSSID---SNYIYV 301 (369)
Q Consensus 243 ~v~~v~~sp-------------~g-~lasgs~D~~v~vwD~~~~~----~~~~~~~h~~~~v~~l~~sp~d---~~~l~s 301 (369)
.|++++|+| ++ .|++|+.|+.|++||++++. ....+.+| ...|++++|+| + +++|++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h-~~~v~~~~~sp-~~~~~~~l~s 226 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSP-TVLLRSYLAS 226 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECC-CCSSSEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc-cCcEeEEEECC-CCCCCCeEEE
Confidence 999999999 57 99999999999999998753 55678899 99999999999 8 899999
Q ss_pred EECCCeEEEEECcCCc---eeEEEE--cCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 302 QGVDYEVFCGQWRESS---KVFAFR--GDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 302 ~s~D~~i~vwd~~~~~---~~~~~~--g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
++.|+.|++||++++. ....+. .|. ....+...+++.+|++++.||.|++|++..+
T Consensus 227 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 227 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9999999999998863 222222 243 1234445779999999999999999999754
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=238.74 Aligned_cols=249 Identities=11% Similarity=0.083 Sum_probs=187.5
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
..+++++|+|++ ..+++++.+|.+++|++.+... ...+..+ ......+|+| ++.+++++ +.|+
T Consensus 57 ~~~~~~~~s~~g----~~l~~~~~d~~v~i~d~~~~~~-----~~~~~~~------~~~~~~~~~~-~~~~l~~~-~~dg 119 (420)
T 3vl1_A 57 DAGKGNTFEKVG----SHLYKARLDGHDFLFNTIIRDG-----SKMLKRA------DYTAVDTAKL-QMRRFILG-TTEG 119 (420)
T ss_dssp BCCTTCEEEEEE----TTEEEEEETTEEEEEECCSEET-----TTTSCSC------CEEEEEEECS-SSCEEEEE-ETTS
T ss_pred ccccceeeeecC----CeEEEEEcCCcEEEEEecccce-----eeEEecC------CceEEEEEec-CCCEEEEE-ECCC
Confidence 445689999984 6788888899999999875421 1111111 1133456788 55678888 8999
Q ss_pred eEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCC
Q 017601 173 SIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSST 252 (369)
Q Consensus 173 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 252 (369)
.|++||............|...+..+.+ +|++..|++++.|++|++||++++ +.+..+..+ ...|++++|+|+
T Consensus 120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h-~~~v~~~~~~~~ 192 (420)
T 3vl1_A 120 DIKVLDSNFNLQREIDQAHVSEITKLKF---FPSGEALISSSQDMQLKIWSVKDG---SNPRTLIGH-RATVTDIAIIDR 192 (420)
T ss_dssp CEEEECTTSCEEEEETTSSSSCEEEEEE---CTTSSEEEEEETTSEEEEEETTTC---CCCEEEECC-SSCEEEEEEETT
T ss_pred CEEEEeCCCcceeeecccccCccEEEEE---CCCCCEEEEEeCCCeEEEEeCCCC---cCceEEcCC-CCcEEEEEEcCC
Confidence 9999998643322222235556666654 345678999999999999999988 677778766 689999999999
Q ss_pred C-cEEEEeCCCcEEEEeCCCceeeeeccccc--cCc---------------------eEEEEEcCCCCCEEEEEECCCeE
Q 017601 253 G-NIAVAGADRTVTIYDPRRWSALSRWVHCS--KYE---------------------ITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 253 g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~--~~~---------------------v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
+ +|++|+.|++|++||+++++.+..+..|. ... +.+++|+| ++++|++++.|+.|
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 271 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVI 271 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCE
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeE
Confidence 9 99999999999999999999988887530 334 44455678 99999999999999
Q ss_pred EEEECcCCceeEEEEc-CCC-eeeeeEcCCCC-EEEEEeCCCcEEEEECCCCcchhhhccc
Q 017601 309 FCGQWRESSKVFAFRG-DSN-WLGFSKCSNRD-VLGGWSDSGSIFVADVVAKENEISALKG 366 (369)
Q Consensus 309 ~vwd~~~~~~~~~~~g-~~~-~~~~~~~~d~~-~l~sgs~dg~I~iWd~~~~~~~~~~l~g 366 (369)
++||+++++....+.. |.. ...+...+++. +|++|+.||.|++||+++++..+..+.+
T Consensus 272 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 332 (420)
T 3vl1_A 272 TVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI 332 (420)
T ss_dssp EEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE
T ss_pred EEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc
Confidence 9999999887777753 542 23445567877 9999999999999999988655555544
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-28 Score=221.15 Aligned_cols=244 Identities=12% Similarity=0.088 Sum_probs=188.3
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
...|.+.|.+++|+|++ ..+++++.+|.+.+|++........ ...+..| ...+.+++|+ +..++++
T Consensus 55 ~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~~~~~~~~~~~~~--~~~~~~~-----~~~i~~~~~~---~~~l~~~ 120 (313)
T 3odt_A 55 VYTGQGFLNSVCYDSEK----ELLLFGGKDTMINGVPLFATSGEDP--LYTLIGH-----QGNVCSLSFQ---DGVVISG 120 (313)
T ss_dssp EEECSSCEEEEEEETTT----TEEEEEETTSCEEEEETTCCTTSCC---CEECCC-----SSCEEEEEEE---TTEEEEE
T ss_pred eecCCccEEEEEECCCC----CEEEEecCCCeEEEEEeeecCCCCc--ccchhhc-----ccCEEEEEec---CCEEEEE
Confidence 45789999999999984 6899999999999999875421111 1222222 2346688883 3477777
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
+.|+.|++||.......+.. +...+..+.+.+ +++..+++++.|+.|++||.. +.+..+.......+.++
T Consensus 121 -~~d~~i~~~d~~~~~~~~~~--~~~~v~~~~~~~--~~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~~~~~i~~~ 190 (313)
T 3odt_A 121 -SWDKTAKVWKEGSLVYNLQA--HNASVWDAKVVS--FSENKFLTASADKTIKLWQND-----KVIKTFSGIHNDVVRHL 190 (313)
T ss_dssp -ETTSEEEEEETTEEEEEEEC--CSSCEEEEEEEE--TTTTEEEEEETTSCEEEEETT-----EEEEEECSSCSSCEEEE
T ss_pred -eCCCCEEEEcCCcEEEeccc--CCCceeEEEEcc--CCCCEEEEEECCCCEEEEecC-----ceEEEEeccCcccEEEE
Confidence 89999999996555554433 333333333222 246789999999999999943 45555554225899999
Q ss_pred EECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCC
Q 017601 248 CSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSN 327 (369)
Q Consensus 248 ~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~ 327 (369)
+|+|++.+++++.|+.|++||+++++++..+.+| ...|++++|+| ++ .|++++.|+.|++||++++++...+.+|..
T Consensus 191 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 267 (313)
T 3odt_A 191 AVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGH-ESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI 267 (313)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSS
T ss_pred EEcCCCeEEEccCCCeEEEEECCchhhhhhhhcC-CceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCc
Confidence 9999999999999999999999999999999999 99999999999 88 588999999999999999999999998872
Q ss_pred -eeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 328 -WLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 328 -~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
...+...+++. +++++.||.|++||+++++.
T Consensus 268 ~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 268 SIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp CEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred eEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 23444466877 66799999999999988753
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=236.66 Aligned_cols=238 Identities=9% Similarity=0.025 Sum_probs=189.0
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
+|.+.|.+++|+|++ .++++++.+|.|++|+.... ....+..|. ..+.+++|+|+ ...++++ +
T Consensus 106 ~~~~~v~~~~~s~~~----~~l~~~~~dg~i~i~~~~~~------~~~~~~~~~-----~~v~~~~~~~~-~~~l~~~-~ 168 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDG----NSIVTGVENGELRLWNKTGA------LLNVLNFHR-----APIVSVKWNKD-GTHIISM-D 168 (425)
T ss_dssp --CBCEEEEEECTTS----SEEEEEETTSCEEEEETTSC------EEEEECCCC-----SCEEEEEECTT-SSEEEEE-E
T ss_pred CCCCceEEEEEcCCC----CEEEEEeCCCeEEEEeCCCC------eeeeccCCC-----ccEEEEEECCC-CCEEEEE-e
Confidence 478899999999984 68999999999999993311 112222222 34678999995 4567777 8
Q ss_pred ccceEEEEeCCc--ceEEEEeeeC----------------CcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc
Q 017601 170 FSKSIDVYDQDI--HLRTLRTLWY----------------PSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG 231 (369)
Q Consensus 170 ~d~~i~lwd~~~--~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~ 231 (369)
.|+.|++||... ....+..... ...+.+. + ++.+++++.|+.|++||++++ +
T Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~g~i~~~d~~~~---~ 238 (425)
T 1r5m_A 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV------D-DDKFVIPGPKGAIFVYQITEK---T 238 (425)
T ss_dssp TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE------E-TTEEEEECGGGCEEEEETTCS---S
T ss_pred cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc------C-CCEEEEEcCCCeEEEEEcCCC---c
Confidence 899999999853 3333322111 2233333 2 467899999999999999987 6
Q ss_pred eeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 232 CLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 232 ~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
.+..+..+ ...|++++|+|++ +|++++.|+.|++||+++++.+..+.+| ...|.+++|+| ++ ++++++.|+.|++
T Consensus 239 ~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~-~~-~l~~~~~d~~i~i 314 (425)
T 1r5m_A 239 PTGKLIGH-HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-SQSIVSASWVG-DD-KVISCSMDGSVRL 314 (425)
T ss_dssp CSEEECCC-SSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-SSCEEEEEEET-TT-EEEEEETTSEEEE
T ss_pred eeeeeccC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-CccEEEEEECC-CC-EEEEEeCCCcEEE
Confidence 77777655 6899999999999 9999999999999999999999999999 99999999999 88 9999999999999
Q ss_pred EECcCCceeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 311 GQWRESSKVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 311 wd~~~~~~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
||+++++.+..+.+|.. ...+...+++.+|++++.||.|++||+.+++
T Consensus 315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99999999999988762 2344446799999999999999999998765
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-29 Score=232.18 Aligned_cols=246 Identities=9% Similarity=0.014 Sum_probs=191.3
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.|.+.|.+++|+|++ .++++++.+|.|++|++..... .....+..|. ..+.+++|+| +..+++++ +
T Consensus 6 ~~~~~i~~~~~s~~~----~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~h~-----~~v~~~~~~~-~~~~l~~~-~ 71 (372)
T 1k8k_C 6 FLVEPISCHAWNKDR----TQIAICPNNHEVHIYEKSGNKW---VQVHELKEHN-----GQVTGVDWAP-DSNRIVTC-G 71 (372)
T ss_dssp SCSSCCCEEEECTTS----SEEEEECSSSEEEEEEEETTEE---EEEEEEECCS-----SCEEEEEEET-TTTEEEEE-E
T ss_pred ccCCCeEEEEECCCC----CEEEEEeCCCEEEEEeCCCCcE---EeeeeecCCC-----CcccEEEEeC-CCCEEEEE-c
Confidence 488999999999984 6899999999999999985410 0112222332 3467899999 45577877 8
Q ss_pred ccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee-ccCCCcEEE
Q 017601 170 FSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC-GSVGDILYA 246 (369)
Q Consensus 170 ~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~-~~~~~~v~~ 246 (369)
.|+.|++||.... ...+....+...+..+.+ ++++..|++++.|+.|++||++.+........+. .+ ...|++
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~-~~~i~~ 147 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRW---APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI-RSTVLS 147 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEE---CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC-CSCEEE
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEE---CCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeeccc-CCCeeE
Confidence 9999999997532 223333334455555553 3457788889999999999998873211233333 33 588999
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCC------------------CceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPR------------------RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~------------------~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
++|+|++ +|++|+.|+.|++||++ .++.+..+.+| ...|++++|+| ++++|++++.|+.
T Consensus 148 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~d~~ 225 (372)
T 1k8k_C 148 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-CGWVHGVCFSA-NGSRVAWVSHDST 225 (372)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-SSCEEEEEECS-SSSEEEEEETTTE
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC-CCeEEEEEECC-CCCEEEEEeCCCE
Confidence 9999999 99999999999999954 67888899999 99999999999 9999999999999
Q ss_pred EEEEECcCCceeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 308 VFCGQWRESSKVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
|++||+++++++..+.+|.. ...+...+++.+|++| .|+.|++|++.+
T Consensus 226 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 226 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999999999999998872 2334446688888888 999999999987
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=239.24 Aligned_cols=239 Identities=11% Similarity=0.028 Sum_probs=178.7
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
..+....|++++ ..+++++.+|.|++||+.... ....+..|. ..+.+++|+|+ ..+++++ +.|+
T Consensus 98 ~~~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~-----~~v~~~~~~~~-~~~l~s~-s~d~ 161 (420)
T 3vl1_A 98 DYTAVDTAKLQM----RRFILGTTEGDIKVLDSNFNL-----QREIDQAHV-----SEITKLKFFPS-GEALISS-SQDM 161 (420)
T ss_dssp CEEEEEEECSSS----CEEEEEETTSCEEEECTTSCE-----EEEETTSSS-----SCEEEEEECTT-SSEEEEE-ETTS
T ss_pred CceEEEEEecCC----CEEEEEECCCCEEEEeCCCcc-----eeeeccccc-----CccEEEEECCC-CCEEEEE-eCCC
Confidence 444455677773 689999999999999987441 111222332 34679999995 5577887 8999
Q ss_pred eEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC--CCcEE---
Q 017601 173 SIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV--GDILY--- 245 (369)
Q Consensus 173 ~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~--~~~v~--- 245 (369)
+|++||... .++.+. .|...+..+.+ +|++..|++++.|++|++||++++ +++..+..+. ...|.
T Consensus 162 ~i~iwd~~~~~~~~~~~--~h~~~v~~~~~---~~~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~~~~v~~~~ 233 (420)
T 3vl1_A 162 QLKIWSVKDGSNPRTLI--GHRATVTDIAI---IDRGRNVLSASLDGTIRLWECGTG---TTIHTFNRKENPHDGVNSIA 233 (420)
T ss_dssp EEEEEETTTCCCCEEEE--CCSSCEEEEEE---ETTTTEEEEEETTSCEEEEETTTT---EEEEEECBTTBTTCCEEEEE
T ss_pred eEEEEeCCCCcCceEEc--CCCCcEEEEEE---cCCCCEEEEEcCCCcEEEeECCCC---ceeEEeecCCCCCCCccEEE
Confidence 999999863 344432 34444544443 245778999999999999999988 6777665321 23444
Q ss_pred ------------------EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCC-EEEEEEC
Q 017601 246 ------------------AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSN-YIYVQGV 304 (369)
Q Consensus 246 ------------------~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~-~l~s~s~ 304 (369)
+++|+|++ +|++|+.|+.|++||+++++.+..+. +| ...|++++|+| ++. +|++++.
T Consensus 234 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~~l~~g~~ 311 (420)
T 3vl1_A 234 LFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF-TCSCNSLTVDG-NNANYIYAGYE 311 (420)
T ss_dssp EEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTT-SSCEEEEEECS-SCTTEEEEEET
T ss_pred EecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccccc-CCCceeEEEeC-CCCCEEEEEeC
Confidence 45568999 99999999999999999988877665 46 89999999999 888 9999999
Q ss_pred CCeEEEEECcCCc-eeEEEEc-CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 305 DYEVFCGQWRESS-KVFAFRG-DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 305 D~~i~vwd~~~~~-~~~~~~g-~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
|+.|++||+++++ .+..+.+ |.........+++.+|++++.||.|++|++...
T Consensus 312 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 312 NGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred CCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 9999999999864 4777776 442222233458889999999999999998874
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-29 Score=235.23 Aligned_cols=279 Identities=11% Similarity=0.020 Sum_probs=205.2
Q ss_pred eEEEEEEeCCchhh-hcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCC
Q 017601 52 HLYKLQVMMDDWFV-SEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGK 130 (369)
Q Consensus 52 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~ 130 (369)
.|..+++...+..+ ..+.++.+..++ .... ....+..|.+.|.+++|+|++ ..+++++.+|.+++|++..+..
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~-~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGA-LLNVLNFHRAPIVSVKWNKDG----THIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSC-EEEEECCCCSCEEEEEECTTS----SEEEEEETTCCEEEEETTTTEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCC-eeeeccCCCccEEEEEECCCC----CEEEEEecCCeEEEEECCCCcE
Confidence 56666666555544 223343332222 1111 222356799999999999984 6888999999999999975421
Q ss_pred CCccccccccCCCCC----------CCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcc--eEEEEeeeCCcceeee
Q 017601 131 DVDRLTYSVLPQDCG----------VGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFV 198 (369)
Q Consensus 131 ~~~~~~~~~~~~~~~----------~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~ 198 (369)
...+..+... .....+.+++|+|+ ..++++ +.++.|++||.... ...+. .+...+..+
T Consensus 184 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~g~i~~~d~~~~~~~~~~~--~~~~~i~~~ 253 (425)
T 1r5m_A 184 -----MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIP-GPKGAIFVYQITEKTPTGKLI--GHHGPISVL 253 (425)
T ss_dssp -----EEEECCC---------------CCCBSCCEEEET--TEEEEE-CGGGCEEEEETTCSSCSEEEC--CCSSCEEEE
T ss_pred -----EEEeeccccCccceeeccccCCcceeeEEEEcCC--CEEEEE-cCCCeEEEEEcCCCceeeeec--cCCCceEEE
Confidence 1111111110 00001457899884 356777 88999999998642 22222 234444444
Q ss_pred ccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeec
Q 017601 199 QNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRW 278 (369)
Q Consensus 199 ~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~ 278 (369)
.+ ++++..|++++.|+.|++||++++ +.+..+..+ ...|.+++|+|++.+++++.|+.|++||+++++.+..+
T Consensus 254 ~~---~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~-~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 326 (425)
T 1r5m_A 254 EF---NDTNKLLLSASDDGTLRIWHGGNG---NSQNCFYGH-SQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALS 326 (425)
T ss_dssp EE---ETTTTEEEEEETTSCEEEECSSSB---SCSEEECCC-SSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EE---CCCCCEEEEEcCCCEEEEEECCCC---ccceEecCC-CccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEec
Confidence 43 245678888999999999999987 677777655 58999999999999999999999999999999999999
Q ss_pred cccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc--------------------eeEEEEcCC---CeeeeeEcC
Q 017601 279 VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS--------------------KVFAFRGDS---NWLGFSKCS 335 (369)
Q Consensus 279 ~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~--------------------~~~~~~g~~---~~~~~~~~~ 335 (369)
..| ...|++++|+| ++++|++++.|+.|++||+++++ ++..+.+|. ....+..++
T Consensus 327 ~~~-~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 404 (425)
T 1r5m_A 327 IVD-GVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC 404 (425)
T ss_dssp ECT-TCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT
T ss_pred ccC-CccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC
Confidence 999 99999999999 99999999999999999999877 889998884 334455577
Q ss_pred CCCEEEEEeCCCcEEEEECC
Q 017601 336 NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 336 d~~~l~sgs~dg~I~iWd~~ 355 (369)
++.+|++++.||.|++||++
T Consensus 405 ~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 405 AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TSSEEEEEESSSCCEEEECC
T ss_pred CCceEEEEecCceEEEEeec
Confidence 99999999999999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=232.81 Aligned_cols=244 Identities=13% Similarity=0.075 Sum_probs=186.9
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
...|.+.|.+++|+|++ ..+++++.+|.|.+||+.+.. ....+..|. ..+.+++|++ ..++++
T Consensus 130 ~~~~~~~v~~v~~s~~~----~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~-----~~v~~~~~~~---~~l~~~ 192 (401)
T 4aez_A 130 ETDESTYVASVKWSHDG----SFLSVGLGNGLVDIYDVESQT-----KLRTMAGHQ-----ARVGCLSWNR---HVLSSG 192 (401)
T ss_dssp ECCTTCCEEEEEECTTS----SEEEEEETTSCEEEEETTTCC-----EEEEECCCS-----SCEEEEEEET---TEEEEE
T ss_pred ecCCCCCEEEEEECCCC----CEEEEECCCCeEEEEECcCCe-----EEEEecCCC-----CceEEEEECC---CEEEEE
Confidence 44589999999999974 689999999999999987552 112222332 3466889954 477777
Q ss_pred ecccceEEEEeCCcceEEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+.|+.|++||......... ...+...+..+.+. +++..|++++.|++|++||++++ .++..+..+ ...|.+
T Consensus 193 -~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~-~~~v~~ 264 (401)
T 4aez_A 193 -SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR---SDGLQLASGGNDNVVQIWDARSS---IPKFTKTNH-NAAVKA 264 (401)
T ss_dssp -ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTCS---SEEEEECCC-SSCCCE
T ss_pred -cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc---CCCCEEEEEeCCCeEEEccCCCC---CccEEecCC-cceEEE
Confidence 8999999999863222222 22345555555543 45678999999999999999987 777777655 689999
Q ss_pred EEECCCC--cEEEEe--CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE--CCCeEEEEECcCCceeE
Q 017601 247 VCSSSTG--NIAVAG--ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG--VDYEVFCGQWRESSKVF 320 (369)
Q Consensus 247 v~~sp~g--~lasgs--~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s--~D~~i~vwd~~~~~~~~ 320 (369)
++|+|++ ++++|+ .|+.|++||+++++++..+. | ...|++++|+| ++.++++++ .|+.|++||+.+++...
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~-~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~ 341 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-A-GSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTK 341 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-C-SSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-C-CCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCcccee
Confidence 9999988 666765 79999999999999988886 4 57899999999 999999954 89999999999865544
Q ss_pred E--EEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 321 A--FRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 321 ~--~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
. +.+|.. ...+...+++.+|++++.||.|++||+.+++.
T Consensus 342 ~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 342 QVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp EEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 4 567762 23344577999999999999999999998864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=249.20 Aligned_cols=252 Identities=12% Similarity=0.034 Sum_probs=181.0
Q ss_pred CccceeeEEEEeecCCCC-----ceEEEE-------------------EecCCcEEEEEecCCCCCCccccccccCCCCC
Q 017601 90 PHRSEVQSIALAETDSSG-----YMVLGS-------------------VDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCG 145 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~-----~~~las-------------------~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (369)
.+.+.|++++|+|++.+. ..++|+ ++.++.|++|++..+..... ....+..+
T Consensus 131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~~~l~~~--- 206 (524)
T 2j04_B 131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-KVQTIVHS--- 206 (524)
T ss_dssp ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEE-EEEEEEEC---
T ss_pred ECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce-EEEEEEec---
Confidence 357888999999874111 134443 55778999999976421100 00111111
Q ss_pred CCCCCeeEEEECCC-----CceeEEEEecccceEEEEeCCcceE----------EEEee-eCCcceeeeccCCCCCCCCc
Q 017601 146 VGEGSWSGLCFSPS-----QWSMAAVARSFSKSIDVYDQDIHLR----------TLRTL-WYPSSLNFVQNLSPVNGGPN 209 (369)
Q Consensus 146 ~~~~~~~~l~~~p~-----~~~~~a~~~s~d~~i~lwd~~~~~~----------~~~~~-~~~~~v~~~~~~~~~~~~~~ 209 (369)
.+.+.+++|+|. +..+||++ +.|++|+|||+..... ..... .+...+..+.+. + ++.
T Consensus 207 --~~~V~~v~wsp~~~~~~~~~~LAs~-s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s---~-~~~ 279 (524)
T 2j04_B 207 --FGEVWDLKWHEGCHAPHLVGCLSFV-SQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL---S-PTT 279 (524)
T ss_dssp --CCSEEEEEECSSCCCSSSSCEEEEE-ETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES---S-SSE
T ss_pred --CCcEEEEEECCCCCCCCCCceEEEE-ecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec---C-CCe
Confidence 234668999995 24578888 8999999999853210 01111 233445555543 2 358
Q ss_pred EEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE--EECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccC-
Q 017601 210 MLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV--CSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKY- 284 (369)
Q Consensus 210 lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v--~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~- 284 (369)
|++++.||+|+|||++++. .+...+..| ...|++| +|+|++ +||+||.|++|+|||+++++++.++.+| ..
T Consensus 280 lasgs~DgtV~lWD~~~~~--~~~~~~~~H-~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~-~~~ 355 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPE--VPSFYDQVH-DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR-FRG 355 (524)
T ss_dssp EEEEETTSEEEEEETTBCS--SCSEEEECS-SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE-CSC
T ss_pred EEEEeCCCEEEEEECCCCC--CceEEeecc-cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc-ccc
Confidence 8899999999999999762 344556666 6899999 678886 7899999999999999999888888888 43
Q ss_pred -ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 285 -EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 285 -~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.|.+++|+| ++..+++++.|++|++||++++.++..+.+|... ..+..++++.+|++|+.||+|++||+..+
T Consensus 356 ~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 356 SNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred CcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 589999999 9999999999999999999999988889899843 34444779999999999999999998653
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-28 Score=232.56 Aligned_cols=247 Identities=12% Similarity=0.105 Sum_probs=188.1
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+...+|.+.|++|+|+|++ ..+++++.+|.|.+||+.++. ....+..|.. .+.++++++ .+++
T Consensus 141 ~~~~~~~~~V~sv~fspdg----~~lasgs~Dg~v~iWd~~~~~-----~~~~~~~h~~-----~v~~~s~~~---~~l~ 203 (420)
T 4gga_A 141 LQMEQPGEYISSVAWIKEG----NYLAVGTSSAEVQLWDVQQQK-----RLRNMTSHSA-----RVGSLSWNS---YILS 203 (420)
T ss_dssp EECCSTTCCEEEEEECTTS----SEEEEEETTSCEEEEETTTTE-----EEEEECCCSS-----CEEEEEEET---TEEE
T ss_pred EEecCCCCcEEEEEECCCC----CEEEEEECCCeEEEEEcCCCc-----EEEEEeCCCC-----ceEEEeeCC---CEEE
Confidence 3456889999999999984 789999999999999998651 1222333322 244666654 4777
Q ss_pred EEecccceEEEEeCCcceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC-ceeeeeeccCCCc
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG-GCLHRICGSVGDI 243 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~-~~~~~~~~~~~~~ 243 (369)
++ +.|+.+++||.......+... .+...+..+.+ .+++..+++++.|+.++|||.++++.. ..+.....+ ...
T Consensus 204 sg-s~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~---~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~-~~~ 278 (420)
T 4gga_A 204 SG-SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW---APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGA 278 (420)
T ss_dssp EE-ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE---CTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC-SSC
T ss_pred EE-eCCCceeEeeecccceeeEEecccccceeeeee---cCCCCeeeeeeccccceEEeeccccccceeeeeeccc-CCc
Confidence 77 899999999976433333222 24444444443 245778899999999999999876422 233444444 589
Q ss_pred EEEEEECCCC--cEEE--EeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE--CCCeEEEEECcCCc
Q 017601 244 LYAVCSSSTG--NIAV--AGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG--VDYEVFCGQWRESS 317 (369)
Q Consensus 244 v~~v~~sp~g--~las--gs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s--~D~~i~vwd~~~~~ 317 (369)
|.+++|+|++ .+++ |+.|++|++||++++++...+..| ..+.++.|+| +++.+++++ .|+.|++||+.+++
T Consensus 279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~--~~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS--SCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCC
T ss_pred eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc--cceeeeeecC-CCCeEEEEEecCCCEEEEEECCCCc
Confidence 9999999988 5555 457999999999999999988876 6799999999 888888765 79999999999999
Q ss_pred eeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 318 KVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 318 ~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
++..+.||... ..+..++||.+|+|||.|++|+|||+.+.
T Consensus 356 ~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 356 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99999999833 34444779999999999999999998764
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=224.88 Aligned_cols=200 Identities=16% Similarity=0.140 Sum_probs=163.9
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCc----ceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeC
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI----HLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDL 224 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~----~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~ 224 (369)
.+.+++|+|.++.+++++ +.|++|++||... ....++.+ .|...+..+.+ ++++..+++++.|++|+|||+
T Consensus 19 ~V~~l~~~~~~~~~l~s~-s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~---s~dg~~l~s~s~D~~v~~wd~ 94 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSA-SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL---TADGAYALSASWDKTLRLWDV 94 (319)
T ss_dssp CEEEEEECSSCTTEEEEE-ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEE---CTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEEccCCCccEEEEe-cCCccEEEecCCCCCccccccceEEeCCcccEEEEEE---CCCCCEEEEEeCCCEEEEEEC
Confidence 466899999777788888 9999999998742 11222222 24445554443 356788999999999999999
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC-----CCCE
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI-----DSNY 298 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~-----d~~~ 298 (369)
+++ +++..+.+| ...|++++|+|++ +|++|+.|++|++||++ ++.+.++.+| ...|.++.|+|. ++..
T Consensus 95 ~~~---~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 95 ATG---ETYQRFVGH-KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGH-NDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp TTT---EEEEEEECC-SSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCC-SSCEEEEEECCC------CCE
T ss_pred CCC---CeeEEEccC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEecc-CCcEEEEEEccCCCCCCCccE
Confidence 988 788888877 6899999999999 99999999999999996 5677888999 999999999982 2348
Q ss_pred EEEEECCCeEEEEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 299 IYVQGVDYEVFCGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 299 l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
|++++.|++|++||+++.+....+.+|... ..+...+++.+|++|+.||+|++||+.+++.
T Consensus 169 l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred EEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 999999999999999999999999998732 2344477999999999999999999988753
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=228.96 Aligned_cols=252 Identities=9% Similarity=0.114 Sum_probs=185.9
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEec---CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC--ce
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDS---YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ--WS 162 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~--~~ 162 (369)
..+|.+.|.+++|+|++ ..++++++. +|.|++|++.++.. . ......| ...+.+++|+|+. +.
T Consensus 14 ~~~h~~~v~~~~~~p~~---~~l~~~~s~~~~d~~v~iw~~~~~~~---~-~~~~~~~-----~~~v~~~~~~~~~~~~~ 81 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCS---AKFVTMGNFARGTGVIQLYEIQHGDL---K-LLREIEK-----AKPIKCGTFGATSLQQR 81 (357)
T ss_dssp EEECSSCEEEEEECTTS---SEEEEEEC--CCCEEEEEEEECSSSE---E-EEEEEEE-----SSCEEEEECTTCCTTTC
T ss_pred ccCCCCceEEEEEcCCC---ceEEEecCccCCCcEEEEEeCCCCcc---c-ceeeecc-----cCcEEEEEEcCCCCCCc
Confidence 35799999999999984 357777765 89999999986521 0 0111112 2346789999964 57
Q ss_pred eEEEEecccceEEEEeCCc---ceEEEEeeeCCcceeee---ccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee
Q 017601 163 MAAVARSFSKSIDVYDQDI---HLRTLRTLWYPSSLNFV---QNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~---~~~~~~~~~~~~~v~~~---~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
+++++ +.|+.|++||... ....+. .+...+..+ ....+++++..|++++.|++|++||+++++ ..+..+
T Consensus 82 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~ 156 (357)
T 3i2n_A 82 YLATG-DFGGNLHIWNLEAPEMPVYSVK--GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD--DPVANM 156 (357)
T ss_dssp CEEEE-ETTSCEEEECTTSCSSCSEEEC--CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS--SCSEEE
T ss_pred eEEEe-cCCCeEEEEeCCCCCccEEEEE--ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC--Ccceec
Confidence 78888 8999999999863 333332 233334333 322356778899999999999999999873 255555
Q ss_pred eccC---CCcEEEEE----ECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC--CCCEEEEEECCC
Q 017601 237 CGSV---GDILYAVC----SSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI--DSNYIYVQGVDY 306 (369)
Q Consensus 237 ~~~~---~~~v~~v~----~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~--d~~~l~s~s~D~ 306 (369)
..+. ...+++++ |+|++ .|++|+.|+.|++||+++++.... ..| ...|.+++|+|. ++.+|++++.|+
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNI-KNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EEC-SSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCC-CCceEEEEcCCCCCCCCEEEEECCCC
Confidence 4331 24899998 78899 999999999999999999887544 567 889999999996 689999999999
Q ss_pred eEEEEECcCCceeEEEE-----cCCCe-eeeeEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 017601 307 EVFCGQWRESSKVFAFR-----GDSNW-LGFSKCSNRD-VLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 307 ~i~vwd~~~~~~~~~~~-----g~~~~-~~~~~~~d~~-~l~sgs~dg~I~iWd~~~~~ 358 (369)
.|++||+++++....+. +|... ..+...+++. +|++++.||.|++||++++.
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 99999998866555444 77632 2344467777 89999999999999998654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-29 Score=239.04 Aligned_cols=288 Identities=11% Similarity=0.050 Sum_probs=193.3
Q ss_pred CCeEEEEEEeCC-chhhh-cCCCccccccCccccc-ccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEec
Q 017601 50 GCHLYKLQVMMD-DWFVS-EGKDSLLIPEQTPVMD-SSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLD 126 (369)
Q Consensus 50 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~ 126 (369)
...|..+++.+. +.++. .+.++....++..... ...+...+|.+.|++|+|+|.+ ..+|++++.+|.|++||+.
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~---~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN---TNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC---TTEEEEECSSSCEEEEETT
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC---CCEEEEEeCCCEEEEeecc
Confidence 345777777763 34443 3455554444443322 2344567999999999999852 4689999999999999987
Q ss_pred CCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCC
Q 017601 127 TSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVN 205 (369)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 205 (369)
.... ......+.. ...+.+++|+|+ ..+++++ +.|++|++||... .+..+. .|...+..+.+. |
T Consensus 196 ~~~~-----~~~~~~~~~---~~~~~~~~~~~~-~~~l~~g-~~dg~i~~wd~~~~~~~~~~--~h~~~v~~v~~~---p 260 (435)
T 4e54_B 196 GNIL-----RVFASSDTI---NIWFCSLDVSAS-SRMVVTG-DNVGNVILLNMDGKELWNLR--MHKKKVTHVALN---P 260 (435)
T ss_dssp SCEE-----EEEECCSSC---SCCCCCEEEETT-TTEEEEE-CSSSBEEEEESSSCBCCCSB--CCSSCEEEEEEC---T
T ss_pred CCce-----eEEeccCCC---CccEEEEEECCC-CCEEEEE-eCCCcEeeeccCcceeEEEe--cccceEEeeeec---C
Confidence 4310 011111111 112457999994 5677887 8999999999853 333222 244455555543 3
Q ss_pred CCC-cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccccc
Q 017601 206 GGP-NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSK 283 (369)
Q Consensus 206 ~~~-~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~ 283 (369)
++. .+++++.|++|+|||+++......+.....| ...|++++|+|+| +|++|+.|++|+|||++++.....+..| .
T Consensus 261 ~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~-~ 338 (435)
T 4e54_B 261 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH-RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH-P 338 (435)
T ss_dssp TCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC-SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCC-C
T ss_pred CCceEEEEecCcceeeEEecccccccceEEEeeec-cccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecc-c
Confidence 344 4567889999999999987432333333334 5899999999999 9999999999999999998887777665 3
Q ss_pred C------ceEEEEEcCCCCCEEEEEE------------CCCeEEEEECcCCceeEEEE-cCCCe-eee-eEcCCCCEEEE
Q 017601 284 Y------EITGLSFSSIDSNYIYVQG------------VDYEVFCGQWRESSKVFAFR-GDSNW-LGF-SKCSNRDVLGG 342 (369)
Q Consensus 284 ~------~v~~l~~sp~d~~~l~s~s------------~D~~i~vwd~~~~~~~~~~~-g~~~~-~~~-~~~~d~~~l~s 342 (369)
. .+..+.|+| ++.++++++ .++.|++||..+++++..+. +|... ..+ ...++|.+|++
T Consensus 339 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~las 417 (435)
T 4e54_B 339 HRHFQHLTPIKAAWHP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS 417 (435)
T ss_dssp CCCCSSSCCCBCEECS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEE
T ss_pred ccccccceeEEEEEcC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEE
Confidence 2 234556777 666666654 34689999999999888875 45522 122 23679999999
Q ss_pred EeCCCcEEEEECCCCcc
Q 017601 343 WSDSGSIFVADVVAKEN 359 (369)
Q Consensus 343 gs~dg~I~iWd~~~~~~ 359 (369)
|+ |+.|+|||+++++.
T Consensus 418 g~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 418 AM-GYHILIWSQQEART 433 (435)
T ss_dssp EC-SSEEEECCCC----
T ss_pred Ec-CCcEEEEECCcCee
Confidence 86 78999999998864
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-28 Score=233.06 Aligned_cols=246 Identities=12% Similarity=0.088 Sum_probs=187.0
Q ss_pred ccCCcccee-eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 87 NRCPHRSEV-QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 87 ~~~~H~~~V-~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
.+.+|.+.| .++.+++ ..+++++.+|.|++||+.++. ....+..|. ..+.+++|+|++ .++
T Consensus 116 ~l~~h~~~v~~~~~~~~------~~l~sgs~dg~i~vwd~~~~~-----~~~~~~~h~-----~~V~~l~~~~~~--~l~ 177 (464)
T 3v7d_B 116 TLRGHMTSVITCLQFED------NYVITGADDKMIRVYDSINKK-----FLLQLSGHD-----GGVWALKYAHGG--ILV 177 (464)
T ss_dssp EEECCSSSCEEEEEEET------TEEEEEETTSCEEEEETTTTE-----EEEEECCCS-----SCEEEEEECSTT--EEE
T ss_pred EEcCCCCCcEEEEEECC------CEEEEEcCCCcEEEEECCCCc-----EEEEEeCCC-----cCEEEEEEcCCC--EEE
Confidence 456888885 6666643 489999999999999987541 122233332 346789999854 777
Q ss_pred EEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc--------------
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG-------------- 231 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~-------------- 231 (369)
++ +.|++|++||............+...+..+...+. +++..+++++.|++|++||++++....
T Consensus 178 s~-s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 3v7d_B 178 SG-STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255 (464)
T ss_dssp EE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEES-SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred EE-eCCCCEEEEECCCCcEEEEECCCCCccEEEEEecC-CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence 77 89999999998643322222224444444433221 345688889999999999998763211
Q ss_pred ------eeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 232 ------CLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 232 ------~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
.+..+.++ ...+.++ ++++ .+++|+.|++|++||+++++++..+.+| ...|++++|+| ++++|++++.
T Consensus 256 ~~~~~~~~~~~~~~-~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~l~sg~~ 330 (464)
T 3v7d_B 256 PEENPYFVGVLRGH-MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-TDRIYSTIYDH-ERKRCISASM 330 (464)
T ss_dssp GGGCTTEEEEECCC-SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEET-TTTEEEEEET
T ss_pred cCCCeEEEEEccCc-cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCEEEEEEcC-CCCEEEEEeC
Confidence 13344444 4667766 5778 9999999999999999999999999999 99999999999 9999999999
Q ss_pred CCeEEEEECcCCceeEEEEcCCCeeeeeEc-CCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 305 DYEVFCGQWRESSKVFAFRGDSNWLGFSKC-SNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 305 D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~-~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
|++|++||+++++++..+.+|. ..+... .++.+|++|+.||.|++||+.+++.
T Consensus 331 dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 331 DTTIRIWDLENGELMYTLQGHT--ALVGLLRLSDKFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCS--SCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCcEEEEECCCCcEEEEEeCCC--CcEEEEEEcCCEEEEEeCCCcEEEEECCCCce
Confidence 9999999999999999999998 333332 2689999999999999999988764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=234.63 Aligned_cols=206 Identities=17% Similarity=0.082 Sum_probs=149.3
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|.+.|.+++|+|++ .++++++.+|.|++||+..... . .....+..| ...+.+++|+| ++..+++
T Consensus 50 ~~~~h~~~v~~~~~s~~~----~~l~s~s~d~~v~vwd~~~~~~-~-~~~~~~~~~-----~~~v~~~~~~~-~~~~l~~ 117 (377)
T 3dwl_C 50 TFSDHDKIVTCVDWAPKS----NRIVTCSQDRNAYVYEKRPDGT-W-KQTLVLLRL-----NRAATFVRWSP-NEDKFAV 117 (377)
T ss_dssp CBCCCSSCEEEEEECTTT----CCEEEEETTSSEEEC------C-C-CCEEECCCC-----SSCEEEEECCT-TSSCCEE
T ss_pred EEecCCceEEEEEEeCCC----CEEEEEeCCCeEEEEEcCCCCc-e-eeeeEeccc-----CCceEEEEECC-CCCEEEE
Confidence 356899999999999984 6899999999999999986520 0 011222222 23467899999 4557787
Q ss_pred EecccceEEEEeCCcc-----eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc-------------
Q 017601 167 ARSFSKSIDVYDQDIH-----LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE------------- 228 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~------------- 228 (369)
+ +.|++|++||.... .+.+.. .+...+..+.+ +|++..|++++.|++|++||+++.+
T Consensus 118 ~-~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~---~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 192 (377)
T 3dwl_C 118 G-SGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDW---HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSR 192 (377)
T ss_dssp E-ESSSCEEECCC-----CCCCEEECS-SCCSCEEEEEE---CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSC
T ss_pred E-ecCCeEEEEEECCcccceeeeEeec-ccCCCeEEEEE---cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccc
Confidence 7 89999999998643 222221 14445555553 3456788899999999999986321
Q ss_pred --CCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCcee----eeeccccccCceEEEEEcCCCCCEEEE
Q 017601 229 --NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSA----LSRWVHCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 229 --~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~----~~~~~~h~~~~v~~l~~sp~d~~~l~s 301 (369)
..+++..+ .+ ...|++++|+|++ +|++|+.|++|++||+++++. +..+.+| ...|++++|+| ++++|++
T Consensus 193 ~~~~~~~~~~-~~-~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~-~~~~l~~ 268 (377)
T 3dwl_C 193 LPFNTVCAEY-PS-GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWAN-ESAIVAA 268 (377)
T ss_dssp CCEEEEEECC-CC-SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEEE-TTEEEEE
T ss_pred cchhhhhhcc-cC-CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceEEEEEcC-CCCEEEE
Confidence 11455556 44 5889999999999 999999999999999999887 8889999 99999999999 9999999
Q ss_pred EECCCeEEEEECc
Q 017601 302 QGVDYEVFCGQWR 314 (369)
Q Consensus 302 ~s~D~~i~vwd~~ 314 (369)
++.|+.+ +|+..
T Consensus 269 ~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 269 GYNYSPI-LLQGN 280 (377)
T ss_dssp ESSSSEE-EECCC
T ss_pred EcCCcEE-EEEeC
Confidence 8877666 66654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=230.61 Aligned_cols=246 Identities=14% Similarity=0.092 Sum_probs=183.7
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
...+.++++|+. ..++++++.+|.|.+|++...... ......+..| ...+.+++|+|.++.+++++ +.|+
T Consensus 35 ~~~~~~~~~~~~---~~~~~~~~~~g~i~v~~~~~~~~~-~~~~~~~~~h-----~~~V~~~~~~p~~~~~l~s~-s~dg 104 (402)
T 2aq5_A 35 WDSGFCAVNPKF---MALICEASGGGAFLVLPLGKTGRV-DKNVPLVCGH-----TAPVLDIAWCPHNDNVIASG-SEDC 104 (402)
T ss_dssp CSSCSEEECSSE---EEEEBCCSSSCCEEEEETTCCEEC-CTTCCCBCCC-----SSCEEEEEECTTCTTEEEEE-ETTS
T ss_pred cCCCcEEECCCe---EEEEEEEcCCCEEEEEECccCCCC-CCCCceEecC-----CCCEEEEEeCCCCCCEEEEE-eCCC
Confidence 345568888862 345556788999999998654211 0111112222 34577999999666788888 8999
Q ss_pred eEEEEeCCcc---------eEEEEeeeCCcceeeeccCCCCCCC-CcEEEEEcCCeEEEEeCCcccCCceeeee--eccC
Q 017601 173 SIDVYDQDIH---------LRTLRTLWYPSSLNFVQNLSPVNGG-PNMLAVTEGCQLTIWDLRMKENGGCLHRI--CGSV 240 (369)
Q Consensus 173 ~i~lwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~-~~lla~s~d~~v~iwD~~~~~~~~~~~~~--~~~~ 240 (369)
+|++||.... +..+ ..|...+..+.+. |++ ..|++++.|++|+|||++++ +++..+ ..+
T Consensus 105 ~v~vw~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~---p~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~- 175 (402)
T 2aq5_A 105 TVMVWEIPDGGLVLPLREPVITL--EGHTKRVGIVAWH---PTAQNVLLSAGCDNVILVWDVGTG---AAVLTLGPDVH- 175 (402)
T ss_dssp EEEEEECCTTCCSSCBCSCSEEE--ECCSSCEEEEEEC---SSBTTEEEEEETTSCEEEEETTTT---EEEEEECTTTC-
T ss_pred eEEEEEccCCCCccccCCceEEe--cCCCCeEEEEEEC---cCCCCEEEEEcCCCEEEEEECCCC---CccEEEecCCC-
Confidence 9999998532 2222 2355556666543 344 47888999999999999988 777777 444
Q ss_pred CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeec-cccccCc-eEEEEEcCCCCCEEEEE---ECCCeEEEEECc
Q 017601 241 GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRW-VHCSKYE-ITGLSFSSIDSNYIYVQ---GVDYEVFCGQWR 314 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~-~~h~~~~-v~~l~~sp~d~~~l~s~---s~D~~i~vwd~~ 314 (369)
...|++++|+|++ +|++++.|+.|++||+++++.+..+ .+| ... +.++.|+| ++.+|+++ +.|+.|++||++
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH-EGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTK 253 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSS-CSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETT
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCC-CCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCc
Confidence 6899999999999 9999999999999999999999998 788 655 99999999 99999998 799999999998
Q ss_pred CCce-eEEEE--cCCCeeeeeEcCCCCEEE-EEeCCCcEEEEECCCCcc
Q 017601 315 ESSK-VFAFR--GDSNWLGFSKCSNRDVLG-GWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 315 ~~~~-~~~~~--g~~~~~~~~~~~d~~~l~-sgs~dg~I~iWd~~~~~~ 359 (369)
+.+. +..+. .+.....+...+++.+|+ +|+.||.|++||+.+++.
T Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 254 HLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp BCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred cccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 8654 33333 233234455577888886 666899999999998764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-28 Score=222.26 Aligned_cols=254 Identities=15% Similarity=0.100 Sum_probs=193.6
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCce-eEEEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS-MAAVA 167 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~-~~a~~ 167 (369)
.+|.+.|.+++|+|++ ..+++++.+|.|++|++......... .....| ...+.+++|+|+ +. .++++
T Consensus 8 ~~h~~~v~~~~~s~~~----~~l~~~~~d~~v~iw~~~~~~~~~~~--~~~~~~-----~~~v~~~~~~~~-~~~~l~~~ 75 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSK----SLLLITSWDGSLTVYKFDIQAKNVDL--LQSLRY-----KHPLLCCNFIDN-TDLQIYVG 75 (342)
T ss_dssp SCCSSCEEEEEEEGGG----TEEEEEETTSEEEEEEEETTTTEEEE--EEEEEC-----SSCEEEEEEEES-SSEEEEEE
T ss_pred cCCCCcEEEEEEcCCC----CEEEEEcCCCeEEEEEeCCCCccccc--eeeeec-----CCceEEEEECCC-CCcEEEEE
Confidence 4899999999999983 68899999999999999865211101 111122 234678999995 55 77777
Q ss_pred ecccceEEEEeC-Ccc-eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc---------ccCCceeeee
Q 017601 168 RSFSKSIDVYDQ-DIH-LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM---------KENGGCLHRI 236 (369)
Q Consensus 168 ~s~d~~i~lwd~-~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~---------~~~~~~~~~~ 236 (369)
+.|+.|++||. ... ...+....+...+..+.+. + +..+++++.|+.|++||+++ + +++..+
T Consensus 76 -~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~---~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~ 147 (342)
T 1yfq_A 76 -TVQGEILKVDLIGSPSFQALTNNEANLGICRICKY---G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN---LNSNNT 147 (342)
T ss_dssp -ETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE---T-TTEEEEEETTSEEEEECHHHHTTBCEEEEE---SCSSSS
T ss_pred -cCCCeEEEEEeccCCceEeccccCCCCceEEEEeC---C-CCEEEEEcCCCeEEEEcccccccccccccC---CeeeEE
Confidence 89999999998 643 2222210144555555543 3 56899999999999999987 5 566666
Q ss_pred eccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCC-cee--eeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 237 CGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRR-WSA--LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~-~~~--~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
.+. ..|++++|+|++ +++++.|+.|++||+++ +.. ......| ...|.+++|+|.+++++++++.|+.|++||+
T Consensus 148 ~~~--~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~ 223 (342)
T 1yfq_A 148 KVK--NKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGL-KYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223 (342)
T ss_dssp SSC--CCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSC-SSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred eeC--CceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCC-CCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence 654 899999999988 99999999999999998 543 2344567 8899999999856789999999999999999
Q ss_pred cCC------ceeEEEEcCCC----------eeeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 314 RES------SKVFAFRGDSN----------WLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 314 ~~~------~~~~~~~g~~~----------~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
+.. +....+.+|.. ...+...+++.+|++++.||.|++||+.+++. +..+.+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~ 292 (342)
T 1yfq_A 224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK-IKNFAKF 292 (342)
T ss_dssp CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE-EEECCCC
T ss_pred cCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH-hhhhhcc
Confidence 886 88889988852 23444467999999999999999999998764 4445554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=229.97 Aligned_cols=260 Identities=17% Similarity=0.145 Sum_probs=193.1
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcc-ccccccCCCCCCCCCCeeEEEECCC---Cc--
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDR-LTYSVLPQDCGVGEGSWSGLCFSPS---QW-- 161 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~p~---~~-- 161 (369)
+.+|.+.|++++|+|+ ++++++.+|.|++|++......... ....+..| ...+.+++|+|+ ++
T Consensus 12 ~~~h~~~i~~~~~~~~------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 12 GKAHDADIFSVSACNS------FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-----KSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp SSCSSSCEEEEEECSS------EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC-----TTCEEEEEEEEEEETTTEE
T ss_pred hhhhhcCeEEEEecCC------eEEEEcCCCEEEEEECCCcccccCCCcceEEecC-----CCcEEEEEEecccccCCcc
Confidence 5689999999999873 8999999999999999865311000 11222222 234678999995 15
Q ss_pred -eeEEEEecccceEEEEeCCc--c-----eEEEEeeeC---CcceeeeccCCCC-CCCCc-EEEEEcCCeEEEEeCCc--
Q 017601 162 -SMAAVARSFSKSIDVYDQDI--H-----LRTLRTLWY---PSSLNFVQNLSPV-NGGPN-MLAVTEGCQLTIWDLRM-- 226 (369)
Q Consensus 162 -~~~a~~~s~d~~i~lwd~~~--~-----~~~~~~~~~---~~~v~~~~~~~~~-~~~~~-lla~s~d~~v~iwD~~~-- 226 (369)
.+++++ +.|+.|++||... . ...+..... ...+..+.+.+.. +++.. |++++.|+.|++||+++
T Consensus 81 ~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 81 LCLVATT-SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEEEE-ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred ccEEEEE-cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 677877 8999999999742 2 333322210 1444444433110 35667 88899999999999998
Q ss_pred ----ccCCceee-----eeec-------cCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccc---cc--cCc
Q 017601 227 ----KENGGCLH-----RICG-------SVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVH---CS--KYE 285 (369)
Q Consensus 227 ----~~~~~~~~-----~~~~-------~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~---h~--~~~ 285 (369)
+ ..+. .+.. + ...|++++|+|++.|++|+.|+.|++||+++++++..+.. |. ...
T Consensus 160 ~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 160 DESNS---LTLNWSPTLELQGTVESPMTP-SQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp SHHHH---TTTCCCCEEEEEEEECCSSSS-CCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred ccccc---ceeeccCcceeeeeeccccCC-CCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence 5 3444 5532 3 5889999999999888999999999999999999988887 41 468
Q ss_pred eEEEEEcCCCCCEEEEEECC---CeEEEEECcCCceeEEEEc-------------CCCe-eeeeEcCCCCEEEEEeCCCc
Q 017601 286 ITGLSFSSIDSNYIYVQGVD---YEVFCGQWRESSKVFAFRG-------------DSNW-LGFSKCSNRDVLGGWSDSGS 348 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D---~~i~vwd~~~~~~~~~~~g-------------~~~~-~~~~~~~d~~~l~sgs~dg~ 348 (369)
|.+++|+| ++++|++++.| +.|++||+++++.+..+.+ |... ..+...+++.+|++++.||.
T Consensus 236 i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 314 (397)
T 1sq9_A 236 IRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 314 (397)
T ss_dssp EEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred cceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe
Confidence 99999999 99999999999 9999999999999999988 7632 23444679999999999999
Q ss_pred EEEEECCCCcchhhhcc
Q 017601 349 IFVADVVAKENEISALK 365 (369)
Q Consensus 349 I~iWd~~~~~~~~~~l~ 365 (369)
|++||+++++. +..+.
T Consensus 315 i~iwd~~~~~~-~~~~~ 330 (397)
T 1sq9_A 315 LRFWDVKTKER-ITTLN 330 (397)
T ss_dssp EEEEETTTTEE-EEEEE
T ss_pred EEEEEcCCCce-eEEEe
Confidence 99999988753 34444
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=211.71 Aligned_cols=247 Identities=12% Similarity=0.098 Sum_probs=181.0
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+...+|...|++++|+|++ ..+++++.+|.|++|++.++. .......|.. .+..+++. +..++
T Consensus 61 ~~~~~~~~~V~~v~~~~~~----~~l~sgs~Dg~v~iw~~~~~~-----~~~~~~~h~~-----~~~~~~~~---~~~l~ 123 (318)
T 4ggc_A 61 LQMEQPGEYISSVAWIKEG----NYLAVGTSSAEVQLWDVQQQK-----RLRNMTSHSA-----RVGSLSWN---SYILS 123 (318)
T ss_dssp EECCSTTCCEEEEEECTTS----SEEEEEETTSEEEEEETTTTE-----EEEEEECCSS-----CEEEEEEE---TTEEE
T ss_pred EEecCCCCeEEEEEECCCC----CEEEEEECCCcEEEeecCCce-----eEEEecCccc-----eEEEeecC---CCEEE
Confidence 3456899999999999984 789999999999999998651 1122223322 13234433 34677
Q ss_pred EEecccceEEEEeCCcceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce-eeeeeccCCCc
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC-LHRICGSVGDI 243 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~-~~~~~~~~~~~ 243 (369)
++ +.++.+++|+.......+... .+...+..... .+++..+++++.|++|+|||+++++.... ......+ ...
T Consensus 124 s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~ 198 (318)
T 4ggc_A 124 SG-SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW---APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGA 198 (318)
T ss_dssp EE-ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE---CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCC-CSC
T ss_pred EE-ecCCceEeeecCCCceeEEEEcCccCceEEEEE---cCCCCEEEEEecCcceeEEECCCCcccccceeeeccc-CCc
Confidence 77 899999999876433333222 23444444443 24567889999999999999998742222 2223333 588
Q ss_pred EEEEEECCCC----cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE--CCCeEEEEECcCCc
Q 017601 244 LYAVCSSSTG----NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG--VDYEVFCGQWRESS 317 (369)
Q Consensus 244 v~~v~~sp~g----~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s--~D~~i~vwd~~~~~ 317 (369)
|.+++++|++ .+++++.+++|++||.+......... + ...+..+.|+| ++..+++++ .|++|++||+++++
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~-~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-A-HSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMA 275 (318)
T ss_dssp EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-C-SSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCC
T ss_pred eEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-c-eeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCc
Confidence 9999999988 23567889999999999877766554 4 57899999999 888877665 79999999999999
Q ss_pred eeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 318 KVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 318 ~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
++..+.||... ..+..++|+.+|+|||.||+|+|||+.+.
T Consensus 276 ~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 276 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99999999843 23444779999999999999999999764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=232.88 Aligned_cols=236 Identities=14% Similarity=0.118 Sum_probs=182.0
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|.+.|.+++|.+ ..+++++.+|.|++||+.++. ....+..| ...+.+++|++ ..+++
T Consensus 168 ~~~~h~~~v~~l~~~~------~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h-----~~~v~~l~~~~---~~l~s 228 (435)
T 1p22_A 168 ILTGHTGSVLCLQYDE------RVIITGSSDSTVRVWDVNTGE-----MLNTLIHH-----CEAVLHLRFNN---GMMVT 228 (435)
T ss_dssp EECCCSSCEEEEECCS------SEEEEEETTSCEEEEESSSCC-----EEEEECCC-----CSCEEEEECCT---TEEEE
T ss_pred EEcCCCCcEEEEEECC------CEEEEEcCCCeEEEEECCCCc-----EEEEEcCC-----CCcEEEEEEcC---CEEEE
Confidence 3568999999999932 589999999999999998652 11222222 23466899975 37787
Q ss_pred EecccceEEEEeCCcc--eEEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 167 ARSFSKSIDVYDQDIH--LRTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~--~~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
+ +.|++|++||.... ..... ...+...+..+.+ ++..+++++.|++|++||++++ +++..+..+ ...
T Consensus 229 ~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~-~~~ 298 (435)
T 1p22_A 229 C-SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-----DDKYIVSASGDRTIKVWNTSTC---EFVRTLNGH-KRG 298 (435)
T ss_dssp E-ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTTC---CEEEEEECC-SSC
T ss_pred e-eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-----CCCEEEEEeCCCeEEEEECCcC---cEEEEEcCC-CCc
Confidence 7 89999999998532 22112 2234445555543 3578999999999999999988 788888866 688
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc-----
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS----- 317 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~----- 317 (369)
|.+++|+ + .+++|+.|++|++||+++++++.++.+| ...|++++| ++.+|++++.|++|++||++++.
T Consensus 299 v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 372 (435)
T 1p22_A 299 IACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH-EELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAP 372 (435)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSC
T ss_pred EEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCC-cCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCcccc
Confidence 9999994 5 9999999999999999999999999999 999999999 45899999999999999997755
Q ss_pred ----eeEEEEcCCCeeeeeEc-CCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 318 ----KVFAFRGDSNWLGFSKC-SNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 318 ----~~~~~~g~~~~~~~~~~-~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
++..+.+|. ..+... .++.+|++|+.||+|++||+.+...
T Consensus 373 ~~~~~~~~~~~h~--~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 373 AGTLCLRTLVEHS--GRVFRLQFDEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp TTTTEEEEECCCS--SCCCCEEECSSCEEECCSSSEEEEEC------
T ss_pred ccchheeeccCCC--CCeEEEEeCCCEEEEEeCCCEEEEEECCCCCC
Confidence 788888887 333322 2889999999999999999987653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=235.79 Aligned_cols=285 Identities=12% Similarity=0.086 Sum_probs=195.5
Q ss_pred CeEEEEEEeC-Cchhh-hcCCCccccccCccc---cccc-ccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEE
Q 017601 51 CHLYKLQVMM-DDWFV-SEGKDSLLIPEQTPV---MDSS-MLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSK 124 (369)
Q Consensus 51 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~---~~~~-~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~ 124 (369)
..|..+++.. .+..+ ..+.++.+..++... .... .....+|.+.|.+++|+|++ ..+++++.+|.|++||
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~s~s~dg~i~vwd 139 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF----DAFAVSSKDGQIIVLK 139 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS----SEEEEEETTSEEEEEE
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC----CEEEEEeCCCEEEEEE
Confidence 4577777777 55555 445566554444432 1111 11123699999999999973 6899999999999999
Q ss_pred ecCC--CCCCcc------ccccccCCCCCCCCCCeeEEE--ECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCC
Q 017601 125 LDTS--GKDVDR------LTYSVLPQDCGVGEGSWSGLC--FSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYP 192 (369)
Q Consensus 125 ~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~l~--~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~ 192 (369)
+... ...... ....+.+. + ....+.++. ++| ++.+++++ +.|++|++||... .+..+....+.
T Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~h~ 214 (437)
T 3gre_A 140 VNHYQQESEVKFLNCECIRKINLKNF--G-KNEYAVRMRAFVNE-EKSLLVAL-TNLSRVIIFDIRTLERLQIIENSPRH 214 (437)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEGGGG--S-SCCCEEEEEEEECS-SCEEEEEE-ETTSEEEEEETTTCCEEEEEECCGGG
T ss_pred eccccCCceeeccccceeEEEEccCc--c-cccCceEEEEEEcC-CCCEEEEE-eCCCeEEEEeCCCCeeeEEEccCCCC
Confidence 9521 110000 00111110 0 122344555 556 45677777 8999999999863 34444332134
Q ss_pred cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee-ccCCCcEEEEEEC----CCC-cEEEEeCCCcEEE
Q 017601 193 SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC-GSVGDILYAVCSS----STG-NIAVAGADRTVTI 266 (369)
Q Consensus 193 ~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~-~~~~~~v~~v~~s----p~g-~lasgs~D~~v~v 266 (369)
..+..+.+ +|++..|++++.|++|++||++++ +++..+. .+ ...|++++|+ |++ +|++|+.|++|++
T Consensus 215 ~~v~~~~~---s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 215 GAVSSICI---DEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp CCEEEEEE---CTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred CceEEEEE---CCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 45555553 356778999999999999999987 7887765 33 4789999655 567 9999999999999
Q ss_pred EeCCCceeeeecccc-------------------------ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 267 YDPRRWSALSRWVHC-------------------------SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 267 wD~~~~~~~~~~~~h-------------------------~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
||+++++.+..+.+| +...|++++|++ +++|++++.|+.|++||++++++...
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSN--DKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEET--TEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECC--ceEEEecCCCCeEEEEECCCcccceE
Confidence 999998887776644 155688888884 58999999999999999999888888
Q ss_pred EEcC-------------------------------------CC-eeeeeEcCC--CCEEEEEeCCCcEEEEE
Q 017601 322 FRGD-------------------------------------SN-WLGFSKCSN--RDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 322 ~~g~-------------------------------------~~-~~~~~~~~d--~~~l~sgs~dg~I~iWd 353 (369)
+.+| .. ...+..+++ +.+|++|+.||.|+||+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8763 31 112222334 77999999999999995
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-27 Score=224.20 Aligned_cols=254 Identities=14% Similarity=0.172 Sum_probs=194.4
Q ss_pred CCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCC
Q 017601 68 GKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVG 147 (369)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (369)
+.++.+..++..... ....+.+|.+.|.+++|++ ..+++++.+|.|++||+.++. ....+..|.
T Consensus 136 ~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~------~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~---- 199 (445)
T 2ovr_B 136 SDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMRD------NIIISGSTDRTLKVWNAETGE-----CIHTLYGHT---- 199 (445)
T ss_dssp ETTSCEEEEETTTCC-EEEECCCCSSCEEEEEEET------TEEEEEETTSCEEEEETTTTE-----EEEEECCCS----
T ss_pred ECCCcEEEEECCCCc-EEEEEcCCCCCEEEEEecC------CEEEEEeCCCeEEEEECCcCc-----EEEEECCCC----
Confidence 344444433433332 2233568999999999974 389999999999999997551 122233332
Q ss_pred CCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 148 EGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 148 ~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
..+.+++|++ ..++++ +.|++|++||............+...+..+.. ++..+++++.|+.|++||++++
T Consensus 200 -~~v~~~~~~~---~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~dg~i~iwd~~~~ 269 (445)
T 2ovr_B 200 -STVRCMHLHE---KRVVSG-SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-----DGRRVVSGAYDFMVKVWDPETE 269 (445)
T ss_dssp -SCEEEEEEET---TEEEEE-ETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-----CSSCEEEEETTSCEEEEEGGGT
T ss_pred -CcEEEEEecC---CEEEEE-eCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-----CCCEEEEEcCCCEEEEEECCCC
Confidence 2366788864 457777 89999999998643222222234445555553 4678999999999999999988
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCC
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY 306 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~ 306 (369)
+++..+..+ ...|++++| ++ .+++|+.|++|++||+++++.+.++.+| ...+.++.+++ +++++++.|+
T Consensus 270 ---~~~~~~~~~-~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~---~~l~~~~~dg 339 (445)
T 2ovr_B 270 ---TCLHTLQGH-TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELKD---NILVSGNADS 339 (445)
T ss_dssp ---EEEEEECCC-SSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEET---TEEEEEETTS
T ss_pred ---cEeEEecCC-CCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEEEeC---CEEEEEeCCC
Confidence 788888766 689999999 67 9999999999999999999999999999 89999888755 7999999999
Q ss_pred eEEEEECcCCceeEEEEc---CCCeeeeeEc-CCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 307 EVFCGQWRESSKVFAFRG---DSNWLGFSKC-SNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 307 ~i~vwd~~~~~~~~~~~g---~~~~~~~~~~-~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.|++||+++++++..+.+ |. ..+... .++.+|++|+.||.|++||+.+++.
T Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 340 TVKIWDIKTGQCLQTLQGPNKHQ--SAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp CEEEEETTTCCEEEEECSTTSCS--SCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred eEEEEECCCCcEEEEEccCCCCC--CCEEEEEECCCEEEEEeCCCeEEEEECCCCce
Confidence 999999999999999986 54 233332 2789999999999999999998864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=214.52 Aligned_cols=237 Identities=11% Similarity=0.103 Sum_probs=183.8
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|.+.|++++| +++ ..+++++.+|.|++||+.... ....+..+ ...+.+++|+|+ ...+++
T Consensus 13 ~l~~h~~~v~~~~~-~~~----~~l~s~~~dg~v~vw~~~~~~-----~~~~~~~~-----~~~v~~~~~~~~-~~~l~~ 76 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDD----SKVASVSRDGTVRLWSKDDQW-----LGTVVYTG-----QGFLNSVCYDSE-KELLLF 76 (313)
T ss_dssp EECCCSSCEEEEEE-EET----TEEEEEETTSEEEEEEESSSE-----EEEEEEEC-----SSCEEEEEEETT-TTEEEE
T ss_pred HhhCCCCCcEEEEe-cCC----CEEEEEEcCCcEEEEECCCCE-----EEEEeecC-----CccEEEEEECCC-CCEEEE
Confidence 36789999999999 763 579999999999999996541 11122222 234678999994 557787
Q ss_pred EecccceEEEEeCCcc-----eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC
Q 017601 167 ARSFSKSIDVYDQDIH-----LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~ 241 (369)
+ +.|+.|++|+.... ...+ ..+...+..+.+ ++..+++++.|++|++|| .+ ..+..+..+ .
T Consensus 77 ~-~~dg~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~-----~~~~l~~~~~d~~i~~~d--~~---~~~~~~~~~-~ 142 (313)
T 3odt_A 77 G-GKDTMINGVPLFATSGEDPLYTL--IGHQGNVCSLSF-----QDGVVISGSWDKTAKVWK--EG---SLVYNLQAH-N 142 (313)
T ss_dssp E-ETTSCEEEEETTCCTTSCC-CEE--CCCSSCEEEEEE-----ETTEEEEEETTSEEEEEE--TT---EEEEEEECC-S
T ss_pred e-cCCCeEEEEEeeecCCCCcccch--hhcccCEEEEEe-----cCCEEEEEeCCCCEEEEc--CC---cEEEecccC-C
Confidence 7 89999999997422 2222 223444444443 356899999999999999 33 566666665 6
Q ss_pred CcEEEEEECC-CC-cEEEEeCCCcEEEEeCCCceeeeeccc-cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCce
Q 017601 242 DILYAVCSSS-TG-NIAVAGADRTVTIYDPRRWSALSRWVH-CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSK 318 (369)
Q Consensus 242 ~~v~~v~~sp-~g-~lasgs~D~~v~vwD~~~~~~~~~~~~-h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~ 318 (369)
..+.+++|+| ++ .+++++.|+.|++|| ..+....+.. | ...|.+++|+| ++. +++++.|+.|++||+++++.
T Consensus 143 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~-~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 143 ASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIH-NDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp SCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSC-SSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCE
T ss_pred CceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccC-cccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhh
Confidence 8999999988 77 999999999999999 5566777777 6 89999999999 877 99999999999999999999
Q ss_pred eEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 319 VFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 319 ~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+..+.+|... ..+...+++ .|++++.||.|++||+++++.
T Consensus 218 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~ 258 (313)
T 3odt_A 218 LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL 258 (313)
T ss_dssp EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE
T ss_pred hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCce
Confidence 9999988732 233345677 689999999999999988863
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=222.64 Aligned_cols=225 Identities=12% Similarity=0.076 Sum_probs=168.2
Q ss_pred ceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEE--
Q 017601 108 YMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRT-- 185 (369)
Q Consensus 108 ~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~-- 185 (369)
..++++++.+|.|++||+.++.. + ..+. ...+..++|+|. ++++ +.|++|++|+....+..
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~-~----~~~~-------~~~v~~~~~~~~----~~s~-s~D~~i~~w~~~~~~~~~~ 110 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKT-I----TTIT-------TPNPRTGGEHPA----IISR-GPCNRLLLLYPGNQITILD 110 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSC-E----EEEE-------EECCCTTCCCCS----EEEE-CSTTEEEEEETTTEEEEEE
T ss_pred CCEEEEECCCCcEEEEECCCCcE-E----EEEe-------cCCceeeeeCCc----eEEe-cCCCeEEEEEccCceEEee
Confidence 47999999999999999986521 1 1111 012335788884 7777 89999999987643211
Q ss_pred ------EEee--eCCcceeeeccCCCCC--CCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-c
Q 017601 186 ------LRTL--WYPSSLNFVQNLSPVN--GGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-N 254 (369)
Q Consensus 186 ------~~~~--~~~~~v~~~~~~~~~~--~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~ 254 (369)
++.. .+...+..+.+ .| ++..+++++.|++|++||++++ +++.....+....|++++|+|+| +
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~~i~~~~~~pdg~~ 184 (343)
T 3lrv_A 111 SKTNKVLREIEVDSANEIIYMYG---HNEVNTEYFIWADNRGTIGFQSYEDD---SQYIVHSAKSDVEYSSGVLHKDSLL 184 (343)
T ss_dssp TTTCCEEEEEECCCSSCEEEEEC---CC---CCEEEEEETTCCEEEEESSSS---CEEEEECCCSSCCCCEEEECTTSCE
T ss_pred cCCcceeEEeecCCCCCEEEEEc---CCCCCCCEEEEEeCCCcEEEEECCCC---cEEEEEecCCCCceEEEEECCCCCE
Confidence 1111 23344555553 34 5678999999999999999988 66555533324679999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCceee-eeccc-cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc---CCCe-
Q 017601 255 IAVAGADRTVTIYDPRRWSAL-SRWVH-CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG---DSNW- 328 (369)
Q Consensus 255 lasgs~D~~v~vwD~~~~~~~-~~~~~-h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g---~~~~- 328 (369)
|++|+.|++|++||+++++.+ ..+.+ | ...|++++|+| ++.+|++++ |++|++||+++.+....+.. |...
T Consensus 185 lasg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~ 261 (343)
T 3lrv_A 185 LALYSPDGILDVYNLSSPDQASSRFPVDE-EAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKT 261 (343)
T ss_dssp EEEECTTSCEEEEESSCTTSCCEECCCCT-TSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----
T ss_pred EEEEcCCCEEEEEECCCCCCCccEEeccC-CCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccc
Confidence 999999999999999999887 78888 8 99999999999 999999999 55999999998766544332 2210
Q ss_pred --eeeeEcCCCCEEEEEeC-CCcEEEEECCCCc
Q 017601 329 --LGFSKCSNRDVLGGWSD-SGSIFVADVVAKE 358 (369)
Q Consensus 329 --~~~~~~~d~~~l~sgs~-dg~I~iWd~~~~~ 358 (369)
..+...+++.+|++++. |+.|++|++.+..
T Consensus 262 ~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 262 GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred cceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 12555779999999998 9999999986654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-27 Score=222.75 Aligned_cols=247 Identities=11% Similarity=0.081 Sum_probs=186.5
Q ss_pred cccCCccceee--EEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee
Q 017601 86 LNRCPHRSEVQ--SIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 86 ~~~~~H~~~V~--~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 163 (369)
+...+|.+.+. +++|+++ .+++++.+|.|++|++.++.. ...... .....+.+++|+| ++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~------~l~~~~~d~~v~lw~~~~~~~-----~~~~~~----~~~~~v~~v~~s~-~~~~ 148 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNL------NVVAVALERNVYVWNADSGSV-----SALAET----DESTYVASVKWSH-DGSF 148 (401)
T ss_dssp EECTTCCCCTTCBCEEECTT------SEEEEEETTEEEEEETTTCCE-----EEEEEC----CTTCCEEEEEECT-TSSE
T ss_pred eeCCCCcCCceEEEEeecCC------CEEEEECCCeEEEeeCCCCcE-----eEeeec----CCCCCEEEEEECC-CCCE
Confidence 33456776654 4555543 355666889999999986521 111111 0123477999999 4567
Q ss_pred EEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 164 AAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
++++ +.|+.|++||............+...+..+.+ ++..+++++.|++|++||++... ..+..+..+ ...
T Consensus 149 l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~-~~~ 219 (401)
T 4aez_A 149 LSVG-LGNGLVDIYDVESQTKLRTMAGHQARVGCLSW-----NRHVLSSGSRSGAIHHHDVRIAN--HQIGTLQGH-SSE 219 (401)
T ss_dssp EEEE-ETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTSSS--CEEEEEECC-SSC
T ss_pred EEEE-CCCCeEEEEECcCCeEEEEecCCCCceEEEEE-----CCCEEEEEcCCCCEEEEecccCc--ceeeEEcCC-CCC
Confidence 7887 88999999998643222222234455555553 24688889999999999999542 566677766 689
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE--CCCeEEEEECcCCceeE
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG--VDYEVFCGQWRESSKVF 320 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s--~D~~i~vwd~~~~~~~~ 320 (369)
|.+++|+|++ +|++|+.|++|++||+++++++..+.+| ...|.+++|+|....++++++ .|+.|++||+++++++.
T Consensus 220 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 220 VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN 298 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE
T ss_pred eeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE
Confidence 9999999999 9999999999999999999999999999 999999999993345666665 79999999999999999
Q ss_pred EEEcCCCeeeeeEcCCCCEEEE--EeCCCcEEEEECCCCc
Q 017601 321 AFRGDSNWLGFSKCSNRDVLGG--WSDSGSIFVADVVAKE 358 (369)
Q Consensus 321 ~~~g~~~~~~~~~~~d~~~l~s--gs~dg~I~iWd~~~~~ 358 (369)
.+..+.....+...+++.+|++ |+.||.|++||+.+++
T Consensus 299 ~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 299 TVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp EEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred EEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence 9987765556666789999998 4489999999998864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=244.56 Aligned_cols=249 Identities=12% Similarity=0.096 Sum_probs=197.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|.+++|+|++ ..+++++.+|.|.+||+.++. ....+..|. ..+.+++|+| ++..++++
T Consensus 9 ~~~h~~~v~~i~~sp~~----~~la~~~~~g~v~iwd~~~~~-----~~~~~~~~~-----~~v~~~~~s~-~~~~l~~~ 73 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTE----PWVLTTLYSGRVEIWNYETQV-----EVRSIQVTE-----TPVRAGKFIA-RKNWIIVG 73 (814)
T ss_dssp EEEECSCEEEEEECSSS----SEEEEEETTSEEEEEETTTTE-----EEEEEECCS-----SCEEEEEEEG-GGTEEEEE
T ss_pred eecCCCceEEEEECCCC----CEEEEEeCCCEEEEEECCCCc-----eEEEEecCC-----CcEEEEEEeC-CCCEEEEE
Confidence 46899999999999984 689999999999999987541 112222232 3467899999 45678887
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
+.|+.|++||............+...+..+.+ +|++..+++++.|++|++||++++. .....+..+ ...|.++
T Consensus 74 -~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~-~~~v~~~ 146 (814)
T 3mkq_A 74 -SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENNW--ALEQTFEGH-EHFVMCV 146 (814)
T ss_dssp -ETTSEEEEEETTTCCEEEEEECCSSCEEEEEE---CSSSSEEEEEETTSEEEEEEGGGTS--EEEEEEECC-SSCEEEE
T ss_pred -eCCCeEEEEECCCCcEEEEEecCCCCEEEEEE---eCCCCEEEEEcCCCEEEEEECCCCc--eEEEEEcCC-CCcEEEE
Confidence 78999999997643322222335555555554 3456789999999999999998762 455566655 6889999
Q ss_pred EECC-CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC-CCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 248 CSSS-TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI-DSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 248 ~~sp-~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~-d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+|+| ++ .|++++.|++|++||+++++....+..+....+..++|+|. ++.+|++++.|+.|++||+++++++..+.+
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 226 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC
Confidence 9999 77 99999999999999999988888887763589999999973 678999999999999999999999999998
Q ss_pred CCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 325 DSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 325 ~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|... ..+..++++.+|++++.||.|++||+.+++
T Consensus 227 ~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 8732 234447799999999999999999998865
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-27 Score=225.27 Aligned_cols=237 Identities=13% Similarity=0.088 Sum_probs=184.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..+|...|.++++.. ..+++++.+|.|++||+.+.. ....+..|. ..+.+++| ++..++++
T Consensus 129 ~~~~~~~v~~~~~d~------~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~-----~~v~~l~~---~~~~l~sg 189 (435)
T 1p22_A 129 RSETSKGVYCLQYDD------QKIVSGLRDNTIKIWDKNTLE-----CKRILTGHT-----GSVLCLQY---DERVIITG 189 (435)
T ss_dssp CCSSCCCEEEEECCS------SEEEEEESSSCEEEEESSSCC-----EEEEECCCS-----SCEEEEEC---CSSEEEEE
T ss_pred ccCCCCcEEEEEECC------CEEEEEeCCCeEEEEeCCCCe-----EEEEEcCCC-----CcEEEEEE---CCCEEEEE
Confidence 346778899998832 589999999999999987542 122233332 34667888 34578887
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
+.|++|++||............+...+..+.+ +++.+++++.|++|++||++++........+.++ ...|+++
T Consensus 190 -~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~ 262 (435)
T 1p22_A 190 -SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVV 262 (435)
T ss_dssp -ETTSCEEEEESSSCCEEEEECCCCSCEEEEEC-----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCC-SSCEEEE
T ss_pred -cCCCeEEEEECCCCcEEEEEcCCCCcEEEEEE-----cCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC-CCcEEEE
Confidence 89999999998643222222234455555553 2458999999999999999987322222455555 6899999
Q ss_pred EECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 248 CSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
+| ++ .|++|+.|++|++||+++++.+.++.+| ...|.++.|++ +++++++.|++|++||+++++++..+.+|.
T Consensus 263 ~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 336 (435)
T 1p22_A 263 DF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHE 336 (435)
T ss_dssp EE--ETTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred Ee--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC-CCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEeCCc
Confidence 99 66 9999999999999999999999999999 99999999954 899999999999999999999999999998
Q ss_pred CeeeeeE-cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 327 NWLGFSK-CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 327 ~~~~~~~-~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
..+.. ..++.+|++|+.||.|++||+.+++
T Consensus 337 --~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 337 --ELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp --SCEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred --CcEEEEEecCCEEEEEeCCCcEEEEECCCCC
Confidence 33333 2389999999999999999997654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-27 Score=234.64 Aligned_cols=255 Identities=16% Similarity=0.121 Sum_probs=196.3
Q ss_pred cCCccce-eeEEEEee--cCCCCceEEEEEecCCcEEEEEecCCCCC--C-ccccccccCCCCCCCCCCeeEEEECCCCc
Q 017601 88 RCPHRSE-VQSIALAE--TDSSGYMVLGSVDSYGHLIVSKLDTSGKD--V-DRLTYSVLPQDCGVGEGSWSGLCFSPSQW 161 (369)
Q Consensus 88 ~~~H~~~-V~~l~~s~--~~~~~~~~las~d~~g~v~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 161 (369)
+.+|.+. |++++|+| ++ .++++++.+|.|++|++..+... . ......+..+ ...+.+++|+|++
T Consensus 59 ~~~h~~~~v~~~~~sp~~~~----~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~- 128 (615)
T 1pgu_A 59 FTGHGSSVVTTVKFSPIKGS----QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL-----AGPISDISWDFEG- 128 (615)
T ss_dssp ECTTTTSCEEEEEECSSTTC----CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC-----SSCEEEEEECTTS-
T ss_pred EecCCCceEEEEEECcCCCC----CEEEEecCCCEEEEEeCCCCcccccccccccchhhcc-----cccEEEEEEeCCC-
Confidence 5689999 99999999 84 79999999999999999633000 0 0111122222 2347789999955
Q ss_pred eeEEEEeccc----ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCC-cEEEEEcCCeEEEEeCCcccCCceeeee
Q 017601 162 SMAAVARSFS----KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 162 ~~~a~~~s~d----~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
..++++ +.+ +.|.+||.+.....+. .+...+..+.+ +|++. .+++++.|+.|++||++++ +.+..+
T Consensus 129 ~~l~~~-~~~~~~~~~v~~~d~~~~~~~~~--~~~~~v~~~~~---~~~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~ 199 (615)
T 1pgu_A 129 RRLCVV-GEGRDNFGVFISWDSGNSLGEVS--GHSQRINACHL---KQSRPMRSMTVGDDGSVVFYQGPPF---KFSASD 199 (615)
T ss_dssp SEEEEE-ECCSSCSEEEEETTTCCEEEECC--SCSSCEEEEEE---CSSSSCEEEEEETTTEEEEEETTTB---EEEEEE
T ss_pred CEEEEe-ccCCCCccEEEEEECCCcceeee--cCCccEEEEEE---CCCCCcEEEEEeCCCcEEEEeCCCc---ceeeee
Confidence 466666 555 7999999766555543 24444555553 34454 6888999999999999988 778888
Q ss_pred eccCCC---cEEEEEECCC-C-cEEEEeCCCcEEEEeCCCceeeeec-c---ccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 237 CGSVGD---ILYAVCSSST-G-NIAVAGADRTVTIYDPRRWSALSRW-V---HCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 237 ~~~~~~---~v~~v~~sp~-g-~lasgs~D~~v~vwD~~~~~~~~~~-~---~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
..+ .. .|++++|+|+ + +|++++.|+.|++||+++++.+..+ . +| ...|.+++|+ ++++|++++.|+.
T Consensus 200 ~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 200 RTH-HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV-QGGIFALSWL--DSQKFATVGADAT 275 (615)
T ss_dssp CSS-SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC-CSCEEEEEES--SSSEEEEEETTSE
T ss_pred ccc-CCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc-CCceEEEEEc--CCCEEEEEcCCCc
Confidence 766 46 8999999999 8 9999999999999999999999998 6 78 9999999999 8899999999999
Q ss_pred EEEEECcCCceeEEEEcCC-----CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 308 VFCGQWRESSKVFAFRGDS-----NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~-----~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
|++||+++++.+..+..+. ....+. .+++.++++++.||.|++||+.+++. +..+.+|
T Consensus 276 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~g~i~~~d~~~~~~-~~~~~~~ 338 (615)
T 1pgu_A 276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVV-ATGNGRIISLSLDGTLNFYELGHDEV-LKTISGH 338 (615)
T ss_dssp EEEEETTTTEEEEEEECCTTCGGGCEEEEE-EEETTEEEEEETTSCEEEEETTEEEE-EEEECCC
T ss_pred EEEEECCCCcEEEEEcCCCCcccCceeEEE-eCCCCeEEEEECCCCEEEEECCCCcE-EEEEeCC
Confidence 9999999999999998762 111222 23889999999999999999987543 4445544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-27 Score=217.75 Aligned_cols=240 Identities=11% Similarity=0.065 Sum_probs=180.0
Q ss_pred cCCccceeeEEEEeecCCCCce-EEEEEecCCcEEEEEe-cCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYM-VLGSVDSYGHLIVSKL-DTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~-~las~d~~g~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+|...|.+++|+|++ . .+++++.+|.|++|++ .... ...+... .....+.+++|+| ...++
T Consensus 52 ~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~~wd~~~~~~------~~~~~~~---~~~~~v~~l~~~~--~~~l~ 116 (342)
T 1yfq_A 52 SLRYKHPLLCCNFIDNT----DLQIYVGTVQGEILKVDLIGSPS------FQALTNN---EANLGICRICKYG--DDKLI 116 (342)
T ss_dssp EEECSSCEEEEEEEESS----SEEEEEEETTSCEEEECSSSSSS------EEECBSC---CCCSCEEEEEEET--TTEEE
T ss_pred eeecCCceEEEEECCCC----CcEEEEEcCCCeEEEEEeccCCc------eEecccc---CCCCceEEEEeCC--CCEEE
Confidence 44899999999999983 6 8899999999999998 6441 1222220 0123467899999 45777
Q ss_pred EEecccceEEEEeCCcc--------eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc-ccCCceeeee
Q 017601 166 VARSFSKSIDVYDQDIH--------LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM-KENGGCLHRI 236 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~-~~~~~~~~~~ 236 (369)
++ +.|+.|++||.... .+.+....+...+..+.+. ++ .+++++.|+.|++||+++ +.. ......
T Consensus 117 s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~--~l~~~~~d~~i~i~d~~~~~~~-~~~~~~ 189 (342)
T 1yfq_A 117 AA-SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN---SS--RLIVGMNNSQVQWFRLPLCEDD-NGTIEE 189 (342)
T ss_dssp EE-ETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC---SS--EEEEEESTTEEEEEESSCCTTC-CCEEEE
T ss_pred EE-cCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec---CC--cEEEEeCCCeEEEEECCccccc-cceeee
Confidence 77 89999999996430 1112222244444444432 32 388899999999999998 521 111222
Q ss_pred eccCCCcEEEEEECC-CC-cEEEEeCCCcEEEEeCCCc------eeeeeccccccC---------ceEEEEEcCCCCCEE
Q 017601 237 CGSVGDILYAVCSSS-TG-NIAVAGADRTVTIYDPRRW------SALSRWVHCSKY---------EITGLSFSSIDSNYI 299 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp-~g-~lasgs~D~~v~vwD~~~~------~~~~~~~~h~~~---------~v~~l~~sp~d~~~l 299 (369)
..+ ...|.+++|+| ++ ++++|+.|+.|++||++.. +....+..| .. .|++++|+| ++++|
T Consensus 190 ~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l 266 (342)
T 1yfq_A 190 SGL-KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH-RLNLKDTNLAYPVNSIEFSP-RHKFL 266 (342)
T ss_dssp CSC-SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC-CCCTTCCSSCCCEEEEEECT-TTCCE
T ss_pred cCC-CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc-cccccccccceeEEEEEEcC-CCCEE
Confidence 222 48899999999 99 9999999999999999887 777788887 55 999999999 99999
Q ss_pred EEEECCCeEEEEECcCCceeEEEEcC-CCeeeeeEcCCCCEEEEEeCCCc-EEEEE
Q 017601 300 YVQGVDYEVFCGQWRESSKVFAFRGD-SNWLGFSKCSNRDVLGGWSDSGS-IFVAD 353 (369)
Q Consensus 300 ~s~s~D~~i~vwd~~~~~~~~~~~g~-~~~~~~~~~~d~~~l~sgs~dg~-I~iWd 353 (369)
++++.|+.|++||+++++++..+.+| ........ +++.+|++++.||. .+.|.
T Consensus 267 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~-~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 267 YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA-CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE-ECSSEEEEEEECTHHHHCSS
T ss_pred EEecCCceEEEEcCccHhHhhhhhcccCCCceEec-CCCCeEEEEecCCccccccc
Confidence 99999999999999999999999988 63322222 79999999999998 44444
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-27 Score=250.53 Aligned_cols=246 Identities=19% Similarity=0.180 Sum_probs=195.7
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+.+.+|.+.|++++|+|++ ..+++++.+|.|++||+.++. ....+..|. ..+.+++|+|+ +.+++
T Consensus 609 ~~~~~h~~~v~~~~~s~~~----~~l~s~~~d~~i~vw~~~~~~-----~~~~~~~h~-----~~v~~~~~s~~-~~~l~ 673 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDG----QRIASCGADKTLQVFKAETGE-----KLLDIKAHE-----DEVLCCAFSSD-DSYIA 673 (1249)
T ss_dssp EEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCC-----EEEEECCCS-----SCEEEEEECTT-SSEEE
T ss_pred EEEecccccEEEEEECCCC----CEEEEEeCCCeEEEEECCCCC-----EEEEeccCC-----CCEEEEEEecC-CCEEE
Confidence 3456899999999999984 789999999999999998652 122233332 34679999995 55788
Q ss_pred EEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 166 VARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
++ +.|++|++||... .+..+. .+...+..+.+.+.+ +...+++++.|++|++||++++ .++..+.++ ...
T Consensus 674 s~-~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~---~~~~~~~~h-~~~ 745 (1249)
T 3sfz_A 674 TC-SADKKVKIWDSATGKLVHTYD--EHSEQVNCCHFTNKS-NHLLLATGSNDFFLKLWDLNQK---ECRNTMFGH-TNS 745 (1249)
T ss_dssp EE-ETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSS-SCCEEEEEETTSCEEEEETTSS---SEEEEECCC-SSC
T ss_pred EE-eCCCeEEEEECCCCceEEEEc--CCCCcEEEEEEecCC-CceEEEEEeCCCeEEEEECCCc---chhheecCC-CCC
Confidence 87 8999999999863 333332 344455555543321 2446777889999999999988 788888776 689
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeec--------------------------------------------
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRW-------------------------------------------- 278 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~-------------------------------------------- 278 (369)
|++++|+|++ .|++|+.||+|++||+++++....+
T Consensus 746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d 825 (1249)
T 3sfz_A 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 825 (1249)
T ss_dssp EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 9999999999 9999999999999999876543322
Q ss_pred -----------cccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCC
Q 017601 279 -----------VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDS 346 (369)
Q Consensus 279 -----------~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~d 346 (369)
.+| ...|.+++|+| ++.++++++.|+.|++||+.++..+..+.+|..+ ..+..++++.+|++++.|
T Consensus 826 ~~~~~~~~~~~~~~-~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 826 IHTSGLLAEIHTGH-HSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp TTTCCEEEEEECSS-SSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ecCCCceeEEcCCC-CCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC
Confidence 156 78899999999 9999999999999999999999999999999843 244447799999999999
Q ss_pred CcEEEEECCC
Q 017601 347 GSIFVADVVA 356 (369)
Q Consensus 347 g~I~iWd~~~ 356 (369)
|.|++||+.+
T Consensus 904 g~v~vw~~~~ 913 (1249)
T 3sfz_A 904 QTIRVWETKK 913 (1249)
T ss_dssp SCEEEEEHHH
T ss_pred CeEEEEEccc
Confidence 9999999764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-27 Score=213.46 Aligned_cols=215 Identities=15% Similarity=0.083 Sum_probs=155.3
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC-ceeEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ-WSMAA 165 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~~a 165 (369)
.+.+|.+.|++++|+++. ...+|++++.+|.|++||+..+... ....+..| ...+.+++|+|+. ..+++
T Consensus 48 ~l~gH~~~V~~v~~s~~~--~g~~l~s~s~D~~v~iWd~~~~~~~---~~~~~~~h-----~~~v~~v~~~p~~~g~~l~ 117 (297)
T 2pm7_B 48 TLTGHEGPVWRVDWAHPK--FGTILASCSYDGKVMIWKEENGRWS---QIAVHAVH-----SASVNSVQWAPHEYGPMLL 117 (297)
T ss_dssp EECCCSSCEEEEEECCGG--GCSEEEEEETTTEEEEEEBSSSCBC---CCEEECCC-----SSCEEEEEECCGGGCSEEE
T ss_pred EEccccCCeEEEEecCCC--cCCEEEEEcCCCEEEEEEcCCCceE---EEEEeecC-----CCceeEEEeCcCCCCcEEE
Confidence 457899999999998641 1368999999999999999754210 01112222 2346789999963 45778
Q ss_pred EEecccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCC----------CCCCcEEEEEcCCeEEEEeCCcccCC-ce
Q 017601 166 VARSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPV----------NGGPNMLAVTEGCQLTIWDLRMKENG-GC 232 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~----------~~~~~lla~s~d~~v~iwD~~~~~~~-~~ 232 (369)
++ +.|++|++||.... ........|...+..+.+.|.. +++..|++++.|++|+|||++++... ..
T Consensus 118 s~-s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~ 196 (297)
T 2pm7_B 118 VA-SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196 (297)
T ss_dssp EE-ETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred EE-ECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE
Confidence 77 89999999997532 1112222344445555443321 12457888999999999999876211 14
Q ss_pred eeeeeccCCCcEEEEEECCC---C-cEEEEeCCCcEEEEeCCCce---eeeec--cccccCceEEEEEcCCCCCEEEEEE
Q 017601 233 LHRICGSVGDILYAVCSSST---G-NIAVAGADRTVTIYDPRRWS---ALSRW--VHCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~---g-~lasgs~D~~v~vwD~~~~~---~~~~~--~~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
...+.+| ...|++++|+|+ + +||+|+.|++|+|||+++.. ....+ .+| ...|.+++|+| ++++|++++
T Consensus 197 ~~~l~~H-~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~-~g~~las~~ 273 (297)
T 2pm7_B 197 ESTLEGH-SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSL-SGNVLALSG 273 (297)
T ss_dssp EEEECCC-SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECS-SSCCEEEEE
T ss_pred EEEecCC-CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC-CCcEEEEEECC-CCCEEEEEc
Confidence 5567666 689999999998 5 89999999999999998742 11233 467 88999999999 999999999
Q ss_pred CCCeEEEEECcC
Q 017601 304 VDYEVFCGQWRE 315 (369)
Q Consensus 304 ~D~~i~vwd~~~ 315 (369)
.|++|++|+...
T Consensus 274 ~D~~v~lw~~~~ 285 (297)
T 2pm7_B 274 GDNKVTLWKENL 285 (297)
T ss_dssp TTSCEEEEEECT
T ss_pred CCCcEEEEEECC
Confidence 999999999864
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=222.40 Aligned_cols=204 Identities=11% Similarity=0.058 Sum_probs=147.7
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.+...+++++||||+ ....+|+++.++.|++||+.+.. ..+.+. +. ..+.+++|+|+ ..+++++ +
T Consensus 131 ~~~~~~~~v~fSpDg--~~la~as~~~d~~i~iwd~~~~~-----~~~~~~-~~-----~~V~~v~fspd-g~~l~s~-s 195 (365)
T 4h5i_A 131 NADDYTKLVYISREG--TVAAIASSKVPAIMRIIDPSDLT-----EKFEIE-TR-----GEVKDLHFSTD-GKVVAYI-T 195 (365)
T ss_dssp CTTCCEEEEEECTTS--SCEEEEESCSSCEEEEEETTTTE-----EEEEEE-CS-----SCCCEEEECTT-SSEEEEE-C
T ss_pred CcccCEEEEEEcCCC--CEEEEEECCCCCEEEEeECCCCc-----EEEEeC-CC-----CceEEEEEccC-CceEEec-c
Confidence 455678999999985 34556788889999999987551 122222 21 23568999994 5577777 6
Q ss_pred ccceEEEEeCC-c-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCC----eEEEEeCCcccCC-ceeeeeeccCCC
Q 017601 170 FSKSIDVYDQD-I-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC----QLTIWDLRMKENG-GCLHRICGSVGD 242 (369)
Q Consensus 170 ~d~~i~lwd~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~----~v~iwD~~~~~~~-~~~~~~~~~~~~ 242 (369)
.++ +.+|+.. . .........+...+..+. ++|++..+++++.|+ ++++||+...... .....+..+ ..
T Consensus 196 ~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~---fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~ 270 (365)
T 4h5i_A 196 GSS-LEVISTVTGSCIARKTDFDKNWSLSKIN---FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR-FK 270 (365)
T ss_dssp SSC-EEEEETTTCCEEEEECCCCTTEEEEEEE---EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS-CS
T ss_pred cee-EEEEEeccCcceeeeecCCCCCCEEEEE---EcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC-CC
Confidence 554 5555543 2 222221222333343333 234677888888776 6888998765210 112345555 68
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeee-ccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSR-WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~-~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
.|++++|+|+| +||+|+.|++|+|||+++++++.+ +.+| ...|++|+||| |+++|+|+|.|++|||||+..
T Consensus 271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 271 GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVTISP-DSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEEECT-TSCEEEEEETTSEEEEEECCT
T ss_pred CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence 89999999999 999999999999999999999987 4789 99999999999 999999999999999999965
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=245.68 Aligned_cols=251 Identities=12% Similarity=0.071 Sum_probs=186.8
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC-ceeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ-WSMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~~a~ 166 (369)
+.+|.+.|++++|+|++ ..+++++.+|.|++|++..... .....+..| ...+.+++|+|.. +..+++
T Consensus 5 l~gH~~~V~~l~~s~dg----~~latg~~dg~I~vwd~~~~~~---~~~~~l~~h-----~~~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYG----KRLATCSSDKTIKIFEVEGETH---KLIDTLTGH-----EGPVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp ---CCCCEEEECCCSSS----CCEEEEETTTEEEEEEEETTEE---EEEEEECCC-----SSCEEEEEECCTTSCSEEEE
T ss_pred cccCcceeEEEEECCCC----CeEEEEECCCcEEEEecCCCCC---ccceeccCC-----cCceEEEEecCCCCCCEEEE
Confidence 56899999999999984 6899999999999999974311 111223333 2346789999852 567888
Q ss_pred EecccceEEEEeCCcce--EEEEeeeCCcceeeeccCCCCCC--CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 167 ARSFSKSIDVYDQDIHL--RTLRTLWYPSSLNFVQNLSPVNG--GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~--~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
+ +.|++|++||..... .......+...+..+.+. |+ +..+++++.|++|++||++++... ....+..+ ..
T Consensus 73 ~-s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~s---p~~~~~~l~sgs~dg~I~vwdl~~~~~~-~~~~~~~~-~~ 146 (753)
T 3jro_A 73 C-SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA---PHEYGPLLLVASSDGKVSVVEFKENGTT-SPIIIDAH-AI 146 (753)
T ss_dssp E-ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC---CGGGCSEEEEEETTSEEEEEECCSSSCC-CCEEEECC-SS
T ss_pred E-eCCCeEEEEECCCCcccccccccCCCCCeEEEEEC---CCCCCCEEEEEeCCCcEEEEEeecCCCc-ceeEeecC-CC
Confidence 7 899999999975432 222222355556665543 34 678899999999999999977322 23334444 58
Q ss_pred cEEEEEECC-------------CC-cEEEEeCCCcEEEEeCCCc----eeeeeccccccCceEEEEEcCCC---CCEEEE
Q 017601 243 ILYAVCSSS-------------TG-NIAVAGADRTVTIYDPRRW----SALSRWVHCSKYEITGLSFSSID---SNYIYV 301 (369)
Q Consensus 243 ~v~~v~~sp-------------~g-~lasgs~D~~v~vwD~~~~----~~~~~~~~h~~~~v~~l~~sp~d---~~~l~s 301 (369)
.|++++|+| ++ .|++|+.||+|++||++++ .....+.+| ...|++++|+| + +.+|++
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp-~~~~~~~l~s 224 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSP-TVLLRSYLAS 224 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECC-CCSSSEEEEE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC-CCcEEEEEecc-CCCCCCEEEE
Confidence 999999999 47 9999999999999999876 566788899 99999999999 8 899999
Q ss_pred EECCCeEEEEECcCCc-----eeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 302 QGVDYEVFCGQWRESS-----KVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 302 ~s~D~~i~vwd~~~~~-----~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
++.|++|++||++++. ......+|... ..+...+++.+|++|+.||.|++||+.++.
T Consensus 225 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999999999998853 22222334411 244556799999999999999999998643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-26 Score=221.24 Aligned_cols=197 Identities=14% Similarity=0.165 Sum_probs=157.7
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCC----cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCC
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQD----IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLR 225 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~ 225 (369)
.+.+++|+|++..+++++ +.|++|+|||.. ...+.+....++..+..+.+ +|++..|++++.|+.+++||+.
T Consensus 104 ~v~~~~~s~d~~~l~~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~---sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACA-DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI---AEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CEEEEEECTTSSEEEEEE-GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE---CTTSSEEEEEETTSEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEE-CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEE---cCCCCEEEEEeCCCcEEEEecC
Confidence 478999999665545777 899999999975 34455544345555555553 3467788889999999999998
Q ss_pred cccCCc-eeeeeeccCCCcEEEEEECCC---C-cEEEEeCCCcEEEEeCCCceeeee-ccccccCceEEEEEcCCCCCEE
Q 017601 226 MKENGG-CLHRICGSVGDILYAVCSSST---G-NIAVAGADRTVTIYDPRRWSALSR-WVHCSKYEITGLSFSSIDSNYI 299 (369)
Q Consensus 226 ~~~~~~-~~~~~~~~~~~~v~~v~~sp~---g-~lasgs~D~~v~vwD~~~~~~~~~-~~~h~~~~v~~l~~sp~d~~~l 299 (369)
++.... ++..+.++ ...|++++|+|+ + +|++|+.|++|++||+++++.+.. +.+| ...|++++|+ ++++|
T Consensus 180 ~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~s--d~~~l 255 (450)
T 2vdu_B 180 SIPEEKFTQEPILGH-VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH-KHFVSSICCG--KDYLL 255 (450)
T ss_dssp SCCCSSCCCCCSEEC-SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC-SSCEEEEEEC--STTEE
T ss_pred Ccccccccceeeecc-cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC-CCceEEEEEC--CCCEE
Confidence 874322 33356655 589999999999 8 999999999999999999988877 5689 9999999999 89999
Q ss_pred EEEECCCeEEEEECcCCceeEEEEcCC--------------------------CeeeeeEcCCCCEEEEEe-CCCcEEEE
Q 017601 300 YVQGVDYEVFCGQWRESSKVFAFRGDS--------------------------NWLGFSKCSNRDVLGGWS-DSGSIFVA 352 (369)
Q Consensus 300 ~s~s~D~~i~vwd~~~~~~~~~~~g~~--------------------------~~~~~~~~~d~~~l~sgs-~dg~I~iW 352 (369)
++++.|++|++||+++++++..+..+. ....+..++++.+|++++ .|+.|++|
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 999999999999999999888886431 122344466899999999 89999999
Q ss_pred EC
Q 017601 353 DV 354 (369)
Q Consensus 353 d~ 354 (369)
++
T Consensus 336 ~~ 337 (450)
T 2vdu_B 336 EM 337 (450)
T ss_dssp EE
T ss_pred Ee
Confidence 99
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-26 Score=216.53 Aligned_cols=248 Identities=11% Similarity=0.088 Sum_probs=187.8
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceE
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSI 174 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i 174 (369)
++.|+||++ .+||.+- +++|++||..++.. .....+..| ...+++|+|+|+ +.++|++ +.|++|
T Consensus 108 ~~~l~wS~~-----n~lAvgl-d~tV~lWd~~tg~~---~~~~~~~~~-----~~~V~sv~fspd-g~~lasg-s~Dg~v 171 (420)
T 4gga_A 108 LNLVDWSSG-----NVLAVAL-DNSVYLWSASSGDI---LQLLQMEQP-----GEYISSVAWIKE-GNYLAVG-TSSAEV 171 (420)
T ss_dssp CBCEEECTT-----SEEEEEE-TTEEEEEETTTCCE---EEEEECCST-----TCCEEEEEECTT-SSEEEEE-ETTSCE
T ss_pred ceeEEECCC-----CEEEEEe-CCEEEEEECCCCCE---EEEEEecCC-----CCcEEEEEECCC-CCEEEEE-ECCCeE
Confidence 578999975 3666654 78999999986521 111222222 123779999994 5678888 899999
Q ss_pred EEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-
Q 017601 175 DVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG- 253 (369)
Q Consensus 175 ~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g- 253 (369)
+|||............|...+..+.+ ++..+++++.|+.+++||.+... ..+..+.++ ...+..+.|+|++
T Consensus 172 ~iWd~~~~~~~~~~~~h~~~v~~~s~-----~~~~l~sgs~d~~i~~~d~~~~~--~~~~~~~~h-~~~~~~~~~~~~g~ 243 (420)
T 4gga_A 172 QLWDVQQQKRLRNMTSHSARVGSLSW-----NSYILSSGSRSGHIHHHDVRVAE--HHVATLSGH-SQEVCGLRWAPDGR 243 (420)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTSSS--CEEEEEECC-SSCEEEEEECTTSS
T ss_pred EEEEcCCCcEEEEEeCCCCceEEEee-----CCCEEEEEeCCCceeEeeecccc--eeeEEeccc-ccceeeeeecCCCC
Confidence 99998643332222334444544442 35678889999999999998763 566677766 6899999999999
Q ss_pred cEEEEeCCCcEEEEeCCCce----eeeeccccccCceEEEEEcCCCCCEEEEE--ECCCeEEEEECcCCceeEEEEcCCC
Q 017601 254 NIAVAGADRTVTIYDPRRWS----ALSRWVHCSKYEITGLSFSSIDSNYIYVQ--GVDYEVFCGQWRESSKVFAFRGDSN 327 (369)
Q Consensus 254 ~lasgs~D~~v~vwD~~~~~----~~~~~~~h~~~~v~~l~~sp~d~~~l~s~--s~D~~i~vwd~~~~~~~~~~~g~~~ 327 (369)
.+++++.|+.|++||.++++ .+.....| ...|.+++|+|.++.+++++ +.|++|++||+.++++...+..|..
T Consensus 244 ~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~-~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~ 322 (420)
T 4gga_A 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 322 (420)
T ss_dssp EEEEEETTSCEEEEESSCCSSCSCCSEEECCC-SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC
T ss_pred eeeeeeccccceEEeeccccccceeeeeeccc-CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc
Confidence 99999999999999998764 34567788 89999999999666777764 4799999999999999999988885
Q ss_pred eeeeeEcCCCCEEEEEe--CCCcEEEEECCCCcchhhhcccCC
Q 017601 328 WLGFSKCSNRDVLGGWS--DSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 328 ~~~~~~~~d~~~l~sgs--~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
...+...+++..+++++ .|+.|+|||+.+++ .+..+.||.
T Consensus 323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~-~v~~l~gH~ 364 (420)
T 4gga_A 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELKGHT 364 (420)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-EEEEECCCS
T ss_pred eeeeeecCCCCeEEEEEecCCCEEEEEECCCCc-EEEEEcCCC
Confidence 55666677888877665 79999999999886 456777775
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-27 Score=218.17 Aligned_cols=250 Identities=11% Similarity=0.034 Sum_probs=183.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|++++|+|++ .++..+++++.+|.|++|++......+ ...+..| ...+.+++|+| +..+++++
T Consensus 35 ~~~h~~~v~~~~~~~~~-~~g~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~h-----~~~v~~~~~~~-~~~~l~s~ 104 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPT-LPGNFLIAGSWANDVRCWEVQDSGQTI---PKAQQMH-----TGPVLDVCWSD-DGSKVFTA 104 (368)
T ss_dssp SSCCSSCEEEEEECCTT-SSSEEEEEEETTSEEEEEEECTTSCEE---EEEEEEC-----SSCEEEEEECT-TSSEEEEE
T ss_pred ccCCCCceEEEEEcCCC-CCceEEEEECCCCcEEEEEcCCCCcee---EEEeccc-----cCCEEEEEECc-CCCEEEEE
Confidence 56899999999999972 113799999999999999998632211 1122223 23467899999 55577877
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC-------
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV------- 240 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~------- 240 (369)
+.|+.|++||...... .....+...+..+.+.+ ++++..|++++.|++|++||++++ +++..+..+.
T Consensus 105 -~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~ 178 (368)
T 3mmy_A 105 -SCDKTAKMWDLSSNQA-IQIAQHDAPVKTIHWIK-APNYSCVMTGSWDKTLKFWDTRSS---NPMMVLQLPERCYCADV 178 (368)
T ss_dssp -ETTSEEEEEETTTTEE-EEEEECSSCEEEEEEEE-CSSCEEEEEEETTSEEEEECSSCS---SCSEEEECSSCEEEEEE
T ss_pred -cCCCcEEEEEcCCCCc-eeeccccCceEEEEEEe-CCCCCEEEEccCCCcEEEEECCCC---cEEEEEecCCCceEEEe
Confidence 8999999999864322 12333555555544311 245667888999999999999987 5555444330
Q ss_pred ---------------------------------CCcEEEEEECCCC-c----EEEEeCCCcEEEEeCCCc---eeeeecc
Q 017601 241 ---------------------------------GDILYAVCSSSTG-N----IAVAGADRTVTIYDPRRW---SALSRWV 279 (369)
Q Consensus 241 ---------------------------------~~~v~~v~~sp~g-~----lasgs~D~~v~vwD~~~~---~~~~~~~ 279 (369)
...+.++++.++. . +++|+.|+.|++||++.. ..+..+.
T Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 179 IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 1234455554444 3 999999999999999986 5677788
Q ss_pred ccccC------------ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCC
Q 017601 280 HCSKY------------EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDS 346 (369)
Q Consensus 280 ~h~~~------------~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~d 346 (369)
+| .. .|++++|+| ++++|++++.|+.|++||+++++++..+.+|... ..+..++++.+|++++.|
T Consensus 259 ~~-~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 259 CH-RSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp CS-EEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred ee-ecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 87 55 799999999 9999999999999999999999999999988732 344447799999999999
Q ss_pred CcEEEEECC
Q 017601 347 GSIFVADVV 355 (369)
Q Consensus 347 g~I~iWd~~ 355 (369)
+..+.|++-
T Consensus 337 ~~~~~~~~~ 345 (368)
T 3mmy_A 337 DWSKGHEFY 345 (368)
T ss_dssp CSTTCGGGC
T ss_pred ccccccccc
Confidence 866555543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=221.89 Aligned_cols=244 Identities=7% Similarity=0.050 Sum_probs=173.4
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCC-----c---c----------ccc----------------c
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDV-----D---R----------LTY----------------S 138 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~-----~---~----------~~~----------------~ 138 (369)
+.|++++|+|++ ....+++++.+|.|++|++....... . + ... .
T Consensus 94 ~~V~~l~~~~~~--~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 94 EKINKIRWLPQK--NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp CCCCEEEECCCC--SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred CceEEEEEcCCC--CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 889999999973 12578888999999999987531100 0 0 000 0
Q ss_pred -ccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEe--------eeCCcceeeeccCCCCCCC-C
Q 017601 139 -VLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRT--------LWYPSSLNFVQNLSPVNGG-P 208 (369)
Q Consensus 139 -~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~-~ 208 (369)
...| ...+.+++|+|+ +.+++++ .|++|++||.......+.. ..+...+..+.+. |++ .
T Consensus 172 ~~~~h-----~~~v~~~~~~~~-~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~ 240 (447)
T 3dw8_B 172 FANAH-----TYHINSISINSD-YETYLSA--DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH---PNSCN 240 (447)
T ss_dssp ECSCC-----SSCCCEEEECTT-SSEEEEE--CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC---SSCTT
T ss_pred eccCC-----CcceEEEEEcCC-CCEEEEe--CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC---CCCCc
Confidence 1112 234668999994 5567776 5999999999743333332 1244445555543 455 6
Q ss_pred cEEEEEcCCeEEEEeCCcccC-CceeeeeeccCCC------------cEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ce
Q 017601 209 NMLAVTEGCQLTIWDLRMKEN-GGCLHRICGSVGD------------ILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WS 273 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~-~~~~~~~~~~~~~------------~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~ 273 (369)
.|++++.|++|++||+++++. ...+..+..+ .. .|++++|+|+| +|++++. ++|++||+++ ++
T Consensus 241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~ 318 (447)
T 3dw8_B 241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEP-EDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR 318 (447)
T ss_dssp EEEEEETTSCEEEEETTTCSSSCTTCEEECCC------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS
T ss_pred EEEEEeCCCeEEEEECcCCccccceeeEeccC-CCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc
Confidence 888899999999999998731 0115666665 33 89999999999 9999998 9999999998 88
Q ss_pred eeeeccccccCc---------------eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC------------
Q 017601 274 ALSRWVHCSKYE---------------ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS------------ 326 (369)
Q Consensus 274 ~~~~~~~h~~~~---------------v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~------------ 326 (369)
++..+.+| ... +..++|+| ++++|++++.|+.|++||+++++.+ .+.+|.
T Consensus 319 ~~~~~~~~-~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~ 395 (447)
T 3dw8_B 319 PVETYQVH-EYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPR 395 (447)
T ss_dssp CSCCEESC-GGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCC
T ss_pred ccceeecc-ccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCc
Confidence 89999888 532 33499999 9999999999999999999987765 333331
Q ss_pred ----------------------CeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 327 ----------------------NWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 327 ----------------------~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
....+...|++.+||+++.++ +++|..+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 396 KVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 112344567999999998876 7888654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=249.15 Aligned_cols=292 Identities=13% Similarity=0.097 Sum_probs=206.7
Q ss_pred CCeEEEEEEeCCchhh-hcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCC
Q 017601 50 GCHLYKLQVMMDDWFV-SEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTS 128 (369)
Q Consensus 50 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~ 128 (369)
...|+.+++...+..+ ..+.++....++..... ....+.+|.+.|.+++|+|++ ..+++++.+|.|++||+.++
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~----~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDD----SYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEETTTC
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCC----CEEEEEeCCCeEEEEECCCC
Confidence 3445566666666555 33445544443433332 233456899999999999984 68999999999999999865
Q ss_pred CCCCccccccccCCCCCCCCCCeeEEEECCCCce-eEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCC
Q 017601 129 GKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS-MAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGG 207 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~-~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 207 (369)
. ....+..|. ..+.+++|+|.+.. +++++ +.|+.|++||............|...+..+.+ +|++
T Consensus 690 ~-----~~~~~~~~~-----~~v~~~~~~~~~~~~~l~sg-~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~---sp~~ 755 (1249)
T 3sfz_A 690 K-----LVHTYDEHS-----EQVNCCHFTNKSNHLLLATG-SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF---SPDD 755 (1249)
T ss_dssp C-----EEEEEECCS-----SCEEEEEECSSSSCCEEEEE-ETTSCEEEEETTSSSEEEEECCCSSCEEEEEE---CSST
T ss_pred c-----eEEEEcCCC-----CcEEEEEEecCCCceEEEEE-eCCCeEEEEECCCcchhheecCCCCCEEEEEE---ecCC
Confidence 2 112223332 34668999996444 45555 89999999998643322222335555555553 3467
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeee----------------------------------------------------
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHR---------------------------------------------------- 235 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~---------------------------------------------------- 235 (369)
..+++++.|++|++||++++ .....
T Consensus 756 ~~l~s~s~dg~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 756 ELLASCSADGTLRLWDVRSA---NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832 (1249)
T ss_dssp TEEEEEESSSEEEEEEGGGT---EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE
T ss_pred CEEEEEECCCeEEEEeCCCC---cccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce
Confidence 78999999999999999765 22211
Q ss_pred --ee-ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 236 --IC-GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 236 --~~-~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
+. .+ ...|.+++|+|++ .+++|+.|++|++||+.++..+..+.+| ...|++++|+| ++++|++++.|++|++|
T Consensus 833 ~~~~~~~-~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~v~~sp-dg~~l~s~s~dg~v~vw 909 (1249)
T 3sfz_A 833 AEIHTGH-HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH-LSWVHGVMFSP-DGSSFLTASDDQTIRVW 909 (1249)
T ss_dssp EEEECSS-SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC-SSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred eEEcCCC-CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC-ccceEEEEECC-CCCEEEEEeCCCeEEEE
Confidence 11 22 4778999999999 9999999999999999999999999999 99999999999 99999999999999999
Q ss_pred ECcCCc-----------------------------eeEEEEc---------CCCeeeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 312 QWRESS-----------------------------KVFAFRG---------DSNWLGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 312 d~~~~~-----------------------------~~~~~~g---------~~~~~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
|+.+.. ....+.+ ......+..++++.++++|+.||.|++||
T Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d 989 (1249)
T 3sfz_A 910 ETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE 989 (1249)
T ss_dssp EHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEE
T ss_pred EccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 975310 0011111 11112333466999999999999999999
Q ss_pred CCCCcchhhhcccC
Q 017601 354 VVAKENEISALKGL 367 (369)
Q Consensus 354 ~~~~~~~~~~l~g~ 367 (369)
+.+++. ...+.+|
T Consensus 990 ~~~~~~-~~~~~~h 1002 (1249)
T 3sfz_A 990 LPNNRV-FSSGVGH 1002 (1249)
T ss_dssp TTTTSC-EEECCCC
T ss_pred cCCCce-eeecccC
Confidence 988753 3334444
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-26 Score=219.61 Aligned_cols=235 Identities=14% Similarity=0.158 Sum_probs=185.9
Q ss_pred cCCcccee-eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 88 RCPHRSEV-QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 88 ~~~H~~~V-~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
+.+|.+.| .++.+ ++ ..+++++.+|.|++||+.++. ....+..|. +.+.+++|++ ..+++
T Consensus 114 l~~h~~~v~~~~~~--~g----~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~-----~~v~~~~~~~---~~l~s 174 (445)
T 2ovr_B 114 LKGHDDHVITCLQF--CG----NRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHT-----GGVWSSQMRD---NIIIS 174 (445)
T ss_dssp EECSTTSCEEEEEE--ET----TEEEEEETTSCEEEEETTTCC-----EEEECCCCS-----SCEEEEEEET---TEEEE
T ss_pred ecccCCCcEEEEEE--cC----CEEEEEECCCcEEEEECCCCc-----EEEEEcCCC-----CCEEEEEecC---CEEEE
Confidence 56888875 55555 42 589999999999999997552 122233332 3466899974 47787
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+ +.|++|++||............+...+..+.+ ++..+++++.|++|++||++++ +++..+..+ ...|++
T Consensus 175 ~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-----~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~-~~~v~~ 244 (445)
T 2ovr_B 175 G-STDRTLKVWNAETGECIHTLYGHTSTVRCMHL-----HEKRVVSGSRDATLRVWDIETG---QCLHVLMGH-VAAVRC 244 (445)
T ss_dssp E-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-----ETTEEEEEETTSEEEEEESSSC---CEEEEEECC-SSCEEE
T ss_pred E-eCCCeEEEEECCcCcEEEEECCCCCcEEEEEe-----cCCEEEEEeCCCEEEEEECCCC---cEEEEEcCC-cccEEE
Confidence 7 89999999998643322222234445555543 2468999999999999999988 788888766 689999
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD 325 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~ 325 (369)
++| ++ .+++|+.|++|++||+++++++.++.+| ...|.++.| ++.++++++.|+.|++||+++++++..+.+|
T Consensus 245 ~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 318 (445)
T 2ovr_B 245 VQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGH-TNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318 (445)
T ss_dssp EEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCC-SSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred EEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCC-CCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC
Confidence 999 67 9999999999999999999999999999 999999999 5689999999999999999999999999988
Q ss_pred CCeeeeeE-cCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 326 SNWLGFSK-CSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 326 ~~~~~~~~-~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.. .+.. ..++.+|++|+.||.|++||+++++.
T Consensus 319 ~~--~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 351 (445)
T 2ovr_B 319 QS--LTSGMELKDNILVSGNADSTVKIWDIKTGQC 351 (445)
T ss_dssp CS--CEEEEEEETTEEEEEETTSCEEEEETTTCCE
T ss_pred cc--cEEEEEEeCCEEEEEeCCCeEEEEECCCCcE
Confidence 73 2222 23788999999999999999988763
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=227.84 Aligned_cols=246 Identities=15% Similarity=0.153 Sum_probs=190.9
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCC-eeEEEECC--CCceeEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGS-WSGLCFSP--SQWSMAA 165 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~p--~~~~~~a 165 (369)
..|++.|.+++|+|++ .++++++ ++.+.+|++.++.... .....+..|. .. +.+++|+| ++ .+++
T Consensus 15 ~~~~~~v~~~~~spdg----~~l~~~~-~~~v~v~~~~~~~~~~-~~~~~~~~h~-----~~~v~~~~~sp~~~~-~~l~ 82 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTT----NAIAYPC-GKSAFVRCLDDGDSKV-PPVVQFTGHG-----SSVVTTVKFSPIKGS-QYLC 82 (615)
T ss_dssp CCCTTCCCCCEEETTT----TEEEEEE-TTEEEEEECCSSCCSS-CSEEEECTTT-----TSCEEEEEECSSTTC-CEEE
T ss_pred CCccCceeEEEECCCC----CEEEEec-CCeEEEEECCCCCCcc-ccceEEecCC-----CceEEEEEECcCCCC-CEEE
Confidence 4689999999999984 5666666 6899999998542111 1122233332 34 67899999 54 4777
Q ss_pred EEecccceEEEEeCCcc-------eEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcC----CeEEEEeCCcccCCcee
Q 017601 166 VARSFSKSIDVYDQDIH-------LRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEG----CQLTIWDLRMKENGGCL 233 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d----~~v~iwD~~~~~~~~~~ 233 (369)
++ +.|++|++||.... ....... .+...+..+.+ ++++..+++++.+ +.|.+|| ++ +.+
T Consensus 83 s~-~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~~~~~~~~v~~~d--~~---~~~ 153 (615)
T 1pgu_A 83 SG-DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW---DFEGRRLCVVGEGRDNFGVFISWD--SG---NSL 153 (615)
T ss_dssp EE-ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE---CTTSSEEEEEECCSSCSEEEEETT--TC---CEE
T ss_pred Ee-cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEE---eCCCCEEEEeccCCCCccEEEEEE--CC---Ccc
Confidence 77 88999999998421 1222222 24455555553 3567788888877 6899998 34 567
Q ss_pred eeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccC---ceEEEEEcCCC-CCEEEEEECCCe
Q 017601 234 HRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKY---EITGLSFSSID-SNYIYVQGVDYE 307 (369)
Q Consensus 234 ~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~---~v~~l~~sp~d-~~~l~s~s~D~~ 307 (369)
..+..+ ...|++++|+|++ .+++++.|++|++||+++++.+..+.+| .. .|++++|+| + +++|++++.|+.
T Consensus 154 ~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 154 GEVSGH-SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH-HKQGSFVRDVEFSP-DSGEFVITVGSDRK 230 (615)
T ss_dssp EECCSC-SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS-SCTTCCEEEEEECS-TTCCEEEEEETTCC
T ss_pred eeeecC-CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeeccc-CCCCceEEEEEECC-CCCCEEEEEeCCCe
Confidence 777766 6899999999999 7999999999999999999999999999 88 999999999 8 999999999999
Q ss_pred EEEEECcCCceeEEE-E---cCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 308 VFCGQWRESSKVFAF-R---GDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 308 i~vwd~~~~~~~~~~-~---g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
|++||+++++.+..+ . +|.. ...+... ++.+|++++.||.|++||+++++.
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence 999999999999988 5 6762 2234446 899999999999999999988753
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=219.50 Aligned_cols=251 Identities=14% Similarity=0.103 Sum_probs=185.0
Q ss_pred cCCccceeeEEEEee-cCCCCceEEEEEecCCcEEEEEecCCCCCC--ccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 88 RCPHRSEVQSIALAE-TDSSGYMVLGSVDSYGHLIVSKLDTSGKDV--DRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~-~~~~~~~~las~d~~g~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
+.+|.+.|.+++|+| + ..++++++.+|.|++|++....... ......+..|. ..+.+++|+|++..++
T Consensus 77 ~~~h~~~V~~~~~~p~~----~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~p~~~~~l 147 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHN----DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT-----KRVGIVAWHPTAQNVL 147 (402)
T ss_dssp BCCCSSCEEEEEECTTC----TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS-----SCEEEEEECSSBTTEE
T ss_pred EecCCCCEEEEEeCCCC----CCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC-----CeEEEEEECcCCCCEE
Confidence 568999999999999 5 3699999999999999998652110 01112222232 3467899999765688
Q ss_pred EEEecccceEEEEeCCcceEEEEe--eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee-eccCC
Q 017601 165 AVARSFSKSIDVYDQDIHLRTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI-CGSVG 241 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~-~~~~~ 241 (369)
+++ +.|++|++||.......... ..+...+..+.+. +++..|++++.|++|++||++++ +.+..+ ..+..
T Consensus 148 ~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~ 220 (402)
T 2aq5_A 148 LSA-GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS---RDGALICTSCRDKRVRVIEPRKG---TVVAEKDRPHEG 220 (402)
T ss_dssp EEE-ETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC---TTSSCEEEEETTSEEEEEETTTT---EEEEEEECSSCS
T ss_pred EEE-cCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC---CCCCEEEEEecCCcEEEEeCCCC---ceeeeeccCCCC
Confidence 888 89999999998644322222 2355556555543 46778999999999999999988 777777 45423
Q ss_pred CcEEEEEECCCC-cEEEE---eCCCcEEEEeCCCcee-eeecc-ccccCceEEEEEcCCCCCEEEE-EECCCeEEEEECc
Q 017601 242 DILYAVCSSSTG-NIAVA---GADRTVTIYDPRRWSA-LSRWV-HCSKYEITGLSFSSIDSNYIYV-QGVDYEVFCGQWR 314 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasg---s~D~~v~vwD~~~~~~-~~~~~-~h~~~~v~~l~~sp~d~~~l~s-~s~D~~i~vwd~~ 314 (369)
..+.+++|+|++ +|++| +.|+.|++||+++++. +.... .| ...+.+++|+| ++++|++ ++.|+.|++||+.
T Consensus 221 ~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~-~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 221 TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT-SSGVLLPFFDP-DTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC-CSSCEEEEEET-TTTEEEEEETTCSCEEEEEEC
T ss_pred CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC-CCceeEEEEcC-CCCEEEEEEcCCCeEEEEEec
Confidence 348999999999 88898 7999999999998654 33333 45 67899999999 9999875 4579999999999
Q ss_pred CCce-eEEEEcC---CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 315 ESSK-VFAFRGD---SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 315 ~~~~-~~~~~g~---~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+++. +..+..| ....++...+++.++++ .++.+++|++.+++
T Consensus 299 ~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 299 SEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp SSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred CCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 8763 4444332 22345556778887764 57799999998764
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=208.63 Aligned_cols=183 Identities=10% Similarity=-0.006 Sum_probs=132.1
Q ss_pred eeEEEE-ecccceEEEEeCC---cceEEEEeeeCC-cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee
Q 017601 162 SMAAVA-RSFSKSIDVYDQD---IHLRTLRTLWYP-SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 162 ~~~a~~-~s~d~~i~lwd~~---~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
.++.++ .+.|+.|++|+.. +.+..+...... ..+.|.. ...++..|++++.|++|+|||++++ ++++++
T Consensus 146 ~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~---~~g~~~~LaSgS~D~TIkIWDl~TG---k~l~tL 219 (356)
T 2w18_A 146 RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAE---VQGMQEALLGTTIMNNIVIWNLKTG---QLLKKM 219 (356)
T ss_dssp EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEE---EETSTTEEEEEETTSEEEEEETTTC---CEEEEE
T ss_pred cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeec---cCCCCceEEEecCCCcEEEEECCCC---cEEEEE
Confidence 344442 2469999999973 333333332222 2223332 1124568888999999999999999 899998
Q ss_pred eccC--CCcEEEEEECCCC-cE------------EEEeCCCcEEEEeCCCceeeeec-----cccccCceEEEEEcCCCC
Q 017601 237 CGSV--GDILYAVCSSSTG-NI------------AVAGADRTVTIYDPRRWSALSRW-----VHCSKYEITGLSFSSIDS 296 (369)
Q Consensus 237 ~~~~--~~~v~~v~~sp~g-~l------------asgs~D~~v~vwD~~~~~~~~~~-----~~h~~~~v~~l~~sp~d~ 296 (369)
.++. ...+.+++|+|+| ++ ++|+.|++|++||..+++.+..+ .+| ...+.+..+ ++
T Consensus 220 ~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh-~~~~lsg~~---sg 295 (356)
T 2w18_A 220 HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQ-AGRFLEGDV---KD 295 (356)
T ss_dssp ECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTC-CCCEEEEEE---ET
T ss_pred cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCC-cceeEcccc---CC
Confidence 7431 2467788999999 54 67899999999999999887765 477 666554444 46
Q ss_pred CEEEEEECCCeEEEEECcCCceeEEEEcCCCe-e-eeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 297 NYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW-L-GFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 297 ~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~-~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
.++++++.|++|+|||+.+++++.++.+|... . .+..+|||++|+||+.|++|+|||+
T Consensus 296 ~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 296 HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 89999999999999999999999999988631 2 2456789999999999999999996
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-25 Score=209.57 Aligned_cols=238 Identities=10% Similarity=0.014 Sum_probs=166.3
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
...+|.+.|++++|+||+ .++|+++.+| +++|++.+... .+... . .++..+++.+....++++
T Consensus 14 ~~~~h~~~V~~v~fs~dg----~~la~g~~~~-~~iw~~~~~~~-----~~~~~--~-----~~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQ----SCLILSTLKS-FEIYNVHPVAH-----IMSQE--M-----RHLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp -----CCCCCEEEECTTS----SEEEEECSSE-EEEEEETTEEE-----EEEEE--C-----SCCCEEEECTTSSEEEEE
T ss_pred ccccCCCceEEEEECCCC----CEEEEEcCCE-EEEEecCCcce-----eeeee--c-----CCeEEEEEcCCCCEEEEE
Confidence 346899999999999984 6888887775 78999874311 11111 0 123468888855544444
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+ +.|++|+|||....... ....+...+..+.. ++ ..++++.|++|++||++++. +.+..+.. +...
T Consensus 77 ~-~~d~~v~iWd~~~~~~~-~~~~~~~~v~~v~~---~~---~~~~~~~~~~i~i~d~~~~~--~~~~~~~~----~~~~ 142 (355)
T 3vu4_A 77 T-GVKEVVHIWDDVKKQDV-SRIKVDAPVKDLFL---SR---EFIVVSYGDVISVFKFGNPW--KRITDDIR----FGGV 142 (355)
T ss_dssp C-SSTTEEEEEETTTTEEE-EEEECSSCEEEEEE---CS---SEEEEEETTEEEEEESSTTC--CBSSCCEE----EEEE
T ss_pred E-CCccEEEEEECCCCcEE-EEEECCCceEEEEE---cC---CEEEEEEcCEEEEEECCCCc--eeeEEecc----CCce
Confidence 5 88899999998533221 12234445555443 12 23444568899999998762 23333332 3344
Q ss_pred EEECCCCcEEE--EeCCCcEEEEeCCCce---------------e-eeeccccccCceEEEEEcCCCCCEEEEEECCCe-
Q 017601 247 VCSSSTGNIAV--AGADRTVTIYDPRRWS---------------A-LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE- 307 (369)
Q Consensus 247 v~~sp~g~las--gs~D~~v~vwD~~~~~---------------~-~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~- 307 (369)
+++++ ..++. |+.||+|++||+++++ + +..+.+| ...|++++|+| ++++|++++.|++
T Consensus 143 ~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-~~~v~~~~~s~-~g~~l~s~s~d~~~ 219 (355)
T 3vu4_A 143 CEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-TNPIKMVRLNR-KSDMVATCSQDGTI 219 (355)
T ss_dssp EEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCC-SSCEEEEEECT-TSSEEEEEETTCSE
T ss_pred EEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc-CCceEEEEECC-CCCEEEEEeCCCCE
Confidence 56777 63333 7899999999999865 2 7788999 99999999999 9999999999998
Q ss_pred EEEEECcCCceeEEEE-c-CCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 308 VFCGQWRESSKVFAFR-G-DSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~-g-~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|++||+++++++..+. | |.. ...+..++++.+|++++.|++|++||++++.
T Consensus 220 v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 220 IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9999999999999998 6 762 2344557799999999999999999998653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=213.62 Aligned_cols=215 Identities=15% Similarity=0.063 Sum_probs=153.1
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC-ceeEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ-WSMAA 165 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~~a 165 (369)
.+.+|.+.|++++|+++. ...+|++++.+++|++||+.++.. .....+..|.. .+.+++|+|+. ..+++
T Consensus 52 ~l~gH~~~V~~v~~~~~~--~~~~l~s~s~D~~v~iWd~~~~~~---~~~~~~~~h~~-----~V~~v~~~p~~~g~~la 121 (316)
T 3bg1_A 52 DLRGHEGPVWQVAWAHPM--YGNILASCSYDRKVIIWREENGTW---EKSHEHAGHDS-----SVNSVCWAPHDYGLILA 121 (316)
T ss_dssp EEECCSSCEEEEEECCGG--GSSCEEEEETTSCEEEECCSSSCC---CEEEEECCCSS-----CCCEEEECCTTTCSCEE
T ss_pred EEcCCCccEEEEEeCCCC--CCCEEEEEECCCEEEEEECCCCcc---eEEEEccCCCC-----ceEEEEECCCCCCcEEE
Confidence 356899999999998631 136899999999999999875411 11122233332 35589999964 45778
Q ss_pred EEecccceEEEEeCCcc--eEEEEee-eCCcceeeeccCCCC--------------CCCCcEEEEEcCCeEEEEeCCccc
Q 017601 166 VARSFSKSIDVYDQDIH--LRTLRTL-WYPSSLNFVQNLSPV--------------NGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~--~~~~~~~-~~~~~v~~~~~~~~~--------------~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
++ +.|++|++||.... ....... .|...+..+.+.|.. +++..|++++.|++|+|||++...
T Consensus 122 sg-s~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~ 200 (316)
T 3bg1_A 122 CG-SSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG 200 (316)
T ss_dssp EE-CSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS
T ss_pred EE-cCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC
Confidence 77 99999999997532 1111111 122223233222211 113578889999999999997542
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-----cEEEEeCCCcEEEEeCCCc---e-eeeeccccccCceEEEEEcCCCCCEE
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-----NIAVAGADRTVTIYDPRRW---S-ALSRWVHCSKYEITGLSFSSIDSNYI 299 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-----~lasgs~D~~v~vwD~~~~---~-~~~~~~~h~~~~v~~l~~sp~d~~~l 299 (369)
...++..+.+| ...|++++|+|++ +||+|+.|++|++||+++. + ....+.+| ...|.+++|+| ++++|
T Consensus 201 ~~~~~~~l~~h-~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp-~g~~l 277 (316)
T 3bg1_A 201 QWKEEQKLEAH-SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSI-TANIL 277 (316)
T ss_dssp CEEEEECCBCC-SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECT-TTCCE
T ss_pred ccceeeecccC-CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcC-CCCEE
Confidence 22355667766 6899999999984 7999999999999998762 1 23345678 89999999999 99999
Q ss_pred EEEECCCeEEEEECcC
Q 017601 300 YVQGVDYEVFCGQWRE 315 (369)
Q Consensus 300 ~s~s~D~~i~vwd~~~ 315 (369)
++++.|++|++|+...
T Consensus 278 as~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 278 AVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEESSSCEEEEEECT
T ss_pred EEEcCCCeEEEEEECC
Confidence 9999999999999763
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-26 Score=233.10 Aligned_cols=247 Identities=9% Similarity=-0.039 Sum_probs=189.3
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|.+++|+|++ ..+++++.+|.|++|++.++. ....+..|. ..+.+++|+|++ ..++++
T Consensus 51 ~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~-----~~v~~~~~s~~~-~~l~~~ 115 (814)
T 3mkq_A 51 IQVTETPVRAGKFIARK----NWIIVGSDDFRIRVFNYNTGE-----KVVDFEAHP-----DYIRSIAVHPTK-PYVLSG 115 (814)
T ss_dssp EECCSSCEEEEEEEGGG----TEEEEEETTSEEEEEETTTCC-----EEEEEECCS-----SCEEEEEECSSS-SEEEEE
T ss_pred EecCCCcEEEEEEeCCC----CEEEEEeCCCeEEEEECCCCc-----EEEEEecCC-----CCEEEEEEeCCC-CEEEEE
Confidence 45799999999999983 789999999999999997652 112223232 346789999954 467777
Q ss_pred ecccceEEEEeCCcceEEEEe-eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRT-LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+.|++|++||.......... ..+...+..+.+.| .++..+++++.|++|++||++++ .....+..+....+.+
T Consensus 116 -~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~~v~~ 189 (814)
T 3mkq_A 116 -SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP--KDPSTFASGCLDRTVKVWSLGQS---TPNFTLTTGQERGVNY 189 (814)
T ss_dssp -ETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET--TEEEEEEEEETTSEEEEEETTCS---SCSEEEECCCTTCCCE
T ss_pred -cCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc--CCCCEEEEEeCCCeEEEEECCCC---cceeEEecCCCCCEEE
Confidence 89999999998643222222 22444444444322 14568888999999999999887 5555555442478999
Q ss_pred EEECC--CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 247 VCSSS--TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 247 v~~sp--~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
++|+| ++ .|++|+.|++|++||+++++.+.++.+| ...|++++|+| ++.+|++++.|+.|++||+.+++....+.
T Consensus 190 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 267 (814)
T 3mkq_A 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLN 267 (814)
T ss_dssp EEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC-SSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee
Confidence 99999 88 9999999999999999999999999999 99999999999 99999999999999999999999999998
Q ss_pred cCCC-eeeeeEcCCCC--EEEEEeCCCcEEEEECCCCc
Q 017601 324 GDSN-WLGFSKCSNRD--VLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 324 g~~~-~~~~~~~~d~~--~l~sgs~dg~I~iWd~~~~~ 358 (369)
.|.. ...+...+++. ++++++ ++.+.+|++....
T Consensus 268 ~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 268 VGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDE 304 (814)
T ss_dssp CSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCS
T ss_pred cCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCC
Confidence 7752 23344466765 455555 6668889876543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-26 Score=213.74 Aligned_cols=241 Identities=14% Similarity=0.122 Sum_probs=152.0
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCc--eeEEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQW--SMAAV 166 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~--~~~a~ 166 (369)
.+|.+.|.+++|+|++ ..++++++.+|.|++||+..... ...+. + ...+.+++|+|... .++++
T Consensus 96 ~~~~~~v~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~ 161 (408)
T 4a11_B 96 DVHRYSVETVQWYPHD---TGMFTSSSFDKTLKVWDTNTLQT-----ADVFN-F-----EETVYSHHMSPVSTKHCLVAV 161 (408)
T ss_dssp TCCSSCEEEEEECTTC---TTCEEEEETTSEEEEEETTTTEE-----EEEEE-C-----SSCEEEEEECSSCSSCCEEEE
T ss_pred ccCCCcEEEEEEccCC---CcEEEEEeCCCeEEEeeCCCCcc-----ceecc-C-----CCceeeeEeecCCCCCcEEEE
Confidence 4699999999999953 46888999999999999985411 11111 1 12355788988543 36777
Q ss_pred EecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCc-EEEEEcCCeEEEEeCCcccCCceeeee-------
Q 017601 167 ARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPN-MLAVTEGCQLTIWDLRMKENGGCLHRI------- 236 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~-lla~s~d~~v~iwD~~~~~~~~~~~~~------- 236 (369)
+ +.|+.|++||... ....+. .+...+..+.+. |++.. +++++.|+.|++||++++. .++..+
T Consensus 162 ~-~~~~~v~~~d~~~~~~~~~~~--~~~~~v~~~~~~---~~~~~ll~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~ 233 (408)
T 4a11_B 162 G-TRGPKVQLCDLKSGSCSHILQ--GHRQEILAVSWS---PRYDYILATASADSRVKLWDVRRAS--GCLITLDQHNGKK 233 (408)
T ss_dssp E-ESSSSEEEEESSSSCCCEEEC--CCCSCEEEEEEC---SSCTTEEEEEETTSCEEEEETTCSS--CCSEECCTTTTCS
T ss_pred E-cCCCeEEEEeCCCcceeeeec--CCCCcEEEEEEC---CCCCcEEEEEcCCCcEEEEECCCCC--ccccccccccccc
Confidence 7 8999999999863 333332 244445555533 44554 7788899999999998763 233333
Q ss_pred --------eccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc-----------------------------------
Q 017601 237 --------CGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW----------------------------------- 272 (369)
Q Consensus 237 --------~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~----------------------------------- 272 (369)
..+ ...|++++|+|++ +|++++.|+.|++||++++
T Consensus 234 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
T 4a11_B 234 SQAVESANTAH-NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY 312 (408)
T ss_dssp CCCTTTSSCSC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred ceeeccccccc-cCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence 233 5789999999999 9999999999999998764
Q ss_pred ------------eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEc-CCCCE
Q 017601 273 ------------SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKC-SNRDV 339 (369)
Q Consensus 273 ------------~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~-~d~~~ 339 (369)
+++..+.+| ...|++++|+| ++++|++++.|+.|++||+++.+.+.....+. ...... .+...
T Consensus 313 ~~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 388 (408)
T 4a11_B 313 GSTIAVYTVYSGEQITMLKGH-YKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETT--TKSQLNPAFEDA 388 (408)
T ss_dssp TTEEEEEETTTCCEEEEECCC-SSCEEEEEEET-TTTEEEEEETTSCEEEEEECC-------------------------
T ss_pred CCEEEEEECcCCcceeeeccC-CCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceE--ecccccccccee
Confidence 345566788 89999999999 99999999999999999999987776654433 111111 24556
Q ss_pred EEEEeCCCcEEEEECCC
Q 017601 340 LGGWSDSGSIFVADVVA 356 (369)
Q Consensus 340 l~sgs~dg~I~iWd~~~ 356 (369)
+.+.+.|+.+++|+...
T Consensus 389 ~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 389 WSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp -----------------
T ss_pred ecccCccCceeecCCcc
Confidence 77888899999998754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-24 Score=196.54 Aligned_cols=248 Identities=11% Similarity=0.086 Sum_probs=178.4
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceE
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSI 174 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i 174 (369)
.+.|+||+++ +||++ .+++|++||+.++.. ........| ...+.+++|+|+ +.+++++ +.|++|
T Consensus 28 ~~~l~WS~~~-----~lAvg-~D~tV~iWd~~tg~~---~~~~~~~~~-----~~~V~~v~~~~~-~~~l~sg-s~Dg~v 91 (318)
T 4ggc_A 28 LNLVDWSSGN-----VLAVA-LDNSVYLWSASSGDI---LQLLQMEQP-----GEYISSVAWIKE-GNYLAVG-TSSAEV 91 (318)
T ss_dssp CBCEEECTTS-----EEEEE-ETTEEEEEETTTCCE---EEEEECCST-----TCCEEEEEECTT-SSEEEEE-ETTSEE
T ss_pred ceEEEECCCC-----EEEEE-eCCEEEEEECCCCCE---EEEEEecCC-----CCeEEEEEECCC-CCEEEEE-ECCCcE
Confidence 4789999862 66655 478999999986521 111122222 223678999994 5578888 899999
Q ss_pred EEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-
Q 017601 175 DVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG- 253 (369)
Q Consensus 175 ~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g- 253 (369)
++||............|...+.... .++..+++++.++.+++|+..... ..+..+.++ ...+.+++|++++
T Consensus 92 ~iw~~~~~~~~~~~~~h~~~~~~~~-----~~~~~l~s~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~ 163 (318)
T 4ggc_A 92 QLWDVQQQKRLRNMTSHSARVGSLS-----WNSYILSSGSRSGHIHHHDVRVAE--HHVATLSGH-SQEVCGLRWAPDGR 163 (318)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEE-----EETTEEEEEETTSEEEEEETTSSS--CEEEEEECC-SSCEEEEEECTTSS
T ss_pred EEeecCCceeEEEecCccceEEEee-----cCCCEEEEEecCCceEeeecCCCc--eeEEEEcCc-cCceEEEEEcCCCC
Confidence 9999864332222223444444433 234578888999999999998763 455666665 6889999999999
Q ss_pred cEEEEeCCCcEEEEeCCCcee----eeeccccccCceEEEEEcCCCCCEE--EEEECCCeEEEEECcCCceeEEEEcCCC
Q 017601 254 NIAVAGADRTVTIYDPRRWSA----LSRWVHCSKYEITGLSFSSIDSNYI--YVQGVDYEVFCGQWRESSKVFAFRGDSN 327 (369)
Q Consensus 254 ~lasgs~D~~v~vwD~~~~~~----~~~~~~h~~~~v~~l~~sp~d~~~l--~s~s~D~~i~vwd~~~~~~~~~~~g~~~ 327 (369)
+|++++.|++|++||+++++. ......| ...|.++.++|.++..+ ++++.|++|++||.+..........+..
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~ 242 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 242 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSEEECCC-CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred EEEEEecCcceeEEECCCCcccccceeeeccc-CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceee
Confidence 999999999999999998654 3345566 78899999999445544 4567789999999999888777766654
Q ss_pred eeeeeEcCCCCEEEEE--eCCCcEEEEECCCCcchhhhcccCC
Q 017601 328 WLGFSKCSNRDVLGGW--SDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 328 ~~~~~~~~d~~~l~sg--s~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
.......+++..++++ +.|+.|++||+++++ .+..++||.
T Consensus 243 v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~-~~~~l~gH~ 284 (318)
T 4ggc_A 243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELKGHT 284 (318)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-EEEEECCCS
T ss_pred eeeeeecccccceEEEEEcCCCEEEEEECCCCc-EEEEEcCCC
Confidence 4444556677766654 489999999999886 456777774
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=217.28 Aligned_cols=247 Identities=12% Similarity=-0.044 Sum_probs=173.8
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccc---cc-------------cc---C--CCCCC
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLT---YS-------------VL---P--QDCGV 146 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~---~~-------------~~---~--~~~~~ 146 (369)
+..-...|.+|+|+||+ .++|+++.+++|+ |.... ..+.++. +. +. . .....
T Consensus 11 ~~~~~~~v~sv~~SpDG----~~iASas~D~TV~--d~~~~-~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~ 83 (588)
T 2j04_A 11 RKEFEDWKNNLTWARDG----TLYLTTFPDISIG--QPKYA-KDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQ 83 (588)
T ss_dssp SCCCSSSSCCEEECTTS----CEEEECSSSEEEE--EECCC-SCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTS
T ss_pred HhHhhccEEEEEECCCC----CEEEEEcCCceee--ccccc-ceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecC
Confidence 34445778888888873 6888888888776 32221 1111111 00 00 0 00001
Q ss_pred CCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeC---CcceeeeccCCCCCCCCcEEEEEcCCeEEEEe
Q 017601 147 GEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWY---PSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWD 223 (369)
Q Consensus 147 ~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD 223 (369)
.+..+.+++|+| ++..+|++ +.|++|+|||.......+. ... ...+..+. ++||+..|++++.||+|+|||
T Consensus 84 ~~~~V~~vawSP-dG~~LAs~-s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~sva---fSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 84 PVCYPRVCKPSP-IDDWMAVL-SNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFE---WNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp CSCCEEEEEECS-SSSCEEEE-ETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEE---ECSSSSCEEEEETTSEEEEEE
T ss_pred CCCcEEEEEECC-CCCEEEEE-eCCCcEEEEeCCceeeecc-CCCccccccEEEEE---EcCCCCEEEEEcCCCEEEEEE
Confidence 145688999999 56688888 8999999999766444432 111 11344454 456888999999999999999
Q ss_pred CCcccCCc----eeeeee----ccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCcee---eeecc-ccccCceEEEEE
Q 017601 224 LRMKENGG----CLHRIC----GSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSA---LSRWV-HCSKYEITGLSF 291 (369)
Q Consensus 224 ~~~~~~~~----~~~~~~----~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~---~~~~~-~h~~~~v~~l~~ 291 (369)
++++.-.. .+.++. +| ...|++++|+|+| +++++.|++|++||+..+.. ..++. +| ...|.+++|
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h-~~~V~svaF 234 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNAS-RRKITDLKI 234 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCC-SSCCCCEEE
T ss_pred CCCCccccccceeeeeeecccccc-cccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccc-cCcEEEEEE
Confidence 98862111 256653 33 4799999999999 99999999999999988663 35674 77 899999999
Q ss_pred cCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe-eeeeE--cCCCCEEEEEeCCCcEEEEECC
Q 017601 292 SSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW-LGFSK--CSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 292 sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~--~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+ ++.||+++ |++|++||+.+++......||... ..+.. .+|+..|+++++||+ ++|...
T Consensus 235 s---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 235 V---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp E---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred E---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 8 48999997 799999999987774333377732 23444 668899999999999 999975
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-24 Score=203.41 Aligned_cols=242 Identities=11% Similarity=0.055 Sum_probs=181.0
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
+...+.+++|+|++ ..++++++.++.|++||+.++. ....+..+ ..+.+++|+|++..+++++ +.
T Consensus 30 ~~~~~~~~~~s~dg---~~l~~~~~~d~~i~v~d~~~~~-----~~~~~~~~------~~v~~~~~spdg~~l~~~~-~~ 94 (391)
T 1l0q_A 30 VGSNPMGAVISPDG---TKVYVANAHSNDVSIIDTATNN-----VIATVPAG------SSPQGVAVSPDGKQVYVTN-MA 94 (391)
T ss_dssp CSSSEEEEEECTTS---SEEEEEEGGGTEEEEEETTTTE-----EEEEEECS------SSEEEEEECTTSSEEEEEE-TT
T ss_pred cCCCcceEEECCCC---CEEEEECCCCCeEEEEECCCCe-----EEEEEECC------CCccceEECCCCCEEEEEE-CC
Confidence 34568999999984 3455777789999999987541 11112111 1366899999665444554 78
Q ss_pred cceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcE-EEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 171 SKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNM-LAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 171 d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l-la~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
++.|++||....... ........+..+. +++++..+ ++++.|+.|++||++++ +.+..+..+ ..+.+++|
T Consensus 95 ~~~v~v~d~~~~~~~-~~~~~~~~~~~~~---~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~--~~~~~~~~ 165 (391)
T 1l0q_A 95 SSTLSVIDTTSNTVA-GTVKTGKSPLGLA---LSPDGKKLYVTNNGDKTVSVINTVTK---AVINTVSVG--RSPKGIAV 165 (391)
T ss_dssp TTEEEEEETTTTEEE-EEEECSSSEEEEE---ECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECC--SSEEEEEE
T ss_pred CCEEEEEECCCCeEE-EEEeCCCCcceEE---ECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEecC--CCcceEEE
Confidence 899999998643221 1222222333333 23456666 56667999999999988 777777766 77899999
Q ss_pred CCCC-cE-EEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE---CCCeEEEEECcCCceeEEEEc
Q 017601 250 SSTG-NI-AVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG---VDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 250 sp~g-~l-asgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s---~D~~i~vwd~~~~~~~~~~~g 324 (369)
+|++ .| ++++.|+.|++||+++++.+..+.. ...+.+++|+| ++++|++++ .|+.|++||+++++.+..+..
T Consensus 166 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 242 (391)
T 1l0q_A 166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--CCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence 9999 55 6788899999999999988877764 46799999999 999998888 689999999999999999988
Q ss_pred CCCeeeeeEcCCCCEE-EEEeCCCcEEEEECCCCcc
Q 017601 325 DSNWLGFSKCSNRDVL-GGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 325 ~~~~~~~~~~~d~~~l-~sgs~dg~I~iWd~~~~~~ 359 (369)
|.....+...++++.| ++++.|+.|++||+.+++.
T Consensus 243 ~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 243 GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 7754556667788876 6888999999999998753
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=230.55 Aligned_cols=241 Identities=10% Similarity=0.046 Sum_probs=179.1
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 163 (369)
....+.+|.+.|++++|+|++ .+||+++.+|.|++|+.... ...... .+ ...+.+++|+| +. +
T Consensus 9 ~~~~~~gh~~~V~~lafspdg----~~lAsgs~Dg~I~lw~~~~~-----~~~~~~-~~-----~~~V~~l~fsp-g~-~ 71 (902)
T 2oaj_A 9 AETNKYGMSSKPIAAAFDFTQ----NLLAIATVTGEVHIYGQQQV-----EVVIKL-ED-----RSAIKEMRFVK-GI-Y 71 (902)
T ss_dssp EEEEEEECSSCEEEEEEETTT----TEEEEEETTSEEEEECSTTC-----EEEEEC-SS-----CCCEEEEEEET-TT-E
T ss_pred ccccccCCCCCcEEEEECCCC----CEEEEEeCCCEEEEEeCCCc-----EEEEEc-CC-----CCCEEEEEEcC-CC-E
Confidence 334456899999999999984 79999999999999987643 111111 11 23477999999 54 7
Q ss_pred EEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCcee--------
Q 017601 164 AAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCL-------- 233 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~-------- 233 (369)
++++ +.|++|+|||... .+..+ .+...+..+. ++|++..+++++.||+|++||++++ ...
T Consensus 72 L~S~-s~D~~v~lWd~~~~~~~~~~---~~~~~V~~v~---~sp~g~~l~sgs~dg~V~lwd~~~~---~~~~~~i~~~~ 141 (902)
T 2oaj_A 72 LVVI-NAKDTVYVLSLYSQKVLTTV---FVPGKITSID---TDASLDWMLIGLQNGSMIVYDIDRD---QLSSFKLDNLQ 141 (902)
T ss_dssp EEEE-ETTCEEEEEETTTCSEEEEE---ECSSCEEEEE---CCTTCSEEEEEETTSCEEEEETTTT---EEEEEEECCHH
T ss_pred EEEE-ECcCeEEEEECCCCcEEEEE---cCCCCEEEEE---ECCCCCEEEEEcCCCcEEEEECCCC---ccccceecccc
Confidence 8887 8999999999863 33333 3445555555 3456788999999999999999876 332
Q ss_pred ---eeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeecccc-----------------ccCceEEEEE
Q 017601 234 ---HRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHC-----------------SKYEITGLSF 291 (369)
Q Consensus 234 ---~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h-----------------~~~~v~~l~~ 291 (369)
..+.+| ...|++++|+|++ .|++|+.|++| +||+++++++..+.+| +...|++++|
T Consensus 142 ~~~~~~~~h-~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 142 KSSFFPAAR-LSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHTCSSSC-CCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred ccccccccC-CCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence 122334 5889999999975 89999999999 9999999888777644 1477999999
Q ss_pred cCCCCCEEEEEECCCeEEEEECcCCceeEE--E---EcC-------------C-CeeeeeEc----CC-CCEEEEEeCC-
Q 017601 292 SSIDSNYIYVQGVDYEVFCGQWRESSKVFA--F---RGD-------------S-NWLGFSKC----SN-RDVLGGWSDS- 346 (369)
Q Consensus 292 sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~--~---~g~-------------~-~~~~~~~~----~d-~~~l~sgs~d- 346 (369)
+| ++++|++++.|++|++||+++++++.. + .+| . ....+..+ ++ +.+|++|+.|
T Consensus 220 sp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~ 298 (902)
T 2oaj_A 220 HP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSIS 298 (902)
T ss_dssp CT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECST
T ss_pred cC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCC
Confidence 99 999999999999999999999887654 2 123 2 11223332 23 3578888776
Q ss_pred ----CcEEEEEC
Q 017601 347 ----GSIFVADV 354 (369)
Q Consensus 347 ----g~I~iWd~ 354 (369)
+.+.+|++
T Consensus 299 ~~~~~~v~~~~~ 310 (902)
T 2oaj_A 299 RGDNQSLTMIDL 310 (902)
T ss_dssp TSSCCCEEEEEE
T ss_pred CCCCceEEEEec
Confidence 37899985
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=207.70 Aligned_cols=233 Identities=11% Similarity=0.070 Sum_probs=163.2
Q ss_pred eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccce
Q 017601 94 EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKS 173 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~ 173 (369)
.+..+++.++. ..+..+++.++.|++||..++.. ...+. + ...+.+++|+++ .++++ .|+.
T Consensus 60 ~~~~~~~~~~~---~~~~~~~~~d~~v~iWd~~~~~~-----~~~~~-~-----~~~v~~v~~~~~---~~~~~--~~~~ 120 (355)
T 3vu4_A 60 HLSKVRMLHRT---NYVAFVTGVKEVVHIWDDVKKQD-----VSRIK-V-----DAPVKDLFLSRE---FIVVS--YGDV 120 (355)
T ss_dssp CCCEEEECTTS---SEEEEECSSTTEEEEEETTTTEE-----EEEEE-C-----SSCEEEEEECSS---EEEEE--ETTE
T ss_pred CeEEEEEcCCC---CEEEEEECCccEEEEEECCCCcE-----EEEEE-C-----CCceEEEEEcCC---EEEEE--EcCE
Confidence 47778887763 23445666778999999875511 11111 1 123668999873 34444 4789
Q ss_pred EEEEeCCcc---eEEEEeeeCCcceeeeccCCCCCCCCcEEEE--EcCCeEEEEeCCcccCC------------ce-eee
Q 017601 174 IDVYDQDIH---LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAV--TEGCQLTIWDLRMKENG------------GC-LHR 235 (369)
Q Consensus 174 i~lwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~--s~d~~v~iwD~~~~~~~------------~~-~~~ 235 (369)
|++||.... +..+.. +..+..+. + ..++.+ +.||+|++||++++... .+ +..
T Consensus 121 i~i~d~~~~~~~~~~~~~---~~~~~~~s-----~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~ 190 (355)
T 3vu4_A 121 ISVFKFGNPWKRITDDIR---FGGVCEFS-----N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVL 190 (355)
T ss_dssp EEEEESSTTCCBSSCCEE---EEEEEEEE-----T--TEEEEEESSCTTCEEEEECCC------------------CCEE
T ss_pred EEEEECCCCceeeEEecc---CCceEEEE-----c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEE
Confidence 999998643 233222 22232332 2 355553 57999999999975200 01 566
Q ss_pred eeccCCCcEEEEEECCCC-cEEEEeCCCc-EEEEeCCCceeeeecc-c-cccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 236 ICGSVGDILYAVCSSSTG-NIAVAGADRT-VTIYDPRRWSALSRWV-H-CSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 236 ~~~~~~~~v~~v~~sp~g-~lasgs~D~~-v~vwD~~~~~~~~~~~-~-h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
+.+| ...|++++|+|+| +||+|+.|++ |+|||+++++++.++. + | ...|++++|+| ++++|++++.|++|++|
T Consensus 191 ~~~h-~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h-~~~v~~~~~s~-~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 191 IKAH-TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD-RADVVDMKWST-DGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp ECCC-SSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC-CSCEEEEEECT-TSCEEEEEETTCEEEEE
T ss_pred EEcc-CCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-CCcEEEEEECC-CCCEEEEEECCCEEEEE
Confidence 7766 7899999999999 9999999999 9999999999999998 6 8 99999999999 99999999999999999
Q ss_pred ECcCCce--eEEEEc----------------------CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 312 QWRESSK--VFAFRG----------------------DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 312 d~~~~~~--~~~~~g----------------------~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|++.+.. ...+.+ +.....+..++|+..|++++.||.+++|++..++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 268 EIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9976421 111100 0000123345689999999999999999987654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-25 Score=203.75 Aligned_cols=216 Identities=15% Similarity=0.088 Sum_probs=160.1
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC-ceeEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ-WSMAA 165 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~~a 165 (369)
.+.+|.+.|++++|+++. ....+++++.+|.|++||+..... ........| ...+.+++|+|+. ...++
T Consensus 50 ~~~~h~~~v~~~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~ 119 (379)
T 3jrp_A 50 TLTGHEGPVWRVDWAHPK--FGTILASCSYDGKVLIWKEENGRW---SQIAVHAVH-----SASVNSVQWAPHEYGPLLL 119 (379)
T ss_dssp EECCCSSCEEEEEECCGG--GCSEEEEEETTSCEEEEEEETTEE---EEEEEECCC-----SSCEEEEEECCGGGCSEEE
T ss_pred EecCCCCcEEEEEeCCCC--CCCEEEEeccCCEEEEEEcCCCce---eEeeeecCC-----CcceEEEEeCCCCCCCEEE
Confidence 356899999999998762 136899999999999999986410 011122222 2346789999963 45777
Q ss_pred EEecccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCC----------CCCCCcEEEEEcCCeEEEEeCCcccCC-ce
Q 017601 166 VARSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSP----------VNGGPNMLAVTEGCQLTIWDLRMKENG-GC 232 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~----------~~~~~~lla~s~d~~v~iwD~~~~~~~-~~ 232 (369)
++ +.|+.|++||.... ........+...+..+.+.+. .+++..+++++.|+.|++||++++... ..
T Consensus 120 ~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 198 (379)
T 3jrp_A 120 VA-SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 198 (379)
T ss_dssp EE-ETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred Ee-cCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence 77 89999999998633 233333345555555554432 014678889999999999999876321 23
Q ss_pred eeeeeccCCCcEEEEEECCC---C-cEEEEeCCCcEEEEeCCCce-----eeeeccccccCceEEEEEcCCCCCEEEEEE
Q 017601 233 LHRICGSVGDILYAVCSSST---G-NIAVAGADRTVTIYDPRRWS-----ALSRWVHCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~---g-~lasgs~D~~v~vwD~~~~~-----~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
+..+..+ ...|++++|+|+ + +|++++.|++|++||++++. .+.....| ...|++++|+| ++++|++++
T Consensus 199 ~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~-~g~~l~~~~ 275 (379)
T 3jrp_A 199 ESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSL-SGNVLALSG 275 (379)
T ss_dssp EEEECCC-SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECS-SSCCEEEEE
T ss_pred EEEEecc-cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC-CCcEEEEEEcC-CCCEEEEec
Confidence 4455555 689999999999 8 99999999999999999853 23334457 88999999999 999999999
Q ss_pred CCCeEEEEECcCC
Q 017601 304 VDYEVFCGQWRES 316 (369)
Q Consensus 304 ~D~~i~vwd~~~~ 316 (369)
.|+.|++||+...
T Consensus 276 ~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 276 GDNKVTLWKENLE 288 (379)
T ss_dssp SSSSEEEEEEEET
T ss_pred CCCcEEEEeCCCC
Confidence 9999999999853
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=230.59 Aligned_cols=196 Identities=10% Similarity=0.042 Sum_probs=160.5
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN 229 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~ 229 (369)
.+.+++|+|+ ..++|++ +.|++|+|||........ ...+...+..+.+. + +..|++++.|++|+|||++++
T Consensus 19 ~V~~lafspd-g~~lAsg-s~Dg~I~lw~~~~~~~~~-~~~~~~~V~~l~fs---p-g~~L~S~s~D~~v~lWd~~~~-- 89 (902)
T 2oaj_A 19 KPIAAAFDFT-QNLLAIA-TVTGEVHIYGQQQVEVVI-KLEDRSAIKEMRFV---K-GIYLVVINAKDTVYVLSLYSQ-- 89 (902)
T ss_dssp CEEEEEEETT-TTEEEEE-ETTSEEEEECSTTCEEEE-ECSSCCCEEEEEEE---T-TTEEEEEETTCEEEEEETTTC--
T ss_pred CcEEEEECCC-CCEEEEE-eCCCEEEEEeCCCcEEEE-EcCCCCCEEEEEEc---C-CCEEEEEECcCeEEEEECCCC--
Confidence 3678999995 5688888 899999999986433222 23344455555543 3 457999999999999999988
Q ss_pred CceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceee-----------eeccccccCceEEEEEcCCCCC
Q 017601 230 GGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL-----------SRWVHCSKYEITGLSFSSIDSN 297 (369)
Q Consensus 230 ~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~-----------~~~~~h~~~~v~~l~~sp~d~~ 297 (369)
+++..+.++ ..|++++|+|++ +|++|+.||+|++||+++++.. ..+.+| ...|++++|+|.++.
T Consensus 90 -~~~~~~~~~--~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h-~~~V~sl~~sp~~~~ 165 (902)
T 2oaj_A 90 -KVLTTVFVP--GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR-LSPIVSIQWNPRDIG 165 (902)
T ss_dssp -SEEEEEECS--SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC-CCCCCEEEEETTEEE
T ss_pred -cEEEEEcCC--CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC-CCCeEEEEEccCCCC
Confidence 788888766 899999999999 9999999999999999987754 345678 899999999994457
Q ss_pred EEEEEECCCeEEEEECcCCceeEEEEcC-------------------CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 298 YIYVQGVDYEVFCGQWRESSKVFAFRGD-------------------SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 298 ~l~s~s~D~~i~vwd~~~~~~~~~~~g~-------------------~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.|++++.|++| +||+++++++..+.+| .....+...++|.+|++|+.||+|++||+++++
T Consensus 166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 89999999999 9999999999988876 223455567899999999999999999998876
Q ss_pred c
Q 017601 359 N 359 (369)
Q Consensus 359 ~ 359 (369)
.
T Consensus 245 ~ 245 (902)
T 2oaj_A 245 M 245 (902)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=199.06 Aligned_cols=223 Identities=13% Similarity=0.043 Sum_probs=160.7
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc----cccccCCCCCCCCCCeeEEEECCCC-ce
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL----TYSVLPQDCGVGEGSWSGLCFSPSQ-WS 162 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~p~~-~~ 162 (369)
+.+|.+.|.+++|+|.. +..++++++.+|.|++||+.......... ...+..| ...+.+++|+|+. ..
T Consensus 53 ~~~~~~~v~~~~~~~~~--d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~ 125 (351)
T 3f3f_A 53 WRAHDSSIVAIDWASPE--YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS-----KGSLYSVKFAPAHLGL 125 (351)
T ss_dssp EECCSSCEEEEEECCGG--GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCC-----SSCEEEEEECCGGGCS
T ss_pred eccCCCcEEEEEEcCCC--CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeeccc-----CCceeEEEEcCCCCCc
Confidence 45899999999999831 13689999999999999998653211110 1112222 2346789999952 55
Q ss_pred eEEEEecccceEEEEeCCc--ceEEEEe-----------eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC
Q 017601 163 MAAVARSFSKSIDVYDQDI--HLRTLRT-----------LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN 229 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~--~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~ 229 (369)
+++++ +.|+.|++||... ....+.. ..+...+..+.+.|...++..+++++.|+.+.+|+...+.
T Consensus 126 ~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~- 203 (351)
T 3f3f_A 126 KLACL-GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK- 203 (351)
T ss_dssp EEEEE-ETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-
T ss_pred EEEEe-cCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-
Confidence 67777 8999999999742 1111110 0122233344433321235688888999999888877651
Q ss_pred CceeeeeeccCCCcEEEEEECCCC-----cEEEEeCCCcEEEEeCCCc--------------------------------
Q 017601 230 GGCLHRICGSVGDILYAVCSSSTG-----NIAVAGADRTVTIYDPRRW-------------------------------- 272 (369)
Q Consensus 230 ~~~~~~~~~~~~~~v~~v~~sp~g-----~lasgs~D~~v~vwD~~~~-------------------------------- 272 (369)
...+..+..+ ...|++++|+|++ +|++|+.|++|++||++++
T Consensus 204 ~~~~~~~~~h-~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (351)
T 3f3f_A 204 LHVAAKLPGH-KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS 282 (351)
T ss_dssp EEEEEECCCC-CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------
T ss_pred eeeeeecCCC-CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccc
Confidence 1235556655 6899999999996 7999999999999999874
Q ss_pred --------------eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 273 --------------SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 273 --------------~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
+.+..+.+| ...|++++|+| ++++|++++.|+.|++||+.+++....+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 283 NTEEKAELQSNLQVELLSEHDDH-NGEVWSVSWNL-TGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp --------CCSEEEEEEEEECTT-SSCEEEEEECS-SSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccceeeeecccccccEEEEEecc-cccEEEEEEcC-CCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 667788899 99999999999 9999999999999999999987554444
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=213.68 Aligned_cols=250 Identities=8% Similarity=-0.065 Sum_probs=150.3
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECC-------CCc
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSP-------SQW 161 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p-------~~~ 161 (369)
..|.+.+....++++ ..++|+++.+++|++||...+..........+.+| +..+.+++|+| .++
T Consensus 86 ~~~~~~~~~~~~~~~----~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH-----~~~v~~v~~~p~~~~~~~~d~ 156 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVY----SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGH-----HNFVNDIDIADVYSADNRLAE 156 (393)
T ss_dssp C----------CCEE----EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSC-----SSCEEEEEEEEEECTTCSEEE
T ss_pred cccCCCcceeecCCC----CCEEEEEeCCCcEEEEECCCCccceeeeecccCCC-----CCceEEEEEccccccccCCCC
Confidence 345666666666665 47999999999999999986521000000112223 23467899987 245
Q ss_pred eeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCC-CcEEEEEcCCeEEEEeCCcccCCceee------
Q 017601 162 SMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGG-PNMLAVTEGCQLTIWDLRMKENGGCLH------ 234 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~lla~s~d~~v~iwD~~~~~~~~~~~------ 234 (369)
.+||++ |.|++|+|||+...........+...+..+.+.| ++ ..|++++.|++|++||++++.......
T Consensus 157 ~~las~-s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p---~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~ 232 (393)
T 4gq1_A 157 QVIASV-GDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRP---SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK 232 (393)
T ss_dssp EEEEEE-ETTSEEEEEEEETTEEEEEEEECSSCEEEEEEET---TEEEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred CEEEEE-ECCCeEEEEECCCCceeeeecCCCCCcEEEEECC---CCCceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence 688888 9999999999754333333444555554554433 34 367888999999999998763111000
Q ss_pred ----------------eeeccCCCcEEEEEEC-CCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcC---
Q 017601 235 ----------------RICGSVGDILYAVCSS-STG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSS--- 293 (369)
Q Consensus 235 ----------------~~~~~~~~~v~~v~~s-p~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp--- 293 (369)
...++ ...+.+++|+ |++ .|++++.|+++++||++.++....+..| ...+..+.++|
T Consensus 233 ~~~~~s~~~~~~~~~~~~~~~-~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~-~~~~~~~~~~~~~~ 310 (393)
T 4gq1_A 233 NPWLLTLNTLPLVNTCHSSGI-ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS-TMKLGPKNLLPNVQ 310 (393)
T ss_dssp CCCSEEEESGGGC------CC-SSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEE
T ss_pred cceEEecccccceeeeecccc-cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee-cCccccEEEccccc
Confidence 01122 4678888886 788 9999999999999999988777766666 54444443333
Q ss_pred ----------------CCCCEEEEEECCCeEEEEECcCCceeEEEEcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 294 ----------------IDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 294 ----------------~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
.++.++++++.|++|++||+.++++...+.+|. ....+...+||++||+++++| +.+|++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 311 GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 133467778899999999999988888777665 233455578999999999877 555554
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-24 Score=204.49 Aligned_cols=241 Identities=15% Similarity=0.051 Sum_probs=182.7
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..+|.+.|++++|+++ ..++++++.++.|++||+.+.. ....+..+. ..+.+++|+|++..+++++
T Consensus 165 ~~~~~~~v~~~~~~~~----~~~~~s~~~d~~v~~~d~~~~~-----~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 230 (433)
T 3bws_A 165 YKKKLGFVETISIPEH----NELWVSQMQANAVHVFDLKTLA-----YKATVDLTG-----KWSKILLYDPIRDLVYCSN 230 (433)
T ss_dssp HHTTCCEEEEEEEGGG----TEEEEEEGGGTEEEEEETTTCC-----EEEEEECSS-----SSEEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEEcCC----CEEEEEECCCCEEEEEECCCce-----EEEEEcCCC-----CCeeEEEEcCCCCEEEEEe
Confidence 3478999999999887 3788999999999999987541 111222221 2356899999766555555
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE--------cCCeEEEEeCCcccCCceeeeeecc
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT--------EGCQLTIWDLRMKENGGCLHRICGS 239 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s--------~d~~v~iwD~~~~~~~~~~~~~~~~ 239 (369)
+.|+.|++||...... .........+..+. +++++..+++++ .|+.|++||++++ +.+..+.+.
T Consensus 231 -~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~---~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~---~~~~~~~~~ 302 (433)
T 3bws_A 231 -WISEDISVIDRKTKLE-IRKTDKIGLPRGLL---LSKDGKELYIAQFSASNQESGGGRLGIYSMDKE---KLIDTIGPP 302 (433)
T ss_dssp -TTTTEEEEEETTTTEE-EEECCCCSEEEEEE---ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT---EEEEEEEEE
T ss_pred -cCCCcEEEEECCCCcE-EEEecCCCCceEEE---EcCCCCEEEEEECCCCccccCCCeEEEEECCCC---cEEeeccCC
Confidence 7899999999853321 12222222333333 235566777776 4889999999987 666666555
Q ss_pred CCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC-------------
Q 017601 240 VGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV------------- 304 (369)
Q Consensus 240 ~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~------------- 304 (369)
..+.+++|+|++ .+++++.|+.|++||+++++.+..+. + ...+.+++|+| ++++|++++.
T Consensus 303 --~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~-~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g 377 (433)
T 3bws_A 303 --GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-V-FDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKG 377 (433)
T ss_dssp --ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-C-SSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCC
T ss_pred --CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-C-CCCCCeEEEcC-CCCEEEEEecCCCcccccccccc
Confidence 688999999999 55777999999999999998888776 5 67899999999 9999888876
Q ss_pred --CCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeC-CCcEEEEECC
Q 017601 305 --DYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSD-SGSIFVADVV 355 (369)
Q Consensus 305 --D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~-dg~I~iWd~~ 355 (369)
|+.|++||+.+++.+..+.++.....+...+++++|++++. |+.|++|++.
T Consensus 378 ~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 378 LVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 57999999999999999887665456666789999887775 9999999985
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=207.26 Aligned_cols=246 Identities=11% Similarity=0.039 Sum_probs=176.1
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEec--CCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLD--TSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+|.+.|++++|+|++ ..++++++.+|.|++|++. .+. . ...+..+. ....+.+++|+|+ +..+++
T Consensus 99 ~~~~~~v~~~~~s~d~---~~l~~~~~~dg~v~iwd~~~~~~~-~----~~~~~~~~---~~~~v~~~~~sp~-~~~l~~ 166 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDE---SRLIACADSDKSLLVFDVDKTSKN-V----LKLRKRFC---FSKRPNAISIAED-DTTVII 166 (450)
T ss_dssp -CCCCCEEEEEECTTS---SEEEEEEGGGTEEEEEEECSSSSS-C----EEEEEEEE---CSSCEEEEEECTT-SSEEEE
T ss_pred CccCCceEEEEEcCCC---CEEEEEECCCCeEEEEECcCCCCc-e----eeeeeccc---CCCCceEEEEcCC-CCEEEE
Confidence 3688899999999984 3445899999999999998 331 1 11111110 1123678999995 457777
Q ss_pred EecccceEEEEeCCcce--E-EE-EeeeCCcceeeeccCCCCCC---CCcEEEEEcCCeEEEEeCCcccCCceeee-eec
Q 017601 167 ARSFSKSIDVYDQDIHL--R-TL-RTLWYPSSLNFVQNLSPVNG---GPNMLAVTEGCQLTIWDLRMKENGGCLHR-ICG 238 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~--~-~~-~~~~~~~~v~~~~~~~~~~~---~~~lla~s~d~~v~iwD~~~~~~~~~~~~-~~~ 238 (369)
+ +.++.|.+|+..... . .. ....+...+..+.+. |+ +..|++++.|++|++||++++ +++.. +.+
T Consensus 167 ~-~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s---p~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~ 239 (450)
T 2vdu_B 167 A-DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI---KDSDGHQFIITSDRDEHIKISHYPQC---FIVDKWLFG 239 (450)
T ss_dssp E-ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE---ECTTSCEEEEEEETTSCEEEEEESCT---TCEEEECCC
T ss_pred E-eCCCcEEEEecCCcccccccceeeecccCceEEEEEc---CCCCCCcEEEEEcCCCcEEEEECCCC---ceeeeeecC
Confidence 7 789999999874221 1 01 112234444444432 34 558888999999999999987 66666 334
Q ss_pred cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc------------------------ccCceEEEEEcC
Q 017601 239 SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC------------------------SKYEITGLSFSS 293 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h------------------------~~~~v~~l~~sp 293 (369)
+ ...|++++|+ ++ +|++|+.|++|++||+++++++..+..+ ....|.+++|+|
T Consensus 240 h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 240 H-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp C-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred C-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 4 5899999999 99 9999999999999999999888777532 035699999999
Q ss_pred CCCCEEEEEE-CCCeEEEEEC--cCC---ceeEEEEcCCCeeeeeEcCCCCEEEEEeC------CCcEEEEECCC
Q 017601 294 IDSNYIYVQG-VDYEVFCGQW--RES---SKVFAFRGDSNWLGFSKCSNRDVLGGWSD------SGSIFVADVVA 356 (369)
Q Consensus 294 ~d~~~l~s~s-~D~~i~vwd~--~~~---~~~~~~~g~~~~~~~~~~~d~~~l~sgs~------dg~I~iWd~~~ 356 (369)
++++|++++ .|+.|++||+ ..+ +.+..+.+|.....+...+++.+++.++. +..|.+|.+..
T Consensus 318 -~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 318 -NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp -SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred -CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 999999999 8999999999 555 67777888765555665665433444443 55688887654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.2e-24 Score=195.95 Aligned_cols=207 Identities=12% Similarity=0.123 Sum_probs=156.2
Q ss_pred CCeeEEEECCCC--ceeEEEEecccceEEEEeCCc-ceEE-EEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeC
Q 017601 149 GSWSGLCFSPSQ--WSMAAVARSFSKSIDVYDQDI-HLRT-LRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDL 224 (369)
Q Consensus 149 ~~~~~l~~~p~~--~~~~a~~~s~d~~i~lwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~ 224 (369)
..+.+++|+|++ +.+++++ +.|+.|++||... .... .....+...+..+.+. +++..|++++.|++|++||+
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAG-SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS---DDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEE-ETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEEC---TTSSEEEEEETTSEEEEEET
T ss_pred CceEEEEEcCCCCCceEEEEE-CCCCcEEEEEcCCCCceeEEEeccccCCEEEEEEC---cCCCEEEEEcCCCcEEEEEc
Confidence 347799999965 5788888 8999999999863 2111 2223355556665543 46778999999999999999
Q ss_pred CcccCCceeeeeeccCCCcEEEEEE--CCCC-cEEEEeCCCcEEEEeCCCceeeeecccccc------------------
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCS--SSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSK------------------ 283 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~--sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~------------------ 283 (369)
+++ +.+....+. ..|++++| +|++ +|++++.|++|++||+++++++..+..| .
T Consensus 116 ~~~---~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 189 (368)
T 3mmy_A 116 SSN---QAIQIAQHD--APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCADVIYPMAVVATAE 189 (368)
T ss_dssp TTT---EEEEEEECS--SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-SCEEEEEEETTEEEEEEGG
T ss_pred CCC---Cceeecccc--CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-CCceEEEecCCeeEEEeCC
Confidence 987 666655554 89999999 9999 9999999999999999998877666544 2
Q ss_pred -----------------------CceEEEEEcCCCCCE----EEEEECCCeEEEEECcCC---ceeEEEEcCCC------
Q 017601 284 -----------------------YEITGLSFSSIDSNY----IYVQGVDYEVFCGQWRES---SKVFAFRGDSN------ 327 (369)
Q Consensus 284 -----------------------~~v~~l~~sp~d~~~----l~s~s~D~~i~vwd~~~~---~~~~~~~g~~~------ 327 (369)
..+..+.+.+ +... +++++.|+.|++||++.. .....+.+|..
T Consensus 190 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (368)
T 3mmy_A 190 RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268 (368)
T ss_dssp GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred CcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence 2334444444 3333 999999999999999986 67788888862
Q ss_pred -------eeeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 328 -------WLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 328 -------~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
...+..++++.+|++|+.||.|++||+.+++. +..+.+|
T Consensus 269 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~ 314 (368)
T 3mmy_A 269 APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK-LKTSEQL 314 (368)
T ss_dssp CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE-EEECCCC
T ss_pred ccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE-EEEecCC
Confidence 33455577999999999999999999998753 3445444
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.93 E-value=9.1e-24 Score=202.48 Aligned_cols=210 Identities=14% Similarity=0.094 Sum_probs=161.3
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcc--ccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDR--LTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
.+.+|.++|.+++|+|++ ..++++++.+|.|.+|++......... .......| ...+.+++|+|.+..++
T Consensus 176 ~~~~h~~~v~~l~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h-----~~~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 176 RLRGHQKEGYGLSWNPNL---NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH-----TAVVEDVAWHLLHESLF 247 (430)
T ss_dssp EEECCSSCCCCEEECTTS---TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCC-----SSCEEEEEECSSCTTEE
T ss_pred EecCCCCCeEEEEeCCCC---CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCC-----CCCEeeeEEeCCCCCEE
Confidence 356899999999999974 238999999999999999864211000 01112222 23467899999777788
Q ss_pred EEEecccceEEEEeCCcc-----eEEEEeeeCCcceeeeccCCCCCCCC-cEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 165 AVARSFSKSIDVYDQDIH-----LRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
+++ +.|+.|++||.... ...+ ..+...+..+.+. |++. .+++++.|++|++||+++.. .++..+..
T Consensus 248 ~s~-~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~i~~~---p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~ 319 (430)
T 2xyi_A 248 GSV-ADDQKLMIWDTRNNNTSKPSHTV--DAHTAEVNCLSFN---PYSEFILATGSADKTVALWDLRNLK--LKLHSFES 319 (430)
T ss_dssp EEE-ETTSEEEEEETTCSCSSSCSEEE--ECCSSCEEEEEEC---SSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEC
T ss_pred EEE-eCCCeEEEEECCCCCCCcceeEe--ecCCCCeEEEEeC---CCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeec
Confidence 888 89999999998632 2222 2344555555543 3444 46678899999999999742 56777776
Q ss_pred cCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC--------------ceeeeeccccccCceEEEEEcCCCCC-EEEE
Q 017601 239 SVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR--------------WSALSRWVHCSKYEITGLSFSSIDSN-YIYV 301 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~--------------~~~~~~~~~h~~~~v~~l~~sp~d~~-~l~s 301 (369)
+ ...|++++|+|++ +|++++.|+.|+|||+++ .+.+..+.+| ...|++++|+| ++. +|++
T Consensus 320 h-~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p-~~~~~l~s 396 (430)
T 2xyi_A 320 H-KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNP-NEPWIICS 396 (430)
T ss_dssp C-SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC-SSCEEEEEECS-SSTTEEEE
T ss_pred C-CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC-CCCceEEEECC-CCCCEEEE
Confidence 5 6899999999999 699999999999999987 3567788899 89999999999 887 9999
Q ss_pred EECCCeEEEEECcC
Q 017601 302 QGVDYEVFCGQWRE 315 (369)
Q Consensus 302 ~s~D~~i~vwd~~~ 315 (369)
++.|+.|++|++..
T Consensus 397 ~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 397 VSEDNIMQVWQMAE 410 (430)
T ss_dssp EETTSEEEEEEECH
T ss_pred EECCCCEEEeEccc
Confidence 99999999999875
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=204.21 Aligned_cols=201 Identities=12% Similarity=0.041 Sum_probs=131.5
Q ss_pred EEECCCCceeEEEEecccceEEEEeCCcce----EEEEee-eCCcceeeeccCCC-----CCCCCcEEEEEcCCeEEEEe
Q 017601 154 LCFSPSQWSMAAVARSFSKSIDVYDQDIHL----RTLRTL-WYPSSLNFVQNLSP-----VNGGPNMLAVTEGCQLTIWD 223 (369)
Q Consensus 154 l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~----~~~~~~-~~~~~v~~~~~~~~-----~~~~~~lla~s~d~~v~iwD 223 (369)
+.+.|.+..++|++ +.|++|+|||..... ..+..+ .|...|..+.+.|. ..|+..|++++.|++|+|||
T Consensus 94 ~~~~~~~~~~las~-~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 94 VNSSPVYSLFLACV-CQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp ---CCEEEEEEEEE-ETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred eeecCCCCCEEEEE-eCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 44445466678887 999999999975321 112222 24444554443321 12566788899999999999
Q ss_pred CCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeee------------------------
Q 017601 224 LRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSR------------------------ 277 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~------------------------ 277 (369)
++++ .++..+..+ ...|.+++|+|++ +|++|+.|++|++||+++++....
T Consensus 173 ~~~~---~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 173 LTDE---GPILAGYPL-SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp EETT---EEEEEEEEC-SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred CCCC---ceeeeecCC-CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 9877 555444433 3899999999998 799999999999999988654332
Q ss_pred -ccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeee-------------------eeEcC--
Q 017601 278 -WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLG-------------------FSKCS-- 335 (369)
Q Consensus 278 -~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~-------------------~~~~~-- 335 (369)
..+| ...+.++.|++.+++.|++++.|+++++||+..++....+.+|..... ....+
T Consensus 249 ~~~~~-~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 249 HSSGI-ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY 327 (393)
T ss_dssp ---CC-SSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred ecccc-cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence 2356 778999999744999999999999999999988766665554431100 01111
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcch
Q 017601 336 NRDVLGGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 336 d~~~l~sgs~dg~I~iWd~~~~~~~ 360 (369)
++.++++|+.||+|++||+.+++..
T Consensus 328 ~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 328 MDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp TTEEEEEETTTTEEEEEETTCTTCC
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE
Confidence 5567889999999999999988653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=203.55 Aligned_cols=201 Identities=8% Similarity=-0.013 Sum_probs=149.7
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+|...|.+++|||++ ..||+++.+|.|++|+.+. ....+. |...+...++.+++||| ++.++|++
T Consensus 82 ~~~~~~V~~vawSPdG----~~LAs~s~dg~V~iwd~~~-------~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsg- 147 (588)
T 2j04_A 82 SQPVCYPRVCKPSPID----DWMAVLSNNGNVSVFKDNK-------MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVG- 147 (588)
T ss_dssp TSCSCCEEEEEECSSS----SCEEEEETTSCEEEEETTE-------EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEE-
T ss_pred cCCCCcEEEEEECCCC----CEEEEEeCCCcEEEEeCCc-------eeeecc-CCCccccccEEEEEEcC-CCCEEEEE-
Confidence 3678999999999984 7999999999999999542 111222 33333334577999999 56688888
Q ss_pred cccceEEEEeCCcc---------eEEEEee--eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee
Q 017601 169 SFSKSIDVYDQDIH---------LRTLRTL--WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC 237 (369)
Q Consensus 169 s~d~~i~lwd~~~~---------~~~~~~~--~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~ 237 (369)
+.|++|+|||.... +.++... .|...+..+.+ +|++ +++++.|++|++||+..+......+++.
T Consensus 148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVaw---SPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVW---YEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEE---ETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEE---cCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 89999999997532 2333211 13334444443 3454 8899999999999998773111334564
Q ss_pred -ccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEE--cCCCCCEEEEEECCCeEEEEECc
Q 017601 238 -GSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSF--SSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 238 -~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~--sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
++ ...|.+++|+ +..||+++ +++|++||+.+++......+| ...|..++| +| |+..|++++.||+ ++|..+
T Consensus 223 ~~h-~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh-~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 223 NAS-RRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGS-LENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCC-SSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSC-CSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS
T ss_pred ccc-cCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCC-CceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec
Confidence 44 5789999999 33888887 699999999988774444488 999999999 99 9999999999999 999974
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-22 Score=186.88 Aligned_cols=225 Identities=11% Similarity=0.067 Sum_probs=170.2
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEE
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTL 186 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~ 186 (369)
.++++++.++.|++||+.++. ....+..+ ..+.+++|+|++..+++++ +.|++|++||... ..+.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~-----~~~~~~~~------~~~~~~~~s~dg~~l~~~~-~~d~~i~v~d~~~~~~~~~~ 70 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK-----VTATIPVG------SNPMGAVISPDGTKVYVAN-AHSNDVSIIDTATNNVIATV 70 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE-----EEEEEECS------SSEEEEEECTTSSEEEEEE-GGGTEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCe-----EEEEeecC------CCcceEEECCCCCEEEEEC-CCCCeEEEEECCCCeEEEEE
Confidence 578888899999999987541 11122221 1256899999665555665 8999999999753 33333
Q ss_pred EeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cE-EEEeCCCc
Q 017601 187 RTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NI-AVAGADRT 263 (369)
Q Consensus 187 ~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~l-asgs~D~~ 263 (369)
. ....+..+.+ ++++..+++++ .+++|++||++++ +.+..+..+ ..+.+++|+|++ .| ++++.|+.
T Consensus 71 ~---~~~~v~~~~~---spdg~~l~~~~~~~~~v~v~d~~~~---~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 71 P---AGSSPQGVAV---SPDGKQVYVTNMASSTLSVIDTTSN---TVAGTVKTG--KSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp E---CSSSEEEEEE---CTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECS--SSEEEEEECTTSSEEEEEETTTTE
T ss_pred E---CCCCccceEE---CCCCCEEEEEECCCCEEEEEECCCC---eEEEEEeCC--CCcceEEECCCCCEEEEEeCCCCE
Confidence 2 2223444432 34566665554 5799999999988 777777766 789999999999 55 78888999
Q ss_pred EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEE-EEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEE
Q 017601 264 VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYI-YVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGG 342 (369)
Q Consensus 264 v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l-~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~s 342 (369)
|++||+++++.+..+..| ..+.+++|+| ++++| ++++.|+.|++||+++++....+..+.....+...+++++|++
T Consensus 140 v~~~d~~~~~~~~~~~~~--~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 216 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVG--RSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYV 216 (391)
T ss_dssp EEEEETTTTEEEEEEECC--SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEE
T ss_pred EEEEECCCCcEEEEEecC--CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEE
Confidence 999999999998888776 4579999999 99887 6778899999999999988888876653345555779998888
Q ss_pred Ee---CCCcEEEEECCCCcc
Q 017601 343 WS---DSGSIFVADVVAKEN 359 (369)
Q Consensus 343 gs---~dg~I~iWd~~~~~~ 359 (369)
++ .++.|++||+++++.
T Consensus 217 ~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 217 TNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp EEECSSCCEEEEEETTTTEE
T ss_pred EecCcCCCcEEEEECCCCeE
Confidence 88 689999999988753
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=192.78 Aligned_cols=245 Identities=8% Similarity=-0.026 Sum_probs=178.7
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccc-cccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTY-SVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+...+.+++|+|+ ..++++++.++.|++||+.++.. ...... ....| .+.+.+++|+| ++.+++++
T Consensus 120 ~~~~~~~~~~~s~~----~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~-----~~~v~~~~~~~-~~~~~~s~- 187 (433)
T 3bws_A 120 KTGFQPKSVRFIDN----TRLAIPLLEDEGMDVLDINSGQT-VRLSPPEKYKKK-----LGFVETISIPE-HNELWVSQ- 187 (433)
T ss_dssp ECSSCBCCCEESSS----SEEEEEBTTSSSEEEEETTTCCE-EEECCCHHHHTT-----CCEEEEEEEGG-GTEEEEEE-
T ss_pred cCCCCceEEEEeCC----CeEEEEeCCCCeEEEEECCCCeE-eeecCccccccc-----CCceeEEEEcC-CCEEEEEE-
Confidence 34466779999995 36888888889999999876521 100000 11111 22356899988 55677777
Q ss_pred cccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 169 SFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 169 s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|+.|++||... .+..+. .+...+..+.+ ++++..+++++ .|+.|++||++++ +.+..+..+ ..+.
T Consensus 188 ~~d~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~l~~~~~~~~~i~~~d~~~~---~~~~~~~~~--~~~~ 257 (433)
T 3bws_A 188 MQANAVHVFDLKTLAYKATVD--LTGKWSKILLY---DPIRDLVYCSNWISEDISVIDRKTK---LEIRKTDKI--GLPR 257 (433)
T ss_dssp GGGTEEEEEETTTCCEEEEEE--CSSSSEEEEEE---ETTTTEEEEEETTTTEEEEEETTTT---EEEEECCCC--SEEE
T ss_pred CCCCEEEEEECCCceEEEEEc--CCCCCeeEEEE---cCCCCEEEEEecCCCcEEEEECCCC---cEEEEecCC--CCce
Confidence 8999999999864 333332 23333333332 24566675555 7999999999987 677777766 7799
Q ss_pred EEEECCCC-cEEEEe--------CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCE-EEEEECCCeEEEEECcC
Q 017601 246 AVCSSSTG-NIAVAG--------ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNY-IYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 246 ~v~~sp~g-~lasgs--------~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~-l~s~s~D~~i~vwd~~~ 315 (369)
+++|+|+| .|++++ .|+.|++||+++++.+..+ .| ...+.+++|+| +++. +++++.|+.|++||+++
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~-~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GP-PGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EE-EECEEEEEECS-STTEEEEEETTTTEEEEEETTT
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cC-CCCcceEEECC-CCCEEEEEecCCCEEEEEECCC
Confidence 99999999 888877 5899999999998877765 45 56899999999 8865 56678999999999999
Q ss_pred CceeEEEEcCCCeeeeeEcCCCCEEEEEeC---------------CCcEEEEECCCCcc
Q 017601 316 SSKVFAFRGDSNWLGFSKCSNRDVLGGWSD---------------SGSIFVADVVAKEN 359 (369)
Q Consensus 316 ~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~---------------dg~I~iWd~~~~~~ 359 (369)
++....+........+...+++++|++++. ||.|++||+++++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 335 KKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp TEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred CcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 888888865544455666779998888877 57999999988753
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=189.05 Aligned_cols=187 Identities=9% Similarity=-0.048 Sum_probs=141.9
Q ss_pred CceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc------CCc
Q 017601 160 QWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE------NGG 231 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~------~~~ 231 (369)
++.+++++ +.|++|++||.. +.+..+. ......+ .+.|+ +++++.|++|++|+..... ..+
T Consensus 47 d~~~l~sg-~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~------~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 47 DKWVCMCR-CEDGALHFTQLKDSKTITTIT-TPNPRTG------GEHPA---IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp EEEEEEEE-EETTEEEEEEESSSSCEEEEE-EECCCTT------CCCCS---EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred CCCEEEEE-CCCCcEEEEECCCCcEEEEEe-cCCceee------eeCCc---eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 45677877 999999999975 3444443 1122222 22232 8999999999999776220 114
Q ss_pred eeeeeeccCCCcEEEEEECC--CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 232 CLHRICGSVGDILYAVCSSS--TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 232 ~~~~~~~~~~~~v~~v~~sp--~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
.++.+...+...|.+++|+| ++ ++++|+.|++|++||+++++.+.....++...|++++|+| ++.+|++|+.|+.|
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i 194 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGIL 194 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEE
Confidence 45454422247899999999 99 9999999999999999999887776554366899999999 99999999999999
Q ss_pred EEEECcCCcee-EEEEc-CCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 309 FCGQWRESSKV-FAFRG-DSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 309 ~vwd~~~~~~~-~~~~g-~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
++||+++++.. ..+.+ |.. ...+..++++.+|+++++ +.|++||+++++.
T Consensus 195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVG 247 (343)
T ss_dssp EEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTT
T ss_pred EEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCc
Confidence 99999998877 78887 763 234445779999999994 5999999998754
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-23 Score=209.76 Aligned_cols=204 Identities=14% Similarity=0.107 Sum_probs=157.5
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM 226 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~ 226 (369)
+.+.+++|+|+ +.+++++ +.|++|++||... ........ .|...+..+.+.+. .++..+++++.||+|++||+++
T Consensus 10 ~~V~~l~~s~d-g~~latg-~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 10 ELIHDAVLDYY-GKRLATC-SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP-KFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp CCEEEECCCSS-SCCEEEE-ETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCT-TSCSEEEEEETTSCEEEEEEET
T ss_pred ceeEEEEECCC-CCeEEEE-ECCCcEEEEecCCCCCccceeccCCcCceEEEEecCC-CCCCEEEEEeCCCeEEEEECCC
Confidence 34678999995 4578887 8999999999752 12222222 35555655554321 1267889999999999999987
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCC--C-cEEEEeCCCcEEEEeCCCce--eeeeccccccCceEEEEEcCC-------
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSST--G-NIAVAGADRTVTIYDPRRWS--ALSRWVHCSKYEITGLSFSSI------- 294 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~--g-~lasgs~D~~v~vwD~~~~~--~~~~~~~h~~~~v~~l~~sp~------- 294 (369)
+. ...+..+..+ ...|++++|+|+ + .+++|+.||+|++||++++. ....+.+| ...|++++|+|.
T Consensus 87 ~~-~~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~-~~~v~~l~~~p~~~~~~~~ 163 (753)
T 3jro_A 87 GR-WSQIAVHAVH-SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH-AIGVNSASWAPATIEEDGE 163 (753)
T ss_dssp TE-EEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC-SSCEEEEEECCCC------
T ss_pred Cc-ccccccccCC-CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC-CCceEEEEecCcccccccc
Confidence 61 1155556655 689999999999 8 99999999999999999863 34566788 899999999994
Q ss_pred -----CCCEEEEEECCCeEEEEECcCC----ceeEEEEcCCCe-eeeeEcCC---CCEEEEEeCCCcEEEEECCCCc
Q 017601 295 -----DSNYIYVQGVDYEVFCGQWRES----SKVFAFRGDSNW-LGFSKCSN---RDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 295 -----d~~~l~s~s~D~~i~vwd~~~~----~~~~~~~g~~~~-~~~~~~~d---~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
++.++++++.|++|++||++++ .+...+.+|... ..+..+++ +.+|++|+.||.|++||+.+++
T Consensus 164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ---CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 4899999999999999999886 556677788732 23444677 8999999999999999998864
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.4e-23 Score=186.72 Aligned_cols=203 Identities=12% Similarity=0.032 Sum_probs=126.9
Q ss_pred CccceeeEEEEeecCCCCceEEEEEec--------------------CCcEEEEEecCCCCCCccccccccCCCCCCCCC
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDS--------------------YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEG 149 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~--------------------~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (369)
-|.++|++|+|+|+...-...+++++. ++.|++|++.+..+.+ .....|..
T Consensus 109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~----~s~~~~~~----- 179 (356)
T 2w18_A 109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGK----ENQFLMPP----- 179 (356)
T ss_dssp SSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEE----EEEEECCC-----
T ss_pred ccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCcee----eeeccCCC-----
Confidence 467899999999982211245555443 5566666664321111 11111111
Q ss_pred CeeEEEECC--CCceeEEEEecccceEEEEeCC--cceEEEEeee-CCcceeeeccCCCCCCCCcE------------EE
Q 017601 150 SWSGLCFSP--SQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLW-YPSSLNFVQNLSPVNGGPNM------------LA 212 (369)
Q Consensus 150 ~~~~l~~~p--~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l------------la 212 (369)
....++|+| .++..+|++ +.|++|+|||.. +.++++.... +...+..+. |+|++..+ ++
T Consensus 180 ~v~~l~fs~~~g~~~~LaSg-S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va---fSpdG~~lvs~s~~~~~w~laS 255 (356)
T 2w18_A 180 EETILTFAEVQGMQEALLGT-TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA---YSEMGLLFIVLSHPCAKESESL 255 (356)
T ss_dssp SSCEEEEEEEETSTTEEEEE-ETTSEEEEEETTTCCEEEEEECCC---CCCEEEE---EEETTEEEEEEC----------
T ss_pred ceeeEEeeccCCCCceEEEe-cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE---ECCCCCEEEEeccCCCcceeec
Confidence 233577777 234567777 999999999985 4556554211 111221111 22334433 45
Q ss_pred EEcCCeEEEEeCCcccCCceeeeee-----ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCce
Q 017601 213 VTEGCQLTIWDLRMKENGGCLHRIC-----GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEI 286 (369)
Q Consensus 213 ~s~d~~v~iwD~~~~~~~~~~~~~~-----~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v 286 (369)
++.|++|++||..++ +.+..+. ++ ...+.+.+++ + .+|+|+.|++|+|||+++++++.++.+| ...+
T Consensus 256 Gs~D~tIklWd~~tg---k~l~v~~~~~p~Gh-~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH-~~~v 328 (356)
T 2w18_A 256 RSPVFQLIVINPKTT---LSVGVMLYCLPPGQ-AGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPV-SDQH 328 (356)
T ss_dssp --CCEEEEEEETTTT---EEEEEEEECCCTTC-CCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC---CC
T ss_pred cCCCcEEEEEECCCC---EEEEEEEeeccCCC-cceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCC-CCCe
Confidence 778999999999988 6665542 33 2335445554 7 8999999999999999999999999999 6665
Q ss_pred E-EEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 287 T-GLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 287 ~-~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
. .++||| |+++|+||+.|++|+|||+
T Consensus 329 vs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 329 WSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred EEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 5 689999 9999999999999999996
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-19 Score=168.65 Aligned_cols=215 Identities=13% Similarity=0.041 Sum_probs=148.2
Q ss_pred CcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc---eEEEEeCCcceEEEEeeeCCcc
Q 017601 118 GHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK---SIDVYDQDIHLRTLRTLWYPSS 194 (369)
Q Consensus 118 g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~---~i~lwd~~~~~~~~~~~~~~~~ 194 (369)
+.|++||++... ...+..+. ..+.+++|+|++ ..++++ +.++ .|++||....... ....+...
T Consensus 159 ~~i~i~d~~g~~------~~~l~~~~-----~~v~~~~~Spdg-~~la~~-s~~~~~~~i~~~d~~tg~~~-~l~~~~~~ 224 (415)
T 2hqs_A 159 YELRVSDYDGYN------QFVVHRSP-----QPLMSPAWSPDG-SKLAYV-TFESGRSALVIQTLANGAVR-QVASFPRH 224 (415)
T ss_dssp EEEEEEETTSCS------CEEEEEES-----SCEEEEEECTTS-SEEEEE-ECTTSSCEEEEEETTTCCEE-EEECCSSC
T ss_pred ceEEEEcCCCCC------CEEEeCCC-----CcceeeEEcCCC-CEEEEE-EecCCCcEEEEEECCCCcEE-EeecCCCc
Confidence 799999987431 11222221 235689999955 466776 5554 9999998632221 22223333
Q ss_pred eeeeccCCCCCCCCcEE-EEEcCC--eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CC--cEEEE
Q 017601 195 LNFVQNLSPVNGGPNML-AVTEGC--QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DR--TVTIY 267 (369)
Q Consensus 195 v~~~~~~~~~~~~~~ll-a~s~d~--~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~--~v~vw 267 (369)
+..+. ++||+..|+ +++.|+ .|.+||++++ +. ..+..+ ...+.+++|+|+| .|++++. ++ .|.+|
T Consensus 225 ~~~~~---~spdg~~la~~~~~~g~~~i~~~d~~~~---~~-~~l~~~-~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 225 NGAPA---FSPDGSKLAFALSKTGSLNLYVMDLASG---QI-RQVTDG-RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp EEEEE---ECTTSSEEEEEECTTSSCEEEEEETTTC---CE-EECCCC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCEE---EcCCCCEEEEEEecCCCceEEEEECCCC---CE-EeCcCC-CCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 44444 345676677 444454 5999999887 44 444444 4789999999999 7888776 45 67777
Q ss_pred eCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC---CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEe
Q 017601 268 DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD---YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWS 344 (369)
Q Consensus 268 D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D---~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs 344 (369)
|+.+++. ..+..| ...+.+++|+| |+++|++++.+ ..|++||+.+++.. .+..+.....+...+||++|+.++
T Consensus 297 d~~~~~~-~~l~~~-~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 297 NINGGAP-QRITWE-GSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp ETTSSCC-EECCCS-SSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEE
T ss_pred ECCCCCE-EEEecC-CCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEE
Confidence 9887763 455666 77899999999 99999988875 58999999987764 344443334556678999999888
Q ss_pred CCC---cEEEEECCCCc
Q 017601 345 DSG---SIFVADVVAKE 358 (369)
Q Consensus 345 ~dg---~I~iWd~~~~~ 358 (369)
.++ .|++||+..+.
T Consensus 373 ~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 373 SQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EETTEEEEEEEETTSCC
T ss_pred cCCCccEEEEEECCCCc
Confidence 877 79999997553
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-18 Score=168.01 Aligned_cols=291 Identities=8% Similarity=-0.029 Sum_probs=190.6
Q ss_pred EEeCCeEEEEEEeCCchhh-hcCCCccccccCc--ccccccccccCCccceeeEEEEee----cCCCCceEEEEEe-cCC
Q 017601 47 IASGCHLYKLQVMMDDWFV-SEGKDSLLIPEQT--PVMDSSMLNRCPHRSEVQSIALAE----TDSSGYMVLGSVD-SYG 118 (369)
Q Consensus 47 ~as~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~H~~~V~~l~~s~----~~~~~~~~las~d-~~g 118 (369)
+..|..+..+++.+++..+ ..+.++.+..++. +.. ..+..+.+...+..++|+| |+ ..+++++ .++
T Consensus 175 i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i~~g~~p~~va~sp~~~~dg----~~l~v~~~~~~ 248 (543)
T 1nir_A 175 IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEIKIGIEARSVESSKFKGYED----RYTIAGAYWPP 248 (543)
T ss_dssp EECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEEECCSEEEEEEECCSTTCTT----TEEEEEEEESS
T ss_pred EecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCC--cEEEEEecCCCcceEEeCCCcCCCC----CEEEEEEccCC
Confidence 3445556666777766554 3333343333333 222 2223345667789999999 84 4555555 478
Q ss_pred cEEEEEecCCCCCCccccccccCCCC----CCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceE--EEEeee
Q 017601 119 HLIVSKLDTSGKDVDRLTYSVLPQDC----GVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLR--TLRTLW 190 (369)
Q Consensus 119 ~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~--~~~~~~ 190 (369)
.|.+||..+.. .+. .....+... -+.+..+.+++++|+++..+++. ..+++|.+||... ... .+....
T Consensus 249 ~v~v~D~~t~~-~~~--~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-~~~g~i~vvd~~~~~~l~~~~i~~~~ 324 (543)
T 1nir_A 249 QFAIMDGETLE-PKQ--IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-KETGKVLLVNYKDIDNLTVTSIGAAP 324 (543)
T ss_dssp EEEEEETTTCC-EEE--EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-TTTTEEEEEECTTSSSCEEEEEECCS
T ss_pred eEEEEeccccc-cce--eecccCcccCccccccCCceEEEEECCCCCEEEEEE-CCCCeEEEEEecCCCcceeEEeccCc
Confidence 99999976541 110 111100000 01122356899999777777776 8899999999753 222 222212
Q ss_pred CCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeeeecc---CCCcEEEEEECCCC--cEEEEe-CCCc
Q 017601 191 YPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGS---VGDILYAVCSSSTG--NIAVAG-ADRT 263 (369)
Q Consensus 191 ~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~---~~~~v~~v~~sp~g--~lasgs-~D~~ 263 (369)
.+..+. ++|++.++++++ .+++|.+||++++ +++..+... +.+....+ ++|++ .+++++ .|++
T Consensus 325 ~~~~~~------~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~ 394 (543)
T 1nir_A 325 FLHDGG------WDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS 394 (543)
T ss_dssp SCCCEE------ECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE
T ss_pred CccCce------ECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCce
Confidence 233333 345677777655 5899999999998 777776631 01222223 57874 677776 6899
Q ss_pred EEEEeCCC-------ceeeeeccccccCceEEEEEcCCCCCEEEEEE-------CCCeEEEEECcCCcee-EEE------
Q 017601 264 VTIYDPRR-------WSALSRWVHCSKYEITGLSFSSIDSNYIYVQG-------VDYEVFCGQWRESSKV-FAF------ 322 (369)
Q Consensus 264 v~vwD~~~-------~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-------~D~~i~vwd~~~~~~~-~~~------ 322 (369)
|.|||+.+ ++++.++.+| ...+..+.|+| ++++|++++ .+++|.+||+.+.+.. ..+
T Consensus 395 V~v~d~~~~~~~~~~~~~v~~l~~~-g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~ 472 (543)
T 1nir_A 395 ISLIGTDPKNHPQYAWKKVAELQGQ-GGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA 472 (543)
T ss_dssp EEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHH
T ss_pred EEEEEeCCCCCchhcCeEEEEEEcC-CCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhc
Confidence 99999998 8999999999 88899999999 999999987 3789999999998776 443
Q ss_pred --EcC-CCeeeeeEcCCCCEEEEE-----eCCCcEEEEECCCCcc
Q 017601 323 --RGD-SNWLGFSKCSNRDVLGGW-----SDSGSIFVADVVAKEN 359 (369)
Q Consensus 323 --~g~-~~~~~~~~~~d~~~l~sg-----s~dg~I~iWd~~~~~~ 359 (369)
..+ .+...++..++|+.|+.+ +.|+.|.|||.++++.
T Consensus 473 ~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 473 DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp CCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred ccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 122 223456667899987755 3589999999999874
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-17 Score=152.43 Aligned_cols=226 Identities=8% Similarity=-0.011 Sum_probs=158.4
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEE
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTL 186 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~ 186 (369)
.++++...++.|++||..++.. .....+ ++.. +...+++|+|++..+++++ +.++.|.+||... .+..+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~---~~~~~~-~~~~----~~~~~~~~s~dg~~l~v~~-~~~~~v~~~d~~~~~~~~~~ 72 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV---DKVITI-ADAG----PTPMVPMVAPGGRIAYATV-NKSESLVKIDLVTGETLGRI 72 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE---EEEEEC-TTCT----TCCCCEEECTTSSEEEEEE-TTTTEEEEEETTTCCEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcE---EEEEEc-CCCC----CCccceEEcCCCCEEEEEe-CCCCeEEEEECCCCCeEeeE
Confidence 3677888899999999875411 101111 1100 0123699999765555655 7889999999753 33333
Q ss_pred Eeee------CCcceeeeccCCCCCCCCcEEEEE------------cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 187 RTLW------YPSSLNFVQNLSPVNGGPNMLAVT------------EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 187 ~~~~------~~~~v~~~~~~~~~~~~~~lla~s------------~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
.... .+..+.+ ++++..++++. .++.|.+||+.++ +.+..+... ..+.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~------s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~--~~~~~~~ 141 (337)
T 1pby_B 73 DLSTPEERVKSLFGAAL------SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAFEAP--RQITMLA 141 (337)
T ss_dssp ECCBTTEEEECTTCEEE------CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEEECC--SSCCCEE
T ss_pred EcCCcccccccccceEE------CCCCCEEEEEecccccccccccccCceEEEEECCCC---cEEEEEeCC--CCcceeE
Confidence 3221 3333433 34566666664 5799999999887 666666654 6788899
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccc---------------------------------------------
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCS--------------------------------------------- 282 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~--------------------------------------------- 282 (369)
|+|+| +|+++ ++.|.+||+.+++....+..+.
T Consensus 142 ~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (337)
T 1pby_B 142 WARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT 219 (337)
T ss_dssp ECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred ECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccccc
Confidence 99999 78777 6889999999877664443220
Q ss_pred --------------------cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEE
Q 017601 283 --------------------KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGG 342 (369)
Q Consensus 283 --------------------~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~s 342 (369)
...+.+++|+| ++++++++ ++.|++||+.+++.+..+..+....++...+|+++|++
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 296 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL 296 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEE
T ss_pred ceEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEE
Confidence 11344689999 99999888 79999999999888887765443345666789999998
Q ss_pred EeCCCcEEEEECCCCcc
Q 017601 343 WSDSGSIFVADVVAKEN 359 (369)
Q Consensus 343 gs~dg~I~iWd~~~~~~ 359 (369)
++.++.|++||+++++.
T Consensus 297 ~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 297 GGALGDLAAYDAETLEK 313 (337)
T ss_dssp ESBSSEEEEEETTTCCE
T ss_pred EcCCCcEEEEECcCCcE
Confidence 99999999999998763
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-18 Score=170.93 Aligned_cols=241 Identities=11% Similarity=0.003 Sum_probs=165.7
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEe--cCCCCCCccccccccCCCCCCCCCCeeEEEECC----CCceeEEEEe
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKL--DTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSP----SQWSMAAVAR 168 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p----~~~~~~a~~~ 168 (369)
+..++|+||+ ..+++++.++.|.+||+ .+. . ....+.. ..+..+++|+| ++.. ++++.
T Consensus 181 ~~~v~~spdg----~~l~v~~~d~~V~v~D~~~~t~-~----~~~~i~~------g~~p~~va~sp~~~~dg~~-l~v~~ 244 (543)
T 1nir_A 181 VHISRMSASG----RYLLVIGRDARIDMIDLWAKEP-T----KVAEIKI------GIEARSVESSKFKGYEDRY-TIAGA 244 (543)
T ss_dssp EEEEEECTTS----CEEEEEETTSEEEEEETTSSSC-E----EEEEEEC------CSEEEEEEECCSTTCTTTE-EEEEE
T ss_pred cceEEECCCC----CEEEEECCCCeEEEEECcCCCC-c----EEEEEec------CCCcceEEeCCCcCCCCCE-EEEEE
Confidence 8899999984 68888888899999999 432 1 1111211 11245799999 7664 55552
Q ss_pred cccceEEEEeCC--cceEEEEeee--------CCc-ceeeeccCCCCCCCCcE-EEEEcCCeEEEEeCCcccCCceeeee
Q 017601 169 SFSKSIDVYDQD--IHLRTLRTLW--------YPS-SLNFVQNLSPVNGGPNM-LAVTEGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 169 s~d~~i~lwd~~--~~~~~~~~~~--------~~~-~v~~~~~~~~~~~~~~l-la~s~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
..+++|.+||.. +.++.+.... ++. .+..+. +++++..+ ++..++++|.+||..+.+.. .+..+
T Consensus 245 ~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~---~s~~~~~~~vs~~~~g~i~vvd~~~~~~l-~~~~i 320 (543)
T 1nir_A 245 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII---ASHEHPEFIVNVKETGKVLLVNYKDIDNL-TVTSI 320 (543)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE---ECSSSSEEEEEETTTTEEEEEECTTSSSC-EEEEE
T ss_pred ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE---ECCCCCEEEEEECCCCeEEEEEecCCCcc-eeEEe
Confidence 568999999975 3444443311 111 222222 22344444 44567899999999876321 12244
Q ss_pred eccCCCcEEEEEECCCC-cEE-EEeCCCcEEEEeCCCceeeeeccc----cccCceEEEEEcCCC-CCEEEEEE-CCCeE
Q 017601 237 CGSVGDILYAVCSSSTG-NIA-VAGADRTVTIYDPRRWSALSRWVH----CSKYEITGLSFSSID-SNYIYVQG-VDYEV 308 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g-~la-sgs~D~~v~vwD~~~~~~~~~~~~----h~~~~v~~l~~sp~d-~~~l~s~s-~D~~i 308 (369)
.. +..+..++|+|+| +|+ ++..+++|.+||+++++++.++.. | ......+ ++| + +..+++++ .|++|
T Consensus 321 ~~--~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph-~g~g~~~-~~p-~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 321 GA--APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH-PGRGANF-VHP-KYGPVWSTSHLGDGSI 395 (543)
T ss_dssp EC--CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC-CTTCEEE-EET-TTEEEEEEEBSSSSEE
T ss_pred cc--CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC-CCCCccc-CCC-CCccEEEeccCCCceE
Confidence 43 3678889999999 555 455689999999999999887764 5 4444343 467 5 66677775 58999
Q ss_pred EEEECcC-------CceeEEEEcCCCe-eeeeEcCCCCEEEEEe-------CCCcEEEEECCCCcch
Q 017601 309 FCGQWRE-------SSKVFAFRGDSNW-LGFSKCSNRDVLGGWS-------DSGSIFVADVVAKENE 360 (369)
Q Consensus 309 ~vwd~~~-------~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs-------~dg~I~iWd~~~~~~~ 360 (369)
.+||+.+ .++++.+.+|... ..+...+++++|++++ .+++|.+||+.+++..
T Consensus 396 ~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 396 SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp EEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred EEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 9999998 7899999988633 3455578999999988 2789999999988753
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-17 Score=152.91 Aligned_cols=253 Identities=8% Similarity=-0.014 Sum_probs=156.8
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecC-CcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSY-GHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~-g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
...|...+.+++|+|++ ..+++++.+ +.+.+|+++........ ...+... +...+++|+|++..++++
T Consensus 33 ~~~~~~~~~~~~~spdg----~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~s~dg~~l~~~ 101 (343)
T 1ri6_A 33 VVDVPGQVQPMVVSPDK----RYLYVGVRPEFRVLAYRIAPDDGALTF-AAESALP------GSLTHISTDHQGQFVFVG 101 (343)
T ss_dssp EEECSSCCCCEEECTTS----SEEEEEETTTTEEEEEEECTTTCCEEE-EEEEECS------SCCSEEEECTTSSEEEEE
T ss_pred eEecCCCCceEEECCCC----CEEEEeecCCCeEEEEEecCCCCceee-ccccccC------CCCcEEEEcCCCCEEEEE
Confidence 34567789999999984 456655554 89999999732111110 0111111 123479999966544444
Q ss_pred EecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCcee--e--eeecc
Q 017601 167 ARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCL--H--RICGS 239 (369)
Q Consensus 167 ~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~--~--~~~~~ 239 (369)
+ ..++.|.+||.. ..............+..+. +++++..+++++ .++.|.+||+.+.. +.. . .+...
T Consensus 102 ~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~ 175 (343)
T 1ri6_A 102 S-YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSAN---ISPDNRTLWVPALKQDRICLFTVSDDG--HLVAQDPAEVTTV 175 (343)
T ss_dssp E-TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCE---ECTTSSEEEEEEGGGTEEEEEEECTTS--CEEEEEEEEEECS
T ss_pred e-cCCCeEEEEECCCCccccccccccCCCCceEEE---ECCCCCEEEEecCCCCEEEEEEecCCC--ceeeecccccccC
Confidence 4 668999999983 1112222222222222222 335666777766 78999999998721 222 1 22222
Q ss_pred CCCcEEEEEECCCC-cEEE-EeCCCcEEEEeCCC--cee--eeecc----cc-ccCceEEEEEcCCCCCEEE-EEECCCe
Q 017601 240 VGDILYAVCSSSTG-NIAV-AGADRTVTIYDPRR--WSA--LSRWV----HC-SKYEITGLSFSSIDSNYIY-VQGVDYE 307 (369)
Q Consensus 240 ~~~~v~~v~~sp~g-~las-gs~D~~v~vwD~~~--~~~--~~~~~----~h-~~~~v~~l~~sp~d~~~l~-s~s~D~~ 307 (369)
.+..+.+++|+|+| ++++ +..++.|.+||+.. ++. ...+. ++ ....+..++|+| ++++|+ +.+.|+.
T Consensus 176 ~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 176 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASL 254 (343)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTE
T ss_pred CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCE
Confidence 13578899999999 5654 45899999999953 322 22221 11 023567899999 998877 4557999
Q ss_pred EEEEECcC----CceeEEEEcCCCeeeeeEcCCCCEEEEEe-CCCcEEEEEC--CCCc
Q 017601 308 VFCGQWRE----SSKVFAFRGDSNWLGFSKCSNRDVLGGWS-DSGSIFVADV--VAKE 358 (369)
Q Consensus 308 i~vwd~~~----~~~~~~~~g~~~~~~~~~~~d~~~l~sgs-~dg~I~iWd~--~~~~ 358 (369)
|++||+.. .+.+..+..+.....+...+++++|+.++ .++.|.+|++ ++++
T Consensus 255 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred EEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 99999983 23444554444234556677999888777 6899999954 4553
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-18 Score=152.96 Aligned_cols=234 Identities=12% Similarity=-0.031 Sum_probs=153.8
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecC-CCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDT-SGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
+..|.+.|.+++|+|++ ..+++++ ++.|++||+.+ +.. ......+ ....+.+++|+|++. .+++
T Consensus 37 ~~~~~~~v~~~~~spdg----~~l~~~~-~~~i~~~d~~~~~~~-----~~~~~~~----~~~~~~~~~~spdg~-~l~~ 101 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDG----KYLLLNS-EGLLYRLSLAGDPSP-----EKVDTGF----ATICNNDHGISPDGA-LYAI 101 (297)
T ss_dssp EEEESSCCEEEEECTTS----SEEEEEE-TTEEEEEESSSCCSC-----EECCCTT----CCCBCSCCEECTTSS-EEEE
T ss_pred eccCCcceEeeEECCCC----CEEEEEc-CCeEEEEeCCCCCCc-----eEecccc----ccccccceEECCCCC-EEEE
Confidence 45688999999999984 5666655 78999999986 421 1111111 112244799999654 5565
Q ss_pred Ee-cccceEEEEe--CC-cceEEEEeeeCCcceeeeccCCCCCCCCcEE-EEEcCCeEEEEeCCcccCCceeeeeeccCC
Q 017601 167 AR-SFSKSIDVYD--QD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNML-AVTEGCQLTIWDLRMKENGGCLHRICGSVG 241 (369)
Q Consensus 167 ~~-s~d~~i~lwd--~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ll-a~s~d~~v~iwD~~~~~~~~~~~~~~~~~~ 241 (369)
+. ..++.++||. .. ...+.+ .....+..+. ++|++..++ +++.++.++||++.... .....+..+ .
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~---~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~-~ 172 (297)
T 2ojh_A 102 SDKVEFGKSAIYLLPSTGGTPRLM---TKNLPSYWHG---WSPDGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTHG-E 172 (297)
T ss_dssp EECTTTSSCEEEEEETTCCCCEEC---CSSSSEEEEE---ECTTSSEEEEEEEETTEEEEEEEETTT--CCEEECCCS-S
T ss_pred EEeCCCCcceEEEEECCCCceEEe---ecCCCccceE---ECCCCCEEEEEECCCCceEEEEEECCC--CcceEcccC-C
Confidence 52 1334556654 33 222222 2222233333 335666776 56789999999965321 233444433 4
Q ss_pred CcEEEEEECCCC-cEEEEe-CCCcEEEEeCC-CceeeeeccccccCceEEEEEcCCCCCEEEEEECC-----------Ce
Q 017601 242 DILYAVCSSSTG-NIAVAG-ADRTVTIYDPR-RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD-----------YE 307 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs-~D~~v~vwD~~-~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D-----------~~ 307 (369)
..+.+++|+|+| .|+.++ .++.++||++. .+..+..+..| ...+..++|+| ++++|+.++.| +.
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS-AYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC-SEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC-CcccCCeEECC-CCCEEEEEEcCCCCCcccccCceE
Confidence 789999999999 676655 59999999986 46667788888 78899999999 99999988876 57
Q ss_pred EEEEECcCCcee--EEEEcCC-CeeeeeEcCCCCEEEEEeCCC
Q 017601 308 VFCGQWRESSKV--FAFRGDS-NWLGFSKCSNRDVLGGWSDSG 347 (369)
Q Consensus 308 i~vwd~~~~~~~--~~~~g~~-~~~~~~~~~d~~~l~sgs~dg 347 (369)
|++||+.+++.. ..+.+|. ....+...++++.|++++.+.
T Consensus 251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999887653 3343554 123344467999888777653
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9e-19 Score=167.10 Aligned_cols=244 Identities=13% Similarity=-0.006 Sum_probs=159.0
Q ss_pred ccceeeEEEEeecCCCCceEEEEEe----cCC----cEEEEEe--cCCCCCCccccccccCCCCCCCCCCeeEEEECCC-
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVD----SYG----HLIVSKL--DTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS- 159 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d----~~g----~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~- 159 (369)
+..+|+..+|.+.+ ...++++. .+| .+++||+ .++. .+.. ..+..+.. .+..+++++.
T Consensus 61 ~~~~~~~~~w~~~g---~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~-~~~~--~~~~~~~~-----~~~~~~~~~~d 129 (415)
T 2hqs_A 61 SAQEVQPAAWSALG---IDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGT-VLAQ--NSYKVNKQ-----WLRYAGHTASD 129 (415)
T ss_dssp SGGGCCHHHHHTTT---CCEEEEEEEEECTTSCEEEEEEEEECSSSTTC-EEEE--EEEEECGG-----GHHHHHHHHHH
T ss_pred cccCcCHHHHHhcC---CCEEEEEEEEECCCCeEEEEEEEEeCCCCCCC-EEee--eEEEcChh-----HHHHHHHHHHH
Confidence 45688888898874 23444432 567 8999999 6542 1111 11111111 0112333220
Q ss_pred ------------CceeEEEEecc--c---ceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCC---e
Q 017601 160 ------------QWSMAAVARSF--S---KSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC---Q 218 (369)
Q Consensus 160 ------------~~~~~a~~~s~--d---~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~---~ 218 (369)
....++.++.. + ++|++||.+. ..+.+.. +...+.... ++|++..|++++.++ +
T Consensus 130 ~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~--~~~~v~~~~---~Spdg~~la~~s~~~~~~~ 204 (415)
T 2hqs_A 130 EVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR--SPQPLMSPA---WSPDGSKLAYVTFESGRSA 204 (415)
T ss_dssp HHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEE--ESSCEEEEE---ECTTSSEEEEEECTTSSCE
T ss_pred HHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeC--CCCcceeeE---EcCCCCEEEEEEecCCCcE
Confidence 12344444222 2 7999999863 3343332 333344444 345777888888775 9
Q ss_pred EEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEE-EEeCCCc--EEEEeCCCceeeeeccccccCceEEEEEcCC
Q 017601 219 LTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIA-VAGADRT--VTIYDPRRWSALSRWVHCSKYEITGLSFSSI 294 (369)
Q Consensus 219 v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~la-sgs~D~~--v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~ 294 (369)
|++||++++ ++.. +..+ ...+.+++|+||| .|+ +++.|+. |++||+++++. ..+..| ...+.+++|+|
T Consensus 205 i~~~d~~tg---~~~~-l~~~-~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~sp- 276 (415)
T 2hqs_A 205 LVIQTLANG---AVRQ-VASF-PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG-RSNNTEPTWFP- 276 (415)
T ss_dssp EEEEETTTC---CEEE-EECC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC-SSCEEEEEECT-
T ss_pred EEEEECCCC---cEEE-eecC-CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC-CCcccceEECC-
Confidence 999999987 5543 4433 4789999999999 676 6766665 99999998765 677788 88999999999
Q ss_pred CCCEEEEEEC-CC--eEEEEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCC---CcEEEEECCCCcc
Q 017601 295 DSNYIYVQGV-DY--EVFCGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDS---GSIFVADVVAKEN 359 (369)
Q Consensus 295 d~~~l~s~s~-D~--~i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~d---g~I~iWd~~~~~~ 359 (369)
|++.|+.++. ++ .|++||+.+++.. .+..+... ..+..++||++|+.++.+ ..|++||+.+++.
T Consensus 277 dg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 277 DSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred CCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 9999998886 44 6888898877643 33334322 234457899999888764 6899999998764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=170.98 Aligned_cols=196 Identities=11% Similarity=0.024 Sum_probs=135.1
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcc------------eEEE---EeeeCCcceeeeccCCCCCCCCcEE----EE
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIH------------LRTL---RTLWYPSSLNFVQNLSPVNGGPNML----AV 213 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~------------~~~~---~~~~~~~~v~~~~~~~~~~~~~~ll----a~ 213 (369)
.+++++.+ .+++++ +.++ +++|+.... .... ....+...+..+.+ ++++..|+ ++
T Consensus 41 ~lavs~~~-~~l~~~-~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---spdg~~lav~~~sg 114 (434)
T 2oit_A 41 LLAVSNKY-GLVFAG-GASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL---SCDNLTLSACMMSS 114 (434)
T ss_dssp CEEEETTT-TEEEEE-ETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE---CTTSCEEEEEEEET
T ss_pred EEEEecCC-CEEEEE-CCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE---cCCCCEEEEEEecc
Confidence 58999954 566666 6666 899864211 1100 01112233444443 35666777 56
Q ss_pred EcCCeEEEEeCCccc-----CCce---eeeeeccCCCcEEEEEECCC-C-cEEEEeCCCcEEEEeCCCceeeeecccccc
Q 017601 214 TEGCQLTIWDLRMKE-----NGGC---LHRICGSVGDILYAVCSSST-G-NIAVAGADRTVTIYDPRRWSALSRWVHCSK 283 (369)
Q Consensus 214 s~d~~v~iwD~~~~~-----~~~~---~~~~~~~~~~~v~~v~~sp~-g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~ 283 (369)
+.|++|+|||+++.. ..++ +..+.+| ...|++++|+|+ + +|++++.||+|++||++++..+....+| .
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~-~ 192 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA-GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS-T 192 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG-GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG-G
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCC-CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC-C
Confidence 679999999987641 1111 3334444 588999999998 5 8999999999999999998777777788 8
Q ss_pred CceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCC--------eeeeeEcCCCCEEEE-EeCCCc------
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSN--------WLGFSKCSNRDVLGG-WSDSGS------ 348 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~--------~~~~~~~~d~~~l~s-gs~dg~------ 348 (369)
..|++++|+| ++++|++++.|++|++||++ ++....+..|.. ...+...+++.++++ .+.||.
T Consensus 193 ~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 193 VAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 9999999999 99999999999999999998 555555544321 123333446666543 444433
Q ss_pred EEEEECCCCc
Q 017601 349 IFVADVVAKE 358 (369)
Q Consensus 349 I~iWd~~~~~ 358 (369)
+++|++...+
T Consensus 271 v~i~~l~~~~ 280 (434)
T 2oit_A 271 VVMALLPKKE 280 (434)
T ss_dssp EEEEECCCTT
T ss_pred eEEEEeccCC
Confidence 8999998653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-17 Score=149.90 Aligned_cols=241 Identities=12% Similarity=0.028 Sum_probs=168.6
Q ss_pred CccceeeEEEEeecCCCCceEEEEEe-------cCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCce
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVD-------SYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d-------~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 162 (369)
.....+..++|+|++ ..++..+ .++.|++||..+... ...+.... ...+++|+|++..
T Consensus 38 ~~~~~~~~~~~s~dg----~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-----~~~~~~~~------~~~~~~~s~dg~~ 102 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQE----NALWLATSQSRKLDKGGVVYRLDPVTLEV-----TQAIHNDL------KPFGATINNTTQT 102 (353)
T ss_dssp EEESSEEEEEEETTT----TEEEEEECCCTTTEESEEEEEECTTTCCE-----EEEEEESS------CCCSEEEETTTTE
T ss_pred hhccCccceEECCCC----CEEEEEcCCCcCCCCCccEEEEcCCCCeE-----EEEEecCC------CcceEEECCCCCE
Confidence 344678899999984 3444433 267899999875421 11111111 1226899997665
Q ss_pred eEEEEecccceEEEEeCC--cceEEEEeeeC----------CcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCccc
Q 017601 163 MAAVARSFSKSIDVYDQD--IHLRTLRTLWY----------PSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKE 228 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~ 228 (369)
++++. ..++.|.+||.. +.+..+..... +..+.+ ++++..++.++ .++.|.+||++++
T Consensus 103 l~v~~-~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------s~dg~~l~~~~~~~~~~i~~~d~~~~- 174 (353)
T 3vgz_A 103 LWFGN-TVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA------DDATNTVYISGIGKESVIWVVDGGNI- 174 (353)
T ss_dssp EEEEE-TTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE------ETTTTEEEEEEESSSCEEEEEETTTT-
T ss_pred EEEEe-cCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE------CCCCCEEEEEecCCCceEEEEcCCCC-
Confidence 55555 778999999975 33333332111 122333 34566666655 4789999999987
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccc----cccCceEEEEEcCCCCCEEEEEE
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVH----CSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~----h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
+.+..+... ...+.+++|+|+| .+++++.++.|.+||+.+++.+..+.. + ...+.+++|+| ++++++.++
T Consensus 175 --~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~ 249 (353)
T 3vgz_A 175 --KLKTAIQNT-GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGK-EHFFINISLDT-ARQRAFITD 249 (353)
T ss_dssp --EEEEEECCC-CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSS-CCCEEEEEEET-TTTEEEEEE
T ss_pred --ceEEEecCC-CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCC-CcccceEEECC-CCCEEEEEe
Confidence 677777633 3568899999999 899999999999999999988877653 4 55688999999 999777666
Q ss_pred C-CCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEE-EEeCCCcEEEEECCCCcc
Q 017601 304 V-DYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLG-GWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 304 ~-D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~-sgs~dg~I~iWd~~~~~~ 359 (369)
. ++.|.+||..+++.+..+..... ..+...++++.++ +...++.|.+||..+++.
T Consensus 250 ~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 250 SKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp SSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 5 58999999999988887765442 3455577888555 555799999999988763
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-17 Score=151.18 Aligned_cols=235 Identities=13% Similarity=-0.012 Sum_probs=157.5
Q ss_pred EEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEE
Q 017601 98 IALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVY 177 (369)
Q Consensus 98 l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lw 177 (369)
++++++ ..++++...++.|++||..++.. ...+.... ..+..+++|+|++..++++. ..++.|.+|
T Consensus 5 ~~~~~~----~~~~v~~~~~~~v~~~d~~~~~~-----~~~~~~~~----~~~~~~~~~s~dg~~~~v~~-~~~~~i~~~ 70 (349)
T 1jmx_B 5 PALKAG----HEYMIVTNYPNNLHVVDVASDTV-----YKSCVMPD----KFGPGTAMMAPDNRTAYVLN-NHYGDIYGI 70 (349)
T ss_dssp CCCCTT----CEEEEEEETTTEEEEEETTTTEE-----EEEEECSS----CCSSCEEEECTTSSEEEEEE-TTTTEEEEE
T ss_pred ccccCC----CEEEEEeCCCCeEEEEECCCCcE-----EEEEecCC----CCCCceeEECCCCCEEEEEe-CCCCcEEEE
Confidence 345554 46788888899999999875411 11111111 00123799999665455555 788999999
Q ss_pred eCCc--ceEEEEeee-------CCcceeeeccCCCCCCCCcEEEEEcC------------CeEEEEeCCcccCCceeeee
Q 017601 178 DQDI--HLRTLRTLW-------YPSSLNFVQNLSPVNGGPNMLAVTEG------------CQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 178 d~~~--~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~lla~s~d------------~~v~iwD~~~~~~~~~~~~~ 236 (369)
|... ....+.... .+..+.+ +|++..+++++.+ +.|.+||+.+++..+.+..+
T Consensus 71 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~------spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 144 (349)
T 1jmx_B 71 DLDTCKNTFHANLSSVPGEVGRSMYSFAI------SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 144 (349)
T ss_dssp ETTTTEEEEEEESCCSTTEEEECSSCEEE------CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred eCCCCcEEEEEEcccccccccccccceEE------CCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence 9853 233332211 1233333 3567677777654 89999999886333444555
Q ss_pred eccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeecccccc---------------------------------
Q 017601 237 CGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSK--------------------------------- 283 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~--------------------------------- 283 (369)
..+ ..+.+++|+|+|.+++++. .|.+||+.+++.+..+..+ .
T Consensus 145 ~~~--~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T 1jmx_B 145 PMP--RQVYLMRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 219 (349)
T ss_dssp ECC--SSCCCEEECTTSCEEEESS--SEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred cCC--CcccceeECCCCcEEEccC--cEEEEeCCCCceecccccc-ccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence 555 5688999999994444443 4999999988776655432 1
Q ss_pred -----------------------------------CceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe
Q 017601 284 -----------------------------------YEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW 328 (369)
Q Consensus 284 -----------------------------------~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~ 328 (369)
..+.+++|+|.++++++++ ++.|.+||+.+++.+..+......
T Consensus 220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~ 297 (349)
T 1jmx_B 220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTY 297 (349)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCC
T ss_pred CCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCc
Confidence 1344566777577888877 899999999999888777644323
Q ss_pred eeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 329 LGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 329 ~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
..+...+++++|++++.++.|++||+++++.
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 4566677888888888899999999988763
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-16 Score=145.61 Aligned_cols=227 Identities=7% Similarity=0.032 Sum_probs=154.0
Q ss_pred ceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--c-eE
Q 017601 108 YMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--H-LR 184 (369)
Q Consensus 108 ~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~-~~ 184 (369)
..++++...++.|.+||..++.. ...+... .... +++|+|++..+++++ ..++.|.+||... . ..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~-----~~~~~~~-----~~~~-~~~~s~dg~~l~~~~-~~~~~i~~~d~~~~~~~~~ 77 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEI-----LNQITLG-----YDFV-DTAITSDCSNVVVTS-DFCQTLVQIETQLEPPKVV 77 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCE-----EEEEECC-----CCEE-EEEECSSSCEEEEEE-STTCEEEEEECSSSSCEEE
T ss_pred CEEEEEecCCCeEEEEeCcccce-----eeeEEcc-----CCcc-eEEEcCCCCEEEEEe-CCCCeEEEEECCCCceeEE
Confidence 46677778889999999875521 1111111 1123 799999665455554 6688999999753 2 33
Q ss_pred EEEeeeCCcc-eeeeccCCCCCCCCcEEEEEcC-C--eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEE-EE
Q 017601 185 TLRTLWYPSS-LNFVQNLSPVNGGPNMLAVTEG-C--QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIA-VA 258 (369)
Q Consensus 185 ~~~~~~~~~~-v~~~~~~~~~~~~~~lla~s~d-~--~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~la-sg 258 (369)
.+.....+.. +.+. |++..+++...+ + +|.+||+.++ +.+..+... ....+++|+|+| +++ +.
T Consensus 78 ~~~~~~~~~~~~~~s------~dg~~l~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~--~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 78 AIQEGQSSMADVDIT------PDDQFAVTVTGLNHPFNMQSYSFLKN---KFISTIPIP--YDAVGIAISPNGNGLILID 146 (331)
T ss_dssp EEEECSSCCCCEEEC------TTSSEEEECCCSSSSCEEEEEETTTT---EEEEEEECC--TTEEEEEECTTSSCEEEEE
T ss_pred ecccCCCCccceEEC------CCCCEEEEecCCCCcccEEEEECCCC---CeEEEEECC--CCccceEECCCCCEEEEEe
Confidence 3333333433 4443 456667743334 2 9999999987 677777665 677999999999 554 45
Q ss_pred eCCCc-EEEEeCCCceee----eeccccccCceEEEEEcCCCCCEEEEE-ECCCeEEEEECcCCce---eEEEEcCCCee
Q 017601 259 GADRT-VTIYDPRRWSAL----SRWVHCSKYEITGLSFSSIDSNYIYVQ-GVDYEVFCGQWRESSK---VFAFRGDSNWL 329 (369)
Q Consensus 259 s~D~~-v~vwD~~~~~~~----~~~~~h~~~~v~~l~~sp~d~~~l~s~-s~D~~i~vwd~~~~~~---~~~~~g~~~~~ 329 (369)
..++. |.+||+.....+ ...... ......++|+| ++++++.+ ..++.|++||+.+++. +..+..+....
T Consensus 147 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 224 (331)
T 3u4y_A 147 RSSANTVRRFKIDADGVLFDTGQEFISG-GTRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPG 224 (331)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEEECS-SSSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCC
T ss_pred cCCCceEEEEEECCCCcEeecCCccccC-CCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCc
Confidence 56688 999998763332 122233 45689999999 99866554 4689999999999887 77776654334
Q ss_pred eeeEcCCCCEEEEEe-CCCcEEEEECCCCcc
Q 017601 330 GFSKCSNRDVLGGWS-DSGSIFVADVVAKEN 359 (369)
Q Consensus 330 ~~~~~~d~~~l~sgs-~dg~I~iWd~~~~~~ 359 (369)
.+...+||++|+.++ .++.|.+||+++++.
T Consensus 225 ~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 225 TIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp CEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred eEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 566678999766554 578999999988764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-17 Score=148.14 Aligned_cols=241 Identities=12% Similarity=0.070 Sum_probs=152.8
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
...+ .++|+|++ ..++++...++.|++||..++.. . ...+..+.. ...+++|+|++. .++++ ..+
T Consensus 40 ~~~~-~~~~s~dg---~~l~~~~~~~~~i~~~d~~~~~~--~--~~~~~~~~~-----~~~~~~~s~dg~-~l~~~-~~~ 104 (331)
T 3u4y_A 40 YDFV-DTAITSDC---SNVVVTSDFCQTLVQIETQLEPP--K--VVAIQEGQS-----SMADVDITPDDQ-FAVTV-TGL 104 (331)
T ss_dssp CCEE-EEEECSSS---CEEEEEESTTCEEEEEECSSSSC--E--EEEEEECSS-----CCCCEEECTTSS-EEEEC-CCS
T ss_pred CCcc-eEEEcCCC---CEEEEEeCCCCeEEEEECCCCce--e--EEecccCCC-----CccceEECCCCC-EEEEe-cCC
Confidence 4455 99999984 23444555578999999976521 0 111111111 121399999655 45544 444
Q ss_pred -c--eEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCe-EEEEeCCcccCCce--eeeeeccCCC
Q 017601 172 -K--SIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQ-LTIWDLRMKENGGC--LHRICGSVGD 242 (369)
Q Consensus 172 -~--~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~-v~iwD~~~~~~~~~--~~~~~~~~~~ 242 (369)
+ .|.+||... .++.+.....+..+.+ +|++..+++++ .++. |.+||+........ ...+.. ..
T Consensus 105 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--~~ 176 (331)
T 3u4y_A 105 NHPFNMQSYSFLKNKFISTIPIPYDAVGIAI------SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG--GT 176 (331)
T ss_dssp SSSCEEEEEETTTTEEEEEEECCTTEEEEEE------CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS--SS
T ss_pred CCcccEEEEECCCCCeEEEEECCCCccceEE------CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC--CC
Confidence 3 999999853 3333322222333333 35666666654 5578 99999885411000 122222 36
Q ss_pred cEEEEEECCCC-cE-EEEeCCCcEEEEeCCCcee---eeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCC
Q 017601 243 ILYAVCSSSTG-NI-AVAGADRTVTIYDPRRWSA---LSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRES 316 (369)
Q Consensus 243 ~v~~v~~sp~g-~l-asgs~D~~v~vwD~~~~~~---~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~ 316 (369)
.+..++|+|+| ++ +++..++.|.+||+++++. +..+..+ ..+..++|+| |+++|+.++ .++.|.+||+.++
T Consensus 177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECT-TSSEEEEECSSEEEEEEEETTTT
T ss_pred CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECC-CCCEEEEEEcCCCEEEEEECCCC
Confidence 68999999999 55 4555789999999999887 7666644 6678999999 999776654 5789999999987
Q ss_pred ce--eEEEEcC----CCee----eeeEcCCCCEEEEEe-CCCcEEEEECCCCc
Q 017601 317 SK--VFAFRGD----SNWL----GFSKCSNRDVLGGWS-DSGSIFVADVVAKE 358 (369)
Q Consensus 317 ~~--~~~~~g~----~~~~----~~~~~~d~~~l~sgs-~dg~I~iWd~~~~~ 358 (369)
+. +..+..+ .... .+...+|+++|+.++ .++.|.+||+.++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 254 TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred ceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 76 4444333 1111 135567998876554 56799999998764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-16 Score=147.67 Aligned_cols=250 Identities=9% Similarity=0.028 Sum_probs=152.0
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEec---CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDS---YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+......++|+||+ . +++.+. ++.|++|++..+.... ...+..+. ....+++|+|++. .++
T Consensus 36 ~~~~~~p~~~a~spdg----~-l~~~~~~~~~~~v~~~~~~~g~~~~---~~~~~~~~-----~~p~~~a~spdg~-~l~ 101 (347)
T 3hfq_A 36 LAATQNPTYLALSAKD----C-LYSVDKEDDEGGIAAWQIDGQTAHK---LNTVVAPG-----TPPAYVAVDEARQ-LVY 101 (347)
T ss_dssp EEECSCCCCEEECTTC----E-EEEEEEETTEEEEEEEEEETTEEEE---EEEEEEES-----CCCSEEEEETTTT-EEE
T ss_pred eeccCCcceEEEccCC----e-EEEEEecCCCceEEEEEecCCcEEE---eeeeecCC-----CCCEEEEECCCCC-EEE
Confidence 3455677889999984 4 444333 6899999996441100 00111111 1234799999655 455
Q ss_pred EEecccceEEEEeCCc--ceEEEEeeeCC----------cceeeeccCCCCCCCCcEEEE-EcCCeEEEEeCCcccCCce
Q 017601 166 VARSFSKSIDVYDQDI--HLRTLRTLWYP----------SSLNFVQNLSPVNGGPNMLAV-TEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~--~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~lla~-s~d~~v~iwD~~~~~~~~~ 232 (369)
++...+++|.+||... ....+...... ..+..+. ++|++. ++++ ..++.|.+||+........
T Consensus 102 ~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~ 177 (347)
T 3hfq_A 102 SANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD---LTPDNR-LAVIDLGSDKVYVYNVSDAGQLSE 177 (347)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE---ECTTSC-EEEEETTTTEEEEEEECTTSCEEE
T ss_pred EEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE---ECCCCc-EEEEeCCCCEEEEEEECCCCcEEE
Confidence 5535789999999741 22222222111 0122222 345666 5444 4578999999983211112
Q ss_pred eeeeeccCCCcEEEEEECCCC-cEEE-EeCCCcEEEEeCCC--cee--eeecccccc------CceEEEEEcCCCCCEE-
Q 017601 233 LHRICGSVGDILYAVCSSSTG-NIAV-AGADRTVTIYDPRR--WSA--LSRWVHCSK------YEITGLSFSSIDSNYI- 299 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g-~las-gs~D~~v~vwD~~~--~~~--~~~~~~h~~------~~v~~l~~sp~d~~~l- 299 (369)
+..+....+..+..++|+|+| ++++ +..++.|.+||+.. ++. +..+... . ..+..++|+| ||++|
T Consensus 178 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~i~~sp-dG~~l~ 255 (347)
T 3hfq_A 178 QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI-PADYTAHNGAAAIRLSH-DGHFLY 255 (347)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS-CTTCCSCCEEEEEEECT-TSCEEE
T ss_pred eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec-CCCCCCCCcceeEEECC-CCCEEE
Confidence 222232213567889999999 5555 56789999999874 432 2233222 1 3588999999 99977
Q ss_pred EEEECCCeEEEEECcC---CceeEEEEcCCC-eeeeeEcCCCCEEEEEeCC-CcEEEE--ECCCCc
Q 017601 300 YVQGVDYEVFCGQWRE---SSKVFAFRGDSN-WLGFSKCSNRDVLGGWSDS-GSIFVA--DVVAKE 358 (369)
Q Consensus 300 ~s~s~D~~i~vwd~~~---~~~~~~~~g~~~-~~~~~~~~d~~~l~sgs~d-g~I~iW--d~~~~~ 358 (369)
++...++.|.+||+.. .+.+..+..+.. ...+...+||++|++++.+ +.|.+| |.++++
T Consensus 256 v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 256 VSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp EEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 5566789999999973 244555554331 1356667899988877764 899999 555554
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=169.12 Aligned_cols=241 Identities=10% Similarity=0.022 Sum_probs=161.6
Q ss_pred cceeeEEEEeecCCCCceEEEEEec-CC-----cEEEEEecCCCCCCccccccccCCC----------CC-------CCC
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDS-YG-----HLIVSKLDTSGKDVDRLTYSVLPQD----------CG-------VGE 148 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~-~g-----~v~~~~~~~~~~~~~~~~~~~~~~~----------~~-------~~~ 148 (369)
...|.+++||||+ ..|++++. ++ .|++||+.++... . ........ .. .+.
T Consensus 36 ~~~~~~~~~SpdG----~~la~~~~~d~~~~~~~i~~~d~~~g~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (741)
T 2ecf_A 36 GPTLMKPKVAPDG----SRVTFLRGKDSDRNQLDLWSYDIGSGQTR-L--LVDSKVVLPGTETLSDEEKARRERQRIAAM 108 (741)
T ss_dssp CCCCEEEEECTTS----SEEEEEECCSSCTTEEEEEEEETTTCCEE-E--EECGGGTC--------------------CC
T ss_pred CCCCCCceEecCC----CEEEEEeccCCCCcccEEEEEECCCCcee-E--ccchhhcccccccccchhhhhhhhhhhccc
Confidence 4568999999984 67777776 77 8999998765210 0 00000000 00 000
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcc----eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeC
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH----LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDL 224 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~ 224 (369)
.++.+++|+|++ ..++++ +. ++|.+||.... .+.+. .+...+.... ++||+..|+.++ ++.|.+||+
T Consensus 109 ~~v~~~~~SpDg-~~l~~~-~~-~~i~~~d~~~~~~~~~~~l~--~~~~~~~~~~---~SPDG~~la~~~-~~~i~~~d~ 179 (741)
T 2ecf_A 109 TGIVDYQWSPDA-QRLLFP-LG-GELYLYDLKQEGKAAVRQLT--HGEGFATDAK---LSPKGGFVSFIR-GRNLWVIDL 179 (741)
T ss_dssp EESCCCEECTTS-SEEEEE-ET-TEEEEEESSSCSTTSCCBCC--CSSSCEEEEE---ECTTSSEEEEEE-TTEEEEEET
T ss_pred cCcceeEECCCC-CEEEEE-eC-CcEEEEECCCCCcceEEEcc--cCCccccccc---CCCCCCEEEEEe-CCcEEEEec
Confidence 124579999955 456665 33 89999997532 33222 2223333444 346666666665 569999999
Q ss_pred CcccCCceeeeeeccCCCc----------------EEEEEECCCC-cEEEEeCCC-------------------------
Q 017601 225 RMKENGGCLHRICGSVGDI----------------LYAVCSSSTG-NIAVAGADR------------------------- 262 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~----------------v~~v~~sp~g-~lasgs~D~------------------------- 262 (369)
.++ +.......+ ... +.+++||||| +|++++.|+
T Consensus 180 ~~g---~~~~~~~~~-~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 180 ASG---RQMQLTADG-STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp TTT---EEEECCCCC-CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred CCC---CEEEeccCC-ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 876 444333222 121 4779999999 899888766
Q ss_pred --------cEEEEeCCC-ceeeeecc--ccccCceEEEEEcCCCCCEEEEEEC-----CCeEEEEECcCCceeEEEEcCC
Q 017601 263 --------TVTIYDPRR-WSALSRWV--HCSKYEITGLSFSSIDSNYIYVQGV-----DYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 263 --------~v~vwD~~~-~~~~~~~~--~h~~~~v~~l~~sp~d~~~l~s~s~-----D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
.|.+||+.+ ++...... .| ...+.+++| | ||++|+.++. +..|++||+.++++...+..+.
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 332 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQ-DIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS 332 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCEEECCCSCS-SEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred CCCCCCeeEEEEEECCCCCceEEecCCCCc-ceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC
Confidence 789999988 77654433 46 788999999 9 9999997764 5689999999998877776554
Q ss_pred -Ce----eeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 327 -NW----LGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 327 -~~----~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
.| ..+..++||+++++++.||.+++|.+.
T Consensus 333 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 333 PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred CCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 12 244557799999999999988888765
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=164.03 Aligned_cols=229 Identities=12% Similarity=-0.032 Sum_probs=156.6
Q ss_pred cceeeEEEEeecCCCCceEEEEEec-CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDS-YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~-~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
...|++++|+||+ ..||.++. +|++.+|+++.+. ...+..+. ...+.+++|+|+ .+++++ +.
T Consensus 21 ~~~~~~~~~~~DG----~~la~~s~~~g~~~lw~~~~g~------~~~lt~~~----~~~~~~~~~spd--~~l~~~-~~ 83 (582)
T 3o4h_A 21 AVEKYSLQGVVDG----DKLLVVGFSEGSVNAYLYDGGE------TVKLNREP----INSVLDPHYGVG--RVILVR-DV 83 (582)
T ss_dssp HSCEEEEEEEETT----TEEEEEEEETTEEEEEEEETTE------EEECCSSC----CSEECEECTTCS--EEEEEE-EC
T ss_pred ccchheeecCCCC----CeEEEEEccCCceeEEEEcCCC------cEeeeccc----ccccccccCCCC--eEEEEe-cc
Confidence 4679999999995 57776655 8999999985431 11222111 123457999995 555555 33
Q ss_pred ---cceEEEE--eC--CcceEEEEeeeCCcceeeeccCCCCCCCCc-EEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 171 ---SKSIDVY--DQ--DIHLRTLRTLWYPSSLNFVQNLSPVNGGPN-MLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 171 ---d~~i~lw--d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
+...+|| +. ......+..........+. +++.. +++.+.++.+.|||+.++ +......++ .
T Consensus 84 ~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s------~dg~~~~~~s~~~~~~~l~d~~~g---~~~~l~~~~--~ 152 (582)
T 3o4h_A 84 SKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGV------DTGEAVVFTGATEDRVALYALDGG---GLRELARLP--G 152 (582)
T ss_dssp STTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEE------ECSSCEEEEEECSSCEEEEEEETT---EEEEEEEES--S
T ss_pred CCCCcceEEEEEeccCCCccccccCCCCceeeeeC------CCCCeEEEEecCCCCceEEEccCC---cEEEeecCC--C
Confidence 4556665 44 3222222111111222222 34443 444445555669999877 444433343 3
Q ss_pred cEEEEEECCCC-cEEEEeCC----CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCC--eEEEEECcC
Q 017601 243 ILYAVCSSSTG-NIAVAGAD----RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY--EVFCGQWRE 315 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D----~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~--~i~vwd~~~ 315 (369)
.+++||||| +||+++.| +.|++||+.+++.. .+..| ...+.+++||| ||+.|+++..|+ .|++||+.+
T Consensus 153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~-~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSG-EGSFSSASISP-GMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCS-SCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTT
T ss_pred --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecC-CCccccceECC-CCCEEEEccCCCeeEEEEEcCCC
Confidence 889999999 88888777 78999999887654 67788 88899999999 999999888888 899999999
Q ss_pred CceeEEEEcCCCe-eeee--------EcCCCCEEEEEeCCCcEEEEEC
Q 017601 316 SSKVFAFRGDSNW-LGFS--------KCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 316 ~~~~~~~~g~~~~-~~~~--------~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
++.. .+.+|... ..+. .++||.++++++.|+++++|++
T Consensus 228 ~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 228 GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 8877 66666521 1233 5779999999999999999999
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=158.04 Aligned_cols=211 Identities=11% Similarity=0.020 Sum_probs=138.0
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC--C-c--cccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD--V-D--RLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~--~-~--~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
...++.|++++++ .++++++.+| +.+|+....... . . .......+...-.....+.+++|+|++ .++|+
T Consensus 36 ~~~~n~lavs~~~----~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKY----GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN-LTLSA 109 (434)
T ss_dssp CSCCBCEEEETTT----TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS-CEEEE
T ss_pred CCCccEEEEecCC----CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC-CEEEE
Confidence 3468999999874 5777777777 888876421100 0 0 000000000000012347789999965 56663
Q ss_pred ---EecccceEEEEeCCcc----------eEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 167 ---ARSFSKSIDVYDQDIH----------LRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 167 ---~~s~d~~i~lwd~~~~----------~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
+++.|++|+|||.... +..+.... |...+..+.+.|. ++..|++++.|++|+|||++++ ..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~--~~~~las~s~Dg~v~iwD~~~~---~~ 184 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT--VPSMVAVCLADGSIAVLQVTET---VK 184 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS--CTTEEEEEETTSCEEEEEESSS---EE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC--CCCEEEEEECCCeEEEEEcCCC---cc
Confidence 3489999999997432 11223222 3455666665432 1457888999999999999987 55
Q ss_pred eeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccc------cCceEEEEEcCCCCCEEEEE-EC
Q 017601 233 LHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCS------KYEITGLSFSSIDSNYIYVQ-GV 304 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~------~~~v~~l~~sp~d~~~l~s~-s~ 304 (369)
+.....+ ...|++++|+|+| +|++|+.||+|++||++ ++....+..|. ...|.+++|++ ++.++++. +.
T Consensus 185 ~~~~~~~-~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAA 261 (434)
T ss_dssp EEEEECG-GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEET
T ss_pred eeeccCC-CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-CceEEEEEccC
Confidence 5444444 4789999999999 99999999999999998 55555544330 33899999999 87777553 34
Q ss_pred CC------eEEEEECcCC
Q 017601 305 DY------EVFCGQWRES 316 (369)
Q Consensus 305 D~------~i~vwd~~~~ 316 (369)
|+ .+++||+++.
T Consensus 262 dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TCCSSSCCEEEEEECCCT
T ss_pred CCccCCCCceEEEEeccC
Confidence 43 3899999863
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.1e-16 Score=141.58 Aligned_cols=237 Identities=11% Similarity=-0.015 Sum_probs=158.1
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCC--CCCCCeeEEEECCCCceeEEEEe
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCG--VGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
+...+..++|+|++ ..+.++...++.|++||..++.. + ........... .......+++|+|++..++++..
T Consensus 87 ~~~~~~~~~~s~dg---~~l~v~~~~~~~v~~~d~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 160 (353)
T 3vgz_A 87 NDLKPFGATINNTT---QTLWFGNTVNSAVTAIDAKTGEV-K--GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI 160 (353)
T ss_dssp ESSCCCSEEEETTT---TEEEEEETTTTEEEEEETTTCCE-E--EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE
T ss_pred cCCCcceEEECCCC---CEEEEEecCCCEEEEEeCCCCee-E--EEEecCCCccccccCCCCCceEEECCCCCEEEEEec
Confidence 34557889999984 34556666678999999875521 0 11111100000 00011357999997665544442
Q ss_pred cccceEEEEeCCcc--eEEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc---CCC
Q 017601 169 SFSKSIDVYDQDIH--LRTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS---VGD 242 (369)
Q Consensus 169 s~d~~i~lwd~~~~--~~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~---~~~ 242 (369)
+.++.|.+||.... ...+. ....+..+.+. +++..+++++.++.|.+||+.++ +.+..+... ...
T Consensus 161 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s------~dg~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~ 231 (353)
T 3vgz_A 161 GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD------SEGKRLYTTNADGELITIDTADN---KILSRKKLLDDGKEH 231 (353)
T ss_dssp SSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE------TTTTEEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCC
T ss_pred CCCceEEEEcCCCCceEEEecCCCCccceEEEC------CCCCEEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCc
Confidence 45889999998633 33332 11123444443 46777888888999999999988 666655531 035
Q ss_pred cEEEEEECCCC-cEEEEe-CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCcee
Q 017601 243 ILYAVCSSSTG-NIAVAG-ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESSKV 319 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs-~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~~~ 319 (369)
.+.+++|+|+| .+++++ .++.|.+||+.+++.+..+... . ...++|+| ++++++.++ .++.|.+||..+++.+
T Consensus 232 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~--~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 232 FFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP-E--SLAVLFNP-ARNEAYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp CEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS-S--CCCEEEET-TTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-C--CceEEECC-CCCEEEEEECCCCeEEEEECCCCeEE
Confidence 68889999999 565555 4599999999999888877754 3 26799999 998665555 6899999999999988
Q ss_pred EEEEcCCCeeeeeEcCCCCEEEEEeCC
Q 017601 320 FAFRGDSNWLGFSKCSNRDVLGGWSDS 346 (369)
Q Consensus 320 ~~~~g~~~~~~~~~~~d~~~l~sgs~d 346 (369)
..+........+...+|+++|+.+..+
T Consensus 308 ~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 308 KTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred EEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 888765533455567788876666555
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-16 Score=143.13 Aligned_cols=232 Identities=14% Similarity=0.070 Sum_probs=144.7
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCC---cceEE
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD---IHLRT 185 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~---~~~~~ 185 (369)
.++++...++.|++|+++.... ... ...+ ++. ....+++|+|++. .++++...++.|.+|+++ .....
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~-~~~-~~~~-~~~-----~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~~~~~~ 76 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGA-LTL-TQVV-DVP-----GQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDDGALTF 76 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSC-EEE-EEEE-ECS-----SCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCc-EEE-eeeE-ecC-----CCCceEEECCCCC-EEEEeecCCCeEEEEEecCCCCceee
Confidence 4555557789999999964211 100 0111 111 1234699999655 455552445999999875 12222
Q ss_pred EEeeeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe-CCC
Q 017601 186 LRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG-ADR 262 (369)
Q Consensus 186 ~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs-~D~ 262 (369)
+........+..+. +++++..+++++. ++.|.+||+..+.....+..+... ..+.+++|+|+| .+++++ .++
T Consensus 77 ~~~~~~~~~~~~~~---~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~ 151 (343)
T 1ri6_A 77 AAESALPGSLTHIS---TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL--DGCHSANISPDNRTLWVPALKQD 151 (343)
T ss_dssp EEEEECSSCCSEEE---ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC--TTBCCCEECTTSSEEEEEEGGGT
T ss_pred ccccccCCCCcEEE---EcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC--CCceEEEECCCCCEEEEecCCCC
Confidence 32222222222222 2355666766654 889999999422111455555554 678999999999 777776 899
Q ss_pred cEEEEeCCC-ceeee----eccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcC--Cce--eEEEE----cCC--
Q 017601 263 TVTIYDPRR-WSALS----RWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRE--SSK--VFAFR----GDS-- 326 (369)
Q Consensus 263 ~v~vwD~~~-~~~~~----~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~--~~~--~~~~~----g~~-- 326 (369)
.|.+||+.+ ++... .+..+....+..++|+| ++++++.++ .++.|++||+.. ++. ...+. ++.
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT 230 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred EEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence 999999987 54432 23333145788999999 999776555 789999999954 332 23332 111
Q ss_pred -CeeeeeEcCCCCEEE-EEeCCCcEEEEECC
Q 017601 327 -NWLGFSKCSNRDVLG-GWSDSGSIFVADVV 355 (369)
Q Consensus 327 -~~~~~~~~~d~~~l~-sgs~dg~I~iWd~~ 355 (369)
....+...+++++|+ +...++.|++||+.
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 112355577888776 56689999999998
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-17 Score=164.68 Aligned_cols=240 Identities=10% Similarity=-0.029 Sum_probs=155.9
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc--
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF-- 170 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~-- 170 (369)
..+.+++|+||+ .++++ +.+|.|++||+.++.. ...+..+... ...+.+++|||++ ..++++ +.
T Consensus 17 ~~~~~~~~spdg----~~~~~-~~dg~i~~~d~~~g~~-----~~~~~~~~~~--~~~v~~~~~SpDg-~~l~~~-~~~~ 82 (723)
T 1xfd_A 17 IHDPEAKWISDT----EFIYR-EQKGTVRLWNVETNTS-----TVLIEGKKIE--SLRAIRYEISPDR-EYALFS-YNVE 82 (723)
T ss_dssp CCCCCCCBSSSS----CBCCC-CSSSCEEEBCGGGCCC-----EEEECTTTTT--TTTCSEEEECTTS-SEEEEE-ESCC
T ss_pred ccccccEEcCCC----cEEEE-eCCCCEEEEECCCCcE-----EEEecccccc--ccccceEEECCCC-CEEEEE-ecCc
Confidence 457789999985 45555 7889999999986621 1112222110 0124589999955 456665 33
Q ss_pred -------cceEEEEeCCcc-eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 171 -------SKSIDVYDQDIH-LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 171 -------d~~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
++.+.+||.... .+.+..... .-..+....++||+..|+.++. +.|++||+.++ +..+....+ ..
T Consensus 83 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~--~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g---~~~~~~~~~-~~ 155 (723)
T 1xfd_A 83 PIYQHSYTGYYVLSKIPHGDPQSLDPPEV--SNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK---QAIRVVSTG-KE 155 (723)
T ss_dssp CCSSSCCCSEEEEEESSSCCCEECCCTTC--CSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS---CCEEEECCC-BT
T ss_pred cceeecceeeEEEEECCCCceEeccCCcc--ccccccccEECCCCCEEEEEEC-CeEEEEECCCC---ceEEEecCC-CC
Confidence 378889997632 222322111 1011222335677777777765 79999999887 444433322 12
Q ss_pred ------------------cEEEEEECCCC-cEEEEeCCC----------------------------------cEEEEeC
Q 017601 243 ------------------ILYAVCSSSTG-NIAVAGADR----------------------------------TVTIYDP 269 (369)
Q Consensus 243 ------------------~v~~v~~sp~g-~lasgs~D~----------------------------------~v~vwD~ 269 (369)
.+.+++||||| .|++++.|+ +|++||+
T Consensus 156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~ 235 (723)
T 1xfd_A 156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL 235 (723)
T ss_dssp TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred CceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence 23789999999 888887553 7999999
Q ss_pred CCceeeeecccc-----ccCceEEEEEcCCCCCEEEEEEC----CCeEEEEECcCCceeEEEEc-CCCee-----eeeEc
Q 017601 270 RRWSALSRWVHC-----SKYEITGLSFSSIDSNYIYVQGV----DYEVFCGQWRESSKVFAFRG-DSNWL-----GFSKC 334 (369)
Q Consensus 270 ~~~~~~~~~~~h-----~~~~v~~l~~sp~d~~~l~s~s~----D~~i~vwd~~~~~~~~~~~g-~~~~~-----~~~~~ 334 (369)
.+++....+..+ ....+.+++||| ||++|++.+. +..|++||+.++++...+.. +..|. .+..+
T Consensus 236 ~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s 314 (723)
T 1xfd_A 236 NGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFS 314 (723)
T ss_dssp SSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEEC
T ss_pred CCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEc
Confidence 988765555543 046789999999 9998877653 35899999999887776644 33331 34557
Q ss_pred CCCCEEEE--EeCCC------cEEEEEC
Q 017601 335 SNRDVLGG--WSDSG------SIFVADV 354 (369)
Q Consensus 335 ~d~~~l~s--gs~dg------~I~iWd~ 354 (369)
+||+.|+. ...++ .|++||+
T Consensus 315 pdg~~l~~~~~~~~~~~~~~~~l~~~d~ 342 (723)
T 1xfd_A 315 KDGRKFFFIRAIPQGGRGKFYHITVSSS 342 (723)
T ss_dssp TTSCSEEEEEEECCSSSSCEEEEEEECS
T ss_pred CCCCeEEEEEecccCCCcceeEEEEEec
Confidence 79986664 55677 5777883
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-15 Score=153.79 Aligned_cols=249 Identities=11% Similarity=0.076 Sum_probs=158.7
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecC-----CCCCCccccccccCCCCCCC---------CCCeeEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDT-----SGKDVDRLTYSVLPQDCGVG---------EGSWSGL 154 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---------~~~~~~l 154 (369)
..|.+.+.+++||||+ ..++.. .+++|++|++.+ +.. . .........+. .....++
T Consensus 117 ~~~~~~~~~~~~SpdG----~~la~~-~~~~i~v~~~~~~~~~~g~~-~----~~~~~~~~~~~~g~~~~~ee~~~~~~~ 186 (706)
T 2z3z_A 117 FDTNEETASLDFSPVG----DRVAYV-RNHNLYIARGGKLGEGMSRA-I----AVTIDGTETLVYGQAVHQREFGIEKGT 186 (706)
T ss_dssp ECCTTCCTTCEECTTS----SEEEEE-ETTEEEEEECBCTTSCCCCC-E----ESCSCCBTTEEESSCCGGGCTTCCCSE
T ss_pred cCCcccccCCcCCCCC----CEEEEE-ECCeEEEEecCcccccCCCc-E----EeccCCCCCeEcccchhhhhcCCCceE
Confidence 3456778999999985 466664 568999999986 321 0 00000000000 0012479
Q ss_pred EECCCCceeEEEEec---------------------------------ccceEEEEeCCcce-EEEEee-eCCcceeeec
Q 017601 155 CFSPSQWSMAAVARS---------------------------------FSKSIDVYDQDIHL-RTLRTL-WYPSSLNFVQ 199 (369)
Q Consensus 155 ~~~p~~~~~~a~~~s---------------------------------~d~~i~lwd~~~~~-~~~~~~-~~~~~v~~~~ 199 (369)
+|+|++ ..|+++ + .+..|.+||..... ..+... .+...+..+.
T Consensus 187 ~~SpDg-~~la~~-~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
T 2z3z_A 187 FWSPKG-SCLAFY-RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS 264 (706)
T ss_dssp EECTTS-SEEEEE-EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred EECCCC-CEEEEE-EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence 999955 466666 3 45789999986432 222111 1222333333
Q ss_pred cCCCCCCCCcEEEEEcCC-----eEEEEeCCcccCCceeeeee-ccCCC---cEEEEEECC--CC-cEEEEeCCCcEEEE
Q 017601 200 NLSPVNGGPNMLAVTEGC-----QLTIWDLRMKENGGCLHRIC-GSVGD---ILYAVCSSS--TG-NIAVAGADRTVTIY 267 (369)
Q Consensus 200 ~~~~~~~~~~lla~s~d~-----~v~iwD~~~~~~~~~~~~~~-~~~~~---~v~~v~~sp--~g-~lasgs~D~~v~vw 267 (369)
++||+..+++++.++ +|.+||+.++ +....+. ..... .+.+++|+| +| ++++++.|+.++||
T Consensus 265 ---~spdg~~l~~~~~~~~~~~~~v~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 265 ---WSPDENILYVAEVNRAQNECKVNAYDAETG---RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY 338 (706)
T ss_dssp ---ECTTSSEEEEEEECTTSCEEEEEEEETTTC---CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred ---EECCCCEEEEEEeCCCCCeeEEEEEECCCC---ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence 345677788777665 8999999887 3333322 11012 246789999 99 88999999999999
Q ss_pred eCC-CceeeeeccccccCceEE-EEEcCCCCCEEEEEECC-C----eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEE
Q 017601 268 DPR-RWSALSRWVHCSKYEITG-LSFSSIDSNYIYVQGVD-Y----EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVL 340 (369)
Q Consensus 268 D~~-~~~~~~~~~~h~~~~v~~-l~~sp~d~~~l~s~s~D-~----~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l 340 (369)
++. ++..+..+..| ...+.+ ++|+| +++.|+.++.+ + .|..||+.+++. ..+........+..++||++|
T Consensus 339 ~~~~~~~~~~~l~~~-~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~spdg~~l 415 (706)
T 2z3z_A 339 LYDTTGRLIRQVTKG-EWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKT-KDLTPESGMHRTQLSPDGSAI 415 (706)
T ss_dssp EEETTSCEEEECCCS-SSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCC-EESCCSSSEEEEEECTTSSEE
T ss_pred EEECCCCEEEecCCC-CeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCc-eeccCCCceEEEEECCCCCEE
Confidence 886 57777888888 788887 79999 99887766554 3 677777766552 333222223445557899987
Q ss_pred EEEeCC----CcEEEEECCCCc
Q 017601 341 GGWSDS----GSIFVADVVAKE 358 (369)
Q Consensus 341 ~sgs~d----g~I~iWd~~~~~ 358 (369)
+..+.+ +.|++||+.+++
T Consensus 416 ~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 416 IDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEECSSCSCEEEEEESSSCE
T ss_pred EEEecCCCCCcEEEEEECCCCe
Confidence 766443 569999998775
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-16 Score=140.41 Aligned_cols=224 Identities=14% Similarity=0.017 Sum_probs=146.0
Q ss_pred EEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc-ce-EEEEeee
Q 017601 113 SVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI-HL-RTLRTLW 190 (369)
Q Consensus 113 s~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~-~~~~~~~ 190 (369)
+.+.++.|++||+.++.. ..+..+ ...+.+++|+|++ ..++++ + ++.|.+||... .. ..+....
T Consensus 17 ~~~~~~~i~~~d~~~~~~------~~~~~~-----~~~v~~~~~spdg-~~l~~~-~-~~~i~~~d~~~~~~~~~~~~~~ 82 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM------RVVWQT-----PELFEAPNWSPDG-KYLLLN-S-EGLLYRLSLAGDPSPEKVDTGF 82 (297)
T ss_dssp -CCCCEEEEEEETTTTEE------EEEEEE-----SSCCEEEEECTTS-SEEEEE-E-TTEEEEEESSSCCSCEECCCTT
T ss_pred CCCcceeEEEEeCCCCce------eeeccC-----CcceEeeEECCCC-CEEEEE-c-CCeEEEEeCCCCCCceEecccc
Confidence 345678999999875411 111112 1235689999954 466666 3 78999999765 22 2111111
Q ss_pred CCcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEE-EEeCCCcEEE
Q 017601 191 YPSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIA-VAGADRTVTI 266 (369)
Q Consensus 191 ~~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~la-sgs~D~~v~v 266 (369)
....+..+. ++|++..+++++ .++..+||++.... .....+... ..+++++|+|++ .|+ +++.|+.++|
T Consensus 83 ~~~~~~~~~---~spdg~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~l 155 (297)
T 2ojh_A 83 ATICNNDHG---ISPDGALYAISDKVEFGKSAIYLLPSTG--GTPRLMTKN--LPSYWHGWSPDGKSFTYCGIRDQVFDI 155 (297)
T ss_dssp CCCBCSCCE---ECTTSSEEEEEECTTTSSCEEEEEETTC--CCCEECCSS--SSEEEEEECTTSSEEEEEEEETTEEEE
T ss_pred ccccccceE---ECCCCCEEEEEEeCCCCcceEEEEECCC--CceEEeecC--CCccceEECCCCCEEEEEECCCCceEE
Confidence 112222222 345677788777 34455555543221 234445554 568999999999 665 7888999999
Q ss_pred EeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECc-CCceeEEEEcCCCe-eeeeEcCCCCEEEE
Q 017601 267 YDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWR-ESSKVFAFRGDSNW-LGFSKCSNRDVLGG 342 (369)
Q Consensus 267 wD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~-~~~~~~~~~g~~~~-~~~~~~~d~~~l~s 342 (369)
|++.. ......+..| ...+.++.|+| ++++|+.++ .|+.+++|++. .+.....+..|... ..+...+++++|+.
T Consensus 156 ~~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 156 YSMDIDSGVETRLTHG-EGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp EEEETTTCCEEECCCS-SSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred EEEECCCCcceEcccC-CCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEE
Confidence 99643 3345566777 78899999999 999888766 58999999987 45556666665511 22334679999988
Q ss_pred EeCC-----------CcEEEEECCCCcc
Q 017601 343 WSDS-----------GSIFVADVVAKEN 359 (369)
Q Consensus 343 gs~d-----------g~I~iWd~~~~~~ 359 (369)
++.+ +.|++||+.+++.
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 234 VSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp EEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred EEcCCCCCcccccCceEEEEEecCCCCc
Confidence 8876 5699999988753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-16 Score=160.95 Aligned_cols=239 Identities=9% Similarity=-0.076 Sum_probs=156.0
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
..|.+++||||+ ..|+.++. +.|++||+.++... ....+..+ ...+..++|+|++ ..+|.+ + ++
T Consensus 109 ~~v~~~~~SpDg----~~l~~~~~-~~i~~~d~~~~~~~---~~~~l~~~-----~~~~~~~~~SPDG-~~la~~-~-~~ 172 (741)
T 2ecf_A 109 TGIVDYQWSPDA----QRLLFPLG-GELYLYDLKQEGKA---AVRQLTHG-----EGFATDAKLSPKG-GFVSFI-R-GR 172 (741)
T ss_dssp EESCCCEECTTS----SEEEEEET-TEEEEEESSSCSTT---SCCBCCCS-----SSCEEEEEECTTS-SEEEEE-E-TT
T ss_pred cCcceeEECCCC----CEEEEEeC-CcEEEEECCCCCcc---eEEEcccC-----CcccccccCCCCC-CEEEEE-e-CC
Confidence 568999999985 56666655 89999999754100 01112111 1235689999955 456666 3 56
Q ss_pred eEEEEeCCcc-eEEEEeeeCCccee-------------eeccCCCCCCCCcEEEEEcCC---------------------
Q 017601 173 SIDVYDQDIH-LRTLRTLWYPSSLN-------------FVQNLSPVNGGPNMLAVTEGC--------------------- 217 (369)
Q Consensus 173 ~i~lwd~~~~-~~~~~~~~~~~~v~-------------~~~~~~~~~~~~~lla~s~d~--------------------- 217 (369)
.|.+||.... ...+... +...+. ......++||+..|++++.|+
T Consensus 173 ~i~~~d~~~g~~~~~~~~-~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 173 NLWVIDLASGRQMQLTAD-GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp EEEEEETTTTEEEECCCC-CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred cEEEEecCCCCEEEeccC-CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 8999998642 2222111 111000 001122456788888887665
Q ss_pred ------------eEEEEeCCc-ccCCceeeeee--ccCCCcEEEEEECCCC-cEEEEeC-----CCcEEEEeCCCceeee
Q 017601 218 ------------QLTIWDLRM-KENGGCLHRIC--GSVGDILYAVCSSSTG-NIAVAGA-----DRTVTIYDPRRWSALS 276 (369)
Q Consensus 218 ------------~v~iwD~~~-~~~~~~~~~~~--~~~~~~v~~v~~sp~g-~lasgs~-----D~~v~vwD~~~~~~~~ 276 (369)
.|.+||+.+ + +...... .+ ...+.+++| ||| .|++++. +..|.+||+.+++...
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~---~~~~~~~~~~~-~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~ 326 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQA---QTQWIDLGKEQ-DIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV 326 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTC---CCEEECCCSCS-SEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred ecCCCCCCCCeeEEEEEECCCCC---ceEEecCCCCc-ceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence 889999988 6 4333221 12 477999999 999 7776553 5689999999988877
Q ss_pred eccccccC----ceEEEEEcCCCCCEEEEEECCCeEEEEECc-CCceeEEEEcCCC-eeee-eEcCCCCEE-EEEeCCC-
Q 017601 277 RWVHCSKY----EITGLSFSSIDSNYIYVQGVDYEVFCGQWR-ESSKVFAFRGDSN-WLGF-SKCSNRDVL-GGWSDSG- 347 (369)
Q Consensus 277 ~~~~h~~~----~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~-~~~~~~~~~g~~~-~~~~-~~~~d~~~l-~sgs~dg- 347 (369)
.+..+ .. .+.+++|+| |++++++++.|+.++||.+. .+. ...+..+.. ...+ ..++|++.| ++++.++
T Consensus 327 ~~~~~-~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~ 403 (741)
T 2ecf_A 327 LAHET-SPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESA 403 (741)
T ss_dssp EEEEE-CSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCT
T ss_pred EEEcC-CCCcCCcCCceEECC-CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCC
Confidence 77666 43 456899999 99999999999988888776 344 566655542 1233 246788866 4566666
Q ss_pred -cEEEEECCC
Q 017601 348 -SIFVADVVA 356 (369)
Q Consensus 348 -~I~iWd~~~ 356 (369)
.+++|++..
T Consensus 404 ~~~~l~~~~~ 413 (741)
T 2ecf_A 404 RESQIYAVPL 413 (741)
T ss_dssp TCBEEEEEET
T ss_pred ceEEEEEEEc
Confidence 899999865
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-16 Score=156.50 Aligned_cols=231 Identities=13% Similarity=-0.007 Sum_probs=153.8
Q ss_pred CCcc-ceeeEEEEeecCCCCceEEEEEec---CCcEEEEEecC--CCCCCccccccccCCCCCCCCCCeeEEEECCCCce
Q 017601 89 CPHR-SEVQSIALAETDSSGYMVLGSVDS---YGHLIVSKLDT--SGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 89 ~~H~-~~V~~l~~s~~~~~~~~~las~d~---~g~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 162 (369)
..|. ..|.+++|+|| .++++.+. +....+|.+.. ... ...+... .+....+|+|++..
T Consensus 60 t~~~~~~~~~~~~spd-----~~l~~~~~~~g~~~~~l~~~~~~~~g~-----~~~l~~~------~~~~~~~~s~dg~~ 123 (582)
T 3o4h_A 60 NREPINSVLDPHYGVG-----RVILVRDVSKGAEQHALFKVNTSRPGE-----EQRLEAV------KPMRILSGVDTGEA 123 (582)
T ss_dssp CSSCCSEECEECTTCS-----EEEEEEECSTTSCCEEEEEEETTSTTC-----CEECTTS------CSBEEEEEEECSSC
T ss_pred ecccccccccccCCCC-----eEEEEeccCCCCcceEEEEEeccCCCc-----cccccCC------CCceeeeeCCCCCe
Confidence 3454 68999999986 46776664 44455555543 211 1111111 12234688887665
Q ss_pred eEEEEecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcC----CeEEEEeCCcccCCceeeeee
Q 017601 163 MAAVARSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEG----CQLTIWDLRMKENGGCLHRIC 237 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d----~~v~iwD~~~~~~~~~~~~~~ 237 (369)
+++++.+.++ +.|||... ..+.+... ....+.+ +|||..+++++.+ .+|.+||+.++ +. ..+.
T Consensus 124 ~~~~s~~~~~-~~l~d~~~g~~~~l~~~-~~~~~~~------spDG~~la~~~~~~~~~~~i~~~d~~~g---~~-~~l~ 191 (582)
T 3o4h_A 124 VVFTGATEDR-VALYALDGGGLRELARL-PGFGFVS------DIRGDLIAGLGFFGGGRVSLFTSNLSSG---GL-RVFD 191 (582)
T ss_dssp EEEEEECSSC-EEEEEEETTEEEEEEEE-SSCEEEE------EEETTEEEEEEEEETTEEEEEEEETTTC---CC-EEEC
T ss_pred EEEEecCCCC-ceEEEccCCcEEEeecC-CCceEEE------CCCCCEEEEEEEcCCCCeEEEEEcCCCC---Cc-eEee
Confidence 5555524444 45998753 22222221 2223333 3577788877766 78999999887 33 3454
Q ss_pred ccCCCcEEEEEECCCC-cEEEEeCCC--cEEEEeCCCceeeeeccccccCceEEEE--------EcCCCCCEEEEEECCC
Q 017601 238 GSVGDILYAVCSSSTG-NIAVAGADR--TVTIYDPRRWSALSRWVHCSKYEITGLS--------FSSIDSNYIYVQGVDY 306 (369)
Q Consensus 238 ~~~~~~v~~v~~sp~g-~lasgs~D~--~v~vwD~~~~~~~~~~~~h~~~~v~~l~--------~sp~d~~~l~s~s~D~ 306 (369)
.+ ...+.+++||||| .|+++..++ .|++||+.+++.. .+.+| ...+..++ |+| ||.++++++.|+
T Consensus 192 ~~-~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g 267 (582)
T 3o4h_A 192 SG-EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP-SKDFSSYRPTAITWLGYLP-DGRLAVVARREG 267 (582)
T ss_dssp CS-SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS-CSHHHHHCCSEEEEEEECT-TSCEEEEEEETT
T ss_pred cC-CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC-CcChhhhhhccccceeEcC-CCcEEEEEEcCC
Confidence 44 4778999999999 888888888 8999999998877 77788 77777777 999 999999999999
Q ss_pred eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCC---cEEEEECCC
Q 017601 307 EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSG---SIFVADVVA 356 (369)
Q Consensus 307 ~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg---~I~iWd~~~ 356 (369)
++++|++ ++......+.. ..+..+ ++.++++++.+. .+++||..+
T Consensus 268 ~~~l~~~--g~~~~~~~~~v--~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 268 RSAVFID--GERVEAPQGNH--GRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEET--TEEECCCSSEE--EEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred cEEEEEE--CCeeccCCCce--EEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999 55544322221 344445 889999888874 477777653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=159.50 Aligned_cols=241 Identities=10% Similarity=-0.043 Sum_probs=148.3
Q ss_pred eeeEEEEeecCCCCceEEEEEec---------CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 94 EVQSIALAETDSSGYMVLGSVDS---------YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~---------~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
.|.+++||||+ ..|+++.. ++.+++||+.++.. ..+.... .....+..++|||++ ..+
T Consensus 62 ~v~~~~~SpDg----~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~l~~~~--~~~~~~~~~~~SPdG-~~l 128 (723)
T 1xfd_A 62 RAIRYEISPDR----EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------QSLDPPE--VSNAKLQYAGWGPKG-QQL 128 (723)
T ss_dssp TCSEEEECTTS----SEEEEEESCCCCSSSCCCSEEEEEESSSCCC------EECCCTT--CCSCCCSBCCBCSST-TCE
T ss_pred ccceEEECCCC----CEEEEEecCccceeecceeeEEEEECCCCce------EeccCCc--cccccccccEECCCC-CEE
Confidence 49999999985 55665544 37899999986521 1111110 001113468999955 456
Q ss_pred EEEecccceEEEEeCCc-ceEEEEeeeCCcce------------------eeeccCCCCCCCCcEEEEEcCC--------
Q 017601 165 AVARSFSKSIDVYDQDI-HLRTLRTLWYPSSL------------------NFVQNLSPVNGGPNMLAVTEGC-------- 217 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~-~~~~~~~~~~~~~v------------------~~~~~~~~~~~~~~lla~s~d~-------- 217 (369)
|.+ + ++.|.+||... ....+... +...+ ..+. ++||+..|++++.|+
T Consensus 129 a~~-~-~~~i~~~~~~~g~~~~~~~~-~~~~~~~~g~~~~v~~ee~~~~~~~~~---~SpDg~~la~~~~~~~~~~~~~~ 202 (723)
T 1xfd_A 129 IFI-F-ENNIYYCAHVGKQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHW---WSPDGTRLAYAAINDSRVPIMEL 202 (723)
T ss_dssp EEE-E-TTEEEEESSSSSCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEE---ECTTSSEEEEEEEECTTSCEEEE
T ss_pred EEE-E-CCeEEEEECCCCceEEEecC-CCCCceECcccceeEEEEeccCcceEE---ECCCCCEEEEEEECCCccceEEe
Confidence 665 3 37899999753 22222111 11111 1222 346777888877543
Q ss_pred --------------------------eEEEEeCCcccCCceeeeeecc-----CCCcEEEEEECCCC-cEEEEeC----C
Q 017601 218 --------------------------QLTIWDLRMKENGGCLHRICGS-----VGDILYAVCSSSTG-NIAVAGA----D 261 (369)
Q Consensus 218 --------------------------~v~iwD~~~~~~~~~~~~~~~~-----~~~~v~~v~~sp~g-~lasgs~----D 261 (369)
+|++||+.++ +....+..+ ....+.+++||||| +|++.+. +
T Consensus 203 ~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~---~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 279 (723)
T 1xfd_A 203 PTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP---THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV 279 (723)
T ss_dssp CCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS---CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred eccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC---ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence 7999999887 443444321 03578999999999 7766543 3
Q ss_pred CcEEEEeCCCceeeeeccccccCce----EEEEEcCCCCCEEEE--EECCC------eEEEEEC-cCCc--eeEEEE-cC
Q 017601 262 RTVTIYDPRRWSALSRWVHCSKYEI----TGLSFSSIDSNYIYV--QGVDY------EVFCGQW-RESS--KVFAFR-GD 325 (369)
Q Consensus 262 ~~v~vwD~~~~~~~~~~~~h~~~~v----~~l~~sp~d~~~l~s--~s~D~------~i~vwd~-~~~~--~~~~~~-g~ 325 (369)
..|.+||+.+++....+..+....+ ..++||| ||+.|+. +..|+ .|.+||+ ..++ +...+. ++
T Consensus 280 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~ 358 (723)
T 1xfd_A 280 SILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD 358 (723)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS
T ss_pred EEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC
Confidence 5799999999887766554313444 3889999 9997765 45677 5667773 4443 134443 33
Q ss_pred CCeee-eeEcCCCCEEEEEeCC---CcEEEEECCCC
Q 017601 326 SNWLG-FSKCSNRDVLGGWSDS---GSIFVADVVAK 357 (369)
Q Consensus 326 ~~~~~-~~~~~d~~~l~sgs~d---g~I~iWd~~~~ 357 (369)
..... +..++||+.|+..+.+ +.+++|++...
T Consensus 359 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 359 WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 32222 2457799988765554 88999998653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-15 Score=136.69 Aligned_cols=250 Identities=14% Similarity=0.019 Sum_probs=150.5
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecC----CcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSY----GHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~----g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
|......++|+||+ ..|++++.+ +.+.+|+++.....+.. ......+ ......+++ ++. .+++
T Consensus 48 ~~~~p~~l~~spdg----~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~-~~~~~~~-----~~~p~~~~~--dg~-~l~~ 114 (361)
T 3scy_A 48 EVANPSYLIPSADG----KFVYSVNEFSKDQAAVSAFAFDKEKGTLHL-LNTQKTM-----GADPCYLTT--NGK-NIVT 114 (361)
T ss_dssp ECSCCCSEEECTTS----SEEEEEECCSSTTCEEEEEEEETTTTEEEE-EEEEECS-----SSCEEEEEE--CSS-EEEE
T ss_pred cCCCCceEEECCCC----CEEEEEEccCCCCCcEEEEEEeCCCCcEEE-eeEeccC-----CCCcEEEEE--CCC-EEEE
Confidence 66777889999984 566666553 79999998754111110 0011100 112345777 344 4555
Q ss_pred EecccceEEEEeCCc--ceEEEE-eeeC----C-------cceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccC--
Q 017601 167 ARSFSKSIDVYDQDI--HLRTLR-TLWY----P-------SSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKEN-- 229 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~--~~~~~~-~~~~----~-------~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~-- 229 (369)
+...+++|.+|+... .+..+. ...+ + ..+..+. ++|++..++++. .++.|.+|++.....
T Consensus 115 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~spdg~~l~~~~~~~~~v~v~~~~~~~~~~ 191 (361)
T 3scy_A 115 ANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR---ITPDGKYLLADDLGTDQIHKFNINPNANAD 191 (361)
T ss_dssp EETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE---ECTTSSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred EECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE---ECCCCCEEEEEeCCCCEEEEEEEcCCCCcc
Confidence 536789999999742 111110 0000 0 0111122 345666666655 478999999875521
Q ss_pred ----Ccee---eeeeccCCCcEEEEEECCCC-cEEEEe-CCCcEEEEeCCCcee--eeec---cccccCceEEEEEcCCC
Q 017601 230 ----GGCL---HRICGSVGDILYAVCSSSTG-NIAVAG-ADRTVTIYDPRRWSA--LSRW---VHCSKYEITGLSFSSID 295 (369)
Q Consensus 230 ----~~~~---~~~~~~~~~~v~~v~~sp~g-~lasgs-~D~~v~vwD~~~~~~--~~~~---~~h~~~~v~~l~~sp~d 295 (369)
.... ..........+..++|+|+| ++++++ .++.|.+||+.+++. +..+ ..+ ......++|+| |
T Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~-~~~~~~i~~sp-d 269 (361)
T 3scy_A 192 NKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVN-AQGSGDIHLSP-D 269 (361)
T ss_dssp TCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSC-CCCEEEEEECT-T
T ss_pred cccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCC-CCCcccEEECC-C
Confidence 0000 12221113668899999999 676666 699999999987644 2222 333 45578999999 9
Q ss_pred CCEEEEEECC--CeEEEEECc--CCc--eeEEEEcCCCeeeeeEcCCCCEEEEEe-CCCcEEEEE--CCCCc
Q 017601 296 SNYIYVQGVD--YEVFCGQWR--ESS--KVFAFRGDSNWLGFSKCSNRDVLGGWS-DSGSIFVAD--VVAKE 358 (369)
Q Consensus 296 ~~~l~s~s~D--~~i~vwd~~--~~~--~~~~~~g~~~~~~~~~~~d~~~l~sgs-~dg~I~iWd--~~~~~ 358 (369)
+++|+++..+ ++|.+|++. +++ .+..+........+...+||++|+.++ .++.|.+|+ .++++
T Consensus 270 g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 270 GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 9998776654 899999996 344 334444311114566678999888877 679999964 44554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-15 Score=160.72 Aligned_cols=239 Identities=13% Similarity=0.059 Sum_probs=169.1
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+|.+.+.++.|+++ .++++.+.+|.+.+|.++..... ...+..+. .+...+|+|++ ..++.+
T Consensus 200 ~~~~~~v~~~~~s~d-----~l~~~~~~dg~~~l~~~~~~g~~----~~~l~~~~------~~~~~~~SpDG-~~la~~- 262 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-----RIYFITDIDGFGQIYSTDLDGKD----LRKHTSFT------DYYPRHLNTDG-RRILFS- 262 (1045)
T ss_dssp ECCSSCCEEEEEETT-----EEEEEECTTSSCEEEEEETTSCS----CEECCCCC------SSCEEEEEESS-SCEEEE-
T ss_pred cCCCCcccceEEeCC-----EEEEEEeccCceEEEEEeCCCCc----ceEecCCC------CcceeeEcCCC-CEEEEE-
Confidence 689999999999876 46667777788888877643211 11122111 23367999954 456665
Q ss_pred cccceEEEEeCCc-ceEEEEeee---------CCcceeeeccCCCC-CCCCcEEEEEcCCeEEEEeCCcccCCceeeeee
Q 017601 169 SFSKSIDVYDQDI-HLRTLRTLW---------YPSSLNFVQNLSPV-NGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC 237 (369)
Q Consensus 169 s~d~~i~lwd~~~-~~~~~~~~~---------~~~~v~~~~~~~~~-~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~ 237 (369)
.++.|.+||... .+..+.... +...+..+. ++ ||+..+++++ ++.+.+||+..+ ... .+.
T Consensus 263 -~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~---~S~pdG~~la~~~-~~~i~~~~~~~~---~~~-~~~ 333 (1045)
T 1k32_A 263 -KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAED---FSPLDGDLIAFVS-RGQAFIQDVSGT---YVL-KVP 333 (1045)
T ss_dssp -ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEE---EEECGGGCEEEEE-TTEEEEECTTSS---BEE-ECS
T ss_pred -eCCEEEEecCCceEeeeeccCcccccccccccccccceee---ecCCCCCEEEEEE-cCEEEEEcCCCC---ceE-Ecc
Confidence 488999999742 222211100 001122222 34 5566676666 889999999876 333 343
Q ss_pred ccCCC-cEEEEEECCCC-cEEEEeCCCcEE-EEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 238 GSVGD-ILYAVCSSSTG-NIAVAGADRTVT-IYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 238 ~~~~~-~v~~v~~sp~g-~lasgs~D~~v~-vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
.+ .. .+.+++|+ +| .|+.++.+..+. +||+.+++.. .+.+| ...+..++||| |+++|++++.|+.|++||+.
T Consensus 334 ~~-~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~-~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~ 408 (1045)
T 1k32_A 334 EP-LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN-LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLE 408 (1045)
T ss_dssp CC-SCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC-CCSEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred CC-CcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC-ccceeeeEECC-CCCEEEEECCCCeEEEEECC
Confidence 33 35 89999999 99 899988888888 9998876554 44477 88999999999 99999999999999999999
Q ss_pred CCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCC----------cEEEEECCCCc
Q 017601 315 ESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSG----------SIFVADVVAKE 358 (369)
Q Consensus 315 ~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg----------~I~iWd~~~~~ 358 (369)
+++....+.+|... ..+..++||++|++++.++ .|++||+.+++
T Consensus 409 tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 409 TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 99888888777632 3455688999998887654 99999998875
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=154.81 Aligned_cols=190 Identities=14% Similarity=0.000 Sum_probs=132.1
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCcc-eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc--
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH-LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM-- 226 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~-- 226 (369)
++.+++|+|+ . .++.+ .+++|.+||.... ...+ ..+...+..+. ++||+..|++ +.|+.|.+||+.+
T Consensus 83 ~v~~~~~spd-~-~~~~~--~~~~i~~~d~~~~~~~~l--~~~~~~~~~~~---~SpdG~~la~-~~~~~i~v~~~~~~~ 152 (706)
T 2z3z_A 83 PSFRTLDAGR-G-LVVLF--TQGGLVGFDMLARKVTYL--FDTNEETASLD---FSPVGDRVAY-VRNHNLYIARGGKLG 152 (706)
T ss_dssp CCEEEEETTT-T-EEEEE--ETTEEEEEETTTTEEEEE--ECCTTCCTTCE---ECTTSSEEEE-EETTEEEEEECBCTT
T ss_pred CceeEEECCC-C-eEEEE--ECCEEEEEECCCCceEEc--cCCcccccCCc---CCCCCCEEEE-EECCeEEEEecCccc
Confidence 4668999996 4 44444 3599999998643 2222 22222222222 3466666666 5789999999987
Q ss_pred ---ccCCceeeeeeccCCCc--------------EEEEEECCCC-cEEEEe-----------------------------
Q 017601 227 ---KENGGCLHRICGSVGDI--------------LYAVCSSSTG-NIAVAG----------------------------- 259 (369)
Q Consensus 227 ---~~~~~~~~~~~~~~~~~--------------v~~v~~sp~g-~lasgs----------------------------- 259 (369)
+ +........ ... +.+++||||| +|++++
T Consensus 153 ~~~g---~~~~~~~~~-~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~ 228 (706)
T 2z3z_A 153 EGMS---RAIAVTIDG-TETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMA 228 (706)
T ss_dssp SCCC---CCEESCSCC-BTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBT
T ss_pred ccCC---CcEEeccCC-CCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCC
Confidence 6 443322222 122 4789999999 888887
Q ss_pred ----CCCcEEEEeCCCceeeeecc--ccccCceEEEEEcCCCCCEEEEEECCC-----eEEEEECcCC-ceeEEEE-cCC
Q 017601 260 ----ADRTVTIYDPRRWSALSRWV--HCSKYEITGLSFSSIDSNYIYVQGVDY-----EVFCGQWRES-SKVFAFR-GDS 326 (369)
Q Consensus 260 ----~D~~v~vwD~~~~~~~~~~~--~h~~~~v~~l~~sp~d~~~l~s~s~D~-----~i~vwd~~~~-~~~~~~~-g~~ 326 (369)
.+..|.+||+.+++...... .| ...+.+++|+| |++.|++++.|+ .|++||+.++ .....+. .+.
T Consensus 229 g~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 229 GTPSHHVTVGIYHLATGKTVYLQTGEPK-EKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK 306 (706)
T ss_dssp TSCCCEEEEEEEETTTTEEEECCCCSCT-TCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred CCCCCeeEEEEEECCCCceEeeccCCCC-ceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC
Confidence 45789999999887654432 46 67899999999 999999988876 9999999998 4433332 222
Q ss_pred Cee----eeeEcC--CCCEEEEEeCCCcEEEEECC
Q 017601 327 NWL----GFSKCS--NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 327 ~~~----~~~~~~--d~~~l~sgs~dg~I~iWd~~ 355 (369)
.|. .+..++ ||++|++++.|+.+++|++.
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 222 345578 99999999999999999876
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=160.61 Aligned_cols=235 Identities=13% Similarity=-0.016 Sum_probs=165.8
Q ss_pred eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCC------CCCCCeeEEEEC-CCCceeEEE
Q 017601 94 EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCG------VGEGSWSGLCFS-PSQWSMAAV 166 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~-p~~~~~~a~ 166 (369)
.+...+|+||+ ..++.. .++.|++|++... .+. .+..+... .....+.+++|+ |+ +..+++
T Consensus 246 ~~~~~~~SpDG----~~la~~-~~~~i~~~d~~~~--~l~----~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~ 313 (1045)
T 1k32_A 246 DYYPRHLNTDG----RRILFS-KGGSIYIFNPDTE--KIE----KIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAF 313 (1045)
T ss_dssp SSCEEEEEESS----SCEEEE-ETTEEEEECTTTC--CEE----ECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEE
T ss_pred CcceeeEcCCC----CEEEEE-eCCEEEEecCCce--Eee----eeccCcccccccccccccccceeeecCCC-CCEEEE
Confidence 57788999985 445554 4789999998322 111 11110000 001135589999 95 456666
Q ss_pred EecccceEEEEeCCcc-eEEEEeeeCCc-ceeeeccCCCCCCCCcEEEEEcCCeEE-EEeCCcccCCceeeeeeccCCCc
Q 017601 167 ARSFSKSIDVYDQDIH-LRTLRTLWYPS-SLNFVQNLSPVNGGPNMLAVTEGCQLT-IWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~~~lla~s~d~~v~-iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
+ + ++.|.+|+.... ...+ ..+.. .+..+. ++ ++..++.++++..+. +||+.++ .. ..+..+ ...
T Consensus 314 ~-~-~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~---~s-dg~~l~~~s~~~~l~~~~d~~~~---~~-~~l~~~-~~~ 380 (1045)
T 1k32_A 314 V-S-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRG---GD-TKVAFIHGTREGDFLGIYDYRTG---KA-EKFEEN-LGN 380 (1045)
T ss_dssp E-E-TTEEEEECTTSSBEEEC--SCCSCEEEEEEC---SS-SEEEEEEEETTEEEEEEEETTTC---CE-EECCCC-CCS
T ss_pred E-E-cCEEEEEcCCCCceEEc--cCCCcceEEeee---Ec-CCCeEEEEECCCceEEEEECCCC---Cc-eEecCC-ccc
Confidence 6 3 789999997532 2222 22333 334444 34 567888888888888 9998876 33 333343 578
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCC----------eEEEEE
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY----------EVFCGQ 312 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~----------~i~vwd 312 (369)
+.+++|+||| +|++++.++.|++||+.+++....+.+| ...+.+++||| ||++|++++.++ .|++||
T Consensus 381 ~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~-~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred eeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC-CCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEE
Confidence 9999999999 9999999999999999999888777788 88999999999 999999887754 999999
Q ss_pred CcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 313 WRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 313 ~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
+.+++ ...+.+|... ..+..++||+.|+.++.++...+|+...
T Consensus 459 ~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 459 MEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp TTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred CCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 99876 5555555421 2344577999999999999888887654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-15 Score=134.65 Aligned_cols=207 Identities=12% Similarity=0.085 Sum_probs=136.8
Q ss_pred eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec----
Q 017601 94 EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS---- 169 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s---- 169 (369)
.+..++|+|++ ..++++...++.|++||+.++.. . ....... .. .......+++|+|++. .++++..
T Consensus 35 ~~~~~~~s~dg---~~l~v~~~~~~~v~~~d~~~~~~-~--~~~~~~~-~~-~~~~~~~~~~~s~dg~-~l~~~~~~~~~ 105 (337)
T 1pby_B 35 TPMVPMVAPGG---RIAYATVNKSESLVKIDLVTGET-L--GRIDLST-PE-ERVKSLFGAALSPDGK-TLAIYESPVRL 105 (337)
T ss_dssp CCCCEEECTTS---SEEEEEETTTTEEEEEETTTCCE-E--EEEECCB-TT-EEEECTTCEEECTTSS-EEEEEEEEEEE
T ss_pred CccceEEcCCC---CEEEEEeCCCCeEEEEECCCCCe-E--eeEEcCC-cc-cccccccceEECCCCC-EEEEEeccccc
Confidence 47889999984 34556666778999999875421 1 0111110 00 0000123699999654 4555411
Q ss_pred -------ccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC
Q 017601 170 -------FSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 170 -------~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
.++.|.+||... ..+.+.....+..+.+ +|++..++++ ++.|.+||+.++ +.+..+....
T Consensus 106 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------s~dg~~l~~~--~~~i~~~d~~~~---~~~~~~~~~~ 174 (337)
T 1pby_B 106 ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAW------ARDGSKLYGL--GRDLHVMDPEAG---TLVEDKPIQS 174 (337)
T ss_dssp CSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEE------CTTSSCEEEE--SSSEEEEETTTT---EEEEEECSTT
T ss_pred ccccccccCceEEEEECCCCcEEEEEeCCCCcceeEE------CCCCCEEEEe--CCeEEEEECCCC---cEeeeeeccc
Confidence 468999999863 3333332223334433 3456566665 678999998765 3322221110
Q ss_pred -----------------------------------------------------------------CCcEEEEEECCCC-c
Q 017601 241 -----------------------------------------------------------------GDILYAVCSSSTG-N 254 (369)
Q Consensus 241 -----------------------------------------------------------------~~~v~~v~~sp~g-~ 254 (369)
...+++++|+|+| +
T Consensus 175 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 254 (337)
T 1pby_B 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR 254 (337)
T ss_dssp TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCE
Confidence 1235679999999 7
Q ss_pred EEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC
Q 017601 255 IAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD 325 (369)
Q Consensus 255 lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~ 325 (369)
++++ ++.|.+||+.+++.+..+..+ ..+.+++|+| ++++|++++.|+.|++||+.+++.+..+..+
T Consensus 255 l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 255 AFGA--YNVLESFDLEKNASIKRVPLP--HSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEEe--CCeEEEEECCCCcCcceecCC--CceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 7777 799999999999888777644 4678999999 9999999999999999999999888888654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=152.59 Aligned_cols=236 Identities=11% Similarity=0.061 Sum_probs=146.5
Q ss_pred EEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec-------
Q 017601 97 SIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS------- 169 (369)
Q Consensus 97 ~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s------- 169 (369)
+++|+|++ .++++ +.+++|++||+.++.. ...+..+.. .+.++.+++|||++ ..++.+..
T Consensus 20 ~~~~s~dg----~~~~~-~~d~~i~~~~~~~g~~-----~~~~~~~~~--~~~~~~~~~~SpDg-~~la~~~~~~~~~~~ 86 (719)
T 1z68_A 20 FPNWISGQ----EYLHQ-SADNNIVLYNIETGQS-----YTILSNRTM--KSVNASNYGLSPDR-QFVYLESDYSKLWRY 86 (719)
T ss_dssp CCEESSSS----EEEEE-CTTSCEEEEESSSCCE-----EEEECHHHH--HTTTCSEEEECTTS-SEEEEEEEEEECSSS
T ss_pred ccEECCCC----eEEEE-cCCCCEEEEEcCCCcE-----EEEEccccc--cccceeeEEECCCC-CeEEEEecCceeEEe
Confidence 78999984 45554 4589999999986521 111111100 00123479999955 45666522
Q ss_pred -ccceEEEEeCCcceEE--EEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee-eccCCCcE-
Q 017601 170 -FSKSIDVYDQDIHLRT--LRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI-CGSVGDIL- 244 (369)
Q Consensus 170 -~d~~i~lwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~-~~~~~~~v- 244 (369)
.+++|.+||....... .... ..+.... ++||+..|+.+ .++.|++||+.++ +..+.. .++ ...|
T Consensus 87 s~~~~i~~~d~~~g~~~~~~~l~---~~~~~~~---~SPDG~~la~~-~~~~i~~~~~~~g---~~~~l~~~~~-~~~v~ 155 (719)
T 1z68_A 87 SYTATYYIYDLSNGEFVRGNELP---RPIQYLC---WSPVGSKLAYV-YQNNIYLKQRPGD---PPFQITFNGR-ENKIF 155 (719)
T ss_dssp CEEEEEEEEETTTTEECCSSCCC---SSBCCEE---ECSSTTCEEEE-ETTEEEEESSTTS---CCEECCCCCB-TTTEE
T ss_pred ecceEEEEEECCCCccccceecC---cccccce---ECCCCCEEEEE-ECCeEEEEeCCCC---CcEEEecCCC-cCCeE
Confidence 2689999998643210 1111 1122222 34677777766 4789999999887 433222 121 1222
Q ss_pred ----------------EEEEECCCC-cEEEEeCCC----------------------------------cEEEEeCCCce
Q 017601 245 ----------------YAVCSSSTG-NIAVAGADR----------------------------------TVTIYDPRRWS 273 (369)
Q Consensus 245 ----------------~~v~~sp~g-~lasgs~D~----------------------------------~v~vwD~~~~~ 273 (369)
.+++||||| .||+++.|. .|++||+.+++
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence 489999999 888887652 78899999876
Q ss_pred ee--------eeccccccCceEEEEEcCCCCCEEEEEECC----CeEEEEE----CcCCceeEEE----EcCCCeee---
Q 017601 274 AL--------SRWVHCSKYEITGLSFSSIDSNYIYVQGVD----YEVFCGQ----WRESSKVFAF----RGDSNWLG--- 330 (369)
Q Consensus 274 ~~--------~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D----~~i~vwd----~~~~~~~~~~----~g~~~~~~--- 330 (369)
.. ..+.+| ...+.+++||| |++++++.... ..|.+|| +.++++...+ .+|..|..
T Consensus 236 ~~~~~~~~~~~~~~~~-~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 313 (719)
T 1z68_A 236 YVGPQEVPVPAMIASS-DYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFF 313 (719)
T ss_dssp HHCCEECCCCHHHHTS-CEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSS
T ss_pred ccceeEccCCccCCCC-cceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEcccc
Confidence 53 234567 88899999999 88777764432 2488899 7776655444 46664432
Q ss_pred ---eeEcCCCCEEE--EEeCCC--cEEEEECCCCc
Q 017601 331 ---FSKCSNRDVLG--GWSDSG--SIFVADVVAKE 358 (369)
Q Consensus 331 ---~~~~~d~~~l~--sgs~dg--~I~iWd~~~~~ 358 (369)
...++||+.|+ +...+| .|++||+.+++
T Consensus 314 ~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 34467888554 344555 57777876654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=132.96 Aligned_cols=208 Identities=13% Similarity=0.107 Sum_probs=134.4
Q ss_pred eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccccccc-CCCCCCCCCCeeEEEECCCCceeEEEEecc--
Q 017601 94 EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVL-PQDCGVGEGSWSGLCFSPSQWSMAAVARSF-- 170 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~-- 170 (369)
.+..++|+|++ ..+.++...++.|++||+.++.. ...+. ++..........+++|+|++. .++++ +.
T Consensus 44 ~~~~~~~s~dg---~~~~v~~~~~~~i~~~d~~t~~~-----~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~-~~~~ 113 (349)
T 1jmx_B 44 GPGTAMMAPDN---RTAYVLNNHYGDIYGIDLDTCKN-----TFHANLSSVPGEVGRSMYSFAISPDGK-EVYAT-VNPT 113 (349)
T ss_dssp SSCEEEECTTS---SEEEEEETTTTEEEEEETTTTEE-----EEEEESCCSTTEEEECSSCEEECTTSS-EEEEE-EEEE
T ss_pred CCceeEECCCC---CEEEEEeCCCCcEEEEeCCCCcE-----EEEEEcccccccccccccceEECCCCC-EEEEE-cccc
Confidence 56789999984 34555666788999999875411 11111 110000001123699999654 55665 33
Q ss_pred ----------cceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 171 ----------SKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 171 ----------d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
++.|.+||... ..+.+.....+..+..+. +++++. +++++ +.|.+||++++ +.+..+..
T Consensus 114 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---~s~dg~-l~~~~--~~i~~~d~~~~---~~~~~~~~ 184 (349)
T 1jmx_B 114 QRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR---AADDGS-LYVAG--PDIYKMDVKTG---KYTVALPL 184 (349)
T ss_dssp EECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE---ECTTSC-EEEES--SSEEEECTTTC---CEEEEECS
T ss_pred cccccccccCCCeEEEEECCCccccceeeeccCCCccccee---ECCCCc-EEEcc--CcEEEEeCCCC---ceeccccc
Confidence 38999999753 122222333333333222 235565 55543 44999999877 44443321
Q ss_pred cC-------------------------------------------------------------------CCcEEEEEECC
Q 017601 239 SV-------------------------------------------------------------------GDILYAVCSSS 251 (369)
Q Consensus 239 ~~-------------------------------------------------------------------~~~v~~v~~sp 251 (369)
.. ...+.+++|+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 264 (349)
T 1jmx_B 185 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 264 (349)
T ss_dssp TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECS
T ss_pred cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecC
Confidence 10 01456778889
Q ss_pred -CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC
Q 017601 252 -TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD 325 (369)
Q Consensus 252 -~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~ 325 (369)
+| +++++ ++.|.+||+++++.+..+... ..+.+++|+| ++++|++++.++.|++||+++++.+..+...
T Consensus 265 ~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 265 KDPNQIYGV--LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SCTTEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCCCEEEEE--cCeEEEEECccCeEEEEEcCC--CCccceEECC-CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 99 77777 889999999999888777643 4578999999 9998888888999999999999888887544
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-14 Score=130.23 Aligned_cols=244 Identities=7% Similarity=-0.055 Sum_probs=148.2
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEec-CCCCCCccccccccCCCCCCCCCCeeEEEECCCCce-eEEEEec-
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLD-TSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS-MAAVARS- 169 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~-~~a~~~s- 169 (369)
..+..++|+|++ ..|++++.+ .+.+|++. ++ . +.. ....... +...+++|+|++.. +++++ .
T Consensus 40 ~~~~~~a~spdg----~~l~~~~~~-~v~~~~~~~~g-~-~~~-~~~~~~~------g~~~~~~~spdg~~l~~~~~-~~ 104 (365)
T 1jof_A 40 EPISWMTFDHER----KNIYGAAMK-KWSSFAVKSPT-E-IVH-EASHPIG------GHPRANDADTNTRAIFLLAA-KQ 104 (365)
T ss_dssp CCCSEEEECTTS----SEEEEEEBT-EEEEEEEEETT-E-EEE-EEEEECC------SSGGGGCTTSCCEEEEEEEC-SS
T ss_pred CCCcEEEECCCC----CEEEEEccc-eEEEEEECCCC-C-EEE-eeEeecC------CCCccEEECCCCCEEEEEEe-cC
Confidence 457789999984 566666666 89999986 33 1 100 0011000 11235899996654 34444 3
Q ss_pred ------------ccceEEEEeCC---cceEEEEeee--CCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCC-cccCC
Q 017601 170 ------------FSKSIDVYDQD---IHLRTLRTLW--YPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLR-MKENG 230 (369)
Q Consensus 170 ------------~d~~i~lwd~~---~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~-~~~~~ 230 (369)
.++++.+|++. .....+.... +...+..+. ++||+..++++. .+++|++||+. +++ .
T Consensus 105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~spdG~~l~~~~~~~~~v~~~~~~~~g~-~ 180 (365)
T 1jof_A 105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMV---FDPTETYLYSADLTANKLWTHRKLASGE-V 180 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEE---ECTTSSEEEEEETTTTEEEEEEECTTSC-E
T ss_pred CcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEE---ECCCCCEEEEEcCCCCEEEEEEECCCCC-E
Confidence 58899999874 2222333221 112222332 345666666554 36799999998 552 1
Q ss_pred ceeeeeecc-CCCcEEEEEECCCC-cEEEEeC-CCcEEEEeCC--Cceee------eecc----ccccC------ceEEE
Q 017601 231 GCLHRICGS-VGDILYAVCSSSTG-NIAVAGA-DRTVTIYDPR--RWSAL------SRWV----HCSKY------EITGL 289 (369)
Q Consensus 231 ~~~~~~~~~-~~~~v~~v~~sp~g-~lasgs~-D~~v~vwD~~--~~~~~------~~~~----~h~~~------~v~~l 289 (369)
..+..+... .+..+..++|+|+| ++++++. +++|.+|++. +++.. ..+. +| .. .+..+
T Consensus 181 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i 259 (365)
T 1jof_A 181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR-DPETGKGLYRADV 259 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB-CTTTSSBSEEEEE
T ss_pred EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCc-ccccccccccccE
Confidence 122334311 03668999999999 7777664 7899999765 45432 2222 22 22 58899
Q ss_pred E-EcCCCCCEEEEEECC-C-----eEEEEECc-CCceeE---EEEcCC-CeeeeeEcC---CCCEEEEEeCC-CcEEEEE
Q 017601 290 S-FSSIDSNYIYVQGVD-Y-----EVFCGQWR-ESSKVF---AFRGDS-NWLGFSKCS---NRDVLGGWSDS-GSIFVAD 353 (369)
Q Consensus 290 ~-~sp~d~~~l~s~s~D-~-----~i~vwd~~-~~~~~~---~~~g~~-~~~~~~~~~---d~~~l~sgs~d-g~I~iWd 353 (369)
+ |+| ||++|+++..+ . +|.+|++. +++... ....+. ....+...| ||++|++++.+ +.|.+|+
T Consensus 260 ~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 260 CALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred EEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence 9 999 99998876643 2 89999996 555443 132221 112344456 79999998875 9999999
Q ss_pred CCCC
Q 017601 354 VVAK 357 (369)
Q Consensus 354 ~~~~ 357 (369)
+...
T Consensus 339 ~~~~ 342 (365)
T 1jof_A 339 WKDE 342 (365)
T ss_dssp EETT
T ss_pred Echh
Confidence 8654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-12 Score=117.86 Aligned_cols=245 Identities=10% Similarity=0.088 Sum_probs=155.1
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
+|-....+|++++++ .+.++...++.|.+|+.+.. . ...+........ ......++++.+.+..++++..+
T Consensus 27 g~~~~p~~v~~~~~g----~l~v~~~~~~~i~~~d~~g~--~--~~~~~~~~~~~~-~~~~p~~i~~~~~~g~l~v~~~~ 97 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQN----DIIVADTNNHRIQIFDKEGR--F--KFQFGECGKRDS-QLLYPNRVAVVRNSGDIIVTERS 97 (286)
T ss_dssp TCBSCEEEEEECTTC----CEEEEEGGGTEEEEECTTSC--E--EEEECCBSSSTT-CBSSEEEEEEETTTTEEEEEECG
T ss_pred CccCCCceEEECCCC----CEEEEECCCCEEEEECCCCc--E--EEEecccCCCcc-cccCceEEEEEcCCCeEEEEcCC
Confidence 445678899998873 46666667789999986522 0 111111000000 01124579994335555555423
Q ss_pred ccceEEEEeCCcc-eEEEEee--eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc-CCCcEE
Q 017601 170 FSKSIDVYDQDIH-LRTLRTL--WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS-VGDILY 245 (369)
Q Consensus 170 ~d~~i~lwd~~~~-~~~~~~~--~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~-~~~~v~ 245 (369)
.++.|.+||.... +..+... ..+..+.+ ++++..+++...++.|.+||.. + +.+..+... ....++
T Consensus 98 ~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~------~~~g~l~v~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 98 PTHQIQIYNQYGQFVRKFGATILQHPRGVTV------DNKGRIIVVECKVMRVIIFDQN-G---NVLHKFGCSKHLEFPN 167 (286)
T ss_dssp GGCEEEEECTTSCEEEEECTTTCSCEEEEEE------CTTSCEEEEETTTTEEEEECTT-S---CEEEEEECTTTCSSEE
T ss_pred CCCEEEEECCCCcEEEEecCccCCCceEEEE------eCCCCEEEEECCCCEEEEEcCC-C---CEEEEeCCCCccCCcE
Confidence 3889999996432 2222111 12222322 3455555555568899999964 3 455555321 135689
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccc-cCceEEEEEcCCCCCEEEEEECCC-eEEEEECcCCceeEEE
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCS-KYEITGLSFSSIDSNYIYVQGVDY-EVFCGQWRESSKVFAF 322 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~-~~~v~~l~~sp~d~~~l~s~s~D~-~i~vwd~~~~~~~~~~ 322 (369)
+++++|+| ++++...++.|++||. +++.+..+..+- ...+.+++++| +++++++...++ .|.+||. .++.+..+
T Consensus 168 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~-~g~~~~~~ 244 (286)
T 1q7f_A 168 GVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLISAL 244 (286)
T ss_dssp EEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECC-CCCEEEEE
Confidence 99999999 7777778999999997 455555554320 35789999999 999999888886 9999995 45666666
Q ss_pred EcCCC---eeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 323 RGDSN---WLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 323 ~g~~~---~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
..+.. ..++...++|.++++ +.|+.|++|+....
T Consensus 245 ~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 245 ESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred cccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 55431 234555678887777 67999999998653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-14 Score=129.75 Aligned_cols=219 Identities=11% Similarity=-0.005 Sum_probs=134.1
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEe-cCCcEEEEEecCCCCCCccccccccCCC--CCCCCCCeeEEEECCCCceeEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVD-SYGHLIVSKLDTSGKDVDRLTYSVLPQD--CGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d-~~g~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..|...+..++|+|++ ..|++.+ .++.+.+|++.................. .........+++|+|++. +++
T Consensus 82 ~~~~~~p~~~a~spdg----~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v 156 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEAR----QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAV 156 (347)
T ss_dssp EEESCCCSEEEEETTT----TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEE
T ss_pred ecCCCCCEEEEECCCC----CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEE
Confidence 3466788999999984 4555555 6789999999643110000001000000 000111245799999766 655
Q ss_pred EEecccceEEEEeCC--cceEEEEeee-CC-cceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCc--ccCCceeeeeec
Q 017601 166 VARSFSKSIDVYDQD--IHLRTLRTLW-YP-SSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRM--KENGGCLHRICG 238 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~--~~~~~~~~~~-~~-~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~--~~~~~~~~~~~~ 238 (369)
+. ..++.|.+||.. .......... .. .....+. ++||+..+++++ .++.+.+||+.. ++ ...+..+..
T Consensus 157 ~~-~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~---~spdg~~l~v~~~~~~~v~v~~~~~~~g~-~~~~~~~~~ 231 (347)
T 3hfq_A 157 ID-LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV---FSPDGQYAFLAGELSSQIASLKYDTQTGA-FTQLGIVKT 231 (347)
T ss_dssp EE-TTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE---ECTTSSEEEEEETTTTEEEEEEEETTTTE-EEEEEEEES
T ss_pred Ee-CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE---ECCCCCEEEEEeCCCCEEEEEEecCCCCc-eEEeeeeee
Confidence 55 778899999976 2222221111 11 1122222 345666566544 578999999874 31 112223322
Q ss_pred cC-----CCcEEEEEECCCC-cE-EEEeCCCcEEEEeCCC---ceeeeeccccccCceEEEEEcCCCCCEEEEEECC-Ce
Q 017601 239 SV-----GDILYAVCSSSTG-NI-AVAGADRTVTIYDPRR---WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD-YE 307 (369)
Q Consensus 239 ~~-----~~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~~---~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D-~~ 307 (369)
.. ...+..++|+|+| +| ++...++.|.+||+.. .+.+..+..+ ...+..++|+| |+++|++++.+ +.
T Consensus 232 ~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~sp-dg~~l~v~~~~~~~ 309 (347)
T 3hfq_A 232 IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-GDFPRDFDLDP-TEAFVVVVNQNTDN 309 (347)
T ss_dssp SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-SSCCCEEEECT-TSSEEEEEETTTTE
T ss_pred cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-CCCcCeEEECC-CCCEEEEEEcCCCc
Confidence 10 1458899999999 55 5666799999999973 3556666666 66789999999 99998888765 89
Q ss_pred EEEEEC--cCCcee
Q 017601 308 VFCGQW--RESSKV 319 (369)
Q Consensus 308 i~vwd~--~~~~~~ 319 (369)
|.+|++ .++++.
T Consensus 310 v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 310 ATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEECTTTCCEE
T ss_pred EEEEEEeCCCCeEE
Confidence 999955 455544
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-14 Score=142.85 Aligned_cols=242 Identities=13% Similarity=0.050 Sum_probs=150.8
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
.....+++|+||+ .++++. +|+|++|++.++.. ...+..+..........+++|||++ ..++.+ +.+
T Consensus 16 ~~~~~~~~w~~dg----~~~~~~--~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~-~~~ 82 (740)
T 4a5s_A 16 RLKLYSLRWISDH----EYLYKQ--ENNILVFNAEYGNS-----SVFLENSTFDEFGHSINDYSISPDG-QFILLE-YNY 82 (740)
T ss_dssp CCCCCCEEECSSS----EEEEEE--TTEEEEEETTTCCE-----EEEECTTTTTTCCSCCCEEEECTTS-SEEEEE-EEE
T ss_pred cccccccEECCCC----cEEEEc--CCcEEEEECCCCce-----EEEEechhhhhhcccccceEECCCC-CEEEEE-ECC
Confidence 3456789999984 677775 78999999986631 1112222211111112258899965 456665 444
Q ss_pred ---------ceEEEEeCCcce-EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee-eeccC
Q 017601 172 ---------KSIDVYDQDIHL-RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR-ICGSV 240 (369)
Q Consensus 172 ---------~~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~-~~~~~ 240 (369)
+.+.+||..... ..+ ..++..+.... ++|||..|+.+ .|+.|.+||+.++ ...+. ..++
T Consensus 83 ~~~~r~~~~~~~~~~d~~~~~~~~l--~~~~~~~~~~~---~SPdG~~la~~-~~~~i~~~~~~~~---~~~~lt~~g~- 152 (740)
T 4a5s_A 83 VKQWRHSYTASYDIYDLNKRQLITE--ERIPNNTQWVT---WSPVGHKLAYV-WNNDIYVKIEPNL---PSYRITWTGK- 152 (740)
T ss_dssp EECSSSCEEEEEEEEETTTTEECCS--SCCCTTEEEEE---ECSSTTCEEEE-ETTEEEEESSTTS---CCEECCSCCB-
T ss_pred eeeEEEccceEEEEEECCCCcEEEc--ccCCCcceeeE---ECCCCCEEEEE-ECCeEEEEECCCC---ceEEEcCCCC-
Confidence 556799986432 222 22333444444 45677777766 5789999999877 33221 1121
Q ss_pred CCcE-----------------EEEEECCCC-cEEEEeCCC------------------------------------cEEE
Q 017601 241 GDIL-----------------YAVCSSSTG-NIAVAGADR------------------------------------TVTI 266 (369)
Q Consensus 241 ~~~v-----------------~~v~~sp~g-~lasgs~D~------------------------------------~v~v 266 (369)
...+ .++.||||| .||.++.|. +|++
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 1222 248999999 888875432 4788
Q ss_pred EeCCC---ce--eeeecc------ccccCceEEEEEcCCCCCEEEEEEC----CCeEEEEECcCCc----ee--EEE--E
Q 017601 267 YDPRR---WS--ALSRWV------HCSKYEITGLSFSSIDSNYIYVQGV----DYEVFCGQWRESS----KV--FAF--R 323 (369)
Q Consensus 267 wD~~~---~~--~~~~~~------~h~~~~v~~l~~sp~d~~~l~s~s~----D~~i~vwd~~~~~----~~--~~~--~ 323 (369)
||+.+ ++ ....+. +| ...+..++||| |++.++.... +..|++||+.+++ +. ..+ .
T Consensus 233 ~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~ 310 (740)
T 4a5s_A 233 VNTDSLSSVTNATSIQITAPASMLIG-DHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM 310 (740)
T ss_dssp EETTSCCSSSCCCEEEECCCHHHHTS-CEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE
T ss_pred EECCCCCCCCcceEEEecCCccCCCC-CeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec
Confidence 99988 63 222332 37 77899999999 9997665532 3479999999876 22 222 5
Q ss_pred cCCCeee------eeEcCCCCEEE-EEeCC---CcEEEEECCCCc
Q 017601 324 GDSNWLG------FSKCSNRDVLG-GWSDS---GSIFVADVVAKE 358 (369)
Q Consensus 324 g~~~~~~------~~~~~d~~~l~-sgs~d---g~I~iWd~~~~~ 358 (369)
+|..|.. ...++||+.|+ ..+++ ..|++||+.+++
T Consensus 311 ~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 311 STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 5665543 34467999877 66654 478889987664
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-13 Score=139.53 Aligned_cols=251 Identities=11% Similarity=0.001 Sum_probs=155.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEE--ecCCcEEEEEecCCCCCCccccccccCCCCCC----CCCCeeEEEEC--CC
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSV--DSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGV----GEGSWSGLCFS--PS 159 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~--d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~--p~ 159 (369)
+.+|...|..++|+++ ....++. +.+++..+|....+.. ...+..+...+ .+-+-...+|+ |+
T Consensus 19 ~~~~~~~~~~~~~s~~----~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD 89 (662)
T 3azo_A 19 VASRSGRPACVGAVGD----EVWWVAPRPAEAGRATLVRRRADGA-----EESALPAPWNVRNRVFEYSGFPWAGVPRPA 89 (662)
T ss_dssp HHHTCSCCEEEEEETT----EEEEEEEETTTTTEEEEEEECTTSC-----EEESSCTTCCBCCCGGGTCCCCEEEECCSS
T ss_pred HhhcCCccceeEEcCC----eEEEEecCcccCCcEEEEEECCCCC-----cceeCCCCccccccccccCCccceeeeecC
Confidence 3468899999999976 4566666 5567788887643211 12222221110 01111124444 86
Q ss_pred CceeEEEEecccceEEEEeCC----cceEEEEeee---CCcceeeeccCCCCCCCCcEEEEEcC----------CeEEEE
Q 017601 160 QWSMAAVARSFSKSIDVYDQD----IHLRTLRTLW---YPSSLNFVQNLSPVNGGPNMLAVTEG----------CQLTIW 222 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~----~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~lla~s~d----------~~v~iw 222 (369)
+..+++.+...+..|.+++.+ ...+.+.... +...+.... ++||+..|++++.+ .+|.+|
T Consensus 90 g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~---~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 90 GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPV---LLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEE---EETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcE---ECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 554155553446677777765 4444443211 122222222 34678888888876 589999
Q ss_pred eCCc------ccCCceeeeee-ccCCCcEEEEEECCCC-cEEEEeCCC--------cEEEEeCC-Cc---eeeeeccccc
Q 017601 223 DLRM------KENGGCLHRIC-GSVGDILYAVCSSSTG-NIAVAGADR--------TVTIYDPR-RW---SALSRWVHCS 282 (369)
Q Consensus 223 D~~~------~~~~~~~~~~~-~~~~~~v~~v~~sp~g-~lasgs~D~--------~v~vwD~~-~~---~~~~~~~~h~ 282 (369)
|+.+ + ... .+. .+ ...+..++||||| +|+.++.++ .|.+||+. ++ +......+|
T Consensus 167 ~~~~~~~~~~~---~~~-~l~~~~-~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~- 240 (662)
T 3azo_A 167 PLDGSAAADRS---AVR-ELSDDA-HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP- 240 (662)
T ss_dssp ETTSTTTTCGG---GSE-ESSCSC-SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET-
T ss_pred ECCCCccccCC---cee-EEEecC-CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC-
Confidence 9987 4 332 333 22 3678889999999 888777553 79999998 56 444444455
Q ss_pred cCceEEEEEcCCCCCEEEEEECCC--eEEEEECcCCceeEEEEcCCCe---------eeeeEcCCCCEEEEEeCCCcEEE
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDY--EVFCGQWRESSKVFAFRGDSNW---------LGFSKCSNRDVLGGWSDSGSIFV 351 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~--~i~vwd~~~~~~~~~~~g~~~~---------~~~~~~~d~~~l~sgs~dg~I~i 351 (369)
...+..+.|+| ||+++++++.|+ .|.+||+.+++......++... ..+...+++.++++++. +.+++
T Consensus 241 ~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 241 EEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp TBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred CceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 68899999999 999888888888 6666676666554443333211 12233468899999999 99999
Q ss_pred E--ECCCCc
Q 017601 352 A--DVVAKE 358 (369)
Q Consensus 352 W--d~~~~~ 358 (369)
| |+.+++
T Consensus 319 ~~~d~~~~~ 327 (662)
T 3azo_A 319 GILDPESGE 327 (662)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCc
Confidence 9 555443
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-13 Score=127.92 Aligned_cols=248 Identities=8% Similarity=-0.016 Sum_probs=142.4
Q ss_pred cCCccceeeE-----EEEeecCCCCceEEEEEec-CC--cEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC
Q 017601 88 RCPHRSEVQS-----IALAETDSSGYMVLGSVDS-YG--HLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS 159 (369)
Q Consensus 88 ~~~H~~~V~~-----l~~s~~~~~~~~~las~d~-~g--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 159 (369)
+..|.+.... .+|+||+ ..|+.... +| +||+||+.++. ...+.... .....+++|+|+
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg----~~l~~~~~~~g~~~l~~~d~~~g~------~~~lt~~~----~~~~~~~~~spd 91 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDG----SKLLFGGAFDGPWNYYLLDLNTQV------ATQLTEGR----GDNTFGGFLSPD 91 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTS----CEEEEEECTTSSCEEEEEETTTCE------EEECCCSS----CBCSSSCEECTT
T ss_pred ecCCcccccchhhcCccCCCCC----CEEEEEEcCCCCceEEEEeCCCCc------eEEeeeCC----CCCccceEEcCC
Confidence 3455555555 8899985 44444433 66 48888876541 11111110 011124789995
Q ss_pred CceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE----------------------cCC
Q 017601 160 QWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT----------------------EGC 217 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s----------------------~d~ 217 (369)
+ ..|+.+ +.++.|.+||............+........+ ..++++..++... .+.
T Consensus 92 g-~~l~~~-~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~-~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 92 D-DALFYV-KDGRNLMRVDLATLEENVVYQVPAEWVGYGTW-VANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp S-SEEEEE-ETTTEEEEEETTTCCEEEEEECCTTEEEEEEE-EECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred C-CEEEEE-eCCCeEEEEECCCCcceeeeechhhcccccce-eECCCCCeeccccccCcccccccccchhhhhhccCCcc
Confidence 5 456666 67789999998643221111111111111111 0125555554321 246
Q ss_pred eEEEEeCCcccCCceeeeeeccCCCcEEEEEECC-CC-cEEEEeCC------CcEEEEeCCCceeeeecccccc-CceEE
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSS-TG-NIAVAGAD------RTVTIYDPRRWSALSRWVHCSK-YEITG 288 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g-~lasgs~D------~~v~vwD~~~~~~~~~~~~h~~-~~v~~ 288 (369)
.|.+||+.++ +......+. ..+..++|+| +| .|+..+.+ ..|.++|+..++ ...+..+.. ..+..
T Consensus 169 ~l~~~d~~~g---~~~~l~~~~--~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 169 RLMRVDLKTG---ESTVILQEN--QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTH 242 (388)
T ss_dssp EEEEEETTTC---CEEEEEEES--SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEE
T ss_pred eEEEEECCCC---ceEEeecCC--ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCccccc
Confidence 8999999987 443333343 6789999999 99 77776653 377888876544 344444412 35888
Q ss_pred EEEcCCCCCEEEEEECC-C----eEEEEECcCCcee--EEEEcCCCe----eeeeEcCCCCEEEEE---------eCCCc
Q 017601 289 LSFSSIDSNYIYVQGVD-Y----EVFCGQWRESSKV--FAFRGDSNW----LGFSKCSNRDVLGGW---------SDSGS 348 (369)
Q Consensus 289 l~~sp~d~~~l~s~s~D-~----~i~vwd~~~~~~~--~~~~g~~~~----~~~~~~~d~~~l~sg---------s~dg~ 348 (369)
+.||| ||+.|+..+.+ + .|++||+.+++.. ..+.++... .+...++||+.|+.. ..+..
T Consensus 243 ~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 321 (388)
T 3pe7_A 243 EFWVP-DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPF 321 (388)
T ss_dssp EEECT-TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCE
T ss_pred ceECC-CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence 99999 99977665442 2 3999999987643 333331100 112335677776643 55679
Q ss_pred EEEEECCCCcc
Q 017601 349 IFVADVVAKEN 359 (369)
Q Consensus 349 I~iWd~~~~~~ 359 (369)
|++||+.+++.
T Consensus 322 i~~~d~~~~~~ 332 (388)
T 3pe7_A 322 LYVFNMKNGTQ 332 (388)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEeccCCce
Confidence 99999988753
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-13 Score=121.83 Aligned_cols=237 Identities=8% Similarity=0.028 Sum_probs=156.2
Q ss_pred ceeeEEEEeecCCCCceEEEEEecC------------------------CcEEEEEecCCCCCCccccccccCCCCCCCC
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSY------------------------GHLIVSKLDTSGKDVDRLTYSVLPQDCGVGE 148 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~------------------------g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (369)
+.+.+|+++|++ .++++...+ ++|++||..++.. . .... ..+ -
T Consensus 24 ~~v~~va~d~~G----~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~--~-~~~~-~~~-----~ 90 (329)
T 3fvz_A 24 GQVSGVALDSKN----NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI--L-QSSG-KNL-----F 90 (329)
T ss_dssp SCEEEEEECTTC----CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE--E-EEEC-TTT-----C
T ss_pred CCceEEEECCCC----CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE--E-eccC-CCc-----c
Confidence 779999999974 455554444 4688888764411 0 0010 000 0
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcc---eEEEEe----------eeCCcceeeeccCCCCC-CCCcEEEEE
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH---LRTLRT----------LWYPSSLNFVQNLSPVN-GGPNMLAVT 214 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~---~~~~~~----------~~~~~~v~~~~~~~~~~-~~~~lla~s 214 (369)
..-.+++++|++. ++++. ..++.|.+||.+.. +..+.. ...|..+.+ ++ ++..+++.+
T Consensus 91 ~~p~gia~d~~g~-l~v~d-~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~------~~~~g~lyv~d~ 162 (329)
T 3fvz_A 91 YLPHGLSIDTDGN-YWVTD-VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV------EPSTGAVFVSDG 162 (329)
T ss_dssp SSEEEEEECTTSC-EEEEE-TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE------CTTTCCEEEEEC
T ss_pred CCceEEEECCCCC-EEEEE-CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE------eCCCCeEEEEeC
Confidence 1234899999554 66665 77899999997533 333311 012223333 34 344555555
Q ss_pred -cCCeEEEEeCCcccCCceeeeeeccC---------CCcEEEEEECCC-C-cEEEEeCCCcEEEEeCCCceeeeecc--c
Q 017601 215 -EGCQLTIWDLRMKENGGCLHRICGSV---------GDILYAVCSSST-G-NIAVAGADRTVTIYDPRRWSALSRWV--H 280 (369)
Q Consensus 215 -~d~~v~iwD~~~~~~~~~~~~~~~~~---------~~~v~~v~~sp~-g-~lasgs~D~~v~vwD~~~~~~~~~~~--~ 280 (369)
.++.|++||. .+ ..+..+.... ......++|+|+ + ++++...++.|++||..+++.+.++. .
T Consensus 163 ~~~~~I~~~~~-~g---~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 163 YCNSRIVQFSP-SG---KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp SSCCEEEEECT-TS---CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred CCCCeEEEEcC-CC---CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 5899999994 44 5555553220 123889999999 6 77777889999999999888888774 4
Q ss_pred cccCceEEEEEcCCCCCEEEEEEC-------CCeEEEEECcCCceeEEEE---cCCC-eeeeeEcCCCCEEEEEeCCCcE
Q 017601 281 CSKYEITGLSFSSIDSNYIYVQGV-------DYEVFCGQWRESSKVFAFR---GDSN-WLGFSKCSNRDVLGGWSDSGSI 349 (369)
Q Consensus 281 h~~~~v~~l~~sp~d~~~l~s~s~-------D~~i~vwd~~~~~~~~~~~---g~~~-~~~~~~~~d~~~l~sgs~dg~I 349 (369)
+ ...+.+++|+| +..+++.+. +.+|++||..+++.+..+. ++.. ..++...++|.++++...++.|
T Consensus 239 ~-~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 239 F-GRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp T-TTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCE
T ss_pred c-CCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEE
Confidence 5 56788999998 444444433 3489999999999988884 3321 2455556789889999999999
Q ss_pred EEEECCCC
Q 017601 350 FVADVVAK 357 (369)
Q Consensus 350 ~iWd~~~~ 357 (369)
++|++...
T Consensus 316 ~~~~~~~~ 323 (329)
T 3fvz_A 316 WKFTLTEK 323 (329)
T ss_dssp EEEEEEEC
T ss_pred EEEeCCcc
Confidence 99998653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=145.55 Aligned_cols=237 Identities=12% Similarity=0.004 Sum_probs=144.1
Q ss_pred eeeEEEEeecCCCCceEEEEEec---------CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 94 EVQSIALAETDSSGYMVLGSVDS---------YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~---------~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
.|.+++||||+ ..|+.++. ++.+++||+.++.. +. ...+. ..+..++|||++ ..|
T Consensus 61 ~~~~~~~SpDg----~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~-~~--~~~l~--------~~~~~~~~SPDG-~~l 124 (719)
T 1z68_A 61 NASNYGLSPDR----QFVYLESDYSKLWRYSYTATYYIYDLSNGEF-VR--GNELP--------RPIQYLCWSPVG-SKL 124 (719)
T ss_dssp TCSEEEECTTS----SEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CC--SSCCC--------SSBCCEEECSST-TCE
T ss_pred ceeeEEECCCC----CeEEEEecCceeEEeecceEEEEEECCCCcc-cc--ceecC--------cccccceECCCC-CEE
Confidence 38999999985 45555543 68999999875511 00 01111 124469999965 456
Q ss_pred EEEecccceEEEEeCCc-ceEEEEeeeCCccee--------------eeccCCCCCCCCcEEEEEcCC------------
Q 017601 165 AVARSFSKSIDVYDQDI-HLRTLRTLWYPSSLN--------------FVQNLSPVNGGPNMLAVTEGC------------ 217 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~--------------~~~~~~~~~~~~~lla~s~d~------------ 217 (369)
|.+ .++.|++||... ....+....+...+. ......++||+..|++++.|.
T Consensus 125 a~~--~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~ 202 (719)
T 1z68_A 125 AYV--YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYG 202 (719)
T ss_dssp EEE--ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECC
T ss_pred EEE--ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccC
Confidence 666 378999999742 222221111111000 001122456788888877542
Q ss_pred ----------------------eEEEEeCCcccCCcee---e-----eeeccCCCcEEEEEECCCC-cEEEEeCC----C
Q 017601 218 ----------------------QLTIWDLRMKENGGCL---H-----RICGSVGDILYAVCSSSTG-NIAVAGAD----R 262 (369)
Q Consensus 218 ----------------------~v~iwD~~~~~~~~~~---~-----~~~~~~~~~v~~v~~sp~g-~lasgs~D----~ 262 (369)
+|++||+.++ +.. . .+..+ ...+.+++||||+ ++++.... .
T Consensus 203 ~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~SpD~~~~~~~~~~~~~~~ 278 (719)
T 1z68_A 203 DEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP---AYVGPQEVPVPAMIASS-DYYFSWLTWVTDERVCLQWLKRVQNVS 278 (719)
T ss_dssp SSSSCEEEEEECCBTTSCCCEEEEEEEESSCH---HHHCCEECCCCHHHHTS-CEEEEEEEESSSSEEEEEEEESSTTEE
T ss_pred CCCCccceeecCCCCCCCCCeeEEEEEECCCC---CccceeEccCCccCCCC-cceEEEeEEeCCCeEEEEEeccccCeE
Confidence 7889999877 332 1 12223 4678999999999 66664432 2
Q ss_pred cEEEEe----CCCceeeeec----cccccCceE-----EEEEcCCCCCEEEE--EECCC--eEEEEECcCCceeEEEEcC
Q 017601 263 TVTIYD----PRRWSALSRW----VHCSKYEIT-----GLSFSSIDSNYIYV--QGVDY--EVFCGQWRESSKVFAFRGD 325 (369)
Q Consensus 263 ~v~vwD----~~~~~~~~~~----~~h~~~~v~-----~l~~sp~d~~~l~s--~s~D~--~i~vwd~~~~~~~~~~~g~ 325 (369)
.|.+|| +.+++....+ .+| ...+. .+.|+| ||+.|+. ...++ .|.+||+.+++. ..+..+
T Consensus 279 ~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~ 355 (719)
T 1z68_A 279 VLSICDFREDWQTWDCPKTQEHIEESR-TGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG 355 (719)
T ss_dssp EEEEEEECSSSSSEECCGGGEEEEECS-SSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS
T ss_pred EEEEEcccCCCCCCceEEEEecccccC-CceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCCce-EecccC
Confidence 488899 8888777666 466 66676 889999 9986554 44555 577778776653 344333
Q ss_pred C-CeeeeeEcCCCCEEEEEeC-----CCcEEEEECCC
Q 017601 326 S-NWLGFSKCSNRDVLGGWSD-----SGSIFVADVVA 356 (369)
Q Consensus 326 ~-~~~~~~~~~d~~~l~sgs~-----dg~I~iWd~~~ 356 (369)
. ....+... +++.|+..+. ++.+++|.+..
T Consensus 356 ~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 356 KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 2 11223334 6666655554 48889998754
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-12 Score=120.34 Aligned_cols=223 Identities=12% Similarity=0.064 Sum_probs=131.9
Q ss_pred cCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc----cceEEEEeCCc---ceEEEEe
Q 017601 116 SYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF----SKSIDVYDQDI---HLRTLRT 188 (369)
Q Consensus 116 ~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~----d~~i~lwd~~~---~~~~~~~ 188 (369)
.++.|++|.++.....+.... .. +. .....++|+|++. .++++ +. ++.|.+|+++. ..+.+..
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~-~~--~~-----~~p~~l~~spdg~-~l~~~-~~~~~~~~~v~~~~~~~~~g~~~~~~~ 94 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLS-DA--EV-----ANPSYLIPSADGK-FVYSV-NEFSKDQAAVSAFAFDKEKGTLHLLNT 94 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEE-EE--EC-----SCCCSEEECTTSS-EEEEE-ECCSSTTCEEEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEeCCCCCEEEee-cc--cC-----CCCceEEECCCCC-EEEEE-EccCCCCCcEEEEEEeCCCCcEEEeeE
Confidence 356788888865422211110 11 11 1122599999654 55555 34 37999997642 2333322
Q ss_pred ee-CCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCcee-eeeeccC---------CCcEEEEEECCCC-cE
Q 017601 189 LW-YPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCL-HRICGSV---------GDILYAVCSSSTG-NI 255 (369)
Q Consensus 189 ~~-~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~-~~~~~~~---------~~~v~~v~~sp~g-~l 255 (369)
.. .......+.. ++..+++++ .+++|.+||+........+ ..+.... ...+.+++|+|+| +|
T Consensus 95 ~~~~~~~p~~~~~-----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 95 QKTMGADPCYLTT-----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EECSSSCEEEEEE-----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eccCCCCcEEEEE-----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 22 2222233331 355666655 5889999999754211111 1111110 1346889999999 56
Q ss_pred EEE-eCCCcEEEEeCCCcee------e------ee-ccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCce--
Q 017601 256 AVA-GADRTVTIYDPRRWSA------L------SR-WVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESSK-- 318 (369)
Q Consensus 256 asg-s~D~~v~vwD~~~~~~------~------~~-~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~~-- 318 (369)
+++ ..++.|.+|++..... + .. ...+ ......++|+| |++++++++ .+++|.+||+.+++.
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP-GSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDE 247 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT-TCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC-CCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEE
Confidence 554 4589999998875331 1 11 1223 45678999999 999887777 689999999987654
Q ss_pred eEEEEcCC----CeeeeeEcCCCCEEEEEeCC--CcEEEEECC
Q 017601 319 VFAFRGDS----NWLGFSKCSNRDVLGGWSDS--GSIFVADVV 355 (369)
Q Consensus 319 ~~~~~g~~----~~~~~~~~~d~~~l~sgs~d--g~I~iWd~~ 355 (369)
+..+.... ....+...+||++|+.+..+ +.|.+|++.
T Consensus 248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 23332221 11245567899988766654 899999985
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=6.8e-12 Score=117.03 Aligned_cols=196 Identities=7% Similarity=-0.085 Sum_probs=124.2
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCC-c-ceEEEEeeeCCcceeeeccCCCCCCCCc-EEEEE--------------
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQD-I-HLRTLRTLWYPSSLNFVQNLSPVNGGPN-MLAVT-------------- 214 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~-lla~s-------------- 214 (369)
..++|+|++. +++++ +.+ .|.+||.. . ....+........ .....++|++.. ++.++
T Consensus 43 ~~~a~spdg~-~l~~~-~~~-~v~~~~~~~~g~~~~~~~~~~~g~---~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 43 SWMTFDHERK-NIYGA-AMK-KWSSFAVKSPTEIVHEASHPIGGH---PRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp SEEEECTTSS-EEEEE-EBT-EEEEEEEEETTEEEEEEEEECCSS---GGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred cEEEECCCCC-EEEEE-ccc-eEEEEEECCCCCEEEeeEeecCCC---CccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 3699999654 55555 555 99999864 2 2211111111011 112345576664 33332
Q ss_pred cCCeEEEEeCCc-ccCCceeeeee---ccCCCcEEEEEECCCC-cEEEEe-CCCcEEEEeCC-Cceee--eecc--cccc
Q 017601 215 EGCQLTIWDLRM-KENGGCLHRIC---GSVGDILYAVCSSSTG-NIAVAG-ADRTVTIYDPR-RWSAL--SRWV--HCSK 283 (369)
Q Consensus 215 ~d~~v~iwD~~~-~~~~~~~~~~~---~~~~~~v~~v~~sp~g-~lasgs-~D~~v~vwD~~-~~~~~--~~~~--~h~~ 283 (369)
.++++.+|++.. + +....+. ......+.+++|+|+| +|+++. .++.|++||+. +++.. ..+. .| .
T Consensus 117 ~~g~v~v~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~-g 192 (365)
T 1jof_A 117 FAGYGNVFSVSETG---KLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP-G 192 (365)
T ss_dssp SCCEEEEEEECTTC---CEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST-T
T ss_pred CCceEEEEccCCCC---cCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC-C
Confidence 588999999974 4 3333322 1113679999999999 777665 47899999998 66542 3333 24 5
Q ss_pred CceEEEEEcCCCCCEEEEEEC-CCeEEEEECc--CCceeE---EEE-------cCC-------Ceeeee-EcCCCCEEEE
Q 017601 284 YEITGLSFSSIDSNYIYVQGV-DYEVFCGQWR--ESSKVF---AFR-------GDS-------NWLGFS-KCSNRDVLGG 342 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~~--~~~~~~---~~~-------g~~-------~~~~~~-~~~d~~~l~s 342 (369)
..+..++|+| |+++|++++. +++|.+|++. +++... .+. +|. ....+. .++||++|++
T Consensus 193 ~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 193 DHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 6689999999 9999888775 7899999876 455422 222 222 124566 6789998887
Q ss_pred EeCCC------cEEEEECC-CCc
Q 017601 343 WSDSG------SIFVADVV-AKE 358 (369)
Q Consensus 343 gs~dg------~I~iWd~~-~~~ 358 (369)
++.+. .|.+|++. +++
T Consensus 272 ~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 272 SSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTTSC
T ss_pred ECCCCCCCCCCeEEEEEECCCCC
Confidence 66533 89999986 444
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.3e-13 Score=124.88 Aligned_cols=245 Identities=8% Similarity=-0.055 Sum_probs=145.4
Q ss_pred ccceeeEEEEeecCCCCceEEEEEec--CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDS--YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~--~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
|...+..++|+||+ ..++.+.+. ...+++|++..+. ...+..... .....++|+|++ ..|+..
T Consensus 34 ~~~~~~~~~~SpdG---~~l~~~~~~~g~~~l~~~d~~~~~------~~~l~~~~~----~~~~~~~~spdg-~~l~~~- 98 (396)
T 3c5m_A 34 HRNYFYQKCFTQDG---KKLLFAGDFDGNRNYYLLNLETQQ------AVQLTEGKG----DNTFGGFISTDE-RAFFYV- 98 (396)
T ss_dssp ECCCTTSCCBCTTS---CEEEEEECTTSSCEEEEEETTTTE------EEECCCSSC----BCTTTCEECTTS-SEEEEE-
T ss_pred cceeeecCcCCCCC---CEEEEEEecCCCceEEEEECCCCc------EEEeecCCC----CccccceECCCC-CEEEEE-
Confidence 33447788999985 233334433 3468888876441 111111110 001137899955 456666
Q ss_pred cccceEEEEeCCc-ceEEEEeeeCC-----cceeeecc----------CCCCCCCCcEEEE-----EcCCeEEEEeCCcc
Q 017601 169 SFSKSIDVYDQDI-HLRTLRTLWYP-----SSLNFVQN----------LSPVNGGPNMLAV-----TEGCQLTIWDLRMK 227 (369)
Q Consensus 169 s~d~~i~lwd~~~-~~~~~~~~~~~-----~~v~~~~~----------~~~~~~~~~lla~-----s~d~~v~iwD~~~~ 227 (369)
+.++.|.+||... ..+.+...... ..+.+... ..++|++..++.. ..+..|.+||+.++
T Consensus 99 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred EcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence 5677899999753 22222211110 01111000 1234555555443 34568999999887
Q ss_pred cCCceeeeeeccCCCcEEEEEECC-CC-cEEEEeCC------CcEEEEeCCCceeeeeccccc-cCceEEEEEcCCCCCE
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSS-TG-NIAVAGAD------RTVTIYDPRRWSALSRWVHCS-KYEITGLSFSSIDSNY 298 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp-~g-~lasgs~D------~~v~vwD~~~~~~~~~~~~h~-~~~v~~l~~sp~d~~~ 298 (369)
+......+. ..+..+.|+| ++ .|+..+.+ ..|.+||+..++.. .+..+. ...+..+.|+| |++.
T Consensus 179 ---~~~~~~~~~--~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~sp-dg~~ 251 (396)
T 3c5m_A 179 ---ELEVIHQDT--AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIP-DGSA 251 (396)
T ss_dssp ---CEEEEEEES--SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECT-TSSC
T ss_pred ---cEEeeccCC--cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECC-CCCE
Confidence 444334443 7789999999 77 67666543 36888898765433 333331 23588899999 9998
Q ss_pred EEEEECC-----CeEEEEECcCCceeEEEEcCCCeeeeeEcC-CCCEEEEEe----------------CCCcEEEEECCC
Q 017601 299 IYVQGVD-----YEVFCGQWRESSKVFAFRGDSNWLGFSKCS-NRDVLGGWS----------------DSGSIFVADVVA 356 (369)
Q Consensus 299 l~s~s~D-----~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~-d~~~l~sgs----------------~dg~I~iWd~~~ 356 (369)
|+..+.+ +.|++||+.+++......... .....++ ||++|+.++ .++.|++||+.+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMPP--CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECCS--EEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCCC--CCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 8777654 459999998876544433222 2244567 999888765 347899999987
Q ss_pred Ccc
Q 017601 357 KEN 359 (369)
Q Consensus 357 ~~~ 359 (369)
++.
T Consensus 330 ~~~ 332 (396)
T 3c5m_A 330 KSA 332 (396)
T ss_dssp TBC
T ss_pred Cce
Confidence 753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-12 Score=127.70 Aligned_cols=241 Identities=12% Similarity=-0.010 Sum_probs=141.1
Q ss_pred EEEEe--ecCCCCce-EEEEEecCCcEEEEEec--C-CCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 97 SIALA--ETDSSGYM-VLGSVDSYGHLIVSKLD--T-SGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 97 ~l~~s--~~~~~~~~-~las~d~~g~v~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
..+|+ ||+ .. ++.+.+.+..||+++++ . + . ...+...........+.+++|+|++. .|+.+ +.
T Consensus 81 ~~~~~~SPDg---~~~la~~~~~~~~l~~~~~~~~g~~-~-----~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~-~~ 149 (662)
T 3azo_A 81 PWAGVPRPAG---GPLLVFTHFGDQRLYAFEPDAPGGA-V-----PRPLTPVSAVGGGLRWADPVLLPERG-EVWCM-AE 149 (662)
T ss_dssp CEEEECCSSS---SCEEEEEBTTTCCEEEECTTSTTCC-C-----CEECSCCCCSTTCEEEEEEEEETTTT-EEEEE-EE
T ss_pred cceeeeecCC---CeEEEEEECCCCeEEEEcCCCCCCC-C-----CEeccCCccCCCCccccCcEECCCCC-EEEEE-Ee
Confidence 55666 874 34 45555557788888775 2 2 1 11111110000112355799999655 55555 45
Q ss_pred c----------ceEEEEeCCc-------ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcC--------CeEEEEeCC
Q 017601 171 S----------KSIDVYDQDI-------HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEG--------CQLTIWDLR 225 (369)
Q Consensus 171 d----------~~i~lwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d--------~~v~iwD~~ 225 (369)
+ .+|.+||... ..+.+. ..+.. +.....++||+..|+.++.+ ..|.+||+.
T Consensus 150 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~---~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~ 225 (662)
T 3azo_A 150 EFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS-DDAHR---FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT 225 (662)
T ss_dssp EECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS-CSCSS---EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred cccCCCCCCceeEEEEEECCCCccccCCceeEEE-ecCCC---cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence 5 5899999754 333221 01222 22223356778788877754 379999998
Q ss_pred -cccCCceeeeee-ccCCCcEEEEEECCCC-cEEEEeCCC--cEEEEeCCCceeeeeccccccCc--------eEEEEEc
Q 017601 226 -MKENGGCLHRIC-GSVGDILYAVCSSSTG-NIAVAGADR--TVTIYDPRRWSALSRWVHCSKYE--------ITGLSFS 292 (369)
Q Consensus 226 -~~~~~~~~~~~~-~~~~~~v~~v~~sp~g-~lasgs~D~--~v~vwD~~~~~~~~~~~~h~~~~--------v~~l~~s 292 (369)
++.. .....+. ++ ...+..++|+||| ++++++.++ .|.+||+.+++......++ ... +..++|+
T Consensus 226 ~~g~~-~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~p~w~~~~~~~~~~ 302 (662)
T 3azo_A 226 EDGRF-ADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE-EEFAGPLWTPGMRWFAPL 302 (662)
T ss_dssp TTSCE-EEEEEEEEET-TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS-SBSSCCCCSTTCCSEEEC
T ss_pred CCCcc-cccEEeCCCC-CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc-ccccCccccccCceEeEe
Confidence 3410 1233333 32 3789999999999 888888888 5666676666654433333 222 5689999
Q ss_pred CCCCCEEEEEECCCeEEEE--ECcCCceeEEEEcCCCeeeeeEcCCCC--EEEEEeCCC--cEEEEECCCCc
Q 017601 293 SIDSNYIYVQGVDYEVFCG--QWRESSKVFAFRGDSNWLGFSKCSNRD--VLGGWSDSG--SIFVADVVAKE 358 (369)
Q Consensus 293 p~d~~~l~s~s~D~~i~vw--d~~~~~~~~~~~g~~~~~~~~~~~d~~--~l~sgs~dg--~I~iWd~~~~~ 358 (369)
| +++++++++. ++++|| |+.+++ +..+..|.........++++ ++++++.+. .|++||+.+++
T Consensus 303 ~-~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 303 A-NGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp T-TSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred C-CCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9 9999999998 999999 554444 56666655222111023343 344555554 45566766664
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-12 Score=130.58 Aligned_cols=192 Identities=10% Similarity=0.091 Sum_probs=123.4
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcce-EEEEeeeCC---cceeeeccCCCCCCCCcEEEEEcC---------CeE
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHL-RTLRTLWYP---SSLNFVQNLSPVNGGPNMLAVTEG---------CQL 219 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~-~~~~~~~~~---~~v~~~~~~~~~~~~~~lla~s~d---------~~v 219 (369)
+++|+|++ .+++++ |++|++||..... ..+ ...+. ..+.+ ....++||+..++.++.+ +.+
T Consensus 21 ~~~w~~dg-~~~~~~---~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 21 SLRWISDH-EYLYKQ---ENNILVFNAEYGNSSVF-LENSTFDEFGHSI-NDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CEEECSSS-EEEEEE---TTEEEEEETTTCCEEEE-ECTTTTTTCCSCC-CEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccEECCCC-cEEEEc---CCcEEEEECCCCceEEE-Eechhhhhhcccc-cceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 59999954 555553 8999999975322 222 11111 11111 001135778788887765 566
Q ss_pred EEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee-eccccccCce-----------
Q 017601 220 TIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS-RWVHCSKYEI----------- 286 (369)
Q Consensus 220 ~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~v----------- 286 (369)
.+||+.++ +.. .+..+ ...+...+||||| .||.++ |+.|.+||+.+++... +..++ ...+
T Consensus 95 ~~~d~~~~---~~~-~l~~~-~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~-~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 95 DIYDLNKR---QLI-TEERI-PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGK-EDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEETTTT---EEC-CSSCC-CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCB-TTTEEESBCCHHHHH
T ss_pred EEEECCCC---cEE-EcccC-CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCC-ccceecCcccccccc
Confidence 79999987 433 34433 3779999999999 888875 7899999998876543 23343 3322
Q ss_pred ------EEEEEcCCCCCEEEEEECCC------------------------------------eEEEEECcC---Cc--ee
Q 017601 287 ------TGLSFSSIDSNYIYVQGVDY------------------------------------EVFCGQWRE---SS--KV 319 (369)
Q Consensus 287 ------~~l~~sp~d~~~l~s~s~D~------------------------------------~i~vwd~~~---~~--~~ 319 (369)
.++.||| ||+.||..+.|. +|++||+.+ ++ ..
T Consensus 168 e~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~ 246 (740)
T 4a5s_A 168 EVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS 246 (740)
T ss_dssp HTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred hhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence 3589999 999999987543 478888887 63 22
Q ss_pred EEEE------cCCCe-eeeeEcCCCCEEEEEeC----CCcEEEEECCCCc
Q 017601 320 FAFR------GDSNW-LGFSKCSNRDVLGGWSD----SGSIFVADVVAKE 358 (369)
Q Consensus 320 ~~~~------g~~~~-~~~~~~~d~~~l~sgs~----dg~I~iWd~~~~~ 358 (369)
..+. +|..+ ..+..++||++++.... +..|++||+.+++
T Consensus 247 ~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 247 IQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred EEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 2232 24422 23344679987665543 3479999999886
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-10 Score=104.41 Aligned_cols=239 Identities=8% Similarity=-0.064 Sum_probs=146.0
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
+..-..+++|+|++ ..++.+....+.|+.|+...+ ...+.. . .....+++|+|++ .++++. ..
T Consensus 26 ~~~~~eg~~~d~~g---~~l~~~~~~~~~i~~~~~~~~-----~~~~~~--~-----~~~~~~l~~~~dg-~l~v~~-~~ 88 (296)
T 3e5z_A 26 GFTWTEGPVYVPAR---SAVIFSDVRQNRTWAWSDDGQ-----LSPEMH--P-----SHHQNGHCLNKQG-HLIACS-HG 88 (296)
T ss_dssp CCSSEEEEEEEGGG---TEEEEEEGGGTEEEEEETTSC-----EEEEES--S-----CSSEEEEEECTTC-CEEEEE-TT
T ss_pred CCccccCCeEeCCC---CEEEEEeCCCCEEEEEECCCC-----eEEEEC--C-----CCCcceeeECCCC-cEEEEe-cC
Confidence 34556799999984 236777777889999987743 111211 1 1224589999954 455555 66
Q ss_pred cceEEEEeC-CcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE---c--------------CCeEEEEeCCcccCCce
Q 017601 171 SKSIDVYDQ-DIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT---E--------------GCQLTIWDLRMKENGGC 232 (369)
Q Consensus 171 d~~i~lwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s---~--------------d~~v~iwD~~~~~~~~~ 232 (369)
++.|.+||. ......+................+++++..+++.+ . .+.|..+|.. + +
T Consensus 89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g---~- 163 (296)
T 3e5z_A 89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G---T- 163 (296)
T ss_dssp TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S---C-
T ss_pred CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C---C-
Confidence 789999997 33333332111111111111112235565555421 1 2355555554 3 3
Q ss_pred eeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCC-Ccee---eeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 233 LHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPR-RWSA---LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~-~~~~---~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
+..+... ....+.++|+|+| .+++.+.++.|.+||+. +++. ...+..+ ...+.++++++ +|+++++. ++.
T Consensus 164 ~~~~~~~-~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~p~~i~~d~-~G~l~v~~--~~~ 238 (296)
T 3e5z_A 164 LSAPIRD-RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE-PGKTDGLRVDA-GGLIWASA--GDG 238 (296)
T ss_dssp EEEEECC-CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS-SSCCCSEEEBT-TSCEEEEE--TTE
T ss_pred EEEeecC-CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC-CCCCCeEEECC-CCCEEEEc--CCe
Confidence 3333333 3677999999999 66777888999999987 4443 2333334 56678899999 99877766 889
Q ss_pred EEEEECcCCceeEEEEcCCCeeeeeE-cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 308 VFCGQWRESSKVFAFRGDSNWLGFSK-CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~~~~~~~~-~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|.+||.. ++.+..+..+....++.. .+++..|+.++.++ +..++.++++
T Consensus 239 v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 239 VHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp EEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred EEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 9999986 677777766553233333 45888888888764 4444555543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-11 Score=111.93 Aligned_cols=207 Identities=10% Similarity=-0.005 Sum_probs=134.3
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccccccc--CCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVL--PQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
++-...+.|++++++ .+.++...++.|++|+.+.....+. ..... +......-..-.+++|+|.+..++++.
T Consensus 88 ~~~~~p~gia~d~~g----~l~v~d~~~~~v~~~~~~g~~~~~~--~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d 161 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDG----NYWVTDVALHQVFKLDPHSKEGPLL--ILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD 161 (329)
T ss_dssp TTCSSEEEEEECTTS----CEEEEETTTTEEEEECTTCSSCCSE--EESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE
T ss_pred CccCCceEEEECCCC----CEEEEECCCCEEEEEeCCCCeEEEE--EecccCCCCCCccccCCCcEEEEeCCCCeEEEEe
Confidence 344578899999874 4666666678899998753310110 01000 000000011245899999555555555
Q ss_pred ec-ccceEEEEeCCc-ceEEEEee-----------eCCcceeeeccCCCCCC-CCcEEEEEcCCeEEEEeCCcccCCcee
Q 017601 168 RS-FSKSIDVYDQDI-HLRTLRTL-----------WYPSSLNFVQNLSPVNG-GPNMLAVTEGCQLTIWDLRMKENGGCL 233 (369)
Q Consensus 168 ~s-~d~~i~lwd~~~-~~~~~~~~-----------~~~~~v~~~~~~~~~~~-~~~lla~s~d~~v~iwD~~~~~~~~~~ 233 (369)
+ .++.|++||.+. .+..+... ..|..+.+. ++ +..+++...++.|++||..++ +.+
T Consensus 162 -~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d------~~~g~l~v~d~~~~~I~~~~~~~G---~~~ 231 (329)
T 3fvz_A 162 -GYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALV------PHLDQLCVADRENGRIQCFKTDTK---EFV 231 (329)
T ss_dssp -CSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEE------TTTTEEEEEETTTTEEEEEETTTC---CEE
T ss_pred -CCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEE------CCCCEEEEEECCCCEEEEEECCCC---cEE
Confidence 5 589999999653 33333211 123334333 44 334445556889999999877 677
Q ss_pred eeeecc-CCCcEEEEEECCCC-cEEEE-------eCCCcEEEEeCCCceeeeecc---ccccCceEEEEEcCCCCCEEEE
Q 017601 234 HRICGS-VGDILYAVCSSSTG-NIAVA-------GADRTVTIYDPRRWSALSRWV---HCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 234 ~~~~~~-~~~~v~~v~~sp~g-~lasg-------s~D~~v~vwD~~~~~~~~~~~---~h~~~~v~~l~~sp~d~~~l~s 301 (369)
..+... .+..+++++|+| + .+++. ..+.+|++||+.+++.+..+. ++ .....+|+++| +|.++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~~~p~~ia~~~-dG~lyva 308 (329)
T 3fvz_A 232 REIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH-FDMPHDIVASE-DGTVYIG 308 (329)
T ss_dssp EEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSC-CSSEEEEEECT-TSEEEEE
T ss_pred EEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc-cCCeeEEEECC-CCCEEEE
Confidence 766422 146789999999 6 44443 334589999999999888873 56 67799999999 9988888
Q ss_pred EECCCeEEEEECcC
Q 017601 302 QGVDYEVFCGQWRE 315 (369)
Q Consensus 302 ~s~D~~i~vwd~~~ 315 (369)
...+++|++|++..
T Consensus 309 d~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 309 DAHTNTVWKFTLTE 322 (329)
T ss_dssp ESSSCCEEEEEEEE
T ss_pred ECCCCEEEEEeCCc
Confidence 88899999999864
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-10 Score=107.13 Aligned_cols=231 Identities=7% Similarity=0.012 Sum_probs=152.7
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
...+.+.+..+ .+.++....+.|.++|..+... ...+.. .....++++++++ .++++. ..++
T Consensus 44 ~~~~~i~~~~~-----~lyv~~~~~~~v~viD~~t~~~-----~~~i~~------~~~p~~i~~~~~g-~lyv~~-~~~~ 105 (328)
T 3dsm_A 44 DVAQSMVIRDG-----IGWIVVNNSHVIFAIDINTFKE-----VGRITG------FTSPRYIHFLSDE-KAYVTQ-IWDY 105 (328)
T ss_dssp SCEEEEEEETT-----EEEEEEGGGTEEEEEETTTCCE-----EEEEEC------CSSEEEEEEEETT-EEEEEE-BSCS
T ss_pred ccceEEEEECC-----EEEEEEcCCCEEEEEECcccEE-----EEEcCC------CCCCcEEEEeCCC-eEEEEE-CCCC
Confidence 45678888543 4555556678999999876521 111111 0123479998854 444444 5789
Q ss_pred eEEEEeCCc--ceEEEEeee------CCcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 173 SIDVYDQDI--HLRTLRTLW------YPSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 173 ~i~lwd~~~--~~~~~~~~~------~~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
.|.+||... ....+.... .+..+.+ . ++.+..+. .+++|.+||++++ +.+.++... .
T Consensus 106 ~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-------~~~lyv~~~~~~~~v~viD~~t~---~~~~~i~~g--~ 172 (328)
T 3dsm_A 106 RIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-------GKYVYVNCWSYQNRILKIDTETD---KVVDELTIG--I 172 (328)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-------TTEEEEEECTTCCEEEEEETTTT---EEEEEEECS--S
T ss_pred eEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-------CCEEEEEcCCCCCEEEEEECCCC---eEEEEEEcC--C
Confidence 999999863 233343333 3444444 2 34555554 3889999999988 667766654 5
Q ss_pred cEEEEEECCCC-cEEEEeCC----------CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 243 ILYAVCSSSTG-NIAVAGAD----------RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D----------~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
....++++|+| +++++..+ +.|.+||..+++...++.-........++|+| +++.|+.+.. .|.+|
T Consensus 173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~ 249 (328)
T 3dsm_A 173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRM 249 (328)
T ss_dssp CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEE
T ss_pred CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEE
Confidence 56789999999 55555444 78999999998887766532123689999999 9998887654 89999
Q ss_pred ECcCCceeE-E-EEc-CCCeeeeeEcC-CCCEEEEE----eCCCcEEEEECCCCc
Q 017601 312 QWRESSKVF-A-FRG-DSNWLGFSKCS-NRDVLGGW----SDSGSIFVADVVAKE 358 (369)
Q Consensus 312 d~~~~~~~~-~-~~g-~~~~~~~~~~~-d~~~l~sg----s~dg~I~iWd~~~~~ 358 (369)
|..+++... . +.. -....++...+ ++.+.++. ..++.|.+||.. ++
T Consensus 250 d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 250 PVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp ETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred ECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 998866431 1 111 12224565566 67777777 788999999987 54
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.3e-11 Score=104.54 Aligned_cols=236 Identities=10% Similarity=-0.005 Sum_probs=147.3
Q ss_pred eeeEEEEeecCCCCceEEE-EEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 94 EVQSIALAETDSSGYMVLG-SVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~la-s~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
...+|++++++ .+.+ +....+.|++|+...... ..+... . .....++++++++ .++++. . ++
T Consensus 25 ~p~~i~~~~~g----~l~v~~~~~~~~i~~~~~~~~~~----~~~~~~-~-----~~~p~~i~~~~~g-~l~v~~-~-~~ 87 (270)
T 1rwi_B 25 SPSGVAVDSAG----NVYVTSEGMYGRVVKLATGSTGT----TVLPFN-G-----LYQPQGLAVDGAG-TVYVTD-F-NN 87 (270)
T ss_dssp CEEEEEECTTC----CEEEEECSSSCEEEEECC---------EECCCC-S-----CCSCCCEEECTTC-CEEEEE-T-TT
T ss_pred CccceEECCCC----CEEEEccCCCCcEEEecCCCccc----ceEeeC-C-----cCCcceeEECCCC-CEEEEc-C-CC
Confidence 66789998873 4555 435667899887653311 001000 0 0112369999954 455554 4 88
Q ss_pred eEEEEeCCcce-EEEEee--eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 173 SIDVYDQDIHL-RTLRTL--WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 173 ~i~lwd~~~~~-~~~~~~--~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
.|.+||..... ..+... ..+..+.+ ++++..+++...++.|.+||..+. ......... ...++++++
T Consensus 88 ~i~~~d~~~~~~~~~~~~~~~~p~~i~~------~~~g~l~v~~~~~~~i~~~~~~~~---~~~~~~~~~-~~~p~~i~~ 157 (270)
T 1rwi_B 88 RVVTLAAGSNNQTVLPFDGLNYPEGLAV------DTQGAVYVADRGNNRVVKLAAGSK---TQTVLPFTG-LNDPDGVAV 157 (270)
T ss_dssp EEEEECTTCSCCEECCCCSCSSEEEEEE------CTTCCEEEEEGGGTEEEEECTTCC---SCEECCCCS-CCSCCCEEE
T ss_pred EEEEEeCCCceEeeeecCCcCCCcceEE------CCCCCEEEEECCCCEEEEEECCCc---eeEeecccc-CCCceeEEE
Confidence 99999975432 222111 12223322 244555555556789999986554 222211111 246788999
Q ss_pred CCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC-CC
Q 017601 250 SSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD-SN 327 (369)
Q Consensus 250 sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~-~~ 327 (369)
+|+| .+++...++.|.+||............+ ...+.++++++ ++.++++...++.|.+||............+ ..
T Consensus 158 ~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 235 (270)
T 1rwi_B 158 DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD-ITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNT 235 (270)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS-CCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSC
T ss_pred eCCCCEEEEECCCCEEEEEecCCCceEeecccC-CCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCC
Confidence 9999 6666667889999998876554433344 46789999999 9988888778899999998765433222222 22
Q ss_pred eeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 328 WLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 328 ~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
..++...++|.++++.+.++.|++++....+
T Consensus 236 p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 236 PLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 2455556788999999999999999987654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=8.2e-11 Score=109.74 Aligned_cols=240 Identities=10% Similarity=-0.002 Sum_probs=145.7
Q ss_pred EEEEeecCCCCceEEEEEe----------cCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 97 SIALAETDSSGYMVLGSVD----------SYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 97 ~l~~s~~~~~~~~~las~d----------~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.++|+||+ ..++.++ .++.|.+||..+... + ....+.+.....+ ..-.+++|+|++..++++
T Consensus 54 ~i~~spdg----~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-~--~~i~~~~~~~~~g-~~p~~i~~spdg~~l~v~ 125 (361)
T 2oiz_A 54 HVQVSNDG----KKIYTMTTYHERITRGKRSDVVEVWDADKLTF-E--KEISLPPKRVQGL-NYDGLFRQTTDGKFIVLQ 125 (361)
T ss_dssp EEEECTTS----SEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-E--EEEEECTTBCCBC-CCGGGEEECTTSSEEEEE
T ss_pred ceEECCCC----CEEEEEEecccccccCCCCCEEEEEECcCCcE-E--EEEEcCccccccC-CCcceEEECCCCCEEEEE
Confidence 78999984 4555544 356799999764311 1 1111111000000 112369999966544444
Q ss_pred EecccceEEEEeCCcceEEEEe-eeCCcc--eeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceee------eee
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRT-LWYPSS--LNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLH------RIC 237 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~-~~~~~~--v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~------~~~ 237 (369)
....+++|.+||..... .+.. ...+.. +.+.. . ....+++.+.||++.+|+..... +... .+.
T Consensus 126 n~~~~~~v~v~d~~~~~-~~~~~i~~~~~~~v~~~p---~--~~~~~~~~~~dg~~~~v~~~~~g--~~~~~~~~~~~~~ 197 (361)
T 2oiz_A 126 NASPATSIGIVDVAKGD-YVEDVTAAAGCWSVIPQP---N--RPRSFMTICGDGGLLTINLGEDG--KVASQSRSKQMFS 197 (361)
T ss_dssp EESSSEEEEEEETTTTE-EEEEEGGGTTEEEEEECT---T--SSSEEEEEETTSSEEEEEECTTS--SEEEEEECCCCSC
T ss_pred CCCCCCeEEEEECCCCc-EEEEEecCCCcceeEEcC---C--CCeeEEEECCCCcEEEEEECCCC--cEeeeccccceEc
Confidence 32236899999987542 2222 222221 11211 1 12577888899999999986521 3331 122
Q ss_pred ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCcee--eeeccc------cc---cCceEEEEEcCCCCCEEEEEEC-
Q 017601 238 GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSA--LSRWVH------CS---KYEITGLSFSSIDSNYIYVQGV- 304 (369)
Q Consensus 238 ~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~--~~~~~~------h~---~~~v~~l~~sp~d~~~l~s~s~- 304 (369)
.. ..++ .+.++|++ .++..+.++.|.++|+..... ...+.- +. ......++|+| +++.++.+..
T Consensus 198 ~~-~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~ 274 (361)
T 2oiz_A 198 VK-DDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHP 274 (361)
T ss_dssp TT-TSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEES
T ss_pred CC-CCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEcc
Confidence 11 1222 34456777 667777899999999875432 222110 10 01122378999 8887776543
Q ss_pred ----------CCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 305 ----------DYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 305 ----------D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.++|.+||+.+.+.+..+..+. ..++...+||++|++++. +.|.+||.+++
T Consensus 275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 275 DGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp SCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3589999999999999998766 567777889999999887 99999999998
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-10 Score=103.06 Aligned_cols=188 Identities=13% Similarity=0.184 Sum_probs=128.4
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEee-------eCCcceeeeccCCCCCCCCcEEEEE-c-CCeEEE
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRTL-------WYPSSLNFVQNLSPVNGGPNMLAVT-E-GCQLTI 221 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~lla~s-~-d~~v~i 221 (369)
.+++++|++ .++++. ..++.|.+||... ....+... ..+..+.+.. + ++.++.+. . ++.|.+
T Consensus 33 ~~v~~~~~g-~l~v~~-~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~-----~-~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 33 SGVAVNAQN-DIIVAD-TNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVR-----N-SGDIIVTERSPTHQIQI 104 (286)
T ss_dssp EEEEECTTC-CEEEEE-GGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEET-----T-TTEEEEEECGGGCEEEE
T ss_pred ceEEECCCC-CEEEEE-CCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEc-----C-CCeEEEEcCCCCCEEEE
Confidence 479999954 455655 7789999999753 23333211 1222333321 3 34555544 3 889999
Q ss_pred EeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc--ccccCceEEEEEcCCCCCE
Q 017601 222 WDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV--HCSKYEITGLSFSSIDSNY 298 (369)
Q Consensus 222 wD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~--~h~~~~v~~l~~sp~d~~~ 298 (369)
|| .++ +.+..+.......+++++++|+| ++++...++.|.+||.. ++.+..+. ++ ...+.+++++| ++++
T Consensus 105 ~d-~~g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~-~~~p~~i~~~~-~g~l 177 (286)
T 1q7f_A 105 YN-QYG---QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKH-LEFPNGVVVND-KQEI 177 (286)
T ss_dssp EC-TTS---CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTT-CSSEEEEEECS-SSEE
T ss_pred EC-CCC---cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCc-cCCcEEEEECC-CCCE
Confidence 99 445 55555543213578999999999 77777778999999964 55555553 34 45789999999 9998
Q ss_pred EEEEECCCeEEEEECcCCceeEEEEcC---CCeeeeeEcCCCCEEEEEeCCC-cEEEEECC
Q 017601 299 IYVQGVDYEVFCGQWRESSKVFAFRGD---SNWLGFSKCSNRDVLGGWSDSG-SIFVADVV 355 (369)
Q Consensus 299 l~s~s~D~~i~vwd~~~~~~~~~~~g~---~~~~~~~~~~d~~~l~sgs~dg-~I~iWd~~ 355 (369)
+++.+.++.|++||.. ++.+..+..+ ....++...++|.++++...++ .|++||..
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 8888889999999974 4566666443 2224555566899999988886 99999964
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.2e-11 Score=120.43 Aligned_cols=243 Identities=10% Similarity=0.036 Sum_probs=147.5
Q ss_pred CccceeeEEEEeecCCCCceEEE-EEecCC----cEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 90 PHRSEVQSIALAETDSSGYMVLG-SVDSYG----HLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~la-s~d~~g----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
+|...+..++||||+ ..|| +.+..| .|++||+.++.. .. ..... ..+.+++|+|++. .|
T Consensus 122 ~~~~~~~~~~~SPDg----~~la~~~~~~G~~~~~i~v~d~~tg~~-~~---~~~~~-------~~~~~~~wspDg~-~l 185 (710)
T 2xdw_A 122 DGTVALRGYAFSEDG----EYFAYGLSASGSDWVTIKFMKVDGAKE-LP---DVLER-------VKFSCMAWTHDGK-GM 185 (710)
T ss_dssp TSCEEEEEEEECTTS----SEEEEEEEETTCSCEEEEEEETTTTEE-EE---EEEEE-------ECSCCEEECTTSS-EE
T ss_pred CCCEEEEEEEECCCC----CEEEEEEcCCCCceEEEEEEECCCCCC-Cc---ccccC-------cccceEEEEeCCC-EE
Confidence 455678999999985 3444 444444 799999986521 10 01110 0123699999655 45
Q ss_pred EEEecccce----------------EEEEeCCcce---EEEEeee-CCcceeeeccCCCCCCCCcEEEEEc-----CCeE
Q 017601 165 AVARSFSKS----------------IDVYDQDIHL---RTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTE-----GCQL 219 (369)
Q Consensus 165 a~~~s~d~~----------------i~lwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~-----d~~v 219 (369)
+.+ +.++. |.+|+++... ..+.... ++....... +++|+..|+..+. +..|
T Consensus 186 ~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~---~SpDg~~l~~~~~~~~~~~~~l 261 (710)
T 2xdw_A 186 FYN-AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE---LSDDGRYVLLSIREGCDPVNRL 261 (710)
T ss_dssp EEE-ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE---ECTTSCEEEEEEECSSSSCCEE
T ss_pred EEE-EECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE---EcCCCCEEEEEEEccCCCccEE
Confidence 555 44444 9999986322 1111111 122122222 3467777777664 5789
Q ss_pred EEEeCCc------ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC----CcEEEEeCCCcee--eeeccccccC--
Q 017601 220 TIWDLRM------KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD----RTVTIYDPRRWSA--LSRWVHCSKY-- 284 (369)
Q Consensus 220 ~iwD~~~------~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D----~~v~vwD~~~~~~--~~~~~~h~~~-- 284 (369)
.+||+.+ +. .....+..+ ...+.. .|+|+| .|+..+.+ ..|.+||+.++.. ...+..| ..
T Consensus 262 ~~~d~~~~~~~~~~~--~~~~~l~~~-~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~ 336 (710)
T 2xdw_A 262 WYCDLQQESNGITGI--LKWVKLIDN-FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE-HEKD 336 (710)
T ss_dssp EEEEGGGSSSSSCSS--CCCEEEECS-SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-CSSC
T ss_pred EEEECcccccccCCc--cceEEeeCC-CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC-CCCC
Confidence 9999986 41 234455544 244444 488898 66555443 3699999987642 3455555 33
Q ss_pred ceEEEEEcCCCCCEEEEEECCCe--EEEEECcCCceeEEEEcCCCee-eeeEcCCCCEEE-EEe---CCCcEEEEECCCC
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYE--VFCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLG-GWS---DSGSIFVADVVAK 357 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~--i~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~-sgs---~dg~I~iWd~~~~ 357 (369)
.+.++.|++ ++.++++...|+. |.+||+.+++.+..+..+.... .+...+++..|+ +.+ ..++|+.||+.++
T Consensus 337 ~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 337 VLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred eEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 688899998 7888888888884 5667776777767776654222 233345666544 333 3479999999887
Q ss_pred c
Q 017601 358 E 358 (369)
Q Consensus 358 ~ 358 (369)
+
T Consensus 416 ~ 416 (710)
T 2xdw_A 416 E 416 (710)
T ss_dssp S
T ss_pred c
Confidence 6
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.1e-11 Score=110.77 Aligned_cols=242 Identities=12% Similarity=-0.010 Sum_probs=136.8
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE--
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA-- 167 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~-- 167 (369)
+|...+..++|+||+ ..|+..+.++.+++||+.++.. ...+.. +... .......++|++. .++..
T Consensus 78 ~~~~~~~~~~~spdg----~~l~~~~~~~~l~~~d~~~g~~---~~~~~~--~~~~---~~~~~~~~~~dg~-~l~~~~~ 144 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDD----DALFYVKDGRNLMRVDLATLEE---NVVYQV--PAEW---VGYGTWVANSDCT-KLVGIEI 144 (388)
T ss_dssp SSCBCSSSCEECTTS----SEEEEEETTTEEEEEETTTCCE---EEEEEC--CTTE---EEEEEEEECTTSS-EEEEEEE
T ss_pred CCCCCccceEEcCCC----CEEEEEeCCCeEEEEECCCCcc---eeeeec--hhhc---ccccceeECCCCC-eeccccc
Confidence 455555678899984 6788877788999999986521 001111 1000 0001233577544 44421
Q ss_pred -------------------ecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCC-CCCcEEEEEcC------CeEE
Q 017601 168 -------------------RSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVN-GGPNMLAVTEG------CQLT 220 (369)
Q Consensus 168 -------------------~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~~lla~s~d------~~v~ 220 (369)
...+..|.+||... ..+.+.. +...+.... ++| |+..|+.++.+ ..|.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~--~~~~~~~~~---~sp~dg~~l~~~~~~~~~~~~~~l~ 219 (388)
T 3pe7_A 145 RREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ--ENQWLGHPI---YRPYDDSTVAFCHEGPHDLVDARMW 219 (388)
T ss_dssp EGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE--ESSCEEEEE---EETTEEEEEEEEECSCTTTSSCSEE
T ss_pred cCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec--CCccccccE---ECCCCCCEEEEEEecCCCCCcceEE
Confidence 12446789999753 3333322 222222222 346 66677776653 3778
Q ss_pred EEeCCcccCCceeeeeeccCC-CcEEEEEECCCC-cEEEEeC--C---CcEEEEeCCCcee--eeeccccccCc---eEE
Q 017601 221 IWDLRMKENGGCLHRICGSVG-DILYAVCSSSTG-NIAVAGA--D---RTVTIYDPRRWSA--LSRWVHCSKYE---ITG 288 (369)
Q Consensus 221 iwD~~~~~~~~~~~~~~~~~~-~~v~~v~~sp~g-~lasgs~--D---~~v~vwD~~~~~~--~~~~~~h~~~~---v~~ 288 (369)
++|...+ ....+..+.. ..+...+|+||| .|+..+. + ..|.+||+.+++. +..+.++ ... ...
T Consensus 220 ~~d~~~~----~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~ 294 (388)
T 3pe7_A 220 LINEDGT----NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC-SHLMSNYDG 294 (388)
T ss_dssp EEETTSC----CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE-EEEEECTTS
T ss_pred EEeCCCC----ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc-eeeeecCCC
Confidence 8887654 2333333211 357888999999 6655443 2 2399999998764 3344432 111 222
Q ss_pred EEEcCCCCCEEEEE---------ECCCeEEEEECcCCceeEEEEcCCC-----------eeeeeEcCCCCEEEEEe-CCC
Q 017601 289 LSFSSIDSNYIYVQ---------GVDYEVFCGQWRESSKVFAFRGDSN-----------WLGFSKCSNRDVLGGWS-DSG 347 (369)
Q Consensus 289 l~~sp~d~~~l~s~---------s~D~~i~vwd~~~~~~~~~~~g~~~-----------~~~~~~~~d~~~l~sgs-~dg 347 (369)
+.|+| ||+.|+.. ..+..|++||+.+++.......... ......++||+.|+..+ .+|
T Consensus 295 ~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g 373 (388)
T 3pe7_A 295 SLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHG 373 (388)
T ss_dssp SEEEE-EECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS
T ss_pred CeEcc-CCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCC
Confidence 47999 99987754 4567999999998765443322221 12334467998777655 577
Q ss_pred cEEEEECC
Q 017601 348 SIFVADVV 355 (369)
Q Consensus 348 ~I~iWd~~ 355 (369)
...+|.+.
T Consensus 374 ~~~l~~~~ 381 (388)
T 3pe7_A 374 KPALYLAT 381 (388)
T ss_dssp SCEEEEEE
T ss_pred ceeEEEEE
Confidence 77777654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-10 Score=102.32 Aligned_cols=181 Identities=11% Similarity=-0.010 Sum_probs=130.9
Q ss_pred eeEEEEecccceEEEEeCC--cceEEEEeee--CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee
Q 017601 162 SMAAVARSFSKSIDVYDQD--IHLRTLRTLW--YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC 237 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~ 237 (369)
.+++++ +.++.|.+||.. +.+..+.... .+..+.+. |+++.++ +.++.|..||. ++ +.+.++.
T Consensus 6 ~~lv~~-~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~------pdG~ilv--s~~~~V~~~d~-~G---~~~W~~~ 72 (276)
T 3no2_A 6 HLLVGG-SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAAT------KAGEILF--SYSKGAKMITR-DG---RELWNIA 72 (276)
T ss_dssp EEEEEC-TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEEC------TTSCEEE--ECBSEEEEECT-TS---CEEEEEE
T ss_pred cEEEee-CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEEC------CCCCEEE--eCCCCEEEECC-CC---CEEEEEc
Confidence 466666 899999999973 4444443321 22333332 4454444 56788999998 67 6777776
Q ss_pred ccCCCcEEEEEECCCC-cEEEEeC-CCcEEEEeCCCceeeeecc------ccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 238 GSVGDILYAVCSSSTG-NIAVAGA-DRTVTIYDPRRWSALSRWV------HCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 238 ~~~~~~v~~v~~sp~g-~lasgs~-D~~v~vwD~~~~~~~~~~~------~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
......+.++.+.|+| .+++.+. ++.|..+|. +++.+.++. ++ ......+++.+ +++++++.+.++.|.
T Consensus 73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~-~~~~~~v~~~~-~G~~lv~~~~~~~v~ 149 (276)
T 3no2_A 73 APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERP-HAQFRQINKNK-KGNYLVPLFATSEVR 149 (276)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSG-GGSCSCCEECT-TSCEEEEETTTTEEE
T ss_pred CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcc-cccccCceECC-CCCEEEEecCCCEEE
Confidence 5313578999999999 7777776 778888885 677665553 22 23456678899 999999999999999
Q ss_pred EEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 310 CGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 310 vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+||.+ ++.+..+.......+....+++.++++++.++.|..+|..+|+.
T Consensus 150 ~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 150 EIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp EECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred EECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 99998 99999887643223444566899999999999999999987764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-09 Score=97.87 Aligned_cols=243 Identities=8% Similarity=0.010 Sum_probs=145.2
Q ss_pred ceeeEEEEeecCCCCceEEEE-------EecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 93 SEVQSIALAETDSSGYMVLGS-------VDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las-------~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
....+++|++++ .+.++ ...++.|+.|+..++. ...+.. +...+. .....++++++++..+++
T Consensus 18 ~~~~~~~~~~~g----~l~~~~~~~~~~~~~~~~i~~~d~~~g~----~~~~~~-~~~~~~-~~~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 18 PGAEGPVFDKNG----DFYIVAPEVEVNGKPAGEILRIDLKTGK----KTVICK-PEVNGY-GGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp TTCEEEEECTTS----CEEEEETTCEETTEECCEEEEECTTTCC----EEEEEC-CEETTE-ECCEEEEEECSSSSEEEE
T ss_pred CCccCceECCCC----CEEEEEeccccCCCCCCEEEEEeCCCCc----EEEEEe-cccCCC-CCCCceEEEecCCCcEEE
Confidence 345789998763 45544 3556789999865431 111111 000000 123558999995244555
Q ss_pred EEecccceEEEEeCCcceEEE-EeeeCC---cceeeeccCCCCCCCCcEEEEEcC---------------CeEEEEeCCc
Q 017601 166 VARSFSKSIDVYDQDIHLRTL-RTLWYP---SSLNFVQNLSPVNGGPNMLAVTEG---------------CQLTIWDLRM 226 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~~~lla~s~d---------------~~v~iwD~~~ 226 (369)
+. . ...|.+||.......+ ...... ..+..+. +++++..+++...+ +.|..||..
T Consensus 88 ~~-~-~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~---~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 88 AD-M-RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA---FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp EE-T-TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEE---ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred EE-C-CCCEEEEeCCCCEEEEEeccCCCccccCCcCEE---ECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 44 3 3478889876333222 111000 1111221 23455455554444 567777765
Q ss_pred ccCCceeeeeeccCCCcEEEEEEC----CCC-cEEE-EeCCCcEEEEeCC-Cce-----eeeecccccc-CceEEEEEcC
Q 017601 227 KENGGCLHRICGSVGDILYAVCSS----STG-NIAV-AGADRTVTIYDPR-RWS-----ALSRWVHCSK-YEITGLSFSS 293 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~s----p~g-~las-gs~D~~v~vwD~~-~~~-----~~~~~~~h~~-~~v~~l~~sp 293 (369)
+ +........ ...+.++|+ |++ .|.. ...++.|.+||+. +++ ....+.++ . ..+..+++++
T Consensus 162 g---~~~~~~~~~--~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-~~~~p~~i~~d~ 235 (314)
T 1pjx_A 162 G---QMIQVDTAF--QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT-HEGGADGMDFDE 235 (314)
T ss_dssp S---CEEEEEEEE--SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC-SSCEEEEEEEBT
T ss_pred C---CEEEeccCC--CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC-CCCCCCceEECC
Confidence 3 333323332 557889999 999 5544 4568899999976 343 23344444 3 5688999999
Q ss_pred CCCCEEEEEECCCeEEEEECcCCceeEEEEcCC-CeeeeeEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 017601 294 IDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS-NWLGFSKCSNRD-VLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 294 ~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~-~~~~~~~~~d~~-~l~sgs~dg~I~iWd~~~~~ 358 (369)
+|+++++...++.|.+||.++++....+..+. ...++...+++. ++++...++.|..|++....
T Consensus 236 -~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 236 -DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp -TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred -CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 99999988889999999998777767776553 223444456888 55566667899999987643
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-10 Score=117.58 Aligned_cols=244 Identities=9% Similarity=-0.018 Sum_probs=142.0
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecC----CcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSY----GHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~----g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+|...+.+++||||+ ..+..+.+.. ..|++||+.++.. .. ...+. .. ...+++|+|++. .|+
T Consensus 118 ~~~~~~~~~~~SPDG---~~la~~~~~~G~~~~~i~v~dl~tg~~-~~--~~~~~----~~---~~~~~~wspDg~-~l~ 183 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDG---KKVAFAQKPNAADEAVLHVIDVDSGEW-SK--VDVIE----GG---KYATPKWTPDSK-GFY 183 (695)
T ss_dssp SSCEEEEEEEECTTS---SEEEEEEEETTCSCCEEEEEETTTCCB-CS--SCCBS----CC---TTCCCEECTTSS-EEE
T ss_pred CCCEEEEEEEECCCC---CEEEEEECCCCCceEEEEEEECCCCCC-cC--CcccC----cc---cccceEEecCCC-EEE
Confidence 567789999999985 2333344433 5799999986521 10 00111 00 013689999655 555
Q ss_pred EEecccce-------------EEEEeCCcce---EEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCC----eEEEEeC
Q 017601 166 VARSFSKS-------------IDVYDQDIHL---RTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGC----QLTIWDL 224 (369)
Q Consensus 166 ~~~s~d~~-------------i~lwd~~~~~---~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~----~v~iwD~ 224 (369)
.+ +.|.. |.+|+++... ..+... .++..+.... +++|+..|+..+.++ .|.+||.
T Consensus 184 ~~-~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~---~SpDG~~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 184 YE-WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD---LSRDGKYLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp EE-ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE---ECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred EE-EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE---ECCCCCEEEEEEeCCCCceEEEEEcC
Confidence 55 45554 9999986322 122111 1222222222 346787888776555 6777765
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe---CCCcEEEEeCCCcee--eeeccccc-cCceEEEEEcCCCCC
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG---ADRTVTIYDPRRWSA--LSRWVHCS-KYEITGLSFSSIDSN 297 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs---~D~~v~vwD~~~~~~--~~~~~~h~-~~~v~~l~~sp~d~~ 297 (369)
.++ . ...+..+ ...+....| ++| +++... .++.|.+||+.+++. ...+..|. ...+.+++|+ ++.
T Consensus 260 ~~~---~-~~~l~~~-~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~ 331 (695)
T 2bkl_A 260 GEK---D-FRLLVKG-VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGH 331 (695)
T ss_dssp TCS---S-CEEEEEC-SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTE
T ss_pred CCC---c-eEEeecC-CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCE
Confidence 444 2 3334333 244555556 566 444444 358899999987653 23444331 3457888887 467
Q ss_pred EEEEEECCCeEEEEECc-CCceeEEEEcC-CCe-eeeeEcCCCCEEE----EEeCCCcEEEEECCCCcc
Q 017601 298 YIYVQGVDYEVFCGQWR-ESSKVFAFRGD-SNW-LGFSKCSNRDVLG----GWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 298 ~l~s~s~D~~i~vwd~~-~~~~~~~~~g~-~~~-~~~~~~~d~~~l~----sgs~dg~I~iWd~~~~~~ 359 (369)
++++...|+..++|.+. .++....+..+ ... ..+...++++.|+ +....++|++||+.+++.
T Consensus 332 lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 332 LSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 88889999998888765 35555555444 211 1222245776665 333457899999988763
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8.3e-09 Score=94.27 Aligned_cols=240 Identities=7% Similarity=-0.084 Sum_probs=140.5
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
..+...+.+++|++++ .+.++...++.|++|+..++. ...+.. .. ...+.+++|+|++ .+++++
T Consensus 41 ~~~~~~~~~~~~~~~g----~l~~~~~~~~~i~~~d~~~~~----~~~~~~-~~-----~~~~~~i~~~~dg-~l~v~~- 104 (333)
T 2dg1_A 41 SKKGLQLEGLNFDRQG----QLFLLDVFEGNIFKINPETKE----IKRPFV-SH-----KANPAAIKIHKDG-RLFVCY- 104 (333)
T ss_dssp ESSCCCEEEEEECTTS----CEEEEETTTCEEEEECTTTCC----EEEEEE-CS-----SSSEEEEEECTTS-CEEEEE-
T ss_pred eccCccccCcEECCCC----CEEEEECCCCEEEEEeCCCCc----EEEEee-CC-----CCCcceEEECCCC-cEEEEe-
Confidence 3455667899999873 466666677889999876441 111110 11 1235689999954 455554
Q ss_pred ccc----ceEEEEeCCcc-eEEEEe-eeCCcceeeeccCCCCCCCCcEEEEEc------CCeEEEEeCCcccCCceeeee
Q 017601 169 SFS----KSIDVYDQDIH-LRTLRT-LWYPSSLNFVQNLSPVNGGPNMLAVTE------GCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 169 s~d----~~i~lwd~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~~~lla~s~------d~~v~iwD~~~~~~~~~~~~~ 236 (369)
..+ +.|.+||.... ...+.. ......+..+. +++++..+++... .+.|..||..++ +.....
T Consensus 105 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~---~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~---~~~~~~ 178 (333)
T 2dg1_A 105 LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMV---FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR---TVTPII 178 (333)
T ss_dssp CTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEE---ECTTSCEEEEECCCBTTBCCEEEEEECTTSC---CEEEEE
T ss_pred CCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceE---ECCCCCEEEEeccccccCCCceEEEEeCCCC---EEEEee
Confidence 445 68999987532 221111 11111222222 2355544444432 245666666544 222222
Q ss_pred eccCCCcEEEEEECCCC-cEE-EEeCCCcEEEEeCCC-ceeee--------eccccccCceEEEEEcCCCCCEEEEEECC
Q 017601 237 CGSVGDILYAVCSSSTG-NIA-VAGADRTVTIYDPRR-WSALS--------RWVHCSKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g-~la-sgs~D~~v~vwD~~~-~~~~~--------~~~~h~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
... ..++.++|+|+| .|+ +.+.++.|.+||+++ +..+. .+.++ ..+..+++++ +++++++...+
T Consensus 179 ~~~--~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d~-~G~l~v~~~~~ 253 (333)
T 2dg1_A 179 QNI--SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDS-DDNLYVAMYGQ 253 (333)
T ss_dssp EEE--SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBT-TCCEEEEEETT
T ss_pred cCC--CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC--CCCCceEECC-CCCEEEEEcCC
Confidence 222 567899999999 554 455688999999864 33222 12222 3678899999 99998888888
Q ss_pred CeEEEEECcCCceeEEEEcCCC-------eeeeeEcCCCCEEEEEeCC------CcEEEEECCC
Q 017601 306 YEVFCGQWRESSKVFAFRGDSN-------WLGFSKCSNRDVLGGWSDS------GSIFVADVVA 356 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g~~~-------~~~~~~~~d~~~l~sgs~d------g~I~iWd~~~ 356 (369)
+.|.+||. .++.+..+..+.. ..++...+|+..|+.++.+ +.|+..+...
T Consensus 254 ~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 254 GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred CEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEeccc
Confidence 99999998 4566666654321 1344445677666655544 3555555543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-08 Score=89.85 Aligned_cols=236 Identities=8% Similarity=-0.056 Sum_probs=146.6
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.+...+.+|++++++ .+.++....+.|..|+.. +. ...+..... .....++++++++ .++++. .
T Consensus 12 ~~~~~~~~i~~d~~g----~l~v~~~~~~~v~~~d~~-~~----~~~~~~~~~-----~~~~~~i~~~~~g-~l~v~~-~ 75 (299)
T 2z2n_A 12 NQDTGPYGITVSDKG----KVWITQHKANMISCINLD-GK----ITEYPLPTP-----DAKVMCLTISSDG-EVWFTE-N 75 (299)
T ss_dssp SSSCCEEEEEECTTS----CEEEEETTTTEEEEECTT-CC----EEEEECSST-----TCCEEEEEECTTS-CEEEEE-T
T ss_pred CcCCCccceEECCCC----CEEEEecCCCcEEEEcCC-CC----eEEecCCcc-----cCceeeEEECCCC-CEEEeC-C
Confidence 345678999998874 455554446789888866 21 111111111 1235589999854 455554 5
Q ss_pred ccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee-eeccCCCcEEEEE
Q 017601 170 FSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR-ICGSVGDILYAVC 248 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~-~~~~~~~~v~~v~ 248 (369)
.++.|..||.......+...........+. +++++..+++...++.|..||. ++ +.... .... ...+++++
T Consensus 76 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~---~~~~g~l~v~~~~~~~i~~~d~-~g---~~~~~~~~~~-~~~~~~i~ 147 (299)
T 2z2n_A 76 AANKIGRITKKGIIKEYTLPNPDSAPYGIT---EGPNGDIWFTEMNGNRIGRITD-DG---KIREYELPNK-GSYPSFIT 147 (299)
T ss_dssp TTTEEEEECTTSCEEEEECSSTTCCEEEEE---ECTTSCEEEEETTTTEEEEECT-TC---CEEEEECSST-TCCEEEEE
T ss_pred CCCeEEEECCCCcEEEEeCCCcCCCceeeE---ECCCCCEEEEecCCceEEEECC-CC---CEEEecCCCC-CCCCceEE
Confidence 678899998764443332111111222222 2244544555556789999998 44 22221 1112 36789999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCceeeee-ccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc--
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWSALSR-WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG-- 324 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~~~~~-~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g-- 324 (369)
++++| .+++...++.|..||. +++.... +..+ ...+.++++.+ +++++++...++.|.+||. +++... +..
T Consensus 148 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~ 222 (299)
T 2z2n_A 148 LGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP-ASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITE-FKIPT 222 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEE-EECSS
T ss_pred EcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC-CCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEE-EECCC
Confidence 99999 6566666789999998 6554432 3344 45688999999 8998777777889999999 655332 321
Q ss_pred C-CCeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 325 D-SNWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 325 ~-~~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
+ ....++...++|.++++...++.|.+||.
T Consensus 223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 1 22234445568887777767899999998
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-10 Score=104.99 Aligned_cols=236 Identities=15% Similarity=0.091 Sum_probs=133.6
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCee-E-------------------EE
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWS-G-------------------LC 155 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------l~ 155 (369)
..+.|+||+ ..|+....++.+++|++.++.. ...... + .+|. . ++
T Consensus 84 ~~~~~spdg----~~l~~~~~~~~l~~~d~~~~~~---~~~~~~--~------~~~~~~g~~l~~~~~~~~~~~~~~~~~ 148 (396)
T 3c5m_A 84 FGGFISTDE----RAFFYVKNELNLMKVDLETLEE---QVIYTV--D------EEWKGYGTWVANSDCTKLVGIEILKRD 148 (396)
T ss_dssp TTCEECTTS----SEEEEEETTTEEEEEETTTCCE---EEEEEC--C------TTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred ccceECCCC----CEEEEEEcCCcEEEEECCCCCc---EEEEec--c------cccCCCCCEEEeccCCccccccccccc
Confidence 347899984 5777777778899999875421 000110 0 0121 1 35
Q ss_pred ECCCCceeEEEEe----cccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCC-CCCcEEEEEcC------CeEEEEe
Q 017601 156 FSPSQWSMAAVAR----SFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVN-GGPNMLAVTEG------CQLTIWD 223 (369)
Q Consensus 156 ~~p~~~~~~a~~~----s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~~lla~s~d------~~v~iwD 223 (369)
|+|++. .++... ..+..|.+||... ....+. .+...+.... ++| ++..|+.++.+ ..|.+||
T Consensus 149 ~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~---~sp~dg~~l~~~~~~~~~~~~~~l~~~d 222 (396)
T 3c5m_A 149 WQPLTS-WEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPI---YRPFDDSTVGFCHEGPHDLVDARMWLVN 222 (396)
T ss_dssp CCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEE---EETTEEEEEEEEECSCSSSCSCCCEEEE
T ss_pred cCCCCc-ceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccce---ECCCCCCEEEEEecCCCCCCCceEEEEE
Confidence 677443 333321 3567899999753 222222 1222222222 224 45567666643 4688888
Q ss_pred CCcccCCceeeeeeccC-CCcEEEEEECCCC-cEEEEeCC-----CcEEEEeCCCceeeeeccccccCceEEEEEcCCCC
Q 017601 224 LRMKENGGCLHRICGSV-GDILYAVCSSSTG-NIAVAGAD-----RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDS 296 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g-~lasgs~D-----~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~ 296 (369)
+..+ . ...+..+. ...+..++|+|+| .|+.++.+ +.|.+||+.+++...... . . ... +.|+|.|+
T Consensus 223 ~~~~---~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~-~-~~~-~~~s~~dg 294 (396)
T 3c5m_A 223 EDGS---N-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-M-P-PCS-HLMSNFDG 294 (396)
T ss_dssp TTSC---C-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-C-C-SEE-EEEECSSS
T ss_pred CCCC---c-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-C-C-CCC-CCccCCCC
Confidence 8654 2 22222220 2368889999999 77776544 459999998876533221 1 1 123 88987678
Q ss_pred CEEEEEE----------------CCCeEEEEECcCCceeEEEEcCCC-e-----------eeeeEcCCCCEEEEEeC-CC
Q 017601 297 NYIYVQG----------------VDYEVFCGQWRESSKVFAFRGDSN-W-----------LGFSKCSNRDVLGGWSD-SG 347 (369)
Q Consensus 297 ~~l~s~s----------------~D~~i~vwd~~~~~~~~~~~g~~~-~-----------~~~~~~~d~~~l~sgs~-dg 347 (369)
++++.++ .+..|++||+.+++... +..+.. | ......+||+.|+..+. ++
T Consensus 295 ~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~ 373 (396)
T 3c5m_A 295 SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG 373 (396)
T ss_dssp SEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS
T ss_pred ceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC
Confidence 8888765 34789999998876543 333321 1 12344678988776665 55
Q ss_pred cEEEE--ECCCCcchh
Q 017601 348 SIFVA--DVVAKENEI 361 (369)
Q Consensus 348 ~I~iW--d~~~~~~~~ 361 (369)
...+| ++.+++..+
T Consensus 374 ~~~l~~~~~~~~~~~~ 389 (396)
T 3c5m_A 374 VPAIYIADVPESYKHL 389 (396)
T ss_dssp SCEEEEEECCTTCC--
T ss_pred CceEEEEEEccccccc
Confidence 54444 555655433
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-09 Score=95.84 Aligned_cols=212 Identities=9% Similarity=0.028 Sum_probs=140.1
Q ss_pred ceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCC-cceEEE
Q 017601 108 YMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTL 186 (369)
Q Consensus 108 ~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~ 186 (369)
..++++.+.++.|.+||..++. ..+.+..+.. ....++++.|++ .+++ + .++.|..||.. +.+..+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~-----~~w~~~~~~~----~~~~~~~~~pdG-~ilv-s--~~~~V~~~d~~G~~~W~~ 71 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKE-----IVWEYPLEKG----WECNSVAATKAG-EILF-S--YSKGAKMITRDGRELWNI 71 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTE-----EEEEEECCTT----CCCCEEEECTTS-CEEE-E--CBSEEEEECTTSCEEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCe-----EEEEeCCCcc----CCCcCeEECCCC-CEEE-e--CCCCEEEECCCCCEEEEE
Confidence 3688888899999999986541 1233322210 112368999954 4555 3 46789999974 444444
Q ss_pred EeeeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCceeeeeeccC-----CCcEEEEEECCCC-cEEEEe
Q 017601 187 RTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHRICGSV-----GDILYAVCSSSTG-NIAVAG 259 (369)
Q Consensus 187 ~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~~~~~~-----~~~v~~v~~sp~g-~lasgs 259 (369)
... ....+.... ..+++..+++.+. ++.|..+|. ++ +.+..+.... ......+++.++| ++++..
T Consensus 72 ~~~-~~~~~~~~~---~~~dG~~lv~~~~~~~~v~~vd~-~G---k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 72 AAP-AGCEMQTAR---ILPDGNALVAWCGHPSTILEVNM-KG---EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp ECC-TTCEEEEEE---ECTTSCEEEEEESTTEEEEEECT-TS---CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET
T ss_pred cCC-CCccccccE---ECCCCCEEEEecCCCCEEEEEeC-CC---CEEEEEeccCCCCcccccccCceECCCCCEEEEec
Confidence 331 111222222 2246777777676 777888875 45 5555543210 1234556789999 899999
Q ss_pred CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC----C--e-eeee
Q 017601 260 ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS----N--W-LGFS 332 (369)
Q Consensus 260 ~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~----~--~-~~~~ 332 (369)
.++.|.+||.. ++.+.++... ....++.+.+ +++++++++.+++|..+|..+++.+..+..+. + + .++.
T Consensus 144 ~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~ 219 (276)
T 3no2_A 144 ATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLF 219 (276)
T ss_dssp TTTEEEEECTT-SCEEEEEECS--SCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEE
T ss_pred CCCEEEEECCC-CCEEEEEECC--CCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccce
Confidence 99999999987 9988887754 3466788888 99999998888899999999999988886431 1 1 2222
Q ss_pred EcCCCCEEEEEe
Q 017601 333 KCSNRDVLGGWS 344 (369)
Q Consensus 333 ~~~d~~~l~sgs 344 (369)
..++|.++++.+
T Consensus 220 ~~~~G~i~v~~~ 231 (276)
T 3no2_A 220 PLQNGGLYICNW 231 (276)
T ss_dssp ECTTSCEEEEEE
T ss_pred EcCCCCEEEEec
Confidence 345888887774
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-08 Score=87.33 Aligned_cols=236 Identities=6% Similarity=-0.061 Sum_probs=141.3
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
...+.+|++++++ .+.++....+.|+.|+.+.. ...+.+.. ......++++.|+ +.++++. ..+
T Consensus 56 ~~~~~~i~~~~~g----~l~v~~~~~~~i~~~~~~g~-----~~~~~~~~-----~~~~~~~i~~~~~-g~l~v~~-~~~ 119 (299)
T 2z2n_A 56 DAKVMCLTISSDG----EVWFTENAANKIGRITKKGI-----IKEYTLPN-----PDSAPYGITEGPN-GDIWFTE-MNG 119 (299)
T ss_dssp TCCEEEEEECTTS----CEEEEETTTTEEEEECTTSC-----EEEEECSS-----TTCCEEEEEECTT-SCEEEEE-TTT
T ss_pred cCceeeEEECCCC----CEEEeCCCCCeEEEECCCCc-----EEEEeCCC-----cCCCceeeEECCC-CCEEEEe-cCC
Confidence 4678899998873 45555555678888876511 11121110 1123457999984 4455554 567
Q ss_pred ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee-eeccCCCcEEEEEEC
Q 017601 172 KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR-ICGSVGDILYAVCSS 250 (369)
Q Consensus 172 ~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~-~~~~~~~~v~~v~~s 250 (369)
+.|..||.......+...........+. +++++..+++...++.|..||. ++ +.... +... ...+.+++++
T Consensus 120 ~~i~~~d~~g~~~~~~~~~~~~~~~~i~---~~~~g~l~v~~~~~~~i~~~~~-~g---~~~~~~~~~~-~~~~~~i~~~ 191 (299)
T 2z2n_A 120 NRIGRITDDGKIREYELPNKGSYPSFIT---LGSDNALWFTENQNNAIGRITE-SG---DITEFKIPTP-ASGPVGITKG 191 (299)
T ss_dssp TEEEEECTTCCEEEEECSSTTCCEEEEE---ECTTSCEEEEETTTTEEEEECT-TC---CEEEEECSST-TCCEEEEEEC
T ss_pred ceEEEECCCCCEEEecCCCCCCCCceEE---EcCCCCEEEEeCCCCEEEEEcC-CC---cEEEeeCCCC-CCcceeEEEC
Confidence 8899999754443332211111222222 2244544444445789999998 54 33221 2222 3568899999
Q ss_pred CCC-cEEEEeCCCcEEEEeCCCceeee-eccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE--cC-
Q 017601 251 STG-NIAVAGADRTVTIYDPRRWSALS-RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR--GD- 325 (369)
Q Consensus 251 p~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~--g~- 325 (369)
++| ++++...++.|.+||. +++... .+..+ ...+.++++++ +++++++...++.|..||. +++ ...+. ++
T Consensus 192 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~ 266 (299)
T 2z2n_A 192 NDDALWFVEIIGNKIGRITT-SGEITEFKIPTP-NARPHAITAGA-GIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKS 266 (299)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECS-TTCEEEEETTTTEEEEEET-TTE-EEEEECSSSS
T ss_pred CCCCEEEEccCCceEEEECC-CCcEEEEECCCC-CCCceeEEECC-CCCEEEeccCCceEEEECC-CCc-eEEEeCCCCC
Confidence 999 5555556889999998 655432 23334 56789999999 8987777667899999998 343 33332 21
Q ss_pred CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 326 SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 326 ~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
....++.. +++.++++.+ .+.|..++.++++
T Consensus 267 ~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 267 AEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp CCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred CccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 12234455 6777777665 5677777776553
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.6e-09 Score=95.82 Aligned_cols=221 Identities=11% Similarity=0.037 Sum_probs=128.2
Q ss_pred ceeeEEEEeecCCCCceEEEEEec-----CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDS-----YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~-----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..+..++||||+ ..|+.... ...|++|++..+. ...+... .. +.+++|+|++. .|+.+
T Consensus 59 ~~~~~~~~SpDg----~~la~~~~~~~~~~~~l~~~~~~~g~------~~~l~~~-----~~-~~~~~wspdg~-~l~~~ 121 (347)
T 2gop_A 59 ENATMPRISPDG----KKIAFMRANEEKKVSEIWVADLETLS------SKKILEA-----KN-IRSLEWNEDSR-KLLIV 121 (347)
T ss_dssp ESCEEEEECTTS----SEEEEEEEETTTTEEEEEEEETTTTE------EEEEEEE-----SE-EEEEEECTTSS-EEEEE
T ss_pred ccCCCeEECCCC----CEEEEEEeccCCCcceEEEEECCCCc------eEEEEcC-----CC-ccceeECCCCC-EEEEE
Confidence 567889999985 44544432 2247888776431 1111111 01 45799999655 45554
Q ss_pred ecc--------------------------cceEEEEeCCc-ce-EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcC---
Q 017601 168 RSF--------------------------SKSIDVYDQDI-HL-RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEG--- 216 (369)
Q Consensus 168 ~s~--------------------------d~~i~lwd~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d--- 216 (369)
+.. ...|.+||... .. +.+.. .....+.+. |++ .++++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~~~~s------pdg-~~~~~~~~~~~ 193 (347)
T 2gop_A 122 GFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-PRFSSGIWH------RDK-IVVNVPHREII 193 (347)
T ss_dssp EECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-ETTCEEEEE------TTE-EEEEEECCCSS
T ss_pred EccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-CCcccccCC------CCe-EEEEEeccccc
Confidence 222 35788898753 22 34433 222233332 455 44444433
Q ss_pred ---C-eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC--------CcEEEEeCCCceeeeecccccc
Q 017601 217 ---C-QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD--------RTVTIYDPRRWSALSRWVHCSK 283 (369)
Q Consensus 217 ---~-~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D--------~~v~vwD~~~~~~~~~~~~h~~ 283 (369)
. ...||.+.++ ....+..+ ..+.++ +|+| .|+.++.+ ..|.+|| +++......+| .
T Consensus 194 ~~~~~~~~l~~~d~~----~~~~l~~~--~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~-~ 262 (347)
T 2gop_A 194 PQYFKFWDIYIWEDG----KEEKMFEK--VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV-D 262 (347)
T ss_dssp CCSSCCEEEEEEETT----EEEEEEEE--ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC-C
T ss_pred ccccccccEEEeCCC----ceEEeccC--cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC-C
Confidence 2 4455544433 33334332 334444 9999 88777654 3688888 55554445566 7
Q ss_pred CceEE-EEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcE-EEEECC
Q 017601 284 YEITG-LSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSI-FVADVV 355 (369)
Q Consensus 284 ~~v~~-l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I-~iWd~~ 355 (369)
..+.. +.|+ |+ ++++++.|+.+++| +.+++....+.+......+...+ .++++++.++.. .+|.+.
T Consensus 263 ~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 263 RGVGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp SEEEEEEEET--TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cccCCccEEc--Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 78886 8998 67 88999999999999 88665544444332222333344 788888877765 777665
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-09 Score=101.47 Aligned_cols=205 Identities=6% Similarity=-0.080 Sum_probs=128.8
Q ss_pred ceeeEEEEeecCCCCceEEEEEe--cCCcEEEEEecCCCCCCcccccc-ccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 93 SEVQSIALAETDSSGYMVLGSVD--SYGHLIVSKLDTSGKDVDRLTYS-VLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d--~~g~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.....++|+||+ ..|+... ..+.|.+||+.+... ... +.. ++..++.+.|.+...+++. +
T Consensus 108 ~~p~~i~~spdg----~~l~v~n~~~~~~v~v~d~~~~~~-----~~~~i~~-------~~~~~v~~~p~~~~~~~~~-~ 170 (361)
T 2oiz_A 108 NYDGLFRQTTDG----KFIVLQNASPATSIGIVDVAKGDY-----VEDVTAA-------AGCWSVIPQPNRPRSFMTI-C 170 (361)
T ss_dssp CCGGGEEECTTS----SEEEEEEESSSEEEEEEETTTTEE-----EEEEGGG-------TTEEEEEECTTSSSEEEEE-E
T ss_pred CCcceEEECCCC----CEEEEECCCCCCeEEEEECCCCcE-----EEEEecC-------CCcceeEEcCCCCeeEEEE-C
Confidence 456789999985 4554443 357899999875411 111 110 1112467788665566666 7
Q ss_pred ccceEEEEeCCc---ceEEEEe--eeCC-cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC---
Q 017601 170 FSKSIDVYDQDI---HLRTLRT--LWYP-SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV--- 240 (369)
Q Consensus 170 ~d~~i~lwd~~~---~~~~~~~--~~~~-~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~--- 240 (369)
.|+.+.+|+... .....+. ..++ ....++. ..+++..++..+.+++|.++|+.... ...+..+....
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~v~v~d~~~~~-~~~~~~~~~~~~~~ 246 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIA---PALDKDKAHFVSYYGNVYSADFSGDE-VKVDGPWSLLNDED 246 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSC---CEECSSEEEEEBTTSEEEEEECSSSS-CEEEEEEESCCHHH
T ss_pred CCCcEEEEEECCCCcEeeeccccceEcCCCCceEEE---ecccCCEEEEEeCCCeEEEEEecCCC-ceecccccccCccc
Confidence 889998887532 2211110 0011 0000111 12345567777888999999997541 11222221100
Q ss_pred ---C---CcEEEEEECCCC-cEEEEeC-----------CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 241 ---G---DILYAVCSSSTG-NIAVAGA-----------DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 241 ---~---~~v~~v~~sp~g-~lasgs~-----------D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
. .....++|+|++ +++++.. .++|.+||+.+++.+.++..+ . +.+++|+| |+++|+++
T Consensus 247 ~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~--p~~ia~sp-dg~~l~v~ 322 (361)
T 2oiz_A 247 KAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D--ALSMTIDQ-QRNLMLTL 322 (361)
T ss_dssp HHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T--CCEEEEET-TTTEEEEE
T ss_pred cccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C--eeEEEECC-CCCEEEEe
Confidence 0 111126899998 5555432 358999999999999999988 5 99999999 99999988
Q ss_pred ECCCeEEEEECcCC--ceeEEEE
Q 017601 303 GVDYEVFCGQWRES--SKVFAFR 323 (369)
Q Consensus 303 s~D~~i~vwd~~~~--~~~~~~~ 323 (369)
+. ++|.+||..++ +.+..+.
T Consensus 323 n~-~~v~v~D~~t~~l~~~~~i~ 344 (361)
T 2oiz_A 323 DG-GNVNVYDISQPEPKLLRTIE 344 (361)
T ss_dssp CS-SCEEEEECSSSSCEEEEEET
T ss_pred CC-CeEEEEECCCCcceeeEEec
Confidence 86 99999999999 8888873
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-09 Score=97.66 Aligned_cols=188 Identities=12% Similarity=-0.017 Sum_probs=119.2
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
+++|+|++..+++++ ..++.|..||.....+.+.. ....+..+. +++++..+++...++.|.+||.+++ +.
T Consensus 32 g~~~d~~g~~l~~~~-~~~~~i~~~~~~~~~~~~~~--~~~~~~~l~---~~~dg~l~v~~~~~~~i~~~d~~~g---~~ 102 (296)
T 3e5z_A 32 GPVYVPARSAVIFSD-VRQNRTWAWSDDGQLSPEMH--PSHHQNGHC---LNKQGHLIACSHGLRRLERQREPGG---EW 102 (296)
T ss_dssp EEEEEGGGTEEEEEE-GGGTEEEEEETTSCEEEEES--SCSSEEEEE---ECTTCCEEEEETTTTEEEEECSTTC---CE
T ss_pred CCeEeCCCCEEEEEe-CCCCEEEEEECCCCeEEEEC--CCCCcceee---ECCCCcEEEEecCCCeEEEEcCCCC---cE
Confidence 799999665567776 78899999998654433322 222222222 2345544444445689999999776 33
Q ss_pred eeeeec---cCCCcEEEEEECCCC-cEEE----Ee-------------CCCcEEEEeCCCceeeeeccccccCceEEEEE
Q 017601 233 LHRICG---SVGDILYAVCSSSTG-NIAV----AG-------------ADRTVTIYDPRRWSALSRWVHCSKYEITGLSF 291 (369)
Q Consensus 233 ~~~~~~---~~~~~v~~v~~sp~g-~las----gs-------------~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~ 291 (369)
...... .....++.++++|+| ++++ |. ..+.|..+|.. ++ +..+..+ ......++|
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~-~~~~~gi~~ 179 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRD-RVKPNGLAF 179 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECC-CSSEEEEEE
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecC-CCCCccEEE
Confidence 222111 102356789999999 6665 32 13456666654 33 3444555 567899999
Q ss_pred cCCCCCEEEEEECCCeEEEEECc-CCce---eEEEEcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 292 SSIDSNYIYVQGVDYEVFCGQWR-ESSK---VFAFRGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 292 sp~d~~~l~s~s~D~~i~vwd~~-~~~~---~~~~~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+| +++.+++.+.++.|++||+. ++.. ...+..+. ...++...++|.++++. ++.|++||..
T Consensus 180 s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 180 LP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp CT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 99 99998777788999999997 4444 33442111 11345556688877766 8899999986
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-08 Score=98.55 Aligned_cols=228 Identities=10% Similarity=-0.044 Sum_probs=147.2
Q ss_pred ceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCC----cce
Q 017601 108 YMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD----IHL 183 (369)
Q Consensus 108 ~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~----~~~ 183 (369)
..++++...++.|.++|..+... ...+.. +. ...+++|+|++. ++.++ +.|+.|.+||.. +.+
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v-----~~~i~~-----g~-~p~~v~~SpDGr-~lyv~-~~dg~V~viD~~~~t~~~v 233 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEI-----KTVLDT-----GY-AVHISRLSASGR-YLFVI-GRDGKVNMIDLWMKEPTTV 233 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCE-----EEEEEC-----SS-CEEEEEECTTSC-EEEEE-ETTSEEEEEETTSSSCCEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeE-----EEEEeC-----CC-CccceEECCCCC-EEEEE-cCCCeEEEEECCCCCCcEe
Confidence 35666777789999999875511 111110 01 122799999554 55566 678999999984 233
Q ss_pred EEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccC----------CCcEEEEEECCC
Q 017601 184 RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSV----------GDILYAVCSSST 252 (369)
Q Consensus 184 ~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~----------~~~v~~v~~sp~ 252 (369)
..+.....+..+.+.... .||+.+++++. .+++|.++|..+. +.++++.... ...+.++.++++
T Consensus 234 ~~i~~G~~P~~ia~s~~~--~pDGk~l~v~n~~~~~v~ViD~~t~---~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~ 308 (567)
T 1qks_A 234 AEIKIGSEARSIETSKME--GWEDKYAIAGAYWPPQYVIMDGETL---EPKKIQSTRGMTYDEQEYHPEPRVAAILASHY 308 (567)
T ss_dssp EEEECCSEEEEEEECCST--TCTTTEEEEEEEETTEEEEEETTTC---CEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred EEEecCCCCceeEEcccc--CCCCCEEEEEEccCCeEEEEECCCC---cEEEEEeccccccccccccCCCceEEEEEcCC
Confidence 334333334444443100 03566666655 4799999999887 6766654210 126788999998
Q ss_pred C--cEEEEeCCCcEEEEeCCCceee--eeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCceeEEEEc---
Q 017601 253 G--NIAVAGADRTVTIYDPRRWSAL--SRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESSKVFAFRG--- 324 (369)
Q Consensus 253 g--~lasgs~D~~v~vwD~~~~~~~--~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~~~~~~~g--- 324 (369)
+ .++.-..+|.|.++|....+.+ ..+ .. ......+.|+| ++++++++. .++.|.++|+.+++....+.-
T Consensus 309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~-~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 309 RPEFIVNVKETGKILLVDYTDLNNLKTTEI-SA-ERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp SSEEEEEETTTTEEEEEETTCSSEEEEEEE-EC-CSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred CCEEEEEecCCCeEEEEecCCCccceeeee-ec-cccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 8 6666677899999998764322 222 22 34567889999 999987765 578999999999988777653
Q ss_pred --CC-CeeeeeEcCC-CCEEEEEe-CCCcEEEEECCCC
Q 017601 325 --DS-NWLGFSKCSN-RDVLGGWS-DSGSIFVADVVAK 357 (369)
Q Consensus 325 --~~-~~~~~~~~~d-~~~l~sgs-~dg~I~iWd~~~~ 357 (369)
|. +...+ ..++ +.+.++.. .++.|.++|..++
T Consensus 386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 21 11222 2444 45555554 4689999999873
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.3e-09 Score=95.06 Aligned_cols=186 Identities=11% Similarity=-0.012 Sum_probs=130.2
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKEN 229 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~ 229 (369)
++++. +..++++. ..++.|.+||.. +.+..+.....+..+.+.. ++ .+..+. .++.|.+||..++
T Consensus 48 ~i~~~--~~~lyv~~-~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~------~g-~lyv~~~~~~~v~~iD~~t~-- 115 (328)
T 3dsm_A 48 SMVIR--DGIGWIVV-NNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS------DE-KAYVTQIWDYRIFIINPKTY-- 115 (328)
T ss_dssp EEEEE--TTEEEEEE-GGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE------TT-EEEEEEBSCSEEEEEETTTT--
T ss_pred EEEEE--CCEEEEEE-cCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC------CC-eEEEEECCCCeEEEEECCCC--
Confidence 57774 34555655 678999999985 4445554334455555533 34 555544 6899999999987
Q ss_pred CceeeeeeccCCC------cEEEEEECCCCcEEEEe--CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEE
Q 017601 230 GGCLHRICGSVGD------ILYAVCSSSTGNIAVAG--ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 230 ~~~~~~~~~~~~~------~v~~v~~sp~g~lasgs--~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s 301 (369)
+....+... . ....+++ .++.|.++. .+++|.+||+++++.+.++... .....+.++| +++++++
T Consensus 116 -~~~~~i~~g--~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~-dG~l~v~ 188 (328)
T 3dsm_A 116 -EITGYIECP--DMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDK-YNKMWTI 188 (328)
T ss_dssp -EEEEEEECT--TCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECT-TSEEEEE
T ss_pred -eEEEEEEcC--CccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcC-CCCEEEE
Confidence 666666543 3 5667777 445444444 4899999999999888777643 3457899999 9988777
Q ss_pred EECC----------CeEEEEECcCCceeEEEEcC--CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 302 QGVD----------YEVFCGQWRESSKVFAFRGD--SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 302 ~s~D----------~~i~vwd~~~~~~~~~~~g~--~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+..+ +.|.++|..+++....+.-. ....++...++++.|+.... .|++||.++++.
T Consensus 189 ~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 189 TDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp BCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred ECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 6655 79999999998877776521 11156666778888887765 999999988763
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.5e-10 Score=105.12 Aligned_cols=182 Identities=13% Similarity=0.144 Sum_probs=117.5
Q ss_pred eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccC-CCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 94 EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLP-QDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
.++.|++++.. .+++++..+ .+.+|++....+-+......+.+ ....+. ++..++| ++..++++ .++
T Consensus 39 ~~nlLais~~~----gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp--~V~~l~f---d~~~L~v~--~~~ 106 (388)
T 1xip_A 39 SLQNLDISNSK----SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIP--DVIFVCF---HGDQVLVS--TRN 106 (388)
T ss_dssp CCBCEEEETTT----TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECT--TEEEEEE---ETTEEEEE--ESS
T ss_pred cccEEEEcCCC----CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCC--CeeEEEE---CCCEEEEE--cCC
Confidence 68999999973 567777766 46668875321000000000111 000111 2678999 44566766 679
Q ss_pred eEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCC
Q 017601 173 SIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSST 252 (369)
Q Consensus 173 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 252 (369)
.|++||+......-....+...+..+...+ + .+++++.||+|.+||++++ .... .. ..|.|+||||+
T Consensus 107 ~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~--p---~~av~~~dG~L~v~dl~~~---~~~~---~~--~~Vs~v~WSpk 173 (388)
T 1xip_A 107 ALYSLDLEELSEFRTVTSFEKPVFQLKNVN--N---TLVILNSVNDLSALDLRTK---STKQ---LA--QNVTSFDVTNS 173 (388)
T ss_dssp EEEEEESSSTTCEEEEEECSSCEEEEEECS--S---EEEEEETTSEEEEEETTTC---CEEE---EE--ESEEEEEECSS
T ss_pred cEEEEEchhhhccCccceeecceeeEEecC--C---CEEEEECCCCEEEEEccCC---cccc---cc--CCceEEEEcCC
Confidence 999999864332111112222333333221 2 4888999999999999977 4432 22 67999999999
Q ss_pred CcEEEEeCCCcEEEEeCCCcee--eeec------c---ccccCceEEEEEcCCCCCEEEEEE
Q 017601 253 GNIAVAGADRTVTIYDPRRWSA--LSRW------V---HCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 253 g~lasgs~D~~v~vwD~~~~~~--~~~~------~---~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
| ++.|..||++++|+...++. ..++ . +| ...|.+|.|.+ ++.++++-.
T Consensus 174 G-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~-~~~flv~y~ 232 (388)
T 1xip_A 174 Q-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILS-PQDFLAVFG 232 (388)
T ss_dssp E-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESS-SSEEEEEEE
T ss_pred c-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEec-CCeEEEEEc
Confidence 9 77899999999999887664 4455 2 36 78899999999 888888743
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-09 Score=109.87 Aligned_cols=243 Identities=8% Similarity=0.020 Sum_probs=136.7
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCC----cEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYG----HLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+|...+..++||||+ ..++.+.+..| .|++||+.++.. +.. .... ..+.+++|+|+ . .|+
T Consensus 160 ~~~~~~~~~~~SPDG---~~la~~~~~~G~e~~~i~v~dl~tg~~-~~~---~~~~-------~~~~~~~wspD-~-~l~ 223 (741)
T 1yr2_A 160 DGATALDAWAASDDG---RLLAYSVQDGGSDWRTVKFVGVADGKP-LAD---ELKW-------VKFSGLAWLGN-D-ALL 223 (741)
T ss_dssp ---EEEEEEEECTTS---SEEEEEEEETTCSEEEEEEEETTTCCE-EEE---EEEE-------EESCCCEESTT-S-EEE
T ss_pred CCCEEEEeEEECCCC---CEEEEEEcCCCCceEEEEEEECCCCCC-CCc---cCCC-------ceeccEEEECC-C-EEE
Confidence 345678899999985 23334444444 499999986521 110 1100 00125899996 4 555
Q ss_pred EEecccc--------------eEEEEeCCcce---EEEEee-eCCcceeeeccCCCCCCCCcEEEEEcC-----CeEEEE
Q 017601 166 VARSFSK--------------SIDVYDQDIHL---RTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEG-----CQLTIW 222 (369)
Q Consensus 166 ~~~s~d~--------------~i~lwd~~~~~---~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d-----~~v~iw 222 (369)
.+ +.+. .|.+|+.+... ..+... .++..+.... +++|+..|+..+.+ ..|.+|
T Consensus 224 ~~-~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~---~SpDG~~l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 224 YS-RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGAS---VSSDGRWVVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp EE-ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE---ECTTSCEEEEEEECTTCSCCEEEEE
T ss_pred EE-EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEE---ECCCCCEEEEEEEccCCCcceEEEE
Confidence 55 3433 38888875322 111111 1111122222 34677777776654 389999
Q ss_pred eCCcccCCce-eeeeeccCCCcEEEEEECCCC-cEEEEeCC----CcEEEEeCCCc--eeeeeccccccCceEEEEEcCC
Q 017601 223 DLRMKENGGC-LHRICGSVGDILYAVCSSSTG-NIAVAGAD----RTVTIYDPRRW--SALSRWVHCSKYEITGLSFSSI 294 (369)
Q Consensus 223 D~~~~~~~~~-~~~~~~~~~~~v~~v~~sp~g-~lasgs~D----~~v~vwD~~~~--~~~~~~~~h~~~~v~~l~~sp~ 294 (369)
|+.++. .. ...+..+ ...+.... +|+| .|+..+.+ +.|.+||+.++ .....+..+ ...+.++.|+
T Consensus 300 d~~~~~--~~~~~~l~~~-~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~~~-- 372 (741)
T 1yr2_A 300 RVTNGK--IGPVTALIPD-LKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVGIA-- 372 (741)
T ss_dssp EEETTE--ECCCEEEECS-SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEEEE--
T ss_pred ECCCCC--CcccEEecCC-CCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEEEE--
Confidence 997651 12 4444433 23344443 4888 77766653 45999999874 233333444 5566677776
Q ss_pred CCCEEEEEECCCeEEEEECc-CCceeEEEEcC-CC-eeeeeEcCCCCEEE-EEe---CCCcEEEEECCCCcc
Q 017601 295 DSNYIYVQGVDYEVFCGQWR-ESSKVFAFRGD-SN-WLGFSKCSNRDVLG-GWS---DSGSIFVADVVAKEN 359 (369)
Q Consensus 295 d~~~l~s~s~D~~i~vwd~~-~~~~~~~~~g~-~~-~~~~~~~~d~~~l~-sgs---~dg~I~iWd~~~~~~ 359 (369)
++.++++...|+..+||.+. .+.....+..+ .. ...+...++++.|+ +.+ ..++|++||+.+++.
T Consensus 373 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 45678888889988887665 35555555432 21 12233345666444 333 358999999988763
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-09 Score=99.42 Aligned_cols=191 Identities=11% Similarity=-0.015 Sum_probs=119.2
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN 229 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~ 229 (369)
+.+++|++.. ..++.. +.++.++.|.. .....+... ..+..+.+ ++++..+++...++.|.+||..++
T Consensus 8 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~g~l~~~~~~~~~i~~~d~~~~-- 76 (333)
T 2dg1_A 8 LPTLFYSGKS-NSAVPI-ISESELQTITA-EPWLEISKKGLQLEGLNF------DRQGQLFLLDVFEGNIFKINPETK-- 76 (333)
T ss_dssp CCBCCSCGGG-GCSSCC-CCGGGSCEEEC-EEEEEEESSCCCEEEEEE------CTTSCEEEEETTTCEEEEECTTTC--
T ss_pred cceeeecCCc-cceeEE-eecccCccccc-ceeEEEeccCccccCcEE------CCCCCEEEEECCCCEEEEEeCCCC--
Confidence 3468888843 344444 56788888832 222222111 11223333 245554445667899999999876
Q ss_pred CceeeeeeccCCCcEEEEEECCCC-cEEEEeCC----CcEEEEeCCCceeeeecc--ccccCceEEEEEcCCCCCEEEEE
Q 017601 230 GGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD----RTVTIYDPRRWSALSRWV--HCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 230 ~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D----~~v~vwD~~~~~~~~~~~--~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
+........ ...+.+++|+|+| ++++...+ +.|.+||..++.....+. .+ ...+..+.++| +++++++.
T Consensus 77 -~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~i~~d~-~g~l~v~~ 152 (333)
T 2dg1_A 77 -EIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST-AYCIDDMVFDS-KGGFYFTD 152 (333)
T ss_dssp -CEEEEEECS-SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS-CCCEEEEEECT-TSCEEEEE
T ss_pred -cEEEEeeCC-CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCcc-CCcccceEECC-CCCEEEEe
Confidence 443333222 3779999999999 66666655 689999988766543332 23 46789999999 99988876
Q ss_pred EC------CCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEE-EEEeCCCcEEEEECCC
Q 017601 303 GV------DYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVL-GGWSDSGSIFVADVVA 356 (369)
Q Consensus 303 s~------D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l-~sgs~dg~I~iWd~~~ 356 (369)
.. .+.|..+|..+++......+.....++...++++.| ++.+.++.|++||+.+
T Consensus 153 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 153 FRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 54 245666666554443333222222455557788755 5556789999999864
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-08 Score=103.73 Aligned_cols=197 Identities=11% Similarity=-0.024 Sum_probs=122.8
Q ss_pred eeEEEECCCCceeEEEEecccc----eEEEEeCCcce-EEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCe------
Q 017601 151 WSGLCFSPSQWSMAAVARSFSK----SIDVYDQDIHL-RTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQ------ 218 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~----~i~lwd~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~------ 218 (369)
+.+++|||++. .+|.+.+..+ +|++||+.... ....... ....+.| +||+..|+.++.++.
T Consensus 127 ~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~w------spDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 127 LRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW------THDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp EEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEE------CTTSSEEEEEECCCCSSCCSS
T ss_pred EEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEE------EeCCCEEEEEEECCccccccc
Confidence 56799999554 5665523333 89999985322 2211111 1223333 356778888887655
Q ss_pred ----------EEEEeCCcccCCceeeeeecc-CCCcEEEEEECCCC-cEEEEeC-----CCcEEEEeCCC------ce-e
Q 017601 219 ----------LTIWDLRMKENGGCLHRICGS-VGDILYAVCSSSTG-NIAVAGA-----DRTVTIYDPRR------WS-A 274 (369)
Q Consensus 219 ----------v~iwD~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~g-~lasgs~-----D~~v~vwD~~~------~~-~ 274 (369)
|.+|++.++.. .....+... ....+..++||||| +|+..+. +..|.+||+.+ +. .
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~-~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQS-EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGG-GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred cccccCCCCEEEEEECCCCcc-cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence 99999987631 111222221 02457889999999 7766654 57899999976 43 4
Q ss_pred eeeccccccCceEEEEEcCCCCCEEEEEECC----CeEEEEECcCCc--eeEEEEcCCC--ee-eeeEcCCCCEEEEEeC
Q 017601 275 LSRWVHCSKYEITGLSFSSIDSNYIYVQGVD----YEVFCGQWRESS--KVFAFRGDSN--WL-GFSKCSNRDVLGGWSD 345 (369)
Q Consensus 275 ~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D----~~i~vwd~~~~~--~~~~~~g~~~--~~-~~~~~~d~~~l~sgs~ 345 (369)
...+..+ ...+.. .|+| +++.|+..+.+ ..|.+||+.++. ....+..|.. .. .+...+++.++++...
T Consensus 279 ~~~l~~~-~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 279 WVKLIDN-FEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp CEEEECS-SSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred eEEeeCC-CCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence 5666666 555555 5889 88887776653 369999998764 2344444432 11 2333446778889998
Q ss_pred CCc--EEEEECCCCc
Q 017601 346 SGS--IFVADVVAKE 358 (369)
Q Consensus 346 dg~--I~iWd~~~~~ 358 (369)
|+. |++|++.+++
T Consensus 356 ~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 356 DVKNTLQLHDLATGA 370 (710)
T ss_dssp TTEEEEEEEETTTCC
T ss_pred CCEEEEEEEECCCCC
Confidence 984 5667775664
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-09 Score=91.55 Aligned_cols=193 Identities=8% Similarity=-0.007 Sum_probs=122.9
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCCcceEEEEee---eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTL---WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
.++++++++ .+++++...++.|.+||.+......... ..+..+.+. +++. +..+..++.|.+||....
T Consensus 27 ~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~------~~g~-l~v~~~~~~i~~~d~~~~- 97 (270)
T 1rwi_B 27 SGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD------GAGT-VYVTDFNNRVVTLAAGSN- 97 (270)
T ss_dssp EEEEECTTC-CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEEC------TTCC-EEEEETTTEEEEECTTCS-
T ss_pred cceEECCCC-CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEEC------CCCC-EEEEcCCCEEEEEeCCCc-
Confidence 479999955 4555233677899999875432221111 123333332 3454 444444889999998754
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
. ...+.......+..++++|+| .+++...++.|.+||..+.......... ...+.+++++| +++++++...++.
T Consensus 98 --~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~-~g~l~v~~~~~~~ 172 (270)
T 1rwi_B 98 --N-QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDN-SGNVYVTDTDNNR 172 (270)
T ss_dssp --C-CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS-CCSCCCEEECT-TCCEEEEEGGGTE
T ss_pred --e-EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc-CCCceeEEEeC-CCCEEEEECCCCE
Confidence 2 222222212678999999999 6666667889999987654433322233 34678999999 9998887777889
Q ss_pred EEEEECcCCceeEEEEcC-CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 308 VFCGQWRESSKVFAFRGD-SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~-~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|.+||............+ ....++...++|.++++...++.|++|+.....
T Consensus 173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred EEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 999998876543322222 222455556688888888889999999986654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-09 Score=97.44 Aligned_cols=168 Identities=18% Similarity=0.146 Sum_probs=110.9
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCCcce----------EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEE
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL----------RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTI 221 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~i 221 (369)
..+++++.. ++++++ +.+ .+.+|+..... ........+. +..+.+ ++..|+++ .++.|++
T Consensus 41 nlLais~~~-gll~a~-~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-----d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 41 QNLDISNSK-SLFVAA-SGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-----HGDQVLVS-TRNALYS 110 (388)
T ss_dssp BCEEEETTT-TEEEEE-ETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-----ETTEEEEE-ESSEEEE
T ss_pred cEEEEcCCC-CEEEEe-CCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-----CCCEEEEE-cCCcEEE
Confidence 369999954 566666 555 56679753111 1111122333 444443 24455555 8999999
Q ss_pred EeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEE
Q 017601 222 WDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 222 wD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s 301 (369)
||+++.. .......+ ...+.++.+.+. .++++..||+|.+||+.++.... + ...|++++||| +| ++.
T Consensus 111 ~dv~sl~---~~~~~~~~-~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~----~-~~~Vs~v~WSp-kG--~~v 177 (388)
T 1xip_A 111 LDLEELS---EFRTVTSF-EKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ----L-AQNVTSFDVTN-SQ--LAV 177 (388)
T ss_dssp EESSSTT---CEEEEEEC-SSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE----E-EESEEEEEECS-SE--EEE
T ss_pred EEchhhh---ccCcccee-ecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc----c-cCCceEEEEcC-Cc--eEE
Confidence 9998763 22233322 366888777654 38889999999999999876543 4 67899999999 87 788
Q ss_pred EECCCeEEEEECcCCce--eEEE------E---cCC-CeeeeeEcCCCCEEEE
Q 017601 302 QGVDYEVFCGQWRESSK--VFAF------R---GDS-NWLGFSKCSNRDVLGG 342 (369)
Q Consensus 302 ~s~D~~i~vwd~~~~~~--~~~~------~---g~~-~~~~~~~~~d~~~l~s 342 (369)
+..|+++++|+....+. ...+ . +|. ....+..++++.++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999999999888775 5556 2 233 1234555667777765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-07 Score=84.87 Aligned_cols=243 Identities=10% Similarity=-0.051 Sum_probs=142.8
Q ss_pred EEEEeecCCCCceEEEEEe----------cCCcEEEEEecCCCCCCcccccccc-CCCCCCCCCCeeEEEECCCCceeEE
Q 017601 97 SIALAETDSSGYMVLGSVD----------SYGHLIVSKLDTSGKDVDRLTYSVL-PQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 97 ~l~~s~~~~~~~~~las~d----------~~g~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
.++|+||+ ..++... .++.|.++|..+... + ....+. +.....+.. -.+++|+|++..+++
T Consensus 70 ~i~~spDg----~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-~--~~i~~~~~~~~~~g~~-p~~~~~spDG~~l~v 141 (373)
T 2mad_H 70 NPVAAHSG----SEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-I--ADIELPDAPRFDVGPY-SWMNANTPNNADLLF 141 (373)
T ss_pred CeEECCCC----CEEEEEeccccccccCCCCCeEEEEECCCCcE-E--EEEECCCccccccCCC-ccceEECCCCCEEEE
Confidence 78999985 4555443 245688998864311 1 011111 000000000 126899996654444
Q ss_pred EEecccceEEEEeCCcceEEEEe-eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee-----cc
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRT-LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC-----GS 239 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~-----~~ 239 (369)
+....+.+|.++| .... .... ...+.++.+... ....+++.+.|+++.++|. ++ +.+.... ..
T Consensus 142 ~n~~~~~~v~viD-~t~~-~~~~~i~~~~~~~~~~~-----~~~~~~~~~~dg~~~~vd~-~g---~~~~~~~~~~~~~~ 210 (373)
T 2mad_H 142 FQFAAGPAVGLVV-QGGS-SDDQLLSSPTCYHIHPG-----APSTFYLLCAQGGLAKTDH-AG---GAAGAGLVGAMLTA 210 (373)
T ss_pred EecCCCCeEEEEE-CCCC-EEeEEcCCCceEEEEeC-----CCceEEEEcCCCCEEEEEC-CC---cEEEEEeccccccC
Confidence 4412257899999 6432 1222 223333333321 1245667778999999999 76 4442221 11
Q ss_pred CCCcE-EEEEECCCC-cEEEEeCCCcEEEEeCCCce--eeeecccc---------ccCceEEEEEcCCCCCEEEEEEC--
Q 017601 240 VGDIL-YAVCSSSTG-NIAVAGADRTVTIYDPRRWS--ALSRWVHC---------SKYEITGLSFSSIDSNYIYVQGV-- 304 (369)
Q Consensus 240 ~~~~v-~~v~~sp~g-~lasgs~D~~v~vwD~~~~~--~~~~~~~h---------~~~~v~~l~~sp~d~~~l~s~s~-- 304 (369)
..++ ....|.+++ .++..+..+.|.+.|+.... .+..+.-. .......+.|+| +++.++.+..
T Consensus 211 -~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~ 288 (373)
T 2mad_H 211 -AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQ 288 (373)
T ss_pred -CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEEeccC
Confidence 1222 234567776 44444477899999987542 22332210 012244578999 8888777643
Q ss_pred --------CCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCC-EEEEEe-CCCcEEEEECCCCcch
Q 017601 305 --------DYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRD-VLGGWS-DSGSIFVADVVAKENE 360 (369)
Q Consensus 305 --------D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~-~l~sgs-~dg~I~iWd~~~~~~~ 360 (369)
++.|.+.|..+.+.+..+.......++...+||+ +++++. .++.|.+||+++++..
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 3589999999999888885433235677788998 788877 5899999999998753
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.7e-08 Score=95.76 Aligned_cols=186 Identities=9% Similarity=-0.008 Sum_probs=127.3
Q ss_pred eEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCC--cccCCceeeeeec
Q 017601 163 MAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLR--MKENGGCLHRICG 238 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~--~~~~~~~~~~~~~ 238 (369)
+++++-..+++|.++|... .+..+.....+..+. +++|+.++.+++.|+.|.+||+. +. +.+.++..
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~------~SpDGr~lyv~~~dg~V~viD~~~~t~---~~v~~i~~ 238 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISR------LSASGRYLFVIGRDGKVNMIDLWMKEP---TTVAEIKI 238 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEE------ECTTSCEEEEEETTSEEEEEETTSSSC---CEEEEEEC
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceE------ECCCCCEEEEEcCCCeEEEEECCCCCC---cEeEEEec
Confidence 4444438899999999863 344444332333333 34677788888889999999996 55 66777765
Q ss_pred cCCCcEEEEEEC----CCC-cEEEEe-CCCcEEEEeCCCceeeeeccc----------cccCceEEEEEcCCCCCEEEEE
Q 017601 239 SVGDILYAVCSS----STG-NIAVAG-ADRTVTIYDPRRWSALSRWVH----------CSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 239 ~~~~~v~~v~~s----p~g-~lasgs-~D~~v~vwD~~~~~~~~~~~~----------h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
. .....++|+ ||| ++++++ .+++|.|+|..+.+++.++.- |-...+..+.+++..+.++++.
T Consensus 239 G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 239 G--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp C--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred C--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence 4 567899999 699 665554 569999999999888876542 2122688899999334456666
Q ss_pred ECCCeEEEEECcCCce--eEEEEcCCCeeeeeEcCCCCEEEEEe-CCCcEEEEECCCCcc
Q 017601 303 GVDYEVFCGQWRESSK--VFAFRGDSNWLGFSKCSNRDVLGGWS-DSGSIFVADVVAKEN 359 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~--~~~~~g~~~~~~~~~~~d~~~l~sgs-~dg~I~iWd~~~~~~ 359 (369)
..++.|.++|....+. +..+........+...+|+++++.++ .++.|.++|+++++.
T Consensus 317 ~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 317 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 6679999999876432 22222222224455567899876655 679999999998863
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-07 Score=89.50 Aligned_cols=230 Identities=11% Similarity=-0.009 Sum_probs=135.5
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
.....|+|++++ .+.++-...+.|++||...+. . ...... ...+. ++|+|++. .++++ ..++
T Consensus 131 ~~P~~la~d~~g----~lyv~d~~~~~I~~id~~~g~----~-~~~~~~-----~~~~~--ia~~~~g~-~l~~~-d~~~ 192 (409)
T 3hrp_A 131 KYMWGIAAVGNN----TVLAYQRDDPRVRLISVDDNK----V-TTVHPG-----FKGGK--PAVTKDKQ-RVYSI-GWEG 192 (409)
T ss_dssp CCEEEEEECSTT----EEEEEETTTTEEEEEETTTTE----E-EEEEET-----CCBCB--CEECTTSS-EEEEE-BSST
T ss_pred CCceEEEEeCCC----CEEEEecCCCcEEEEECCCCE----E-EEeecc-----CCCCc--eeEecCCC-cEEEE-ecCC
Confidence 356789998873 455554456789998876431 0 111111 11122 89999655 44544 3433
Q ss_pred --eEEEEeCCcc--eEEEE-----eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee-----ec
Q 017601 173 --SIDVYDQDIH--LRTLR-----TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI-----CG 238 (369)
Q Consensus 173 --~i~lwd~~~~--~~~~~-----~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~-----~~ 238 (369)
.|.+||.... .+.+. ....+..+.+ +++++.|..+..+++|..||..++ .. ..+ .+
T Consensus 193 ~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav------~p~~g~lyv~d~~~~I~~~d~~~~---~~-~~~~~~~~~g 262 (409)
T 3hrp_A 193 THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVAL------DETEEWLYFVDSNKNFGRFNVKTQ---EV-TLIKQLELSG 262 (409)
T ss_dssp TCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEE------CTTSSEEEEECTTCEEEEEETTTC---CE-EEEEECCCCS
T ss_pred CceEEEEEcCCCceeEEeeeccchhcCCcEEEEE------eCCCCeEEEEECCCcEEEEECCCC---CE-EEEecccccC
Confidence 7888876422 22221 1112333333 344556666666789999999876 22 222 11
Q ss_pred cCCCc-EEEEEECCC-C-cEEEEeCCCcEEEEeCCCceeeeeccccc--------------cCceEEEEEcCCCCCEEEE
Q 017601 239 SVGDI-LYAVCSSST-G-NIAVAGADRTVTIYDPRRWSALSRWVHCS--------------KYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 239 ~~~~~-v~~v~~sp~-g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~--------------~~~v~~l~~sp~d~~~l~s 301 (369)
..... ...++|+|+ + ++++-..++.|+.||.... +..+.++. -.....++|+| +++++++
T Consensus 263 ~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyva 339 (409)
T 3hrp_A 263 SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIV 339 (409)
T ss_dssp CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEE
T ss_pred CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEE
Confidence 10111 238999995 5 6666677889999997643 33333330 13478999999 9998888
Q ss_pred EE-CCCeEEEEECcCCceeEEEEcCC----------------CeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 302 QG-VDYEVFCGQWRESSKVFAFRGDS----------------NWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 302 ~s-~D~~i~vwd~~~~~~~~~~~g~~----------------~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
-+ .+++|+.||+.++.. ..+.|+. .-.++...+++.++++-..++.|+.+++
T Consensus 340 d~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 340 DGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 77 889999999877654 4444431 1123333446667777777777776654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.3e-07 Score=78.74 Aligned_cols=236 Identities=8% Similarity=-0.079 Sum_probs=143.2
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
....+.+|++++++ .+.++....+.|.+++.. + . ...+.+.. ......++++.+++ .++++. ..
T Consensus 18 ~~~~p~~i~~d~~g----~l~v~~~~~~~v~~~~~~-~-~---~~~~~~~~-----~~~~~~~i~~~~~g-~l~v~~-~~ 81 (300)
T 2qc5_A 18 PDSGPYGITSSEDG----KVWFTQHKANKISSLDQS-G-R---IKEFEVPT-----PDAKVMCLIVSSLG-DIWFTE-NG 81 (300)
T ss_dssp TTCCEEEEEECTTS----CEEEEETTTTEEEEECTT-S-C---EEEEECSS-----TTCCEEEEEECTTS-CEEEEE-TT
T ss_pred CCCCcceeeECCCC----CEEEEcCCCCeEEEECCC-C-c---eEEEECCC-----CCCcceeEEECCCC-CEEEEe-cC
Confidence 34677889998873 455554456788888765 2 1 11111111 11234579999844 455544 56
Q ss_pred cceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceee-eeeccCCCcEEEEEE
Q 017601 171 SKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLH-RICGSVGDILYAVCS 249 (369)
Q Consensus 171 d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~-~~~~~~~~~v~~v~~ 249 (369)
++.|..||.......+...........+. +++++..+++...++.|..||.. + +... .+... ...++++++
T Consensus 82 ~~~v~~~d~~g~~~~~~~~~~~~~~~~i~---~~~~g~l~v~~~~~~~i~~~~~~-g---~~~~~~~~~~-~~~~~~i~~ 153 (300)
T 2qc5_A 82 ANKIGKLSKKGGFTEYPLPQPDSGPYGIT---EGLNGDIWFTQLNGDRIGKLTAD-G---TIYEYDLPNK-GSYPAFITL 153 (300)
T ss_dssp TTEEEEECTTSCEEEEECSSTTCCEEEEE---ECSTTCEEEEETTTTEEEEECTT-S---CEEEEECSST-TCCEEEEEE
T ss_pred CCeEEEECCCCCeEEecCCCCCCCCccce---ECCCCCEEEEccCCCeEEEECCC-C---CEEEccCCCC-CCCceeEEE
Confidence 78899998764443332211111222222 22445455554457899999987 4 3322 12212 367899999
Q ss_pred CCCC-cEEEEeCCCcEEEEeCCCceeee-eccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE-EEc-C
Q 017601 250 SSTG-NIAVAGADRTVTIYDPRRWSALS-RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA-FRG-D 325 (369)
Q Consensus 250 sp~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~-~~g-~ 325 (369)
.++| .+++...++.|..||. +++... .+..+ ...+.++++.+ ++++.++....+.|.+||. +++.... +.. .
T Consensus 154 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~ 229 (300)
T 2qc5_A 154 GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTN-AAAPVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEYDIPTPN 229 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCC-CCCcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEEECCCCC
Confidence 9999 5555556788999998 544433 23334 45689999999 9988877767788999998 4443332 221 1
Q ss_pred CCeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 326 SNWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 326 ~~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
....++...++|.+.++...++.|..||.
T Consensus 230 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 230 ARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp CCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 22234444557887777777899999997
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.9e-08 Score=90.10 Aligned_cols=160 Identities=9% Similarity=0.092 Sum_probs=101.6
Q ss_pred cceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcC---C--eEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 171 SKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEG---C--QLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 171 d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d---~--~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+..|.+||... ..+.+ .....+. ++||+..|+.++.+ + .|.+||+.++ +........ . +
T Consensus 42 ~~~l~~~d~~~~~~~~l---~~~~~~~------~SpDg~~la~~~~~~~~~~~~l~~~~~~~g---~~~~l~~~~--~-~ 106 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI---ENATMPR------ISPDGKKIAFMRANEEKKVSEIWVADLETL---SSKKILEAK--N-I 106 (347)
T ss_dssp EEEEEEEETTTCCEEEE---ESCEEEE------ECTTSSEEEEEEEETTTTEEEEEEEETTTT---EEEEEEEES--E-E
T ss_pred cceEEEEeCCCCceEEc---ccCCCeE------ECCCCCEEEEEEeccCCCcceEEEEECCCC---ceEEEEcCC--C-c
Confidence 67789998753 22332 2222222 34677778877653 3 4778888776 444444444 4 9
Q ss_pred EEEEECCCC-cEEEEeCC---------------------------CcEEEEeCCCceeeeeccccccCceEEEEEcCCCC
Q 017601 245 YAVCSSSTG-NIAVAGAD---------------------------RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDS 296 (369)
Q Consensus 245 ~~v~~sp~g-~lasgs~D---------------------------~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~ 296 (369)
.+++|+|+| .|+.++.+ ..|.+||+.+++.+..+.. . .+..+.|+| |+
T Consensus 107 ~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~sp-dg 182 (347)
T 2gop_A 107 RSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHR-DK 182 (347)
T ss_dssp EEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEET-TE
T ss_pred cceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCC-Ce
Confidence 999999999 77776632 5789999998876455443 2 678999999 99
Q ss_pred CEEEEEECCC-------eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCC--------CcEEEEE
Q 017601 297 NYIYVQGVDY-------EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDS--------GSIFVAD 353 (369)
Q Consensus 297 ~~l~s~s~D~-------~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~d--------g~I~iWd 353 (369)
++++++.+. ...+|.+.+++......+ .....+ ++||+.|+.++.+ ..|++||
T Consensus 183 -~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 183 -IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp -EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred -EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC
Confidence 877776652 345554445444333332 211222 6799988877754 3688888
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-08 Score=103.27 Aligned_cols=192 Identities=11% Similarity=-0.033 Sum_probs=116.9
Q ss_pred eeEEEECCCCceeEEEEe----cccceEEEEeCCcceEE-EEeeeCC--cceeeeccCCCCCCCCcEEEEEcCCe-----
Q 017601 151 WSGLCFSPSQWSMAAVAR----SFSKSIDVYDQDIHLRT-LRTLWYP--SSLNFVQNLSPVNGGPNMLAVTEGCQ----- 218 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~----s~d~~i~lwd~~~~~~~-~~~~~~~--~~v~~~~~~~~~~~~~~lla~s~d~~----- 218 (369)
+.+++|||++. .+|.+. +.+.+|++||+...... ....... ..+. ++||+..|+.++.|..
T Consensus 123 ~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~------wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 123 LGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPK------WTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp EEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCE------ECTTSSEEEEEECCCCTTSCG
T ss_pred EEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceE------EecCCCEEEEEEecCCCCCcc
Confidence 56899999655 555332 33468999998632211 1011111 2222 3457778888887765
Q ss_pred --------EEEEeCCcccCC-ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC----cEEEEeCCCceeeeeccccccC
Q 017601 219 --------LTIWDLRMKENG-GCLHRICGSVGDILYAVCSSSTG-NIAVAGADR----TVTIYDPRRWSALSRWVHCSKY 284 (369)
Q Consensus 219 --------v~iwD~~~~~~~-~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~----~v~vwD~~~~~~~~~~~~h~~~ 284 (369)
|++|++.++... ..+.....+ ...+.+++||||| +|+..+.++ .|.+||..+++ ...+..+ ..
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~-~~ 272 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGD-PTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKG-VG 272 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCC-TTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEEC-SS
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCC-CEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecC-CC
Confidence 999999887311 122222222 2578899999999 777776665 67777665443 4455556 55
Q ss_pred ceEEEEEcCCCCCEEEEEE---CCCeEEEEECcCCce---eEEEEcC-CCe-eeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 285 EITGLSFSSIDSNYIYVQG---VDYEVFCGQWRESSK---VFAFRGD-SNW-LGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s---~D~~i~vwd~~~~~~---~~~~~g~-~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
.+....+ + ++.++++.. .++.|.+||+.++.. ...+..+ ... ..+... ++.++++...|+..++|.+.
T Consensus 273 ~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 273 AKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 6666666 5 556444443 257899999987643 3333333 211 122222 77889999999998888654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-06 Score=78.26 Aligned_cols=232 Identities=6% Similarity=-0.085 Sum_probs=135.1
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
...+.+|++++++ .+.++....+.|+.++.. + . ...+..... .....++++.+++ .++++. ..+
T Consensus 61 ~~~~~~i~~~~~g----~l~v~~~~~~~v~~~d~~-g-~---~~~~~~~~~-----~~~~~~i~~~~~g-~l~v~~-~~~ 124 (300)
T 2qc5_A 61 DAKVMCLIVSSLG----DIWFTENGANKIGKLSKK-G-G---FTEYPLPQP-----DSGPYGITEGLNG-DIWFTQ-LNG 124 (300)
T ss_dssp TCCEEEEEECTTS----CEEEEETTTTEEEEECTT-S-C---EEEEECSST-----TCCEEEEEECSTT-CEEEEE-TTT
T ss_pred CCcceeEEECCCC----CEEEEecCCCeEEEECCC-C-C---eEEecCCCC-----CCCCccceECCCC-CEEEEc-cCC
Confidence 3567889998763 455554446778888765 2 1 111211110 1235589999844 455554 557
Q ss_pred ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec-cCCCcEEEEEEC
Q 017601 172 KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG-SVGDILYAVCSS 250 (369)
Q Consensus 172 ~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~-~~~~~v~~v~~s 250 (369)
+.|..||.......+...........+. +++++..+++...++.|..||. ++ +.. .+.. .....+.+++++
T Consensus 125 ~~i~~~~~~g~~~~~~~~~~~~~~~~i~---~d~~g~l~v~~~~~~~i~~~~~-~g---~~~-~~~~~~~~~~~~~i~~d 196 (300)
T 2qc5_A 125 DRIGKLTADGTIYEYDLPNKGSYPAFIT---LGSDNALWFTENQNNSIGRITN-TG---KLE-EYPLPTNAAAPVGITSG 196 (300)
T ss_dssp TEEEEECTTSCEEEEECSSTTCCEEEEE---ECTTSSEEEEETTTTEEEEECT-TC---CEE-EEECSSTTCCEEEEEEC
T ss_pred CeEEEECCCCCEEEccCCCCCCCceeEE---ECCCCCEEEEecCCCeEEEECC-CC---cEE-EeeCCCCCCCcceEEEC
Confidence 8899998764433332111111122222 2244554444445789999998 44 322 2322 113568999999
Q ss_pred CCC-cEEEEeCCCcEEEEeCCCceeee-eccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc---C
Q 017601 251 STG-NIAVAGADRTVTIYDPRRWSALS-RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG---D 325 (369)
Q Consensus 251 p~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g---~ 325 (369)
++| .+++....+.|.+||. +++... .+..+ ...+.++++.+ ++++.++...++.|..||.. ++.. .+.. .
T Consensus 197 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~ 271 (300)
T 2qc5_A 197 NDGALWFVEIMGNKIGRITT-TGEISEYDIPTP-NARPHAITAGK-NSEIWFTEWGANQIGRITND-NTIQ-EYQLQTEN 271 (300)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEE-EEECCSTT
T ss_pred CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCC-CCCceEEEECC-CCCEEEeccCCCeEEEECCC-CcEE-EEECCccC
Confidence 999 5555555678999998 444333 23344 56789999999 89877777677999999983 4332 3321 1
Q ss_pred CCeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 326 SNWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 326 ~~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
....++...++|.+.++.. . .|..+|.
T Consensus 272 ~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 272 AEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 1123444455777666655 4 6666664
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.99 E-value=3.4e-07 Score=82.47 Aligned_cols=223 Identities=9% Similarity=-0.094 Sum_probs=129.3
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEE
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
.+..|++++ ..++.+....+.|+.|+..++. ...+... ....+++++|++. +++ + . +..|.
T Consensus 16 Egp~w~~~~---~~l~~~d~~~~~i~~~d~~~~~----~~~~~~~--------~~~~~i~~~~dG~-l~v-~-~-~~~l~ 76 (297)
T 3g4e_A 16 ESPVWEEVS---NSLLFVDIPAKKVCRWDSFTKQ----VQRVTMD--------APVSSVALRQSGG-YVA-T-I-GTKFC 76 (297)
T ss_dssp EEEEEETTT---TEEEEEETTTTEEEEEETTTCC----EEEEECS--------SCEEEEEEBTTSS-EEE-E-E-TTEEE
T ss_pred cCCeEECCC---CEEEEEECCCCEEEEEECCCCc----EEEEeCC--------CceEEEEECCCCC-EEE-E-E-CCeEE
Confidence 477888863 3455555567889999876541 1111111 1245899999654 444 4 2 56799
Q ss_pred EEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcC---------CeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 176 VYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEG---------CQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 176 lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d---------~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+||... ..+.+................+++++..+++...+ ..-.||.+.... +.......- ...+
T Consensus 77 ~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~~~~~~--~~pn 152 (297)
T 3g4e_A 77 ALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH--HVKKYFDQV--DISN 152 (297)
T ss_dssp EEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS--CEEEEEEEE--SBEE
T ss_pred EEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC--CEEEEeecc--cccc
Confidence 999753 33333222111111111112234555544433221 234555544321 222222222 5678
Q ss_pred EEEECCCC-cE-EEEeCCCcEEEEeC--CCcee-----eeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 246 AVCSSSTG-NI-AVAGADRTVTIYDP--RRWSA-----LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 246 ~v~~sp~g-~l-asgs~D~~v~vwD~--~~~~~-----~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
.++|+|++ .| ++.+.++.|.+||+ .++.. +..+..+ ......+++.+ +|++.++...++.|.+||..++
T Consensus 153 gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE-EQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG-GCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTC
T ss_pred ceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC-CCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCc
Confidence 99999999 44 56667889999987 44432 2334444 45688999999 9998888888889999999989
Q ss_pred ceeEEEEcCC-CeeeeeEc-CCCCEEEEE
Q 017601 317 SKVFAFRGDS-NWLGFSKC-SNRDVLGGW 343 (369)
Q Consensus 317 ~~~~~~~g~~-~~~~~~~~-~d~~~l~sg 343 (369)
+.+..+..+. ...++... +|++.|+..
T Consensus 231 ~~~~~i~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 231 KRLQTVKLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp CEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred eEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence 8888887653 22233333 455554433
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-08 Score=99.52 Aligned_cols=240 Identities=10% Similarity=0.097 Sum_probs=136.9
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCC----cEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYG----HLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
|...+..++||||+ ..+..+.|..| .|+++|+.++.. +.. .+... ...+++|+ ++..++.+
T Consensus 127 ~~~~l~~~~~SpDg---~~lAy~~~~~G~~~~~i~v~dl~tg~~-~~~---~~~~~-------k~~~~~Ws-Dg~~l~y~ 191 (693)
T 3iuj_A 127 GTTALDQLSFSRDG---RILAYSLSLAGSDWREIHLMDVESKQP-LET---PLKDV-------KFSGISWL-GNEGFFYS 191 (693)
T ss_dssp SCCEEEEEEECTTS---SEEEEEEECSSCCEEEEEEEETTTCSE-EEE---EEEEE-------ESCCCEEE-TTTEEEEE
T ss_pred CcEEEEEEEECCCC---CEEEEEEecCCCceEEEEEEECCCCCC-Ccc---ccCCc-------eeccEEEe-CCCEEEEE
Confidence 66788999999985 34444555544 689999986521 111 11000 01257899 66655444
Q ss_pred Eeccc-------------ceEEEEeCCcce---EEEEeee--CCcceeeeccCCCCCCCCcEEEEEc----CCeEEEEeC
Q 017601 167 ARSFS-------------KSIDVYDQDIHL---RTLRTLW--YPSSLNFVQNLSPVNGGPNMLAVTE----GCQLTIWDL 224 (369)
Q Consensus 167 ~~s~d-------------~~i~lwd~~~~~---~~~~~~~--~~~~v~~~~~~~~~~~~~~lla~s~----d~~v~iwD~ 224 (369)
. .+ ..|.+|+++... ..+.... ++....... +++|+..|+..+. ++.|.+||+
T Consensus 192 ~--~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~---~SpDg~~l~~~~~~~~~~~~i~~~d~ 266 (693)
T 3iuj_A 192 S--YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGAT---VTEDDRFLLISAANSTSGNRLYVKDL 266 (693)
T ss_dssp E--SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEE---ECTTSCEEEEEEESSSSCCEEEEEET
T ss_pred E--ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEE---EcCCCCEEEEEEccCCCCcEEEEEEC
Confidence 3 44 348899876322 1221111 122122222 3466766654432 358999999
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCC---CcEEEEeCCCcee--eeeccccccCceEEEEEcCCCCC
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGAD---RTVTIYDPRRWSA--LSRWVHCSKYEITGLSFSSIDSN 297 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D---~~v~vwD~~~~~~--~~~~~~h~~~~v~~l~~sp~d~~ 297 (369)
.+++ .....+..+ ....... |+++| +++....+ +.|.++|+.++.. ...+..| ...+. .|++ +++
T Consensus 267 ~~~~--~~~~~l~~~-~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~--~~s~-~g~ 338 (693)
T 3iuj_A 267 SQEN--APLLTVQGD-LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-RQQVL--TVHS-GSG 338 (693)
T ss_dssp TSTT--CCCEEEECS-SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-CSSCE--EEEE-ETT
T ss_pred CCCC--CceEEEeCC-CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC-CCCEE--EEEE-ECC
Confidence 8763 244455544 2444444 66666 44454443 5799999988654 3456667 55555 8999 888
Q ss_pred EEEEEECCC---eEEEEECcCCceeEEEE-cCC-CeeeeeEcCCCCEEEEEeCC----CcEEEEECCCCcc
Q 017601 298 YIYVQGVDY---EVFCGQWRESSKVFAFR-GDS-NWLGFSKCSNRDVLGGWSDS----GSIFVADVVAKEN 359 (369)
Q Consensus 298 ~l~s~s~D~---~i~vwd~~~~~~~~~~~-g~~-~~~~~~~~~d~~~l~sgs~d----g~I~iWd~~~~~~ 359 (369)
.|+....++ .|++||+..+. ...+. .+. ....+...++++.|+....+ ++|+.||+.+++.
T Consensus 339 ~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 339 YLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 887776654 78999987543 33332 122 11122223455554444333 8999999987753
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.9e-07 Score=81.69 Aligned_cols=230 Identities=10% Similarity=-0.097 Sum_probs=132.1
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
.......+|++++ ..++.+....+.|+.|+.+.. ...+.. + .....++++++++ .++++. ..+
T Consensus 44 ~~~~egp~~~~~g---~~l~~~d~~~~~i~~~~~~g~-----~~~~~~-~------~~~~~gl~~d~dG-~l~v~~-~~~ 106 (305)
T 3dr2_A 44 ATWSEGPAWWEAQ---RTLVWSDLVGRRVLGWREDGT-----VDVLLD-A------TAFTNGNAVDAQQ-RLVHCE-HGR 106 (305)
T ss_dssp CSSEEEEEEEGGG---TEEEEEETTTTEEEEEETTSC-----EEEEEE-S------CSCEEEEEECTTS-CEEEEE-TTT
T ss_pred CcCccCCeEeCCC---CEEEEEECCCCEEEEEeCCCC-----EEEEeC-C------CCccceeeECCCC-CEEEEE-CCC
Confidence 3445688999974 346666667788999976421 111111 1 1224589999954 455544 556
Q ss_pred ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEE----EEc-------------CCeEEEEeCCcccCCceee
Q 017601 172 KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLA----VTE-------------GCQLTIWDLRMKENGGCLH 234 (369)
Q Consensus 172 ~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla----~s~-------------d~~v~iwD~~~~~~~~~~~ 234 (369)
+.|.+||.+.....+.........+......+++++..+++ +.. .+.|..||..++ +...
T Consensus 107 ~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g---~~~~ 183 (305)
T 3dr2_A 107 RAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS---PLQR 183 (305)
T ss_dssp TEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC---CCEE
T ss_pred CEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC---cEEE
Confidence 78999987644443322111111111111122345554543 221 256777887665 3222
Q ss_pred eeeccCCCcEEEEEECCCC-cEEEEeCC------CcEEEEeCCCceee--eecc-ccccCceEEEEEcCCCCCEEEEEEC
Q 017601 235 RICGSVGDILYAVCSSSTG-NIAVAGAD------RTVTIYDPRRWSAL--SRWV-HCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 235 ~~~~~~~~~v~~v~~sp~g-~lasgs~D------~~v~vwD~~~~~~~--~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
.. .. ...+.++|+|++ .|+.+... +.|.+||+...... ..+. .. ......+++.+ +|++.++. .
T Consensus 184 ~~-~~--~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-~~~pdgi~~d~-~G~lwv~~-~ 257 (305)
T 3dr2_A 184 MA-DL--DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-DGLPDGFCVDR-GGWLWSSS-G 257 (305)
T ss_dssp EE-EE--SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-SSCCCSEEECT-TSCEEECC-S
T ss_pred Ee-cC--CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-CCCCCeEEECC-CCCEEEec-C
Confidence 22 32 567889999999 67776655 78999998754311 1111 12 33456789999 99965554 4
Q ss_pred CCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcE
Q 017601 305 DYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSI 349 (369)
Q Consensus 305 D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I 349 (369)
+ .|.+||. .++.+..+..+....++...++++.|+.++.++..
T Consensus 258 ~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 258 T-GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp S-EEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEE
T ss_pred C-cEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEE
Confidence 4 5999998 46666666544422344444678788877776533
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.93 E-value=3.8e-07 Score=82.10 Aligned_cols=208 Identities=11% Similarity=0.085 Sum_probs=121.1
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
+...+.++++++++ ..+.++ +....|++|+.+ +. .. .+... ...........+++++|++ .++++. ..
T Consensus 69 ~~~~~~~i~~~~~~---g~l~v~-~~~~~l~~~d~~-g~--~~--~~~~~-~~~~~~~~~~~~i~~d~~g-~l~v~~-~~ 136 (314)
T 1pjx_A 69 YGGIPAGCQCDRDA---NQLFVA-DMRLGLLVVQTD-GT--FE--EIAKK-DSEGRRMQGCNDCAFDYEG-NLWITA-PA 136 (314)
T ss_dssp EECCEEEEEECSSS---SEEEEE-ETTTEEEEEETT-SC--EE--ECCSB-CTTSCBCBCCCEEEECTTS-CEEEEE-CB
T ss_pred CCCCCceEEEecCC---CcEEEE-ECCCCEEEEeCC-CC--EE--EEEec-cCCCccccCCcCEEECCCC-CEEEEe-cC
Confidence 45678899998872 133333 333468888876 31 10 11000 0000111124479999954 455544 33
Q ss_pred c---------------ceEEEEeCCcceEEE-EeeeCCcceeeeccCCCCCCCCcEEEE-EcCCeEEEEeCC-cccC--C
Q 017601 171 S---------------KSIDVYDQDIHLRTL-RTLWYPSSLNFVQNLSPVNGGPNMLAV-TEGCQLTIWDLR-MKEN--G 230 (369)
Q Consensus 171 d---------------~~i~lwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~lla~-s~d~~v~iwD~~-~~~~--~ 230 (369)
+ +.|..||.......+ .....+..+.+... .++++..+..+ ..++.|.+||.. ++.. .
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~--~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~ 214 (314)
T 1pjx_A 137 GEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHM--NDGRPYQLIVAETPTKKLWSYDIKGPAKIENK 214 (314)
T ss_dssp CBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEEC--TTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred cccccccccccccCCCCeEEEECCCCCEEEeccCCCCcceEEEecc--cCCCCCEEEEEECCCCeEEEEECCCCCccccc
Confidence 3 567777765333222 22223344444300 01344344444 457899999986 2210 0
Q ss_pred ceeeeeeccCC-CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEE-EEEECCCe
Q 017601 231 GCLHRICGSVG-DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYI-YVQGVDYE 307 (369)
Q Consensus 231 ~~~~~~~~~~~-~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l-~s~s~D~~ 307 (369)
.....+..+ . ..+..++++++| ++++...++.|.+||.++++.+..+..+ ...+.+++|+| +++.| ++...++.
T Consensus 215 ~~~~~~~~~-~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~-dg~~l~v~~~~~~~ 291 (314)
T 1pjx_A 215 KVWGHIPGT-HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKP-QTKTIFVTEHENNA 291 (314)
T ss_dssp EEEEECCCC-SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECT-TSSEEEEEETTTTE
T ss_pred eEEEECCCC-CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECC-CCCEEEEEeCCCCe
Confidence 012222222 1 457889999999 6666667889999999878777777666 67899999999 99855 45556789
Q ss_pred EEEEECcC
Q 017601 308 VFCGQWRE 315 (369)
Q Consensus 308 i~vwd~~~ 315 (369)
|..|++..
T Consensus 292 l~~~~~~~ 299 (314)
T 1pjx_A 292 VWKFEWQR 299 (314)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 99999865
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-10 Score=106.04 Aligned_cols=180 Identities=11% Similarity=0.050 Sum_probs=93.0
Q ss_pred eeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc
Q 017601 162 SMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS 239 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~ 239 (369)
..++++ +.|+.|..||.. +.+..+.. .... ..+...++..+++++.|+.|..||.+++ +.+..+..+
T Consensus 10 ~~v~~g-s~dg~v~a~d~~tG~~~W~~~~-~~~~------s~p~~~~g~~~v~~s~dg~l~a~d~~tG---~~~w~~~~~ 78 (369)
T 2hz6_A 10 TLLFVS-TLDGSLHAVSKRTGSIKWTLKE-DPVL------QVPTHVEEPAFLPDPNDGSLYTLGSKNN---EGLTKLPFT 78 (369)
T ss_dssp TEEEEE-ETTSEEEEEETTTCCEEEEEEC-CCSC------CCC-----CCEEECTTTCCEEEC--------CCSEECSCC
T ss_pred CEEEEE-cCCCEEEEEECCCCCEEEEecC-CCce------ecceEcCCCEEEEeCCCCEEEEEECCCC---ceeeeeecc
Confidence 466676 789999999964 44444433 1111 1222234456666678999999999888 444333221
Q ss_pred CCCcEE-EEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCce
Q 017601 240 VGDILY-AVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSK 318 (369)
Q Consensus 240 ~~~~v~-~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~ 318 (369)
....+. +.++..++.+++|+.|+.|..||.++|+.+.++..+ . ...++| ++..+++++.|+.|+.||.++++.
T Consensus 79 ~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 79 IPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-F----ADSLSP-STSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp HHHHHTTCSCC-----CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred CccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC-C----cccccc-cCCEEEEEecCCEEEEEECCCCCE
Confidence 001111 111123347788888999999999999988777766 3 245678 888999999999999999999887
Q ss_pred eEEEEcCCCeeeeeEcCCC---CEEEEEeCCCcEEEEECCCCcc
Q 017601 319 VFAFRGDSNWLGFSKCSNR---DVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 319 ~~~~~g~~~~~~~~~~~d~---~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+-.+..+. +.......+. ..++.++.||.|+.||.++++.
T Consensus 153 ~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 153 RWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 65554222 0111111121 5677889999999999998864
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-07 Score=85.78 Aligned_cols=192 Identities=9% Similarity=-0.028 Sum_probs=121.7
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCC-cceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCC--eEEEEeCCcc
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGC--QLTIWDLRMK 227 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~--~v~iwD~~~~ 227 (369)
.+++|++++ .++++. ..++.|++||.. ..+..+... ..+. +.+ +++++.|+++..++ .|.+||...+
T Consensus 134 ~~la~d~~g-~lyv~d-~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~------~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 134 WGIAAVGNN-TVLAYQ-RDDPRVRLISVDDNKVTTVHPGFKGGK-PAV------TKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp EEEEECSTT-EEEEEE-TTTTEEEEEETTTTEEEEEEETCCBCB-CEE------CTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred eEEEEeCCC-CEEEEe-cCCCcEEEEECCCCEEEEeeccCCCCc-eeE------ecCCCcEEEEecCCCceEEEEEcCCC
Confidence 379999854 466655 678899999986 344433222 1122 322 34566666666654 7888988765
Q ss_pred cCCceeeee---eccCCCcEEEEEECC-CCcEEEEeCCCcEEEEeCCCceeeee----ccccccCce--EEEEEcCCCCC
Q 017601 228 ENGGCLHRI---CGSVGDILYAVCSSS-TGNIAVAGADRTVTIYDPRRWSALSR----WVHCSKYEI--TGLSFSSIDSN 297 (369)
Q Consensus 228 ~~~~~~~~~---~~~~~~~v~~v~~sp-~g~lasgs~D~~v~vwD~~~~~~~~~----~~~h~~~~v--~~l~~sp~d~~ 297 (369)
.....+ .......+.+++++| ++.|+.+..++.|..||..++..... ..++ ...- ..++|+|.++.
T Consensus 205 ---~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~-~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 205 ---WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS-LGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp ---TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC-CCCSSCCEEEEETTTTE
T ss_pred ---ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC-CCCCccccEEEeCCCCE
Confidence 332333 110136678899999 45555577788999999987653222 2223 2222 39999993355
Q ss_pred EEEEEECCCeEEEEECcCCceeEEEEcCC----------------CeeeeeEcCCCCEEEEEe-CCCcEEEEECCCCc
Q 017601 298 YIYVQGVDYEVFCGQWRESSKVFAFRGDS----------------NWLGFSKCSNRDVLGGWS-DSGSIFVADVVAKE 358 (369)
Q Consensus 298 ~l~s~s~D~~i~vwd~~~~~~~~~~~g~~----------------~~~~~~~~~d~~~l~sgs-~dg~I~iWd~~~~~ 358 (369)
++++-...++|+.||.... ...+.|+. .-.++...++|.++++-+ .++.|+.|++.+++
T Consensus 281 lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 6666667889999997653 33333321 113455566889888888 89999999977664
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-07 Score=94.49 Aligned_cols=192 Identities=8% Similarity=-0.011 Sum_probs=115.8
Q ss_pred eeEEEECCCCceeEEEEeccc----ceEEEEeCCcc-eEEEEeeeC-CcceeeeccCCCCCCCCcEEEEEcCC-------
Q 017601 151 WSGLCFSPSQWSMAAVARSFS----KSIDVYDQDIH-LRTLRTLWY-PSSLNFVQNLSPVNGGPNMLAVTEGC------- 217 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d----~~i~lwd~~~~-~~~~~~~~~-~~~v~~~~~~~~~~~~~~lla~s~d~------- 217 (369)
+.+++|||++. .+|.+.+.. .+|++||+... ......... ...+. ++|| ..|+.++.+.
T Consensus 165 ~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~------wspD-~~l~~~~~~~~~~~~~~ 236 (741)
T 1yr2_A 165 LDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLA------WLGN-DALLYSRFAEPKEGQAF 236 (741)
T ss_dssp EEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCE------ESTT-SEEEEEECCCC------
T ss_pred EEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEE------EECC-CEEEEEEecCccccccc
Confidence 56799999554 555552332 46999998532 211111111 11222 3356 6777777554
Q ss_pred -------eEEEEeCCcccCCceeeeeeccC-CCcEEEEEECCCC-cEEEEeCCC-----cEEEEeCCCc--eeeeecccc
Q 017601 218 -------QLTIWDLRMKENGGCLHRICGSV-GDILYAVCSSSTG-NIAVAGADR-----TVTIYDPRRW--SALSRWVHC 281 (369)
Q Consensus 218 -------~v~iwD~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g-~lasgs~D~-----~v~vwD~~~~--~~~~~~~~h 281 (369)
.|.+|++.++... ....+.... ...+..+.||||| +|+..+.++ .|.+||+.++ ++...+..+
T Consensus 237 ~~~~~~~~v~~~~lgt~~~~-~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 237 QALNYNQTVWLHRLGTPQSA-DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp --CCCCCEEEEEETTSCGGG-CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred ccCCCCCEEEEEECCCCchh-CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence 3899999876311 122222220 1358899999999 777666443 8999999876 325566666
Q ss_pred ccCceEEEEEcCCCCCEEEEEECC----CeEEEEECcCC--ceeEEEEcCCCee-eeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 282 SKYEITGLSFSSIDSNYIYVQGVD----YEVFCGQWRES--SKVFAFRGDSNWL-GFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 282 ~~~~v~~l~~sp~d~~~l~s~s~D----~~i~vwd~~~~--~~~~~~~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
...+.... +| +++.|+..+.+ +.|.+||+.++ .....+.++.... .+. ..++.++++...|+..++|.+
T Consensus 316 -~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~-~~~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 316 -LKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG-IAGNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp -SSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE-EEBTEEEEEEEETTEEEEEEE
T ss_pred -CCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE-EECCEEEEEEEECCEEEEEEE
Confidence 45555553 48 88988887764 45999999874 3344444443211 111 126678899999998887755
Q ss_pred C
Q 017601 355 V 355 (369)
Q Consensus 355 ~ 355 (369)
.
T Consensus 392 ~ 392 (741)
T 1yr2_A 392 D 392 (741)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-07 Score=84.59 Aligned_cols=255 Identities=11% Similarity=0.049 Sum_probs=145.2
Q ss_pred EEEeecCCCCceEEEEE--------ecCCcEEEEEecCCCCCCccccccccC-CCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 98 IALAETDSSGYMVLGSV--------DSYGHLIVSKLDTSGKDVDRLTYSVLP-QDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 98 l~~s~~~~~~~~~las~--------d~~g~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
++++||+ ...+++.. ..++.|.+||..+... + ....+.+ .....+...+ +++|+|++..++++..
T Consensus 83 va~spDG--~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v-~--~~I~v~~g~r~~~g~~P~-~~a~spDGk~lyVan~ 156 (386)
T 3sjl_D 83 PVVADDG--SFIAHASTVFSRIARGERTDYVEVFDPVTLLP-T--ADIELPDAPRFLVGTYPW-MTSLTPDGKTLLFYQF 156 (386)
T ss_dssp EEECTTS--SCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-E--EEEEETTCCCCCBSCCGG-GEEECTTSSEEEEEEC
T ss_pred EEECCCC--CEEEEEcccccccccCCCCCEEEEEECCCCeE-E--EEEECCCccccccCCCCc-eEEEcCCCCEEEEEEc
Confidence 8999985 22333321 2356799999876521 1 1111111 0000011112 5999997665555442
Q ss_pred cccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec---cCCCc
Q 017601 169 SFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG---SVGDI 243 (369)
Q Consensus 169 s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~---~~~~~ 243 (369)
..+++|.++|... .+..+.. +.+..... .....+++.+.||++.+.++.+.. +.+..... ....+
T Consensus 157 ~~~~~VsVID~~t~~vv~tI~v---~g~~~~~P-----~g~~~~~~~~~DG~~~~v~~~~~g--~v~~~~~~~~~~~~~~ 226 (386)
T 3sjl_D 157 SPAPAVGVVDLEGKAFKRMLDV---PDCYHIFP-----TAPDTFFMHCRDGSLAKVAFGTEG--TPEITHTEVFHPEDEF 226 (386)
T ss_dssp SSSCEEEEEETTTTEEEEEEEC---CSEEEEEE-----EETTEEEEEETTSCEEEEECCSSS--CCEEEECCCCSCTTSC
T ss_pred CCCCeEEEEECCCCcEEEEEEC---CCcceeec-----CCCceeEEECCCCCEEEEECCCCC--eEEEeecceecccccc
Confidence 2378999999864 3333322 22211111 123467788899999999997631 22221111 10122
Q ss_pred EE-EEEE-CCCCcEEEEeCCCcEEEEeCCCce--eeeecc---------ccccCceEEEEEcCCCCCEEEEEEC------
Q 017601 244 LY-AVCS-SSTGNIAVAGADRTVTIYDPRRWS--ALSRWV---------HCSKYEITGLSFSSIDSNYIYVQGV------ 304 (369)
Q Consensus 244 v~-~v~~-sp~g~lasgs~D~~v~vwD~~~~~--~~~~~~---------~h~~~~v~~l~~sp~d~~~l~s~s~------ 304 (369)
+. ...| .++|.++-.+.++.|.+.|+.+.. .+..+. +-.......++++| +++.++....
T Consensus 227 ~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 227 LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWR 305 (386)
T ss_dssp BCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTC
T ss_pred ccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccc
Confidence 32 1356 467755556778999999997643 333332 11022344577899 8888777643
Q ss_pred ----CCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCC-EEEEEe-CCCcEEEEECCCCcchh-hhcccCCC
Q 017601 305 ----DYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRD-VLGGWS-DSGSIFVADVVAKENEI-SALKGLVN 369 (369)
Q Consensus 305 ----D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~-~l~sgs-~dg~I~iWd~~~~~~~~-~~l~g~~~ 369 (369)
.++|.+.|+++.+.+..+..-....++...+|++ +|++.. .++.|.++|.++++... -...||+|
T Consensus 306 hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~ 377 (386)
T 3sjl_D 306 HKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGP 377 (386)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSC
T ss_pred cCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCc
Confidence 2589999999999888874322223566677886 666654 58999999999987421 22345554
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.87 E-value=5.9e-07 Score=80.89 Aligned_cols=192 Identities=12% Similarity=0.130 Sum_probs=115.4
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG 231 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~ 231 (369)
+..|+|.+..++.+. ..++.|..||... ....+.. +..+..+. +++++. ++.+. ++.|.+||..++ +
T Consensus 17 gp~w~~~~~~l~~~d-~~~~~i~~~d~~~~~~~~~~~---~~~~~~i~---~~~dG~-l~v~~-~~~l~~~d~~~g---~ 84 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVD-IPAKKVCRWDSFTKQVQRVTM---DAPVSSVA---LRQSGG-YVATI-GTKFCALNWKEQ---S 84 (297)
T ss_dssp EEEEETTTTEEEEEE-TTTTEEEEEETTTCCEEEEEC---SSCEEEEE---EBTTSS-EEEEE-TTEEEEEETTTT---E
T ss_pred CCeEECCCCEEEEEE-CCCCEEEEEECCCCcEEEEeC---CCceEEEE---ECCCCC-EEEEE-CCeEEEEECCCC---c
Confidence 688999766666666 7889999999763 2333222 22232222 124454 55544 678999999876 3
Q ss_pred eeeeeec---cCCCcEEEEEECCCC-cEEEE-eC--------CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCE
Q 017601 232 CLHRICG---SVGDILYAVCSSSTG-NIAVA-GA--------DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNY 298 (369)
Q Consensus 232 ~~~~~~~---~~~~~v~~v~~sp~g-~lasg-s~--------D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~ 298 (369)
....... .....++.++++|+| ++++. .. ...-.||.+.....+..+..+ ....+.++|+| |++.
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~-~~~pngi~~sp-dg~~ 162 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ-VDISNGLDWSL-DHKI 162 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE-ESBEEEEEECT-TSCE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec-cccccceEEcC-CCCE
Confidence 2211111 102458899999999 44433 21 123345544332222233334 45578999999 9987
Q ss_pred EE-EEECCCeEEEEECc--CCce-----eEEEEcC-CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 299 IY-VQGVDYEVFCGQWR--ESSK-----VFAFRGD-SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 299 l~-s~s~D~~i~vwd~~--~~~~-----~~~~~g~-~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|+ +.+.++.|.+||+. ++.. ...+..+ ....++...++|.+.++...++.|.+||.++++
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 64 55567899999984 4432 1122211 111345555689888888888999999998775
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.4e-06 Score=76.26 Aligned_cols=220 Identities=8% Similarity=-0.113 Sum_probs=124.4
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceE
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSI 174 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i 174 (369)
....+|+|++ ..++.+....+.|+.|+..++. ...+.. ...+.+++|+|++ .+++++ . ..|
T Consensus 51 ~egp~~~~~~---~~l~~~d~~~~~i~~~d~~~~~----~~~~~~--------~~~v~~i~~~~dg-~l~v~~--~-~gl 111 (326)
T 2ghs_A 51 GEGPTFDPAS---GTAWWFNILERELHELHLASGR----KTVHAL--------PFMGSALAKISDS-KQLIAS--D-DGL 111 (326)
T ss_dssp EEEEEEETTT---TEEEEEEGGGTEEEEEETTTTE----EEEEEC--------SSCEEEEEEEETT-EEEEEE--T-TEE
T ss_pred CcCCeEeCCC---CEEEEEECCCCEEEEEECCCCc----EEEEEC--------CCcceEEEEeCCC-eEEEEE--C-CCE
Confidence 3567898864 3455555557789999876431 111111 1135578999854 444443 3 348
Q ss_pred EEEeCC-cceEEEEeeeC---CcceeeeccCCCCCCCCcEEEEEc------CCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 175 DVYDQD-IHLRTLRTLWY---PSSLNFVQNLSPVNGGPNMLAVTE------GCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 175 ~lwd~~-~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~lla~s~------d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
.+||.. .....+..... ...++.+. +++++..+++... .+.|..+| ++ +........ ...
T Consensus 112 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~---~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g---~~~~~~~~~--~~~ 181 (326)
T 2ghs_A 112 FLRDTATGVLTLHAELESDLPGNRSNDGR---MHPSGALWIGTMGRKAETGAGSIYHVA--KG---KVTKLFADI--SIP 181 (326)
T ss_dssp EEEETTTCCEEEEECSSTTCTTEEEEEEE---ECTTSCEEEEEEETTCCTTCEEEEEEE--TT---EEEEEEEEE--SSE
T ss_pred EEEECCCCcEEEEeeCCCCCCCCCCCCEE---ECCCCCEEEEeCCCcCCCCceEEEEEe--CC---cEEEeeCCC--ccc
Confidence 899864 23333322111 01222222 3455554444332 13455555 33 322222222 557
Q ss_pred EEEEECCCC-cE-EEEeCCCcEEEEeCC--Cc-ee-----eeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 245 YAVCSSSTG-NI-AVAGADRTVTIYDPR--RW-SA-----LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 245 ~~v~~sp~g-~l-asgs~D~~v~vwD~~--~~-~~-----~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
+.++|+|+| .+ ++.+.++.|.+||+. ++ +. +..+... .....++.+.+ +|++.++...++.|.+||.
T Consensus 182 ~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~-~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~- 258 (326)
T 2ghs_A 182 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDA-EGHIWNARWGEGAVDRYDT- 258 (326)
T ss_dssp EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECT-TSCEEEEEETTTEEEEECT-
T ss_pred CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC-CCCCCeeEECC-CCCEEEEEeCCCEEEEECC-
Confidence 899999999 55 444567899999986 55 32 2233334 45678899999 9998888777889999998
Q ss_pred CCceeEEEEcCCC-eeeeeEc-CCCCEEE-EEeCC
Q 017601 315 ESSKVFAFRGDSN-WLGFSKC-SNRDVLG-GWSDS 346 (369)
Q Consensus 315 ~~~~~~~~~g~~~-~~~~~~~-~d~~~l~-sgs~d 346 (369)
+++.+..+..+.. ..++... +++..|+ +...+
T Consensus 259 ~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 259 DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 5666677765542 1233333 5656554 44443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-07 Score=86.63 Aligned_cols=143 Identities=12% Similarity=-0.071 Sum_probs=103.3
Q ss_pred CCCCcEEEEEc-----CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe----------CCCcEEEEe
Q 017601 205 NGGPNMLAVTE-----GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG----------ADRTVTIYD 268 (369)
Q Consensus 205 ~~~~~lla~s~-----d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs----------~D~~v~vwD 268 (369)
|++..+..... +++|.+.|..+. +.+.++... ..+ . ++++||| ++++++ .+++|.+||
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~---~v~~~I~vG-~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGMIDGG-FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTT---EEEEEEEEC-SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCC---eEEEEEECC-CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 55666665543 679999999998 778877754 244 4 9999999 666654 467899999
Q ss_pred CCCceeeeeccccc------cCceEEEEEcCCCCCEEEEEEC--CCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEE
Q 017601 269 PRRWSALSRWVHCS------KYEITGLSFSSIDSNYIYVQGV--DYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVL 340 (369)
Q Consensus 269 ~~~~~~~~~~~~h~------~~~v~~l~~sp~d~~~l~s~s~--D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l 340 (369)
..+.+.+.++.-.. ...-..++|+| ||++++.+.. ++.|.++|+.+.+.+..+.-.. .........+.+
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--CYHIFPTAPDTF 192 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEETTEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--cceeecCCCcee
Confidence 99999888764210 12456799999 9999888764 6899999999999888885433 111111234566
Q ss_pred EEEeCCCcEEEEECCC
Q 017601 341 GGWSDSGSIFVADVVA 356 (369)
Q Consensus 341 ~sgs~dg~I~iWd~~~ 356 (369)
++.+.||.+.+.++.+
T Consensus 193 ~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEEETTSCEEEEECCS
T ss_pred EEECCCCCEEEEECCC
Confidence 6777788877777765
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.2e-10 Score=103.30 Aligned_cols=142 Identities=11% Similarity=-0.012 Sum_probs=80.5
Q ss_pred CCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccC
Q 017601 206 GGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKY 284 (369)
Q Consensus 206 ~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~ 284 (369)
+++.+++++.|+.|..||.+++ +.+-++.. ..+.+..+.+++ .+++++.|+.|+.||.++++.+..+..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG---~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG---SIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC---CEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCC---CEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 3568888999999999999998 66655543 334445556677 7888889999999999998887666544111
Q ss_pred ceEEEEEcCC--CCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 285 EITGLSFSSI--DSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 285 ~v~~l~~sp~--d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.+. .+|. ++..+++++.|+.++.||.++++.+-.+..+. ....++++..|+.++.|+.|+.||.++++.
T Consensus 82 ~~~---~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 82 LVQ---ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp HHT---TCSCC-----CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ccc---cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 111 1121 34567888899999999999998887776554 123355788899999999999999998864
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-06 Score=78.10 Aligned_cols=185 Identities=9% Similarity=-0.022 Sum_probs=110.6
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG 231 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~ 231 (369)
+.+|+|+++.++.+. ..++.|..||... ..+.+.. +..+..+.. ++++ .++.++. ..|.+||..++ +
T Consensus 53 gp~~~~~~~~l~~~d-~~~~~i~~~d~~~~~~~~~~~---~~~v~~i~~---~~dg-~l~v~~~-~gl~~~d~~~g---~ 120 (326)
T 2ghs_A 53 GPTFDPASGTAWWFN-ILERELHELHLASGRKTVHAL---PFMGSALAK---ISDS-KQLIASD-DGLFLRDTATG---V 120 (326)
T ss_dssp EEEEETTTTEEEEEE-GGGTEEEEEETTTTEEEEEEC---SSCEEEEEE---EETT-EEEEEET-TEEEEEETTTC---C
T ss_pred CCeEeCCCCEEEEEE-CCCCEEEEEECCCCcEEEEEC---CCcceEEEE---eCCC-eEEEEEC-CCEEEEECCCC---c
Confidence 688999766666666 7788999999753 2332222 222322221 2344 4555554 45999998876 3
Q ss_pred eeeeeec----cCCCcEEEEEECCCC-cEEEEeC------CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE
Q 017601 232 CLHRICG----SVGDILYAVCSSSTG-NIAVAGA------DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 232 ~~~~~~~----~~~~~v~~v~~sp~g-~lasgs~------D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
.. .+.. .....++.++++|+| ++++... .+.|..+| +++.. .+..+ ......++|+| |++.|+
T Consensus 121 ~~-~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~-~~~~~~i~~s~-dg~~ly 194 (326)
T 2ghs_A 121 LT-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD-ISIPNSICFSP-DGTTGY 194 (326)
T ss_dssp EE-EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE-ESSEEEEEECT-TSCEEE
T ss_pred EE-EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC-CcccCCeEEcC-CCCEEE
Confidence 32 2221 102468999999999 4443322 24555556 44432 33333 34578999999 998765
Q ss_pred EE-ECCCeEEEEECc--CC-ce-----eEEEEcC-CCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 301 VQ-GVDYEVFCGQWR--ES-SK-----VFAFRGD-SNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 301 s~-s~D~~i~vwd~~--~~-~~-----~~~~~g~-~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
.+ +.++.|.+||+. ++ .. ...+... ....++...++|.++++...++.|.+||..
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 54 457899999986 44 32 1122111 111344445588888877778899999983
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.69 E-value=6e-06 Score=77.03 Aligned_cols=202 Identities=9% Similarity=-0.082 Sum_probs=121.7
Q ss_pred eeEEEEeecCCCCceEEEEEe--cCCcEEEEEecCCCCCCcccccc-ccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 95 VQSIALAETDSSGYMVLGSVD--SYGHLIVSKLDTSGKDVDRLTYS-VLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d--~~g~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
-..++|+||+ ..|+... ....|.++| .++. + ... +. . ++ ++.+.|.+...+++. +.|
T Consensus 127 p~~~~~spDG----~~l~v~n~~~~~~v~viD-~t~~--~---~~~~i~-----~--~~--~~~~~~~~~~~~~~~-~~d 186 (373)
T 2mad_H 127 SWMNANTPNN----ADLLFFQFAAGPAVGLVV-QGGS--S---DDQLLS-----S--PT--CYHIHPGAPSTFYLL-CAQ 186 (373)
T ss_pred ccceEECCCC----CEEEEEecCCCCeEEEEE-CCCC--E---EeEEcC-----C--Cc--eEEEEeCCCceEEEE-cCC
Confidence 3478999985 4554443 256799998 6541 1 111 11 0 00 245556555555555 678
Q ss_pred ceEEEEeCCc-ceEEEEe---eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC-------
Q 017601 172 KSIDVYDQDI-HLRTLRT---LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV------- 240 (369)
Q Consensus 172 ~~i~lwd~~~-~~~~~~~---~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~------- 240 (369)
+.+.++|... ....... ......+ .....+.++++.++..+..+.+.+.|+..... ..+..+....
T Consensus 187 g~~~~vd~~g~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~~~~~~ 263 (373)
T 2mad_H 187 GGLAKTDHAGGAAGAGLVGAMLTAAQNL--LTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGGRKADT 263 (373)
T ss_pred CCEEEEECCCcEEEEEeccccccCCcce--eecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCcccccc
Confidence 9998898721 1111110 0001110 01111223445666666778999999875411 1222222100
Q ss_pred --CCcEEEEEECCCC-cEEEEeC----------CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCC-EEEEEE-CC
Q 017601 241 --GDILYAVCSSSTG-NIAVAGA----------DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSN-YIYVQG-VD 305 (369)
Q Consensus 241 --~~~v~~v~~sp~g-~lasgs~----------D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~-~l~s~s-~D 305 (369)
......++|+|++ ++.++.. ++.|.++|+.+++.+.++.. .....+++|+| |++ +++++. .+
T Consensus 264 ~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~-Dg~~~l~v~~~~~ 340 (373)
T 2mad_H 264 WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQ-DGGPDLYALSAGT 340 (373)
T ss_pred eecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CCCcCeEEECC-CCCeEEEEEcCCC
Confidence 1234457899999 6655443 35799999999999988863 34689999999 999 788877 58
Q ss_pred CeEEEEECcCCceeEEE
Q 017601 306 YEVFCGQWRESSKVFAF 322 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~ 322 (369)
++|.++|..+++.+..+
T Consensus 341 ~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 341 EVLHIYDAGAGDQDQST 357 (373)
T ss_pred CeEEEEECCCCCEEeee
Confidence 99999999999888773
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.6e-06 Score=78.94 Aligned_cols=195 Identities=11% Similarity=0.019 Sum_probs=115.5
Q ss_pred EEEECCCCceeEEEEec---------ccceEEEEeCC--cceEEEEee--------eCCcceeeeccCCCCCCCCcEEEE
Q 017601 153 GLCFSPSQWSMAAVARS---------FSKSIDVYDQD--IHLRTLRTL--------WYPSSLNFVQNLSPVNGGPNMLAV 213 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s---------~d~~i~lwd~~--~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~lla~ 213 (369)
+++++|++..++++. . .++.|.++|.. +.+..+... ..|..+.+ ++|+.++..+
T Consensus 122 gia~SpDgk~lyVan-~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~------spDGk~lyV~ 194 (426)
T 3c75_H 122 HPVAAEDGSFFAQAS-TVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL------TPDNKNLLFY 194 (426)
T ss_dssp EEEECTTSSCEEEEE-EEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE------CTTSSEEEEE
T ss_pred ceEECCCCCEEEEEe-ccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE------cCCCCEEEEE
Confidence 699999766554443 2 36789999986 344444431 12333333 3567677666
Q ss_pred Ec--CCeEEEEeCCcccCCceeeeeeccCCC-cE------EEEEECCCC-cEEEEeC-----------------------
Q 017601 214 TE--GCQLTIWDLRMKENGGCLHRICGSVGD-IL------YAVCSSSTG-NIAVAGA----------------------- 260 (369)
Q Consensus 214 s~--d~~v~iwD~~~~~~~~~~~~~~~~~~~-~v------~~v~~sp~g-~lasgs~----------------------- 260 (369)
.. +++|.+.|+.+. +.+.++... +. .+ ..++++++| +++....
T Consensus 195 n~~~~~~VsVID~~t~---kvv~~I~v~-g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~ 270 (426)
T 3c75_H 195 QFSPAPAVGVVDLEGK---TFDRMLDVP-DCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHP 270 (426)
T ss_dssp ECSSSCEEEEEETTTT---EEEEEEECC-SEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCC
T ss_pred ecCCCCeEEEEECCCC---eEEEEEEcC-CceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEe
Confidence 53 579999999988 666666542 11 00 113444555 2222222
Q ss_pred --------------CCcEEEEeCCCcee--eeecc---cc------ccCceEEEEEcCCCCCEEEEEEC----------C
Q 017601 261 --------------DRTVTIYDPRRWSA--LSRWV---HC------SKYEITGLSFSSIDSNYIYVQGV----------D 305 (369)
Q Consensus 261 --------------D~~v~vwD~~~~~~--~~~~~---~h------~~~~v~~l~~sp~d~~~l~s~s~----------D 305 (369)
.+.|.+.|...... +..+. .. .......++|+| +++.++.... +
T Consensus 271 ~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~s 349 (426)
T 3c75_H 271 AFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAAS 349 (426)
T ss_dssp EECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSCE
T ss_pred eecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccccccCCC
Confidence 23344444332211 01110 00 001122378999 8887666532 3
Q ss_pred CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCC-EEEEEe-CCCcEEEEECCCCcc
Q 017601 306 YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRD-VLGGWS-DSGSIFVADVVAKEN 359 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~-~l~sgs-~dg~I~iWd~~~~~~ 359 (369)
++|.+.|..+.+.+..+.....-.++...+|++ ++++.. .++.|.++|+++++.
T Consensus 350 ~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 350 RFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp EEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 589999999999888885322124666778998 888888 599999999999874
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-06 Score=77.40 Aligned_cols=185 Identities=16% Similarity=0.091 Sum_probs=111.6
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGG 231 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~ 231 (369)
+.+|+|++..++.+. ..++.|..|+.+.....+... ......+. +++++ .++++.. ++.|.+||.. + +
T Consensus 49 gp~~~~~g~~l~~~d-~~~~~i~~~~~~g~~~~~~~~--~~~~~gl~---~d~dG-~l~v~~~~~~~v~~~~~~-g---~ 117 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSD-LVGRRVLGWREDGTVDVLLDA--TAFTNGNA---VDAQQ-RLVHCEHGRRAITRSDAD-G---Q 117 (305)
T ss_dssp EEEEEGGGTEEEEEE-TTTTEEEEEETTSCEEEEEES--CSCEEEEE---ECTTS-CEEEEETTTTEEEEECTT-S---C
T ss_pred CCeEeCCCCEEEEEE-CCCCEEEEEeCCCCEEEEeCC--CCccceee---ECCCC-CEEEEECCCCEEEEECCC-C---C
Confidence 688999665566665 788899999876544444322 12222222 23444 4665554 5789999975 4 2
Q ss_pred eeeeee----ccCCCcEEEEEECCCC-cEEE----EeC-------------CCcEEEEeCCCceeeeeccccccCceEEE
Q 017601 232 CLHRIC----GSVGDILYAVCSSSTG-NIAV----AGA-------------DRTVTIYDPRRWSALSRWVHCSKYEITGL 289 (369)
Q Consensus 232 ~~~~~~----~~~~~~v~~v~~sp~g-~las----gs~-------------D~~v~vwD~~~~~~~~~~~~h~~~~v~~l 289 (369)
. ..+. ......++.++++|+| ++++ |.. .+.|..||..+++..... . ......+
T Consensus 118 ~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~-~~~p~gl 193 (305)
T 3dr2_A 118 A-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D-LDHPNGL 193 (305)
T ss_dssp E-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E-ESSEEEE
T ss_pred E-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c-CCCCcce
Confidence 2 2221 1102346789999999 5554 332 256788888766544333 3 4567899
Q ss_pred EEcCCCCCEEEEEECC------CeEEEEECcCCce--eEEEEc--CCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 290 SFSSIDSNYIYVQGVD------YEVFCGQWRESSK--VFAFRG--DSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 290 ~~sp~d~~~l~s~s~D------~~i~vwd~~~~~~--~~~~~g--~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+|+| |++.|+.+... +.|++||+..+.. ...+.. .....++...++|.+.++. .+| |.+|+..
T Consensus 194 ~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~~ 266 (305)
T 3dr2_A 194 AFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDSD 266 (305)
T ss_dssp EECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE-EEEECTT
T ss_pred EEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc-EEEECCC
Confidence 9999 99988777665 7899999876531 112210 1111344445678855544 444 9999874
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.9e-06 Score=78.04 Aligned_cols=137 Identities=10% Similarity=0.082 Sum_probs=91.7
Q ss_pred CCeEEEEeCCcccCCceeeeeeccC-----CCcEEEEEECCCC--cEEEEe---CCCcEEEEeCCCceeeeeccccc---
Q 017601 216 GCQLTIWDLRMKENGGCLHRICGSV-----GDILYAVCSSSTG--NIAVAG---ADRTVTIYDPRRWSALSRWVHCS--- 282 (369)
Q Consensus 216 d~~v~iwD~~~~~~~~~~~~~~~~~-----~~~v~~v~~sp~g--~lasgs---~D~~v~vwD~~~~~~~~~~~~h~--- 282 (369)
+.+|.+||+.++ +.+..+.... ...++.++++|++ .+++.. .++.|.+||+.+++....+.+|.
T Consensus 92 ~~~i~~~d~~tg---~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 92 VPKLVAWDTLNN---QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA 168 (343)
T ss_dssp CCEEEEEETTTT---EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred CCeEEEEECCCC---eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence 579999999887 5555554320 2356899999865 445555 68899999998877655554320
Q ss_pred -------------------------cCceEEEEEcCCCCCEEEEEECCC-eEEEEECc---CC-----c---eeEEE--E
Q 017601 283 -------------------------KYEITGLSFSSIDSNYIYVQGVDY-EVFCGQWR---ES-----S---KVFAF--R 323 (369)
Q Consensus 283 -------------------------~~~v~~l~~sp~d~~~l~s~s~D~-~i~vwd~~---~~-----~---~~~~~--~ 323 (369)
...+..++|+| |++.|+.+..++ .+..++.. .+ + .+..+ .
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 247 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEK 247 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEEC
T ss_pred ccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccC
Confidence 02368899999 999998888776 55555432 11 0 01111 2
Q ss_pred cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 324 GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 324 g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+.. .++...++|.++++...++.|.+||.++++
T Consensus 248 g~p--dgia~d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 248 PIC--DGISIDKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp CSC--SCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred CCC--ceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence 233 456556689999999999999999985554
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.6e-06 Score=84.30 Aligned_cols=196 Identities=10% Similarity=0.008 Sum_probs=114.0
Q ss_pred CeeEEEECCCCceeEEEEe----cccceEEEEeCCcce-EEEEeeeC-CcceeeeccCCCCCCCCcEEEEEcCC------
Q 017601 150 SWSGLCFSPSQWSMAAVAR----SFSKSIDVYDQDIHL-RTLRTLWY-PSSLNFVQNLSPVNGGPNMLAVTEGC------ 217 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~----s~d~~i~lwd~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~~~~lla~s~d~------ 217 (369)
.+.+++|||++. .+|.+. +...+|++||+.... ........ ...+.|. |+..|+.++.+.
T Consensus 130 ~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-------Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 130 ALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-------GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp EEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-------TTTEEEEEESSCCC----
T ss_pred EEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-------CCCEEEEEEecCcccccc
Confidence 356789999654 555332 334679999985322 21111111 1223332 466787777663
Q ss_pred -------eEEEEeCCcccCC-ceeeeeec-cCCCcEEEEEECCCC-cE-EEEeC---CCcEEEEeCCCce-eeeeccccc
Q 017601 218 -------QLTIWDLRMKENG-GCLHRICG-SVGDILYAVCSSSTG-NI-AVAGA---DRTVTIYDPRRWS-ALSRWVHCS 282 (369)
Q Consensus 218 -------~v~iwD~~~~~~~-~~~~~~~~-~~~~~v~~v~~sp~g-~l-asgs~---D~~v~vwD~~~~~-~~~~~~~h~ 282 (369)
.|.+|++.++... ..+..... + ...+.++.|+||| +| ++.+. +..|.++|+.++. ....+..+
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~- 279 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ-HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD- 279 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGG-CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCC-CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-
Confidence 4999999876211 12222222 1 2347789999999 54 44332 3589999998753 45566666
Q ss_pred cCceEEEEEcCCCCCEEEE-EECC---CeEEEEECcCCce--eEEEEcCCCeeeeeEcCCCCEEEEEeC-CC--cEEEEE
Q 017601 283 KYEITGLSFSSIDSNYIYV-QGVD---YEVFCGQWRESSK--VFAFRGDSNWLGFSKCSNRDVLGGWSD-SG--SIFVAD 353 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s-~s~D---~~i~vwd~~~~~~--~~~~~g~~~~~~~~~~~d~~~l~sgs~-dg--~I~iWd 353 (369)
....... |++ ++..|+. ...| +.|..+|+.++.. ...+..|.... +...++++.|+.... ++ .|++|+
T Consensus 280 ~~~~~~~-~~~-~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 280 LDADVSL-VDN-KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV-LTVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp SSSCEEE-EEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC-EEEEEETTEEEEEEEETTEEEEEEEC
T ss_pred CCceEEE-Eec-cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE-EEEEEECCEEEEEEEECCeeEEEEEE
Confidence 5555555 666 6665554 4443 5799999987644 34454444211 233456776665554 44 789999
Q ss_pred CCCCc
Q 017601 354 VVAKE 358 (369)
Q Consensus 354 ~~~~~ 358 (369)
+..+.
T Consensus 357 ~~g~~ 361 (693)
T 3iuj_A 357 YEGKR 361 (693)
T ss_dssp TTSCE
T ss_pred CCCCe
Confidence 87554
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.7e-05 Score=71.51 Aligned_cols=236 Identities=9% Similarity=-0.049 Sum_probs=127.4
Q ss_pred ceeeEEEEeecCCCCceEEEEEe--cCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVD--SYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d--~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
.....|++++++ .++++.. ..+.+.+|.++.+ . ...+.-........-....+++|+++ +.++++- ..
T Consensus 17 ~~p~~va~~~~g----~~~v~~~~~~~~~~~l~~~~~g-~---~~~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D-~g 86 (343)
T 2qe8_A 17 LAPGNITLTPDG----RLFLSLHQFYQPEMQVAELTQD-G---LIPFPPQSGNAIITFDTVLGIKSDGN-GIVWMLD-NG 86 (343)
T ss_dssp SCEEEEEECTTS----CEEEEECGGGCCSCSEEEEETT-E---EEESCCCCSSCCCCCSCEEEEEECSS-SEEEEEE-CH
T ss_pred CCcceEEECCCC----CEEEEeCCCCCCceEEEEECCC-C---eecCCCcccCcccceeEeeEEEEcCC-CcEEEEc-CC
Confidence 567899999874 4555543 2242334444322 1 11110000000111123568999995 4444443 32
Q ss_pred -----cceEEEEeCC--cceEEEEeee-------CCcceeeeccCCCCCCCCcE-EEEE---cCCeEEEEeCCcccCCce
Q 017601 171 -----SKSIDVYDQD--IHLRTLRTLW-------YPSSLNFVQNLSPVNGGPNM-LAVT---EGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 171 -----d~~i~lwd~~--~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~l-la~s---~d~~v~iwD~~~~~~~~~ 232 (369)
+..|.+||.. +.++.+.... .+..+.+ +++++.+ ++-. .++.|.+||+.++ +.
T Consensus 87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~v------d~~~g~~yvtd~~~~~~~~i~v~d~~~g---~~ 157 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAV------DLIHNFVYISDPAPDDKAALIRVDLQTG---LA 157 (343)
T ss_dssp HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEE------ETTTTEEEEEECCSGGGCEEEEEETTTC---CE
T ss_pred CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEE------ecCCCEEEEEcCccCCCCeEEEEECCCC---CE
Confidence 4789999975 3344443211 1122222 2333343 4444 5789999999866 33
Q ss_pred eeeeeccC----------------------------CCcEEEEEECCCC-cEEEEeCCC-cEEEEeCC---Cce-----e
Q 017601 233 LHRICGSV----------------------------GDILYAVCSSSTG-NIAVAGADR-TVTIYDPR---RWS-----A 274 (369)
Q Consensus 233 ~~~~~~~~----------------------------~~~v~~v~~sp~g-~lasgs~D~-~v~vwD~~---~~~-----~ 274 (369)
...+.++. ...++.++|+|+| .|+.+..++ .+..+|.. .+. .
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAEL 237 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHH
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhh
Confidence 33221100 0236889999999 777776665 44444421 111 1
Q ss_pred ee--eccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC-CC-eeeeeEcCCCCEEEEEeCCCcE
Q 017601 275 LS--RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD-SN-WLGFSKCSNRDVLGGWSDSGSI 349 (369)
Q Consensus 275 ~~--~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~-~~-~~~~~~~~d~~~l~sgs~dg~I 349 (369)
.. ...++ ......+++++ +|.++++...++.|.+||..+++........ .. -.++...+++.++++.+..+.+
T Consensus 238 ~~~~~~~g~-~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 238 GSKIERYSE-KPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp HTTCEEEEE-CCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred hcceEeccc-CCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 11 11234 45567899999 9999999989999999998556543333322 11 1234444577777777755544
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.6e-05 Score=71.87 Aligned_cols=191 Identities=6% Similarity=-0.057 Sum_probs=118.8
Q ss_pred EEEC--CCCceeEEEEecccceEEEEeCCc---ceEEEEee-----------eCCcceeeeccCCCCCCCCcEEEEEcC-
Q 017601 154 LCFS--PSQWSMAAVARSFSKSIDVYDQDI---HLRTLRTL-----------WYPSSLNFVQNLSPVNGGPNMLAVTEG- 216 (369)
Q Consensus 154 l~~~--p~~~~~~a~~~s~d~~i~lwd~~~---~~~~~~~~-----------~~~~~v~~~~~~~~~~~~~~lla~s~d- 216 (369)
..++ ++...+++.+ ..+..|.++|+.. ..+..+.. ..|..+.+ .|++ .++++..+
T Consensus 87 ~~~~~~~~r~~l~v~~-l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~------~pdG-i~Vs~~g~~ 158 (462)
T 2ece_A 87 PNGKPNIERRFLIVPG-LRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHC------GPDA-IYISALGNE 158 (462)
T ss_dssp TTCCTTCCSCEEEEEB-TTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEE------CSSC-EEEEEEEET
T ss_pred cccCCCccCCEEEEcc-CCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeE------CCCe-EEEEcCCCc
Confidence 3445 6455555555 8889999999841 11222221 01112222 2455 66766555
Q ss_pred -----CeEEEEeCCcccCCceeeeeeccC--CCcEEEEEECCCC-cEEEEe-------------------CCCcEEEEeC
Q 017601 217 -----CQLTIWDLRMKENGGCLHRICGSV--GDILYAVCSSSTG-NIAVAG-------------------ADRTVTIYDP 269 (369)
Q Consensus 217 -----~~v~iwD~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g-~lasgs-------------------~D~~v~vwD~ 269 (369)
+.|.+.|.++. +.+.++.... ...-|.+-|+|++ .+++.. .+.+|.+||+
T Consensus 159 ~g~~~g~v~vlD~~T~---~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 159 EGEGPGGILMLDHYSF---EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp TSCSCCEEEEECTTTC---CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CCCCCCeEEEEECCCC---eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 78999999988 7777775220 1234568889999 666664 3789999999
Q ss_pred CCceeeeecccc-ccCceEEEEE--cCCCCCEEEEEE------CCCeEEEEECcCCce--eEEE--Ec------------
Q 017601 270 RRWSALSRWVHC-SKYEITGLSF--SSIDSNYIYVQG------VDYEVFCGQWRESSK--VFAF--RG------------ 324 (369)
Q Consensus 270 ~~~~~~~~~~~h-~~~~v~~l~~--sp~d~~~l~s~s------~D~~i~vwd~~~~~~--~~~~--~g------------ 324 (369)
.+++.+.++.-- .......+.| +| +++++..++ .+++|.+|....++. ...+ ..
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccc
Confidence 998888776631 0233455656 99 999877766 567898877665321 1111 00
Q ss_pred -----CCCeeeeeEcCCCCEEEEEeC-CCcEEEEECCC
Q 017601 325 -----DSNWLGFSKCSNRDVLGGWSD-SGSIFVADVVA 356 (369)
Q Consensus 325 -----~~~~~~~~~~~d~~~l~sgs~-dg~I~iWd~~~ 356 (369)
......+..++||++|+.+.. .+.|.++|+..
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred ccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 011123444669998887776 68999999863
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.51 E-value=4.9e-05 Score=70.41 Aligned_cols=177 Identities=14% Similarity=0.019 Sum_probs=109.2
Q ss_pred eEEEEecccceEEEEeCC--cceEEEEeeeCC-----cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee
Q 017601 163 MAAVARSFSKSIDVYDQD--IHLRTLRTLWYP-----SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR 235 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~ 235 (369)
.+.++ ..++.+..+|.. +........... ..+..+...+.- .++.+..++.++.+..+|.+++ +.+-.
T Consensus 190 ~v~~g-~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~~g~l~~~d~~tG---~~~w~ 264 (376)
T 3q7m_A 190 AAVVG-GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAYNGNLTALDLRSG---QIMWK 264 (376)
T ss_dssp EEEEC-CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECTTSCEEEEETTTC---CEEEE
T ss_pred EEEEE-cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEecCcEEEEEECCCC---cEEee
Confidence 45555 678889999874 333222211100 000001111110 2457777888999999999988 55544
Q ss_pred eeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 236 ICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 236 ~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
... ....++... ++.+..++.++.|..+|.++++.+-.........+..... .+..|+.++.++.+.++|.++
T Consensus 265 ~~~---~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~---~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 265 REL---GSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL---YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp ECC---CCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE---ETTEEEEECTTSEEEEEETTT
T ss_pred ccC---CCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE---ECCEEEEEeCCCeEEEEECCC
Confidence 432 234444443 3478888889999999999998776554210222333333 246788889999999999999
Q ss_pred CceeEEEEcCCCeeeeeEcC--CCCEEEEEeCCCcEEEEE
Q 017601 316 SSKVFAFRGDSNWLGFSKCS--NRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 316 ~~~~~~~~g~~~~~~~~~~~--d~~~l~sgs~dg~I~iWd 353 (369)
++.+..+.... ..+...+ .+..|+.++.+|.|+.|+
T Consensus 338 G~~~~~~~~~~--~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 338 GRFVAQQKVDS--SGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCEEEEEECCT--TCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred CcEEEEEecCC--CcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 99887776532 1222222 456788899999999987
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.4e-05 Score=71.47 Aligned_cols=223 Identities=9% Similarity=-0.021 Sum_probs=126.9
Q ss_pred EEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCC--cceEEEE
Q 017601 110 VLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLR 187 (369)
Q Consensus 110 ~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~ 187 (369)
.+..++.++.|+.+|..++.. .+....... .. ...... + ..+.++ +.++.|..+|.. +......
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~-----~W~~~~~~~-~~----~~p~~~--~-~~v~v~-~~~g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTV-----AWQTKVAGE-AL----SRPVVS--D-GLVLIH-TSNGQLQALNEADGAVKWTVN 170 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCE-----EEEEECSSC-CC----SCCEEE--T-TEEEEE-CTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCE-----EEEEeCCCc-eE----cCCEEE--C-CEEEEE-cCCCeEEEEECCCCcEEEEEe
Confidence 455556678888888765521 121111110 00 011221 2 355555 678899999964 3333332
Q ss_pred eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC-C-----cEEEEEECC---CCcEEEE
Q 017601 188 TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG-D-----ILYAVCSSS---TGNIAVA 258 (369)
Q Consensus 188 ~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~-~-----~v~~v~~sp---~g~lasg 258 (369)
.......... ...+. ..++.++.++.++.+..+|.+++ +.+-....... . .+..+.-.| ++.+..+
T Consensus 171 ~~~~~~~~~~-~~~~~-~~~~~v~~g~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~ 245 (376)
T 3q7m_A 171 LDMPSLSLRG-ESAPT-TAFGAAVVGGDNGRVSAVLMEQG---QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL 245 (376)
T ss_dssp CCC-----CC-CCCCE-EETTEEEECCTTTEEEEEETTTC---CEEEEEECCC-----------CCCCCCEEETTEEEEE
T ss_pred CCCCceeecC-CCCcE-EECCEEEEEcCCCEEEEEECCCC---cEEEEEecccCCCCcccccccccCCCcEEECCEEEEE
Confidence 2111100000 00010 02357777778999999999988 55544432200 0 000011111 3477888
Q ss_pred eCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcC--C
Q 017601 259 GADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCS--N 336 (369)
Q Consensus 259 s~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~--d 336 (369)
+.++.+..+|.++++.+-.... .....+.. ++..++.++.++.+..+|.++++.+-...... ......+ .
T Consensus 246 ~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~ 317 (376)
T 3q7m_A 246 AYNGNLTALDLRSGQIMWKREL---GSVNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLL--HRLLTSPVLY 317 (376)
T ss_dssp CTTSCEEEEETTTCCEEEEECC---CCEEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTTT--TSCCCCCEEE
T ss_pred ecCcEEEEEECCCCcEEeeccC---CCCCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeecccC--CCcccCCEEE
Confidence 8899999999999987755442 22344443 45678888899999999999998776664211 0011111 4
Q ss_pred CCEEEEEeCCCcEEEEECCCCcc
Q 017601 337 RDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 337 ~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+..|+.++.+|.|+++|.++++.
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCeEEEEECCCCcE
Confidence 67888999999999999998864
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-05 Score=79.84 Aligned_cols=138 Identities=9% Similarity=0.029 Sum_probs=92.1
Q ss_pred eEEEEeCCcccCCceeeeeec--cC------CCcEEEEEECCCC----cEEEEeCCCcEEEEeCCCceeeeeccccc---
Q 017601 218 QLTIWDLRMKENGGCLHRICG--SV------GDILYAVCSSSTG----NIAVAGADRTVTIYDPRRWSALSRWVHCS--- 282 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~--~~------~~~v~~v~~sp~g----~lasgs~D~~v~vwD~~~~~~~~~~~~h~--- 282 (369)
.|..||.+++ +.+-.++. +. ..++.......+| .++.++.+|.++++|.++++.+....-..
T Consensus 276 ~v~AlD~~TG---~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w 352 (689)
T 1yiq_A 276 SIVAVNADTG---EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSW 352 (689)
T ss_dssp EEEEEETTTC---CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred eEEEEEccCC---ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccc
Confidence 3999999998 66554442 10 1122222222345 58889999999999999998873221100
Q ss_pred ------------------------c-----------CceEEEEEcCCCCCEEEEEEC-----------------------
Q 017601 283 ------------------------K-----------YEITGLSFSSIDSNYIYVQGV----------------------- 304 (369)
Q Consensus 283 ------------------------~-----------~~v~~l~~sp~d~~~l~s~s~----------------------- 304 (369)
+ .....++|+| +..++++...
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ 431 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeeccccccccccccccc
Confidence 0 0112378888 7777776532
Q ss_pred ----------------------CCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 305 ----------------------DYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 305 ----------------------D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+++|+.||+.+++.+-.+..+..+.+-.....+.+++.|+.||.|+.||.++|+.
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence 4789999999999888876655333222233678999999999999999999975
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=6.6e-06 Score=76.47 Aligned_cols=236 Identities=9% Similarity=-0.109 Sum_probs=132.1
Q ss_pred EEEEeecCCCCceEEEEE--------ecCCcEEEEEecCCCCCCcccccccc-CCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 97 SIALAETDSSGYMVLGSV--------DSYGHLIVSKLDTSGKDVDRLTYSVL-PQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 97 ~l~~s~~~~~~~~~las~--------d~~g~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
.++|+||+ +...++.. ..++.|.++|..+... .....+. +.....+... .+++|+|++.. ++++
T Consensus 69 ~i~~spDg--~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v---v~~I~v~~~~~~~~g~~P-~~ia~SpDGk~-lyVa 141 (368)
T 1mda_H 69 LAVAGHSG--SDFALASTSFARSAKGKRTDYVEVFDPVTFLP---IADIELPDAPRFSVGPRV-HIIGNCASSAC-LLFF 141 (368)
T ss_dssp EEEECTTS--SCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---EEEEEETTSCSCCBSCCT-TSEEECTTSSC-EEEE
T ss_pred ceEECCCC--CEEEEEcccccccccCCCCCEEEEEECCCCCE---EEEEECCCccccccCCCc-ceEEEcCCCCE-EEEE
Confidence 58999985 22333321 1357899999886521 1111111 0000000001 15999996654 4544
Q ss_pred ecc-cceEEE--EeCCcceEEEEeeeCCcceeeeccCCCCCCC-CcEEEEEcCCeEEEEeCCc-----ccCCceee----
Q 017601 168 RSF-SKSIDV--YDQDIHLRTLRTLWYPSSLNFVQNLSPVNGG-PNMLAVTEGCQLTIWDLRM-----KENGGCLH---- 234 (369)
Q Consensus 168 ~s~-d~~i~l--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~lla~s~d~~v~iwD~~~-----~~~~~~~~---- 234 (369)
-.. ...|.+ +|... ++.+.. +.+.... +++ ..+++.+.|+++.+.|+.+ + +.+.
T Consensus 142 n~~~~~~v~V~~iD~~t-v~~i~v---~~~~~~~------p~g~~~~~~~~~dg~~~~vd~~~~~~~~~---~v~~~~t~ 208 (368)
T 1mda_H 142 LFGSSAAAGLSVPGASD-DQLTKS---ASCFHIH------PGAAATHYLGSCPASLAASDLAAAPAAAG---IVGAQCTG 208 (368)
T ss_dssp ECSSSCEEEEEETTTEE-EEEEEC---SSCCCCE------EEETTEEECCCCTTSCEEEECCSSCCCCE---ECCCCSCT
T ss_pred ccCCCCeEEEEEEchhh-ceEEEC---CCceEEc------cCCCeEEEEEcCCCCEEEEECccccccCC---eEEEEeee
Confidence 122 467888 99866 444422 1111111 222 3455566788888888876 3 2211
Q ss_pred eeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc--eeeeeccc-------c--ccCceEEEEEcCCCCCEEEEE
Q 017601 235 RICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW--SALSRWVH-------C--SKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 235 ~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~--~~~~~~~~-------h--~~~~v~~l~~sp~d~~~l~s~ 302 (369)
.+... ..+. + ++++ .++..+. +.|.+.|.... +.+..+.- + .......++|+| |++.++.+
T Consensus 209 ~i~vg-~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~ 281 (368)
T 1mda_H 209 AQNCS-SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMIL 281 (368)
T ss_dssp TSCBC-SCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEE
T ss_pred eeeCC-CCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEE
Confidence 11111 2444 3 4555 5555555 89999998653 23333321 1 011112268999 98887765
Q ss_pred EC---------CCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCC-EEEEEe-CCCcEEEEECCCCcc
Q 017601 303 GV---------DYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRD-VLGGWS-DSGSIFVADVVAKEN 359 (369)
Q Consensus 303 s~---------D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~-~l~sgs-~dg~I~iWd~~~~~~ 359 (369)
.. +..+.++|+.+.+.+..+.....-.++...+||+ ++++.. .++.|.++|+++++.
T Consensus 282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred eccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 32 2356699999988877774332225667778887 566776 599999999999874
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=2e-05 Score=79.41 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=92.5
Q ss_pred eEEEEeCCcccCCceeeeeec--cC------CCcEEEEEECCCC----cEEEEeCCCcEEEEeCCCceeeeeccccc---
Q 017601 218 QLTIWDLRMKENGGCLHRICG--SV------GDILYAVCSSSTG----NIAVAGADRTVTIYDPRRWSALSRWVHCS--- 282 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~--~~------~~~v~~v~~sp~g----~lasgs~D~~v~vwD~~~~~~~~~~~~h~--- 282 (369)
.|..+|.+++ +.+-.++. +. ......+....+| .++.++.+|.|.++|.++++.+..+.-..
T Consensus 284 sv~AlD~~TG---~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 284 SIVALDPDTG---KYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW 360 (677)
T ss_dssp EEEEECTTTC---CEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred EEEEEECCCC---CEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence 5999999998 55544442 10 0112223333455 58889999999999999998876543110
Q ss_pred -------cCce------------------------EEEEEcCCCCCEEEEEECC--------------------------
Q 017601 283 -------KYEI------------------------TGLSFSSIDSNYIYVQGVD-------------------------- 305 (369)
Q Consensus 283 -------~~~v------------------------~~l~~sp~d~~~l~s~s~D-------------------------- 305 (369)
...+ ..++|+| +..++++...+
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeecccccccccccccccccccc
Confidence 0001 2578899 77787775432
Q ss_pred -----------------CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 306 -----------------YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 306 -----------------~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.|..||+.+++.+-.+.....+.+.....++.+++.++.||.+++||.++++.
T Consensus 440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 789999999998877765433212222233677888899999999999999974
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=9.2e-05 Score=65.32 Aligned_cols=206 Identities=12% Similarity=0.049 Sum_probs=127.1
Q ss_pred cccccCCccce--eeEEEEeecCCCCceEEEEEe-cCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC
Q 017601 84 SMLNRCPHRSE--VQSIALAETDSSGYMVLGSVD-SYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ 160 (369)
Q Consensus 84 ~~~~~~~H~~~--V~~l~~s~~~~~~~~~las~d-~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 160 (369)
..+...+|... .+.|+|++++ ...++++. ....|.+.|..++.. .....+..+ ... .++++..
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg---~Lyvstg~~~~s~v~~iD~~tg~v---~~~i~l~~~--~fg----eGi~~~g-- 75 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAEND---TLFESTGLYGRSSVRQVALQTGKV---ENIHKMDDS--YFG----EGLTLLN-- 75 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTT---EEEEEECSTTTCEEEEEETTTCCE---EEEEECCTT--CCE----EEEEEET--
T ss_pred eEEEEEECCCCCCcccEEEeCCC---eEEEECCCCCCCEEEEEECCCCCE---EEEEecCCC--cce----EEEEEeC--
Confidence 34445566643 5899999862 33333332 356899999876521 111112111 111 1466653
Q ss_pred ceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 161 WSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
+.++++. -.++.+.++|... .+..+... .+...... +|+..++.+..+++|.++|..+. +.+.++.-
T Consensus 76 ~~lyv~t-~~~~~v~viD~~t~~v~~~i~~g-~~~g~glt------~Dg~~l~vs~gs~~l~viD~~t~---~v~~~I~V 144 (266)
T 2iwa_A 76 EKLYQVV-WLKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLA------TDGKILYGSDGTSILYEIDPHTF---KLIKKHNV 144 (266)
T ss_dssp TEEEEEE-TTCSEEEEEETTTTEEEEEEECC-SSSCCEEE------ECSSSEEEECSSSEEEEECTTTC---CEEEEEEC
T ss_pred CEEEEEE-ecCCEEEEEECCCCcEEEEEECC-CCCeEEEE------ECCCEEEEECCCCeEEEEECCCC---cEEEEEEE
Confidence 4455555 6789999999863 33443322 13332222 35667776666789999999987 66666553
Q ss_pred cC----CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc-c-----------cCceEEEEEcCCCCCE-EE
Q 017601 239 SV----GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC-S-----------KYEITGLSFSSIDSNY-IY 300 (369)
Q Consensus 239 ~~----~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h-~-----------~~~v~~l~~sp~d~~~-l~ 300 (369)
.. -..++.+.|. +| .++....++.|.+.|+.+++.+.++.-. . ......++|+| +++. ++
T Consensus 145 g~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~-~~~~lfV 222 (266)
T 2iwa_A 145 KYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ-ENKRIFV 222 (266)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET-TTTEEEE
T ss_pred CCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC-CCCEEEE
Confidence 20 1247788888 78 5555556889999999999988876521 0 13468999999 7654 55
Q ss_pred EEECCCeEEEEECcCC
Q 017601 301 VQGVDYEVFCGQWRES 316 (369)
Q Consensus 301 s~s~D~~i~vwd~~~~ 316 (369)
++.....+...++...
T Consensus 223 Tgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 223 TGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EETTCSEEEEEEEEEC
T ss_pred ECCCCCeEEEEEEecc
Confidence 6667889988888653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-05 Score=75.51 Aligned_cols=129 Identities=12% Similarity=-0.006 Sum_probs=92.1
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe----------CCCcEEEEeCCCceeeeecc-c-c--
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG----------ADRTVTIYDPRRWSALSRWV-H-C-- 281 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs----------~D~~v~vwD~~~~~~~~~~~-~-h-- 281 (369)
++|.++|..+. +.+.++... ..+ .++++||| +++++. .+++|.++|..+.+.+.++. + .
T Consensus 99 ~~VsVID~~t~---~vv~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r 172 (426)
T 3c75_H 99 TQQFVIDGSTG---RILGMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR 172 (426)
T ss_dssp EEEEEEETTTT---EEEEEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred CeEEEEECCCC---EEEEEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc
Confidence 69999999998 788887754 244 89999999 676665 47799999999998887764 1 1
Q ss_pred --ccCceEEEEEcCCCCCEEEEEEC--CCeEEEEECcCCceeEEEEcCCCeeeeeEcC-CCCEEEEEeCCCcEEEEECC
Q 017601 282 --SKYEITGLSFSSIDSNYIYVQGV--DYEVFCGQWRESSKVFAFRGDSNWLGFSKCS-NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 282 --~~~~v~~l~~sp~d~~~l~s~s~--D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~-d~~~l~sgs~dg~I~iWd~~ 355 (369)
.......+.|+| |+++++.+.. ++.|.+.|+.+.+.+..+.-.. . ....+ ....+++.+.||.+.+.+..
T Consensus 173 ~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~-~~~~p~g~~~~v~~~~dG~~~~V~~~ 247 (426)
T 3c75_H 173 FLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C-YHIFPASPTVFYMNCRDGSLARVDFA 247 (426)
T ss_dssp CCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSSEEEEECC
T ss_pred cccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c-eeeccCCCcEEEEEcCCCCEEEEECC
Confidence 012356789999 9999998874 5799999999998888775432 1 01111 12445555666666666653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00016 Score=63.76 Aligned_cols=191 Identities=7% Similarity=-0.089 Sum_probs=123.2
Q ss_pred EEEECCCCceeEEEEec-ccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCccc
Q 017601 153 GLCFSPSQWSMAAVARS-FSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKE 228 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s-~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~ 228 (369)
|++|+|+ ..++++++. .+++|.++|.. +.++.+....++....+.. +++.+..+. .++.+.++|..+.
T Consensus 25 Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~------~g~~lyv~t~~~~~v~viD~~t~- 96 (266)
T 2iwa_A 25 GLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL------LNEKLYQVVWLKNIGFIYDRRTL- 96 (266)
T ss_dssp EEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE------ETTEEEEEETTCSEEEEEETTTT-
T ss_pred cEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE------eCCEEEEEEecCCEEEEEECCCC-
Confidence 7999985 444444421 26899999985 3344433222221111111 134555544 5889999999988
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccc----cCceEEEEEcCCCCCEEEEEE
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCS----KYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~----~~~v~~l~~sp~d~~~l~s~s 303 (369)
+.+.++... ... ...+++|| +++++..+++|.++|..+.+.+.++.--. -...+.+.|. ++...+...
T Consensus 97 --~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~ 169 (266)
T 2iwa_A 97 --SNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIW 169 (266)
T ss_dssp --EEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEET
T ss_pred --cEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecC
Confidence 677777532 011 13355678 66666678999999999988877765210 1236788887 565555555
Q ss_pred CCCeEEEEECcCCceeEEEEcC--------------CCeeeeeEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 017601 304 VDYEVFCGQWRESSKVFAFRGD--------------SNWLGFSKCSNRD-VLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 304 ~D~~i~vwd~~~~~~~~~~~g~--------------~~~~~~~~~~d~~-~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+++|.+-|..+++.+..+.-. ....++...++++ +++++...+.|++-++...+
T Consensus 170 ~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 170 QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 6889999999999988888521 1124666677654 56677788999999887654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00029 Score=66.49 Aligned_cols=223 Identities=10% Similarity=0.012 Sum_probs=125.3
Q ss_pred ceEEEEEecCCcEEEEEecCCCCCCccccccccCCCC--CCCC-CCeeEEEECCCCceeEEEEeccc------ceEEEEe
Q 017601 108 YMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDC--GVGE-GSWSGLCFSPSQWSMAAVARSFS------KSIDVYD 178 (369)
Q Consensus 108 ~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~l~~~p~~~~~~a~~~s~d------~~i~lwd 178 (369)
..+++++-.+.+|+++|+.+........ ..+.+.+. ..+. ..+ .+...|++ +++++ ..+ +.|.++|
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~-k~ie~~~~~~~~g~s~Ph-~~~~~pdG--i~Vs~-~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKII-KVIEPEEVKKVSGYSRLH-TVHCGPDA--IYISA-LGNEEGEGPGGILMLD 170 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEE-EEECHHHHHHHHCEEEEE-EEEECSSC--EEEEE-EEETTSCSCCEEEEEC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceee-eeechhhcccccCCCccc-ceeECCCe--EEEEc-CCCcCCCCCCeEEEEE
Confidence 5677788888999999987542211111 11100000 0000 001 47788955 44444 333 6899999
Q ss_pred CC--cceEEEEeeeCCcceee-eccCCCCCCCCcEEEEE-------------------cCCeEEEEeCCcccCCceeeee
Q 017601 179 QD--IHLRTLRTLWYPSSLNF-VQNLSPVNGGPNMLAVT-------------------EGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 179 ~~--~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~lla~s-------------------~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
.. +.+..+.....+..+.+ +. ++|+++.+++.. .+.+|.+||+.++ +.++++
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~---~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~---k~~~tI 244 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFW---WNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR---KRIHSL 244 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEE---EETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT---EEEEEE
T ss_pred CCCCeEEEEEccCCCCccccceEE---ECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC---cEeeEE
Confidence 75 33444432222222221 10 124555555553 2689999999987 677777
Q ss_pred ecc-CCCcEEEEEE--CCCC-cEEEEe------CCCcEEEEeCCCce--eeeec--c-----ccc----------cCceE
Q 017601 237 CGS-VGDILYAVCS--SSTG-NIAVAG------ADRTVTIYDPRRWS--ALSRW--V-----HCS----------KYEIT 287 (369)
Q Consensus 237 ~~~-~~~~v~~v~~--sp~g-~lasgs------~D~~v~vwD~~~~~--~~~~~--~-----~h~----------~~~v~ 287 (369)
... .+.....+.| +|++ ++.+++ .+++|.+|....++ ....+ . +.+ .....
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 642 0123445555 9999 555544 56688766543321 11111 0 000 13478
Q ss_pred EEEEcCCCCCEEEEEEC-CCeEEEEECcC---CceeEEEE-c----------------CCCeeeeeEcCCCCEEEEEe
Q 017601 288 GLSFSSIDSNYIYVQGV-DYEVFCGQWRE---SSKVFAFR-G----------------DSNWLGFSKCSNRDVLGGWS 344 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~-D~~i~vwd~~~---~~~~~~~~-g----------------~~~~~~~~~~~d~~~l~sgs 344 (369)
.+.+|| |+++|+.+.. .+.|.++|+.. .+++..+. | .. ..+..++||++|+.+.
T Consensus 325 ~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggP--r~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAP--QMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCC--CCEEECTTSSEEEEEC
T ss_pred EEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCC--CEEEEcCCCCEEEEEc
Confidence 899999 9999888766 67999999863 34444442 2 12 3555677999999888
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=6.2e-05 Score=75.81 Aligned_cols=155 Identities=9% Similarity=-0.015 Sum_probs=94.3
Q ss_pred eeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc------CCeEEEEeCCcccCCcee
Q 017601 162 SMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE------GCQLTIWDLRMKENGGCL 233 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~------d~~v~iwD~~~~~~~~~~ 233 (369)
..+.++ +.|+.+..+|.. +.+..+...........+...|.- .++.++.++. ++.|..||.+++ +.+
T Consensus 129 ~~v~v~-~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG---~~~ 203 (677)
T 1kb0_A 129 GKVYVG-AWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETG---ERK 203 (677)
T ss_dssp TEEEEE-CTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTC---CEE
T ss_pred CEEEEE-cCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCC---cEE
Confidence 356666 788999999974 444444322000000001101110 1345555443 689999999998 555
Q ss_pred eeeeccCC-------------------------------CcEEEEEECCCC-cEEEEeCCC-------------------
Q 017601 234 HRICGSVG-------------------------------DILYAVCSSSTG-NIAVAGADR------------------- 262 (369)
Q Consensus 234 ~~~~~~~~-------------------------------~~v~~v~~sp~g-~lasgs~D~------------------- 262 (369)
-++..... .....++++|++ +++.+..++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 44432100 011356888888 777777664
Q ss_pred cEEEEeCCCceeeeeccc--ccc-------CceEEEEEcCCCC---CEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 263 TVTIYDPRRWSALSRWVH--CSK-------YEITGLSFSSIDS---NYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 263 ~v~vwD~~~~~~~~~~~~--h~~-------~~v~~l~~sp~d~---~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
+|..+|.++++.+-.++. | . ....-+.... +| ..++.++.++.++++|.++++.+..+.
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~-d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPG-DNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTT-CCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEEEEEecCCC-cccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 599999999988765542 2 1 1223334444 67 678899999999999999998876654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00061 Score=59.75 Aligned_cols=193 Identities=9% Similarity=-0.008 Sum_probs=112.7
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCCcc-eEEEEe--eeCCcceeeeccCCCCCCCCcEEEE-EcCCeEEEEeCCcc
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQDIH-LRTLRT--LWYPSSLNFVQNLSPVNGGPNMLAV-TEGCQLTIWDLRMK 227 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~-s~d~~v~iwD~~~~ 227 (369)
.+++|++.+..++++. ...+.|..+|.+.. ...+.. ...+..+.+. ++++.+..+ ...+.|.++|+...
T Consensus 39 ~gi~~d~~~~~ly~~d-~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d------~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTD-ISEPSIGRASLHGGEPTTIIRQDLGSPEGIALD------HLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEETTTTEEEEEE-TTTTEEEEEESSSCCCEEEECTTCCCEEEEEEE------TTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEEEecCCCEEEEEE-CCCCEEEEEecCCCCcEEEEECCCCCccEEEEE------ecCCeEEEEECCCCEEEEEEcCCC
Confidence 4799999666665555 67789999987532 222211 1234444433 233444443 45678999998643
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC---CCcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEE
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA---DRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~---D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
. ...+..........++++|++ .|..+.. .+.|..+++.. .....+. .. ......++++| +++.|+.+
T Consensus 112 ---~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~-~~~P~gia~d~-~~~~lyv~ 184 (267)
T 1npe_A 112 ---Q-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDN-LGLPNGLTFDA-FSSQLCWV 184 (267)
T ss_dssp ---S-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTT-CSCEEEEEEET-TTTEEEEE
T ss_pred ---C-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECC-CCCCcEEEEcC-CCCEEEEE
Confidence 1 222221112567899999965 5544443 46888888753 2222222 22 34578999999 77666554
Q ss_pred -ECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 303 -GVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 303 -s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
...+.|.++|.........+.+-..-.++.. .++.++++-..++.|.++|..+++.
T Consensus 185 d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~-d~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 185 DAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS-YGKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp ETTTTEEEEEETTEEEEEEEEECCCSEEEEEE-ETTEEEEEETTTTEEEEEETTTTEE
T ss_pred ECCCCEEEEEecCCCceEEEecCCCCceEEEE-eCCEEEEEECCCCeEEEEeCCCCCc
Confidence 4567999999976443333333221133322 1344455555678999999988763
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0003 Score=63.67 Aligned_cols=196 Identities=10% Similarity=-0.050 Sum_probs=105.5
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCC-CCCcEEEEEc-------------
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVN-GGPNMLAVTE------------- 215 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~lla~s~------------- 215 (369)
..++++.+.+..++++. ..+.|..+|.. ..++.+..........+......++ ++..+++-..
T Consensus 82 p~gi~~~~~~g~l~v~d--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 82 TYDISYNLQNNQLYIVD--CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp EEEEEEETTTTEEEEEE--TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CceEEEcCCCCcEEEEE--CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 35799987344444443 33458888865 2233332111111111111112234 4544444322
Q ss_pred ----CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEE-eCCCcEEEEeCCCce--eeeeccccccCceE
Q 017601 216 ----GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVA-GADRTVTIYDPRRWS--ALSRWVHCSKYEIT 287 (369)
Q Consensus 216 ----d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasg-s~D~~v~vwD~~~~~--~~~~~~~h~~~~v~ 287 (369)
++.|..||..++ +.......- ...+.++|+|+| .|..+ ...+.|.+||+.... ....+... .. ..
T Consensus 160 ~~~~~g~v~~~d~~~~---~~~~~~~~~--~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~ 232 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTK---ETTLLLKEL--HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-PN-PG 232 (322)
T ss_dssp HTCCCEEEEEEETTTT---EEEEEEEEE--SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-SS-EE
T ss_pred ccCCCceEEEEeCCCC---EEEEeccCC--ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC-CC-CC
Confidence 256888887655 222111221 345679999998 55554 566899999987421 11111112 33 68
Q ss_pred EEEEcCCCCCEEEEEEC----------CCeEEEEECcCCceeEEEEcCC----Ce-eeeeEcCCCCEEEEEeCCCcEEEE
Q 017601 288 GLSFSSIDSNYIYVQGV----------DYEVFCGQWRESSKVFAFRGDS----NW-LGFSKCSNRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~----------D~~i~vwd~~~~~~~~~~~g~~----~~-~~~~~~~d~~~l~sgs~dg~I~iW 352 (369)
.+++.+ +|++.++... .+.|..+|.. ++.+..+.... .+ ..+. ..++.++++....+.|.++
T Consensus 233 gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~-~~~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 233 NIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQ-EHDGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp EEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEE-EETTEEEEECSSCSEEEEE
T ss_pred CeEECC-CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEE-EeCCEEEEeecCCCceEEE
Confidence 899999 9988777654 4678888864 66666665321 11 1111 1266667777778899999
Q ss_pred ECCCCc
Q 017601 353 DVVAKE 358 (369)
Q Consensus 353 d~~~~~ 358 (369)
++....
T Consensus 310 ~~~~~~ 315 (322)
T 2fp8_A 310 VYDKKG 315 (322)
T ss_dssp EC----
T ss_pred eccccc
Confidence 986544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00011 Score=71.56 Aligned_cols=135 Identities=13% Similarity=0.006 Sum_probs=90.6
Q ss_pred eEEEEeCCcccCCce-eeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCce------------eeeeccccc
Q 017601 218 QLTIWDLRMKENGGC-LHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWS------------ALSRWVHCS 282 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~-~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~------------~~~~~~~h~ 282 (369)
.|.+.|.++.+. +. +..+... ....++.++||| .++++..+.+|.++|+.+.+ ...++.-
T Consensus 255 ~V~VID~~~~~~-~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-- 329 (595)
T 1fwx_A 255 GVKVVDGRKEAS-SLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-- 329 (595)
T ss_dssp TEEEEECSGGGC-CSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC--
T ss_pred cEEEEeCcccCC-ceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC--
Confidence 588889887311 33 4555443 566789999999 55666679999999999753 2333331
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcC----------CceeEEEEcCCC-----e-eeeeEcCCCCEEEEEeC-
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE----------SSKVFAFRGDSN-----W-LGFSKCSNRDVLGGWSD- 345 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~----------~~~~~~~~g~~~-----~-~~~~~~~d~~~l~sgs~- 345 (369)
......++|+| +|...++.-.|++|.+||+.. .+.+..+..|-. + .++...+||++|++...
T Consensus 330 G~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 330 GLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp CSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred CCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 34578999999 995555667899999999977 456666654431 1 11222569999998764
Q ss_pred --CCcE----------EEEECCCCc
Q 017601 346 --SGSI----------FVADVVAKE 358 (369)
Q Consensus 346 --dg~I----------~iWd~~~~~ 358 (369)
|+.+ +++|+..++
T Consensus 409 skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 409 SKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CccccccCCCCCCCcceEEEcCCCc
Confidence 4431 788886554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00032 Score=70.74 Aligned_cols=152 Identities=6% Similarity=-0.038 Sum_probs=91.2
Q ss_pred eeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE------cCCeEEEEeCCcccCCcee
Q 017601 162 SMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT------EGCQLTIWDLRMKENGGCL 233 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s------~d~~v~iwD~~~~~~~~~~ 233 (369)
..++++ +.|+.|..+|.. +.+.......+......+...|.- .++.++.++ .++.|..||.+++ +.+
T Consensus 122 g~v~v~-~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG---~~~ 196 (689)
T 1yiq_A 122 GKVYVG-VLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYVTAYDAETG---KEA 196 (689)
T ss_dssp TEEEEE-CTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTC---CEE
T ss_pred CEEEEE-ccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEEEEEECCCC---cEE
Confidence 356666 689999999974 444444332011100011111100 133555543 2689999999998 555
Q ss_pred eeeecc-----------------------------CCCc-EEEEEECCCC-cEEEEeCCCc-------------------
Q 017601 234 HRICGS-----------------------------VGDI-LYAVCSSSTG-NIAVAGADRT------------------- 263 (369)
Q Consensus 234 ~~~~~~-----------------------------~~~~-v~~v~~sp~g-~lasgs~D~~------------------- 263 (369)
-++... .+.. -..++++|++ +++.+..+++
T Consensus 197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 443310 0001 1257888887 8888887764
Q ss_pred EEEEeCCCceeeeeccc--ccc-------CceEEEEEcCCCCC---EEEEEECCCeEEEEECcCCceeE
Q 017601 264 VTIYDPRRWSALSRWVH--CSK-------YEITGLSFSSIDSN---YIYVQGVDYEVFCGQWRESSKVF 320 (369)
Q Consensus 264 v~vwD~~~~~~~~~~~~--h~~-------~~v~~l~~sp~d~~---~l~s~s~D~~i~vwd~~~~~~~~ 320 (369)
|..||.++++.+-.++. | . .+........ +|+ .++.++.++.++++|.++++.+.
T Consensus 277 v~AlD~~TG~~~W~~~~~~~-d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 343 (689)
T 1yiq_A 277 IVAVNADTGEYVWHYQTTPG-DAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATGELLS 343 (689)
T ss_dssp EEEEETTTCCEEEEEESSTT-CCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred EEEEEccCCceeEeeecCCc-ccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCCCEec
Confidence 99999999988766543 2 1 1222223333 554 78889999999999999998764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00066 Score=59.43 Aligned_cols=188 Identities=12% Similarity=0.079 Sum_probs=114.4
Q ss_pred ccccCCccc--eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCce
Q 017601 85 MLNRCPHRS--EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 85 ~~~~~~H~~--~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 162 (369)
++...+|.. -.+.|.|+.+ .+..+...+|.|.++|+.++.. + . .. +.+.. .+ .++++.. +.
T Consensus 45 Vv~~~phd~~~ftqGL~~~~~-----~Ly~stG~~g~v~~iD~~Tgkv-~-~-~~-l~~~~--Fg----eGit~~g--~~ 107 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFHQG-----HFFESTGHQGTLRQLSLESAQP-V-W-ME-RLGNI--FA----EGLASDG--ER 107 (268)
T ss_dssp EEEEEECCTTCCEEEEEEETT-----EEEEEETTTTEEEECCSSCSSC-S-E-EE-ECTTC--CE----EEEEECS--SC
T ss_pred EEEEEcCCCccccceEEEECC-----EEEEEcCCCCEEEEEECCCCcE-E-e-EE-CCCCc--ce----eEEEEeC--CE
Confidence 333445653 3488999742 5667777788899988876521 1 1 12 22211 11 2466654 44
Q ss_pred eEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC
Q 017601 163 MAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
++... -.++.+.+||... .+.++... +...... +|+..|+.+..+++|.++|..+. +.+.++.-..
T Consensus 108 Ly~lt-w~~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt------~Dg~~L~vSdGs~~l~~iDp~T~---~v~~~I~V~~ 175 (268)
T 3nok_A 108 LYQLT-WTEGLLFTWSGMPPQRERTTRYS--GEGWGLC------YWNGKLVRSDGGTMLTFHEPDGF---ALVGAVQVKL 175 (268)
T ss_dssp EEEEE-SSSCEEEEEETTTTEEEEEEECS--SCCCCEE------EETTEEEEECSSSEEEEECTTTC---CEEEEEECEE
T ss_pred EEEEE-ccCCEEEEEECCcCcEEEEEeCC--CceeEEe------cCCCEEEEECCCCEEEEEcCCCC---eEEEEEEeCC
Confidence 55555 6789999999863 44444332 2212222 24556666656889999999988 6666655320
Q ss_pred ----CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc------------ccCceEEEEEcCCCCCEEEEE
Q 017601 241 ----GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC------------SKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 241 ----~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h------------~~~~v~~l~~sp~d~~~l~s~ 302 (369)
-..++.+.|. +| .++..-.+..|.+.|.++++.+..+.-. ..+-.+.|+++|...+++++|
T Consensus 176 ~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 176 RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 1246778877 77 4455446889999999999988765421 013568999999444455554
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00081 Score=60.40 Aligned_cols=184 Identities=11% Similarity=-0.017 Sum_probs=107.4
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG 231 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~ 231 (369)
++.+.++ + .+.++ +.++.|..||... ....+.. ....+... ..++ ++.+..++ +.|..|| .++ +
T Consensus 141 ~~~~~~~-g-~l~vg-t~~~~l~~~d~~g~~~~~~~~--~~~~~~~~---~~d~-~g~l~v~t--~~l~~~d-~~g---~ 205 (330)
T 3hxj_A 141 TPIVSED-G-TIYVG-SNDNYLYAINPDGTEKWRFKT--NDAITSAA---SIGK-DGTIYFGS--DKVYAIN-PDG---T 205 (330)
T ss_dssp CCEECTT-S-CEEEE-CTTSEEEEECTTSCEEEEEEC--SSCCCSCC---EECT-TCCEEEES--SSEEEEC-TTS---C
T ss_pred eeEEcCC-C-EEEEE-cCCCEEEEECCCCCEeEEEec--CCCceeee---EEcC-CCEEEEEe--CEEEEEC-CCC---c
Confidence 4555552 3 35555 6778999998762 2222221 11111111 1112 34555555 8899999 665 4
Q ss_pred eeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 232 CLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 232 ~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
.+..+... ...+.++++.++|.|..++.++.|..+|. +++.+..+... ...+.++.+.+ ++ .|..++.++.+..+
T Consensus 206 ~~~~~~~~-~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~-~~~~~~~~~~~-~g-~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 206 EKWNFYAG-YWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG-KRIESSPVIGN-TD-TIYFGSYDGHLYAI 280 (330)
T ss_dssp EEEEECCS-SCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECS-SCCCSCCEECT-TS-CEEEECTTCEEEEE
T ss_pred EEEEEccC-CcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC-CCccccceEcC-CC-eEEEecCCCCEEEE
Confidence 44444433 35688888999887777888888988884 55555555444 34445556655 55 45667788899999
Q ss_pred ECcCCceeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 312 QWRESSKVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 312 d~~~~~~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|. +++....+..... ...+....++. |..|+.+|.+++...+..+
T Consensus 281 d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 281 NP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp CT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred CC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 96 6666666643321 11222223454 5668999999998776543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00095 Score=58.37 Aligned_cols=190 Identities=10% Similarity=0.079 Sum_probs=113.7
Q ss_pred cccccCCccce--eeEEEEeecCCCCceEEEEEecCC--cEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC
Q 017601 84 SMLNRCPHRSE--VQSIALAETDSSGYMVLGSVDSYG--HLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS 159 (369)
Q Consensus 84 ~~~~~~~H~~~--V~~l~~s~~~~~~~~~las~d~~g--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 159 (369)
.+++..+|... .+.|.|+ ++ .+..|...+| .|+++|+.++.. + ....+.+. ..+ .++++.
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~----~LyestG~~g~S~v~~vD~~Tgkv-~--~~~~l~~~--~Fg----eGit~~-- 95 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NG----YFYESTGLNGRSSIRKVDIESGKT-L--QQIELGKR--YFG----EGISDW-- 95 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TT----EEEEEEEETTEEEEEEECTTTCCE-E--EEEECCTT--CCE----EEEEEE--
T ss_pred EEEEEecCCCCcccceEEEE-CC----EEEEECCCCCCceEEEEECCCCcE-E--EEEecCCc--cce----eEEEEe--
Confidence 44444566544 4899998 42 4555555555 888888876521 1 11112111 111 145554
Q ss_pred CceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee
Q 017601 160 QWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC 237 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~ 237 (369)
++.++... -.++.+.+||.. +.+.++.... ...... +|+..|+.+..+++|.++|..+. +.+.++.
T Consensus 96 g~~ly~lt-w~~~~v~v~D~~t~~~~~ti~~~~--eG~glt------~dg~~L~~SdGs~~i~~iDp~T~---~v~~~I~ 163 (262)
T 3nol_A 96 KDKIVGLT-WKNGLGFVWNIRNLRQVRSFNYDG--EGWGLT------HNDQYLIMSDGTPVLRFLDPESL---TPVRTIT 163 (262)
T ss_dssp TTEEEEEE-SSSSEEEEEETTTCCEEEEEECSS--CCCCEE------ECSSCEEECCSSSEEEEECTTTC---SEEEEEE
T ss_pred CCEEEEEE-eeCCEEEEEECccCcEEEEEECCC--CceEEe------cCCCEEEEECCCCeEEEEcCCCC---eEEEEEE
Confidence 34555555 678999999986 3444443321 212222 24556666555788999999988 6666655
Q ss_pred ccC----CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc-c----------cCceEEEEEcCCCCCEEEE
Q 017601 238 GSV----GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC-S----------KYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 238 ~~~----~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h-~----------~~~v~~l~~sp~d~~~l~s 301 (369)
... -..++.+.|. +| ..+..-.++.|.+.|.++++.+..+.-. + .+-.+.|+|+| +++.|..
T Consensus 164 V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp-~~~~lfV 241 (262)
T 3nol_A 164 VTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK-EHHRLFV 241 (262)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET-TTTEEEE
T ss_pred eccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC-CCCEEEE
Confidence 310 1345667776 67 4455546889999999999988765421 0 12458999999 7776666
Q ss_pred EE
Q 017601 302 QG 303 (369)
Q Consensus 302 ~s 303 (369)
.+
T Consensus 242 TG 243 (262)
T 3nol_A 242 TG 243 (262)
T ss_dssp EE
T ss_pred EC
Confidence 65
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00035 Score=62.84 Aligned_cols=176 Identities=13% Similarity=0.086 Sum_probs=109.1
Q ss_pred eEEEEecccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC
Q 017601 163 MAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~ 241 (369)
.+.++ +.++.+..+|.. ........ ....+... ...+ ++.+..++.++.|..||.. + +.+..+... .
T Consensus 109 ~l~v~-t~~~~l~~~d~~g~~~~~~~~--~~~~~~~~---~~~~-~g~l~vgt~~~~l~~~d~~-g---~~~~~~~~~-~ 176 (330)
T 3hxj_A 109 ILYVT-SMDGHLYAINTDGTEKWRFKT--KKAIYATP---IVSE-DGTIYVGSNDNYLYAINPD-G---TEKWRFKTN-D 176 (330)
T ss_dssp EEEEE-CTTSEEEEECTTSCEEEEEEC--SSCCCSCC---EECT-TSCEEEECTTSEEEEECTT-S---CEEEEEECS-S
T ss_pred EEEEE-ecCCEEEEEcCCCCEEEEEcC--CCceeeee---EEcC-CCEEEEEcCCCEEEEECCC-C---CEeEEEecC-C
Confidence 45555 678889999876 22222211 11111111 1112 4567778888999999988 6 555555443 3
Q ss_pred CcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 242 DILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 242 ~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
..+.++.+.+++.+..++ +.|..|| .+++.+..+... ...+.++...+ ++.+ ..++.++.+..+|. +++.+..
T Consensus 177 ~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~-~g~l-~v~t~~~gl~~~~~-~g~~~~~ 249 (330)
T 3hxj_A 177 AITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAG-YWTVTRPAISE-DGTI-YVTSLDGHLYAINP-DGTEKWR 249 (330)
T ss_dssp CCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCS-SCCCSCCEECT-TSCE-EEEETTTEEEEECT-TSCEEEE
T ss_pred CceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccC-CcceeceEECC-CCeE-EEEcCCCeEEEECC-CCCEeEE
Confidence 567777888888555555 7899999 777776666655 56788888888 7654 55667888888874 4555555
Q ss_pred EEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 322 FRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 322 ~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+..............+..|..++.+|.|+.+|. +++
T Consensus 250 ~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~ 285 (330)
T 3hxj_A 250 FKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGT 285 (330)
T ss_dssp EECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSC
T ss_pred eeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCc
Confidence 543331111111122456777888888999985 443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0033 Score=54.92 Aligned_cols=202 Identities=12% Similarity=-0.004 Sum_probs=115.6
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
.....++|++++ ..+..+-...+.|+.++.+.... ...+... -..-.+++++|.+..++++. ...+
T Consensus 36 ~~~~gi~~d~~~---~~ly~~d~~~~~I~~~~~~g~~~-----~~~~~~~-----~~~p~~ia~d~~~~~lyv~d-~~~~ 101 (267)
T 1npe_A 36 KVIIGLAFDCVD---KVVYWTDISEPSIGRASLHGGEP-----TTIIRQD-----LGSPEGIALDHLGRTIFWTD-SQLD 101 (267)
T ss_dssp EEEEEEEEETTT---TEEEEEETTTTEEEEEESSSCCC-----EEEECTT-----CCCEEEEEEETTTTEEEEEE-TTTT
T ss_pred CcEEEEEEecCC---CEEEEEECCCCEEEEEecCCCCc-----EEEEECC-----CCCccEEEEEecCCeEEEEE-CCCC
Confidence 356789998863 23444434467888888764311 0111100 01234799999666555555 6778
Q ss_pred eEEEEeCCcc-eEEEEe--eeCCcceeeeccCCCCCCCCcEEEEEc---CCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 173 SIDVYDQDIH-LRTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVTE---GCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 173 ~i~lwd~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s~---d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
.|.+++.+.. .+.+.. ...|..+.+. ++++.|..+.. .+.|..+++... ....+........+.
T Consensus 102 ~I~~~~~~g~~~~~~~~~~~~~P~~i~vd------~~~g~lyv~~~~~~~~~I~~~~~dg~----~~~~~~~~~~~~P~g 171 (267)
T 1npe_A 102 RIEVAKMDGTQRRVLFDTGLVNPRGIVTD------PVRGNLYWTDWNRDNPKIETSHMDGT----NRRILAQDNLGLPNG 171 (267)
T ss_dssp EEEEEETTSCSCEEEECSSCSSEEEEEEE------TTTTEEEEEECCSSSCEEEEEETTSC----CCEEEECTTCSCEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCccEEEEe------eCCCEEEEEECCCCCcEEEEEecCCC----CcEEEEECCCCCCcE
Confidence 8999987532 222211 1233344333 33455544433 368888887533 222222111256789
Q ss_pred EEECCCC-cE-EEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCceeEEEE
Q 017601 247 VCSSSTG-NI-AVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 247 v~~sp~g-~l-asgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~~~~~~~ 323 (369)
++++|++ .| ++-...+.|.++|+........+.+ ......+++ ++..|+.+. ..+.|..+|..+++.+..+.
T Consensus 172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~--~~~P~gi~~---d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTS---YGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC--CCSEEEEEE---ETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC--CCCceEEEE---eCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 9999986 44 5555678999999876443333332 223356654 345555544 56799999999888887774
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.03 E-value=7.8e-05 Score=72.68 Aligned_cols=182 Identities=10% Similarity=-0.073 Sum_probs=114.6
Q ss_pred eEEEEecccceEEEEeCCc--ceEEEEe--eeCCcceeeeccCCCCCCCCcEEEEE------------------cCCeEE
Q 017601 163 MAAVARSFSKSIDVYDQDI--HLRTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVT------------------EGCQLT 220 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~--~~~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s------------------~d~~v~ 220 (369)
++.++...+..|.+.|... ..+.+.. ...+..+.+..+ |++.++++++ .++.+.
T Consensus 103 ~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~----p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKW----PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCS----SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeec----CCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 3444447788899999864 3332221 123334443321 4566666653 256899
Q ss_pred EEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC-------------------------------------
Q 017601 221 IWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR------------------------------------- 262 (369)
Q Consensus 221 iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~------------------------------------- 262 (369)
+.|..+. +.+.++.-. +...-++++|+| ++++.+.+.
T Consensus 179 vID~~t~---~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 179 AVDADKW---EVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEETTTT---EEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred EEECCCC---eEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 9999987 677666643 344567899999 777666442
Q ss_pred -cEEEEeCCC--cee-eeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCc------------eeEEEEcC
Q 017601 263 -TVTIYDPRR--WSA-LSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESS------------KVFAFRGD 325 (369)
Q Consensus 263 -~v~vwD~~~--~~~-~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~------------~~~~~~g~ 325 (369)
.|.|.|.++ ++. +..+.. .....++.++| ||++++.++ .+.+|.++|+.+.+ ......--
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipv--g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPI--ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEE--ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred CcEEEEeCcccCCceeEEEEec--CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence 477888877 444 344432 23567899999 999877765 57899999998642 22222211
Q ss_pred CCeeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 326 SNWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 326 ~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
.+-..+...++|....+.--|++|.+||+.+
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 1113445567884455666799999999876
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.03 E-value=5e-05 Score=66.57 Aligned_cols=142 Identities=10% Similarity=-0.064 Sum_probs=96.6
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE--EEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccC
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA--VCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKY 284 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~--v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~ 284 (369)
+..+.+.+.++.|+.+|++++ +.++.+ .. ...+. +++..+-.....-.++.+.+||..+.+.+.++... .
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tg---kv~~~~-l~--~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~- 136 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESA---QPVWME-RL--GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-G- 136 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCS---SCSEEE-EC--TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS-S-
T ss_pred CEEEEEcCCCCEEEEEECCCC---cEEeEE-CC--CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-C-
Confidence 345556777889999999998 666665 33 33333 55543224444556889999999999999988743 2
Q ss_pred ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeee-----EcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFS-----KCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~-----~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.=..++ + |++.|+.+..+++|.++|..+.+.+..+.-..+-..+. .+.+|.+.+..-.+..|.+-|.++++.
T Consensus 137 eGwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 137 EGWGLC--Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTV 213 (268)
T ss_dssp CCCCEE--E-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBE
T ss_pred ceeEEe--c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcE
Confidence 223444 5 67777777678999999999988877774311001111 123787666666788999999999873
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0028 Score=54.88 Aligned_cols=190 Identities=14% Similarity=0.123 Sum_probs=113.4
Q ss_pred cccccCCcc--ceeeEEEEeecCCCCceEEEEEecCC--cEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC
Q 017601 84 SMLNRCPHR--SEVQSIALAETDSSGYMVLGSVDSYG--HLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS 159 (369)
Q Consensus 84 ~~~~~~~H~--~~V~~l~~s~~~~~~~~~las~d~~g--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 159 (369)
.++...+|. .-.+.|.|+++ .+..|...+| .|+.+|+.++.. .....+... ..+ .++++.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~~-----~LyestG~~g~S~v~~vD~~tgkv---~~~~~l~~~--~fg----eGi~~~-- 73 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLRG-----HLYESTGETGRSSVRKVDLETGRI---LQRAEVPPP--YFG----AGIVAW-- 73 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEETT-----EEEEEECCTTSCEEEEEETTTCCE---EEEEECCTT--CCE----EEEEEE--
T ss_pred EEEEEcCCCCccccccEEEECC-----EEEEECCCCCCceEEEEECCCCCE---EEEEeCCCC--cce----eEEEEe--
Confidence 444444665 44789999763 4555555544 788888876521 111112111 111 145554
Q ss_pred CceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee
Q 017601 160 QWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC 237 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~ 237 (369)
++.++... -.++.+.+||... .+.++.... ....... ++..|+.+..+++|.++|..+. +.+.++.
T Consensus 74 ~~~ly~lt-w~~~~v~v~D~~tl~~~~ti~~~~--~Gwglt~------dg~~L~vSdgs~~l~~iDp~t~---~~~~~I~ 141 (243)
T 3mbr_X 74 RDRLIQLT-WRNHEGFVYDLATLTPRARFRYPG--EGWALTS------DDSHLYMSDGTAVIRKLDPDTL---QQVGSIK 141 (243)
T ss_dssp TTEEEEEE-SSSSEEEEEETTTTEEEEEEECSS--CCCEEEE------CSSCEEEECSSSEEEEECTTTC---CEEEEEE
T ss_pred CCEEEEEE-eeCCEEEEEECCcCcEEEEEeCCC--CceEEee------CCCEEEEECCCCeEEEEeCCCC---eEEEEEE
Confidence 34455555 6789999999863 344443322 2222222 3556666556789999999987 6666655
Q ss_pred ccC----CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc------------ccCceEEEEEcCCCCCEEE
Q 017601 238 GSV----GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC------------SKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 238 ~~~----~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h------------~~~~v~~l~~sp~d~~~l~ 300 (369)
... -..++.+.|. +| .+|..-.+..|.+.|.++++.+..+.-. ..+-.+.|+++| +++.|.
T Consensus 142 V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~lf 219 (243)
T 3mbr_X 142 VTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA-EHDRLF 219 (243)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET-TTTEEE
T ss_pred EccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC-CCCEEE
Confidence 320 1356677766 66 4444446789999999999988765411 013468899999 666655
Q ss_pred EEE
Q 017601 301 VQG 303 (369)
Q Consensus 301 s~s 303 (369)
..+
T Consensus 220 VTG 222 (243)
T 3mbr_X 220 VTG 222 (243)
T ss_dssp EEE
T ss_pred EEC
Confidence 554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0001 Score=64.54 Aligned_cols=142 Identities=9% Similarity=0.001 Sum_probs=95.2
Q ss_pred CCcEEEEEcCC--eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cE-EEEeCCCcEEEEeCCCceeeeeccccc
Q 017601 207 GPNMLAVTEGC--QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NI-AVAGADRTVTIYDPRRWSALSRWVHCS 282 (369)
Q Consensus 207 ~~~lla~s~d~--~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~~~~~~~~~~~h~ 282 (369)
+..+.+.+.+| .|+.+|++++ +.++++... .........+++ .| ...-.++.+.+||..+.+.+.++...
T Consensus 53 ~~LyestG~~g~S~v~~vD~~Tg---kv~~~~~l~--~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~- 126 (262)
T 3nol_A 53 GYFYESTGLNGRSSIRKVDIESG---KTLQQIELG--KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD- 126 (262)
T ss_dssp TEEEEEEEETTEEEEEEECTTTC---CEEEEEECC--TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS-
T ss_pred CEEEEECCCCCCceEEEEECCCC---cEEEEEecC--CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC-
Confidence 44555666665 8999999999 777777654 444443333345 44 44446889999999999999888743
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC--C----CeeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD--S----NWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~--~----~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
.. =..+ ++ |++.|+.+..+++|.++|..+.+.+..+.-. . ....+. ..+|.+.+..-.+..|.+.|.++
T Consensus 127 ~e-G~gl--t~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe-~~~G~lyan~w~~~~I~vIDp~t 201 (262)
T 3nol_A 127 GE-GWGL--TH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE-WVDGEIFANVWQTNKIVRIDPET 201 (262)
T ss_dssp SC-CCCE--EE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE-EETTEEEEEETTSSEEEEECTTT
T ss_pred CC-ceEE--ec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE-EECCEEEEEEccCCeEEEEECCC
Confidence 21 1333 35 6666666555788999999998877776431 1 001122 23777666666789999999998
Q ss_pred Ccc
Q 017601 357 KEN 359 (369)
Q Consensus 357 ~~~ 359 (369)
++.
T Consensus 202 G~V 204 (262)
T 3nol_A 202 GKV 204 (262)
T ss_dssp CBE
T ss_pred CcE
Confidence 873
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=3.8e-05 Score=71.31 Aligned_cols=126 Identities=12% Similarity=-0.023 Sum_probs=87.8
Q ss_pred eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe----------CCCcEEEEeCCCceeeeecccc-----
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG----------ADRTVTIYDPRRWSALSRWVHC----- 281 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs----------~D~~v~vwD~~~~~~~~~~~~h----- 281 (369)
+|.++|..+. +.+.++... ..+ .++|+||+ +++++. .+++|.+||+.+++.+.++...
T Consensus 47 ~vsvID~~t~---~v~~~i~vG-~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~ 120 (368)
T 1mda_H 47 ENWVSCAGCG---VTLGHSLGA-FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEETTTT---EEEEEEEEC-TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred eEEEEECCCC---eEEEEEeCC-CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc
Confidence 8889999998 788888754 345 79999999 777765 3789999999999999887532
Q ss_pred -ccCceEEEEEcCCCCCEEEEEEC--CCeEEE--EECcCCceeEEEEcCCCeeeeeEcC-CCCEEEEEeCCCcEEEEECC
Q 017601 282 -SKYEITGLSFSSIDSNYIYVQGV--DYEVFC--GQWRESSKVFAFRGDSNWLGFSKCS-NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 282 -~~~~v~~l~~sp~d~~~l~s~s~--D~~i~v--wd~~~~~~~~~~~g~~~~~~~~~~~-d~~~l~sgs~dg~I~iWd~~ 355 (369)
.......++|+| ||++++.+.. +..+.+ +|..+ +..+.-... +...+ ....+++.+.||.+.+.|.+
T Consensus 121 ~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 121 SVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp CBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred ccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 012356899999 9999988875 467888 99877 333321110 00112 22345566667777777776
Q ss_pred C
Q 017601 356 A 356 (369)
Q Consensus 356 ~ 356 (369)
+
T Consensus 194 ~ 194 (368)
T 1mda_H 194 A 194 (368)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0011 Score=66.70 Aligned_cols=137 Identities=9% Similarity=0.031 Sum_probs=88.3
Q ss_pred eEEEEeCCcccCCceeeeeec--cC------CCcEEEEEECCCC----cEEEEeCCCcEEEEeCCCceeeeecccccc--
Q 017601 218 QLTIWDLRMKENGGCLHRICG--SV------GDILYAVCSSSTG----NIAVAGADRTVTIYDPRRWSALSRWVHCSK-- 283 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~--~~------~~~v~~v~~sp~g----~lasgs~D~~v~vwD~~~~~~~~~~~~h~~-- 283 (369)
.|.-+|.+++ +.+-.++. +. ..+.....+..+| .++.++.+|.+.++|.++++.+...... .
T Consensus 271 ~v~AlD~~tG---~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~-~~~ 346 (668)
T 1kv9_A 271 SILAIRPDTG---KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFG-KVT 346 (668)
T ss_dssp EEEEECTTTC---CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS-CCC
T ss_pred eEEEEcCCCC---ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccc-ccc
Confidence 4999999998 55544442 10 0222222333355 4888999999999999999887432211 0
Q ss_pred ----------Cc------------------------eEEEEEcCCCCCEEEEE---------------------------
Q 017601 284 ----------YE------------------------ITGLSFSSIDSNYIYVQ--------------------------- 302 (369)
Q Consensus 284 ----------~~------------------------v~~l~~sp~d~~~l~s~--------------------------- 302 (369)
.+ -..++++| +..+++..
T Consensus 347 w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 425 (668)
T 1kv9_A 347 WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGF 425 (668)
T ss_dssp SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCG
T ss_pred cccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-CCCEEEEeccccceEeeeeccccccccccccCccc
Confidence 00 01267778 55555431
Q ss_pred ---------ECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 303 ---------GVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 303 ---------s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
..++.|..||+.+++.+-.+..+..+.+......+.+++.++.|+.++.||.++++.
T Consensus 426 ~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 426 ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 134889999999998876665433222222223678889999999999999999874
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00023 Score=61.65 Aligned_cols=142 Identities=13% Similarity=-0.003 Sum_probs=93.6
Q ss_pred CcEEEEEcC--CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeecccccc
Q 017601 208 PNMLAVTEG--CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSK 283 (369)
Q Consensus 208 ~~lla~s~d--~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~ 283 (369)
..+.+.+.+ +.|+.+|++++ +.++++... .........+.+ .....-.++.+.+||..+.+.+.++... .
T Consensus 32 ~LyestG~~g~S~v~~vD~~tg---kv~~~~~l~--~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~-~ 105 (243)
T 3mbr_X 32 HLYESTGETGRSSVRKVDLETG---RILQRAEVP--PPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP-G 105 (243)
T ss_dssp EEEEEECCTTSCEEEEEETTTC---CEEEEEECC--TTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS-S
T ss_pred EEEEECCCCCCceEEEEECCCC---CEEEEEeCC--CCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC-C
Confidence 344455554 48999999998 777777654 333333333334 4444567899999999999999988754 2
Q ss_pred CceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeee-----EcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFS-----KCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~-----~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
. =..++ + ++..|+.+..+++|.++|..+.+.+..+.-..+-..+. .+.+|.+.+..-.+..|.+-|.++++
T Consensus 106 ~-Gwglt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 106 E-GWALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGK 181 (243)
T ss_dssp C-CCEEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCB
T ss_pred C-ceEEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCC
Confidence 2 23444 4 55655555568899999999988777774311001111 12377766666678899999999887
Q ss_pred c
Q 017601 359 N 359 (369)
Q Consensus 359 ~ 359 (369)
.
T Consensus 182 V 182 (243)
T 3mbr_X 182 V 182 (243)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0045 Score=55.77 Aligned_cols=188 Identities=11% Similarity=-0.003 Sum_probs=107.4
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEee---------------------eCCcceeeeccCCCCCCCCcE
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRTL---------------------WYPSSLNFVQNLSPVNGGPNM 210 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~---------------------~~~~~v~~~~~~~~~~~~~~l 210 (369)
+++|+++ ..++.++ ..++.|..||... ....+... ..+..+.+. ++++.|
T Consensus 23 ~i~~d~~-g~~l~v~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~------~~~g~l 94 (322)
T 2fp8_A 23 SFTFDST-NKGFYTS-VQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN------LQNNQL 94 (322)
T ss_dssp CEECCTT-CSSEEEE-CTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE------TTTTEE
T ss_pred EEEEcCC-CCEEEEE-cCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEc------CCCCcE
Confidence 5889885 4445555 6788899998753 33333211 012222222 223466
Q ss_pred EEEEcCCeEEEEeCCcccCCceeeeeec----cCCCcEEEEEECC-CC-cEEEEeC-----------------CCcEEEE
Q 017601 211 LAVTEGCQLTIWDLRMKENGGCLHRICG----SVGDILYAVCSSS-TG-NIAVAGA-----------------DRTVTIY 267 (369)
Q Consensus 211 la~s~d~~v~iwD~~~~~~~~~~~~~~~----~~~~~v~~v~~sp-~g-~lasgs~-----------------D~~v~vw 267 (369)
+.+...+.+..+|..++ . +..+.. ......+.+++.+ +| ..++-.. ++.|..|
T Consensus 95 ~v~d~~~~i~~~d~~~g---~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGG---H-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp EEEETTTEEEEECTTCE---E-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred EEEECCCCEEEEeCCCC---E-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 66655566888987654 1 222211 1023578899999 88 4333221 3678889
Q ss_pred eCCCceeeeeccccccCceEEEEEcCCCCCEEEEE-ECCCeEEEEECcCCc--eeEEEEcCCCeeeeeEcCCCCEEEEEe
Q 017601 268 DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ-GVDYEVFCGQWRESS--KVFAFRGDSNWLGFSKCSNRDVLGGWS 344 (369)
Q Consensus 268 D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~-s~D~~i~vwd~~~~~--~~~~~~g~~~~~~~~~~~d~~~l~sgs 344 (369)
|..+++...... . ......++|+| +++.|+.+ ...+.|..+|+.... ....+.....-.++...++|.+.++..
T Consensus 171 d~~~~~~~~~~~-~-~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 171 DPSTKETTLLLK-E-LHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNADGHFWVSSS 247 (322)
T ss_dssp ETTTTEEEEEEE-E-ESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECTTSCEEEEEE
T ss_pred eCCCCEEEEecc-C-CccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEECCCCCEEEEec
Confidence 987665432222 1 23457899999 99866554 556899999987521 111221111024555556788766655
Q ss_pred C----------CCcEEEEECC
Q 017601 345 D----------SGSIFVADVV 355 (369)
Q Consensus 345 ~----------dg~I~iWd~~ 355 (369)
. .+.|..+|..
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp EETTSSTTSCEEEEEEEECTT
T ss_pred CcccccccCCCccEEEEECCC
Confidence 4 4667777753
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.023 Score=55.84 Aligned_cols=136 Identities=7% Similarity=-0.082 Sum_probs=87.3
Q ss_pred eEEEEeCCcccCCceeeeeeccC---------CCcEEEEEECCCC----cEEEEeCCCcEEEEeCCCceeeeecccccc-
Q 017601 218 QLTIWDLRMKENGGCLHRICGSV---------GDILYAVCSSSTG----NIAVAGADRTVTIYDPRRWSALSRWVHCSK- 283 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~---------~~~v~~v~~sp~g----~lasgs~D~~v~vwD~~~~~~~~~~~~h~~- 283 (369)
.|..+|.+++ +.+-.++... ..++. +...++| .++.++.+|.+.++|.++++.+....-. .
T Consensus 273 ~v~Ald~~tG---~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~-~~ 347 (571)
T 2ad6_A 273 TIWGRDLDTG---MAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVD-PA 347 (571)
T ss_dssp EEEEEETTTC---CEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESS-TT
T ss_pred EEEEEecCCC---cEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeeccc-CC
Confidence 6899999988 5554443210 12222 2223466 3677889999999999998887654311 0
Q ss_pred ------------Cce--------------------------EEEEEcCCCCCEEEEEE----------------------
Q 017601 284 ------------YEI--------------------------TGLSFSSIDSNYIYVQG---------------------- 303 (369)
Q Consensus 284 ------------~~v--------------------------~~l~~sp~d~~~l~s~s---------------------- 303 (369)
.++ ..++|+| +..+++..+
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g 426 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVG 426 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-CCCEEEEEchhccccccccccccccCCcccc
Confidence 111 2457888 666666543
Q ss_pred ---------------CCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 304 ---------------VDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 304 ---------------~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.++.|..||..+++.+-.+.......+......+.+++.++.||.|+.||.++++.
T Consensus 427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 35789999999998876664332111111122467788899999999999999874
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.015 Score=53.04 Aligned_cols=194 Identities=13% Similarity=0.163 Sum_probs=116.5
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC----Cce--e-EEEEecc--cceEEEEeC
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS----QWS--M-AAVARSF--SKSIDVYDQ 179 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~----~~~--~-~a~~~s~--d~~i~lwd~ 179 (369)
.++.+.++.+-+.++|++.. .+. .+.. +...++.+-|. +.. + +++. -. +.+|++|++
T Consensus 41 s~ii~t~k~~gL~Vydl~G~--~l~----~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~-R~~~~n~l~vf~i 106 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDGK--MLH----SYNT-------GKLNNVDIRYDFPLNGKKVDIAAASN-RSEGKNTIEIYAI 106 (355)
T ss_dssp CEEEEEETTTEEEEEETTSC--EEE----EECC-------SCEEEEEEEEEEEETTEEEEEEEEEE-CSTTCCEEEEEEE
T ss_pred cEEEEEcCCCCEEEEcCCCc--EEE----EccC-------CCcccEEEecccccCCceEeEEEEeC-CCCCCCeEEEEEE
Confidence 45666677888999998522 111 1110 12334555441 111 2 2333 33 578999966
Q ss_pred C---cceEEEEe-------e-eCCcceeeeccCCCCCCCC--cEEEEEcCCeEEEEeCCccc----CCceeeeeeccCCC
Q 017601 180 D---IHLRTLRT-------L-WYPSSLNFVQNLSPVNGGP--NMLAVTEGCQLTIWDLRMKE----NGGCLHRICGSVGD 242 (369)
Q Consensus 180 ~---~~~~~~~~-------~-~~~~~v~~~~~~~~~~~~~--~lla~s~d~~v~iwD~~~~~----~~~~~~~~~~~~~~ 242 (369)
+ ..+..+.. . ..+..+..... +..+ +++....++.+..|++.... ..+.++++... .
T Consensus 107 Dp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~----~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--s 180 (355)
T 3amr_A 107 DGKNGTLQSMTDPDHPIATAINEVYGFTLYHS----QKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--S 180 (355)
T ss_dssp CTTTCCEEECSCTTSCEECCCSSCCCEEEEEC----TTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--S
T ss_pred CCCCCceeeccccccCcCCCCCCeeEEEEEec----CCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--C
Confidence 3 23333310 0 23334444331 3233 35556678999999984321 12567777765 7
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCC-----Cceeeeec-cccccCceEEEEE--cCCCCC-EEEEEE-CCCeEEEE
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPR-----RWSALSRW-VHCSKYEITGLSF--SSIDSN-YIYVQG-VDYEVFCG 311 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~-----~~~~~~~~-~~h~~~~v~~l~~--sp~d~~-~l~s~s-~D~~i~vw 311 (369)
.+-.|...+.. .|+.+-+|.-|..+|.+ +++.+..+ .+++...+..|++ .+ +++ +|++++ .+++..+|
T Consensus 181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vy 259 (355)
T 3amr_A 181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIY 259 (355)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEE
T ss_pred CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEE
Confidence 78888888877 99999999877777755 34555554 3454567888888 45 555 566655 57799999
Q ss_pred ECc-CCceeEEEE
Q 017601 312 QWR-ESSKVFAFR 323 (369)
Q Consensus 312 d~~-~~~~~~~~~ 323 (369)
|.+ +.+.+..|+
T Consensus 260 dr~~~~~~vg~f~ 272 (355)
T 3amr_A 260 DRQGKNKYVADFR 272 (355)
T ss_dssp ESSTTCCEEEEEE
T ss_pred ECCCCCcEEEEEE
Confidence 997 677777774
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.032 Score=51.83 Aligned_cols=203 Identities=9% Similarity=-0.042 Sum_probs=110.9
Q ss_pred ceeeEEEEeecCCCCceEEEEEe-cCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVD-SYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d-~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
.....++|++.+ ..|.-.| ..+.|+.++.+.... ...+.... ..-.++++.+.+..++.+- ...
T Consensus 116 ~~~~gl~~d~~~----~~ly~~D~~~~~I~r~~~~g~~~-----~~~~~~~~-----~~p~glavd~~~g~lY~~d-~~~ 180 (386)
T 3v65_B 116 ENAIALDFHHRR----ELVFWSDVTLDRILRANLNGSNV-----EEVVSTGL-----ESPGGLAVDWVHDKLYWTD-SGT 180 (386)
T ss_dssp SCEEEEEEETTT----TEEEEEETTTTEEEEEETTSCCE-----EEEECSSC-----SCCCCEEEETTTTEEEEEE-TTT
T ss_pred CccEEEEEecCC----CeEEEEeCCCCcEEEEecCCCCc-----EEEEeCCC-----CCccEEEEEeCCCeEEEEc-CCC
Confidence 346788998753 2444334 456777777654310 00011000 0112688988666655555 667
Q ss_pred ceEEEEeCCcce-EEEEe--eeCCcceeeeccCCCCCCCCcEEEEE-cC-CeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 172 KSIDVYDQDIHL-RTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVT-EG-CQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 172 ~~i~lwd~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s-~d-~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+.|.+.+.+... ..+.. ...|..+..- |.++.|..+. .. +.|..+|+... ....+........+.
T Consensus 181 ~~I~~~~~dg~~~~~l~~~~l~~P~giavd------p~~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~~~~~~PnG 250 (386)
T 3v65_B 181 SRIEVANLDGAHRKVLLWQSLEKPRAIALH------PMEGTIYWTDWGNTPRIEASSMDGS----GRRIIADTHLFWPNG 250 (386)
T ss_dssp TEEEECBTTSCSCEEEECSSCSCEEEEEEE------TTTTEEEEEECSSSCEEEEEETTSC----SCEEEECSSCSCEEE
T ss_pred CeEEEEeCCCCceEEeecCCCCCCcEEEEE------cCCCeEEEeccCCCCEEEEEeCCCC----CcEEEEECCCCCeee
Confidence 889988875332 22211 1233444433 2334443332 33 67888887643 222222111355789
Q ss_pred EEECCCC-cE-EEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 247 VCSSSTG-NI-AVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 247 v~~sp~g-~l-asgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
|+|+|++ .| .+-+..+.|..+|+........+... .....++++ . .+.++.+-...+.|..+|..+++....+.
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 251 LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITV-F-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-CSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-CCCceEEEE-E-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 9999876 44 45556778999998643222222222 334677887 3 45666666667889998866665555543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.026 Score=49.23 Aligned_cols=194 Identities=9% Similarity=0.047 Sum_probs=113.6
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCC-cceEEEEee--eCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCC
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTL--WYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLR 225 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~ 225 (369)
...+++|+|+++.++++. ..++.|...|.. +..+.+... .....+++.. ++.++.+. .++.+.++++.
T Consensus 28 ~lSGla~~~~~~~L~aV~-d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~-------~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTI-NKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIG-------DNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp CEEEEEEETTTTEEEEEE-ETTEEEEEEETTCCEEEEEECSSCSSEEEEEECS-------TTEEEEEETTTTEEEEEEEC
T ss_pred CcceeEEeCCCCEEEEEE-CCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeC-------CCEEEEEECCCCcEEEEEcC
Confidence 367999999777777776 668888888876 333333221 1334444443 23454444 46788899876
Q ss_pred cccCCceeeeeec-----cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCC---Cceeeeec-----c--ccccCceEEE
Q 017601 226 MKENGGCLHRICG-----SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPR---RWSALSRW-----V--HCSKYEITGL 289 (369)
Q Consensus 226 ~~~~~~~~~~~~~-----~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~---~~~~~~~~-----~--~h~~~~v~~l 289 (369)
.......+..... ......-.++|+|.+ .|.++.+.....||.+. ....+..+ . .+ .....++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~-~~d~S~l 178 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT-LDDVSGA 178 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC-SSCCCEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc-cCCceeE
Confidence 5421111222211 113456899999999 66666665555555543 11111111 1 13 3457899
Q ss_pred EEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE---cC-------CCeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 290 SFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR---GD-------SNWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 290 ~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~---g~-------~~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
++.|..+++++.....+.+..+|.+. +.+..+. +. ....++...++|+ |+..|+-+.++++.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 99996666676666778899999764 3444442 21 1224566666887 444588887777653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.64 E-value=0.032 Score=52.08 Aligned_cols=196 Identities=9% Similarity=-0.077 Sum_probs=111.4
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcc-----eEEEE--eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEe
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH-----LRTLR--TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWD 223 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~-----~~~~~--~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD 223 (369)
..+++|++.++.++.+- ...+.|..++.+.. ...+. ....+..+++-. ..+..+++-...+.|.+.|
T Consensus 114 ~~~l~~d~~~~~lywsD-~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~-----~~~~lY~~d~~~~~I~~~~ 187 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW-----IHSNIYWTDSVLGTVSVAD 187 (400)
T ss_dssp EEEEEEETTTTEEEEEE-TTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET-----TTTEEEEEETTTTEEEEEC
T ss_pred ceEEeeeeccCceEEEe-cCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe-----cCCceEEEECCCCeEEEEe
Confidence 45899998666555554 66788888886531 11111 111233333321 1122333444567899998
Q ss_pred CCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe--CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE
Q 017601 224 LRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG--ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs--~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
+... .....+... ......|++.|.+ .|+... ..+.|...++........+... -.....|+++| ++..|+
T Consensus 188 ~~g~---~~~~l~~~~-~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~-l~~P~glavd~-~~~~lY 261 (400)
T 3p5b_L 188 TKGV---KRKTLFREN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDL-LSGRLY 261 (400)
T ss_dssp TTTC---SEEEEEECS-SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS-CSCEEEEEEET-TTTEEE
T ss_pred CCCC---ceEEEEeCC-CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC-CCceEEEEEEe-CCCEEE
Confidence 8754 222223222 3568899999965 544443 2478888887643322222223 35678999998 666665
Q ss_pred EE-ECCCeEEEEECcCCceeEEEEcCC---CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 301 VQ-GVDYEVFCGQWRESSKVFAFRGDS---NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 301 s~-s~D~~i~vwd~~~~~~~~~~~g~~---~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.+ +..+.|...|+..........+.. .-.++.. ..+.++.+-...+.|..+|..+++.
T Consensus 262 ~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 262 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCC
T ss_pred EEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCc
Confidence 55 456789999987644333333211 0123332 2445666777788999999777653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.031 Score=51.89 Aligned_cols=194 Identities=9% Similarity=-0.066 Sum_probs=111.4
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcc-eEEEEe--eeCCcceeeeccCCCCCCCCcE-EEEEcCCeEEEEeCCc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH-LRTLRT--LWYPSSLNFVQNLSPVNGGPNM-LAVTEGCQLTIWDLRM 226 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~~~l-la~s~d~~v~iwD~~~ 226 (369)
..+++|++.+..++.+- ...+.|..++.+.. ...+.. ...+..+.+-. .++.| ++-...+.|.+.++..
T Consensus 118 ~~gl~~d~~~~~ly~~D-~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~------~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 118 AIALDFHHRRELVFWSD-VTLDRILRANLNGSNVEEVVSTGLESPGGLAVDW------VHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp EEEEEEETTTTEEEEEE-TTTTEEEEEETTSCCEEEEECSSCSCCCCEEEET------TTTEEEEEETTTTEEEECBTTS
T ss_pred cEEEEEecCCCeEEEEe-CCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEe------CCCeEEEEcCCCCeEEEEeCCC
Confidence 44899998666555554 67788999987532 222211 12344444432 23333 4444567888888764
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cE-EEEeCC-CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE-EE
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NI-AVAGAD-RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY-VQ 302 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~l-asgs~D-~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~-s~ 302 (369)
. .....+... ....+.++++|.+ .| .+-... +.|..+|+............ -...+.|+|+| ++..|+ +-
T Consensus 191 ~---~~~~l~~~~-l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-~~~PnGlavd~-~~~~lY~aD 264 (386)
T 3v65_B 191 A---HRKVLLWQS-LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-LFWPNGLTIDY-AGRRMYWVD 264 (386)
T ss_dssp C---SCEEEECSS-CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CSCEEEEEEEG-GGTEEEEEE
T ss_pred C---ceEEeecCC-CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC-CCCeeeEEEeC-CCCEEEEEE
Confidence 3 222222222 3567899999876 44 444444 78888887643222222222 34578999998 555554 44
Q ss_pred ECCCeEEEEECcCCceeEEEEcC-CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 303 GVDYEVFCGQWRESSKVFAFRGD-SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~~~~g~-~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+..+.|..+|+........+... ..-.++.. .++.++.+-...+.|..++..+++
T Consensus 265 ~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 265 AKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp TTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 55678999998754333333211 11134443 345566677778889888865654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.037 Score=50.62 Aligned_cols=191 Identities=8% Similarity=-0.073 Sum_probs=111.2
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEe--eeCCcceeeeccCCCCCCCCcE-EEEEcCCeEEEEeCCc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRT--LWYPSSLNFVQNLSPVNGGPNM-LAVTEGCQLTIWDLRM 226 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l-la~s~d~~v~iwD~~~ 226 (369)
..+++|++.+..++.+- ...+.|..++.+. ....+.. ...+..+.+-. .++.| ++-...+.|.+.++..
T Consensus 75 ~~~l~~d~~~~~ly~~D-~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~------~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 75 AIALDFHHRRELVFWSD-VTLDRILRANLNGSNVEEVVSTGLESPGGLAVDW------VHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp EEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEET------TTTEEEEEETTTTEEEEEETTS
T ss_pred eEEEEEeccccEEEEEe-ccCCceEEEecCCCCceEEEeCCCCCccEEEEec------CCCeEEEEcCCCCeEEEEcCCC
Confidence 34799998666555554 6778898888753 2222211 12344444432 23333 4444567899999875
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCC-CcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEE
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGAD-RTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D-~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
. .....+... ....+.++++|.+ ++.+-... +.|..+++... ....+. .. -.....|+|+| ++..|+.+
T Consensus 148 ~---~~~~l~~~~-l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~-~~~PnGla~d~-~~~~lY~a 220 (349)
T 3v64_C 148 A---HRKVLLWQS-LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTH-LFWPNGLTIDY-AGRRMYWV 220 (349)
T ss_dssp C---SCEEEECTT-CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSS-CSCEEEEEEET-TTTEEEEE
T ss_pred C---ceEEEEeCC-CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECC-CCCcceEEEeC-CCCEEEEE
Confidence 4 222222222 3567899999965 44444444 78888887643 333332 22 34578999998 55555544
Q ss_pred -ECCCeEEEEECcCCceeEEEEc---CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 303 -GVDYEVFCGQWRESSKVFAFRG---DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 303 -s~D~~i~vwd~~~~~~~~~~~g---~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+..+.|..+|+........+.. +. .++.. .++.+.++-...+.|...+..+++
T Consensus 221 D~~~~~I~~~~~dG~~~~~~~~~~~~~P--~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 221 DAKHHVIERANLDGSHRKAVISQGLPHP--FAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp ETTTTEEEEEETTSCSCEEEECSSCSSE--EEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCEEEEEeCCCCceEEEEeCCCCCc--eEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 4567899999875433332321 22 34443 345566666677888888865554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.043 Score=49.33 Aligned_cols=192 Identities=9% Similarity=-0.053 Sum_probs=110.0
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCCc-----ceEEEE--eeeCCcceeeeccCCCCCCCCcE-EEEEcCCeEEEEe
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQDI-----HLRTLR--TLWYPSSLNFVQNLSPVNGGPNM-LAVTEGCQLTIWD 223 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-----~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l-la~s~d~~v~iwD 223 (369)
.+++|++.++.++.+- ...+.|..++.+. ....+. ....+..+.+-. .++.| ++-...+.|.+.|
T Consensus 33 ~g~~~d~~~~~ly~~D-~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~------~~~~ly~~d~~~~~I~~~~ 105 (316)
T 1ijq_A 33 VALDTEVASNRIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW------IHSNIYWTDSVLGTVSVAD 105 (316)
T ss_dssp EEEEEETTTTEEEEEE-TTTTEEEEEEC--------CEEEECSSCSCCCEEEEET------TTTEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCEEEEEE-CCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee------cCCeEEEEECCCCEEEEEe
Confidence 4799998666555555 6778999998753 112221 112344444321 13333 4445578899999
Q ss_pred CCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-C-CcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEE
Q 017601 224 LRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-D-RTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYI 299 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D-~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l 299 (369)
+... .....+... ......++++|.+ .|..+.. . +.|..+++.. +....+. .. -.....++++| ++..|
T Consensus 106 ~~g~---~~~~~~~~~-~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~-~~~P~gla~d~-~~~~l 178 (316)
T 1ijq_A 106 TKGV---KRKTLFREN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTEN-IQWPNGITLDL-LSGRL 178 (316)
T ss_dssp TTSS---SEEEEEECT-TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSS-CSCEEEEEEET-TTTEE
T ss_pred CCCC---ceEEEEECC-CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECC-CCCceEEEEec-cCCEE
Confidence 8643 222222222 3567899999866 4444443 3 6888888753 3333322 22 34578999999 66665
Q ss_pred EEE-ECCCeEEEEECcCCceeEEEEcC---CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 300 YVQ-GVDYEVFCGQWRESSKVFAFRGD---SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 300 ~s~-s~D~~i~vwd~~~~~~~~~~~g~---~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+.+ +..+.|..+|+............ ..-.++.. ..+.++++-...+.|..++..+++
T Consensus 179 Y~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav-~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEE-ECCEEEEEECCCCeEEEEeCCCCc
Confidence 554 45679999999753332222221 11133433 245566666677899999877665
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.001 Score=66.60 Aligned_cols=194 Identities=6% Similarity=-0.080 Sum_probs=101.9
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEE-EEeeeCC---cceeeeccCCCCCCCCcEEEEE-cC-----CeEEEE
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRT-LRTLWYP---SSLNFVQNLSPVNGGPNMLAVT-EG-----CQLTIW 222 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~-~~~~~~~---~~v~~~~~~~~~~~~~~lla~s-~d-----~~v~iw 222 (369)
++++.+ ++.++++++..+..+.+||....... +.....+ ..+..+ +++..++.++ .+ ..+.+|
T Consensus 247 ~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~------~dg~iyv~GG~~~~~~~~~~~e~y 319 (656)
T 1k3i_A 247 GISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM------SDGRVFTIGGSWSGGVFEKNGEVY 319 (656)
T ss_dssp EEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC------TTSCEEEECCCCCSSSCCCCEEEE
T ss_pred cccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEe------cCCeEEEEeCcccCCcccccceEe
Confidence 467777 45677777445678999997643222 1111111 111222 2344555555 33 579999
Q ss_pred eCCcccCCceeeeeec----cCCCcEEEEEECCCC-cEEEEeCC---------CcEEEEeCCCceeeeecccccc-----
Q 017601 223 DLRMKENGGCLHRICG----SVGDILYAVCSSSTG-NIAVAGAD---------RTVTIYDPRRWSALSRWVHCSK----- 283 (369)
Q Consensus 223 D~~~~~~~~~~~~~~~----~~~~~v~~v~~sp~g-~lasgs~D---------~~v~vwD~~~~~~~~~~~~h~~----- 283 (369)
|..+. +... +.. .....-....+..++ .++.|+.| ..+..||..+.........+ .
T Consensus 320 d~~t~---~W~~-~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~-~~~~~~ 394 (656)
T 1k3i_A 320 SPSSK---TWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR-QSNRGV 394 (656)
T ss_dssp ETTTT---EEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEEC-EETTEE
T ss_pred CCCCC---ccee-CCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcc-cccccc
Confidence 99875 3221 100 000000001223445 44555444 45788898775433222211 1
Q ss_pred ----CceEEEEEcCCCCCEEEEEECCC-----------eEEEEECcCCceeEEE--EcC-CC-eeeeeEcCCCCEEEEEe
Q 017601 284 ----YEITGLSFSSIDSNYIYVQGVDY-----------EVFCGQWRESSKVFAF--RGD-SN-WLGFSKCSNRDVLGGWS 344 (369)
Q Consensus 284 ----~~v~~l~~sp~d~~~l~s~s~D~-----------~i~vwd~~~~~~~~~~--~g~-~~-~~~~~~~~d~~~l~sgs 344 (369)
..-.++.|...++++++.||.+. .|.+||..+....... ..+ .+ +......+++++++.|+
T Consensus 395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG 474 (656)
T 1k3i_A 395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 474 (656)
T ss_dssp CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECC
Confidence 12345556544778888888543 6788888775543332 111 11 12223356899999888
Q ss_pred CC-----------CcEEEEECCCCc
Q 017601 345 DS-----------GSIFVADVVAKE 358 (369)
Q Consensus 345 ~d-----------g~I~iWd~~~~~ 358 (369)
.+ ..+.+||.++.+
T Consensus 475 ~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 475 QRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp BSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred cccCcCcCCCCcccceEEEcCCCCc
Confidence 65 568999987654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.051 Score=48.42 Aligned_cols=186 Identities=11% Similarity=-0.030 Sum_probs=104.3
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEE-EeeeCCcceeeeccCCCCCCCCcEEEEEcC--CeEEEEeCCcccC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTL-RTLWYPSSLNFVQNLSPVNGGPNMLAVTEG--CQLTIWDLRMKEN 229 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~lla~s~d--~~v~iwD~~~~~~ 229 (369)
+++|+++ ..++++. ..++.|..||........ .....+..+.+ ++++..+++.... ..|..+|..++
T Consensus 36 gia~~~~-g~lyv~d-~~~~~I~~~d~~g~~~~~~~~~~~p~gia~------~~dG~l~vad~~~~~~~v~~~d~~~g-- 105 (306)
T 2p4o_A 36 NLASAPD-GTIFVTN-HEVGEIVSITPDGNQQIHATVEGKVSGLAF------TSNGDLVATGWNADSIPVVSLVKSDG-- 105 (306)
T ss_dssp EEEECTT-SCEEEEE-TTTTEEEEECTTCCEEEEEECSSEEEEEEE------CTTSCEEEEEECTTSCEEEEEECTTS--
T ss_pred eEEECCC-CCEEEEe-CCCCeEEEECCCCceEEEEeCCCCceeEEE------cCCCcEEEEeccCCcceEEEEcCCCC--
Confidence 7999994 4455554 678899999875433222 11112233332 2455544443322 24667777665
Q ss_pred CceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCce--eee--------eccccccCceEEEEEcCCCCCE
Q 017601 230 GGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS--ALS--------RWVHCSKYEITGLSFSSIDSNY 298 (369)
Q Consensus 230 ~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~--~~~--------~~~~h~~~~v~~l~~sp~d~~~ 298 (369)
+...............+++.+++ .+++-..++.|.++|..+++ ... ..... -.....+ +| +++.
T Consensus 106 -~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~-~~~pngi--s~-dg~~ 180 (306)
T 2p4o_A 106 -TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV-FPAANGL--KR-FGNF 180 (306)
T ss_dssp -CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC-SCSEEEE--EE-ETTE
T ss_pred -eEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCC-CCcCCCc--Cc-CCCE
Confidence 33221221112344666666666 55555568899999987542 210 01111 1234555 78 7776
Q ss_pred EEE-EECCCeEEEEECcC-Cce--eEEEE--cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 299 IYV-QGVDYEVFCGQWRE-SSK--VFAFR--GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 299 l~s-~s~D~~i~vwd~~~-~~~--~~~~~--g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
|+. -...++|..+|+.. ++. ...+. ... .++...++|.++++-...+.|.++|..
T Consensus 181 lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P--~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 181 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI--DDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC--SSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred EEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC--CCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 554 45578999999875 321 12221 122 345556688888887788999999875
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.076 Score=52.36 Aligned_cols=137 Identities=8% Similarity=-0.068 Sum_probs=85.4
Q ss_pred CeEEEEeCCcccCCceeeeeeccC---------CCcEEEEEEC-CCC----cEEEEeCCCcEEEEeCCCceeeeeccccc
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSV---------GDILYAVCSS-STG----NIAVAGADRTVTIYDPRRWSALSRWVHCS 282 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~---------~~~v~~v~~s-p~g----~lasgs~D~~v~vwD~~~~~~~~~~~~h~ 282 (369)
+.|.-+|.+++ +.+-.++... ..++. +... .+| .++.++.+|.+.++|.++++.+....-..
T Consensus 278 ~sv~Ald~~TG---~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~ 353 (599)
T 1w6s_A 278 MTIFGRDADTG---EAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDD 353 (599)
T ss_dssp SEEEEEETTTC---CEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred ceEEEEeCCCC---ceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccC
Confidence 37999999998 5554444210 01222 2222 456 46678899999999999998875443110
Q ss_pred ------------cCce--------------------------EEEEEcCCCCCEEEEEE---------------------
Q 017601 283 ------------KYEI--------------------------TGLSFSSIDSNYIYVQG--------------------- 303 (369)
Q Consensus 283 ------------~~~v--------------------------~~l~~sp~d~~~l~s~s--------------------- 303 (369)
..++ ..++++| +.++++...
T Consensus 354 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~ 432 (599)
T 1w6s_A 354 TVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-KRELFFMGINHICMDWEPFMLPYKAGQFFV 432 (599)
T ss_dssp TCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-CCCEEEEeccccceeeecccccccCCccee
Confidence 0011 2456777 555554421
Q ss_pred ------------------CCCeEEEEECcCCceeEEEE-cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 304 ------------------VDYEVFCGQWRESSKVFAFR-GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 304 ------------------~D~~i~vwd~~~~~~~~~~~-g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.++.+..||+.+++.+-.+. +...+.+. ....+.+++.++.||.++.||.++|+.
T Consensus 433 g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~-~~tagg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 433 GATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGT-MATAGDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp CEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBC-EEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcc-eEecCCEEEEECCCCeEEEEECCCCCE
Confidence 34789999999988766654 22211111 112567888899999999999999974
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.052 Score=53.54 Aligned_cols=152 Identities=9% Similarity=-0.026 Sum_probs=86.7
Q ss_pred EEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc------CCeEEEEeCCcccCCceeee
Q 017601 164 AAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE------GCQLTIWDLRMKENGGCLHR 235 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~------d~~v~iwD~~~~~~~~~~~~ 235 (369)
+.++ +.|+.+.-+|.. +.+............ .+...|.- .++.++.++. ++.|.-+|.+++ +.+-+
T Consensus 124 V~v~-t~dg~l~AlDa~TG~~~W~~~~~~~~~~~-~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG---~~~W~ 197 (599)
T 1w6s_A 124 ILKT-QLDGNVAALNAETGETVWKVENSDIKVGS-TLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTG---EQVWR 197 (599)
T ss_dssp EEEE-CTTSEEEEEETTTCCEEEEEECCCGGGTC-BCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTC---CEEEE
T ss_pred EEEE-cCCCEEEEEECCCCCEEEeecCCCCCccc-eeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCC---cEEEE
Confidence 5566 678888888864 444333221110000 00000100 1345555442 789999999998 55544
Q ss_pred eeccCCC------------------------------------cE-EEEEECCCC-cEEEEeCC----------------
Q 017601 236 ICGSVGD------------------------------------IL-YAVCSSSTG-NIAVAGAD---------------- 261 (369)
Q Consensus 236 ~~~~~~~------------------------------------~v-~~v~~sp~g-~lasgs~D---------------- 261 (369)
+...... .+ ...++.++. +++.+..+
T Consensus 198 ~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~ 277 (599)
T 1w6s_A 198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWT 277 (599)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred EcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcccc
Confidence 4322000 01 134566666 66666655
Q ss_pred CcEEEEeCCCceeeeeccccc-c--------CceEEEEEc-CCCC---CEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 262 RTVTIYDPRRWSALSRWVHCS-K--------YEITGLSFS-SIDS---NYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 262 ~~v~vwD~~~~~~~~~~~~h~-~--------~~v~~l~~s-p~d~---~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
.+|..+|.++++.+-.++... . .++. +... . +| ..++.++.++.+.++|.++++.+-.+.
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 389999999998876554220 1 1122 2332 3 67 467778899999999999988776654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.013 Score=59.65 Aligned_cols=241 Identities=12% Similarity=0.058 Sum_probs=119.3
Q ss_pred eeeEEEEe-ecCCCCceEEEEEecCCc----EEEEEecCC-CCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 94 EVQSIALA-ETDSSGYMVLGSVDSYGH----LIVSKLDTS-GKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 94 ~V~~l~~s-~~~~~~~~~las~d~~g~----v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
.+...+|| ||+ ..+..+.+..|. |+++|+.++ .. +.. .+. ....+++|+|++..++.+.
T Consensus 175 ~~~~~~~S~PDG---~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~---~~~--------~~~~~~~WspDg~~l~y~~ 239 (751)
T 2xe4_A 175 DVMEVKPAPPEH---DLVAFSVDMSGNEVYTIEFKRISDPSQT-IAD---KVS--------GTNGEIVWGPDHTSLFYVT 239 (751)
T ss_dssp EEEEEEECTTTT---CEEEEEEESSSSSCEEEEEEETTCTTCC-CCC---CEE--------EECSCCEECSSTTEEEEEE
T ss_pred EEeeeEecCCCC---CEEEEEEeCCCCceEEEEEEECCCCCEe-CCc---ccc--------CceeeEEEecCCCEEEEEE
Confidence 67789999 985 344456665553 999998765 21 111 010 0123689999766555543
Q ss_pred eccc-----ceEEEEeCCcce---EEEEeeeCCcceeeeccCCCCCCCCcEEEEEc---CCeEEEEeCCcccCCce-eee
Q 017601 168 RSFS-----KSIDVYDQDIHL---RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE---GCQLTIWDLRMKENGGC-LHR 235 (369)
Q Consensus 168 ~s~d-----~~i~lwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~---d~~v~iwD~~~~~~~~~-~~~ 235 (369)
.+ ..|.+++++... ..+............ .+++|+..|+..+. ...|.++|+.++.. .. +..
T Consensus 240 --~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~---~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~ 313 (751)
T 2xe4_A 240 --KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFM---YKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEI 313 (751)
T ss_dssp --ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEE---EECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEE
T ss_pred --ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEE---EECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEE
Confidence 33 357777765321 111111111111111 23466766666553 34688899886521 12 133
Q ss_pred eeccCCCcEEEEEECCCC-cEEEEeCC----CcEEEEeCCCceeeee-ccccccC--ceEEEEEcCCCCCEEEEEECCCe
Q 017601 236 ICGSVGDILYAVCSSSTG-NIAVAGAD----RTVTIYDPRRWSALSR-WVHCSKY--EITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 236 ~~~~~~~~v~~v~~sp~g-~lasgs~D----~~v~vwD~~~~~~~~~-~~~h~~~--~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
+........+++.|+..+ +++....+ ..|..+|+.+...... +..+ .. .+..+.+. .+.++++...|+.
T Consensus 314 l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~-~~~~~l~~~~~~--~~~lv~~~~~~g~ 390 (751)
T 2xe4_A 314 VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH-SEDVFMESIAVR--SNYLVVAGRRAGL 390 (751)
T ss_dssp SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC-CSSEEEEEEEEC--SSEEEEEEEETTE
T ss_pred eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC-CCCcEEEEEEEE--CCEEEEEEEeCCE
Confidence 332213566777766555 44444443 3566677764322223 3334 33 34455543 2345566667775
Q ss_pred --EEEEEC-------cCCceeEEE--EcCCCeeeeeE----cCC-CCEEEEEeCC---CcEEEEECCCCc
Q 017601 308 --VFCGQW-------RESSKVFAF--RGDSNWLGFSK----CSN-RDVLGGWSDS---GSIFVADVVAKE 358 (369)
Q Consensus 308 --i~vwd~-------~~~~~~~~~--~g~~~~~~~~~----~~d-~~~l~sgs~d---g~I~iWd~~~~~ 358 (369)
+.++|+ ..++....+ .+.....++.. ..+ +.++++.+.. ..++.+|+.+++
T Consensus 391 ~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 391 TRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp EEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred EEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 555664 333312222 22211122211 123 3455555443 467777877664
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.097 Score=51.28 Aligned_cols=153 Identities=7% Similarity=-0.104 Sum_probs=87.0
Q ss_pred eEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc------CCeEEEEeCCcccCCceee
Q 017601 163 MAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE------GCQLTIWDLRMKENGGCLH 234 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~------d~~v~iwD~~~~~~~~~~~ 234 (369)
.+.++ +.|+.+..+|.. +.+.......+.... .+...|.- .++.++.++. ++.|..+|.+++ +.+-
T Consensus 117 ~v~v~-~~dg~l~alD~~tG~~~W~~~~~~~~~~~-~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG---~~~W 190 (571)
T 2ad6_A 117 QIVKK-QANGHLLALDAKTGKINWEVEVCDPKVGS-TLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTG---ELKW 190 (571)
T ss_dssp EEEEE-CTTSEEEEEETTTCCEEEEEECCCGGGTC-BCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTC---CEEE
T ss_pred EEEEE-eCCCEEEEEECCCCCEEEEecCCCCCccc-eeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCC---cEEE
Confidence 45555 678899999864 444433322111000 01111100 1346666554 789999999998 5554
Q ss_pred eeeccCC------------------------------------CcE-EEEEECCCC-cEEEEeCC---------------
Q 017601 235 RICGSVG------------------------------------DIL-YAVCSSSTG-NIAVAGAD--------------- 261 (369)
Q Consensus 235 ~~~~~~~------------------------------------~~v-~~v~~sp~g-~lasgs~D--------------- 261 (369)
++..... ..+ ..+++.++. .+..+..+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 4432100 000 135666765 66555532
Q ss_pred -CcEEEEeCCCceeeeeccc--cc-------cCceEEEEEcCCCCC---EEEEEECCCeEEEEECcCCceeEEEE
Q 017601 262 -RTVTIYDPRRWSALSRWVH--CS-------KYEITGLSFSSIDSN---YIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 262 -~~v~vwD~~~~~~~~~~~~--h~-------~~~v~~l~~sp~d~~---~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
++|..+|.++++.+-.++. |- ..++. +...+ +|+ .++.++.++.+.++|..+++.+-.+.
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence 3699999999988765542 20 11221 23334 664 57778889999999999988776654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.081 Score=48.28 Aligned_cols=201 Identities=8% Similarity=-0.053 Sum_probs=109.4
Q ss_pred eeeEEEEeecCCCCceEEEEEe-cCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 94 EVQSIALAETDSSGYMVLGSVD-SYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d-~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
....++|++.+ ..|.-.| ..+.|+.++.+.... ...+.... ..-.++++.+.+..++.+- ...+
T Consensus 74 ~~~~l~~d~~~----~~ly~~D~~~~~I~r~~~~g~~~-----~~~~~~~~-----~~p~glavd~~~g~ly~~d-~~~~ 138 (349)
T 3v64_C 74 NAIALDFHHRR----ELVFWSDVTLDRILRANLNGSNV-----EEVVSTGL-----ESPGGLAVDWVHDKLYWTD-SGTS 138 (349)
T ss_dssp CEEEEEEETTT----TEEEEEETTTTEEEEEETTSCSC-----EEEECSSC-----SCCCEEEEETTTTEEEEEE-TTTT
T ss_pred ceEEEEEeccc----cEEEEEeccCCceEEEecCCCCc-----eEEEeCCC-----CCccEEEEecCCCeEEEEc-CCCC
Confidence 46788998753 2444444 456777777654311 01111000 0113799988666665555 6678
Q ss_pred eEEEEeCCcceEEEEe---eeCCcceeeeccCCCCCCCCcEEEE-EcC-CeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 173 SIDVYDQDIHLRTLRT---LWYPSSLNFVQNLSPVNGGPNMLAV-TEG-CQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 173 ~i~lwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~lla~-s~d-~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
.|.+.+.+...+.... ...|..+..- |.++.|..+ ... +.|..+|+... ....+........+.+
T Consensus 139 ~I~~~~~dG~~~~~l~~~~l~~P~~iavd------p~~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~~~~~~PnGl 208 (349)
T 3v64_C 139 RIEVANLDGAHRKVLLWQSLEKPRAIALH------PMEGTIYWTDWGNTPRIEASSMDGS----GRRIIADTHLFWPNGL 208 (349)
T ss_dssp EEEEEETTSCSCEEEECTTCSCEEEEEEE------TTTTEEEEEECSSSCEEEEEETTSC----SCEESCCSSCSCEEEE
T ss_pred eEEEEcCCCCceEEEEeCCCCCcceEEEe------cCcCeEEEeccCCCCEEEEEeCCCC----CcEEEEECCCCCcceE
Confidence 8999987643222211 1234444433 223343333 234 67888887643 2222211113567899
Q ss_pred EECCCC-cE-EEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 248 CSSSTG-NI-AVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 248 ~~sp~g-~l-asgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
+|+|++ .| .+-...+.|..+|+........+... .....++++ . .+.++.+-...+.|...|..+++....+
T Consensus 209 a~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 209 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITV-F-EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-CCCceEEEE-E-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 999876 44 44456778999998643222222222 334577777 3 4556666666778888886555444443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.012 Score=58.86 Aligned_cols=149 Identities=12% Similarity=0.174 Sum_probs=96.0
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECC---CCcEEEEeC------CCcEEEEeCCCceeeee
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSS---TGNIAVAGA------DRTVTIYDPRRWSALSR 277 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp---~g~lasgs~------D~~v~vwD~~~~~~~~~ 277 (369)
++.++.++.|+.|..+|.+++ +.+-++..........+..+| ++.++++.. ++.|..+|.++++.+-+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG---~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTG---KAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTC---CEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCC---CEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 457777888999999999998 555444331000001111111 455555543 58999999999988765
Q ss_pred ccc--ccc----------------------------CceEEEEEcCCCCCEEEEEECCC-------------------eE
Q 017601 278 WVH--CSK----------------------------YEITGLSFSSIDSNYIYVQGVDY-------------------EV 308 (369)
Q Consensus 278 ~~~--h~~----------------------------~~v~~l~~sp~d~~~l~s~s~D~-------------------~i 308 (369)
+.. ... .....+++.| +..+++.++.++ .|
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 531 000 0112468888 777888887665 49
Q ss_pred EEEECcCCceeEEEEc--CCCee-------eeeE-cCCCC---EEEEEeCCCcEEEEECCCCcc
Q 017601 309 FCGQWRESSKVFAFRG--DSNWL-------GFSK-CSNRD---VLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 309 ~vwd~~~~~~~~~~~g--~~~~~-------~~~~-~~d~~---~l~sgs~dg~I~iWd~~~~~~ 359 (369)
..+|.++++.+-.+.. |..|. .+.. ..+|+ .|+.++.+|.++++|.++|+.
T Consensus 273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 9999999998877764 33221 0000 11554 689999999999999999874
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.04 Score=55.95 Aligned_cols=193 Identities=6% Similarity=-0.063 Sum_probs=99.8
Q ss_pred eEEEEC-CCCceeEEEEeccc----ceEEEEeCCcc-eEEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcC-----CeE
Q 017601 152 SGLCFS-PSQWSMAAVARSFS----KSIDVYDQDIH-LRTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEG-----CQL 219 (369)
Q Consensus 152 ~~l~~~-p~~~~~~a~~~s~d----~~i~lwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d-----~~v 219 (369)
.+.+|| |++. .+|.+.+.+ .+|.++|+... ..... .......+. ++||+..|+.+..| .+|
T Consensus 177 ~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~------WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 177 MEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIV------WGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCE------ECSSTTEEEEEEECTTCCEEEE
T ss_pred eeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEE------EecCCCEEEEEEECCCCCCCEE
Confidence 468999 9654 555442333 35999997543 21000 000111222 34567788877765 368
Q ss_pred EEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe---CCCcEEEEeCCCce-ee--eeccccccCceEEEEEc
Q 017601 220 TIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG---ADRTVTIYDPRRWS-AL--SRWVHCSKYEITGLSFS 292 (369)
Q Consensus 220 ~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs---~D~~v~vwD~~~~~-~~--~~~~~h~~~~v~~l~~s 292 (369)
.++++.++.. .....+..........+.||||| +|+..+ ....|.++|+.++. .. ..+.........++.|+
T Consensus 250 ~~~~lgt~~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~ 328 (751)
T 2xe4_A 250 WRHVMGKLQS-EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH 328 (751)
T ss_dssp EEEETTSCGG-GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred EEEECCCCch-hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence 8888877521 11222222212445678999999 665544 23457888988752 22 33333214555666665
Q ss_pred CCCCCEEEEEECC----CeEEEEECcCC-ceeE-EEEcCCCeeeeeE--cCCCCEEEEEeCCCcEE--EEEC
Q 017601 293 SIDSNYIYVQGVD----YEVFCGQWRES-SKVF-AFRGDSNWLGFSK--CSNRDVLGGWSDSGSIF--VADV 354 (369)
Q Consensus 293 p~d~~~l~s~s~D----~~i~vwd~~~~-~~~~-~~~g~~~~~~~~~--~~d~~~l~sgs~dg~I~--iWd~ 354 (369)
. .+.+++....+ ..|..+|+.++ +... .+..... ..+.. ...+.++++...++..+ ++++
T Consensus 329 ~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~-~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 329 G-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSED-VFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp T-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSS-EEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred e-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCC-cEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 4 44444444443 36777777642 2222 2222211 12221 22455677888888655 4554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.1 Score=53.24 Aligned_cols=194 Identities=8% Similarity=-0.084 Sum_probs=110.4
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcc------eEEEE-eeeCCcceeeeccCCCCCCCC-cEEEEEcCCeEEEE
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH------LRTLR-TLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIW 222 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~------~~~~~-~~~~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~iw 222 (369)
..+++|++.+..++.+- ...+.|..++++.. ...+. .+..+..+++-. .++ .+++-...+.|.+.
T Consensus 426 ~~gl~~d~~~~~lY~sD-~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~------~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW------IHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EEEEEEETTTTEEEEEE-TTTTEEEEEEC--------CEEEECSSCSCCCEEEEET------TTTEEEEEETTTTEEEEE
T ss_pred eEEEeecccCCeeEEee-ccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee------cCCcEEEEecCCCeEEEE
Confidence 45799998655555554 66788888877531 11111 122344444432 132 33344457889999
Q ss_pred eCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC--CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEE
Q 017601 223 DLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA--DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYI 299 (369)
Q Consensus 223 D~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~--D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l 299 (369)
|+... ....+..........|++.|.+ .|+.... .+.|.+.++........+... -.....|++.+ ....|
T Consensus 499 ~ldG~----~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~-l~~P~GLavD~-~~~~L 572 (791)
T 3m0c_C 499 DTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDL-LSGRL 572 (791)
T ss_dssp ETTSS----SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-CSCEEEEEEET-TTTEE
T ss_pred eCCCC----eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC-CCCceEEEEec-CCCeE
Confidence 98754 2223322113568899999975 5544432 367888888643332223333 35688999998 55555
Q ss_pred EEE-ECCCeEEEEECcCCceeEEEEcCCCe---eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 300 YVQ-GVDYEVFCGQWRESSKVFAFRGDSNW---LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 300 ~s~-s~D~~i~vwd~~~~~~~~~~~g~~~~---~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+.+ .....|...|+..........+...+ .++.. ..+.++++=...+.|+..|..+++
T Consensus 573 YwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav-~~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE-eCCEEEEEECCCCEEEEEeCCCCc
Confidence 544 45568999998765444444432111 23332 234455555667888888876664
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.13 E-value=0.14 Score=46.12 Aligned_cols=194 Identities=10% Similarity=-0.024 Sum_probs=110.0
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCCcc---eEEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQDIH---LRTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~---~~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
.+++|++.++.++.+- ...+.|..++.+.. ...+. ....+..+.+-. ..+..+++-...+.|.++|+...
T Consensus 38 ~~ld~d~~~~~lyw~D-~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~-----~~g~ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 38 AAVDFVFSHGLIYWSD-VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW-----LGEKLYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEEGGGTEEEEEE-TTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET-----TTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEEEEeCCCEEEEEE-CCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc-----CCCeEEEEECCCCEEEEEECCCC
Confidence 3688988555555544 67788988886532 11111 122444444432 11223344445678999998654
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEe--CCCcEEEEeCCCceeeeec-cccccCceEEEEEcCCCCCEEEEE-
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG--ADRTVTIYDPRRWSALSRW-VHCSKYEITGLSFSSIDSNYIYVQ- 302 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs--~D~~v~vwD~~~~~~~~~~-~~h~~~~v~~l~~sp~d~~~l~s~- 302 (369)
.....+... ......+++.|.+ .|+... ..+.|...++.. .....+ ... -..-+.|+|+| ++..|+-+
T Consensus 112 ---~~~~l~~~~-~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~-l~~Pnglavd~-~~~~lY~aD 184 (318)
T 3sov_A 112 ---LRKVLFWQE-LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSE-IYWPNGLTLDY-EEQKLYWAD 184 (318)
T ss_dssp ---SCEEEECSS-CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSS-CSCEEEEEEET-TTTEEEEEE
T ss_pred ---cEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECC-CCCccEEEEec-cCCEEEEEE
Confidence 211112222 3667899999875 554444 357888888753 222222 222 24568999999 66665554
Q ss_pred ECCCeEEEEECcCCceeEEEEcC-CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 303 GVDYEVFCGQWRESSKVFAFRGD-SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~~~~g~-~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+..+.|..+|+..........+. ..-.++... .+.++.+-...+.|..++..+++.
T Consensus 185 ~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 185 AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence 45678999998753332222211 111333332 345556666778899999877753
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.18 Score=47.40 Aligned_cols=151 Identities=9% Similarity=-0.006 Sum_probs=80.4
Q ss_pred eeEEEEee-cCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc--
Q 017601 95 VQSIALAE-TDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS-- 171 (369)
Q Consensus 95 V~~l~~s~-~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d-- 171 (369)
-..|+++| ++ ..|..+|..+.|+.+|..... + ..+.. ....-.+++|++++..++++. ...
T Consensus 139 P~~lavdp~~~----g~Lyv~d~~~~I~~id~~~~~--v----~~~~~-----~~~~P~~ia~d~~G~~lyvad-~~~~~ 202 (430)
T 3tc9_A 139 AVWLSFDPKNH----NHLYLVGEQHPTRLIDFEKEY--V----STVYS-----GLSKVRTICWTHEADSMIITN-DQNNN 202 (430)
T ss_dssp CCEEEEETTEE----EEEEEEEBTEEEEEEETTTTE--E----EEEEC-----CCSCEEEEEECTTSSEEEEEE-CCSCT
T ss_pred CCEEEECCCCC----CeEEEEeCCCcEEEEECCCCE--E----EEEec-----CCCCcceEEEeCCCCEEEEEe-CCCCc
Confidence 36778876 32 345555555667776665321 1 01111 011235799999665455544 322
Q ss_pred --ceEEEEeCCc-c--eEEEEeeeCCcceeeeccCCCCCCCCcEEE-EEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 172 --KSIDVYDQDI-H--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLA-VTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 172 --~~i~lwd~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla-~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
..+..++... . .+.+....++..+.+. ++++.|.. -..++.|..+|..++ ..............+
T Consensus 203 ~~~~v~~~~~~g~~~~~~~l~~~~~p~giavd------p~~g~lyv~d~~~~~V~~~~~~~~---~~~~~~~~~~~~~P~ 273 (430)
T 3tc9_A 203 DRPNNYILTRESGFKVITELTKGQNCNGAETH------PINGELYFNSWNAGQVFRYDFTTQ---ETTPLFTIQDSGWEF 273 (430)
T ss_dssp TSEEEEEEEGGGTSCSEEEEEECSSCCCEEEC------TTTCCEEEEETTTTEEEEEETTTT---EEEEEEECSSSSCCE
T ss_pred ccceEEEEeCCCceeeeeeeccCCCceEEEEe------CCCCEEEEEECCCCEEEEEECCCC---cEEEEEEcCCCCcce
Confidence 2344444322 1 1233334455555543 32344444 445789999998765 221222221124567
Q ss_pred EEEECCCC-cEEE-EeCCCcEEEEeCC
Q 017601 246 AVCSSSTG-NIAV-AGADRTVTIYDPR 270 (369)
Q Consensus 246 ~v~~sp~g-~las-gs~D~~v~vwD~~ 270 (369)
.++|+|+| +|.. -...+.|..+|..
T Consensus 274 gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 274 HIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred eEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 89999999 4544 4567889988754
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.012 Score=57.92 Aligned_cols=137 Identities=9% Similarity=-0.016 Sum_probs=86.5
Q ss_pred CeEEEEeCCcccCCceeeeeec--cC-------CCcEEEEEEC-CCC----cEEEEeCCCcEEEEeCCCceeeeeccccc
Q 017601 217 CQLTIWDLRMKENGGCLHRICG--SV-------GDILYAVCSS-STG----NIAVAGADRTVTIYDPRRWSALSRWVHCS 282 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~--~~-------~~~v~~v~~s-p~g----~lasgs~D~~v~vwD~~~~~~~~~~~~h~ 282 (369)
+.|.-+|.+++ +.+-.++. +. ..++. +... .+| .++.++.+|.+.++|.++++.+..+...
T Consensus 291 ~~v~AlD~~TG---~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~- 365 (582)
T 1flg_A 291 SGQVGVDPSSG---EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV- 365 (582)
T ss_dssp SEEEEECTTTC---CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS-
T ss_pred ceEEEEeCCCC---CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc-
Confidence 58999999998 55544432 10 11222 2222 455 5778999999999999998887544322
Q ss_pred c-------------Cc--------------------------------eEEEEEcCCCCCEEEEEE--------------
Q 017601 283 K-------------YE--------------------------------ITGLSFSSIDSNYIYVQG-------------- 303 (369)
Q Consensus 283 ~-------------~~--------------------------------v~~l~~sp~d~~~l~s~s-------------- 303 (369)
. .+ -..++++| +..+++...
T Consensus 366 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~ 444 (582)
T 1flg_A 366 DNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQ-DTGLFYVPANHWKEDYWTEEVSY 444 (582)
T ss_dssp SCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECT-TTCCEEEEEECEEEEEEECCCCC
T ss_pred cCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECC-CCCEEEEechhcceeeecccccc
Confidence 1 00 01356677 444444332
Q ss_pred -------------------CCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 304 -------------------VDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 304 -------------------~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.++.|..||+.+++.+-.+.......+-.....+.+++.|+.||.++.||.++|+.
T Consensus 445 ~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 445 TKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 36789999999998876664332111111112467888899999999999999974
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.17 Score=45.30 Aligned_cols=205 Identities=10% Similarity=-0.034 Sum_probs=110.2
Q ss_pred ceeeEEEEeecCCCCceEEEEEec-CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDS-YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~-~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
.....++|++++ ..|.-.|. .+.|+.++.+...... .....+.... ..-.++++.+.+..++.+- ...
T Consensus 30 ~~p~g~~~d~~~----~~ly~~D~~~~~I~~~~~~g~~~~~-~~~~~~~~~~-----~~p~glavd~~~~~ly~~d-~~~ 98 (316)
T 1ijq_A 30 RNVVALDTEVAS----NRIYWSDLSQRMICSTQLDRAHGVS-SYDTVISRDI-----QAPDGLAVDWIHSNIYWTD-SVL 98 (316)
T ss_dssp SSEEEEEEETTT----TEEEEEETTTTEEEEEEC---------CEEEECSSC-----SCCCEEEEETTTTEEEEEE-TTT
T ss_pred CceEEEEEEeCC----CEEEEEECCCCcEEEEECCCCCCCc-ccEEEEeCCC-----CCcCEEEEeecCCeEEEEE-CCC
Confidence 446788998753 24444444 4678888776410000 0001111000 0113789987566555554 677
Q ss_pred ceEEEEeCCcc-eEEEEe--eeCCcceeeeccCCCCCCCCcEEEEEc-C-CeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 172 KSIDVYDQDIH-LRTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVTE-G-CQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 172 ~~i~lwd~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s~-d-~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+.|.++|.+.. .+.+.. ...|..+..- |.++.|..+.. . +.|...++... ....+........+.
T Consensus 99 ~~I~~~~~~g~~~~~~~~~~~~~P~~iavd------p~~g~ly~~d~~~~~~I~~~~~dG~----~~~~~~~~~~~~P~g 168 (316)
T 1ijq_A 99 GTVSVADTKGVKRKTLFRENGSKPRAIVVD------PVHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVTENIQWPNG 168 (316)
T ss_dssp TEEEEEETTSSSEEEEEECTTCCEEEEEEE------TTTTEEEEEECSSSCEEEEEETTSC----CEEEEECSSCSCEEE
T ss_pred CEEEEEeCCCCceEEEEECCCCCcceEEeC------CCCCEEEEEccCCCCeEEEEcCCCC----CeEEEEECCCCCceE
Confidence 89999987633 222221 1234444432 33444444333 2 67888887533 222222111356789
Q ss_pred EEECCCC-cE-EEEeCCCcEEEEeCCCceeeeecc---ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 247 VCSSSTG-NI-AVAGADRTVTIYDPRRWSALSRWV---HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 247 v~~sp~g-~l-asgs~D~~v~vwD~~~~~~~~~~~---~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
++++|++ .| .+-+..+.|..+|+.. .....+. .. .....++++. .+.++++-...+.|..+|..+++.+..
T Consensus 169 la~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~-~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g~~~~~ 244 (316)
T 1ijq_A 169 ITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKR-LAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNL 244 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTT-TSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred EEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCc-cCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCCcceEE
Confidence 9999877 44 4445677999999864 2222221 12 2335677774 455566666677999999876655555
Q ss_pred E
Q 017601 322 F 322 (369)
Q Consensus 322 ~ 322 (369)
+
T Consensus 245 i 245 (316)
T 1ijq_A 245 L 245 (316)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.21 Score=44.36 Aligned_cols=96 Identities=16% Similarity=0.070 Sum_probs=57.9
Q ss_pred CCCCcEEE-EEcCCeEEEEeCCc-ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCcee--eeecc
Q 017601 205 NGGPNMLA-VTEGCQLTIWDLRM-KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSA--LSRWV 279 (369)
Q Consensus 205 ~~~~~lla-~s~d~~v~iwD~~~-~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~--~~~~~ 279 (369)
++++.|.. -...+.|..||+.. +. ......+... .....++++++| ++++....+.|.++|.. ++. +..+.
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~-~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~ 251 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDK-PGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE 251 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSC-BCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCC-CCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc
Confidence 34444443 34578999999874 21 1112222211 234568899999 55555567889999975 554 22333
Q ss_pred ccccCceEEEEEc---CCCCCEEEEEECCC
Q 017601 280 HCSKYEITGLSFS---SIDSNYIYVQGVDY 306 (369)
Q Consensus 280 ~h~~~~v~~l~~s---p~d~~~l~s~s~D~ 306 (369)
.. ....++++|. | +++.|+.+...+
T Consensus 252 ~~-~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 QG-VIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp GT-CTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred cc-cCCceEEEEecccC-CCCEEEEECCCC
Confidence 33 3568999998 8 877776665443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.074 Score=48.44 Aligned_cols=142 Identities=20% Similarity=0.222 Sum_probs=91.2
Q ss_pred CCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECC----CC-c--EEEEe--C--CCcEEEEeC--CC
Q 017601 205 NGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSS----TG-N--IAVAG--A--DRTVTIYDP--RR 271 (369)
Q Consensus 205 ~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp----~g-~--lasgs--~--D~~v~vwD~--~~ 271 (369)
|....+++....+.+.+||+ ++ +.++.+.. +.++.+..-| .| . ++.++ . +++|.+|++ .+
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G---~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~ 110 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DG---KMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN 110 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TS---CEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT
T ss_pred CCccEEEEEcCCCCEEEEcC-CC---cEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC
Confidence 43456777777889999999 66 67777642 4566666554 23 1 33333 3 579999966 33
Q ss_pred ceeeeecc------cccc-CceEEEEE--cCCCCC-EEEEEECCCeEEEEECc-------CCceeEEEEcCCCeeeeeEc
Q 017601 272 WSALSRWV------HCSK-YEITGLSF--SSIDSN-YIYVQGVDYEVFCGQWR-------ESSKVFAFRGDSNWLGFSKC 334 (369)
Q Consensus 272 ~~~~~~~~------~h~~-~~v~~l~~--sp~d~~-~l~s~s~D~~i~vwd~~-------~~~~~~~~~g~~~~~~~~~~ 334 (369)
++ +..+. +. . ..+..+++ +|..+. +++....++.+..|++. +.+.++.|.-.+...++..-
T Consensus 111 ~~-l~~i~~~~~pv~t-~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvD 188 (355)
T 3amr_A 111 GT-LQSMTDPDHPIAT-AINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAAD 188 (355)
T ss_dssp CC-EEECSCTTSCEEC-CCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEE
T ss_pred Cc-eeeccccccCcCC-CCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEc
Confidence 33 44331 12 2 56777888 774454 67778889999999983 24667777654422333333
Q ss_pred CCCCEEEEEeCCCcEEEEECC
Q 017601 335 SNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 335 ~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+....|+.+-++.-|..++.+
T Consensus 189 d~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 189 DEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp TTTTEEEEEETTTEEEEEECS
T ss_pred CCCCeEEEecccceEEEEeCC
Confidence 456789999999776666654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.007 Score=61.02 Aligned_cols=191 Identities=8% Similarity=-0.047 Sum_probs=103.4
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc-----ceEEEE--eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI-----HLRTLR--TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLR 225 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-----~~~~~~--~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~ 225 (369)
+++|++.+..++.+- ...+.|..++... ....+. ....+..+++-. ..+..+++-...+.|.++|+.
T Consensus 410 gla~d~~~~~Ly~sD-~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~-----~~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 410 ALDTEVASNRIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW-----IHSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp CCEEETTTTEEEECC-TTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC-----SSSBCEECCTTTSCEEEEBSS
T ss_pred EEccccccCeEEEEe-cCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe-----eCCcEEEEeccCCeEEEEecC
Confidence 689988555444443 5677888887653 111110 111233333211 112334443456789999987
Q ss_pred cccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC--CCcEEEEeCCCceeeeec-cccccCceEEEEEcCCCCCEEEE
Q 017601 226 MKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA--DRTVTIYDPRRWSALSRW-VHCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~--D~~v~vwD~~~~~~~~~~-~~h~~~~v~~l~~sp~d~~~l~s 301 (369)
.. . +..+..........|+++|.+ +|+.... .+.|.++++... ....+ ... -...+.|+|+|..+.++++
T Consensus 484 g~---~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~-l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 484 GV---K-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTEN-IQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp SC---C-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSS-CSSCCCEEECTTTCCEEEE
T ss_pred CC---c-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCC-CCCccEEEEeccCCEEEEE
Confidence 54 2 222221112456788999976 4444332 267888776532 22222 222 2346789999933555555
Q ss_pred EECCCeEEEEECcCCceeEEEEc-----CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 302 QGVDYEVFCGQWRESSKVFAFRG-----DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 302 ~s~D~~i~vwd~~~~~~~~~~~g-----~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
-+..+.|..+|+........+.. |. .++... .+.++++-...+.|..++..+++
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P--~glavd-~~~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHP--FSLAVF-EDKVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSC--CCCEEE-TTEEEEECSTTTCEEEEETTTEE
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCc--eEeEEE-CCEEEEEeCCCCeEEEEEccCCC
Confidence 56677999999875332222221 22 223222 23455566677899999987665
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.33 Score=45.72 Aligned_cols=202 Identities=10% Similarity=0.008 Sum_probs=101.7
Q ss_pred eeEEEEeec-CCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc--
Q 017601 95 VQSIALAET-DSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS-- 171 (369)
Q Consensus 95 V~~l~~s~~-~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d-- 171 (369)
-..|+|+|+ . ...|..+|..+.|+.++...+. + ..+.. ....-.+++|++++. ++++. ...
T Consensus 141 P~gvavd~~s~---~g~Lyv~D~~~~I~~id~~~g~--v----~~~~~-----~~~~P~giavd~dG~-lyVad-~~~~~ 204 (433)
T 4hw6_A 141 IWRMMFDPNSN---YDDLYWVGQRDAFRHVDFVNQY--V----DIKTT-----NIGQCADVNFTLNGD-MVVVD-DQSSD 204 (433)
T ss_dssp CCEEEECTTTT---TCEEEEECBTSCEEEEETTTTE--E----EEECC-----CCSCEEEEEECTTCC-EEEEE-CCSCT
T ss_pred CceEEEccccC---CCEEEEEeCCCCEEEEECCCCE--E----EEeec-----CCCCccEEEECCCCC-EEEEc-CCCCc
Confidence 457777763 1 1234444444677777664321 0 11111 001134799999665 55444 211
Q ss_pred --ceEEEEeCCc-ce--EEEEeeeCCcceeeeccCCCCCCCCcEE-EEEcCCeEEEEeCCcccCCceeeee-eccCCCcE
Q 017601 172 --KSIDVYDQDI-HL--RTLRTLWYPSSLNFVQNLSPVNGGPNML-AVTEGCQLTIWDLRMKENGGCLHRI-CGSVGDIL 244 (369)
Q Consensus 172 --~~i~lwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~ll-a~s~d~~v~iwD~~~~~~~~~~~~~-~~~~~~~v 244 (369)
..+..++... .. ..+.....|..+.+. ++++.|. +-..++.|..+|..++ .....+ .......-
T Consensus 205 ~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd------~~~G~lyv~d~~~~~V~~~d~~~g---~~~~~~~~~~~~~~~ 275 (433)
T 4hw6_A 205 TNTGIYLFTRASGFTERLSLCNARGAKTCAVH------PQNGKIYYTRYHHAMISSYDPATG---TLTEEEVMMDTKGSN 275 (433)
T ss_dssp TSEEEEEECGGGTTCCEEEEEECSSBCCCEEC------TTTCCEEECBTTCSEEEEECTTTC---CEEEEEEECSCCSSC
T ss_pred ccceEEEEECCCCeeccccccccCCCCEEEEe------CCCCeEEEEECCCCEEEEEECCCC---eEEEEEeccCCCCCc
Confidence 1233333221 11 122223344444432 3233444 4445788999998766 331222 21101334
Q ss_pred EEEEECCCC-cEEEE-eCCCcEEEEeCC--Ccee--eeecccc--------------ccCceEEEEE---------cCCC
Q 017601 245 YAVCSSSTG-NIAVA-GADRTVTIYDPR--RWSA--LSRWVHC--------------SKYEITGLSF---------SSID 295 (369)
Q Consensus 245 ~~v~~sp~g-~lasg-s~D~~v~vwD~~--~~~~--~~~~~~h--------------~~~~v~~l~~---------sp~d 295 (369)
+.++|+|+| .|..+ ...+.|..+|.. ++.. ...+.+. .-.....+++ .+ +
T Consensus 276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~ 354 (433)
T 4hw6_A 276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-E 354 (433)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-C
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-C
Confidence 579999999 45544 457889998764 2221 1111110 0123567898 66 7
Q ss_pred CCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 296 SNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+.++++-...+.|+.++. .+ .+.++-|
T Consensus 355 g~lyvaD~~n~~I~~~~~-~G-~v~t~~G 381 (433)
T 4hw6_A 355 YDFYFCDRDSHTVRVLTP-EG-RVTTYAG 381 (433)
T ss_dssp EEEEEEETTTTEEEEECT-TS-EEEEEEC
T ss_pred CcEEEEECCCCEEEEECC-CC-CEEEEEe
Confidence 777777666778999985 44 3444433
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.16 Score=45.74 Aligned_cols=153 Identities=10% Similarity=0.095 Sum_probs=95.7
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCC-cceEEEEeeeC----------CcceeeeccCCCCCCCCcEEEEEc------
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWY----------PSSLNFVQNLSPVNGGPNMLAVTE------ 215 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~lla~s~------ 215 (369)
+++|++.+.. +.++.-+.++|..||.. .....+ .... +..+.+.. .+++ ++|+++.+
T Consensus 17 ~~~wd~~~g~-~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~---~D~~-grL~vv~~~~~af~ 90 (334)
T 2p9w_A 17 DTIYDRTRQV-FYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLT---HDNS-KRLFAVMKNAKSFN 90 (334)
T ss_dssp CEEEETTTTE-EEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESS---SSSC-CEEEEEEEETTTTC
T ss_pred CccCcCCCCE-EEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEec---cCCC-CcEEEEEccccccc
Confidence 5899885554 44443689999999986 333222 2211 12222220 0244 56666544
Q ss_pred --------CCeEEEEeCC---cccCCceeeeeecc------------CCCcEEEEEECCCC-cEEEEeCC-CcEEEEeCC
Q 017601 216 --------GCQLTIWDLR---MKENGGCLHRICGS------------VGDILYAVCSSSTG-NIAVAGAD-RTVTIYDPR 270 (369)
Q Consensus 216 --------d~~v~iwD~~---~~~~~~~~~~~~~~------------~~~~v~~v~~sp~g-~lasgs~D-~~v~vwD~~ 270 (369)
+..|..||+. ++ +.+...... .....+.++..++| ..++++.- +.|...|..
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg---~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENS---KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTC---CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred ccccccCCCCEEEEEcCCcCCCC---CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 5789999998 66 444333210 01247899999999 77777777 777777765
Q ss_pred Cceeeeecc-----ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 271 RWSALSRWV-----HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 271 ~~~~~~~~~-----~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
. +.+..+. .......+.++++| +++.|+....++.+.-+|++..
T Consensus 168 G-~~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 168 G-KTVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp S-CCEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSS
T ss_pred C-CEEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCC
Confidence 3 2333221 11023467999999 9999888877999999998853
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.26 Score=42.76 Aligned_cols=203 Identities=7% Similarity=0.040 Sum_probs=113.4
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
+-.+++..|+|+|++ ..+.+..+..+.|+..|.+ + . +.. ...+... ...-++++.+.+ .++++. -
T Consensus 24 g~~~~lSGla~~~~~---~~L~aV~d~~~~I~~ld~~-g-~-v~~-~i~l~g~------~D~EGIa~~~~g-~~~vs~-E 88 (255)
T 3qqz_A 24 GITNNISSLTWSAQS---NTLFSTINKPAAIVEMTTN-G-D-LIR-TIPLDFV------KDLETIEYIGDN-QFVISD-E 88 (255)
T ss_dssp TCCSCEEEEEEETTT---TEEEEEEETTEEEEEEETT-C-C-EEE-EEECSSC------SSEEEEEECSTT-EEEEEE-T
T ss_pred CcccCcceeEEeCCC---CEEEEEECCCCeEEEEeCC-C-C-EEE-EEecCCC------CChHHeEEeCCC-EEEEEE-C
Confidence 334679999999873 3566667888888887765 2 1 111 1111111 124478888743 444444 5
Q ss_pred ccceEEEEeCCc--ceEEEEeee-----CC--cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec--
Q 017601 170 FSKSIDVYDQDI--HLRTLRTLW-----YP--SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG-- 238 (369)
Q Consensus 170 ~d~~i~lwd~~~--~~~~~~~~~-----~~--~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~-- 238 (369)
.+..+.+++++. .+....... .+ ..+.-+. ++++++.|.++.+.....||.++.-.....+..+..
T Consensus 89 ~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA---~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLA---YSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEE---EETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH
T ss_pred CCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEE---EeCCCCEEEEEECcCCceEEEEcccccCCceeeecchh
Confidence 567888887542 112222111 11 1111222 234566788777755555555541111112222211
Q ss_pred ---c-CCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeec--c-ccc-----cCceEEEEEcCCCCCEEEEEEC
Q 017601 239 ---S-VGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRW--V-HCS-----KYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 239 ---~-~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~--~-~h~-----~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
. ....+.+++|+|.. +++.....+.+.++|.. ++.+..+ . +.. -..--.|+|.+ +|++.++ |.
T Consensus 166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIv-sE 242 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIV-SE 242 (255)
T ss_dssp HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEE-ET
T ss_pred hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEE-cC
Confidence 0 02457899999987 66777788889999965 5555433 3 210 13568999999 9985555 78
Q ss_pred CCeEEEEEC
Q 017601 305 DYEVFCGQW 313 (369)
Q Consensus 305 D~~i~vwd~ 313 (369)
.+.++.+.-
T Consensus 243 ~n~~y~f~~ 251 (255)
T 3qqz_A 243 PNRFYRFTP 251 (255)
T ss_dssp TTEEEEEEC
T ss_pred CceEEEEEe
Confidence 787776653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.73 Score=46.80 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=109.1
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEeee-------CCcceeeeccCCCCCCCCc-EEEEEcCCeEE
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRTLW-------YPSSLNFVQNLSPVNGGPN-MLAVTEGCQLT 220 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~-lla~s~d~~v~ 220 (369)
.+.++...+++ . +-++ ..++-+..||... ....+.... ....+..+. .++ ++. |..++.++-|.
T Consensus 358 ~V~~i~~d~~g-~-lWiG-t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~---~d~-~g~~lWigt~~~Gl~ 430 (795)
T 4a2l_A 358 VVSCIVEDKDK-N-LWIG-TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVY---VDE-KKSLVYIGTHAGGLS 430 (795)
T ss_dssp SEEEEEECTTS-C-EEEE-ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEE---EET-TTTEEEEEETTTEEE
T ss_pred eeEEEEECCCC-C-EEEE-ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEE---EcC-CCCEEEEEeCcCcee
Confidence 46677777643 3 3444 4666788998753 233222110 011222221 112 345 77777778899
Q ss_pred EEeCCcccCCceeeeeec----cCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeecc-----c-cccCceEEEE
Q 017601 221 IWDLRMKENGGCLHRICG----SVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWV-----H-CSKYEITGLS 290 (369)
Q Consensus 221 iwD~~~~~~~~~~~~~~~----~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~-----~-h~~~~v~~l~ 290 (369)
+||.+++ + +..+.. -....|+++...++|.|-.|+. +-+.+||..+++...... . . ...|.++.
T Consensus 431 ~~d~~~~---~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~ 504 (795)
T 4a2l_A 431 ILHRNSG---Q-VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVV-SKQITTLF 504 (795)
T ss_dssp EEETTTC---C-EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCC-CCCEEEEE
T ss_pred EEeCCCC---c-EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccC-CceEEEEE
Confidence 9998876 3 233321 0036799999998885555555 458889988765433211 1 2 35789999
Q ss_pred EcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc-------CC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 291 FSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG-------DS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 291 ~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g-------~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
..+ ++.+.+... +.+..||..+++. .+.. .. ....+....+|.+.++.. . -|..||.++++
T Consensus 505 ~d~-~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 505 RDS-HKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQ 573 (795)
T ss_dssp ECT-TCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTE
T ss_pred ECC-CCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCc
Confidence 998 888766554 5688899877655 3321 11 112233334677665543 3 57888877654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.73 Score=46.77 Aligned_cols=192 Identities=9% Similarity=0.084 Sum_probs=112.4
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCcc-eEEEEeee------CCcceeeeccCCCCCCCCcEEEEEcCCeEEEE
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH-LRTLRTLW------YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIW 222 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~-~~~~~~~~------~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iw 222 (369)
.+.++...+++ .+ -++ ..+ -|.+||.... ...+.... ....+..+. .++ .+.+-.++.++-|..|
T Consensus 264 ~i~~i~~d~~g-~l-Wig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~---~D~-~g~lWigt~~~Gl~~~ 335 (795)
T 4a2l_A 264 YIRSLAMDSQN-RL-WIG-TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIF---MDS-QGGMWLGTYFGGLNYY 335 (795)
T ss_dssp BEEEEEECTTS-CE-EEE-ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEE---ECT-TSCEEEEESSSCEEEE
T ss_pred eEEEEEEcCCC-CE-EEE-eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEE---EeC-CcCEEEEECCCCeEEe
Confidence 46678777743 33 334 234 5888886533 22221110 011222222 123 3567777777889999
Q ss_pred eCCcccCCceeeeeecc------CCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeecc--------ccccCceEE
Q 017601 223 DLRMKENGGCLHRICGS------VGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWV--------HCSKYEITG 288 (369)
Q Consensus 223 D~~~~~~~~~~~~~~~~------~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~--------~h~~~~v~~ 288 (369)
|..+. . ...+... ....|.+++..++|.|-.|..++-|..||..+++...-.. -. ...|.+
T Consensus 336 ~~~~~---~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~-~~~v~~ 410 (795)
T 4a2l_A 336 HPIRN---R-FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIG-SNNIKA 410 (795)
T ss_dssp CGGGG---S-SEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCS-CSCEEE
T ss_pred CCCcc---c-ceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCC-CccEEE
Confidence 87654 2 2222210 0356999999998866678888789999987754332211 11 356899
Q ss_pred EEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc------CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 289 LSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG------DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 289 l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g------~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+...+ +++.|..|..++-+.++|.++++... +.. ......+....+|.+.++. . +-|.+||.++++
T Consensus 411 i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 411 VYVDE-KKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRS 482 (795)
T ss_dssp EEEET-TTTEEEEEETTTEEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTE
T ss_pred EEEcC-CCCEEEEEeCcCceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCe
Confidence 99888 88856667787889999988765433 321 1111233333466665554 4 458889987654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.073 Score=50.17 Aligned_cols=149 Identities=12% Similarity=0.069 Sum_probs=83.7
Q ss_pred EEEECCC-CceeEEEEecccceEEEEeCCc-ceEEEEe-eeCCcceeeeccCCCCCCCCcEEEEEc-CC----eEEEEeC
Q 017601 153 GLCFSPS-QWSMAAVARSFSKSIDVYDQDI-HLRTLRT-LWYPSSLNFVQNLSPVNGGPNMLAVTE-GC----QLTIWDL 224 (369)
Q Consensus 153 ~l~~~p~-~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~~~~lla~s~-d~----~v~iwD~ 224 (369)
+++++|. +..++++- .. +.|..+|... .+..+.. ...|..+.+. +++..|+.+.. ++ .+..++
T Consensus 141 ~lavdp~~~g~Lyv~d-~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d------~~G~~lyvad~~~~~~~~~v~~~~- 211 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVG-EQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWT------HEADSMIITNDQNNNDRPNNYILT- 211 (430)
T ss_dssp EEEEETTEEEEEEEEE-BT-EEEEEEETTTTEEEEEECCCSCEEEEEEC------TTSSEEEEEECCSCTTSEEEEEEE-
T ss_pred EEEECCCCCCeEEEEe-CC-CcEEEEECCCCEEEEEecCCCCcceEEEe------CCCCEEEEEeCCCCcccceEEEEe-
Confidence 6999983 45444443 33 7899999764 3333322 1233344433 34554444432 22 233344
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECC-CC-cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEE-E
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSS-TG-NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYI-Y 300 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g-~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l-~ 300 (369)
+.+.- .....+... .....++++| +| ++++-..++.|..+|...+....... +. ...-..++|+| ++++| +
T Consensus 212 ~~g~~-~~~~~l~~~--~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-~~~P~gia~~p-dG~~lyv 286 (430)
T 3tc9_A 212 RESGF-KVITELTKG--QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-SGWEFHIQFHP-SGNYAYI 286 (430)
T ss_dssp GGGTS-CSEEEEEEC--SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-SSCCEEEEECT-TSSEEEE
T ss_pred CCCce-eeeeeeccC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-CCcceeEEEcC-CCCEEEE
Confidence 33311 111222222 4457789999 66 55555567889999988765422211 11 23467899999 99954 4
Q ss_pred EEECCCeEEEEECcC
Q 017601 301 VQGVDYEVFCGQWRE 315 (369)
Q Consensus 301 s~s~D~~i~vwd~~~ 315 (369)
+-...+.|..+|...
T Consensus 287 ~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EECCCCEEEEEeCCc
Confidence 555678999988764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.57 E-value=0.48 Score=44.00 Aligned_cols=206 Identities=9% Similarity=-0.046 Sum_probs=109.6
Q ss_pred ceeeEEEEeecCCCCceEEEEEec-CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDS-YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~-~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
..+..|+|++.+ ..|.-.|. .+.|+.++++...... .....+.. .-..-.++++.+.+..++.+- ...
T Consensus 112 ~~~~~l~~d~~~----~~lywsD~~~~~I~~~~~~g~~~~~-~~~~~~~~-----~~~~p~glavD~~~~~lY~~d-~~~ 180 (400)
T 3p5b_L 112 RNVVALDTEVAS----NRIYWSDLSQRMICSTQLDRAHGVS-SYDTVISR-----DIQAPDGLAVDWIHSNIYWTD-SVL 180 (400)
T ss_dssp SCEEEEEEETTT----TEEEEEETTTTEEEEEEC------C-CCEEEECS-----SCSCEEEEEEETTTTEEEEEE-TTT
T ss_pred CcceEEeeeecc----CceEEEecCCCeEEEEEcccCCCCC-cceEEEeC-----CCCCcccEEEEecCCceEEEE-CCC
Confidence 567789998753 24444443 4677777765421000 00011110 011234799988666555555 677
Q ss_pred ceEEEEeCCcce-EEEEe--eeCCcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 172 KSIDVYDQDIHL-RTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 172 ~~i~lwd~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+.|.+.+.+... ..+.. ...|..+..- |.++.|.-+. ..+.|...++... ....+....-...+.
T Consensus 181 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavd------p~~g~ly~td~~~~~~I~~~~~dG~----~~~~~~~~~l~~P~g 250 (400)
T 3p5b_L 181 GTVSVADTKGVKRKTLFRENGSKPRAIVVD------PVHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVTENIQWPNG 250 (400)
T ss_dssp TEEEEECTTTCSEEEEEECSSCCEEEEEEE------TTTTEEEEEECSSSCCEEEEETTSC----SCEEEECSSCSCEEE
T ss_pred CeEEEEeCCCCceEEEEeCCCCCcceEEEe------cccCeEEEEeCCCCCEEEEEeCCCC----ccEEEEECCCCceEE
Confidence 899999876432 22211 1234444433 2233443332 2367888887643 222222111356789
Q ss_pred EEECCCC-cEEEE-eCCCcEEEEeCCCceeeeecc--ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 247 VCSSSTG-NIAVA-GADRTVTIYDPRRWSALSRWV--HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 247 v~~sp~g-~lasg-s~D~~v~vwD~~~~~~~~~~~--~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
|+++|++ .|+.+ ...+.|..+|+.......... +. .....++++. .+.++.+-...+.|..+|..+++.+..+
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 251 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSST-TSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred EEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCC-CCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 9999877 55444 557789999986432221111 12 2335567763 3455666666678999997666554444
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.24 Score=46.58 Aligned_cols=149 Identities=12% Similarity=0.143 Sum_probs=80.3
Q ss_pred EEEECCC-CceeEEEEecccceEEEEeC-CcceEEEEe-eeCCcceeeeccCCCCCCCCcEEEEEcC----Ce-EEEEeC
Q 017601 153 GLCFSPS-QWSMAAVARSFSKSIDVYDQ-DIHLRTLRT-LWYPSSLNFVQNLSPVNGGPNMLAVTEG----CQ-LTIWDL 224 (369)
Q Consensus 153 ~l~~~p~-~~~~~a~~~s~d~~i~lwd~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~lla~s~d----~~-v~iwD~ 224 (369)
+++|+|+ +...|.++ ...+.|+.+|. ...+..+.. ...|..+.+. +++. |..+... .. +...+.
T Consensus 143 gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~~~~~~~P~giavd------~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIKTTNIGQCADVNFT------LNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp EEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEECCCCSCEEEEEEC------TTCC-EEEEECCSCTTSEEEEEECG
T ss_pred eEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEeecCCCCccEEEEC------CCCC-EEEEcCCCCcccceEEEEEC
Confidence 7999994 23344444 22388999997 344443321 2233344433 4455 4433321 12 333333
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECC-CCcEE-EEeCCCcEEEEeCCCceeeeecccc-ccCceEEEEEcCCCCCEEE-
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSS-TGNIA-VAGADRTVTIYDPRRWSALSRWVHC-SKYEITGLSFSSIDSNYIY- 300 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~la-sgs~D~~v~vwD~~~~~~~~~~~~h-~~~~v~~l~~sp~d~~~l~- 300 (369)
..+. .....+.. ......++++| +|.|. +-..++.|..+|..++.....+... ....-..++|+| +++.|+
T Consensus 215 ~~~~--~~~~~~~~--~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp-dG~~LYv 289 (433)
T 4hw6_A 215 ASGF--TERLSLCN--ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP-TGDWAYI 289 (433)
T ss_dssp GGTT--CCEEEEEE--CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT-TSSEEEE
T ss_pred CCCe--eccccccc--cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC-CCCEEEE
Confidence 2211 10011221 24456788999 66444 4446778999998876652322211 022235799999 998544
Q ss_pred EEECCCeEEEEECc
Q 017601 301 VQGVDYEVFCGQWR 314 (369)
Q Consensus 301 s~s~D~~i~vwd~~ 314 (369)
+-...+.|+.+|..
T Consensus 290 ad~~~~~I~~~~~d 303 (433)
T 4hw6_A 290 IYNGKHCIYRVDYN 303 (433)
T ss_dssp EETTTTEEEEEEBC
T ss_pred EeCCCCEEEEEeCC
Confidence 44556799998875
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.018 Score=56.71 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=45.8
Q ss_pred CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 261 DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 261 D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
++.|..||+++++.+-+.... .++..-.... .+.+++.++.|+.++.||.++++.+-.++...
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH--LPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES--SCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cceEEEEECCCCCEEEEecCC--CCCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 688999999999887655433 2222211222 45778889999999999999999998887544
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.38 Score=46.07 Aligned_cols=158 Identities=11% Similarity=-0.009 Sum_probs=86.2
Q ss_pred EEEECCC-CceeEEEEecccceEEEEeCCc-ceEEEEeee-----CCcceee-eccCCCCCCCCcEEEEEcCC-------
Q 017601 153 GLCFSPS-QWSMAAVARSFSKSIDVYDQDI-HLRTLRTLW-----YPSSLNF-VQNLSPVNGGPNMLAVTEGC------- 217 (369)
Q Consensus 153 ~l~~~p~-~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~~-----~~~~v~~-~~~~~~~~~~~~lla~s~d~------- 217 (369)
+++|+|. +..++++. ...+.|++.|... .+..+.... .+..+.+ .....+++++..|+.+...+
T Consensus 143 ~la~dp~~~~~Lyv~~-~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 143 RLAFDPLNKDHLYICY-DGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEETTEEEEEEEEE-ETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred EEEEccCCCCEEEEEE-CCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 6999994 44444444 3446788888764 555443221 1333444 01111235566566555433
Q ss_pred eEEEEeCCc-ccCCc-e-eeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCC-------Ccee-----------
Q 017601 218 QLTIWDLRM-KENGG-C-LHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPR-------RWSA----------- 274 (369)
Q Consensus 218 ~v~iwD~~~-~~~~~-~-~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~-------~~~~----------- 274 (369)
.|.+.+-.. +.-.. . .+.+..- .....++++|++ ++++-..++.|..+|+. ++..
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~~--~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAAY--KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEEE--SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred eEEEEecCCCCceeecccceeeccC--CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266666333 11000 0 0122211 334578899955 55666678889999987 4433
Q ss_pred eeec-c-ccccCceEEEEEcCCCCCEEE-EEECCCeEEEEECcC
Q 017601 275 LSRW-V-HCSKYEITGLSFSSIDSNYIY-VQGVDYEVFCGQWRE 315 (369)
Q Consensus 275 ~~~~-~-~h~~~~v~~l~~sp~d~~~l~-s~s~D~~i~vwd~~~ 315 (369)
...+ . +. ...-+.|+|+| ++++|+ +-+..+.|+.+|...
T Consensus 300 ~~~l~~~~~-~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 300 FKQLFTIAD-PSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EEEEEECSS-SSCCEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred cceeEecCC-CCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCC
Confidence 1111 1 12 34468999999 999544 445567899977643
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.47 Score=42.77 Aligned_cols=156 Identities=7% Similarity=0.052 Sum_probs=99.7
Q ss_pred CCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceee-eeec-----cCCCcEEEEEE---CCCC-cEEEEe
Q 017601 191 YPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLH-RICG-----SVGDILYAVCS---SSTG-NIAVAG 259 (369)
Q Consensus 191 ~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~-~~~~-----~~~~~v~~v~~---sp~g-~lasgs 259 (369)
.|..+.|-. ..+.|..++ ..++|..||...+ .... .+.+ .....++.|.| .|++ ++++..
T Consensus 14 yPE~~~wd~------~~g~~~vs~l~~g~V~~~~~~~~---~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 14 TPEDTIYDR------TRQVFYQSNLYKGRIEVYNPKTQ---SHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp CCSCEEEET------TTTEEEEEETTTTEEEEECTTTC---CEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred CCcCccCcC------CCCEEEEEeccCCEEEEEcCCCC---eEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence 345555543 234666555 5899999998754 2222 2221 10124689999 6889 555433
Q ss_pred -------------CCCcEEEEeCC---Cceeeee--cccc----------ccCceEEEEEcCCCCCEEEEEECC-CeEEE
Q 017601 260 -------------ADRTVTIYDPR---RWSALSR--WVHC----------SKYEITGLSFSSIDSNYIYVQGVD-YEVFC 310 (369)
Q Consensus 260 -------------~D~~v~vwD~~---~~~~~~~--~~~h----------~~~~v~~l~~sp~d~~~l~s~s~D-~~i~v 310 (369)
.++.|..||+. +++.+.. +... .......++..+ +|+..++++.- +.|..
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIAR 163 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEE
Confidence 26789999999 7766543 2221 012488999999 99999998888 88777
Q ss_pred EECcCCceeEEEEcC----C--CeeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 311 GQWRESSKVFAFRGD----S--NWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 311 wd~~~~~~~~~~~g~----~--~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
.+........-+... . ...++...++|.+|+.....|.|..+|+.+
T Consensus 164 V~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 164 VSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp ECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 776543222222111 1 124777788998888776699999999874
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.27 E-value=0.6 Score=41.85 Aligned_cols=203 Identities=9% Similarity=-0.068 Sum_probs=109.5
Q ss_pred ceeeEEEEeecCCCCceEEEEEec-CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDS-YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~-~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
.....++|.+.+ ..|.-.|. .+.|+.++.+..... ...+.... ..-.++++.+.+..++.+- ...
T Consensus 35 ~~~~~ld~d~~~----~~lyw~D~~~~~I~r~~~~g~~~~----~~~~~~~l-----~~p~glavd~~~g~ly~~d-~~~ 100 (318)
T 3sov_A 35 EDAAAVDFVFSH----GLIYWSDVSEEAIKRTEFNKTESV----QNVVVSGL-----LSPDGLACDWLGEKLYWTD-SET 100 (318)
T ss_dssp EEEEEEEEEGGG----TEEEEEETTTTEEEEEETTSSSCC----CEEEEECC-----SCCCEEEEETTTTEEEEEE-TTT
T ss_pred CccEEEEEEeCC----CEEEEEECCCCcEEEEEccCCCce----EEEEcCCC-----CCccEEEEEcCCCeEEEEE-CCC
Confidence 345688888753 24444443 456777776543110 00000000 0123789988666655554 667
Q ss_pred ceEEEEeCCcce-EEEE--eeeCCcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 172 KSIDVYDQDIHL-RTLR--TLWYPSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 172 ~~i~lwd~~~~~-~~~~--~~~~~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+.|.+++.+... +.+. ....|..+..-. .++.|..+. ..+.|...++... ....+....-...+.
T Consensus 101 ~~I~~~~~dG~~~~~l~~~~~~~P~giavdp------~~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~~~l~~Png 170 (318)
T 3sov_A 101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDP------SSGFMYWTDWGEVPKIERAGMDGS----SRFIIINSEIYWPNG 170 (318)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEEEG------GGTEEEEEECSSSCEEEEEETTSC----SCEEEECSSCSCEEE
T ss_pred CEEEEEECCCCcEEEEEeCCCCCccEEEEeC------CCCEEEEEecCCCCEEEEEEcCCC----CeEEEEECCCCCccE
Confidence 889999876322 2221 122344444432 233443333 2467888887533 222222111256789
Q ss_pred EEECCCC-cE-EEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 247 VCSSSTG-NI-AVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 247 v~~sp~g-~l-asgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
++|+|++ .| .+=+..+.|..+|+........+.+. .....++++.. +.++.+-...+.|..+|..+++....+
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFE--DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC-CSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC-CCCceEEEEeC--CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 9999976 44 44456788999998642222122223 34456777754 355556556778999998776554444
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=1.2 Score=45.19 Aligned_cols=207 Identities=10% Similarity=-0.047 Sum_probs=106.3
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
..+..|+|++.+ ..+..+-...+.|+.++++..... ......+.... ..-.+|++.+.+..++.+- ...+
T Consensus 424 ~~~~gl~~d~~~---~~lY~sD~~~~~I~~~~l~g~~~~-~~~~~vi~~~l-----~~P~GLAvD~~~~~LY~tD-~~~~ 493 (791)
T 3m0c_C 424 RNVVALDTEVAS---NRIYWSDLSQRMICSTQLDRAHGV-SSYDTVISRDI-----QAPDGLAVDWIHSNIYWTD-SVLG 493 (791)
T ss_dssp SSEEEEEEETTT---TEEEEEETTTTEEEEEEC---------CEEEECSSC-----SCCCEEEEETTTTEEEEEE-TTTT
T ss_pred CceEEEeecccC---CeeEEeeccceeEEEEeccCCCCC-cceeEEEecCC-----CCcceeeeeecCCcEEEEe-cCCC
Confidence 456788887743 223333333466777776532100 00001111000 1123799988666665555 7788
Q ss_pred eEEEEeCCcce-EEEEe--eeCCcceeeeccCCCCCCCCcEEEEE-c-CCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 173 SIDVYDQDIHL-RTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVT-E-GCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 173 ~i~lwd~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s-~-d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
.|.+.+.+... +.+.. +..|..+++-. ..+.|.-+. . .+.|...++... ....+........+.|
T Consensus 494 ~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp------~~g~LYwtD~g~~~~I~~~~~dG~----~~~~lv~~~l~~P~GL 563 (791)
T 3m0c_C 494 TVSVADTKGVKRKTLFRENGSKPRAIVVDP------VHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVTENIQWPNGI 563 (791)
T ss_dssp EEEEEETTSSSEEEEEECTTCCEEEEEEET------TTTEEEEEECSSSCEEEEEETTSC----CEEEEECSSCSCEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCCCcceEEEec------CCCCEEEecCCCCCeEEEEecCCC----ceEEEEeCCCCCceEE
Confidence 99999986433 33321 12344444432 233333332 2 367888888643 2222322213578899
Q ss_pred EECCCC-cEEEE-eCCCcEEEEeCCCceeeeeccc--cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 248 CSSSTG-NIAVA-GADRTVTIYDPRRWSALSRWVH--CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 248 ~~sp~g-~lasg-s~D~~v~vwD~~~~~~~~~~~~--h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
++++.+ +|+.+ ...+.|...|+........+.. . -....+|++.. +.++++-...+.|...|..+++.+..+
T Consensus 564 avD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~-l~~P~glav~~--~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 564 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT-TSSEEEEEEET--TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCc-cCCCCEEEEeC--CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 999776 55444 4567899999864332222222 2 12345666643 344445455678888886665443333
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.063 Score=54.01 Aligned_cols=204 Identities=10% Similarity=-0.022 Sum_probs=103.5
Q ss_pred eeeEEEEeecCCCCceEEEEEec-CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 94 EVQSIALAETDSSGYMVLGSVDS-YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~-~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
.+..|+|++.+ ..|.-.|. .+.|+.+++....... .....+... . ..-.++++.+.+..++++- ...+
T Consensus 407 ~p~gla~d~~~----~~Ly~sD~~~~~I~~~~~~g~~~~~-~~~~~i~~~---~--~~P~glavD~~~g~LY~tD-~~~~ 475 (699)
T 1n7d_A 407 NVVALDTEVAS----NRIYWSDLSQRMICSTQLDRAHGVS-SYDTVISRD---I--QAPDGLAVDWIHSNIYWTD-SVLG 475 (699)
T ss_dssp TCCCCEEETTT----TEEEECCTTTTSBEEEESCCCCC-C-CCCCBCCSC---C----CCCEECCCSSSBCEECC-TTTS
T ss_pred ceEEEcccccc----CeEEEEecCCCeEEEEecCCCCCCc-ceEEEEeCC---C--CCcceEEEEeeCCcEEEEe-ccCC
Confidence 45577887653 34444443 4677777765310000 000001000 0 0112688887555555544 5678
Q ss_pred eEEEEeCCcce-EEEEe--eeCCcceeeeccCCCCCCCCcEEEEE-c-CCeEEEEeCCcccCCceeeee-eccCCCcEEE
Q 017601 173 SIDVYDQDIHL-RTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVT-E-GCQLTIWDLRMKENGGCLHRI-CGSVGDILYA 246 (369)
Q Consensus 173 ~i~lwd~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s-~-d~~v~iwD~~~~~~~~~~~~~-~~~~~~~v~~ 246 (369)
.|.+++.+... +.+.. ...|..+++ ++.++.|..+. . .+.|..+++... ....+ ... ....+.
T Consensus 476 ~I~v~d~dg~~~~~l~~~~~~~P~giav------Dp~~g~ly~td~~~~~~I~~~~~dG~----~~~~l~~~~-l~~PnG 544 (699)
T 1n7d_A 476 TVSVADTKGVKRKTLFREQGSKPRAIVV------DPVHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVTEN-IQWPNG 544 (699)
T ss_dssp CEEEEBSSSCCEEEECCCSSCCCCCEEC------CSSSSCCEECCCSSSCCEEBCCSSSC----CCCEESCSS-CSSCCC
T ss_pred eEEEEecCCCceEEEEeCCCCCcceEEE------ccCCCcEEEcccCCCCeEEEEeCCCC----CeeEEEeCC-CCCccE
Confidence 89999876432 22211 123334332 23333433322 2 267777777533 11112 111 245678
Q ss_pred EEECCCC-cE-EEEeCCCcEEEEeCCCceeeeecc--ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 247 VCSSSTG-NI-AVAGADRTVTIYDPRRWSALSRWV--HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 247 v~~sp~g-~l-asgs~D~~v~vwD~~~~~~~~~~~--~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
|+|+|++ +| ++-+..+.|.++|+........+. .. .....+|++.. + .++++....+.|..+|..+++.+..+
T Consensus 545 lavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~~~P~glavd~-~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 545 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSS-CSSCCCCEEET-T-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred EEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCc-CCCceEeEEEC-C-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 9999987 44 444567789999986422221111 11 12344556554 3 45555556678999998776555544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.85 Score=41.61 Aligned_cols=168 Identities=15% Similarity=0.140 Sum_probs=92.5
Q ss_pred ccceEEEEeCCc---ceEEEEeee--------CCcceeeeccCCCCCCCC-cEEEEEc---CCeEEEEeCCcccC-Ccee
Q 017601 170 FSKSIDVYDQDI---HLRTLRTLW--------YPSSLNFVQNLSPVNGGP-NMLAVTE---GCQLTIWDLRMKEN-GGCL 233 (369)
Q Consensus 170 ~d~~i~lwd~~~---~~~~~~~~~--------~~~~v~~~~~~~~~~~~~-~lla~s~---d~~v~iwD~~~~~~-~~~~ 233 (369)
.++.|.++|... ..+.+.... +|..+.+... .++. +|+.+.. +.++.||++..... ...+
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d----~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~ 156 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID----DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHL 156 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC----TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC----CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEE
Confidence 578899999752 233343321 2334444331 1233 4555532 56888988765321 1233
Q ss_pred eeeeccCCCcEEEEEECCCC-cEEEEe-----------------CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCC
Q 017601 234 HRICGSVGDILYAVCSSSTG-NIAVAG-----------------ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSID 295 (369)
Q Consensus 234 ~~~~~~~~~~v~~v~~sp~g-~lasgs-----------------~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d 295 (369)
..+.+......+.+++.++| .+++.. ..+.|.-+|.. + +..+... -..-+.++||| |
T Consensus 157 ~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~~~~-l~~pNGia~sp-D 231 (355)
T 3sre_A 157 KTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVVAEG-FDFANGINISP-D 231 (355)
T ss_dssp EEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEEEEE-ESSEEEEEECT-T
T ss_pred eccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEeecC-CcccCcceECC-C
Confidence 44544334568999999999 555543 12445555543 2 2222222 24568999999 9
Q ss_pred CCEEEEEE-CCCeEEEEECcC-Cce--eEEEEcCCCeeeeeEcC-CCCEEEEEeCC
Q 017601 296 SNYIYVQG-VDYEVFCGQWRE-SSK--VFAFRGDSNWLGFSKCS-NRDVLGGWSDS 346 (369)
Q Consensus 296 ~~~l~s~s-~D~~i~vwd~~~-~~~--~~~~~g~~~~~~~~~~~-d~~~l~sgs~d 346 (369)
++.|+.+. ..++|..||+.. +.. ...+.-...-.++...+ +|.+.+++..+
T Consensus 232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESC
T ss_pred CCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCC
Confidence 98776654 578999999864 322 12332111114555555 47777766533
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.94 Score=41.13 Aligned_cols=73 Identities=11% Similarity=0.108 Sum_probs=39.2
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC---CceeEEEEeccc
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS---QWSMAAVARSFS 171 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~---~~~~~a~~~s~d 171 (369)
-..++|.|++ . +...+..|.|++++ + + . ... ...+. .....+.+-.+++|+|+ +..++++. ...
T Consensus 33 P~~ia~~pdG----~-l~V~e~~g~I~~i~-~-g-~-~~~-~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~-~~~ 99 (352)
T 2ism_A 33 PWALAFLPDG----G-MLIAERPGRIRLFR-E-G-R-LST-YAELS--VYHRGESGLLGLALHPRFPQEPYVYAYR-TVA 99 (352)
T ss_dssp EEEEEECTTS----C-EEEEETTTEEEEEE-T-T-E-EEE-EEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEE-EEC
T ss_pred ceEEEEcCCC----e-EEEEeCCCeEEEEE-C-C-C-ccE-eecce--EeecCCCCceeEEECCCCCCCCEEEEEE-ecC
Confidence 4689999984 3 44446679999887 2 2 1 000 00111 11112345668999996 34444443 322
Q ss_pred -----ceEEEEeCC
Q 017601 172 -----KSIDVYDQD 180 (369)
Q Consensus 172 -----~~i~lwd~~ 180 (369)
..|..|+..
T Consensus 100 ~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 100 EGGLRNQVVRLRHL 113 (352)
T ss_dssp TTSSEEEEEEEEEC
T ss_pred CCCCccEEEEEEeC
Confidence 567777654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.93 E-value=1.2 Score=42.46 Aligned_cols=210 Identities=10% Similarity=0.062 Sum_probs=105.0
Q ss_pred eeEEEEee-cCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEE-------CCCCceeEEE
Q 017601 95 VQSIALAE-TDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCF-------SPSQWSMAAV 166 (369)
Q Consensus 95 V~~l~~s~-~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~p~~~~~~a~ 166 (369)
-..|+|+| ++ ..+.++-+....|++.|..... +. .+.... ...-..-.+++| ++++..++++
T Consensus 141 p~~la~dp~~~---~~Lyv~~~~~~~i~~ID~~~~~--v~----~l~~~~-~~~~~~p~~ia~~~~~~~~d~~G~~lyva 210 (496)
T 3kya_A 141 NGRLAFDPLNK---DHLYICYDGHKAIQLIDLKNRM--LS----SPLNIN-TIPTNRIRSIAFNKKIEGYADEAEYMIVA 210 (496)
T ss_dssp EEEEEEETTEE---EEEEEEEETEEEEEEEETTTTE--EE----EEECCT-TSSCSBEEEEEECCCBTTTBCTTCEEEEE
T ss_pred CCEEEEccCCC---CEEEEEECCCCeEEEEECCCCE--EE----EEEccC-ccccCCCcEEEEeecccccCCCCCEEEEE
Confidence 45788887 32 2344444444567766665331 10 110000 000112357999 9976645555
Q ss_pred Eeccc------ceEEEEeCCc--ce------EEEEeeeCCcceeeeccCCCCCCCCcEEE-EEcCCeEEEEeCC------
Q 017601 167 ARSFS------KSIDVYDQDI--HL------RTLRTLWYPSSLNFVQNLSPVNGGPNMLA-VTEGCQLTIWDLR------ 225 (369)
Q Consensus 167 ~~s~d------~~i~lwd~~~--~~------~~~~~~~~~~~v~~~~~~~~~~~~~~lla-~s~d~~v~iwD~~------ 225 (369)
. ..+ ..|.+++... .. +.+....++..+... ++++.|.. -..+++|..+|+.
T Consensus 211 d-~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavd------p~~g~LYvtd~~~g~V~r~d~~~~~~~~ 283 (496)
T 3kya_A 211 I-DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIH------PINGELYFNSYEKGQVFRLDLVDYFKTI 283 (496)
T ss_dssp E-CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEEC------TTTCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred e-CCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEc------CCCCeEEEEECCCCEEEEEecccccccc
Confidence 4 332 2366665322 11 233334455554432 33455554 4467889999987
Q ss_pred -cccCCce--------eee-eeccCCCcEEEEEECCCC-cEEE-EeCCCcEEEEeC--CCceee--eeccc------cc-
Q 017601 226 -MKENGGC--------LHR-ICGSVGDILYAVCSSSTG-NIAV-AGADRTVTIYDP--RRWSAL--SRWVH------CS- 282 (369)
Q Consensus 226 -~~~~~~~--------~~~-~~~~~~~~v~~v~~sp~g-~las-gs~D~~v~vwD~--~~~~~~--~~~~~------h~- 282 (369)
++....+ ... +........+.|+|+|+| .|.. -...+.|+.+|. .++... .++.+ ..
T Consensus 284 ~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~D 363 (496)
T 3kya_A 284 KNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRD 363 (496)
T ss_dssp HTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBC
T ss_pred cCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccC
Confidence 4421000 111 222112456899999999 5444 456778888554 333221 11211 10
Q ss_pred -------cCceE-EEEEc-------CCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 283 -------KYEIT-GLSFS-------SIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 283 -------~~~v~-~l~~s-------p~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
-..-. .+... + ++.++++=....+|+.++ ..+ .+.++-|
T Consensus 364 G~~~~a~f~~P~~gv~vd~~~~~~~~-~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG 417 (496)
T 3kya_A 364 DVGTEARMNNPCQGVFVKNPDYTGEE-EYDFYFVDRLNFCVRKVT-PEG-IVSTYAG 417 (496)
T ss_dssp CBGGGCBCSSEEEEEEEECTTCCSSC-CEEEEEEEGGGTEEEEEC-TTC-BEEEEEE
T ss_pred CcccccccCCCeEEEEEccccccccC-CCeEEEEECCCCEEEEEe-CCC-CEEEEec
Confidence 01223 34443 4 566666666678899988 344 4445543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.91 E-value=1.7 Score=43.92 Aligned_cols=192 Identities=8% Similarity=-0.047 Sum_probs=109.1
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEee-----e---CCcceeeeccCCCCCCCCcEEEEEcCCeEE
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRTL-----W---YPSSLNFVQNLSPVNGGPNMLAVTEGCQLT 220 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~-----~---~~~~v~~~~~~~~~~~~~~lla~s~d~~v~ 220 (369)
.+.++...+++ .+-++ ..++-|..|+... ....+... . ....+..+. .++ ++.|..++.++-|.
T Consensus 314 ~v~~i~~D~~g--~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~---~d~-~g~lWigt~~~Gl~ 386 (781)
T 3v9f_A 314 SARYIFQDSFN--NIWIG-TWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVC---DDG-QGKLWIGTDGGGIN 386 (781)
T ss_dssp CEEEEEECSSC--CEEEE-EBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEE---ECT-TSCEEEEEBSSCEE
T ss_pred eEEEEEEeCCC--CEEEE-ecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEE---EcC-CCCEEEEeCCCcEE
Confidence 46677777743 33444 4567788888653 22222110 0 111222222 112 35677777777799
Q ss_pred EEeCCcccCCceeeeee----ccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeecc--ccccCceEEEEEcCC
Q 017601 221 IWDLRMKENGGCLHRIC----GSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWV--HCSKYEITGLSFSSI 294 (369)
Q Consensus 221 iwD~~~~~~~~~~~~~~----~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~--~h~~~~v~~l~~sp~ 294 (369)
.||..++ .. ..+. .. ...|++++..++|.|-.|..++-+..+|.++++...-.. .. ...|.++...+
T Consensus 387 ~~~~~~~---~~-~~~~~~~~~~-~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~-~~~v~~i~~d~- 459 (781)
T 3v9f_A 387 VFENGKR---VA-IYNKENRELL-SNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNE-LLDVRVFYEDK- 459 (781)
T ss_dssp EEETTEE---EE-ECC-----CC-CSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTC-CCCEEEEEECT-
T ss_pred EEECCCC---eE-EEccCCCCCC-CcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCC-CCeEEEEEECC-
Confidence 9998754 22 2111 11 367999999888866667777779999987765432211 12 46799998888
Q ss_pred CCCEEEEEECCCeEEEEECcCCceeEEEEcC------CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 295 DSNYIYVQGVDYEVFCGQWRESSKVFAFRGD------SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 295 d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~------~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
++.+.+. .. +.+.++|..+++........ .....+....+|.+.+ |+.++-|..||..+++
T Consensus 460 ~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 460 NKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp TSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred CCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence 7765554 44 67889998876544333221 1112333334666555 4444447778876553
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.77 E-value=1.9 Score=43.52 Aligned_cols=193 Identities=9% Similarity=-0.013 Sum_probs=106.7
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCcce-EEEEee-e-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL-RTLRTL-W-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM 226 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~-~~~~~~-~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~ 226 (369)
.+.+++..+++ .+-++ ..++-+..||..... ..+... . ....+..+. .++ ++.|..++.++.+..+|.++
T Consensus 364 ~v~~i~~d~~g--~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~---~d~-~g~lWigt~~~Gl~~~~~~~ 436 (781)
T 3v9f_A 364 VVSSVCDDGQG--KLWIG-TDGGGINVFENGKRVAIYNKENRELLSNSVLCSL---KDS-EGNLWFGTYLGNISYYNTRL 436 (781)
T ss_dssp CEEEEEECTTS--CEEEE-EBSSCEEEEETTEEEEECC-----CCCSBEEEEE---ECT-TSCEEEEETTEEEEEECSSS
T ss_pred ceEEEEEcCCC--CEEEE-eCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE---ECC-CCCEEEEeccCCEEEEcCCC
Confidence 36677776633 33444 445668888875322 111100 0 112222222 112 35677777777899999876
Q ss_pred ccCCceeeeeec--cCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeec--cc--cccCceEEEEEcCCCCCEEE
Q 017601 227 KENGGCLHRICG--SVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRW--VH--CSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 227 ~~~~~~~~~~~~--~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~--~~--h~~~~v~~l~~sp~d~~~l~ 300 (369)
+ + +..+.. .....|+++...++|.|-.|.. +-|..||..+++..... .. .....|.++...+ ++.+.+
T Consensus 437 ~---~-~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi 510 (781)
T 3v9f_A 437 K---K-FQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI 510 (781)
T ss_dssp C---E-EEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE
T ss_pred C---c-EEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE
Confidence 5 3 233321 1136799999999885555555 55888998775433211 10 0035689999988 887665
Q ss_pred EEECCCeEEEEECcCCceeEEEEc-C----CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 301 VQGVDYEVFCGQWRESSKVFAFRG-D----SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 301 s~s~D~~i~vwd~~~~~~~~~~~g-~----~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
. ..++-+..+|.++++. ..+.. + .....+....+|.+.++. .+|.|..||.++++
T Consensus 511 g-t~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 511 G-TFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFD 570 (781)
T ss_dssp E-ESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred E-EcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCc
Confidence 4 4444577788776543 33321 1 111233333466665554 47766888877654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.85 Score=41.63 Aligned_cols=70 Identities=11% Similarity=0.161 Sum_probs=45.6
Q ss_pred CcEEEEEECCCC-cE-EEEeCCCcEEEEeCCC-cee--eeeccccccCceEEEEEcCCC-CCEEEEEECCC-eEEEEECc
Q 017601 242 DILYAVCSSSTG-NI-AVAGADRTVTIYDPRR-WSA--LSRWVHCSKYEITGLSFSSID-SNYIYVQGVDY-EVFCGQWR 314 (369)
Q Consensus 242 ~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~~-~~~--~~~~~~h~~~~v~~l~~sp~d-~~~l~s~s~D~-~i~vwd~~ 314 (369)
...+.++||||+ .| ++-+..+.|..||+.. ++. ...+ .. ....-.+++.+ + |++.+++..++ .|..||..
T Consensus 221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~-~g~PDGi~vD~-e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF-DTLVDNISVDP-VTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC-SSEEEEEEECT-TTCCEEEEEESCHHHHHSCCTT
T ss_pred cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC-CCCCceEEEeC-CCCcEEEEecCCceEEEEECCC
Confidence 567899999999 55 4445678999999863 322 2233 22 45567888887 6 88877776553 44444443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.084 Score=52.58 Aligned_cols=112 Identities=13% Similarity=-0.019 Sum_probs=71.8
Q ss_pred EEEECC-CC-cEEEEeCCC-----------cEEEEeCCCce--eeeeccccccCceEEEEEcCCCCCEEEEEEC-CCeEE
Q 017601 246 AVCSSS-TG-NIAVAGADR-----------TVTIYDPRRWS--ALSRWVHCSKYEITGLSFSSIDSNYIYVQGV-DYEVF 309 (369)
Q Consensus 246 ~v~~sp-~g-~lasgs~D~-----------~v~vwD~~~~~--~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~i~ 309 (369)
++++.| ++ .++.|+.+. .+.+||+.+++ .+..+.........++++.+ ++++++.||. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 556777 77 777777543 58899998744 33333222133345677888 9999999985 45899
Q ss_pred EEECcCCceeEEEEcC-CCee-eeeEcCCCCEEEEEe-CC-----CcEEEEECCCCc
Q 017601 310 CGQWRESSKVFAFRGD-SNWL-GFSKCSNRDVLGGWS-DS-----GSIFVADVVAKE 358 (369)
Q Consensus 310 vwd~~~~~~~~~~~g~-~~~~-~~~~~~d~~~l~sgs-~d-----g~I~iWd~~~~~ 358 (369)
+||..+.+-...-.-+ .++. ....++++++++.|+ .+ ..+.+||..+.+
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 9999875433221111 1222 233345889988888 44 579999998764
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.74 Score=42.97 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=70.6
Q ss_pred CCcEEEEEcCCeEEEEeCCcccC-C--------ceeeeeecc-----CCCcEEEEEECCCC----cEEEEeCCCcEEEEe
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKEN-G--------GCLHRICGS-----VGDILYAVCSSSTG----NIAVAGADRTVTIYD 268 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~-~--------~~~~~~~~~-----~~~~v~~v~~sp~g----~lasgs~D~~v~vwD 268 (369)
.+.++|...+.+|.|-.+..+.. . -..+.+... ...+|..+-|+|-+ .|++-..|++|++||
T Consensus 76 sG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yD 155 (452)
T 3pbp_A 76 SGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFD 155 (452)
T ss_dssp TSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEE
T ss_pred CCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEE
Confidence 46888888888999998873310 0 012233321 03679999999987 789999999999999
Q ss_pred CCCc--eeeeecc---------ccccCceEEEEEcCCCCCEEEEEE--CCCeEEEE
Q 017601 269 PRRW--SALSRWV---------HCSKYEITGLSFSSIDSNYIYVQG--VDYEVFCG 311 (369)
Q Consensus 269 ~~~~--~~~~~~~---------~h~~~~v~~l~~sp~d~~~l~s~s--~D~~i~vw 311 (369)
+... ++. .+. .. ...|.+++|.+ ++-.|...+ ..|.|+-.
T Consensus 156 l~~s~~~P~-~L~k~~~~fg~d~~-~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 156 ILNSQEKPI-VLNKPNNSFGLDAR-VNDITDLEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTCTTSCCE-EESCCCSEEESCSS-CCCEEEEEECT-TSSCEEEEECTTSCEEEEE
T ss_pred cccCCCCCc-chhccccccCCCcc-cceEEEEEEcC-CCcEEEEEecCCCCCEEEE
Confidence 9862 222 222 22 36799999999 888888766 77877654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.41 E-value=1.4 Score=39.43 Aligned_cols=193 Identities=11% Similarity=0.048 Sum_probs=96.7
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
+.+.+..|.+.+++ .+++.+ ..|.++. .... +.++..... + ....+.++++.|. ..+++++ ..
T Consensus 120 ~~~~~~~i~~~~~~----~~~~~~-~~g~v~~--S~Dg-----G~tW~~~~~--~-~~~~~~~~~~~~~-~~~~~~g-~~ 182 (327)
T 2xbg_A 120 LPGSPRLIKALGNG----SAEMIT-NVGAIYR--TKDS-----GKNWQALVQ--E-AIGVMRNLNRSPS-GEYVAVS-SR 182 (327)
T ss_dssp CSSCEEEEEEEETT----EEEEEE-TTCCEEE--ESST-----TSSEEEEEC--S-CCCCEEEEEECTT-SCEEEEE-TT
T ss_pred CCCCeEEEEEECCC----CEEEEe-CCccEEE--EcCC-----CCCCEEeec--C-CCcceEEEEEcCC-CcEEEEE-CC
Confidence 34557788876652 445544 3565543 2222 112221110 0 1123567899984 4455555 44
Q ss_pred cceEEEEeC-CcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee-c--cCCCcEEE
Q 017601 171 SKSIDVYDQ-DIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC-G--SVGDILYA 246 (369)
Q Consensus 171 d~~i~lwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~-~--~~~~~v~~ 246 (369)
....+-.|. +..-+.+.. .....+..+.. .++ +.+++++.+|.+.+++...+ +.-..+. . .....+++
T Consensus 183 G~~~~S~d~gG~tW~~~~~-~~~~~~~~~~~---~~~-g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~~~~~~~~~ 254 (327)
T 2xbg_A 183 GSFYSTWEPGQTAWEPHNR-TTSRRLHNMGF---TPD-GRLWMIVNGGKIAFSDPDNS---ENWGELLSPLRRNSVGFLD 254 (327)
T ss_dssp SSEEEEECTTCSSCEEEEC-CSSSCEEEEEE---CTT-SCEEEEETTTEEEEEETTEE---EEECCCBCTTSSCCSCEEE
T ss_pred CcEEEEeCCCCCceeECCC-CCCCccceeEE---CCC-CCEEEEeCCceEEEecCCCC---CeeEeccCCcccCCcceEE
Confidence 344444454 333222221 11222222221 233 46777788888887742223 2211111 1 10245899
Q ss_pred EEECCCCcEEEEeCCCcEEEEeCC---CceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 247 VCSSSTGNIAVAGADRTVTIYDPR---RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 247 v~~sp~g~lasgs~D~~v~vwD~~---~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
++|.+++.++.++.++.|. +... +++.+...... ...+.++.|.+ ++ .++.++.+++|.-++
T Consensus 255 v~~~~~~~~~~~g~~g~i~-~S~DgG~tW~~~~~~~~~-~~~~~~v~~~~-~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 255 LAYRTPNEVWLAGGAGALL-CSQDGGQTWQQDVDVKKV-PSNFYKILFFS-PD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EEESSSSCEEEEESTTCEE-EESSTTSSCEECGGGTTS-SSCCCEEEEEE-TT-EEEEECSTTEEEEEC
T ss_pred EEecCCCEEEEEeCCCeEE-EeCCCCcccEEcCccCCC-CCCeEEEEEEC-CC-ceEEEcCCceEEEEc
Confidence 9999888444444577663 3333 34444332233 45678898875 44 466777899887665
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=1.9 Score=42.48 Aligned_cols=191 Identities=10% Similarity=0.002 Sum_probs=104.3
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCCcc--eEEEEe--eeCCcceeeeccCCCCCCCCcEE-EEEcCCeEEEEeCCc
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQDIH--LRTLRT--LWYPSSLNFVQNLSPVNGGPNML-AVTEGCQLTIWDLRM 226 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~--~~~~~~--~~~~~~v~~~~~~~~~~~~~~ll-a~s~d~~v~iwD~~~ 226 (369)
.+++|++.++.++.+- ...+.|..++.+.. ...+.. ...|..+++-. .++.|. +-...+.|.+.|+..
T Consensus 43 ~~ld~~~~~~~ly~sD-~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~------~~~~ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 43 AAVDFVFSHGLIYWSD-VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW------LGEKLYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp EEEEEETTTTEEEEEE-TTTTEEEEEEC-----CEEEECSSCSCEEEEEEET------TTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEeCCCEEEEEE-CCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe------cCCEEEEEeCCCCEEEEEECCC
Confidence 4799999666555544 56778888876532 111111 12344444322 233343 344578999999875
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC--CCcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEE
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA--DRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~--D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
. ....+..........|++.|.+ .|..... ...|...++.. .....+. .. -.....|++++ +.+.|+.+
T Consensus 116 ~----~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~-~~~P~Glald~-~~~~LY~a 188 (619)
T 3s94_A 116 S----LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSE-IYWPNGLTLDY-EEQKLYWA 188 (619)
T ss_dssp C----SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSS-CSSEEEEEEET-TTTEEEEE
T ss_pred C----CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEEeCC-CCCCcEEEEEc-cCCEEEEE
Confidence 4 2222221113557789999975 5544443 45676667653 3222222 23 34578999999 65555544
Q ss_pred -ECCCeEEEEECcCCceeEEEE---cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 303 -GVDYEVFCGQWRESSKVFAFR---GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 303 -s~D~~i~vwd~~~~~~~~~~~---g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
...+.|...|+.......... .|. .++... .+.+..+-...+.|...|..+++.
T Consensus 189 D~~~~~I~~~~~dG~~~~~~~~~~~~~P--~gi~~~-~~~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 189 DAKLNFIHKSNLDGTNRQAVVKGSLPHP--FALTLF-EDILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp ETTTCCEEEESSSCCEEC---------C--CCEEES-SSEEEEECTTTCSEEEEESSSCCC
T ss_pred eCCCCeEEEecCCCCccEEEEeCCCCCc--eEEEEe-CCEEEEecCCCCEEEEEECCCCcc
Confidence 456789999987643322222 122 233322 234445555678899999877754
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=3.3 Score=40.73 Aligned_cols=197 Identities=10% Similarity=-0.046 Sum_probs=102.0
Q ss_pred ceeeEEEEeecCCCCceEEEEEec-CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDS-YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~-~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
.....|+|++.+ ..|.-.|. .++|+.++.+.... . ...+.. + -..-.++|+.+.+..++.+- ...
T Consensus 40 ~~~~~ld~~~~~----~~ly~sD~~~~~I~r~~~~g~~~-~---~~v~~~---~--~~~P~GlAvD~~~~~ly~~d-~~~ 105 (619)
T 3s94_A 40 EDAAAVDFVFSH----GLIYWSDVSEEAIKRTEFNKTES-V---QNVVVS---G--LLSPDGLACDWLGEKLYWTD-SET 105 (619)
T ss_dssp SCEEEEEEETTT----TEEEEEETTTTEEEEEEC------C---EEEECS---S--CSCEEEEEEETTTTEEEEEE-TTT
T ss_pred CceEEEEEEeCC----CEEEEEECCCCeEEEEEccCCCc-e---EEEEeC---C--CCCcCeEEEEecCCEEEEEe-CCC
Confidence 345688888753 24443443 45677776653310 0 001110 0 01234899998666555555 778
Q ss_pred ceEEEEeCCcc-eEEEE--eeeCCcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 172 KSIDVYDQDIH-LRTLR--TLWYPSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 172 ~~i~lwd~~~~-~~~~~--~~~~~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+.|.+.+.+.. .+.+. ....|..+.+-+ .++.|.-+. ..+.|...++... ....+........+.
T Consensus 106 ~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp------~~g~ly~tD~g~~~~I~r~~~dG~----~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 106 NRIEVSNLDGSLRKVLFWQELDQPRAIALDP------SSGFMYWTDWGEVPKIERAGMDGS----SRFIIINSEIYWPNG 175 (619)
T ss_dssp TEEEEEETTSCSCEEEECSSCSCCCCEEEET------TTTEEEEEECSSSCEEEEEETTSC----SCEEEECSSCSSEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCCCCceEEEec------CCCeEEEeccCCCCEEEEEECCCC----ceEEEEeCCCCCCcE
Confidence 89999987643 22332 223455555543 233443332 2356666666532 222222111356789
Q ss_pred EEECCCC-cE-EEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 247 VCSSSTG-NI-AVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 247 v~~sp~g-~l-asgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
|++++++ .| .+-...+.|...|+..........+. .....+|++.. + ..+.+-...+.|...|..++
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~gi~~~~-~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFE-D-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESS-S-EEEEECTTTCSEEEEESSSC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC-CCCceEEEEeC-C-EEEEecCCCCEEEEEECCCC
Confidence 9999876 44 44455778999998653332222222 22235677766 4 44444445678888887664
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=94.53 E-value=2.5 Score=37.78 Aligned_cols=187 Identities=9% Similarity=-0.034 Sum_probs=94.0
Q ss_pred eeEEEECCCCceeEEEEecccceE-EEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEE-EeCCccc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSI-DVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTI-WDLRMKE 228 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i-~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~i-wD~~~~~ 228 (369)
+..+.+.+ +...++++ . ++.| +-.|.+..-..+.. .....+..+.. .++ +.+++++.++.+.. +|- .+.
T Consensus 124 ~~~i~~~~-~~~~~~~~-~-~g~v~~S~DgG~tW~~~~~-~~~~~~~~~~~---~~~-~~~~~~g~~G~~~~S~d~-gG~ 194 (327)
T 2xbg_A 124 PRLIKALG-NGSAEMIT-N-VGAIYRTKDSGKNWQALVQ-EAIGVMRNLNR---SPS-GEYVAVSSRGSFYSTWEP-GQT 194 (327)
T ss_dssp EEEEEEEE-TTEEEEEE-T-TCCEEEESSTTSSEEEEEC-SCCCCEEEEEE---CTT-SCEEEEETTSSEEEEECT-TCS
T ss_pred eEEEEEEC-CCCEEEEe-C-CccEEEEcCCCCCCEEeec-CCCcceEEEEE---cCC-CcEEEEECCCcEEEEeCC-CCC
Confidence 34577655 33455554 3 4444 44455544333321 11122222221 232 45666666555433 442 121
Q ss_pred CCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeecc----ccccCceEEEEEcCCCCCEEEEEEC
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWV----HCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~----~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
.-+.+. ... ...+..+++.+++.+..++.+|.+.+.+...++.-..+. .+ ...+.++.+.+ ++..++.+ .
T Consensus 195 tW~~~~-~~~--~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~g-~ 268 (327)
T 2xbg_A 195 AWEPHN-RTT--SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRN-SVGFLDLAYRT-PNEVWLAG-G 268 (327)
T ss_dssp SCEEEE-CCS--SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSC-CSCEEEEEESS-SSCEEEEE-S
T ss_pred ceeECC-CCC--CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccC-CcceEEEEecC-CCEEEEEe-C
Confidence 112221 112 367889999999955566678888877422232222211 12 34588999998 77766654 5
Q ss_pred CCeEEEEECcCCceeEEEEc----CCCeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 305 DYEVFCGQWRESSKVFAFRG----DSNWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 305 D~~i~vwd~~~~~~~~~~~g----~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
++.+ ++....++.-..+.. +..+..+... ++..++.++.+|.|.-++-
T Consensus 269 ~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~-~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 269 AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF-SPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE-ETTEEEEECSTTEEEEECC
T ss_pred CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE-CCCceEEEcCCceEEEEcC
Confidence 7766 344444433222221 1222333333 3455777788998877653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=4.4 Score=39.98 Aligned_cols=193 Identities=13% Similarity=-0.002 Sum_probs=111.2
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEe--eeCCcceeeeccCCCCCCCCcE-EEEEcCCeEEEEeCCc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRT--LWYPSSLNFVQNLSPVNGGPNM-LAVTEGCQLTIWDLRM 226 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l-la~s~d~~v~iwD~~~ 226 (369)
..+++|++.++.++.+- ..++.|..++.+. ....+.. ...|..+++-. .++.| .+-...+.|.+.|+..
T Consensus 39 ~~~l~~d~~~~~lywtD-~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~------~~~~LY~tD~~~~~I~v~~~dG 111 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTD-ISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDW------LGKNLYWADTGTNRIEVSKLDG 111 (628)
T ss_dssp EEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEET------TTTEEEEEETTTTEEEEEETTS
T ss_pred eEEEEEECCCCEEEEEE-CCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEe------CCCEEEEEECCCCEEEEEecCC
Confidence 45899999666655555 6788898888653 2222211 12344444422 12333 4444567899999865
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe--CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEE-
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG--ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ- 302 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs--~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~- 302 (369)
. . ...+..........|++.|.. .|.... ..+.|...++.... ...+... -.....|++++ +++.|+.+
T Consensus 112 ~---~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~-~~~P~GlalD~-~~~~LY~aD 184 (628)
T 4a0p_A 112 Q---H-RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPN-VGRANGLTIDY-AKRRLYWTD 184 (628)
T ss_dssp T---T-CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECS-CSSEEEEEEET-TTTEEEEEE
T ss_pred C---c-EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECC-CCCcceEEEcc-ccCEEEEEE
Confidence 4 2 222221113567899999854 554444 35677777775432 2232233 45678999999 66665555
Q ss_pred ECCCeEEEEECcCCceeEEEEcC-CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 303 GVDYEVFCGQWRESSKVFAFRGD-SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~~~~g~-~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
...+.|...|+..... ..+... ....++... .+.+.++-...+.|...|..+++.
T Consensus 185 ~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~-~~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 185 LDTNLIESSNMLGLNR-EVIADDLPHPFGLTQY-QDYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp TTTTEEEEEETTSCSC-EEEEECCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCEEEEEcCCCCce-EEeeccCCCceEEEEE-CCEEEEecCCCCEEEEEECCCCCc
Confidence 4567899999976433 233221 111333322 344455555678898888777753
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=2.9 Score=37.87 Aligned_cols=60 Identities=10% Similarity=-0.034 Sum_probs=33.9
Q ss_pred CceEEEEEc-------CCCCCEEEEEECCCeEEEEECcCC-cee--EEEE-c-CCCeeeeeEcCCCCEEEEEe
Q 017601 284 YEITGLSFS-------SIDSNYIYVQGVDYEVFCGQWRES-SKV--FAFR-G-DSNWLGFSKCSNRDVLGGWS 344 (369)
Q Consensus 284 ~~v~~l~~s-------p~d~~~l~s~s~D~~i~vwd~~~~-~~~--~~~~-g-~~~~~~~~~~~d~~~l~sgs 344 (369)
.....+.|. . ++.++++.-..+.|...++... +.. ..+. + ..+...+...+||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~-~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGL-RGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGG-TTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCccc-CCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 457788883 3 6777766666778888888753 221 2222 1 12223444455776655543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.26 E-value=1.2 Score=39.02 Aligned_cols=141 Identities=14% Similarity=0.065 Sum_probs=72.1
Q ss_pred CCcEEEEEcC-----CeEEEEeCCcccCCceee--eeeccCCCcEEEEEECCCC-cEEEEeCC-------CcEEEEeCCC
Q 017601 207 GPNMLAVTEG-----CQLTIWDLRMKENGGCLH--RICGSVGDILYAVCSSSTG-NIAVAGAD-------RTVTIYDPRR 271 (369)
Q Consensus 207 ~~~lla~s~d-----~~v~iwD~~~~~~~~~~~--~~~~~~~~~v~~v~~sp~g-~lasgs~D-------~~v~vwD~~~ 271 (369)
+..++.++.+ ..+.+||+.+. +... .+... .....++.+ ++ .++.|+.+ ..+.+||+.+
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSN---EWFHVAPMNTR-RSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTT---EEEEECCCSSC-CBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCC---eEeecCCCCCc-ccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence 3445555544 35788998865 2221 11111 111222222 56 56666542 4588999887
Q ss_pred --ceeeeeccccccCceEEEEEcCCCCCEEEEEECC-----CeEEEEECcCCceeEEEEc-CCCe-eeeeEcCCCCEEEE
Q 017601 272 --WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD-----YEVFCGQWRESSKVFAFRG-DSNW-LGFSKCSNRDVLGG 342 (369)
Q Consensus 272 --~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D-----~~i~vwd~~~~~~~~~~~g-~~~~-~~~~~~~d~~~l~s 342 (369)
++.+..+... ......+.+ ++.+++.|+.+ ..+.++|..+.+-...-.- ..+. .... ..++.+++.
T Consensus 183 ~~W~~~~~~p~~-r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~ 257 (302)
T 2xn4_A 183 NEWTYIAEMSTR-RSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVV 257 (302)
T ss_dssp TEEEEECCCSSC-CBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEE
T ss_pred CcEEECCCCccc-cccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEE
Confidence 3444443322 222233333 55777777765 3688999887543221110 0000 1111 126677777
Q ss_pred EeCCC-----cEEEEECCCCc
Q 017601 343 WSDSG-----SIFVADVVAKE 358 (369)
Q Consensus 343 gs~dg-----~I~iWd~~~~~ 358 (369)
|+.++ .+.+||.++.+
T Consensus 258 GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 258 GGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBCSSSBCCCEEEEETTTTE
T ss_pred CCcCCCcccccEEEEcCCCCe
Confidence 76553 48999987764
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=4.6 Score=39.80 Aligned_cols=195 Identities=9% Similarity=-0.072 Sum_probs=107.3
Q ss_pred ceeeEEEEeecCCCCceEEEEEe-cCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVD-SYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d-~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
.....|+|++.+ ..+.-.| ..+.|+.++++.... ...+.... ..-.++|+.+.+..++.+- ...
T Consensus 37 ~~~~~l~~d~~~----~~lywtD~~~~~I~r~~~~g~~~-----~~v~~~g~-----~~P~GlAvD~~~~~LY~tD-~~~ 101 (628)
T 4a0p_A 37 KEASALDFDVTD----NRIYWTDISLKTISRAFMNGSAL-----EHVVEFGL-----DYPEGMAVDWLGKNLYWAD-TGT 101 (628)
T ss_dssp SCEEEEEEETTT----TEEEEEETTTTEEEEEETTSCSC-----EEEECSSC-----SCCCEEEEETTTTEEEEEE-TTT
T ss_pred CceEEEEEECCC----CEEEEEECCCCeEEEEECCCCCc-----EEEEeCCC-----CCcceEEEEeCCCEEEEEE-CCC
Confidence 346789998863 2444333 456777777653311 00111000 0123799988666665655 677
Q ss_pred ceEEEEeCCcc-eEEEE--eeeCCcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 172 KSIDVYDQDIH-LRTLR--TLWYPSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 172 ~~i~lwd~~~~-~~~~~--~~~~~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+.|.+.+.+.. .+.+. ....|..+..- |..+.|.-+. ..+.|...++... . ...+... ....+.
T Consensus 102 ~~I~v~~~dG~~~~~l~~~~l~~P~~iavd------p~~G~lY~tD~g~~~~I~r~~~dG~---~-~~~l~~~-~~~P~G 170 (628)
T 4a0p_A 102 NRIEVSKLDGQHRQVLVWKDLDSPRALALD------PAEGFMYWTEWGGKPKIDRAAMDGS---E-RTTLVPN-VGRANG 170 (628)
T ss_dssp TEEEEEETTSTTCEEEECSSCCCEEEEEEE------TTTTEEEEEECSSSCEEEEEETTSC---S-CEEEECS-CSSEEE
T ss_pred CEEEEEecCCCcEEEEEeCCCCCcccEEEc------cCCCeEEEeCCCCCCEEEEEeCCCC---c-eEEEECC-CCCcce
Confidence 89999987532 22221 12234444443 2233333332 2467777777644 1 2222222 367889
Q ss_pred EEECCCC-cEE-EEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 247 VCSSSTG-NIA-VAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 247 v~~sp~g-~la-sgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
|++++++ .|. +=...+.|..+|+..... ..+... .....++++.. +.++.+-...+.|...|..+++
T Consensus 171 lalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 171 LTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-LPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-CSCEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred EEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-CCCceEEEEEC--CEEEEecCCCCEEEEEECCCCC
Confidence 9999976 544 445677899999865332 233333 33456777754 3444454456788888876543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.73 E-value=2.7 Score=36.62 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=68.6
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC-----CcEEEEeCCCc--eeeeeccccccCceEE
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD-----RTVTIYDPRRW--SALSRWVHCSKYEITG 288 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D-----~~v~vwD~~~~--~~~~~~~~h~~~~v~~ 288 (369)
..+.+||+.+.. ...+..+... ...-.++.+ ++ .++.|+.+ ..+.+||+.+. +.+..+... ...-..
T Consensus 128 ~~~~~~d~~~~~-W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~ 202 (301)
T 2vpj_A 128 TSMERYDPNIDQ-WSMLGDMQTA-REGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATK-RSGAGV 202 (301)
T ss_dssp CEEEEEETTTTE-EEEEEECSSC-CBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSC-CBSCEE
T ss_pred ceEEEEcCCCCe-EEECCCCCCC-cccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcc-cccceE
Confidence 468899987651 1112222111 111222222 56 66667654 46889998763 444333322 222233
Q ss_pred EEEcCCCCCEEEEEECC-----CeEEEEECcCCceeEEEEcC-CCe-eeeeEcCCCCEEEEEeCC-----CcEEEEECCC
Q 017601 289 LSFSSIDSNYIYVQGVD-----YEVFCGQWRESSKVFAFRGD-SNW-LGFSKCSNRDVLGGWSDS-----GSIFVADVVA 356 (369)
Q Consensus 289 l~~sp~d~~~l~s~s~D-----~~i~vwd~~~~~~~~~~~g~-~~~-~~~~~~~d~~~l~sgs~d-----g~I~iWd~~~ 356 (369)
+.+ ++.+++.|+.+ ..+.+||+.+.+-...-.-. .+. .... ..++.+++.|+.+ ..|.+||.++
T Consensus 203 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 203 ALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT-VLRGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp EEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred EEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE-EECCEEEEEcCcCCCcccccEEEEcCCC
Confidence 333 55777777764 46889999875432221101 100 1111 1266777777655 4678889876
Q ss_pred Cc
Q 017601 357 KE 358 (369)
Q Consensus 357 ~~ 358 (369)
.+
T Consensus 279 ~~ 280 (301)
T 2vpj_A 279 DS 280 (301)
T ss_dssp TE
T ss_pred Ce
Confidence 53
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.68 E-value=1.6 Score=38.25 Aligned_cols=180 Identities=11% Similarity=0.011 Sum_probs=87.4
Q ss_pred CceeEEEEeccc----ceEEEEeCCcceE-EEEeeeCC---cceeeeccCCCCCCCCcEEEEEcC------CeEEEEeCC
Q 017601 160 QWSMAAVARSFS----KSIDVYDQDIHLR-TLRTLWYP---SSLNFVQNLSPVNGGPNMLAVTEG------CQLTIWDLR 225 (369)
Q Consensus 160 ~~~~~a~~~s~d----~~i~lwd~~~~~~-~~~~~~~~---~~v~~~~~~~~~~~~~~lla~s~d------~~v~iwD~~ 225 (369)
++.+++.+ +.+ ..+.+||...... .+.....+ ..+..+ ++..++.++.+ ..+.+||..
T Consensus 55 ~~~lyv~G-G~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 55 DNVVYILG-GSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-------EGKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp TTEEEEEC-CBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-------TTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred CCEEEEEe-CCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-------CCEEEEECCCCCCCcEeeeEEEEeCC
Confidence 34566666 443 5688888764332 22111111 111111 23344445543 468899988
Q ss_pred cccCCceeee--eeccCCCcEEEEEECCCC-cEEEEeC---------CCcEEEEeCCCc--eeeeeccccccCceEEEEE
Q 017601 226 MKENGGCLHR--ICGSVGDILYAVCSSSTG-NIAVAGA---------DRTVTIYDPRRW--SALSRWVHCSKYEITGLSF 291 (369)
Q Consensus 226 ~~~~~~~~~~--~~~~~~~~v~~v~~sp~g-~lasgs~---------D~~v~vwD~~~~--~~~~~~~~h~~~~v~~l~~ 291 (369)
+. +.... +... ...-.++.+ ++ .++.|+. -..+.+||+.+. +.+..+... ...-..+.+
T Consensus 127 ~~---~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~ 199 (306)
T 3ii7_A 127 TE---SWHTKPSMLTQ-RCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA-RKNHGLVFV 199 (306)
T ss_dssp TT---EEEEECCCSSC-CBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE
T ss_pred CC---ceEeCCCCcCC-cceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccch-hhcceEEEE
Confidence 75 32211 1111 111122222 56 5566653 345889998874 444333322 222223333
Q ss_pred cCCCCCEEEEEECC-----CeEEEEECcCCceeEEEEcC-CCe-eeeeEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 017601 292 SSIDSNYIYVQGVD-----YEVFCGQWRESSKVFAFRGD-SNW-LGFSKCSNRDVLGGWSDS-----GSIFVADVVAKE 358 (369)
Q Consensus 292 sp~d~~~l~s~s~D-----~~i~vwd~~~~~~~~~~~g~-~~~-~~~~~~~d~~~l~sgs~d-----g~I~iWd~~~~~ 358 (369)
++++++.|+.+ ..+.++|+.+.+-...-.-. .+. .... ..++.+++.|+.+ ..+.+||.++.+
T Consensus 200 ---~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 200 ---KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA-AVGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp ---TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE-EETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ---CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE-EECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 45677777654 35788888775322110000 000 1111 1167777777754 568889987754
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.55 Score=42.54 Aligned_cols=190 Identities=7% Similarity=-0.048 Sum_probs=96.3
Q ss_pred eeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEE--EcCCeEEEEeCCcccCCceeeeee
Q 017601 162 SMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAV--TEGCQLTIWDLRMKENGGCLHRIC 237 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~--s~d~~v~iwD~~~~~~~~~~~~~~ 237 (369)
.++.++ +.|+.|.-+|.. +....+... ....+..... +..+.++.++.+ +.||.|..+|..++ .....+.
T Consensus 11 ~~V~v~-t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~-~~~~~~~~~~vv~p~~dG~l~a~~~~~G---~~~~~~~ 84 (339)
T 2be1_A 11 DILIAA-DVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQE-PSRLETYETLIIEPFGDGNIYYFNAHQG---LQKLPLS 84 (339)
T ss_dssp EEEEEE-ETTSCEEEEETTTTEEEEEECGG-GSCCSEECCC-SCTTTSSEEEEECCSTTTEEEEEETTTE---EEEEEEE
T ss_pred CEEEEE-eCCCeEEEEECCCCcEEEEecCC-ccCCcEEecC-CccccCCcEEEEEECCCCEEEEEECCCC---cEEeeec
Confidence 355666 788988888864 333333221 0011111111 111123345554 57999999998877 3333332
Q ss_pred ccC---CCcEEE---EEE------CCCCcEEEEeCCCcEEEEeCCCceeeeecccccc-Cce-----EEEE---EcC-CC
Q 017601 238 GSV---GDILYA---VCS------SSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSK-YEI-----TGLS---FSS-ID 295 (369)
Q Consensus 238 ~~~---~~~v~~---v~~------sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~-~~v-----~~l~---~sp-~d 295 (369)
... ..++.. ... +.++.+++|+.++.+...|+++|+.+-++..... ..+ .+.. +.. ..
T Consensus 85 ~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~ 164 (339)
T 2be1_A 85 IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQEC 164 (339)
T ss_dssp HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------
T ss_pred cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccC
Confidence 210 112221 000 1344889999999999999999999887763201 100 0111 100 02
Q ss_pred CCEEEEEECCCeEEEEECcCCce----eEEEEcCCCeeee----eEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 296 SNYIYVQGVDYEVFCGQWRESSK----VFAFRGDSNWLGF----SKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~~~~----~~~~~g~~~~~~~----~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+..++.+..++.+.+-+ ++++. ...+.....-..+ ....|+.+ +.++.||.|...|..+|+.
T Consensus 165 ~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 165 ENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred CCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 35677777788777766 33321 1111111100000 00124565 4478899999999887764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.66 E-value=2.7 Score=36.80 Aligned_cols=180 Identities=9% Similarity=-0.008 Sum_probs=87.1
Q ss_pred ceeEEEEecc-cceEEEEeCCcceEE-EEeeeCC---cceeeeccCCCCCCCCcEEEEEcC----CeEEEEeCCcccCCc
Q 017601 161 WSMAAVARSF-SKSIDVYDQDIHLRT-LRTLWYP---SSLNFVQNLSPVNGGPNMLAVTEG----CQLTIWDLRMKENGG 231 (369)
Q Consensus 161 ~~~~a~~~s~-d~~i~lwd~~~~~~~-~~~~~~~---~~v~~~~~~~~~~~~~~lla~s~d----~~v~iwD~~~~~~~~ 231 (369)
+.+++.++.. ...+.+||....... +.....+ ..+..+ ++..++.++.+ ..+.+||..+. +
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~d~~~~---~ 81 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW-------DNVVYILGGSQLFPIKRMDCYNVVKD---S 81 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE-------TTEEEEECCBSSSBCCEEEEEETTTT---E
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE-------CCEEEEEeCCCCCCcceEEEEeCCCC---e
Confidence 4455665322 467888887643322 1111111 111111 23344445543 57889998876 3
Q ss_pred eee--eeeccCCCcEEEEEECCCC-cEEEEeCC------CcEEEEeCCCc--eeeeeccccccCceEEEEEcCCCCCEEE
Q 017601 232 CLH--RICGSVGDILYAVCSSSTG-NIAVAGAD------RTVTIYDPRRW--SALSRWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 232 ~~~--~~~~~~~~~v~~v~~sp~g-~lasgs~D------~~v~vwD~~~~--~~~~~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
... .+... .....++.+ ++ .++.|+.+ ..+.+||+.+. +.+..+... ...-..+.+ ++.+++
T Consensus 82 W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~---~~~iyv 154 (306)
T 3ii7_A 82 WYSKLGPPTP-RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ-RCSHGMVEA---NGLIYV 154 (306)
T ss_dssp EEEEECCSSC-CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE---TTEEEE
T ss_pred EEECCCCCcc-ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC-cceeEEEEE---CCEEEE
Confidence 221 11111 122222223 56 66777755 46889998874 344333322 222222332 556666
Q ss_pred EEEC---------CCeEEEEECcCCceeEEEEc-CCCe-eeeeEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 017601 301 VQGV---------DYEVFCGQWRESSKVFAFRG-DSNW-LGFSKCSNRDVLGGWSDS-----GSIFVADVVAKE 358 (369)
Q Consensus 301 s~s~---------D~~i~vwd~~~~~~~~~~~g-~~~~-~~~~~~~d~~~l~sgs~d-----g~I~iWd~~~~~ 358 (369)
.|+. -..+.+||..+.+-...-.- ..+. .... ..++.+++.|+.+ ..+.+||..+.+
T Consensus 155 ~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 155 CGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLV-FVKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp ECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred ECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEE-EECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 6664 34588899887533222110 0000 1111 1156666666543 468888887653
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.54 E-value=3.8 Score=35.65 Aligned_cols=135 Identities=12% Similarity=-0.021 Sum_probs=68.6
Q ss_pred CeEEEEeCCcccC--CceeeeeeccCCCcEEEEEECCCC-cEEEEeCC-----CcEEEEeCCC--ceeeeeccccccCce
Q 017601 217 CQLTIWDLRMKEN--GGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD-----RTVTIYDPRR--WSALSRWVHCSKYEI 286 (369)
Q Consensus 217 ~~v~iwD~~~~~~--~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D-----~~v~vwD~~~--~~~~~~~~~h~~~~v 286 (369)
..+.+||..+... ...+..+... .....++.+ ++ .++.|+.+ ..+.+||+.+ ++.+..+... ...-
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~-r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~ 153 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVR-RGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-REGA 153 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSC-CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-CBSC
T ss_pred ceEEEEECCCCCCCeeEECCCCCCC-ccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-cccc
Confidence 4689999987621 1122212111 122222222 56 66666643 3688999876 4444443322 2222
Q ss_pred EEEEEcCCCCCEEEEEECC-----CeEEEEECcCCceeEEEEc-CCCeeeeeEcCCCCEEEEEeCC-----CcEEEEECC
Q 017601 287 TGLSFSSIDSNYIYVQGVD-----YEVFCGQWRESSKVFAFRG-DSNWLGFSKCSNRDVLGGWSDS-----GSIFVADVV 355 (369)
Q Consensus 287 ~~l~~sp~d~~~l~s~s~D-----~~i~vwd~~~~~~~~~~~g-~~~~~~~~~~~d~~~l~sgs~d-----g~I~iWd~~ 355 (369)
..+.+ ++.+++.|+.+ ..+.++|+.+.+-...-.- ..+........++.+++.|+.+ ..+.+||.+
T Consensus 154 ~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 230 (301)
T 2vpj_A 154 GLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIR 230 (301)
T ss_dssp EEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred eEEEE---CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCC
Confidence 22332 56777777765 4588889877543222100 0100000111266677777654 468899987
Q ss_pred CCc
Q 017601 356 AKE 358 (369)
Q Consensus 356 ~~~ 358 (369)
+.+
T Consensus 231 ~~~ 233 (301)
T 2vpj_A 231 TDS 233 (301)
T ss_dssp TTE
T ss_pred CCc
Confidence 654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.96 E-value=3.5 Score=35.92 Aligned_cols=134 Identities=14% Similarity=0.015 Sum_probs=66.2
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC-----cEEEEeCCCc--eeeeeccccccCceEE
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR-----TVTIYDPRRW--SALSRWVHCSKYEITG 288 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~-----~v~vwD~~~~--~~~~~~~~h~~~~v~~ 288 (369)
..+.+||..+.+ ...+..+... .....++.+ ++ .++.|+.++ .+.+||+.+. +.+..+... ...-..
T Consensus 77 ~~~~~~d~~~~~-W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~ 151 (302)
T 2xn4_A 77 RTVDSYDPVKDQ-WTSVANMRDR-RSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR-RSSVGV 151 (302)
T ss_dssp CCEEEEETTTTE-EEEECCCSSC-CBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC-CBSCEE
T ss_pred cceEEECCCCCc-eeeCCCCCcc-ccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc-ccCceE
Confidence 368889988651 1111111111 112222222 56 666676553 5778998763 444333322 222222
Q ss_pred EEEcCCCCCEEEEEECC-------CeEEEEECcCCceeEEEEc-CCCeeeeeEcCCCCEEEEEeCC-----CcEEEEECC
Q 017601 289 LSFSSIDSNYIYVQGVD-------YEVFCGQWRESSKVFAFRG-DSNWLGFSKCSNRDVLGGWSDS-----GSIFVADVV 355 (369)
Q Consensus 289 l~~sp~d~~~l~s~s~D-------~~i~vwd~~~~~~~~~~~g-~~~~~~~~~~~d~~~l~sgs~d-----g~I~iWd~~ 355 (369)
+.+ ++.+++.|+.+ ..+.++|+.+.+-...-.- ..+........++.+++.|+.+ ..+.+||.+
T Consensus 152 ~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 228 (302)
T 2xn4_A 152 GVV---GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPT 228 (302)
T ss_dssp EEE---TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETT
T ss_pred EEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCC
Confidence 332 55677776643 3588889877543222100 0000000111266777777654 468889987
Q ss_pred CCc
Q 017601 356 AKE 358 (369)
Q Consensus 356 ~~~ 358 (369)
+.+
T Consensus 229 ~~~ 231 (302)
T 2xn4_A 229 TNA 231 (302)
T ss_dssp TTE
T ss_pred CCC
Confidence 653
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=91.59 E-value=3.5 Score=38.47 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=63.8
Q ss_pred EcCCeEEEEeCCcccCCceeeeeeccC---CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCce----------e--eee
Q 017601 214 TEGCQLTIWDLRMKENGGCLHRICGSV---GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS----------A--LSR 277 (369)
Q Consensus 214 s~d~~v~iwD~~~~~~~~~~~~~~~~~---~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~----------~--~~~ 277 (369)
..++.||.-++... ..-+.+...+ ...|..+..||+| +||..+ +..|.|-.+..+. . ...
T Consensus 38 a~~n~iR~~~i~~~---~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~t 113 (452)
T 3pbp_A 38 IQDNIIRWYNVLTD---SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFH 113 (452)
T ss_dssp EETTEEEEEETTTC---SSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEE
T ss_pred EECCEEEEEECCCC---CcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeE
Confidence 34567777777644 2223333220 2356779999999 666654 6689888876321 0 112
Q ss_pred ccc------cccCceEEEEEcCC--CCCEEEEEECCCeEEEEECcC
Q 017601 278 WVH------CSKYEITGLSFSSI--DSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 278 ~~~------h~~~~v~~l~~sp~--d~~~l~s~s~D~~i~vwd~~~ 315 (369)
+.- . ..+|..+.|+|. .+..|++--.|++||+||+..
T Consensus 114 y~l~~~~~~~-~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 114 YSIDEEEVGP-KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EEGGGCC--C-CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred EEcCCcccCC-CCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 221 2 467999999994 356899999999999999986
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.48 E-value=7.4 Score=34.74 Aligned_cols=137 Identities=15% Similarity=0.088 Sum_probs=60.5
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC------CCcEEEEeC--CC--ceeeeeccccccCc
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA------DRTVTIYDP--RR--WSALSRWVHCSKYE 285 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~------D~~v~vwD~--~~--~~~~~~~~~h~~~~ 285 (369)
..+.+||..+.. ...+..+... ...-.+++.. ++ .++.|+. ...+.+||+ .+ ++.+..+... ...
T Consensus 168 ~~v~~yd~~~~~-W~~~~~~p~~-~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~-~~~ 243 (357)
T 2uvk_A 168 KFLLSFDPSTQQ-WSYAGESPWY-GTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSP-DGV 243 (357)
T ss_dssp CEEEEEETTTTE-EEEEEECSSC-CCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTT-TCC
T ss_pred ccEEEEeCCCCc-EEECCCCCCC-CcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCC-ccc
Confidence 578999988751 1122222111 0110222222 45 6666653 335777876 43 4444443222 111
Q ss_pred eEEEEEcCCCCCEEEEEECC----------------------CeEEEEECcCCceeEE--EEcCCCeeeeeEcCCCCEEE
Q 017601 286 ITGLSFSSIDSNYIYVQGVD----------------------YEVFCGQWRESSKVFA--FRGDSNWLGFSKCSNRDVLG 341 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D----------------------~~i~vwd~~~~~~~~~--~~g~~~~~~~~~~~d~~~l~ 341 (369)
....+... ++.+++.|+.+ ..+.+||+.+.+-... +.... ........++.+++
T Consensus 244 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~i~v 321 (357)
T 2uvk_A 244 AGGFAGIS-NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGR-AYGVSLPWNNSLLI 321 (357)
T ss_dssp BSCEEEEE-TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCC-BSSEEEEETTEEEE
T ss_pred ccceEEEE-CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCc-ccceeEEeCCEEEE
Confidence 11111122 55777777642 2577888877543222 21111 00011122677777
Q ss_pred EEeCCC------cEEEEECCCCcc
Q 017601 342 GWSDSG------SIFVADVVAKEN 359 (369)
Q Consensus 342 sgs~dg------~I~iWd~~~~~~ 359 (369)
.|+.++ .|.+.++++++-
T Consensus 322 ~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 322 IGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp EEEECGGGCEEEEEEEEEC-CCSC
T ss_pred EeeeCCCCCEeeeEEEEEEcCcEe
Confidence 777543 355568877753
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=7.7 Score=35.02 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=56.4
Q ss_pred CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee--ccCCCcEEEEEECCC----CcEEEEeC----
Q 017601 191 YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC--GSVGDILYAVCSSST----GNIAVAGA---- 260 (369)
Q Consensus 191 ~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~--~~~~~~v~~v~~sp~----g~lasgs~---- 260 (369)
.|..+.+.. + +.|+.+..++.|+++| ..+. ..+..+. .........|+|+|+ +.|.....
T Consensus 30 ~P~~ia~~p------d-G~l~V~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 30 VPWSIAPLG------G-GRYLVTERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp CEEEEEEEE------T-TEEEEEETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred CCeEEEEcC------C-CeEEEEeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 455555554 3 4566666679999997 3341 2232221 111256889999998 54433322
Q ss_pred C----CcEEEEeCCCc-------eee-eeccccccCceEEEEEcCCCCCEEEEEE
Q 017601 261 D----RTVTIYDPRRW-------SAL-SRWVHCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 261 D----~~v~vwD~~~~-------~~~-~~~~~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
+ ..|..|+.... +.+ ..+..........+.|.| ||.+.++.+
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G 153 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTG 153 (354)
T ss_dssp GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECC
T ss_pred CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEEC
Confidence 3 56777776543 111 112211011346799999 998877754
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.38 E-value=4.2 Score=35.73 Aligned_cols=133 Identities=11% Similarity=0.018 Sum_probs=66.6
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC------CCcEEEEeCCC--ceeeeeccccccCceE
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA------DRTVTIYDPRR--WSALSRWVHCSKYEIT 287 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~------D~~v~vwD~~~--~~~~~~~~~h~~~~v~ 287 (369)
..+.+||..+.. -..+..+... ...-.++. -++ .++.|+. -..+.+||+.+ ++.+..+... ...-.
T Consensus 117 ~~~~~~d~~~~~-W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~ 191 (315)
T 4asc_A 117 DSVMCYDRLSFK-WGESDPLPYV-VYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA-RSLFG 191 (315)
T ss_dssp CCEEEEETTTTE-EEECCCCSSC-CBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC-CBSCE
T ss_pred ceEEEECCCCCc-EeECCCCCCc-ccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc-hhceE
Confidence 468899988751 1111111111 11112222 355 6666665 24689999887 4444433322 22223
Q ss_pred EEEEcCCCCCEEEEEECCC-----eEEEEECcCCceeEEEEcC-CCe-eeeeEcCCCCEEEEEeCC--------------
Q 017601 288 GLSFSSIDSNYIYVQGVDY-----EVFCGQWRESSKVFAFRGD-SNW-LGFSKCSNRDVLGGWSDS-------------- 346 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~-----~i~vwd~~~~~~~~~~~g~-~~~-~~~~~~~d~~~l~sgs~d-------------- 346 (369)
.+.+ ++++++.|+.++ .+.++|+.+.+-...-.-. .+. .... ..++.+++.|+.+
T Consensus 192 ~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~ 267 (315)
T 4asc_A 192 ATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV-SLVGTLYAIGGFATLETESGELVPTEL 267 (315)
T ss_dssp EEEE---TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEEEE
T ss_pred EEEE---CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE-EECCEEEEECCccccCcCCcccccccc
Confidence 3333 557778887654 5788888775332221100 100 0111 1266776666653
Q ss_pred CcEEEEECCCCc
Q 017601 347 GSIFVADVVAKE 358 (369)
Q Consensus 347 g~I~iWd~~~~~ 358 (369)
..|.+||.++.+
T Consensus 268 ~~v~~yd~~~~~ 279 (315)
T 4asc_A 268 NDIWRYNEEEKK 279 (315)
T ss_dssp EEEEEEETTTTE
T ss_pred CcEEEecCCCCh
Confidence 247788887653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=90.89 E-value=3.4 Score=36.20 Aligned_cols=131 Identities=11% Similarity=-0.014 Sum_probs=67.5
Q ss_pred CeEEEEeCCcccCCceee--eeeccCCCcEEEEEECCCC-cEEEEeCC-----CcEEEEeCCCc--eeeeeccccccCce
Q 017601 217 CQLTIWDLRMKENGGCLH--RICGSVGDILYAVCSSSTG-NIAVAGAD-----RTVTIYDPRRW--SALSRWVHCSKYEI 286 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~--~~~~~~~~~v~~v~~sp~g-~lasgs~D-----~~v~vwD~~~~--~~~~~~~~h~~~~v 286 (369)
..+.+||..+. +... .+... ...-.++.+ ++ .++.|+.+ ..+.+||+.+. +.+..+... ...-
T Consensus 137 ~~~~~yd~~~~---~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~ 209 (308)
T 1zgk_A 137 NSVERYEPERD---EWHLVAPMLTR-RIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGA 209 (308)
T ss_dssp CCEEEEETTTT---EEEECCCCSSC-CBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSC
T ss_pred ccEEEECCCCC---eEeECCCCCcc-ccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccc
Confidence 46888998865 2221 11111 112222333 56 66666654 46889998774 333333322 2222
Q ss_pred EEEEEcCCCCCEEEEEECC-----CeEEEEECcCCceeEEEEcCC-Ce-eeeeEcCCCCEEEEEeCC-----CcEEEEEC
Q 017601 287 TGLSFSSIDSNYIYVQGVD-----YEVFCGQWRESSKVFAFRGDS-NW-LGFSKCSNRDVLGGWSDS-----GSIFVADV 354 (369)
Q Consensus 287 ~~l~~sp~d~~~l~s~s~D-----~~i~vwd~~~~~~~~~~~g~~-~~-~~~~~~~d~~~l~sgs~d-----g~I~iWd~ 354 (369)
..+.+ ++.+++.|+.+ ..+.+||+.+.+-...-.-.. +. .... ..++.+++.|+.+ ..+.+||.
T Consensus 210 ~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 210 GVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp EEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEET
T ss_pred eEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEE-EECCEEEEEcCcCCCcccceEEEEcC
Confidence 33333 45777777765 568899988753322110000 00 1111 1266777777644 45788888
Q ss_pred CCCc
Q 017601 355 VAKE 358 (369)
Q Consensus 355 ~~~~ 358 (369)
++.+
T Consensus 286 ~~~~ 289 (308)
T 1zgk_A 286 DTDT 289 (308)
T ss_dssp TTTE
T ss_pred CCCE
Confidence 7653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=4.3 Score=34.31 Aligned_cols=136 Identities=13% Similarity=0.079 Sum_probs=71.7
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCc---eeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccccc
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGG---CLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSK 283 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~---~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~ 283 (369)
..|+.+.+| +++.=-+..+.+.. ...++-...=..+..++|+|+| +.++ .+|.+.-.+..+... ..+.+. .
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~-~~W~~s-~ 79 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN-DNWMGR-A 79 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTT-CCHHHH-C
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCc-cccccc-c
Confidence 456667777 65554444332101 1222222101467799999999 4455 677666666544221 111111 1
Q ss_pred Cc--------eEEEEEcCCCCCEEEEEECCCeEEEEECcCCcee-----EEEEcCCCeeee---eEcCCCCEEEEEeCCC
Q 017601 284 YE--------ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKV-----FAFRGDSNWLGF---SKCSNRDVLGGWSDSG 347 (369)
Q Consensus 284 ~~--------v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~-----~~~~g~~~~~~~---~~~~d~~~l~sgs~dg 347 (369)
.. -.++.|.| +|.+.++ .|+.|+-++-.+.... ...-+...|..+ ...++|.+.+.. |+
T Consensus 80 t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg 154 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ 154 (236)
T ss_dssp EEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred cEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence 12 37899999 9988877 6699988876431110 111222233333 335677666555 77
Q ss_pred cEEEEE
Q 017601 348 SIFVAD 353 (369)
Q Consensus 348 ~I~iWd 353 (369)
.++-+.
T Consensus 155 ~lyr~~ 160 (236)
T 1tl2_A 155 QFYKAL 160 (236)
T ss_dssp EEEEEC
T ss_pred cEEecC
Confidence 765443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.36 E-value=8.7 Score=34.59 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=56.0
Q ss_pred CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee--ccCCCcEEEEEECCC----CcEE-EEeCC--
Q 017601 191 YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC--GSVGDILYAVCSSST----GNIA-VAGAD-- 261 (369)
Q Consensus 191 ~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~--~~~~~~v~~v~~sp~----g~la-sgs~D-- 261 (369)
.|..+.+. +++ .++.+..++.|.+++ .++ ...+..+. .........|+|+|+ +.|. +-...
T Consensus 32 ~P~~ia~~------pdG-~l~V~e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~ 101 (352)
T 2ism_A 32 VPWALAFL------PDG-GMLIAERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG 101 (352)
T ss_dssp CEEEEEEC------TTS-CEEEEETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred CceEEEEc------CCC-eEEEEeCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence 44555554 344 466666679999998 331 12222221 111356889999998 4433 33322
Q ss_pred ---CcEEEEeCCCc-----eee-eecc---ccccCceEEEEEcCCCCCEEEEEE
Q 017601 262 ---RTVTIYDPRRW-----SAL-SRWV---HCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 262 ---~~v~vwD~~~~-----~~~-~~~~---~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
+.|..|+.... +.+ ..+. +. ......++|.| ||.+.++.+
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~-~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 102 GLRNQVVRLRHLGERGVLDRVVLDGIPARPHG-LHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp SSEEEEEEEEECSSCEEEEEEEEEEECCCTTC-CCCCCCEEECT-TSCEEEECC
T ss_pred CCccEEEEEEeCCCCcCceEEEEEeCCCCCCC-CcCCceEEECC-CCCEEEEEC
Confidence 56777887643 112 2233 11 11346899999 998777754
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.29 E-value=8.7 Score=33.67 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=53.0
Q ss_pred CCC-cEEEEeC------CCcEEEEeCCCc--eeeeeccccccCceEEEEEcCCCCCEEEEEECC-----CeEEEEECcCC
Q 017601 251 STG-NIAVAGA------DRTVTIYDPRRW--SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD-----YEVFCGQWRES 316 (369)
Q Consensus 251 p~g-~lasgs~------D~~v~vwD~~~~--~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D-----~~i~vwd~~~~ 316 (369)
.++ .++.|+. -..+.+||+.+. +.+..+... ...-..+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP-RSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCC-cccceEEEE---CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 356 6666653 245899998874 444333322 222223332 55777777754 35678888775
Q ss_pred ceeEE--EEcCCCeeeeeEcCCCCEEEEEeCC--------------CcEEEEECCCCc
Q 017601 317 SKVFA--FRGDSNWLGFSKCSNRDVLGGWSDS--------------GSIFVADVVAKE 358 (369)
Q Consensus 317 ~~~~~--~~g~~~~~~~~~~~d~~~l~sgs~d--------------g~I~iWd~~~~~ 358 (369)
+-... +.......... ..++.+++.|+.+ ..+.+||.++.+
T Consensus 233 ~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 233 KWEVMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp CEEECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred eEEECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 32221 11000000111 1256666666543 457888887653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=89.98 E-value=3.9 Score=35.87 Aligned_cols=133 Identities=13% Similarity=0.073 Sum_probs=66.5
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC-----CcEEEEeCCCc--eeeeeccccccCceEE
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD-----RTVTIYDPRRW--SALSRWVHCSKYEITG 288 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D-----~~v~vwD~~~~--~~~~~~~~h~~~~v~~ 288 (369)
..+.+||..+.. ...+..+... .....++.+ ++ .++.|+.+ ..+.+||+.+. +.+..+... ...-..
T Consensus 90 ~~~~~~d~~~~~-W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~ 164 (308)
T 1zgk_A 90 SALDCYNPMTNQ-WSPCAPMSVP-RNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-RIGVGV 164 (308)
T ss_dssp CCEEEEETTTTE-EEECCCCSSC-CBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-CBSCEE
T ss_pred ceEEEECCCCCe-EeECCCCCcC-ccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc-ccceEE
Confidence 468889988651 0111111111 122222333 56 66666643 46889998774 334333322 222233
Q ss_pred EEEcCCCCCEEEEEECC-----CeEEEEECcCCceeEE--EEcCCCeeeeeEcCCCCEEEEEeCC-----CcEEEEECCC
Q 017601 289 LSFSSIDSNYIYVQGVD-----YEVFCGQWRESSKVFA--FRGDSNWLGFSKCSNRDVLGGWSDS-----GSIFVADVVA 356 (369)
Q Consensus 289 l~~sp~d~~~l~s~s~D-----~~i~vwd~~~~~~~~~--~~g~~~~~~~~~~~d~~~l~sgs~d-----g~I~iWd~~~ 356 (369)
+.+ ++.+++.|+.+ ..+.++|+.+.+-... +.......... ..++.+++.|+.+ ..+.+||+++
T Consensus 165 ~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 165 AVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp EEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred EEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE-EECCEEEEEeCCCCCCccceEEEEeCCC
Confidence 333 45677777765 4588888876432211 10000001111 1166676666654 5688999876
Q ss_pred Cc
Q 017601 357 KE 358 (369)
Q Consensus 357 ~~ 358 (369)
.+
T Consensus 241 ~~ 242 (308)
T 1zgk_A 241 ET 242 (308)
T ss_dssp TE
T ss_pred Cc
Confidence 53
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.02 E-value=11 Score=32.92 Aligned_cols=182 Identities=12% Similarity=0.007 Sum_probs=86.4
Q ss_pred eeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc----C-------CeEEEEeCCcccCC
Q 017601 162 SMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE----G-------CQLTIWDLRMKENG 230 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~----d-------~~v~iwD~~~~~~~ 230 (369)
.+++.+ + ..+..||.............+..-....... .++..++.++. + ..+..||..+.
T Consensus 6 ~l~~~G-G--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (315)
T 4asc_A 6 LIFMIS-E--EGAVAYDPAANECYCASLSSQVPKNHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS--- 77 (315)
T ss_dssp EEEEEE-T--TEEEEEETTTTEEEEEECCCCSCSSEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT---
T ss_pred EEEEEc-C--CceEEECCCCCeEecCCCCCCCCccceEEEE--ECCEEEEEcCcccCCCCCccccccceEEecCCCC---
Confidence 455555 4 5788999875544332221111111111001 13445666662 1 13778898875
Q ss_pred ceee--eeeccCCCcEEEEEECCCC-cEEEEeCC--------CcEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCC
Q 017601 231 GCLH--RICGSVGDILYAVCSSSTG-NIAVAGAD--------RTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSN 297 (369)
Q Consensus 231 ~~~~--~~~~~~~~~v~~v~~sp~g-~lasgs~D--------~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~ 297 (369)
+... .+... .....++.+ ++ .++.|+.+ ..+.+||+.+ ++.+..+... ...-..+.+ +++
T Consensus 78 ~W~~~~~~p~~-r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~---~~~ 150 (315)
T 4asc_A 78 EWLGMPPLPSP-RCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV-VYGHTVLSH---MDL 150 (315)
T ss_dssp EEEECCCBSSC-EESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE---TTE
T ss_pred eEEECCCCCcc-hhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc-ccceeEEEE---CCE
Confidence 2211 11111 011112222 55 66666632 4688999887 4444443322 222223332 557
Q ss_pred EEEEEEC-C-----CeEEEEECcCCceeEEEEc-CCCeeeeeEcCCCCEEEEEeCCC-----cEEEEECCCCc
Q 017601 298 YIYVQGV-D-----YEVFCGQWRESSKVFAFRG-DSNWLGFSKCSNRDVLGGWSDSG-----SIFVADVVAKE 358 (369)
Q Consensus 298 ~l~s~s~-D-----~~i~vwd~~~~~~~~~~~g-~~~~~~~~~~~d~~~l~sgs~dg-----~I~iWd~~~~~ 358 (369)
+++.|+. + ..+.++|..+.+-...-.- ..+........++.+++.|+.++ .+.+||.++.+
T Consensus 151 iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 7777776 2 4688888877532211100 00000001112667766666554 57888887653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=87.76 E-value=28 Score=37.82 Aligned_cols=192 Identities=9% Similarity=0.139 Sum_probs=106.1
Q ss_pred EEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCcee
Q 017601 154 LCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCL 233 (369)
Q Consensus 154 l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~ 233 (369)
.-.+|. ..++|.- . ..++.|||++...+ +....-+..+.|..|.. + ..++--.+..|.-|++.... .++
T Consensus 71 AIMnP~-~~iiALr-a-g~~lQiFnl~~k~k-lks~~~~e~VvfWkWis--~---~~l~lVT~~aVyHW~~~~~s--~P~ 139 (1630)
T 1xi4_A 71 AIMNPA-SKVIALK-A-GKTLQIFNIEMKSK-MKAHTMTDDVTFWKWIS--L---NTVALVTDNAVYHWSMEGES--QPV 139 (1630)
T ss_pred hccCCC-cceEEEe-c-CCeEEEeehHHhhh-hcccccCCCceEEEecC--C---CeeEEEcCCeEEEeccCCCC--ccH
Confidence 557884 4577765 3 68999999863321 22333445677888743 2 34443345679999996422 455
Q ss_pred eeeeccC---CCcEEEEEECCCC-cEE-EEe------CCCcEEEEeCCCceeeeeccccccCceEEEEEc--CCCCCEEE
Q 017601 234 HRICGSV---GDILYAVCSSSTG-NIA-VAG------ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFS--SIDSNYIY 300 (369)
Q Consensus 234 ~~~~~~~---~~~v~~v~~sp~g-~la-sgs------~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~s--p~d~~~l~ 300 (369)
+.+..+. +..|-.-.-+++. +++ +|= -.|.+.+|...++ ..+.+.|| ...-..+... + .+..|.
T Consensus 140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegh-a~~F~~~~~~~~~-~~~~l~ 216 (1630)
T 1xi4_A 140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH-AASFAQFKMEGNA-EESTLF 216 (1630)
T ss_pred HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHh-HhhhheeccCCCC-CCceEE
Confidence 4444321 3556666778888 443 332 3578889987653 33455666 4433333321 2 122222
Q ss_pred E-EEC---CCeEEEEECcCC---ceeE------EEEcCC---Ce-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 301 V-QGV---DYEVFCGQWRES---SKVF------AFRGDS---NW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 301 s-~s~---D~~i~vwd~~~~---~~~~------~~~g~~---~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+ +.. .+.+.|-++... ...+ .+.... .+ ..+..++.-.+++-.+.-|.|.++|+.|+..
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 2 211 257888887542 1111 111110 00 1111133456788889999999999999864
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=86.76 E-value=35 Score=36.19 Aligned_cols=134 Identities=13% Similarity=0.181 Sum_probs=75.3
Q ss_pred CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCC
Q 017601 216 GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSID 295 (369)
Q Consensus 216 d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d 295 (369)
.|.|.+|++..+ +.+.++..... +++++++-- +|+|++|- ..+|++||+...+.+..-..+ -..|..+.... .
T Consensus 863 ~Gri~vf~v~~~-kL~lv~~~~v~--g~v~al~~~-~g~Lla~i-g~~l~vy~l~~~~~L~~~~~~-~~~i~~~~l~~-~ 935 (1158)
T 3ei3_A 863 QGRIVVFQYSDG-KLQTVAEKEVK--GAVYSMVEF-NGKLLASI-NSTVRLYEWTTEKELRTECNH-YNNIMALYLKT-K 935 (1158)
T ss_dssp CEEEEEEEEETT-EEEEEEEEEES--SCEEEEEEE-TTEEEEEE-TTEEEEEEECTTSCEEEEEEE-CCCSCEEEEEE-E
T ss_pred ceEEEEEEEECC-EEEEEEEEEcC--CcCEEEeee-CCEEEEEc-CCEEEEEECCCCceEEEEeec-cccEEEEEEec-c
Confidence 368999998632 22334433344 889998632 35555544 478999999865544311111 11233333333 4
Q ss_pred CCEEEEEECCCeEEEEECcCC-ceeEEEEc--CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 296 SNYIYVQGVDYEVFCGQWRES-SKVFAFRG--DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~~-~~~~~~~g--~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
+++++.|..-..|.+...+.. ..+..+.. +.+|..-...-+...++.+..+|.|.+.....
T Consensus 936 ~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 936 GDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred CCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 578888877666666555432 22222222 33333222122556888899999999987654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=86.20 E-value=8 Score=37.44 Aligned_cols=122 Identities=13% Similarity=-0.018 Sum_probs=72.8
Q ss_pred eEEEEeCCcccC--CceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCcee-------------eeeccc
Q 017601 218 QLTIWDLRMKEN--GGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSA-------------LSRWVH 280 (369)
Q Consensus 218 ~v~iwD~~~~~~--~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~-------------~~~~~~ 280 (369)
.|.+-|.+.... ...+..+... ...-.+.++||| .+++|--+.+|.|+|+++... .....
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~p--ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e- 375 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVP--KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE- 375 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEES--SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-
T ss_pred CeeEEccccccccCCceEEEEeCC--CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-
Confidence 466777765110 0222333333 445568899999 455566799999999985211 11222
Q ss_pred cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC----------ceeEEEEcCCCeeeee------EcCCCCEEEEEe
Q 017601 281 CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES----------SKVFAFRGDSNWLGFS------KCSNRDVLGGWS 344 (369)
Q Consensus 281 h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~----------~~~~~~~g~~~~~~~~------~~~d~~~l~sgs 344 (369)
+.-.-...+|.+ +|....|--.|..|--|++... ..+..+.-|-...... .-+||++|++..
T Consensus 376 -~GlGPlHt~Fd~-~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 376 -LGLGPLHTTFDG-RGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp -CCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred -CCCcccEEEECC-CCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 123467899999 9966666678999999999752 3444454332111111 134788888765
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.17 E-value=21 Score=31.17 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=52.4
Q ss_pred CC-cEEEEeCC-------CcEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCCEEEEEECC------CeEEEEECcC
Q 017601 252 TG-NIAVAGAD-------RTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD------YEVFCGQWRE 315 (369)
Q Consensus 252 ~g-~lasgs~D-------~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D------~~i~vwd~~~ 315 (369)
++ .++.|+.+ ..+.+||+.+ ++.+..+... ...-..+. . ++.+++.|+.+ ..+.++|..+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK-VYGHNVIS--H-NGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC-EESCEEEE--E-TTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc-ccccEEEE--E-CCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 56 66667654 3578899886 3444333322 11112222 2 56777777642 3588899887
Q ss_pred CceeEEEEc-CCCe-eeeeEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 017601 316 SSKVFAFRG-DSNW-LGFSKCSNRDVLGGWSDS-----GSIFVADVVAKE 358 (369)
Q Consensus 316 ~~~~~~~~g-~~~~-~~~~~~~d~~~l~sgs~d-----g~I~iWd~~~~~ 358 (369)
.+-...-.- ..+. .... ..++.+++.|+.+ ..+.+||.++.+
T Consensus 185 ~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 185 GDWKDLAPMKTPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp TEEEEECCCSSCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CEEEECCCCCCCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 543222110 0100 1111 1266666666543 356788887653
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.97 E-value=1.6 Score=39.46 Aligned_cols=107 Identities=6% Similarity=-0.068 Sum_probs=65.5
Q ss_pred CcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEc--CCCCCEEEEE-ECCCeEEEEECcCCceeEEEEcCCCe-
Q 017601 253 GNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFS--SIDSNYIYVQ-GVDYEVFCGQWRESSKVFAFRGDSNW- 328 (369)
Q Consensus 253 g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~s--p~d~~~l~s~-s~D~~i~vwd~~~~~~~~~~~g~~~~- 328 (369)
+.++.++.||.|.-+|..+|+.+-++......++....-. +.++..++.. ..||.+..+|..++.....+.-..-.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 3788999999999999999988766653201233222111 1122333333 57999999998877544433211100
Q ss_pred -eeeeE----c-------CCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 329 -LGFSK----C-------SNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 329 -~~~~~----~-------~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
..+.. . ..+..++.|+.+|.++..|+++|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 01110 0 1466889999999999999988864
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=82.17 E-value=33 Score=32.14 Aligned_cols=194 Identities=9% Similarity=0.098 Sum_probs=112.6
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
+.-.+|. ..++|.- . ..++.|||++...+ ++.+.-+..+.|..|.. ...++--.+..|.-|++.... .+
T Consensus 70 sAIMnP~-~~iiALr-a-g~~lQiFnle~K~k-lks~~~~e~VvfWkWis-----~~~l~lVT~taVyHWsi~~~s--~P 138 (494)
T 1bpo_A 70 SAIMNPA-SKVIALK-A-GKTLQIFNIEMKSK-MKAHTMTDDVTFWKWIS-----LNTVALVTDNAVYHWSMEGES--QP 138 (494)
T ss_dssp EEEECSS-SSCEEEE-E-TTEEEEEETTTTEE-EEEEECSSCCCEEEEEE-----TTEEEEECSSEEEEEESSSSC--CC
T ss_pred eeeeCCC-CcEEEEe-c-CCeEEEEchHHhhh-hcceecCCCceEEEecC-----CCeEEEEcCCeeEEecccCCC--Cc
Confidence 4668884 4577775 3 68999999975332 33344455677777642 244444445689999997532 56
Q ss_pred eeeeeccC---CCcEEEEEECCCC-cEE-EEe------CCCcEEEEeCCCceeeeeccccccCceEEEEEcCC-CC-CEE
Q 017601 233 LHRICGSV---GDILYAVCSSSTG-NIA-VAG------ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI-DS-NYI 299 (369)
Q Consensus 233 ~~~~~~~~---~~~v~~v~~sp~g-~la-sgs------~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~-d~-~~l 299 (369)
++.+..+. +..|-...-+++. +++ +|- -.|.+.+|..+++ ..+.+.|| ...-..+.+... .+ ..+
T Consensus 139 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh-aa~F~~~~~~g~~~~~~lf 216 (494)
T 1bpo_A 139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH-AASFAQFKMEGNAEESTLF 216 (494)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS-EEEEEEEECTTCSSEEEEE
T ss_pred hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee-eeeeEEEecCCCCCCceEE
Confidence 66665432 4667777788988 443 332 2467889987753 44566777 444433333220 11 223
Q ss_pred EEEECC---CeEEEEECcCC---ce------eEEEEcCC---C-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 300 YVQGVD---YEVFCGQWRES---SK------VFAFRGDS---N-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 300 ~s~s~D---~~i~vwd~~~~---~~------~~~~~g~~---~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+-+... +.++|-++... .. ...+-... . -..+..+..-.+++--+.-|.|+++|++++..
T Consensus 217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 333332 67888888542 11 11110000 0 01122233556888899999999999999864
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=81.86 E-value=28 Score=31.13 Aligned_cols=58 Identities=7% Similarity=-0.007 Sum_probs=31.6
Q ss_pred ceEEEEEcC------CCCCEEEEEECCCeEEEEECcCCceeEE--E-Ec-CCCeeeeeEcCCCCEEEE
Q 017601 285 EITGLSFSS------IDSNYIYVQGVDYEVFCGQWRESSKVFA--F-RG-DSNWLGFSKCSNRDVLGG 342 (369)
Q Consensus 285 ~v~~l~~sp------~d~~~l~s~s~D~~i~vwd~~~~~~~~~--~-~g-~~~~~~~~~~~d~~~l~s 342 (369)
....+.|.. .++.++++.-..+.|...++..++.... + .+ ..+...+...+||.+.++
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~ 339 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVL 339 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEE
Confidence 466777753 1466666665677787777775433221 2 11 112244555567776554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 369 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.002 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.004 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.3 bits (90), Expect = 4e-04
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 6/121 (4%)
Query: 148 EGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGG 207
E + +CF P+ + A + + + D L T + ++S G
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG---ITSVSFSKSG 282
Query: 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIY 267
+LA + +WD + G + + +A D + I+
Sbjct: 283 RLLLAGYDDFNCNVWDAL---KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 268 D 268
+
Sbjct: 340 N 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.8 bits (86), Expect = 0.002
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 5/116 (4%)
Query: 190 WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249
S + GP +L+ + + +WD+ G CL + G + +
Sbjct: 200 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS---TGMCLMTLVGHDNWVRGVLFH 256
Query: 250 SSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD 305
S I D+T+ ++D + + + +T L F + Y+ VD
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-VTSLDFHK-TAPYVVTGSVD 310
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.3 bits (82), Expect = 0.004
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 196 NFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNI 255
N+V+ + +GG +L+ + L +WD + N C+ + + + +
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYK---NKRCMKTLNAHEHFVTSLDFHKTAPYV 304
Query: 256 AVAGADRTVTIYD 268
D+TV +++
Sbjct: 305 VTGSVDQTVKVWE 317
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 369 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.84 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.83 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.81 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.81 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.8 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.72 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.71 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.7 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.69 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.68 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.64 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.56 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.55 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.5 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.47 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.4 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.32 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.21 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.18 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.89 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.86 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.8 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.8 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.74 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.65 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.57 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.53 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.31 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.31 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.26 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.23 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.19 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.14 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.08 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.0 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.99 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.94 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.8 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.67 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.28 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.02 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.65 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.45 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.39 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.89 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.61 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.17 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.02 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.68 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 93.0 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.95 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 92.88 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.7 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 92.46 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 91.27 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 91.1 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 90.81 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 89.24 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.97 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 86.48 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 83.97 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 83.8 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 83.69 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 80.31 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.6e-33 Score=251.66 Aligned_cols=244 Identities=12% Similarity=0.065 Sum_probs=186.6
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|++.|.+++|+|++ .++++++.+|.|++|++....... ...+..|. ..+.+++|+|++. +++++
T Consensus 54 ~~~H~~~v~~~~~sp~g----~~latg~~dg~i~iwd~~~~~~~~---~~~~~~~~-----~~v~~v~~s~d~~-~l~~~ 120 (311)
T d1nr0a1 54 YTEHSHQTTVAKTSPSG----YYCASGDVHGNVRIWDTTQTTHIL---KTTIPVFS-----GPVKDISWDSESK-RIAAV 120 (311)
T ss_dssp ECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEESSSTTCCE---EEEEECSS-----SCEEEEEECTTSC-EEEEE
T ss_pred EcCCCCCEEEEEEeCCC----CeEeccccCceEeeeeeecccccc---cccccccc-----Ccccccccccccc-ccccc
Confidence 46899999999999984 789999999999999998653211 11222222 3467899999655 45554
Q ss_pred -ecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCc-EEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 168 -RSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPN-MLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 168 -~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~-lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
.+.++.+++|+.+. ....+ ..+...+..+.+ +|++.. +++++.|++|++||++++ +....+..+ ...
T Consensus 121 ~~~~~~~~~v~~~~~~~~~~~l--~~h~~~v~~v~~---~~~~~~~l~sgs~d~~i~i~d~~~~---~~~~~~~~~-~~~ 191 (311)
T d1nr0a1 121 GEGRERFGHVFLFDTGTSNGNL--TGQARAMNSVDF---KPSRPFRIISGSDDNTVAIFEGPPF---KFKSTFGEH-TKF 191 (311)
T ss_dssp ECCSSCSEEEEETTTCCBCBCC--CCCSSCEEEEEE---CSSSSCEEEEEETTSCEEEEETTTB---EEEEEECCC-SSC
T ss_pred cccccccccccccccccccccc--cccccccccccc---cccceeeeccccccccccccccccc---ccccccccc-ccc
Confidence 23467799998753 33332 223344444443 244554 667889999999999988 777777765 689
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-------ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-------HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-------~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
|++++|+|++ +|++|+.|+.|++||+++++....+. +| ...|++++|+| ++++|++++.|++|+|||+++
T Consensus 192 i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~t 269 (311)
T d1nr0a1 192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH-SGSVFGLTWSP-DGTKIASASADKTIKIWNVAT 269 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS-SSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred ccccccCccccccccccccccccccccccccccccccccccccccc-cccccccccCC-CCCEEEEEeCCCeEEEEECCC
Confidence 9999999999 99999999999999999887766543 67 88999999999 999999999999999999999
Q ss_pred CceeEEEEcCCCee-e-eeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 316 SSKVFAFRGDSNWL-G-FSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 316 ~~~~~~~~g~~~~~-~-~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+++++.+..|.... . +....+++.|++++.||.|++||.+
T Consensus 270 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 270 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 99999998765221 1 1123367889999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.7e-32 Score=247.24 Aligned_cols=243 Identities=14% Similarity=0.097 Sum_probs=192.4
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
...+|.+.|.+++|+|++ ..|++++.+|.|++||+...... ....+..+. ..+..++|+| +...+++
T Consensus 92 ~~~~h~~~I~~v~~s~dg----~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~-----~~v~~~~~~~-~~~~l~s 158 (337)
T d1gxra_ 92 DCLNRDNYIRSCKLLPDG----CTLIVGGEASTLSIWDLAAPTPR---IKAELTSSA-----PACYALAISP-DSKVCFS 158 (337)
T ss_dssp ECSCTTSBEEEEEECTTS----SEEEEEESSSEEEEEECCCC--E---EEEEEECSS-----SCEEEEEECT-TSSEEEE
T ss_pred eecCCCCcEEEEEEcCCC----CEEEEeecccccccccccccccc---ccccccccc-----cccccccccc-ccccccc
Confidence 356899999999999984 68899999999999998754211 112222222 2355789999 4557777
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+ +.|+.|++||............+...+..+.+ ++++..+++++.|+.+++||++++ +.+..+.+. ..|++
T Consensus 159 ~-~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~---s~~~~~~~~~~~d~~v~i~d~~~~---~~~~~~~~~--~~i~~ 229 (337)
T d1gxra_ 159 C-CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI---SNDGTKLWTGGLDNTVRSWDLREG---RQLQQHDFT--SQIFS 229 (337)
T ss_dssp E-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---CTTSSEEEEEETTSEEEEEETTTT---EEEEEEECS--SCEEE
T ss_pred c-cccccccccccccccccccccccccccccccc---cccccccccccccccccccccccc---eeecccccc--cceEE
Confidence 7 89999999998643332222334444544443 345678888999999999999988 777777766 89999
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD 325 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~ 325 (369)
++|+|++ .|++|+.|+.|++||+++++.. ....| ...|++++|+| ++++|++++.|+.|++||+.+++.+..+..+
T Consensus 230 l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~-~~~i~~v~~s~-~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 306 (337)
T d1gxra_ 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH-ESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKES 306 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC-SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred EEEcccccccceeccccccccccccccccc-ccccc-ccccceEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEccCC
Confidence 9999999 9999999999999999987765 45678 89999999999 9999999999999999999999998888766
Q ss_pred CCeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 326 SNWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 326 ~~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
.....+..++++++|++|+.||+|+|||+
T Consensus 307 ~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 307 SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 54455556789999999999999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.6e-32 Score=244.28 Aligned_cols=242 Identities=15% Similarity=0.161 Sum_probs=188.3
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|++.|++|+|+|++ .+|++++.+|.|++||+.++. ....+..|. ..+.+++|+|+ ..++++
T Consensus 50 tL~GH~~~I~~l~~s~~~----~~l~sgs~Dg~v~iWd~~~~~-----~~~~~~~~~-----~~v~~v~~~~~-~~~l~~ 114 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDS----RLLVSASQDGKLIIWDSYTTN-----KVHAIPLRS-----SWVMTCAYAPS-GNYVAC 114 (340)
T ss_dssp EECCCSSCEEEEEECTTS----SEEEEEETTTEEEEEETTTTE-----EEEEEECSC-----SCEEEEEECTT-SSEEEE
T ss_pred EECCCCCCEEEEEECCCC----CEEEEEECCCceeeeecccce-----eEEEEeccc-----ccEEeeEeecc-ceeeee
Confidence 367999999999999984 799999999999999987551 122233232 34678999995 557777
Q ss_pred EecccceEEEEeCCc------ceEEEEe---------------------------e------------eCCcceeeeccC
Q 017601 167 ARSFSKSIDVYDQDI------HLRTLRT---------------------------L------------WYPSSLNFVQNL 201 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~------~~~~~~~---------------------------~------------~~~~~v~~~~~~ 201 (369)
+ +.|+.+.+|+... ....+.. . .....+....
T Consensus 115 ~-~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 191 (340)
T d1tbga_ 115 G-GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS-- 191 (340)
T ss_dssp E-ETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEE--
T ss_pred e-cccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeec--
Confidence 7 8999999998531 1111000 0 0000111111
Q ss_pred CCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-
Q 017601 202 SPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV- 279 (369)
Q Consensus 202 ~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~- 279 (369)
..+.+..+++++.|+.|++||++++ +++..+..+ ...|++++|+|++ +|++|+.|++|++||++....+..+.
T Consensus 192 -~~~~~~~~~~~~~d~~v~i~d~~~~---~~~~~~~~h-~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~ 266 (340)
T d1tbga_ 192 -LAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266 (340)
T ss_dssp -ECTTSSEEEEEETTTEEEEEETTTT---EEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred -cccccceeEEeecCceEEEEECCCC---cEEEEEeCC-CCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc
Confidence 1234567788889999999999988 788888876 6899999999999 99999999999999999988776553
Q ss_pred -ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 280 -HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 280 -~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
.| ...|++++|+| ++++|++++.|+.|++||+.+++++..+.+|... ..+..++++.+|++||.||+|+|||
T Consensus 267 ~~~-~~~i~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 267 DNI-ICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTC-CSCEEEEEECS-SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccc-cCceEEEEECC-CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 45 67899999999 9999999999999999999999999999999832 2344467999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.4e-31 Score=238.09 Aligned_cols=254 Identities=13% Similarity=0.126 Sum_probs=193.2
Q ss_pred ccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC--Ccccccc-----ccCC---------------
Q 017601 85 MLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD--VDRLTYS-----VLPQ--------------- 142 (369)
Q Consensus 85 ~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~--~~~~~~~-----~~~~--------------- 142 (369)
+..+.+|++.|++|+|+|++ .+|++++.||.|++||+.++... +..+... ..+.
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~----~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~ 85 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVF----SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 85 (317)
T ss_dssp SCEEECCSSCEEEEEECSSS----SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred cEEEcCCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccc
Confidence 34577999999999999984 68999999999999998754210 0000000 0000
Q ss_pred ----C------CCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEE
Q 017601 143 ----D------CGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLA 212 (369)
Q Consensus 143 ----~------~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla 212 (369)
. ..........+.|+|++ ..++++ +.|+.+++||............+...+..+.+ ++++..|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ 160 (317)
T d1vyhc1 86 WDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSA-SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP---NQDGTLIAS 160 (317)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEE-ETTSEEEEEETTTCCEEEEEECCSSCEEEEEE---CTTSSEEEE
T ss_pred ccccccccccccccccccceeeeccCCC-ceEEee-ccCcceeEeecccceeeeEEccCCCcceeeec---ccCCCEEEE
Confidence 0 00012235578888854 466777 89999999998643222222223344444442 345678888
Q ss_pred EEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC---------------------cEEEEeCCCcEEEEeCCC
Q 017601 213 VTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG---------------------NIAVAGADRTVTIYDPRR 271 (369)
Q Consensus 213 ~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g---------------------~lasgs~D~~v~vwD~~~ 271 (369)
++.|+.|++||++++ ..+..+..+ ...+.+++|+|++ .+++|+.|+.|++||+++
T Consensus 161 ~~~d~~v~~~~~~~~---~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 236 (317)
T d1vyhc1 161 CSNDQTVRVWVVATK---ECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236 (317)
T ss_dssp EETTSCEEEEETTTC---CEEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred EeCCCeEEEEeeccc---eeeEEEecC-CCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC
Confidence 999999999999988 777777765 6889999998864 388999999999999999
Q ss_pred ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEE
Q 017601 272 WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIF 350 (369)
Q Consensus 272 ~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~ 350 (369)
++++.++.+| ...|++++|+| ++++|++++.|+.|++||+++++++..+.+|... ..+..++++++|++|+.||+|+
T Consensus 237 ~~~~~~~~~~-~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~ 314 (317)
T d1vyhc1 237 GMCLMTLVGH-DNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 314 (317)
T ss_dssp TEEEEEEECC-SSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CcEEEEEeCC-CCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Confidence 9999999999 99999999999 9999999999999999999999999999999732 2334467999999999999999
Q ss_pred EEE
Q 017601 351 VAD 353 (369)
Q Consensus 351 iWd 353 (369)
|||
T Consensus 315 iWd 317 (317)
T d1vyhc1 315 VWE 317 (317)
T ss_dssp EEC
T ss_pred EeC
Confidence 997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-30 Score=239.57 Aligned_cols=253 Identities=12% Similarity=0.092 Sum_probs=192.2
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 163 (369)
..+....|...|.+++|+|++ ..|++++ +|.|++||+................ .+..+.+++|+|+ +..
T Consensus 43 ~~~~~~~H~~~V~~v~fs~~g----~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~-----h~~~I~~v~~s~d-g~~ 111 (337)
T d1gxra_ 43 RQINTLNHGEVVCAVTISNPT----RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLN-----RDNYIRSCKLLPD-GCT 111 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSS----SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSC-----TTSBEEEEEECTT-SSE
T ss_pred eEEEECCCCCcEEEEEECCCC----CEEEEEE-CCEEEEEEccCCcccceeEEeeecC-----CCCcEEEEEEcCC-CCE
Confidence 334455899999999999984 6888887 7899999998653211111111111 2335779999995 457
Q ss_pred EEEEecccceEEEEeCCcce-EEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC
Q 017601 164 AAVARSFSKSIDVYDQDIHL-RTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~~~-~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~ 241 (369)
|+++ +.|++|++||..... +... ...+...+..+.+ ++++..+++++.|+.|++||++++ ++......+ .
T Consensus 112 l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~s~~~d~~i~~~~~~~~---~~~~~~~~~-~ 183 (337)
T d1gxra_ 112 LIVG-GEASTLSIWDLAAPTPRIKAELTSSAPACYALAI---SPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGH-T 183 (337)
T ss_dssp EEEE-ESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTTT---EEEEEECCC-S
T ss_pred EEEe-eccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccc---ccccccccc-c
Confidence 7887 899999999975322 1111 2223334444432 355678888999999999999987 666666655 5
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeE
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVF 320 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~ 320 (369)
..|++++|++++ .+++|+.|++|++||+++++.+..+. | ...|++++|+| ++++|++++.|+.+++||++.++...
T Consensus 184 ~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~-~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~ 260 (337)
T d1gxra_ 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-F-TSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C-SSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred cccccccccccccccccccccccccccccccceeecccc-c-ccceEEEEEcc-cccccceecccccccccccccccccc
Confidence 889999999999 99999999999999999999887764 6 78999999999 99999999999999999999887654
Q ss_pred EEEcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 321 AFRGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 321 ~~~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
..+|. ....+...+++++|++|+.||.|++||+.+++.
T Consensus 261 -~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~ 299 (337)
T d1gxra_ 261 -LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp -ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred -ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCE
Confidence 44555 223444477999999999999999999998864
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=6.1e-30 Score=237.73 Aligned_cols=243 Identities=13% Similarity=0.156 Sum_probs=180.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
...|...|++|+|+|++ ..|++++.+|.|++|+..... .......|. ..+.+++|++. ...++++
T Consensus 117 ~~~~~~~V~~l~~s~~~----~~l~s~~~dg~v~i~~~~~~~-----~~~~~~~h~-----~~v~~~~~~~~-~~~~~~~ 181 (388)
T d1erja_ 117 SPSSDLYIRSVCFSPDG----KFLATGAEDRLIRIWDIENRK-----IVMILQGHE-----QDIYSLDYFPS-GDKLVSG 181 (388)
T ss_dssp --CCCCBEEEEEECTTS----SEEEEEETTSCEEEEETTTTE-----EEEEECCCS-----SCEEEEEECTT-SSEEEEE
T ss_pred ccCCCCCEEEEEECCCC----Ccceecccccccccccccccc-----ccccccccc-----ccccccccccc-ccccccc
Confidence 45788999999999984 789999999999999987541 112222222 23668999994 4566666
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee-------ccC
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC-------GSV 240 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~-------~~~ 240 (369)
+.++.|++||............+.... .+...+ +++..|++++.|+.|++||++++ ..+..+. .+
T Consensus 182 -~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~~~~h- 253 (388)
T d1erja_ 182 -SGDRTVRIWDLRTGQCSLTLSIEDGVT-TVAVSP--GDGKYIAAGSLDRAVRVWDSETG---FLVERLDSENESGTGH- 253 (388)
T ss_dssp -ETTSEEEEEETTTTEEEEEEECSSCEE-EEEECS--TTCCEEEEEETTSCEEEEETTTC---CEEEEEC------CCC-
T ss_pred -ccceeeeeeeccccccccccccccccc-cccccC--CCCCeEEEEcCCCeEEEeecccC---ccceeeccccccccCC-
Confidence 789999999987544333222222222 222211 35567888899999999999987 4544432 22
Q ss_pred CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCcee------------eeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 241 GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSA------------LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~------------~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
...|++++|+|++ +|++|+.|+.|++||++++.. ......| ...|++++|+| ++++|++++.|++
T Consensus 254 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~-~~~~l~sg~~dg~ 331 (388)
T d1erja_ 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQ-NDEYILSGSKDRG 331 (388)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECG-GGCEEEEEETTSE
T ss_pred CCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccc-cceEEEEEECC-CCCEEEEEeCCCE
Confidence 4789999999999 999999999999999986433 3345567 88999999999 9999999999999
Q ss_pred EEEEECcCCceeEEEEcCCCee-eeeE------cCCCCEEEEEeCCCcEEEEECC
Q 017601 308 VFCGQWRESSKVFAFRGDSNWL-GFSK------CSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~~~~-~~~~------~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
|++||+++++++..+.+|.... .+.. .+++.+|+||+.||+|+||+++
T Consensus 332 i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999999999999999998322 2221 3488999999999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=2.8e-30 Score=236.28 Aligned_cols=252 Identities=16% Similarity=0.123 Sum_probs=180.1
Q ss_pred cCCc-cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 88 RCPH-RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 88 ~~~H-~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
..+| ...|++++|+|+. +..++++++.+|+|++||+..... .......... ......+.+.+++|+|++..++++
T Consensus 58 ~~gh~~~~v~~v~fsP~~--~g~~lasgs~Dg~i~iWd~~~~~~-~~~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~~~ 133 (325)
T d1pgua1 58 FTGHGSSVVTTVKFSPIK--GSQYLCSGDESGKVIVWGWTFDKE-SNSVEVNVKS-EFQVLAGPISDISWDFEGRRLCVV 133 (325)
T ss_dssp ECTTTTSCEEEEEECSST--TCCEEEEEETTSEEEEEEEEEEGG-GTEEEEEEEE-EEECCSSCEEEEEECTTSSEEEEE
T ss_pred EeCCCCCCEEEEEEeeCC--CCCEEEEEeCCCCEEEeeecCCcc-eeeeeccccc-ccccccCcEEEEEECCCCCcccee
Confidence 4566 4689999999863 247899999999999999875421 1000000000 001123457789999976655555
Q ss_pred EecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCC-cEEEEEcCCeEEEEeCCcccCCceeeeee---ccC
Q 017601 167 ARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDLRMKENGGCLHRIC---GSV 240 (369)
Q Consensus 167 ~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~iwD~~~~~~~~~~~~~~---~~~ 240 (369)
+.+.++.+.+|+.+ +.+..+. .|...+..+.+.+ ++. .+++++.|+.+++||++.. +....+. .+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~---~~~~~~~~~~~d~~v~~~d~~~~---~~~~~~~~~~~~- 204 (325)
T d1pgua1 134 GEGRDNFGVFISWDSGNSLGEVS--GHSQRINACHLKQ---SRPMRSMTVGDDGSVVFYQGPPF---KFSASDRTHHKQ- 204 (325)
T ss_dssp ECCSSCSEEEEETTTCCEEEECC--SCSSCEEEEEECS---SSSCEEEEEETTTEEEEEETTTB---EEEEEECSSSCT-
T ss_pred eccccceEEEEeecccccceeee--ecccccccccccc---cccceEEEeeccccccccccccc---ccceecccccCC-
Confidence 54567888999865 3333332 2444454444333 344 4667889999999999876 4433332 22
Q ss_pred CCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEc---CCCCCEEEEEECCCeEEEEECcC
Q 017601 241 GDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFS---SIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 241 ~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~s---p~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
...|++++|+|++ +|++|+.|+.|++||+++++.+.++.+| ...+.++.|+ | ++++|++++.|++|+|||+++
T Consensus 205 ~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~-~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~ 282 (325)
T d1pgua1 205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD-QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT 282 (325)
T ss_dssp TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT-TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred CCccEEeeeccccceeccccccccceeeeeecccccccccccc-ccccccceeeeecc-CCCEEEEEeCCCeEEEEECCC
Confidence 5779999999985 8999999999999999999999999999 8877766666 6 889999999999999999999
Q ss_pred CceeEEEEcCCCeee---eeEcC-CCCEEEEEeCCCcEEEEEC
Q 017601 316 SSKVFAFRGDSNWLG---FSKCS-NRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 316 ~~~~~~~~g~~~~~~---~~~~~-d~~~l~sgs~dg~I~iWd~ 354 (369)
++++..+..|..-.. +.... .+.+|++||.||+|++||+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 283 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 999999877652111 11122 4568999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=5.3e-30 Score=233.31 Aligned_cols=249 Identities=11% Similarity=0.078 Sum_probs=189.5
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.+++.+..++++|++ ..++.+. ...+.+|++..... ...+..|. ..+++++|+|+ +.++|++ +
T Consensus 15 ~~r~~~~~~a~~~~g----~~l~~~~-~~~v~i~~~~~~~~-----~~~~~~H~-----~~v~~~~~sp~-g~~latg-~ 77 (311)
T d1nr0a1 15 TARGTAVVLGNTPAG----DKIQYCN-GTSVYTVPVGSLTD-----TEIYTEHS-----HQTTVAKTSPS-GYYCASG-D 77 (311)
T ss_dssp CCTTCCCCCEECTTS----SEEEEEE-TTEEEEEETTCSSC-----CEEECCCS-----SCEEEEEECTT-SSEEEEE-E
T ss_pred CCCCCeEEEEEcCCC----CEEEEEe-CCEEEEEECCCCce-----eEEEcCCC-----CCEEEEEEeCC-CCeEecc-c
Confidence 355677788999984 4555554 45699999875411 11223332 34779999995 5678888 8
Q ss_pred ccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc--CCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 170 FSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE--GCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 170 ~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~--d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
.|++|+|||.... ........+...+..+.+ ++++..++++++ +..++|||++++ +.+..+..+ ...|+
T Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~---s~d~~~l~~~~~~~~~~~~v~~~~~~---~~~~~l~~h-~~~v~ 150 (311)
T d1nr0a1 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW---DSESKRIAAVGEGRERFGHVFLFDTG---TSNGNLTGQ-ARAMN 150 (311)
T ss_dssp TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEE---CTTSCEEEEEECCSSCSEEEEETTTC---CBCBCCCCC-SSCEE
T ss_pred cCceEeeeeeeccccccccccccccCccccccc---cccccccccccccccccccccccccc---ccccccccc-ccccc
Confidence 9999999998532 222222234445555543 356777888875 466999999988 677777766 68899
Q ss_pred EEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 246 AVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 246 ~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
+++|+|++ .|++|+.|++|++||+++++....+.+| ..+|+++.|+| ++++|++++.|+.|++||++++.....+.
T Consensus 151 ~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~-~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~ 228 (311)
T d1nr0a1 151 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH-TKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFE 228 (311)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC-SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred cccccccceeeecccccccccccccccccccccccccc-cccccccccCc-ccccccccccccccccccccccccccccc
Confidence 99999999 5889999999999999999999999999 99999999999 99999999999999999999988777764
Q ss_pred -------cCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcc
Q 017601 324 -------GDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALK 365 (369)
Q Consensus 324 -------g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~ 365 (369)
+|..+ ..+..++++++|++|+.||.|+|||+++++. +..++
T Consensus 229 ~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~-~~~l~ 277 (311)
T d1nr0a1 229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIP 277 (311)
T ss_dssp CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE
T ss_pred ccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcE-EEEEE
Confidence 34422 2344467999999999999999999998863 34444
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.6e-29 Score=232.48 Aligned_cols=263 Identities=16% Similarity=0.203 Sum_probs=187.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC--Ccccc------ccccCCCCCCCCCCeeEEEECCC
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD--VDRLT------YSVLPQDCGVGEGSWSGLCFSPS 159 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~l~~~p~ 159 (369)
..+|++.|++|+|+||+ .+||+++ ++.|++|++.++... +.... ..............+.+++|+|+
T Consensus 58 ~~~H~~~V~~l~fs~dg----~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 132 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDG----EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 132 (388)
T ss_dssp EEECSSCCCEEEECTTS----SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred eCCCCCcEEEEEECCCC----CEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC
Confidence 45799999999999984 6788876 789999998765210 00000 00000111122345778999994
Q ss_pred CceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc
Q 017601 160 QWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS 239 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~ 239 (369)
+.+++++ +.|+.|++||............+...+..+.+. +++..+++++.++.+++||.++. ........+
T Consensus 133 -~~~l~s~-~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~ 204 (388)
T d1erja_ 133 -GKFLATG-AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF---PSGDKLVSGSGDRTVRIWDLRTG---QCSLTLSIE 204 (388)
T ss_dssp -SSEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTT---EEEEEEECS
T ss_pred -CCcceec-ccccccccccccccccccccccccccccccccc---cccccccccccceeeeeeecccc---ccccccccc
Confidence 5678888 899999999986543333333344455544432 34668888999999999999987 666666665
Q ss_pred CCCcEEEEEECC-CC-cEEEEeCCCcEEEEeCCCceeeeec-------cccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 240 VGDILYAVCSSS-TG-NIAVAGADRTVTIYDPRRWSALSRW-------VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 240 ~~~~v~~v~~sp-~g-~lasgs~D~~v~vwD~~~~~~~~~~-------~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
....++.|++ ++ +|++|+.|+.|++||.+++.....+ .+| ...|++++|+| ++++|++++.|+.|++
T Consensus 205 --~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~-~~~~l~s~~~d~~i~i 280 (388)
T d1erja_ 205 --DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTR-DGQSVVSGSLDRSVKL 280 (388)
T ss_dssp --SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred --cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCC-CCCEEEEEECC-CCCEEEEEECCCcEEE
Confidence 5556666655 66 9999999999999999987766554 367 88999999999 9999999999999999
Q ss_pred EECcCC------------ceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 311 GQWRES------------SKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 311 wd~~~~------------~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
||++++ .+...+..|... ..+...+++++|++|+.||.|++||+++++. +..++||.
T Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-~~~l~~H~ 350 (388)
T d1erja_ 281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP-LLMLQGHR 350 (388)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE-EEEEECCS
T ss_pred EeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE-EEEEeCCC
Confidence 999763 233444555522 2333456899999999999999999998864 55666664
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=4.3e-29 Score=232.38 Aligned_cols=257 Identities=17% Similarity=0.123 Sum_probs=178.9
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|++|+|+|++ .+|++++.+++|++|++..... .....+..+ ...+.+++|+|+ +..++++
T Consensus 47 l~gH~~~V~~l~fsp~~----~~l~s~s~D~~i~vWd~~~~~~---~~~~~~~~~-----~~~v~~i~~~p~-~~~l~~~ 113 (371)
T d1k8kc_ 47 LKEHNGQVTGVDWAPDS----NRIVTCGTDRNAYVWTLKGRTW---KPTLVILRI-----NRAARCVRWAPN-EKKFAVG 113 (371)
T ss_dssp EECCSSCEEEEEEETTT----TEEEEEETTSCEEEEEEETTEE---EEEEECCCC-----SSCEEEEEECTT-SSEEEEE
T ss_pred ecCCCCCEEEEEECCCC----CEEEEEECCCeEEEEeeccccc---ccccccccc-----cccccccccccc-cccceee
Confidence 46899999999999984 6899999999999999975411 011112222 234678999995 5577877
Q ss_pred ecccceEEEEeCC--cceEEEEee--eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC--------------
Q 017601 168 RSFSKSIDVYDQD--IHLRTLRTL--WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN-------------- 229 (369)
Q Consensus 168 ~s~d~~i~lwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~-------------- 229 (369)
+.|++|++|+.. ......... .+...+..+.+ +|++..|++++.|++|++||+.....
T Consensus 114 -s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~---~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~ 189 (371)
T d1k8kc_ 114 -SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW---HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189 (371)
T ss_dssp -ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE---CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred -cccCcceeeeeecccccccccccccccccccccccc---cccccceeccccCcEEEEEeeccCcccccccccccccccc
Confidence 899999999754 222222221 23344444543 35677888899999999999865321
Q ss_pred -CceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 230 -GGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 230 -~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
...+.....+ ...|++++|+|+| +|++++.|++|++||+++++.+..+..| ..+|++++|+| ++++|++| .|+.
T Consensus 190 ~~~~~~~~~~~-~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~s~~fs~-d~~~la~g-~d~~ 265 (371)
T d1k8kc_ 190 FGELMFESSSS-CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFIT-ESSLVAAG-HDCF 265 (371)
T ss_dssp TTCEEEECCCC-SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEE-TTEEEEEE-TTSS
T ss_pred ceeeeeeccCc-cCcEEEEEeecccccccccccCCcceEEeeecccceeeeecc-cccceeeeecC-CCCEEEEE-cCCc
Confidence 1223333344 5789999999999 9999999999999999999999999999 99999999999 98877765 5777
Q ss_pred EEEEECcCCceeEEEE-----------------------------------------cCCCe-eeeeEcC----CCCEEE
Q 017601 308 VFCGQWRESSKVFAFR-----------------------------------------GDSNW-LGFSKCS----NRDVLG 341 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~-----------------------------------------g~~~~-~~~~~~~----d~~~l~ 341 (369)
+++|++........+. .|.+. ..+...+ ....|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~ 345 (371)
T d1k8kc_ 266 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 345 (371)
T ss_dssp CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred eEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEE
Confidence 7776654321111110 13311 1122222 224699
Q ss_pred EEeCCCcEEEEECCCCcchhhhcc
Q 017601 342 GWSDSGSIFVADVVAKENEISALK 365 (369)
Q Consensus 342 sgs~dg~I~iWd~~~~~~~~~~l~ 365 (369)
|++.||.|++||+++.+..+..|+
T Consensus 346 T~g~Dg~v~iW~~~~~~~~~~~l~ 369 (371)
T d1k8kc_ 346 TTGMDGGMSIWDVRSLESALKDLK 369 (371)
T ss_dssp EEETTSEEEEEEHHHHHHHCTTCC
T ss_pred EEcCCCeEEEEeCCcChhhhcCEe
Confidence 999999999999988766555443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=4.5e-28 Score=217.48 Aligned_cols=258 Identities=16% Similarity=0.114 Sum_probs=175.4
Q ss_pred CCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCC
Q 017601 69 KDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGE 148 (369)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (369)
.++.++.++.+...........|.+.|++++|+|++ . +++++.++.+++|+...... .........+ .
T Consensus 32 ~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g----~-~~~~~~d~~v~~~~~~~~~~--~~~~~~~~~~-----~ 99 (299)
T d1nr0a2 32 AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG----D-LFTVSWDDHLKVVPAGGSGV--DSSKAVANKL-----S 99 (299)
T ss_dssp TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS----C-EEEEETTTEEEEECSSSSSS--CTTSCCEEEC-----S
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc----e-eecccceeeEEEeccCCccc--cccccccccc-----c
Confidence 344443334333332222235799999999999974 3 45556788999999864321 1100000111 1
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
....+++|+|++ ..++++ .++.+++|+..+..... .......+.+ ++++..+++++.|+.|++||++++
T Consensus 100 ~~~~~~~~s~~g-~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~~~~~~------s~~~~~l~~g~~dg~i~~~d~~~~- 168 (299)
T d1nr0a2 100 SQPLGLAVSADG-DIAVAA--CYKHIAIYSHGKLTEVP-ISYNSSCVAL------SNDKQFVAVGGQDSKVHVYKLSGA- 168 (299)
T ss_dssp SCEEEEEECTTS-SCEEEE--ESSEEEEEETTEEEEEE-CSSCEEEEEE------CTTSCEEEEEETTSEEEEEEEETT-
T ss_pred cccccccccccc-cccccc--ccccccccccccccccc-cccccccccc------cccccccccccccccccccccccc-
Confidence 224579999954 344443 56789999976543322 1111222222 245678888899999999999876
Q ss_pred CCcee--eeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceee---eeccccccCceEEEEEcCCCCCEEEEE
Q 017601 229 NGGCL--HRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL---SRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 229 ~~~~~--~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~---~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
... ....+. ..|++++|+|++ +|++++.|+.|++||++++... ..+.+| ...|++++|+| ++.+|+++
T Consensus 169 --~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~-~~~~l~sg 242 (299)
T d1nr0a2 169 --SVSEVKTIVHP--AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAKVACVSWSP-DNVRLATG 242 (299)
T ss_dssp --EEEEEEEEECS--SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-SSCEEEEEECT-TSSEEEEE
T ss_pred --ccccccccccc--cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccceEEE
Confidence 332 333444 899999999999 9999999999999999886554 456788 89999999999 99999999
Q ss_pred ECCCeEEEEECcCCceeEEE--EcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 303 GVDYEVFCGQWRESSKVFAF--RGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~~~--~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+.|+.|++||++++.....+ .+|. ........+++.+|++|+.|++|++||+.
T Consensus 243 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred cCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence 99999999999886544333 2332 11222223478899999999999999973
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=8.8e-29 Score=230.21 Aligned_cols=243 Identities=8% Similarity=0.011 Sum_probs=180.3
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
.+|++++|+|++ ..+|+++.+|.|++|+...+.. .....+..|. +.+.+++|+|+ ..+|+++ +.|+
T Consensus 8 ~pIt~~~~s~dg----~~la~~~~~~~i~iw~~~~~~~---~~~~~l~gH~-----~~V~~l~fsp~-~~~l~s~-s~D~ 73 (371)
T d1k8kc_ 8 EPISCHAWNKDR----TQIAICPNNHEVHIYEKSGNKW---VQVHELKEHN-----GQVTGVDWAPD-SNRIVTC-GTDR 73 (371)
T ss_dssp SCCCEEEECTTS----SEEEEECSSSEEEEEEEETTEE---EEEEEEECCS-----SCEEEEEEETT-TTEEEEE-ETTS
T ss_pred CCeEEEEECCCC----CEEEEEeCCCEEEEEECCCCCE---EEEEEecCCC-----CCEEEEEECCC-CCEEEEE-ECCC
Confidence 679999999984 6889999999999999975411 1122233443 34679999995 5678888 8999
Q ss_pred eEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee-eeccCCCcEEEEEE
Q 017601 173 SIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR-ICGSVGDILYAVCS 249 (369)
Q Consensus 173 ~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~-~~~~~~~~v~~v~~ 249 (369)
+|+|||.... ...+....+...+..+.+ +|++..|++++.|+++++|++........... ...+ ...|++++|
T Consensus 74 ~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~---~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~v~~v~~ 149 (371)
T d1k8kc_ 74 NAYVWTLKGRTWKPTLVILRINRAARCVRW---APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI-RSTVLSLDW 149 (371)
T ss_dssp CEEEEEEETTEEEEEEECCCCSSCEEEEEE---CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC-CSCEEEEEE
T ss_pred eEEEEeeccccccccccccccccccccccc---ccccccceeecccCcceeeeeeccccccccccccccc-ccccccccc
Confidence 9999997532 222222334445555553 35677899999999999999876532122222 2223 578999999
Q ss_pred CCCC-cEEEEeCCCcEEEEeCCCc------------------eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 250 SSTG-NIAVAGADRTVTIYDPRRW------------------SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 250 sp~g-~lasgs~D~~v~vwD~~~~------------------~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
+|++ +|++|+.|++|++||+... +.+....+| ...|.+++|+| ++++|++++.|++|++
T Consensus 150 ~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~-~g~~l~s~~~d~~i~i 227 (371)
T d1k8kc_ 150 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-CGWVHGVCFSA-NGSRVAWVSHDSTVCL 227 (371)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-SSCEEEEEECS-SSSEEEEEETTTEEEE
T ss_pred cccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCc-cCcEEEEEeec-ccccccccccCCcceE
Confidence 9999 9999999999999997642 345566788 88999999999 9999999999999999
Q ss_pred EECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 311 GQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 311 wd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
||+++++.+..+.+|... ..+...+|+.+|++|+ |+.+++|....
T Consensus 228 wd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~ 273 (371)
T d1k8kc_ 228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDS 273 (371)
T ss_dssp EEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEET
T ss_pred EeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeC
Confidence 999999999999988732 2344466888888765 67666665443
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.4e-28 Score=229.03 Aligned_cols=269 Identities=17% Similarity=0.148 Sum_probs=176.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccc-ccccCCCCCCCCC-CeeEEEECCCCceeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLT-YSVLPQDCGVGEG-SWSGLCFSPSQWSMAA 165 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~p~~~~~~a 165 (369)
..+|.++|.+|+++++ .+++++.|+.|++||........+... .....+..+.... .+..+..+..+..+++
T Consensus 10 ~~~H~~~I~~v~~~~~------~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (393)
T d1sq9a_ 10 GKAHDADIFSVSACNS------FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83 (393)
T ss_dssp SSCSSSCEEEEEECSS------EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred CCcccCccEEEEEeCC------EEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence 4589999999998753 788889999999999775432211100 0111111111000 1122333332334556
Q ss_pred EEecccceEEEEeCC---c--ceEE--EEeee---CCcc---eeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC--
Q 017601 166 VARSFSKSIDVYDQD---I--HLRT--LRTLW---YPSS---LNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG-- 230 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~---~--~~~~--~~~~~---~~~~---v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~-- 230 (369)
++ +.|++|++|+.. . .... ..... ++.. +.+... .....+..+++++.|+++++||+......
T Consensus 84 s~-~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~ 161 (393)
T d1sq9a_ 84 TT-SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS-NDRLLSHRLVATDVKGTTYIWKFHPFADESN 161 (393)
T ss_dssp EE-ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC-C----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EE-eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecC-CCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence 66 899999999752 1 1111 00000 1111 122211 11122456788899999999998532100
Q ss_pred -------ce--e-eee---eccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeee------ccccccCceEEEEE
Q 017601 231 -------GC--L-HRI---CGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSR------WVHCSKYEITGLSF 291 (369)
Q Consensus 231 -------~~--~-~~~---~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~------~~~h~~~~v~~l~~ 291 (369)
.. + ... ..+ ...+++++|+|+++||+|+.|++|+|||+++++++.. +.+| ...|++|+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h-~~~V~~l~~ 239 (393)
T d1sq9a_ 162 SLTLNWSPTLELQGTVESPMTP-SQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINN-SNSIRSVKF 239 (393)
T ss_dssp HTTTCCCCEEEEEEEECCSSSS-CCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CC-CCCEEEEEE
T ss_pred eeeeeeccceecccceecccCC-CCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccc-cceEEEccc
Confidence 00 0 011 111 3568999999999999999999999999999877654 4578 899999999
Q ss_pred cCCCCCEEEEEECCCe---EEEEECcCCceeEEEE-------------cCCCee-eeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 292 SSIDSNYIYVQGVDYE---VFCGQWRESSKVFAFR-------------GDSNWL-GFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 292 sp~d~~~l~s~s~D~~---i~vwd~~~~~~~~~~~-------------g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
+| |+++|+++|.|++ |++||+++++++..+. ||..+. .+...+|+++|+|||.|++|++||+
T Consensus 240 sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~ 318 (393)
T d1sq9a_ 240 SP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318 (393)
T ss_dssp CS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence 99 9999999999974 9999999988887774 677442 3444679999999999999999999
Q ss_pred CCCcchhhhcccCC
Q 017601 355 VAKENEISALKGLV 368 (369)
Q Consensus 355 ~~~~~~~~~l~g~~ 368 (369)
++++ .+.+++||.
T Consensus 319 ~~g~-~~~~l~gH~ 331 (393)
T d1sq9a_ 319 KTKE-RITTLNMHC 331 (393)
T ss_dssp TTTE-EEEEEECCG
T ss_pred CCCC-EEEEECCcC
Confidence 9986 567788875
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.8e-27 Score=214.06 Aligned_cols=252 Identities=13% Similarity=0.099 Sum_probs=179.3
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+.+|.+.|++|+|+|+ ..+++++.+|.+++|+...... ........ .........+++ +...++
T Consensus 47 ~~l~~H~~~V~~l~~s~~-----~~l~s~s~D~~i~iw~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~-~~~~~~ 112 (355)
T d1nexb2 47 LQLSGHDGGVWALKYAHG-----GILVSGSTDRTVRVWDIKKGCC-----THVFEGHN---STVRCLDIVEYK-NIKYIV 112 (355)
T ss_dssp EEEECCSSCEEEEEEETT-----TEEEEEETTCCEEEEETTTTEE-----EEEECCCS---SCEEEEEEEEET-TEEEEE
T ss_pred EEEECCCCCEEEEEEcCC-----CEEEEEeccccccccccccccc-----cccccccc---cccccccccccc-ccceee
Confidence 345689999999999986 3788999999999999875411 11111000 001122355666 556777
Q ss_pred EEecccceEEEEeCCcceEEEE--e---------------------eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEE
Q 017601 166 VARSFSKSIDVYDQDIHLRTLR--T---------------------LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIW 222 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~--~---------------------~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iw 222 (369)
++ +.|++|++||......... . ..+...+.... +++..++.+..|+.+++|
T Consensus 113 ~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~~~d~~i~~~ 186 (355)
T d1nexb2 113 TG-SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-----GHGNIVVSGSYDNTLIVW 186 (355)
T ss_dssp EE-ETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEE-----EETTEEEEEETTSCEEEE
T ss_pred ee-cCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccc-----cccceeeeecccceeeee
Confidence 77 8999999999753211100 0 00111111111 245677788899999999
Q ss_pred eCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEE
Q 017601 223 DLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 223 D~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s 301 (369)
|++++ +.+.....+ ...+.++.|+|++ .+++++.|++|++||++++..+..+.+| ...|++++|++ ++|++
T Consensus 187 d~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h-~~~v~~~~~~~---~~l~~ 258 (355)
T d1nexb2 187 DVAQM---KCLYILSGH-TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLSD---KFLVS 258 (355)
T ss_dssp ETTTT---EEEEEECCC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCC-SSCCCEEEECS---SEEEE
T ss_pred ecccc---cceeeeecc-ccccccccccccceeeecccccceEEeeeccccccccccccc-ccccccccccc---ceeee
Confidence 99988 677776655 5889999999999 9999999999999999999999999999 99999999987 79999
Q ss_pred EECCCeEEEEECcCCceeEEEEcCCCeeeeeE-cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 302 QGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK-CSNRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 302 ~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~-~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
++.|++|++||+++......+.... ...+.. .+++.+|++|+ ||.|++||+++++.....+.+|
T Consensus 259 ~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~ 323 (355)
T d1nexb2 259 AAADGSIRGWDANDYSRKFSYHHTN-LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKD 323 (355)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECTT-CCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTT
T ss_pred eecccccccccccccceecccccCC-ceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCC
Confidence 9999999999999876554442221 122222 33777777765 8999999999987543445554
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=5e-27 Score=210.61 Aligned_cols=241 Identities=14% Similarity=0.063 Sum_probs=174.9
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccc-cCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSV-LPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
+.+|.+.|++|+|+|++ ..|++++.+|.|++||+.++.. ...+ ..| ...+.+++|+|++ . +++
T Consensus 8 ~~GH~~~V~~l~~s~dg----~~l~s~s~Dg~v~vWd~~~~~~-----~~~~~~~h-----~~~v~~v~~~~~g-~-~~~ 71 (299)
T d1nr0a2 8 RYGHNKAITALSSSADG----KTLFSADAEGHINSWDISTGIS-----NRVFPDVH-----ATMITGIKTTSKG-D-LFT 71 (299)
T ss_dssp ECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCCE-----EECSSCSC-----SSCEEEEEECTTS-C-EEE
T ss_pred cCCCCCCcEEEEECCCC----CEEEEEcCCCeEEEEECCCCcE-----EEEEcCCC-----CCcEEEEEeeccc-e-eec
Confidence 67999999999999984 6899999999999999975421 1111 112 2346789999954 3 445
Q ss_pred EecccceEEEEeCCcce-EE--EEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 167 ARSFSKSIDVYDQDIHL-RT--LRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~-~~--~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
+ +.|+.+++|+..... .. .....+...+..+.. +++ +.+++++.++.+++|+.... ...... ..
T Consensus 72 ~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~-g~~~~~~~~~~i~~~~~~~~------~~~~~~--~~ 138 (299)
T d1nr0a2 72 V-SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV---SAD-GDIAVAACYKHIAIYSHGKL------TEVPIS--YN 138 (299)
T ss_dssp E-ETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE---CTT-SSCEEEEESSEEEEEETTEE------EEEECS--SC
T ss_pred c-cceeeEEEeccCCcccccccccccccccccccccc---ccc-cccccccccccccccccccc------cccccc--cc
Confidence 5 579999999864211 10 011112222222222 233 45666677789999996432 223333 67
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee-eccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCcee--
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS-RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKV-- 319 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~-- 319 (369)
+.+++|+|++ +|++|+.|+.|++||+++++... ....| ...|++++|+| ++++|++++.|+.|++||+.++...
T Consensus 139 ~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~ 216 (299)
T d1nr0a2 139 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH-PAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAH 216 (299)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEEC-SSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccccccccccc
Confidence 8899999999 99999999999999998876654 44578 89999999999 9999999999999999999876543
Q ss_pred -EEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 320 -FAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 320 -~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
..+.+|... ..+..++++.+|++|+.||.|++||++++..
T Consensus 217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~ 258 (299)
T d1nr0a2 217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 258 (299)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred cccccccccccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence 344566632 2344477999999999999999999988653
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.8e-26 Score=205.88 Aligned_cols=203 Identities=15% Similarity=0.149 Sum_probs=155.3
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
...|...+.++.|++++ ..+++++.++.+.+|++.+.. ....+..+. ..+..++|+|+ ..+++++
T Consensus 97 ~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~-----~~~~~~~~~~~-~~~l~~~ 161 (317)
T d1vyhc1 97 MHGHDHNVSSVSIMPNG----DHIVSASRDKTIKMWEVQTGY-----CVKTFTGHR-----EWVRMVRPNQD-GTLIASC 161 (317)
T ss_dssp CCCCSSCEEEEEECSSS----SEEEEEETTSEEEEEETTTCC-----EEEEEECCS-----SCEEEEEECTT-SSEEEEE
T ss_pred cccccccceeeeccCCC----ceEEeeccCcceeEeecccce-----eeeEEccCC-----CcceeeecccC-CCEEEEE
Confidence 45788899999998874 678889999999999987552 112222222 23557999994 5577887
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCC-----------------CCCCCCcEEEEEcCCeEEEEeCCcccCC
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLS-----------------PVNGGPNMLAVTEGCQLTIWDLRMKENG 230 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~-----------------~~~~~~~lla~s~d~~v~iwD~~~~~~~ 230 (369)
+.|+.|++|+............+...+..+.+.+ ....+..+++++.|+.|++||++++
T Consensus 162 -~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--- 237 (317)
T d1vyhc1 162 -SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--- 237 (317)
T ss_dssp -ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---
T ss_pred -eCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---
Confidence 8999999999763322211111222222111111 1123456788899999999999988
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
+++..+..+ ...|.+++|+|++ +|++|+.||+|++||+++++++.++.+| ...|++++|+| ++++|+|+|.|++|+
T Consensus 238 ~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~V~~~~~s~-~~~~l~s~s~Dg~i~ 314 (317)
T d1vyhc1 238 MCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-EHFVTSLDFHK-TAPYVVTGSVDQTVK 314 (317)
T ss_dssp EEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-SSCEEEEEECS-SSSCEEEEETTSEEE
T ss_pred cEEEEEeCC-CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEcC-CCCEEEEEeCCCeEE
Confidence 788888876 6899999999999 9999999999999999999999999999 99999999999 999999999999999
Q ss_pred EEE
Q 017601 310 CGQ 312 (369)
Q Consensus 310 vwd 312 (369)
+||
T Consensus 315 iWd 317 (317)
T d1vyhc1 315 VWE 317 (317)
T ss_dssp EEC
T ss_pred EeC
Confidence 997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.5e-25 Score=209.81 Aligned_cols=211 Identities=11% Similarity=0.093 Sum_probs=146.7
Q ss_pred ceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCc----eeEEEEecccceEEEEeCCc--
Q 017601 108 YMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQW----SMAAVARSFSKSIDVYDQDI-- 181 (369)
Q Consensus 108 ~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~----~~~a~~~s~d~~i~lwd~~~-- 181 (369)
..++++++.+|.+.+|++............................++|.+... ..++++ +.|++|++||+..
T Consensus 79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dg~i~vw~~~~~~ 157 (393)
T d1sq9a_ 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT-DVKGTTYIWKFHPFA 157 (393)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE-ETTSCEEEEEEESSS
T ss_pred CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEE-cCCCcEEEEEeecCC
Confidence 467889999999999998755322111111111111111122344577766432 456776 8999999998621
Q ss_pred -----------ceEEEEe-ee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee------ccCCC
Q 017601 182 -----------HLRTLRT-LW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC------GSVGD 242 (369)
Q Consensus 182 -----------~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~------~~~~~ 242 (369)
....+.. .. ....-.++....++++ +.|++++.|++|+|||++++ +++..+. +| ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~lasgs~Dg~i~iwd~~~~---~~~~~~~~~~~l~~h-~~ 232 (393)
T d1sq9a_ 158 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-GLIATGFNNGTVQISELSTL---RPLYNFESQHSMINN-SN 232 (393)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-SEEEEECTTSEEEEEETTTT---EEEEEEECCC---CC-CC
T ss_pred cccceeeeeeccceecccceecccCCCCcEEEEEECCC-CEEEEEeCCCcEEEEeeccc---ccccccccccccccc-cc
Confidence 0011111 11 1111111111123343 48888999999999999987 5554433 33 58
Q ss_pred cEEEEEECCCC-cEEEEeCCCc---EEEEeCCCceeeeecc-------------ccccCceEEEEEcCCCCCEEEEEECC
Q 017601 243 ILYAVCSSSTG-NIAVAGADRT---VTIYDPRRWSALSRWV-------------HCSKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~---v~vwD~~~~~~~~~~~-------------~h~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
+|++++|+|+| +|++|+.|++ |++||+++++.+.++. +| ...|++|+|+| |+++|+|+|.|
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fsp-d~~~l~S~s~D 310 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFND-SGETLCSAGWD 310 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECS-SSSEEEEEETT
T ss_pred eEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecc-cCceeeeccCC-CCCeeEEECCC
Confidence 89999999999 9999999985 8999999988777664 78 99999999999 99999999999
Q ss_pred CeEEEEECcCCceeEEEEcCC
Q 017601 306 YEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g~~ 326 (369)
++|++||+++++++.+++||.
T Consensus 311 ~~v~vWd~~~g~~~~~l~gH~ 331 (393)
T d1sq9a_ 311 GKLRFWDVKTKERITTLNMHC 331 (393)
T ss_dssp SEEEEEETTTTEEEEEEECCG
T ss_pred CEEEEEECCCCCEEEEECCcC
Confidence 999999999999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.9e-26 Score=207.26 Aligned_cols=247 Identities=12% Similarity=0.070 Sum_probs=174.0
Q ss_pred ceeeEEEEeecCCCCceEEEEEecC-CcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCc-eeEEEEecc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSY-GHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQW-SMAAVARSF 170 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~-g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~~a~~~s~ 170 (369)
+.+.+++|+|++ ..++.++.+ ..++.|+..... ... ...+..| ....+++++|+|..+ .++|++ +.
T Consensus 18 ~~~t~l~~~~~~----~~la~~~~~~~~i~~~~~~~~~--~~~-~~~~~gh----~~~~v~~v~fsP~~~g~~lasg-s~ 85 (325)
T d1pgua1 18 NFTTHLSYDPTT----NAIAYPCGKSAFVRCLDDGDSK--VPP-VVQFTGH----GSSVVTTVKFSPIKGSQYLCSG-DE 85 (325)
T ss_dssp TCCCCCEEETTT----TEEEEEETTEEEEEECCSSCCS--SCS-EEEECTT----TTSCEEEEEECSSTTCCEEEEE-ET
T ss_pred CCeEEEEECCCC----CEEEEEeCCCEEEEEEeCCCCC--ccc-eEEEeCC----CCCCEEEEEEeeCCCCCEEEEE-eC
Confidence 446789999984 455555433 334555443221 111 1111222 223477899999644 566776 99
Q ss_pred cceEEEEeCCc--ceEEEE------eeeCCcceeeeccCCCCCCCCcEEEEEc--CCeEEEEeCCcccCCceeeeeeccC
Q 017601 171 SKSIDVYDQDI--HLRTLR------TLWYPSSLNFVQNLSPVNGGPNMLAVTE--GCQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 171 d~~i~lwd~~~--~~~~~~------~~~~~~~v~~~~~~~~~~~~~~lla~s~--d~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
|++|+|||... ....+. ...+...+..+.+ ++++..+++++. ++.+++|+..++ +++..+..|
T Consensus 86 Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~---s~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~h- 158 (325)
T d1pgua1 86 SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW---DFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGH- 158 (325)
T ss_dssp TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE---CTTSSEEEEEECCSSCSEEEEETTTC---CEEEECCSC-
T ss_pred CCCEEEeeecCCcceeeeecccccccccccCcEEEEEE---CCCCCccceeeccccceEEEEeeccc---ccceeeeec-
Confidence 99999998741 111111 1113333444443 345667777664 678999999887 788888866
Q ss_pred CCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeec---cccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 241 GDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRW---VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 241 ~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~---~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
...|++++|+|++ .+++++.|+.|++||.++.+....+ .+| ...|++++|+|..+.+|++++.|+.|++||+++
T Consensus 159 ~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~-~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~ 237 (325)
T d1pgua1 159 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ-GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS 237 (325)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT-TCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred ccccccccccccccceEEEeecccccccccccccccceecccccCC-CCccEEeeeccccceeccccccccceeeeeecc
Confidence 6899999999998 5788999999999999887665544 456 778999999994478999999999999999999
Q ss_pred CceeEEEEcCCCee-eeeE---cCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 316 SSKVFAFRGDSNWL-GFSK---CSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 316 ~~~~~~~~g~~~~~-~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
++++..+.+|.... +... .+|+.+|++++.|+.|+|||+++++.
T Consensus 238 ~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~ 285 (325)
T d1pgua1 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285 (325)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEE
T ss_pred ccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCE
Confidence 99999998887321 1122 25899999999999999999998763
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.8e-25 Score=201.82 Aligned_cols=243 Identities=14% Similarity=0.157 Sum_probs=175.1
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|++.|.+ ++++++ .+|+|++.||.|++||+.++. ....+..|. ..+.+++|+|+ .++++
T Consensus 12 l~GH~~~V~s-~~~~~g----~~l~sgs~Dg~i~vWd~~~~~-----~~~~~~~h~-----~~V~~v~~~~~---~l~s~ 73 (342)
T d2ovrb2 12 LKGHDDHVIT-CLQFCG----NRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHT-----GGVWSSQMRDN---IIISG 73 (342)
T ss_dssp EECSTTSCEE-EEEEET----TEEEEEETTSCEEEEETTTCC-----EEEECCCCS-----SCEEEEEEETT---EEEEE
T ss_pred ECCcCCceEE-EEEECC----CEEEEEeCCCeEEEEECCCCC-----EEEEEeCCC-----CCEEEEEeCCC---ccccc
Confidence 5699999865 355553 589999999999999997651 122333333 34678999872 77777
Q ss_pred ecccceEEEEeCCcceEEEEeeeCC-------------------cceeeecc-----------C-----CCCCCCCcEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYP-------------------SSLNFVQN-----------L-----SPVNGGPNMLA 212 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~-------------------~~v~~~~~-----------~-----~~~~~~~~lla 212 (369)
+.|+++++|+.............. ..+..... . ........++.
T Consensus 74 -s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (342)
T d2ovrb2 74 -STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS 152 (342)
T ss_dssp -ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEE
T ss_pred -eecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeee
Confidence 899999999875322111110000 00000000 0 00013457788
Q ss_pred EEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEE
Q 017601 213 VTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSF 291 (369)
Q Consensus 213 ~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~ 291 (369)
++.|+.+++||.+.. .++..+..+ ...+.++ ++++ .+++|+.|++|++||++.++++..+.+| ...+.++++
T Consensus 153 ~~~d~~i~~~d~~~~---~~~~~~~~~-~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~ 225 (342)
T d2ovrb2 153 GAYDFMVKVWDPETE---TCLHTLQGH-TNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMEL 225 (342)
T ss_dssp EETTSCEEEEEGGGT---EEEEEECCC-SSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEE
T ss_pred ecCCCeEEEeecccc---eeeEEEcCc-ccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEeccc-ccceeEEec
Confidence 889999999999887 677777665 3445444 4567 9999999999999999999999999999 899999888
Q ss_pred cCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe-eeeeE-cCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 292 SSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW-LGFSK-CSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 292 sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~-~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
++ ++|++++.|++|++||+...+....+.++... ..+.. ..+++++++|+.||+|++||+++++.
T Consensus 226 ~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~ 292 (342)
T d2ovrb2 226 KD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292 (342)
T ss_dssp ET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred CC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCE
Confidence 76 79999999999999999998888888764311 22222 33789999999999999999998864
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6.9e-26 Score=205.63 Aligned_cols=245 Identities=11% Similarity=0.071 Sum_probs=178.3
Q ss_pred cccccCCcccee-eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCce
Q 017601 84 SMLNRCPHRSEV-QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 84 ~~~~~~~H~~~V-~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 162 (369)
.+.++.+|.+.| .+++|++ .+|++++.+|.|++||+.++ .....+..|. ..+.+++|+|+ .
T Consensus 4 ~~~tL~GH~~~vitc~~~~~------~~l~tgs~Dg~i~vWd~~~~-----~~~~~l~~H~-----~~V~~l~~s~~--~ 65 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQFED------NYVITGADDKMIRVYDSINK-----KFLLQLSGHD-----GGVWALKYAHG--G 65 (355)
T ss_dssp EEEEEECCSSSCEEEEEEET------TEEEEEETTTEEEEEETTTT-----EEEEEEECCS-----SCEEEEEEETT--T
T ss_pred CcEEECCcCCCcEEEEEECC------CEEEEEeCCCeEEEEECCCC-----cEEEEEECCC-----CCEEEEEEcCC--C
Confidence 445578999886 6666642 48999999999999998754 1123334443 34679999983 3
Q ss_pred eEEEEecccceEEEEeCCcceEEEEeee--CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee---
Q 017601 163 MAAVARSFSKSIDVYDQDIHLRTLRTLW--YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC--- 237 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~--- 237 (369)
.++++ +.|++|++|+............ ......... ..+++..+++++.|++|++||+++.. .+....
T Consensus 66 ~l~s~-s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~iw~~~~~~---~~~~~~~~~ 138 (355)
T d1nexb2 66 ILVSG-STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV---EYKNIKYIVTGSRDNTLHVWKLPKES---SVPDHGEEH 138 (355)
T ss_dssp EEEEE-ETTCCEEEEETTTTEEEEEECCCSSCEEEEEEE---EETTEEEEEEEETTSEEEEEECCC--------------
T ss_pred EEEEE-ecccccccccccccccccccccccccccccccc---cccccceeeeecCCCcEEEEEccCCc---eeccccccc
Confidence 67777 8999999999864433222221 111111111 11345578889999999999998652 211110
Q ss_pred --------------------ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCC
Q 017601 238 --------------------GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDS 296 (369)
Q Consensus 238 --------------------~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~ 296 (369)
.+ ...+ .++.+++ .++++..|+.|++||+++++.+..+.++ ...+.++.|+| ++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~-~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~-~~ 213 (355)
T d1nexb2 139 DYPLVFHTPEENPYFVGVLRGH-MASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-TDRIYSTIYDH-ER 213 (355)
T ss_dssp CCCEEESCTTTCTTEEEEEECC-SSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEET-TT
T ss_pred eeccceeccccccceeeeeeec-cccc--cccccccceeeeecccceeeeeecccccceeeeecc-ccccccccccc-cc
Confidence 00 1122 2455667 8999999999999999999999999998 89999999999 99
Q ss_pred CEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEc-CCCCEEEEEeCCCcEEEEECCCCcch
Q 017601 297 NYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKC-SNRDVLGGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 297 ~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~-~d~~~l~sgs~dg~I~iWd~~~~~~~ 360 (369)
.++++++.|++|++||++++.++..+.+|. ..+..+ .++++|++|+.||.|++||+.+....
T Consensus 214 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 276 (355)
T d1nexb2 214 KRCISASMDTTIRIWDLENGELMYTLQGHT--ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 276 (355)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECCCS--SCCCEEEECSSEEEEECTTSEEEEEETTTCCEE
T ss_pred eeeecccccceEEeeecccccccccccccc--ccccccccccceeeeeeccccccccccccccee
Confidence 999999999999999999999999999998 333332 26889999999999999999887643
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=2e-25 Score=202.13 Aligned_cols=244 Identities=14% Similarity=0.075 Sum_probs=170.4
Q ss_pred EEEEEEeCCchhh-hcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC
Q 017601 53 LYKLQVMMDDWFV-SEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD 131 (369)
Q Consensus 53 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~ 131 (369)
|+.+++.+.+.++ ..+.++.++.++..... ....+..|.+.|.+++|+|++ ..+++++.++.+.+|+.......
T Consensus 58 I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~-~~~~~~~~~~~v~~v~~~~~~----~~l~~~~~d~~i~~~~~~~~~~~ 132 (340)
T d1tbga_ 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSG----NYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTE-EEEEEECSCSCEEEEEECTTS----SEEEEEETTCCEEEEESSSSCSC
T ss_pred EEEEEECCCCCEEEEEECCCceeeeecccce-eEEEEecccccEEeeEeeccc----eeeeeecccceeecccccccccc
Confidence 3444555555444 33445544444443332 222345799999999999984 68999999999999987644211
Q ss_pred CccccccccCCCC------------------------------------CCCCCCeeEEEECCCCceeEEEEecccceEE
Q 017601 132 VDRLTYSVLPQDC------------------------------------GVGEGSWSGLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 132 ~~~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
... ...+..+.. ......+....+.+ ....++++ +.|+.|+
T Consensus 133 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~d~~v~ 209 (340)
T d1tbga_ 133 VRV-SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSG-ACDASAK 209 (340)
T ss_dssp CCE-EEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEE-ETTTEEE
T ss_pred ccc-ceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc-ccceeEEe-ecCceEE
Confidence 100 000000000 00112344566777 44566776 8999999
Q ss_pred EEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc-CCCcEEEEEECCCC-
Q 017601 176 VYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS-VGDILYAVCSSSTG- 253 (369)
Q Consensus 176 lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~g- 253 (369)
+||............+...+..+.+ +|++..|++++.|++|++||++.. ..+..+... ....|.+++|+|++
T Consensus 210 i~d~~~~~~~~~~~~h~~~i~~v~~---~p~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~ 283 (340)
T d1tbga_ 210 LWDVREGMCRQTFTGHESDINAICF---FPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECSSSC
T ss_pred EEECCCCcEEEEEeCCCCCeEEEEE---CCCCCEEEEEeCCCeEEEEeeccc---ccccccccccccCceEEEEECCCCC
Confidence 9998643322222234445555543 346778889999999999999987 555554321 14779999999999
Q ss_pred cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 254 NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 254 ~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
+|++|+.||+|++||+++++++.++.+| ...|++++|+| ++.+|+|+|.|++|++||
T Consensus 284 ~l~~g~~dg~i~iwd~~~~~~~~~~~~H-~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 284 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEEEECCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence 9999999999999999999999999999 99999999999 999999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.5e-24 Score=194.23 Aligned_cols=265 Identities=15% Similarity=0.154 Sum_probs=176.8
Q ss_pred CCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcc-------cccccc
Q 017601 68 GKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDR-------LTYSVL 140 (369)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~-------~~~~~~ 140 (369)
+.++..+.++.+..+ ....+.+|.+.|.+++|+|+ .+++++.++.+++|+.......... ......
T Consensus 34 s~Dg~i~vWd~~~~~-~~~~~~~h~~~V~~v~~~~~------~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (342)
T d2ovrb2 34 SDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMRDN------IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 106 (342)
T ss_dssp ETTSCEEEEETTTCC-EEEECCCCSSCEEEEEEETT------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred eCCCeEEEEECCCCC-EEEEEeCCCCCEEEEEeCCC------ccccceecccccccccccccceecccccceeEeeeecc
Confidence 344444333443333 22346789999999999874 8899999999999997643110000 000000
Q ss_pred C-------CCC-------CCC--------CCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeee
Q 017601 141 P-------QDC-------GVG--------EGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFV 198 (369)
Q Consensus 141 ~-------~~~-------~~~--------~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~ 198 (369)
. .+. ... .... ...+.+ ....++.+ +.|+.|++||............+...+...
T Consensus 107 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 183 (342)
T d2ovrb2 107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA-VRCVQY-DGRRVVSG-AYDFMVKVWDPETETCLHTLQGHTNRVYSL 183 (342)
T ss_dssp TTEEEEEETTSEEEEEESSSCCEEEEEECCSSC-EEEEEE-CSSCEEEE-ETTSCEEEEEGGGTEEEEEECCCSSCEEEE
T ss_pred cccccccccceeEEEeecccccceeeeeccccc-ceeecc-ccceeeee-cCCCeEEEeecccceeeEEEcCcccccccc
Confidence 0 000 000 0001 112222 23355666 789999999976433322222233333333
Q ss_pred ccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeec
Q 017601 199 QNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRW 278 (369)
Q Consensus 199 ~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~ 278 (369)
. .++..+++++.|++|++||++.+ +++..+..+ ...+.+++++++ +|++|+.|++|++||+...+....+
T Consensus 184 ~-----~~~~~l~s~~~dg~i~~~d~~~~---~~~~~~~~~-~~~v~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~ 253 (342)
T d2ovrb2 184 Q-----FDGIHVVSGSLDTSIRVWDVETG---NCIHTLTGH-QSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTL 253 (342)
T ss_dssp E-----ECSSEEEEEETTSCEEEEETTTC---CEEEEECCC-CSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEE
T ss_pred c-----CCCCEEEEEeCCCeEEEeecccc---eeeeEeccc-ccceeEEecCCC-EEEEEcCCCEEEEEecccccccccc
Confidence 3 24678999999999999999988 788887766 678888877643 9999999999999999998877766
Q ss_pred cccc--cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE-----cCCC-eeeeeEcCCCCEEEEEeCCCc--
Q 017601 279 VHCS--KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR-----GDSN-WLGFSKCSNRDVLGGWSDSGS-- 348 (369)
Q Consensus 279 ~~h~--~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~-----g~~~-~~~~~~~~d~~~l~sgs~dg~-- 348 (369)
..+. ...+.++.+++ +++++++.|++|++||++++++++.+. +|.. ...+...+++.+|++|+.||+
T Consensus 254 ~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~ 330 (342)
T d2ovrb2 254 QGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330 (342)
T ss_dssp CSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSC
T ss_pred cccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCe
Confidence 6431 56677777765 799999999999999999999988884 3442 123444678999999999996
Q ss_pred --EEEEECC
Q 017601 349 --IFVADVV 355 (369)
Q Consensus 349 --I~iWd~~ 355 (369)
|++||+.
T Consensus 331 ~~l~~~Df~ 339 (342)
T d2ovrb2 331 TKLLVLDFD 339 (342)
T ss_dssp CEEEEEECC
T ss_pred eEEEEEeCC
Confidence 9999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5e-24 Score=187.90 Aligned_cols=237 Identities=14% Similarity=0.107 Sum_probs=176.6
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+..|...|+|++| ++ .+|++++.||.|++||+.+.. ....+..|. ..+.+++|++ .+++++
T Consensus 11 ~~~~~~~V~c~~~--d~----~~l~sgs~Dg~i~vWd~~~~~-----~~~~l~~H~-----~~V~~v~~~~---~~l~s~ 71 (293)
T d1p22a2 11 RSETSKGVYCLQY--DD----QKIVSGLRDNTIKIWDKNTLE-----CKRILTGHT-----GSVLCLQYDE---RVIITG 71 (293)
T ss_dssp CCSSCCCEEEEEC--CS----SEEEEEESSSCEEEEESSSCC-----EEEEECCCS-----SCEEEEECCS---SEEEEE
T ss_pred cCCCCCCEEEEEE--cC----CEEEEEeCCCeEEEEECCCCc-----EEEEEecCC-----CCEeeeeccc---ceeecc
Confidence 5678899999876 32 589999999999999997551 123334443 2356777743 578887
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
+.|++|++|+..................... .....++++..++.+.+||..+.........+..+ ...+.++
T Consensus 72 -s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~ 144 (293)
T d1p22a2 72 -SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR-----FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVV 144 (293)
T ss_dssp -ETTSCEEEEESSSCCEEEEECCCCSCEEEEE-----CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCC-SSCEEEE
T ss_pred -ccccccccccccccccccccccccccccccc-----ccccceeecccccceeEeecccccccccccccccc-ccccccc
Confidence 8999999999864433322222222221221 22468888999999999999877433333344444 5777777
Q ss_pred EECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCC
Q 017601 248 CSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSN 327 (369)
Q Consensus 248 ~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~ 327 (369)
.+.+. .+++++.|++|++||+++++.+..+.+| ...|..+.+++ .++++++.|++|++||+++...+..+.+|..
T Consensus 145 ~~~~~-~~~~~s~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 219 (293)
T d1p22a2 145 DFDDK-YIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEE 219 (293)
T ss_dssp EEETT-EEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred eeccc-ccccccCCCceeeecCCCCcEEEEEccc-ccccccccCCC---CeEEEecCCCEEEEEecccceeeeeecccce
Confidence 76543 6778899999999999999999999999 88898888766 7899999999999999999999999988873
Q ss_pred eeeeeE-cCCCCEEEEEeCCCcEEEEECCCC
Q 017601 328 WLGFSK-CSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 328 ~~~~~~-~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.+.. ..++.+|++|+.||.|++||+.+.
T Consensus 220 --~v~~~~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 220 --LVRCIRFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp --CEEEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred --eeeeccccceEEEEEcCCCEEEEEECCCC
Confidence 3333 458899999999999999997654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.7e-24 Score=192.83 Aligned_cols=228 Identities=11% Similarity=0.085 Sum_probs=153.1
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+|.+.|.+++++++ ..+++++.++++++|+.... .+.. ....+++++ +...++++
T Consensus 43 ~~h~~~V~~~~~~~~-----~~~~s~s~D~~v~~w~~~~~-------~~~~----------~~~~~~~~~-~~~~~~~~- 98 (287)
T d1pgua2 43 QDHSNLIVSLDNSKA-----QEYSSISWDDTLKVNGITKH-------EFGS----------QPKVASANN-DGFTAVLT- 98 (287)
T ss_dssp CCCCSCEEEEECCST-----TCCEEEETTTEEEETTEEEE-------ECSS----------CEEEEEECS-SSEEEEEE-
T ss_pred CCCCCCEEEEEecCC-----CeEEEEeecccccccccccc-------cccc----------ceeeeeecc-CCceEEEe-
Confidence 467777777777654 24566666777777766532 1110 012466666 33344433
Q ss_pred cccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcC-CeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 169 SFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEG-CQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 169 s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d-~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
.++.+.+|+... .+..+. .......+. +++..++.++.+ +.+++|++... +....+.......++
T Consensus 99 -~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~v~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~v~ 166 (287)
T d1pgua2 99 -NDDDLLILQSFTGDIIKSVR---LNSPGSAVS-----LSQNYVAVGLEEGNTIQVFKLSDL---EVSFDLKTPLRAKPS 166 (287)
T ss_dssp -TTSEEEEEETTTCCEEEEEE---CSSCEEEEE-----ECSSEEEEEETTTSCEEEEETTEE---EEEEECSSCCSSCEE
T ss_pred -ecccceeeeccceeeeeecc---ccceeeeee-----ccCcceeeeccccceeeeeecccc---ceeeeeeeccCCcee
Confidence 445566666542 222222 112222222 235566666665 57999999865 444444332257899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeee-eccccccCceEEEEEcCC---------CCCEEEEEECCCeEEEEECc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALS-RWVHCSKYEITGLSFSSI---------DSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~v~~l~~sp~---------d~~~l~s~s~D~~i~vwd~~ 314 (369)
+++|+|++ +|++|+.||.|++||+.+++... .+.+| ...|++++|+|. ++.+|+++|.|++|++||++
T Consensus 167 ~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~ 245 (287)
T d1pgua2 167 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR-TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245 (287)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC-SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred EEEeccCccccccccccccccceeeccccccccccccc-ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence 99999999 99999999999999999987765 57788 999999999872 45789999999999999997
Q ss_pred C-CceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 315 E-SSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 315 ~-~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
+ .+.+..+.+|... ..+...++ ..|++++.|+.|++|++
T Consensus 246 ~~~~~~~~~~~h~~~V~~v~~~~~-~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 246 RPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWNV 286 (287)
T ss_dssp CTTCCEEETTSSTTCEEEEEEEET-TEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEeCCCCCCeEEEEECCC-CEEEEEECCCeEEEEEE
Confidence 7 5566777788732 22222345 46899999999999986
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=4.5e-25 Score=198.62 Aligned_cols=253 Identities=14% Similarity=0.096 Sum_probs=170.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|++.|++|+|+|++ .+|++++.||+|++||+......... .....| ...+.+++|+|.++.+++++
T Consensus 7 ~~~h~d~I~~l~fsp~~----~~L~s~s~Dg~v~iwd~~~~~~~~~~--~~~~~h-----~~~V~~v~f~~~~~~~l~sg 75 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSK----SLLLITSWDGSLTVYKFDIQAKNVDL--LQSLRY-----KHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp SSCCSSCEEEEEEEGGG----TEEEEEETTSEEEEEEEETTTTEEEE--EEEEEC-----SSCEEEEEEEESSSEEEEEE
T ss_pred CCCCCCCEEEEEEeCCC----CEEEEEECCCeEEEEEccCCCcceEE--EEecCC-----CCCEEEEEEeCCCCCEEEEc
Confidence 56899999999999984 68999999999999999865321110 111112 23477899999777788888
Q ss_pred ecccceEEEEeCCcce--EEEEe-----------eeCC---------cceee------------ec---cC---------
Q 017601 168 RSFSKSIDVYDQDIHL--RTLRT-----------LWYP---------SSLNF------------VQ---NL--------- 201 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~--~~~~~-----------~~~~---------~~v~~------------~~---~~--------- 201 (369)
+.|++|++|+..... ..... .... ..+.. .. ..
T Consensus 76 -~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (342)
T d1yfqa_ 76 -TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF 154 (342)
T ss_dssp -ETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE
T ss_pred -ccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeee
Confidence 899999999874111 00000 0000 00000 00 00
Q ss_pred CCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceee----
Q 017601 202 SPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSAL---- 275 (369)
Q Consensus 202 ~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~---- 275 (369)
...+.+..+++++.|+.|++||++.............. ...+.+.++.+.. .+++++.||.+.+|+.......
T Consensus 155 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~ 233 (342)
T d1yfqa_ 155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL-KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp EEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC-SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred eeeccCCceeeecCCCcEEEEecccCcccceeeeeccc-ccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc
Confidence 00123456777888999999998876322222222222 3556666666554 8999999999999997643211
Q ss_pred -----------eeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEe
Q 017601 276 -----------SRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWS 344 (369)
Q Consensus 276 -----------~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs 344 (369)
....+| ...|++++|+| ++++|+|||.||.|++||+++++.+..+..+.....+..++++++|++++
T Consensus 234 ~~~~~~~~~~~~~~~~~-~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~ 311 (342)
T d1yfqa_ 234 KRFAFRCHRLNLKDTNL-AYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311 (342)
T ss_dssp TCEEEECCCCCTTCCSS-CCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE
T ss_pred ccceeeeeeeccCCCcc-cccceeEEecC-CccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEE
Confidence 112355 67899999999 99999999999999999999999988885433212233356899999999
Q ss_pred CCCcEEEEECC
Q 017601 345 DSGSIFVADVV 355 (369)
Q Consensus 345 ~dg~I~iWd~~ 355 (369)
.|+.+++|...
T Consensus 312 sdd~~~~~~~~ 322 (342)
T d1yfqa_ 312 SDDTFKTNAAI 322 (342)
T ss_dssp ECTHHHHCSSS
T ss_pred cCCcEEEeeee
Confidence 99999888653
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.5e-24 Score=189.84 Aligned_cols=249 Identities=12% Similarity=0.068 Sum_probs=175.2
Q ss_pred CCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCC
Q 017601 68 GKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVG 147 (369)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (369)
+.++..+.++.+..+ ....+.+|.+.|.+++|++ .++++++.+|.+++|++..... .........
T Consensus 32 s~Dg~i~vWd~~~~~-~~~~l~~H~~~V~~v~~~~------~~l~s~s~D~~i~~~~~~~~~~-----~~~~~~~~~--- 96 (293)
T d1p22a2 32 LRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYDE------RVIITGSSDSTVRVWDVNTGEM-----LNTLIHHCE--- 96 (293)
T ss_dssp ESSSCEEEEESSSCC-EEEEECCCSSCEEEEECCS------SEEEEEETTSCEEEEESSSCCE-----EEEECCCCS---
T ss_pred eCCCeEEEEECCCCc-EEEEEecCCCCEeeeeccc------ceeecccccccccccccccccc-----ccccccccc---
Confidence 344444433443333 2223568999999999843 4899999999999999986521 111111100
Q ss_pred CCCeeEEEECCCCceeEEEEecccceEEEEeCCcce--EEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeC
Q 017601 148 EGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL--RTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDL 224 (369)
Q Consensus 148 ~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~--~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~ 224 (369)
. ...+.+.. ..++++ ..++.+.+||..... .... ...+...+..... ....+++++.|+.+++||+
T Consensus 97 ---~-~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~s~d~~i~~~d~ 165 (293)
T d1p22a2 97 ---A-VLHLRFNN-GMMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-----DDKYIVSASGDRTIKVWNT 165 (293)
T ss_dssp ---C-EEEEECCT-TEEEEE-ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-----ETTEEEEEETTSEEEEEET
T ss_pred ---c-cccccccc-cceeec-ccccceeEeecccccccccccccccccccccccee-----cccccccccCCCceeeecC
Confidence 1 23333423 355666 789999999975321 2222 2224444444442 2357888999999999999
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
+++ +.+..+..+ ...+..+.+++ ..+++++.|++|++||+++.+.+..+.+| ...+..+ ++ ++.+|++++.
T Consensus 166 ~~~---~~~~~~~~~-~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~--~~-~~~~l~sg~~ 236 (293)
T d1p22a2 166 STC---EFVRTLNGH-KRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGH-EELVRCI--RF-DNKRIVSGAY 236 (293)
T ss_dssp TTC---CEEEEEECC-SSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEE--EC-CSSEEEEEET
T ss_pred CCC---cEEEEEccc-ccccccccCCC-CeEEEecCCCEEEEEecccceeeeeeccc-ceeeeec--cc-cceEEEEEcC
Confidence 988 788888766 57777777652 28999999999999999999999999999 8877754 45 6789999999
Q ss_pred CCeEEEEECcC---------CceeEEEEcCCCeeeeeE-cCCCCEEEEEeCCCcEEEEE
Q 017601 305 DYEVFCGQWRE---------SSKVFAFRGDSNWLGFSK-CSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 305 D~~i~vwd~~~---------~~~~~~~~g~~~~~~~~~-~~d~~~l~sgs~dg~I~iWd 353 (369)
|+.|++||+.. ..++..+.+|. ..+.. ..++.+|+|||.||+|++||
T Consensus 237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~--~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred CCEEEEEECCCCccccccCCceeeEEecCCC--CCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 99999999754 35678888998 33333 23788999999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=7.4e-24 Score=188.66 Aligned_cols=237 Identities=14% Similarity=0.030 Sum_probs=170.9
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|.+.|++|+|+| |++++.+|.|++||+.+.. ..|. ..+.+++|++. ..+++
T Consensus 8 ~l~gH~~~I~~l~~s~--------l~sgs~Dg~v~~Wd~~~~~----------~~h~-----~~V~~~~~~~~--~~~~s 62 (287)
T d1pgua2 8 TISGHNKGITALTVNP--------LISGSYDGRIMEWSSSSMH----------QDHS-----NLIVSLDNSKA--QEYSS 62 (287)
T ss_dssp EECCCSSCEEEEETTT--------TEEEETTSCEEETTTTEEE----------CCCC-----SCEEEEECCST--TCCEE
T ss_pred EECCCCCceEEEEECc--------EEEEeCCCeEEEEECCCCC----------CCCC-----CCEEEEEecCC--CeEEE
Confidence 3679999999999954 7899999999999976431 1122 23668999873 35677
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+ +.|++|++|+..... ....+..+.+. + ++.++..+.++.+.+|+..++ ..+..+... ..+.
T Consensus 63 ~-s~D~~v~~w~~~~~~----~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~- 124 (287)
T d1pgua2 63 I-SWDDTLKVNGITKHE----FGSQPKVASAN------N-DGFTAVLTNDDDLLILQSFTG---DIIKSVRLN--SPGS- 124 (287)
T ss_dssp E-ETTTEEEETTEEEEE----CSSCEEEEEEC------S-SSEEEEEETTSEEEEEETTTC---CEEEEEECS--SCEE-
T ss_pred E-eeccccccccccccc----cccceeeeeec------c-CCceEEEeecccceeeeccce---eeeeecccc--ceee-
Confidence 7 899999999864211 11111222221 2 456777778888999999887 677777655 5544
Q ss_pred EEECCCC-cEEEEeCC-CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE-EE
Q 017601 247 VCSSSTG-NIAVAGAD-RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA-FR 323 (369)
Q Consensus 247 v~~sp~g-~lasgs~D-~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~-~~ 323 (369)
+++|++ .+++++.| +.|++|++...+....+...+...+++++|+| ++.+|++++.|+.|++||+.+++.... +.
T Consensus 125 -~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 202 (287)
T d1pgua2 125 -AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWA 202 (287)
T ss_dssp -EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred -eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEecc-Cccccccccccccccceeeccccccccccc
Confidence 456677 67666665 57999999887766666543288999999999 999999999999999999998765443 45
Q ss_pred cCCCe-eeeeEc----------CCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 324 GDSNW-LGFSKC----------SNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 324 g~~~~-~~~~~~----------~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
+|... ..+..+ .++.+|++|+.|++|++||++++...+..+.||.
T Consensus 203 ~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~ 258 (287)
T d1pgua2 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258 (287)
T ss_dssp CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST
T ss_pred ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCC
Confidence 66521 222222 2678999999999999999988766666667764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=5.9e-22 Score=180.77 Aligned_cols=243 Identities=10% Similarity=-0.037 Sum_probs=157.6
Q ss_pred CCccceeeEEEEeecCCCCceEEEE-EecC-CcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGS-VDSY-GHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las-~d~~-g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+|.+.|++++|+||+ ..|++ ++.+ ..+++||..++. ...+..+ ...+.+++|+|+ ...+++
T Consensus 39 ~~~~~~v~~~~~spDg----~~l~~~~~~~g~~v~v~d~~~~~------~~~~~~~-----~~~v~~~~~spd-g~~l~~ 102 (360)
T d1k32a3 39 VPEPLRIRYVRRGGDT----KVAFIHGTREGDFLGIYDYRTGK------AEKFEEN-----LGNVFAMGVDRN-GKFAVV 102 (360)
T ss_dssp CSCCSCEEEEEECSSS----EEEEEEEETTEEEEEEEETTTCC------EEECCCC-----CCSEEEEEECTT-SSEEEE
T ss_pred ccCCCCEEEEEECCCC----CEEEEEEcCCCCEEEEEECCCCc------EEEeeCC-----CceEEeeeeccc-ccccce
Confidence 4799999999999984 45544 3333 378999987542 1112222 233668999995 557777
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE----------cCCeEEEEeCCcccCCceeeee
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT----------EGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s----------~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
+ +.++.+.+|+............+...+..+. ++|++..|+.+. .++.+++||++++ +.....
T Consensus 103 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~~ 175 (360)
T d1k32a3 103 A-NDRFEIMTVDLETGKPTVIERSREAMITDFT---ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---KIFAAT 175 (360)
T ss_dssp E-ETTSEEEEEETTTCCEEEEEECSSSCCCCEE---ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---EEEECS
T ss_pred e-ccccccccccccccceeeeeecccccccchh---hccceeeeeeeccccccceeeccccceeeeccccC---ceeeec
Confidence 7 8899999999864322211222222222222 235666666543 2457999999887 554444
Q ss_pred eccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceee-------eecccc---------------------------
Q 017601 237 CGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL-------SRWVHC--------------------------- 281 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~-------~~~~~h--------------------------- 281 (369)
.+. ..+..++|+|+| .|++++.|+.+++||....... ..+..|
T Consensus 176 ~~~--~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 253 (360)
T d1k32a3 176 TEN--SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253 (360)
T ss_dssp CSS--SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred ccc--cccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccc
Confidence 444 788999999999 9999999999999997542211 000000
Q ss_pred --------ccCceEEEEEcCCCC-------------CEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEE
Q 017601 282 --------SKYEITGLSFSSIDS-------------NYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVL 340 (369)
Q Consensus 282 --------~~~~v~~l~~sp~d~-------------~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l 340 (369)
.......+...+ ++ .++++++.|+.+++||+.+++.. .+.++. ..+..++||++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~v--~~~~~SpDG~~l 329 (360)
T d1k32a3 254 KRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVKNNL--TDLRLSADRKTV 329 (360)
T ss_dssp GGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEEEEE--EEEEECTTSCEE
T ss_pred cceeecccCcCceeEeeecC-CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-EecCCc--CEEEECCCCCEE
Confidence 011122233322 21 23456667889999999887653 444554 456668899999
Q ss_pred EEEeCCCcEEEEECCCCcch
Q 017601 341 GGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 341 ~sgs~dg~I~iWd~~~~~~~ 360 (369)
++++.||.|++||+++++.+
T Consensus 330 ~~~~~Dg~i~v~d~~~~~~~ 349 (360)
T d1k32a3 330 MVRKDDGKIYTFPLEKPEDE 349 (360)
T ss_dssp EEEETTSCEEEEESSCTTSC
T ss_pred EEEECCCeEEEEECCCCCcc
Confidence 99999999999999988754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.84 E-value=2.2e-18 Score=152.81 Aligned_cols=241 Identities=13% Similarity=0.104 Sum_probs=172.2
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
+..+....++|+||+ ..+.++...++.|.+||+.+... ...+..+. ...+++|++++...++++ .
T Consensus 29 ~~g~~p~~va~spdG---~~l~v~~~~~~~i~v~d~~t~~~-----~~~~~~~~------~~~~~~~~~~~~~~~~~~-~ 93 (301)
T d1l0qa2 29 PVGSNPMGAVISPDG---TKVYVANAHSNDVSIIDTATNNV-----IATVPAGS------SPQGVAVSPDGKQVYVTN-M 93 (301)
T ss_dssp ECSSSEEEEEECTTS---SEEEEEEGGGTEEEEEETTTTEE-----EEEEECSS------SEEEEEECTTSSEEEEEE-T
T ss_pred ECCCCceEEEEeCCC---CEEEEEECCCCEEEEEECCCCce-----eeeeeccc------cccccccccccccccccc-c
Confidence 444667899999985 34446777889999999975511 11121111 234799999766666655 8
Q ss_pred ccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEE-EcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 170 FSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAV-TEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 170 ~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~-s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
.++.+.+|+.... ...+.....+..+.+ ++++..++.+ ..++.+.+||..+. ..+..+... ..+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~dg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~ 162 (301)
T d1l0qa2 94 ASSTLSVIDTTSNTVAGTVKTGKSPLGLAL------SPDGKKLYVTNNGDKTVSVINTVTK---AVINTVSVG--RSPKG 162 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEEEEEE------CTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECC--SSEEE
T ss_pred ccceeeecccccceeeeeccccccceEEEe------ecCCCeeeeeeccccceeeeecccc---ceeeecccC--CCceE
Confidence 8999999998643 333322222222222 2456666554 45889999999988 777777766 77899
Q ss_pred EEECCCC-cEEEEeC-CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC---CCeEEEEECcCCceeEE
Q 017601 247 VCSSSTG-NIAVAGA-DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV---DYEVFCGQWRESSKVFA 321 (369)
Q Consensus 247 v~~sp~g-~lasgs~-D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~---D~~i~vwd~~~~~~~~~ 321 (369)
++++|++ .+++++. ++.+.+|+....+....+..+ ..+..++|++ ++..++.++. +++|++||+.+++.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~ 239 (301)
T d1l0qa2 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE--AAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITAR 239 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEE
T ss_pred EEeeccccceeeecccccccccccccceeeeeccccc--CCcceeeccc-cccccccccccceeeeeeeeecCCCeEEEE
Confidence 9999999 6666554 567778888877777666654 5678899999 9998776543 46899999999999888
Q ss_pred EEcCCCeeeeeEcCCCCEE-EEEeCCCcEEEEECCCCcc
Q 017601 322 FRGDSNWLGFSKCSNRDVL-GGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 322 ~~g~~~~~~~~~~~d~~~l-~sgs~dg~I~iWd~~~~~~ 359 (369)
+..+....++..++||++| ++++.|++|++||+++++.
T Consensus 240 ~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 240 IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278 (301)
T ss_dssp EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred EcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 8766544567778899876 6888899999999999864
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=8.8e-20 Score=163.45 Aligned_cols=203 Identities=16% Similarity=0.131 Sum_probs=128.6
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCC--cceEEE-EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCC
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTL-RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLR 225 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~ 225 (369)
.++++|+|+|+ ..+||++ |.|++|+|||.. .....+ ....|...+..+.+.+ +++..+++++.|++|++||+.
T Consensus 12 d~I~~l~fsp~-~~~L~s~-s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~--~~~~~l~sg~~d~~v~~w~~~ 87 (342)
T d1yfqa_ 12 DYISDIKIIPS-KSLLLIT-SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID--NTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp SCEEEEEEEGG-GTEEEEE-ETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE--SSSEEEEEEETTSCEEEECSS
T ss_pred CCEEEEEEeCC-CCEEEEE-ECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeC--CCCCEEEEcccccceeeeecc
Confidence 35789999994 5678888 899999999964 222222 2334554444444322 223467778899999999998
Q ss_pred cccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee----eccccc-cCceEEEEEcCCCCCEE
Q 017601 226 MKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS----RWVHCS-KYEITGLSFSSIDSNYI 299 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~----~~~~h~-~~~v~~l~~sp~d~~~l 299 (369)
.. ........+.........+.++. .+++++.|+++++||++...... ....+. ........+.+ ++..+
T Consensus 88 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 163 (342)
T d1yfqa_ 88 GS---PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRL 163 (342)
T ss_dssp SS---SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEE
T ss_pred cc---cccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec-cCCce
Confidence 77 44444333212444455566666 99999999999999987643322 222220 12334455566 66777
Q ss_pred EEEECCCeEEEEECcCCcee----------------------------------------------------EEE-----
Q 017601 300 YVQGVDYEVFCGQWRESSKV----------------------------------------------------FAF----- 322 (369)
Q Consensus 300 ~s~s~D~~i~vwd~~~~~~~----------------------------------------------------~~~----- 322 (369)
++++.|+.|++||++..+.. ..+
T Consensus 164 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T d1yfqa_ 164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred eeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeee
Confidence 77888888888877542100 000
Q ss_pred ----EcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 323 ----RGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 323 ----~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.+|. ....+...|++.+|+||+.||.|++||+++++.
T Consensus 244 ~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~ 285 (342)
T d1yfqa_ 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred ccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcE
Confidence 0111 001233456899999999999999999998764
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.81 E-value=3.7e-19 Score=167.75 Aligned_cols=253 Identities=10% Similarity=0.015 Sum_probs=151.2
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
...+..|+||||+ .++++++.+|.+++||+.+..... ...+.... .+ .....+++|+|++..+++++ ..+
T Consensus 61 g~~~~~vafSPDG----k~l~~~~~d~~v~vwd~~t~~~~~---~~~i~~~~-~~-~~~~~s~~~spDG~~l~v~~-~~~ 130 (426)
T d1hzua2 61 GYAVHISRMSASG----RYLLVIGRDARIDMIDLWAKEPTK---VAEIKIGI-EA-RSVESSKFKGYEDRYTIAGA-YWP 130 (426)
T ss_dssp CSSEEEEEECTTS----CEEEEEETTSEEEEEETTSSSCEE---EEEEECCS-EE-EEEEECCSTTCTTTEEEEEE-EES
T ss_pred CCCeeEEEECCCC----CEEEEEeCCCCEEEEEccCCceeE---EEEEeCCC-CC-cceEEeeeecCCCCEEEEee-cCC
Confidence 3568999999984 688888899999999998663211 11111100 00 01122466778665444444 789
Q ss_pred ceEEEEeCCc--ceEEEEeee-CCcceeeecc-----CCCCCCCCcEEEE-EcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 172 KSIDVYDQDI--HLRTLRTLW-YPSSLNFVQN-----LSPVNGGPNMLAV-TEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 172 ~~i~lwd~~~--~~~~~~~~~-~~~~v~~~~~-----~~~~~~~~~lla~-s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
+++++||... ....+.... ......+... ...++++..++.. .+.+.+.+++...... ..+..+.. +.
T Consensus 131 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~--~~ 207 (426)
T d1hzua2 131 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-LTVTSIGA--AP 207 (426)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSS-CEEEEEEC--CS
T ss_pred CeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccc-eeeEEecc--CC
Confidence 9999999763 232222111 1111111110 0011223233322 2344555555544421 12222333 47
Q ss_pred cEEEEEECCCC-cEEEE-eCCCcEEEEeCCCc------------------------------------------------
Q 017601 243 ILYAVCSSSTG-NIAVA-GADRTVTIYDPRRW------------------------------------------------ 272 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasg-s~D~~v~vwD~~~~------------------------------------------------ 272 (369)
.+..++|+|++ +++++ ..+..+.+||..++
T Consensus 208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~ 287 (426)
T d1hzua2 208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN 287 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc
Confidence 78899999998 54444 34555566655422
Q ss_pred ------eeeeeccccccCceEEEEEcCCCCCEEE-------EEECCCeEEEEECcCCceeEEEE----------cCCCee
Q 017601 273 ------SALSRWVHCSKYEITGLSFSSIDSNYIY-------VQGVDYEVFCGQWRESSKVFAFR----------GDSNWL 329 (369)
Q Consensus 273 ------~~~~~~~~h~~~~v~~l~~sp~d~~~l~-------s~s~D~~i~vwd~~~~~~~~~~~----------g~~~~~ 329 (369)
+...++.+| ...+.+++|+| |+++|+ +++.|++|++||+++++..+.+. ++.+..
T Consensus 288 ~~~~~~~~~~~l~g~-~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~ 365 (426)
T d1hzua2 288 HPQYAWKKVAELQGQ-GGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV 365 (426)
T ss_dssp CTTTBTSEEEEEECS-SSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEE
T ss_pred cccccceEeEEEecC-CCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEE
Confidence 334456677 78899999999 999999 45678999999999987766652 222334
Q ss_pred eeeEcCCCCEE-EEE----eCCCcEEEEECCCCcc
Q 017601 330 GFSKCSNRDVL-GGW----SDSGSIFVADVVAKEN 359 (369)
Q Consensus 330 ~~~~~~d~~~l-~sg----s~dg~I~iWd~~~~~~ 359 (369)
.+..++||++| +++ +.+|.|+|||.+|++.
T Consensus 366 ~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~ 400 (426)
T d1hzua2 366 QPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 400 (426)
T ss_dssp EEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred EEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence 55668899866 443 4688999999999873
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.81 E-value=5.5e-19 Score=160.75 Aligned_cols=190 Identities=15% Similarity=0.000 Sum_probs=146.8
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCC--eEEEEeCCcccC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC--QLTIWDLRMKEN 229 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~--~v~iwD~~~~~~ 229 (369)
.-.|||.++.++|++ + .+.|.+||... .+..+ .|...+..+. ++||+..|++++.+. .|++||++++
T Consensus 7 ~~~fSP~dG~~~a~~-~-~g~v~v~d~~~~~~~~~---~~~~~v~~~~---~spDg~~l~~~~~~~g~~v~v~d~~~~-- 76 (360)
T d1k32a3 7 AEDFSPLDGDLIAFV-S-RGQAFIQDVSGTYVLKV---PEPLRIRYVR---RGGDTKVAFIHGTREGDFLGIYDYRTG-- 76 (360)
T ss_dssp EEEEEECGGGCEEEE-E-TTEEEEECTTSSBEEEC---SCCSCEEEEE---ECSSSEEEEEEEETTEEEEEEEETTTC--
T ss_pred cccccCCCCCEEEEE-E-CCeEEEEECCCCcEEEc---cCCCCEEEEE---ECCCCCEEEEEEcCCCCEEEEEECCCC--
Confidence 357999666677776 3 57999999853 23222 3555555555 346777887777553 7999999886
Q ss_pred CceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE-----
Q 017601 230 GGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG----- 303 (369)
Q Consensus 230 ~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s----- 303 (369)
... .+..+ ...|.+++|+|+| +|++++.++.+++||+.+++....+..| ...+.+++|+| |+++|+.++
T Consensus 77 -~~~-~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp-dg~~la~~~~~~~~ 151 (360)
T d1k32a3 77 -KAE-KFEEN-LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFTISD-NSRFIAYGFPLKHG 151 (360)
T ss_dssp -CEE-ECCCC-CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEEECT-TSCEEEEEEEECSS
T ss_pred -cEE-EeeCC-CceEEeeeecccccccceeccccccccccccccceeeeeecc-cccccchhhcc-ceeeeeeecccccc
Confidence 444 44444 4889999999999 9999999999999999999998888888 89999999999 999998654
Q ss_pred -----CCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 304 -----VDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 304 -----~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.++.+++||+.+++.......+........++||+.|++++.|+.+.+|+....
T Consensus 152 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 152 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred ceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence 345799999998877665554443344555789999999999999999997654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=1.5e-17 Score=149.47 Aligned_cols=231 Identities=9% Similarity=0.008 Sum_probs=155.7
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCC--cceEEE
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTL 186 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~ 186 (369)
..++++..+++|.+||+.+.. ....+..+..+ ....+++|+|++..+++++ +.++.|.+||.. +.+..+
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~-----~~~~i~~~~~~---~~~~~i~~spDg~~l~v~~-~~~~~v~v~D~~t~~~~~~~ 72 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMA-----VDKVITIADAG---PTPMVPMVAPGGRIAYATV-NKSESLVKIDLVTGETLGRI 72 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE-----EEEEEECTTCT---TCCCCEEECTTSSEEEEEE-TTTTEEEEEETTTCCEEEEE
T ss_pred eEEEEEcCCCEEEEEECCCCe-----EEEEEECCCCC---CCccEEEECCCCCEEEEEE-CCCCeEEEEECCCCcEEEEE
Confidence 367788889999999998651 11122211111 1123699999665555555 889999999985 333333
Q ss_pred EeeeCCcceeeeccCCCCCCCCcEEEEE------------cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-
Q 017601 187 RTLWYPSSLNFVQNLSPVNGGPNMLAVT------------EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG- 253 (369)
Q Consensus 187 ~~~~~~~~v~~~~~~~~~~~~~~lla~s------------~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g- 253 (369)
................+++++..++++. .+..+.+||..++ ..+..+... ..+.+++|+|+|
T Consensus 73 ~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~~--~~~~~~~~s~dg~ 147 (337)
T d1pbyb_ 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAFEAP--RQITMLAWARDGS 147 (337)
T ss_dssp ECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEEECC--SSCCCEEECTTSS
T ss_pred ecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC---eEEEecccc--CCceEEEEcCCCC
Confidence 3221111111112222345666776654 3678999999988 777777766 778899999999
Q ss_pred cEEEEeCCCcEEEEeCCCceeeeecc------------------------------------------------------
Q 017601 254 NIAVAGADRTVTIYDPRRWSALSRWV------------------------------------------------------ 279 (369)
Q Consensus 254 ~lasgs~D~~v~vwD~~~~~~~~~~~------------------------------------------------------ 279 (369)
++++++.+ +.+||..+++...++.
T Consensus 148 ~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
T d1pbyb_ 148 KLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp CEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred EEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE
Confidence 88887654 6778877654433221
Q ss_pred ------------ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCC
Q 017601 280 ------------HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSG 347 (369)
Q Consensus 280 ------------~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg 347 (369)
.+ ...+..+.++| ++.+++.+ |+.|++||+++++.+..+.......++...+||++|++++.|+
T Consensus 226 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~ 301 (337)
T d1pbyb_ 226 LETGEMAMREVRIM-DVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp TTTCCEEEEEEEEC-SSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSS
T ss_pred cCCCcEEEEEecCC-CcceEEEEecc-cceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCC
Confidence 12 23345567777 77777655 5899999999999888876544335666788999999999999
Q ss_pred cEEEEECCCCcc
Q 017601 348 SIFVADVVAKEN 359 (369)
Q Consensus 348 ~I~iWd~~~~~~ 359 (369)
+|++||.++++.
T Consensus 302 ~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 302 DLAAYDAETLEK 313 (337)
T ss_dssp EEEEEETTTCCE
T ss_pred cEEEEECCCCcE
Confidence 999999998864
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.72 E-value=6e-15 Score=130.18 Aligned_cols=222 Identities=12% Similarity=0.097 Sum_probs=157.4
Q ss_pred EEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEee
Q 017601 112 GSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTL 189 (369)
Q Consensus 112 as~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~ 189 (369)
++...++.|.+||+.+.. + ...+... ....+++|+|++..+++++ +.++.|++||... .++.+...
T Consensus 6 V~~~~~~~v~v~D~~t~~--~---~~~i~~g------~~p~~va~spdG~~l~v~~-~~~~~i~v~d~~t~~~~~~~~~~ 73 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNK--V---TATIPVG------SNPMGAVISPDGTKVYVAN-AHSNDVSIIDTATNNVIATVPAG 73 (301)
T ss_dssp EEETTTTEEEEEETTTTE--E---EEEEECS------SSEEEEEECTTSSEEEEEE-GGGTEEEEEETTTTEEEEEEECS
T ss_pred EEECCCCEEEEEECCCCe--E---EEEEECC------CCceEEEEeCCCCEEEEEE-CCCCEEEEEECCCCceeeeeecc
Confidence 345677899999987651 1 1111111 1134799999665555555 8899999999863 34444333
Q ss_pred eCCcceeeeccCCCCCCCCcEEE-EEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEE
Q 017601 190 WYPSSLNFVQNLSPVNGGPNMLA-VTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTI 266 (369)
Q Consensus 190 ~~~~~v~~~~~~~~~~~~~~lla-~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~v 266 (369)
..+..+.+. +++..++. ...++.+.+||..++ +.+..+..+ ....+++|+|++ .++++..++.+.+
T Consensus 74 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~dg~~~~~~~~~~~~~~~ 142 (301)
T d1l0qa2 74 SSPQGVAVS------PDGKQVYVTNMASSTLSVIDTTSN---TVAGTVKTG--KSPLGLALSPDGKKLYVTNNGDKTVSV 142 (301)
T ss_dssp SSEEEEEEC------TTSSEEEEEETTTTEEEEEETTTT---EEEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ccccccccc------cccccccccccccceeeecccccc---eeeeecccc--ccceEEEeecCCCeeeeeeccccceee
Confidence 333344433 34555555 446789999999987 777777776 778999999999 5567778999999
Q ss_pred EeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC-CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEe-
Q 017601 267 YDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD-YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWS- 344 (369)
Q Consensus 267 wD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D-~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs- 344 (369)
||..+...+..+..+ ..+..+.++| ++..+++++.+ +.+.+|+....+....+..+....++...+++..++.++
T Consensus 143 ~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~ 219 (301)
T d1l0qa2 143 INTVTKAVINTVSVG--RSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV 219 (301)
T ss_dssp EETTTTEEEEEEECC--SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE
T ss_pred eeccccceeeecccC--CCceEEEeec-cccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccc
Confidence 999999888887765 5578999999 88888887765 578888888887777777666334455566888766543
Q ss_pred --CCCcEEEEECCCCcc
Q 017601 345 --DSGSIFVADVVAKEN 359 (369)
Q Consensus 345 --~dg~I~iWd~~~~~~ 359 (369)
.+++|++||+.+++.
T Consensus 220 ~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 220 DKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp CSSCCEEEEEETTTTEE
T ss_pred cceeeeeeeeecCCCeE
Confidence 346899999998764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.71 E-value=1e-16 Score=144.37 Aligned_cols=250 Identities=11% Similarity=-0.009 Sum_probs=156.8
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+|...+.+++|+||+ ..++++...++.|.+||+.+... +. .......... ......+++|+|++..++++..
T Consensus 36 ~~~~~~p~~l~~spDG---~~l~v~~~~~~~v~~~d~~t~~~-~~--~~~~~~~~~~-~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 36 MPDKFGPGTAMMAPDN---RTAYVLNNHYGDIYGIDLDTCKN-TF--HANLSSVPGE-VGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp CSSCCSSCEEEECTTS---SEEEEEETTTTEEEEEETTTTEE-EE--EEESCCSTTE-EEECSSCEEECTTSSEEEEEEE
T ss_pred cCCCCCcceEEECCCC---CEEEEEECCCCcEEEEeCccCee-ee--eecccccccc-cCCceEEEEEecCCCEEEEEec
Confidence 4667778999999985 34556667789999999986521 10 1111000000 0001236999996654443321
Q ss_pred ----------cccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee
Q 017601 169 ----------SFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 169 ----------s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
..+..+.+||.. .....+.....+........ ++++.+++.+ +.+.+||+.++ +.+..+
T Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~---~~~~~~ 179 (346)
T d1jmxb_ 109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA----ADDGSLYVAG--PDIYKMDVKTG---KYTVAL 179 (346)
T ss_dssp EEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE----CTTSCEEEES--SSEEEECTTTC---CEEEEE
T ss_pred CCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEe----cCCCEEEEeC--CcceEEEccCC---CEEEEE
Confidence 135667777754 22223333323332222221 2244555543 56889999887 666666
Q ss_pred eccCCCcEEEEEECCCC---------------------------cEEEEeCCCcEEEEeCCCceeee-eccccccCceEE
Q 017601 237 CGSVGDILYAVCSSSTG---------------------------NIAVAGADRTVTIYDPRRWSALS-RWVHCSKYEITG 288 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g---------------------------~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~v~~ 288 (369)
..+ .....+.++|++ .++++..+..+.+||..++.... .+..| ...+..
T Consensus 180 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 256 (346)
T d1jmxb_ 180 PLR--NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL-TELYFT 256 (346)
T ss_dssp CST--TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEEC-SSCEEE
T ss_pred ecC--CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecc-cceeEE
Confidence 543 333344444444 23344556678888888876554 44566 788999
Q ss_pred EEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 289 LSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 289 l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.+++ ++.+++..+ ++.|.+||..+++.+..+.......++..++||++|++++.|+.|++||+++++.
T Consensus 257 ~~~~~-~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~ 325 (346)
T d1jmxb_ 257 GLRSP-KDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325 (346)
T ss_dssp EEECS-SCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred EEEeC-CCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCE
Confidence 99999 777776665 4689999999999888876433335677788999999999999999999999874
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.70 E-value=6.3e-15 Score=138.35 Aligned_cols=232 Identities=13% Similarity=0.001 Sum_probs=148.1
Q ss_pred ceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEE
Q 017601 108 YMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRT 185 (369)
Q Consensus 108 ~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~ 185 (369)
..++++...+|.|.+||+.++. .+ ..+..+ ..+.+++|+|++ .+++++ +.|++|++||... ....
T Consensus 32 ~~~~V~~~~dg~v~vwD~~t~~-~~----~~l~~g------~~~~~vafSPDG-k~l~~~-~~d~~v~vwd~~t~~~~~~ 98 (426)
T d1hzua2 32 NLFSVTLRDAGQIALVDGDSKK-IV----KVIDTG------YAVHISRMSASG-RYLLVI-GRDARIDMIDLWAKEPTKV 98 (426)
T ss_dssp GEEEEEETTTTEEEEEETTTCS-EE----EEEECC------SSEEEEEECTTS-CEEEEE-ETTSEEEEEETTSSSCEEE
T ss_pred eEEEEEEcCCCEEEEEECCCCc-EE----EEEeCC------CCeeEEEECCCC-CEEEEE-eCCCCEEEEEccCCceeEE
Confidence 4567888899999999998651 11 122211 125589999954 567777 7899999999852 2222
Q ss_pred --EEeeeCCcceeeeccCCCCCCCCcEEEE-EcCCeEEEEeCCcccCCceeeeeeccC----------CCcEEEEEECCC
Q 017601 186 --LRTLWYPSSLNFVQNLSPVNGGPNMLAV-TEGCQLTIWDLRMKENGGCLHRICGSV----------GDILYAVCSSST 252 (369)
Q Consensus 186 --~~~~~~~~~v~~~~~~~~~~~~~~lla~-s~d~~v~iwD~~~~~~~~~~~~~~~~~----------~~~v~~v~~sp~ 252 (369)
++....+..+.+ ...++||+.+++++ ..++++++||..++ .++..+..+. ......++++++
T Consensus 99 ~~i~~~~~~~~~~~--s~~~spDG~~l~v~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 173 (426)
T d1hzua2 99 AEIKIGIEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETL---EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 173 (426)
T ss_dssp EEEECCSEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTC---CEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred EEEeCCCCCcceEE--eeeecCCCCEEEEeecCCCeEEEEcCCcc---ceeEEeeccCCCccceeecCCCceeEEEECCC
Confidence 222222222222 33466788877654 47999999999987 5555544320 234556677777
Q ss_pred C-c-EEEEeCCCcEEEEeCCCceee-eeccccccCceEEEEEcCCCCCEEEEEEC-CCeEEEEECcCC------------
Q 017601 253 G-N-IAVAGADRTVTIYDPRRWSAL-SRWVHCSKYEITGLSFSSIDSNYIYVQGV-DYEVFCGQWRES------------ 316 (369)
Q Consensus 253 g-~-lasgs~D~~v~vwD~~~~~~~-~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~~~~------------ 316 (369)
+ . +.+....+.+.+++......+ ....++ ...+..+.|+| ++++++++.. +..+.+||..++
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (426)
T d1hzua2 174 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA-APFLADGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 251 (426)
T ss_dssp SSEEEEEETTTTEEEEEECSSSSSCEEEEEEC-CSSEEEEEECT-TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCC
T ss_pred CCEEEEecCCCCeEEEEEeccccceeeEEecc-CCccEeeeECC-CCcEEEeeeecccceeeeecccccEEEEeccCCcc
Confidence 7 3 334444566666766654432 233456 77889999999 8888777654 456777776543
Q ss_pred ------------------------------------------ceeEEEEcCCCe-eeeeEcCCCCEEE-------EEeCC
Q 017601 317 ------------------------------------------SKVFAFRGDSNW-LGFSKCSNRDVLG-------GWSDS 346 (369)
Q Consensus 317 ------------------------------------------~~~~~~~g~~~~-~~~~~~~d~~~l~-------sgs~d 346 (369)
+....+.+|... ..+...||+.+|+ +++.|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~ 331 (426)
T d1hzua2 252 HPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS 331 (426)
T ss_dssp CCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHH
T ss_pred cccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccC
Confidence 233445555421 2233366999998 56778
Q ss_pred CcEEEEECCCCcc
Q 017601 347 GSIFVADVVAKEN 359 (369)
Q Consensus 347 g~I~iWd~~~~~~ 359 (369)
++|+|||+++++.
T Consensus 332 ~tv~vwd~~t~~~ 344 (426)
T d1hzua2 332 QSVAVFDLKNLDA 344 (426)
T ss_dssp TCEEEEETTCTTS
T ss_pred CEEEEEECCCCCc
Confidence 9999999998764
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=2.7e-14 Score=134.53 Aligned_cols=195 Identities=9% Similarity=-0.077 Sum_probs=136.8
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc----ceE
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI----HLR 184 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~----~~~ 184 (369)
.++++.+.+|+|.+||..+... ...+..+. .+.+++|+|+ +.+++++ +.|++|++||+.. ...
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v-----~~~~~~g~------~~~~v~fSpD-G~~l~~~-s~dg~v~~~d~~t~~~~~~~ 99 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEI-----KTVLDTGY------AVHISRLSAS-GRYLFVI-GRDGKVNMIDLWMKEPTTVA 99 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCE-----EEEEECSS------CEEEEEECTT-SCEEEEE-ETTSEEEEEETTSSSCCEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcE-----EEEEeCCC------CeeEEEECCC-CCEEEEE-cCCCCEEEEEeeCCCceEEE
Confidence 5678889999999999886521 11222111 2458999995 5567777 7899999999752 223
Q ss_pred EEEeeeCCcceeeeccCCCCCCCCcEE-EEEcCCeEEEEeCCcccCCceeeeeeccC----------CCcEEEEEECCCC
Q 017601 185 TLRTLWYPSSLNFVQNLSPVNGGPNML-AVTEGCQLTIWDLRMKENGGCLHRICGSV----------GDILYAVCSSSTG 253 (369)
Q Consensus 185 ~~~~~~~~~~v~~~~~~~~~~~~~~ll-a~s~d~~v~iwD~~~~~~~~~~~~~~~~~----------~~~v~~v~~sp~g 253 (369)
.+.....+..+.+. ..++||+.+++ +++.+++|+|||..++ +++..+..+. .....++.++|+|
T Consensus 100 ~i~~~~~~~~~~~s--~~~SpDG~~l~vs~~~~~~v~i~d~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg 174 (432)
T d1qksa2 100 EIKIGSEARSIETS--KMEGWEDKYAIAGAYWPPQYVIMDGETL---EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 174 (432)
T ss_dssp EEECCSEEEEEEEC--CSTTCTTTEEEEEEEETTEEEEEETTTC---CEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred EEecCCCCCCeEEe--cccCCCCCEEEEEcCCCCeEEEEeCccc---cceeeeccCCccccceeccCCCceeEEEECCCC
Confidence 33332233333332 34668887764 5677999999999988 6665544210 3567789999999
Q ss_pred --cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEEEC-CCeEEEEECcCCceeEEEE
Q 017601 254 --NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQGV-DYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 254 --~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~~~~~~~~~~~ 323 (369)
++++...++.|.+||..+.+...... .+ ...+..++|+| |++++++++. ++.+.++|..+.+....+.
T Consensus 175 ~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~-g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~~~~~~~~~ 246 (432)
T d1qksa2 175 PEFIVNVKETGKILLVDYTDLNNLKTTEISA-ERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIED 246 (432)
T ss_dssp SEEEEEETTTTEEEEEETTCSSEEEEEEEEC-CSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEccCCeEEEEEccCCCcceEEEEcc-cCccccceECC-CCCEEEEeccccceEEEeecccceEEEEec
Confidence 56778889999999998876655443 33 56788999999 9998877776 5589999998877666553
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=7e-15 Score=131.62 Aligned_cols=213 Identities=11% Similarity=0.063 Sum_probs=132.5
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.+...+.+++|+||+ ..+++++..++.|++||+.++.. ...+..+........+.+++|+|++..+++....
T Consensus 31 ~~~~~~~~i~~spDg---~~l~v~~~~~~~v~v~D~~t~~~-----~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~ 102 (337)
T d1pbyb_ 31 DAGPTPMVPMVAPGG---RIAYATVNKSESLVKIDLVTGET-----LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESP 102 (337)
T ss_dssp TCTTCCCCEEECTTS---SEEEEEETTTTEEEEEETTTCCE-----EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEE
T ss_pred CCCCCccEEEECCCC---CEEEEEECCCCeEEEEECCCCcE-----EEEEecCCCcccccceeeEEEcCCCcEEEEeecC
Confidence 445667899999985 34446667789999999986521 1111111111001112369999966544433311
Q ss_pred ----------ccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC-------
Q 017601 170 ----------FSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG------- 230 (369)
Q Consensus 170 ----------~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~------- 230 (369)
.+..+.+||... ..+.+.....+..+.+. +++..+++++. .+.+||..+++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s------~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~ 174 (337)
T d1pbyb_ 103 VRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWA------RDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEEC------TTSSCEEEESS--SEEEEETTTTEEEEEECSTT
T ss_pred CcceeeeccccccceeeccccCCeEEEeccccCCceEEEEc------CCCCEEEEEcC--CcceeeeecCcEEEEeecCC
Confidence 346778888753 22333222233333332 45555655543 3455665543100
Q ss_pred -------------------------------------------------------ceee-eeeccCCCcEEEEEECCCC-
Q 017601 231 -------------------------------------------------------GCLH-RICGSVGDILYAVCSSSTG- 253 (369)
Q Consensus 231 -------------------------------------------------------~~~~-~~~~~~~~~v~~v~~sp~g- 253 (369)
.... .+..+ ...+..++++|++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 253 (337)
T d1pbyb_ 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-DVFYFSTAVNPAKT 253 (337)
T ss_dssp TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECTTSS
T ss_pred ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC-CcceEEEEecccce
Confidence 1111 11111 3456677788888
Q ss_pred cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 254 NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 254 ~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+++.+ ++.|++||+++++.+..+. + ...+.+++|+| ||++|++++.|++|++||.++.+.+..+.-
T Consensus 254 ~~~~~--~~~i~v~d~~~~~~~~~~~-~-~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 254 RAFGA--YNVLESFDLEKNASIKRVP-L-PHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEEE--ESEEEEEETTTTEEEEEEE-C-SSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEc--cccEEEEECCCCcEEEEEc-C-CCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 55544 5899999999999988875 4 56789999999 999999999999999999999998888853
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.64 E-value=1.3e-15 Score=143.68 Aligned_cols=142 Identities=11% Similarity=-0.037 Sum_probs=114.7
Q ss_pred EEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceee-----eecccccc
Q 017601 210 MLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL-----SRWVHCSK 283 (369)
Q Consensus 210 lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~-----~~~~~h~~ 283 (369)
+++.++|++|.|||++++ +++.++..+ ..+..++||||| ++++++.|++|++||+.+++.. ....+| .
T Consensus 35 ~v~~~d~g~v~v~D~~t~---~v~~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~-~ 108 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTY---EIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA-R 108 (432)
T ss_dssp EEEETTTTEEEEEETTTC---CEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE-E
T ss_pred EEEEcCCCEEEEEECCCC---cEEEEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC-C
Confidence 466788999999999999 899999876 679999999999 9999999999999999886532 233456 6
Q ss_pred CceEEEEEcCCCCCEE-EEEECCCeEEEEECcCCceeEEEEcCCCe------------eeeeEcCCCCE-EEEEeCCCcE
Q 017601 284 YEITGLSFSSIDSNYI-YVQGVDYEVFCGQWRESSKVFAFRGDSNW------------LGFSKCSNRDV-LGGWSDSGSI 349 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l-~s~s~D~~i~vwd~~~~~~~~~~~g~~~~------------~~~~~~~d~~~-l~sgs~dg~I 349 (369)
..+.+..||| ||++| ++++.|++|++||..+++++..+.+|... ..+..++++.. +++.+.++.|
T Consensus 109 ~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i 187 (432)
T d1qksa2 109 SIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187 (432)
T ss_dssp EEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred CeEEecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence 7788888999 99986 67888999999999999998888765411 12333556665 5678888999
Q ss_pred EEEECCCCc
Q 017601 350 FVADVVAKE 358 (369)
Q Consensus 350 ~iWd~~~~~ 358 (369)
.+||..+.+
T Consensus 188 ~~~d~~~~~ 196 (432)
T d1qksa2 188 LLVDYTDLN 196 (432)
T ss_dssp EEEETTCSS
T ss_pred EEEEccCCC
Confidence 999988765
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.56 E-value=3.5e-13 Score=121.87 Aligned_cols=253 Identities=9% Similarity=0.026 Sum_probs=148.9
Q ss_pred eeeEEEEeecCCCCceEEEE--------EecCCcEEEEEecCCCCCCcccccccc-CCCCCCCCCCeeEEEECCCCceeE
Q 017601 94 EVQSIALAETDSSGYMVLGS--------VDSYGHLIVSKLDTSGKDVDRLTYSVL-PQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las--------~d~~g~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
.+..++||||+ ....+++ ++.++.|++||..+... .. ..... ....... ....+++|+|++...+
T Consensus 48 ~~~~~a~SpDg--~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~-~~--~~~~~~~~~~~~~-~~~~~~~~s~dg~~~~ 121 (355)
T d2bbkh_ 48 FLPNPVVADDG--SFIAHASTVFSRIARGERTDYVEVFDPVTLLP-TA--DIELPDAPRFLVG-TYPWMTSLTPDGKTLL 121 (355)
T ss_dssp SSCEEEECTTS--SCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EE--EEEETTCCCCCBS-CCGGGEEECTTSSEEE
T ss_pred CCCceEEcCCC--CEEEEEeCCCccccccCCCCEEEEEECCCCCE-EE--EEecCCcceeecC-CCCceEEEecCCCeeE
Confidence 34478999985 2222222 24578899999876521 00 00000 0011111 1123589999766555
Q ss_pred EEEecccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec----
Q 017601 165 AVARSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG---- 238 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~---- 238 (369)
+...+.+..+.+||.... ++.+. .+........ .....++.+.|++..++..... ..+..+..
T Consensus 122 v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~dg~~~~v~~~~~---~~~~~~~~~~~~ 190 (355)
T d2bbkh_ 122 FYQFSPAPAVGVVDLEGKAFKRMLD---VPDCYHIFPT-----APDTFFMHCRDGSLAKVAFGTE---GTPEITHTEVFH 190 (355)
T ss_dssp EEECSSSCEEEEEETTTTEEEEEEE---CCSEEEEEEE-----ETTEEEEEETTSCEEEEECCSS---SCCEEEECCCCS
T ss_pred EecCCCCceeeeeecCCCcEeeEEe---cCCcceEeec-----CCcceEEEcCCCCEEEEEecCC---CeEEEEeccccc
Confidence 544356788999998633 23222 1111111110 1235566677776666665544 12111111
Q ss_pred -cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceee--eeccccc---------cCceEEEEEcCCCCCEEEEEECC
Q 017601 239 -SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL--SRWVHCS---------KYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 239 -~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~--~~~~~h~---------~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
.....+....+++++ .++.++.++.+.+||+..++.. .....+. ......++++| ++..++..+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~ 269 (355)
T d2bbkh_ 191 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQ 269 (355)
T ss_dssp CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEE
T ss_pred ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEecc
Confidence 002345556777777 8899999999999999876432 2222220 12334688999 88887776544
Q ss_pred ----------CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCC--EEEEEeCCCcEEEEECCCCcchhhhcc
Q 017601 306 ----------YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRD--VLGGWSDSGSIFVADVVAKENEISALK 365 (369)
Q Consensus 306 ----------~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~--~l~sgs~dg~I~iWd~~~~~~~~~~l~ 365 (369)
..|.+||..+++.+..+..+.....+...+||+ ++++++.|+.|++||+++++. +..++
T Consensus 270 ~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~-~~~i~ 340 (355)
T d2bbkh_ 270 RDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE-LRSVN 340 (355)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE-EEEEC
T ss_pred CCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE-EEEEe
Confidence 379999999998888776443224555677887 567888899999999999974 44444
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=3e-12 Score=114.29 Aligned_cols=258 Identities=8% Similarity=-0.001 Sum_probs=152.2
Q ss_pred ccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 85 MLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 85 ~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
.++...|.+.|+.|+|+||+ ..+.++...++.|.+|++.......... ...... ....+++|+|++. .+
T Consensus 29 ~~~~~~~~~~v~~la~spDG---~~L~v~~~~d~~i~~~~i~~~~~~~~~~-~~~~~~------~~p~~l~~spDg~-~l 97 (333)
T d1ri6a_ 29 LTQVVDVPGQVQPMVVSPDK---RYLYVGVRPEFRVLAYRIAPDDGALTFA-AESALP------GSLTHISTDHQGQ-FV 97 (333)
T ss_dssp EEEEEECSSCCCCEEECTTS---SEEEEEETTTTEEEEEEECTTTCCEEEE-EEEECS------SCCSEEEECTTSS-EE
T ss_pred EEEEEcCCCCEeEEEEeCCC---CEEEEEECCCCeEEEEEEeCCCCcEEEe-eecccC------CCceEEEEcCCCC-EE
Confidence 34456788999999999995 2333555668999999998653211110 000000 0123699999655 45
Q ss_pred EEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceee--eeecc
Q 017601 165 AVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLH--RICGS 239 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~--~~~~~ 239 (369)
+++...+++|.+|+... .........+...+..+. +++++..++.++ .+..+.+|+........... .....
T Consensus 98 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~---~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (333)
T d1ri6a_ 98 FVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSAN---ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV 174 (333)
T ss_dssp EEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCE---ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS
T ss_pred eecccCCCceeeeccccccceecccccCCCccceEEE---eeecceeeeccccccceeeEEEeccCCcceeeeceeeeee
Confidence 55536788999997542 222222222222222111 235666666665 46789999987652111111 11111
Q ss_pred CCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCce----eeeec---c---ccccCceEEEEEcCCCCCEEEEE-ECCC
Q 017601 240 VGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWS----ALSRW---V---HCSKYEITGLSFSSIDSNYIYVQ-GVDY 306 (369)
Q Consensus 240 ~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~----~~~~~---~---~h~~~~v~~l~~sp~d~~~l~s~-s~D~ 306 (369)
.+.....++|++++ .+.+....+...+|+..... ....+ . .. ......+++++ ++++++.. ..++
T Consensus 175 ~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~-d~~~~~~~~~~~~ 252 (333)
T d1ri6a_ 175 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD-TRWAADIHITP-DGRHLYACDRTAS 252 (333)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS-CCCEEEEEECT-TSSEEEEEETTTT
T ss_pred cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCc-cccceeEEEec-ccCceeeecccCC
Confidence 14667889999999 44555667788888865421 11111 1 12 24567889999 98876655 4577
Q ss_pred eEEEEECcCCceeEEEEcC----CCeeeeeEcCCCCEEEEEe-CCCcEEEE--ECCCCc
Q 017601 307 EVFCGQWRESSKVFAFRGD----SNWLGFSKCSNRDVLGGWS-DSGSIFVA--DVVAKE 358 (369)
Q Consensus 307 ~i~vwd~~~~~~~~~~~g~----~~~~~~~~~~d~~~l~sgs-~dg~I~iW--d~~~~~ 358 (369)
.+.+|++..........++ ....++...+||++|+.++ .++.|.+| |.++|+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~ 311 (333)
T d1ri6a_ 253 LITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 311 (333)
T ss_dssp EEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred eEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCc
Confidence 9999998765433333221 1113466678999876654 56899999 556664
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.50 E-value=1.5e-11 Score=111.88 Aligned_cols=249 Identities=9% Similarity=-0.065 Sum_probs=148.3
Q ss_pred eEEEEeecCCCCceEEEEE----------ecCCcEEEEEecCCCCCCccccccccCCCCCC--CCCCeeEEEECCCCcee
Q 017601 96 QSIALAETDSSGYMVLGSV----------DSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGV--GEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~----------d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~p~~~~~ 163 (369)
..++|+||+ ..++.. ..++.|++||..+... ...+..+.... ....-.+++|++++...
T Consensus 69 ~~~a~SpDG----~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~ 139 (373)
T d2madh_ 69 PNPVAAHSG----SEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-----IADIELPDAPRFDVGPYSWMNANTPNNADL 139 (373)
T ss_pred ccEEEcCCC----CEEEEEeecCCcccccccceEEEEEECCCCcE-----EEEEecCCcceeEeccCCCcEEEEeCCCcE
Confidence 368999985 445443 3457799999986521 01111110000 00001257888866554
Q ss_pred EEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCC-cEEEEEcCCeEEEEeCCcccCCceeeeeecc---
Q 017601 164 AAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDLRMKENGGCLHRICGS--- 239 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~--- 239 (369)
++.....+..+.+|+...... ......+..+.+. +++. .+++.+.|+++.+||...+ .........
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s------~~g~~~~v~~~~dg~~~~~~~~~~---~~~~~~~~~~~~ 209 (373)
T d2madh_ 140 LFFQFAAGPAVGLVVQGGSSD-DQLLSSPTCYHIH------PGAPSTFYLLCAQGGLAKTDHAGG---AAGAGLVGAMLT 209 (373)
T ss_pred EEEEEcCCCceEEeeccCCeE-EEEeccceeEEEe------cCCCcEEEEEcCCCeEEEEEcCCc---eeeEEEeeeccc
Confidence 444334567788888653221 1222233333333 3344 4567788999999999877 443332211
Q ss_pred C--CCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceee--eeccccccC----------ceEEEEEcCCCCCE-------
Q 017601 240 V--GDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSAL--SRWVHCSKY----------EITGLSFSSIDSNY------- 298 (369)
Q Consensus 240 ~--~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~--~~~~~h~~~----------~v~~l~~sp~d~~~------- 298 (369)
. ......+.+++++.++..+.++.+.+|+..+.... ..+..+ .. ....++++| ++..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~ 287 (373)
T d2madh_ 210 AAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDAL-SGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSE 287 (373)
T ss_pred cCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccc-cCcEEeeeeccCcceeeEEec-CCCeEEEecCC
Confidence 0 12234456667666667778999999998875432 222222 11 223345555 4443
Q ss_pred ---EEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCC--EEEEEeCCCcEEEEECCCCcchhhhccc
Q 017601 299 ---IYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRD--VLGGWSDSGSIFVADVVAKENEISALKG 366 (369)
Q Consensus 299 ---l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~--~l~sgs~dg~I~iWd~~~~~~~~~~l~g 366 (369)
+++...++++.+||..+++.+..+........+..++||+ ++++++.|++|++||+++++. +..+++
T Consensus 288 ~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~-~~~~~~ 359 (373)
T d2madh_ 288 QSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ-DQSTVE 359 (373)
T ss_pred CceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE-EEEECC
Confidence 4456677889999999998888876544335566688988 457899999999999999974 455543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.47 E-value=1.9e-12 Score=115.83 Aligned_cols=240 Identities=10% Similarity=-0.013 Sum_probs=142.0
Q ss_pred EEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEE
Q 017601 98 IALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVY 177 (369)
Q Consensus 98 l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lw 177 (369)
++|+++ ...+++++.+++|.+||+.+.. .+ ....+ ++. .+..+++|+|++..+++++ +.++.|.+|
T Consensus 2 ~a~~~~----~~~l~~~~~~~~v~v~D~~t~~-~~--~t~~~-~~~-----~~p~~l~~spDG~~l~v~~-~~~~~v~~~ 67 (346)
T d1jmxb_ 2 PALKAG----HEYMIVTNYPNNLHVVDVASDT-VY--KSCVM-PDK-----FGPGTAMMAPDNRTAYVLN-NHYGDIYGI 67 (346)
T ss_dssp CCCCTT----CEEEEEEETTTEEEEEETTTTE-EE--EEEEC-SSC-----CSSCEEEECTTSSEEEEEE-TTTTEEEEE
T ss_pred ccCCCC----CcEEEEEcCCCEEEEEECCCCC-EE--EEEEc-CCC-----CCcceEEECCCCCEEEEEE-CCCCcEEEE
Confidence 466776 4789999999999999998651 11 11111 111 1223799999666555555 889999999
Q ss_pred eCCc--ceEEEEeeeCCcce-eeeccCCCCCCCCcEEEEE------------cCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 178 DQDI--HLRTLRTLWYPSSL-NFVQNLSPVNGGPNMLAVT------------EGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 178 d~~~--~~~~~~~~~~~~~v-~~~~~~~~~~~~~~lla~s------------~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
|... .+..+......... .......+++|+..+++++ .+..+.+||..+++....+...... .
T Consensus 68 d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~ 145 (346)
T d1jmxb_ 68 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--R 145 (346)
T ss_dssp ETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--S
T ss_pred eCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc--C
Confidence 9864 33333222111111 1111112346676665543 4778999999887433333333333 5
Q ss_pred cEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCC--------------------------
Q 017601 243 ILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDS-------------------------- 296 (369)
Q Consensus 243 ~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~-------------------------- 296 (369)
.+..+.+++++.+++.+ ..+.+||+.+++.+..+..+ .....+.++| ++
T Consensus 146 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (346)
T d1jmxb_ 146 QVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLR--NWNRKGYSAP-DVLYFWPHQSPRHEFSMLYTIARFKDDK 220 (346)
T ss_dssp SCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECST--TCCCTTBCCC-BCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred ceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEEecC--CCccceEEec-cccEEEEEecCCCceEeeeeeeeeccCc
Confidence 66777888888444443 45899999998888776644 2233334444 33
Q ss_pred CEEEEEECCCeEEEEECcCCceeEE-EEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 297 NYIYVQGVDYEVFCGQWRESSKVFA-FRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 297 ~~l~s~s~D~~i~vwd~~~~~~~~~-~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
..++++..+..+.+||+.++..... +.++.. .......+++..++.+.. +.|++||..+++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~ 284 (346)
T d1jmxb_ 221 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKL 284 (346)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEE
T ss_pred eeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcE
Confidence 2334455566788888887665443 334442 122333456666666554 5799999998864
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.40 E-value=1.5e-10 Score=105.10 Aligned_cols=209 Identities=8% Similarity=-0.111 Sum_probs=129.3
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEE
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
..+.|++++ +...++..+....+.+|+...... .... . ...++.|+|++...+++. +.|+++.
T Consensus 128 ~~~~~s~dg--~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~----~-----~~~~~~~s~~g~~~~v~~-~~dg~~~ 190 (373)
T d2madh_ 128 WMNANTPNN--ADLLFFQFAAGPAVGLVVQGGSSD-----DQLL----S-----SPTCYHIHPGAPSTFYLL-CAQGGLA 190 (373)
T ss_pred CcEEEEeCC--CcEEEEEEcCCCceEEeeccCCeE-----EEEe----c-----cceeEEEecCCCcEEEEE-cCCCeEE
Confidence 457788874 344555556666777777654310 0000 0 012688999777777776 8999999
Q ss_pred EEeCCcc--eEEEEeeeCCc-ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC---------CCc
Q 017601 176 VYDQDIH--LRTLRTLWYPS-SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV---------GDI 243 (369)
Q Consensus 176 lwd~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~---------~~~ 243 (369)
+||.... .+......... ...+.......+ +..++..+.++++.+|+.....- ..+....... ...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 268 (373)
T d2madh_ 191 KTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-SGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGGRKADTWRPGG 268 (373)
T ss_pred EEEcCCceeeEEEeeeccccCccceeeeEEECC-CceEEEecCCceEEEEEcCCCeE-EEEEeeccccCcEEeeeeccCc
Confidence 9987532 22221111111 000100001112 45677788899999999876520 0111111110 122
Q ss_pred EEEEEECCCC-----------cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCE--EEEEECCCeEEE
Q 017601 244 LYAVCSSSTG-----------NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNY--IYVQGVDYEVFC 310 (369)
Q Consensus 244 v~~v~~sp~g-----------~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~--l~s~s~D~~i~v 310 (369)
...++++|++ .+++...++.+.+||..+++.+..+. + ...+.+++|+| ||+. +++++.|++|++
T Consensus 269 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~-~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v 345 (373)
T d2madh_ 269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-L-GHDVDAISVAQ-DGGPDLYALSAGTEVLHI 345 (373)
T ss_pred ceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-C-CCCeeEEEECC-CCCEEEEEEeCCCCeEEE
Confidence 3345556555 33455667889999999999888776 3 46789999999 9984 467899999999
Q ss_pred EECcCCceeEEEEcCC
Q 017601 311 GQWRESSKVFAFRGDS 326 (369)
Q Consensus 311 wd~~~~~~~~~~~g~~ 326 (369)
||+.+++.++.+.++.
T Consensus 346 ~D~~tg~~~~~~~~~g 361 (373)
T d2madh_ 346 YDAGAGDQDQSTVELG 361 (373)
T ss_pred EECCCCCEEEEECCCC
Confidence 9999999999997654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=1.3e-10 Score=103.25 Aligned_cols=235 Identities=14% Similarity=0.076 Sum_probs=136.8
Q ss_pred ceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEE
Q 017601 108 YMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRT 185 (369)
Q Consensus 108 ~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~ 185 (369)
+.+.++...++.|++|+++.... +.. .....+. +.+.+++|+|++..+++++ ..|+.|++|++.. ....
T Consensus 4 ~~v~v~~~~~~~I~v~~~~~~~~-l~~--~~~~~~~-----~~v~~la~spDG~~L~v~~-~~d~~i~~~~i~~~~~~~~ 74 (333)
T d1ri6a_ 4 QTVYIASPESQQIHVWNLNHEGA-LTL--TQVVDVP-----GQVQPMVVSPDKRYLYVGV-RPEFRVLAYRIAPDDGALT 74 (333)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSC-EEE--EEEEECS-----SCCCCEEECTTSSEEEEEE-TTTTEEEEEEECTTTCCEE
T ss_pred eEEEEECCCCCcEEEEEEcCCCC-eEE--EEEEcCC-----CCEeEEEEeCCCCEEEEEE-CCCCeEEEEEEeCCCCcEE
Confidence 45667777889999999985421 110 1111111 1234799999765554555 7899999998642 2211
Q ss_pred E-EeeeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe-CC
Q 017601 186 L-RTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG-AD 261 (369)
Q Consensus 186 ~-~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs-~D 261 (369)
+ ...........+. ++||+..+++++. ++++.+|+..............+ ...+.++.|+|++ .+++++ .+
T Consensus 75 ~~~~~~~~~~p~~l~---~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~v~~s~d~~~~~~~~~~~ 149 (333)
T d1ri6a_ 75 FAAESALPGSLTHIS---TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--LDGCHSANISPDNRTLWVPALKQ 149 (333)
T ss_dssp EEEEEECSSCCSEEE---ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC--CTTBCCCEECTTSSEEEEEEGGG
T ss_pred EeeecccCCCceEEE---EcCCCCEEeecccCCCceeeeccccccceecccccCC--CccceEEEeeecceeeecccccc
Confidence 1 1111222222222 2356777777764 77899998776521111222222 3678899999999 555555 56
Q ss_pred CcEEEEeCCCceeeee------ccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCc----eeEEEEc----CC
Q 017601 262 RTVTIYDPRRWSALSR------WVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESS----KVFAFRG----DS 326 (369)
Q Consensus 262 ~~v~vwD~~~~~~~~~------~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~----~~~~~~g----~~ 326 (369)
..|.+|+......... .... ......++|++ ++.+++... ..+...+|++.... ....... ..
T Consensus 150 ~~i~~~~~~~~~~~~~~~~~~~~~~~-g~~p~~i~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 227 (333)
T d1ri6a_ 150 DRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS 227 (333)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred ceeeEEEeccCCcceeeeceeeeeec-CCCccEEEEec-cceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCC
Confidence 6799999876432221 1122 34568899999 888876655 45688888876532 1112211 01
Q ss_pred --Ce-eeeeEcCCCCEEE-EEeCCCcEEEEECCCCc
Q 017601 327 --NW-LGFSKCSNRDVLG-GWSDSGSIFVADVVAKE 358 (369)
Q Consensus 327 --~~-~~~~~~~d~~~l~-sgs~dg~I~iWd~~~~~ 358 (369)
.+ ..+..++|+++++ ++..++.+.+|++....
T Consensus 228 ~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~ 263 (333)
T d1ri6a_ 228 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG 263 (333)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred ccccceeEEEecccCceeeecccCCeEEEEEEcCCC
Confidence 11 1222355777544 55667899999886543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.21 E-value=1e-10 Score=105.26 Aligned_cols=216 Identities=9% Similarity=-0.015 Sum_probs=122.0
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
.....++|++++ ....++..+....+.+|+...... + ..............+....+++++++..+++.. ..++
T Consensus 106 ~~~~~~~~s~dg--~~~~v~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~-~~~~ 179 (355)
T d2bbkh_ 106 TYPWMTSLTPDG--KTLLFYQFSPAPAVGVVDLEGKAF-K--RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAF-GTEG 179 (355)
T ss_dssp CCGGGEEECTTS--SEEEEEECSSSCEEEEEETTTTEE-E--EEEECCSEEEEEEEETTEEEEEETTSCEEEEEC-CSSS
T ss_pred CCCceEEEecCC--CeeEEecCCCCceeeeeecCCCcE-e--eEEecCCcceEeecCCcceEEEcCCCCEEEEEe-cCCC
Confidence 445678999985 344455556667888888875411 0 001100000000000011245555333222222 3344
Q ss_pred eEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC---------CCc
Q 017601 173 SIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV---------GDI 243 (369)
Q Consensus 173 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~---------~~~ 243 (369)
.+.+++........ ........+. +++..++.++.++.+.+||+..+. ...+.....+. ...
T Consensus 180 ~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~ 250 (355)
T d2bbkh_ 180 TPEITHTEVFHPED--EFLINHPAYS------QKAGRLVWPTYTGKIHQIDLSSGD-AKFLPAVEALTEAERADGWRPGG 250 (355)
T ss_dssp CCEEEECCCCSCTT--SCBCSCCEEE------TTTTEEEEEBTTSEEEEEECTTSS-CEECCCEESSCHHHHHTTEEECS
T ss_pred eEEEEeccccccee--cceeeecccc------CCCCeEEEecCCCeEEEEecCCCc-EEEEeccCCcccceEeeeeeccc
Confidence 44444332110000 0000111222 346688888999999999998762 11122121110 022
Q ss_pred EEEEEECCCC-cEEEEeCC----------CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCC--EEEEEECCCeEEE
Q 017601 244 LYAVCSSSTG-NIAVAGAD----------RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSN--YIYVQGVDYEVFC 310 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D----------~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~--~l~s~s~D~~i~v 310 (369)
...++++|++ .++..+.+ ..|.+||..+++.+.++..+ ..+.+++|+| ||+ ++++++.|++|++
T Consensus 251 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~--~~~~~~a~sp-DG~~~l~v~~~~d~~i~v 327 (355)
T d2bbkh_ 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQ-DEKPLLYALSTGDKTLYI 327 (355)
T ss_dssp SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECC-SSSCEEEEEETTTTEEEE
T ss_pred eEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC--CCEEEEEEcC-CCCeEEEEEECCCCEEEE
Confidence 3457899999 55544333 47999999999988887744 5689999999 997 4566778999999
Q ss_pred EECcCCceeEEEEcCC
Q 017601 311 GQWRESSKVFAFRGDS 326 (369)
Q Consensus 311 wd~~~~~~~~~~~g~~ 326 (369)
||+++++.++++.++.
T Consensus 328 ~D~~tg~~~~~i~~~G 343 (355)
T d2bbkh_ 328 HDAESGEELRSVNQLG 343 (355)
T ss_dssp EETTTCCEEEEECCCC
T ss_pred EECCCCCEEEEEeCcC
Confidence 9999999999997554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.18 E-value=4.6e-10 Score=102.17 Aligned_cols=242 Identities=7% Similarity=-0.106 Sum_probs=135.8
Q ss_pred EEEEeecCCCCceEEEEE----------ecCCcEEEEEecCCCCCCccccccccCCC-CCCCCCCeeEEEECCCCceeEE
Q 017601 97 SIALAETDSSGYMVLGSV----------DSYGHLIVSKLDTSGKDVDRLTYSVLPQD-CGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 97 ~l~~s~~~~~~~~~las~----------d~~g~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~~a 165 (369)
.++|+||+ ..++.. ..++.|++||..+... . ....+.... ...+...+ +++|+|++. .++
T Consensus 69 ~~a~spDg----~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~-~--~~i~~p~~~~~~~g~~p~-~~a~SpDGk-~l~ 139 (368)
T d1mdah_ 69 LAVAGHSG----SDFALASTSFARSAKGKRTDYVEVFDPVTFLP-I--ADIELPDAPRFSVGPRVH-IIGNCASSA-CLL 139 (368)
T ss_dssp EEEECTTS----SCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-E--EEEEETTSCSCCBSCCTT-SEEECTTSS-CEE
T ss_pred cceECCCC----CEEEEEcccCccccccccCCeEEEEECCCCcE-e--eeecCCccceecccCCcc-ceEECCCCC-EEE
Confidence 58899985 334332 3456799999876521 0 001111000 00111111 599999655 455
Q ss_pred EEecccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceee---eeeccC
Q 017601 166 VARSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLH---RICGSV 240 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~---~~~~~~ 240 (369)
++...++++.+||.... .+.+. .+....... .....+++.+.|+++.+|+........... .+..+
T Consensus 140 va~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~~~-----~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~- 210 (368)
T d1mdah_ 140 FFLFGSSAAAGLSVPGASDDQLTK---SASCFHIHP-----GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ- 210 (368)
T ss_dssp EEECSSSCEEEEEETTTEEEEEEE---CSSCCCCEE-----EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS-
T ss_pred EEeCCCCeEEEEECCCCcEeEEee---ccCcceEcc-----CCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccc-
Confidence 55356899999997643 23222 222211111 112456667788999899887652111110 01111
Q ss_pred CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee--eccccc---------cCceEEEEEcCCCCCEEEEEECC---
Q 017601 241 GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS--RWVHCS---------KYEITGLSFSSIDSNYIYVQGVD--- 305 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~--~~~~h~---------~~~v~~l~~sp~d~~~l~s~s~D--- 305 (369)
...+..+.+.+++ .+.+. .+.+.++|........ .+..+. ......++++| ++..++....+
T Consensus 211 ~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~ 287 (368)
T d1mdah_ 211 NCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSR 287 (368)
T ss_dssp CBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSS
T ss_pred ccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEecCCCc
Confidence 2344567788888 54443 3456666655443322 222110 12234578899 87776654322
Q ss_pred ------CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCC--EEEEEeCCCcEEEEECCCCcc
Q 017601 306 ------YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRD--VLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 306 ------~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~--~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.+|.+||..+++.+..+........+..++||+ ++++++.|+.|++||.++++.
T Consensus 288 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~ 349 (368)
T d1mdah_ 288 SCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp CTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred eeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 369999999998877765433234556678886 456888899999999999874
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.89 E-value=4.7e-08 Score=90.33 Aligned_cols=147 Identities=7% Similarity=-0.070 Sum_probs=102.2
Q ss_pred CCCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC---cEEEEeCCC-----------------c
Q 017601 205 NGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG---NIAVAGADR-----------------T 263 (369)
Q Consensus 205 ~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g---~lasgs~D~-----------------~ 263 (369)
+||.+++... .+++|.++|+++. ++.+.+.-.....+..++|+|+| +++..+.+. .
T Consensus 81 pDGr~lfV~d~~~~rVavIDl~t~---k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~ 157 (441)
T d1qnia2 81 YDGKYLFINDKANTRVARIRLDIM---KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM 157 (441)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTT---EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEECCCC---cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccce
Confidence 5665555544 5789999999998 66665553325789999999999 344444332 2
Q ss_pred EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC--------------------------------------
Q 017601 264 VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD-------------------------------------- 305 (369)
Q Consensus 264 v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D-------------------------------------- 305 (369)
+..+|..+.+...++... .....+.|+| +|+++++.+.+
T Consensus 158 ~~~iD~~t~~v~~qI~v~--~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v 234 (441)
T d1qnia2 158 FTAIDAETMDVAWQVIVD--GNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI 234 (441)
T ss_dssp EEEEETTTCSEEEEEEES--SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC
T ss_pred EEeecCccceeeEEEecC--CCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEe
Confidence 355888887777666543 4578899999 99998888754
Q ss_pred ---CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEE-EEEeCCCcEEEEECCCC
Q 017601 306 ---YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVL-GGWSDSGSIFVADVVAK 357 (369)
Q Consensus 306 ---~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l-~sgs~dg~I~iWd~~~~ 357 (369)
+.+.+++....+.++.+.....-.++..++||+++ +++..|++|.+||+++-
T Consensus 235 ~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~ 290 (441)
T d1qnia2 235 GDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL 290 (441)
T ss_dssp TTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred CCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence 23444545555566666543333567778899975 57788999999998754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.86 E-value=3.4e-08 Score=91.25 Aligned_cols=128 Identities=14% Similarity=-0.027 Sum_probs=81.8
Q ss_pred CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceee--------eecccc--cc
Q 017601 216 GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSAL--------SRWVHC--SK 283 (369)
Q Consensus 216 d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~--------~~~~~h--~~ 283 (369)
++.+.|++.... +.+..+... .....++++||| .++++..+++|.|||+++.... ..+.++ ..
T Consensus 237 ~~v~vvd~~~~~---~v~~~IPvg--ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~g 311 (441)
T d1qnia2 237 SKVPVVDGRGES---EFTRYIPVP--KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELG 311 (441)
T ss_dssp CCCCEEECSSSC---SSEEEECCB--SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCC
T ss_pred CCcEEEEcccCC---ceEEEEeCC--CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccc
Confidence 445566655544 555566544 556789999999 4567888999999998763221 111111 01
Q ss_pred CceEEEEEcCCCCCEEEEEECCCeEEEEECcC----------CceeEEE-----EcCCCe-eeeeEcCCCCEEEEE---e
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE----------SSKVFAF-----RGDSNW-LGFSKCSNRDVLGGW---S 344 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~----------~~~~~~~-----~g~~~~-~~~~~~~d~~~l~sg---s 344 (369)
-.....+|.+ +|..+.|.+.|..|..|++.. ...+..+ .||... ++....|||++|+++ |
T Consensus 312 lgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s 390 (441)
T d1qnia2 312 LGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFS 390 (441)
T ss_dssp SCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCC
T ss_pred cCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccc
Confidence 1234568999 999899999999999999852 1233333 355410 122235699999999 6
Q ss_pred CCCcE
Q 017601 345 DSGSI 349 (369)
Q Consensus 345 ~dg~I 349 (369)
.|+.+
T Consensus 391 ~dr~~ 395 (441)
T d1qnia2 391 KDRFL 395 (441)
T ss_dssp GGGSC
T ss_pred cccCc
Confidence 67543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.80 E-value=1.5e-08 Score=91.82 Aligned_cols=132 Identities=11% Similarity=-0.053 Sum_probs=96.2
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe----------CCCcEEEEeCCCceeeeeccccccC-
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG----------ADRTVTIYDPRRWSALSRWVHCSKY- 284 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs----------~D~~v~vwD~~~~~~~~~~~~h~~~- 284 (369)
..+.+||..++ +.+.++..+ .. ..++|+||| .|++.+ .|++|.+||..+++++..+..+ ..
T Consensus 46 ~~~~~~d~~~~---~~~~~~~~~-~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p-~~~ 118 (368)
T d1mdah_ 46 TENWVSCAGCG---VTLGHSLGA-FL--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP-DAP 118 (368)
T ss_dssp EEEEEEETTTT---EEEEEEEEC-TT--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET-TSC
T ss_pred ceEEEEeCCCC---cEEEEEeCC-CC--CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCC-ccc
Confidence 34667798888 777777655 22 358999999 777654 4788999999999988877644 22
Q ss_pred ------ceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 285 ------EITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 285 ------~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
....++||| ||++|+.+. .++.+.+||+.+++....+..+.. ..........++..+.||.+.+|++...
T Consensus 119 ~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~Dg~~~~~~~~~~ 195 (368)
T d1mdah_ 119 RFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC--FHIHPGAAATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp SCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC--CCCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred eecccCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc--ceEccCCCceEEEEcCCCCEEEEEecCC
Confidence 234689999 999998776 578999999999998888876551 1111123456777788888888887655
Q ss_pred c
Q 017601 358 E 358 (369)
Q Consensus 358 ~ 358 (369)
.
T Consensus 196 ~ 196 (368)
T d1mdah_ 196 P 196 (368)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.80 E-value=1.6e-08 Score=94.78 Aligned_cols=138 Identities=9% Similarity=0.036 Sum_probs=98.8
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccC----CCcEEEEEECCCC-cEEEEeC---------CCcEEEEeCCCce
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV----GDILYAVCSSSTG-NIAVAGA---------DRTVTIYDPRRWS 273 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~----~~~v~~v~~sp~g-~lasgs~---------D~~v~vwD~~~~~ 273 (369)
+.++. .+|+.+.+||+.++ +....+..+. ...|.++.||||| +|+.++. ++.+.|||+.+++
T Consensus 28 ~~~~~-~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~ 103 (470)
T d2bgra1 28 HEYLY-KQENNILVFNAEYG---NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ 103 (470)
T ss_dssp SEEEE-ESSSCEEEEETTTC---CEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred CEEEE-EcCCcEEEEECCCC---CEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc
Confidence 45555 45788999999998 4433333221 3679999999999 8887753 5678899999887
Q ss_pred eeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc---------CCC----------eeeeeEc
Q 017601 274 ALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG---------DSN----------WLGFSKC 334 (369)
Q Consensus 274 ~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g---------~~~----------~~~~~~~ 334 (369)
+..+..| ...+..+.||| ||+.+|.. .|+.+++|+..+++..+.... ... ..++..+
T Consensus 104 -~~~l~~~-~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS 179 (470)
T d2bgra1 104 -LITEERI-PNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS 179 (470)
T ss_dssp -ECCSSCC-CTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred -ccccccC-Ccccccccccc-CcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEEC
Confidence 4567888 88999999999 99999985 578999999988765543321 110 0223457
Q ss_pred CCCCEEEEEeCCCc-EEEEE
Q 017601 335 SNRDVLGGWSDSGS-IFVAD 353 (369)
Q Consensus 335 ~d~~~l~sgs~dg~-I~iWd 353 (369)
|||+.|+....|.+ +..|.
T Consensus 180 PDGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 180 PNGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp TTSSEEEEEEEECTTCCEEE
T ss_pred CCCCccceeEecCCcCceEE
Confidence 89999998876643 54444
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.74 E-value=5.1e-06 Score=75.01 Aligned_cols=151 Identities=12% Similarity=0.045 Sum_probs=89.9
Q ss_pred CCCCCCcEEEEEc-CCeEEEEeCCcccCCceeeeee-ccCCCcEEEEEECCCC-cE-EEEeCCCcEEEEeCCCceee--e
Q 017601 203 PVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHRIC-GSVGDILYAVCSSSTG-NI-AVAGADRTVTIYDPRRWSAL--S 276 (369)
Q Consensus 203 ~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~~~~~~--~ 276 (369)
++||+.+++++.. ...|.+|+............+. ...+.....++|+|++ ++ ++.-.+++|.+||+...+.. .
T Consensus 152 ~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~ 231 (365)
T d1jofa_ 152 FDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY 231 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEE
Confidence 4567777776653 4578888765431111222222 1114678899999999 44 55667899999998654321 1
Q ss_pred e---cc--------------ccccCceEEEEEcCCCCCEEEEEEC-C-----CeEEEEECcCC-ceeEE---EE----c-
Q 017601 277 R---WV--------------HCSKYEITGLSFSSIDSNYIYVQGV-D-----YEVFCGQWRES-SKVFA---FR----G- 324 (369)
Q Consensus 277 ~---~~--------------~h~~~~v~~l~~sp~d~~~l~s~s~-D-----~~i~vwd~~~~-~~~~~---~~----g- 324 (369)
. +. .+ ......+.++| ||++|+++.. + ..|..|++... ..... .. |
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~sp-dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~ 309 (365)
T d1jofa_ 232 THHSFPLIPPGIPDRDPETGKG-LYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG 309 (365)
T ss_dssp EEEEEESSCTTCCCBCTTTSSB-SEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT
T ss_pred Eeeeeccccccccccccccccc-cCCccceEECC-CCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCC
Confidence 1 10 11 22356789999 9999887643 2 23777777653 22111 11 1
Q ss_pred CCCeeeeeEcC-CCCEEEEE-eCCCcEEEEECCCC
Q 017601 325 DSNWLGFSKCS-NRDVLGGW-SDSGSIFVADVVAK 357 (369)
Q Consensus 325 ~~~~~~~~~~~-d~~~l~sg-s~dg~I~iWd~~~~ 357 (369)
+. .++..++ +|++|+.+ ..++.|.+|++...
T Consensus 310 ~p--~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 310 HS--NAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TC--CCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred Cc--cEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 22 3455566 78876555 56799999987543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.65 E-value=4.5e-05 Score=65.70 Aligned_cols=190 Identities=13% Similarity=0.148 Sum_probs=120.3
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEe--eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN 229 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~ 229 (369)
++++.+.....+++..+.+..|..++... ....+.. ...+..+.. ++++..+++....+.+.++|.. +
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~av------d~~G~i~v~~~~~~~~~~~~~~-g-- 144 (279)
T d1q7fa_ 74 RVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTV------DNKGRIIVVECKVMRVIIFDQN-G-- 144 (279)
T ss_dssp EEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEE------CTTSCEEEEETTTTEEEEECTT-S--
T ss_pred cccccccccccceeccCCccccccccccccceeecCCCcccccceecc------ccCCcEEEEeeccceeeEeccC-C--
Confidence 56666655556665546677888887653 2332211 111222222 2334445554556677788754 2
Q ss_pred Cceeeeeecc-CCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc--ccccCceEEEEEcCCCCCEEEEEEC-
Q 017601 230 GGCLHRICGS-VGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV--HCSKYEITGLSFSSIDSNYIYVQGV- 304 (369)
Q Consensus 230 ~~~~~~~~~~-~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~--~h~~~~v~~l~~sp~d~~~l~s~s~- 304 (369)
+.+..+... .......+++.+++ .+++....+.|++||. +++.+.++. +. .....+|++.| +|+++++-+.
T Consensus 145 -~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~-~~~P~giavD~-~G~i~Vad~~~ 220 (279)
T d1q7fa_ 145 -NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGI-TNYPIGVGINS-NGEILIADNHN 220 (279)
T ss_dssp -CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTT-SCSEEEEEECT-TCCEEEEECSS
T ss_pred -ceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeeccccc-ccCCccccccc-CCeEEEEECCC
Confidence 455555321 13667889999999 7788888899999996 466666653 34 45678999999 9998877654
Q ss_pred CCeEEEEECcCCceeEEEEcCC---CeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 305 DYEVFCGQWRESSKVFAFRGDS---NWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 305 D~~i~vwd~~~~~~~~~~~g~~---~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+..|.+|+ ..++.+..+.... ...++...+||.+++ .+.++.|++|.....
T Consensus 221 ~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 221 NFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp SCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred CcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence 45799998 4577777775332 113444456876555 567899999998764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.57 E-value=1.6e-07 Score=87.74 Aligned_cols=146 Identities=12% Similarity=0.034 Sum_probs=95.1
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeee-----CCcceeeeccCCCCCCCCcEEEEEc---------CCe
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLW-----YPSSLNFVQNLSPVNGGPNMLAVTE---------GCQ 218 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~lla~s~---------d~~ 218 (369)
.+.|.++ +.++. ..++.+.+||............ +...+.... ++||+..|+.+++ ++.
T Consensus 21 ~~~W~~d-~~~~~---~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~---~SpDg~~i~~~~~~~~~~r~s~~~~ 93 (470)
T d2bgra1 21 SLRWISD-HEYLY---KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS---ISPDGQFILLEYNYVKQWRHSYTAS 93 (470)
T ss_dssp CCEECSS-SEEEE---ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEE---ECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred CCEeCCC-CEEEE---EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeE---ECCCCCEEEEEECCcceeeeccCce
Confidence 4778884 44443 3478899999864332211111 112222222 4578888887653 467
Q ss_pred EEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccc---------------
Q 017601 219 LTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCS--------------- 282 (369)
Q Consensus 219 v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~--------------- 282 (369)
+.|||+.++ + +..+..+ ...+..+.||||| .||.. .++.+.+|+..+++.......+.
T Consensus 94 ~~l~d~~~~---~-~~~l~~~-~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~ 167 (470)
T d2bgra1 94 YDIYDLNKR---Q-LITEERI-PNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (470)
T ss_dssp EEEEETTTT---E-ECCSSCC-CTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEEECCCC---c-ccccccC-CccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeee
Confidence 899999987 4 3344443 4789999999999 88875 47789999999887655433220
Q ss_pred --cCceEEEEEcCCCCCEEEEEECCCe-EEEEE
Q 017601 283 --KYEITGLSFSSIDSNYIYVQGVDYE-VFCGQ 312 (369)
Q Consensus 283 --~~~v~~l~~sp~d~~~l~s~s~D~~-i~vwd 312 (369)
.+....+.||| ||++|+....|.+ +..|+
T Consensus 168 ~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 168 EVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp HTSSSSBCEEECT-TSSEEEEEEEECTTCCEEE
T ss_pred eecCCccccEECC-CCCccceeEecCCcCceEE
Confidence 12345688999 9999999887654 55444
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.53 E-value=1.4e-05 Score=68.34 Aligned_cols=230 Identities=11% Similarity=0.044 Sum_probs=127.6
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEE
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
.+|++++++ ...++.....+.+..++....... ........ .-.++++++++ .++++. ...+.++
T Consensus 17 ~~vavd~dG---~i~v~~~~~~~~i~~~~~~~~~~~----~~~~~~~~------~p~gvav~~~g-~i~v~d-~~~~~i~ 81 (260)
T d1rwia_ 17 SGVAVDSAG---NVYVTSEGMYGRVVKLATGSTGTT----VLPFNGLY------QPQGLAVDGAG-TVYVTD-FNNRVVT 81 (260)
T ss_dssp EEEEECTTC---CEEEEECSSSCEEEEEC----CEE----ECCCCSCC------SCCCEEECTTC-CEEEEE-TTTEEEE
T ss_pred CEEEEcCCC---CEEEEEcCCCCEEEEEcCCCceEE----EeccCCcc------CceEEEEcCCC-CEEEee-eeeceee
Confidence 578887763 345555556666666555433110 00011000 01268999854 455544 6777787
Q ss_pred EEeCCcceEEEEe--eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC
Q 017601 176 VYDQDIHLRTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG 253 (369)
Q Consensus 176 lwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g 253 (369)
+++.+........ ...+..+.+ ++++..+++-..+..+..++..... ........ ....+.++++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~p~~iav------d~~g~i~v~d~~~~~~~~~~~~~~~--~~~~~~~~--~~~p~~i~~~~~g 151 (260)
T d1rwia_ 82 LAAGSNNQTVLPFDGLNYPEGLAV------DTQGAVYVADRGNNRVVKLAAGSKT--QTVLPFTG--LNDPDGVAVDNSG 151 (260)
T ss_dssp ECTTCSCCEECCCCSCCSEEEEEE------CTTCCEEEEEGGGTEEEEECTTCSS--CEECCCCS--CCSCCEEEECTTC
T ss_pred eeeeccceeeeeeeeeeecccccc------cccceeEeeccccccccccccccce--eeeeeecc--cCCcceeeecCCC
Confidence 7765433222211 122333332 2344444444456667777765431 12221222 2456789999999
Q ss_pred -cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC--CCeee
Q 017601 254 -NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD--SNWLG 330 (369)
Q Consensus 254 -~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~--~~~~~ 330 (369)
.+++...++.|..+|............. -.....|++.+ +++++++....+.|..++...... ..+... ..-.+
T Consensus 152 ~~~v~~~~~~~i~~~d~~~~~~~~~~~~~-~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~ 228 (260)
T d1rwia_ 152 NVYVTDTDNNRVVKLEAESNNQVVLPFTD-ITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLA 228 (260)
T ss_dssp CEEEEEGGGTEEEEECTTTCCEEECCCSS-CCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEE
T ss_pred CEeeeccccccccccccccceeeeeeccc-cCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEE
Confidence 7777778888999998754433332344 45578999999 999888888888888887654322 222111 11134
Q ss_pred eeEcCCCCEEEEEeCCCcEEEEE
Q 017601 331 FSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 331 ~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
+...++|.++++-..++.|+..+
T Consensus 229 i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 229 VAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp EEECTTCCEEEEEGGGTEEEEEC
T ss_pred EEEeCCCCEEEEECCCCEEEEEe
Confidence 44455777777766666665544
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.31 E-value=0.00031 Score=62.83 Aligned_cols=74 Identities=7% Similarity=-0.075 Sum_probs=51.8
Q ss_pred CcEEEEEECCCC-cEEEEe-CCCcEEEEeCCC-ceee--eec--cccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEEC
Q 017601 242 DILYAVCSSSTG-NIAVAG-ADRTVTIYDPRR-WSAL--SRW--VHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQW 313 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs-~D~~v~vwD~~~-~~~~--~~~--~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~ 313 (369)
..+.++.|+|+| ++++++ ....|.+|+... +... ... ... ......+.|+| ++++++... .+++|.+||+
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~-g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~ 222 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP-GDHPRWVAMHP-TGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST-TCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC-CCceEEEEECC-CCceEEEeccCCCEEEEEEe
Confidence 457899999999 666554 355788887654 3221 121 123 45689999999 999876655 5889999999
Q ss_pred cCCc
Q 017601 314 RESS 317 (369)
Q Consensus 314 ~~~~ 317 (369)
..+.
T Consensus 223 ~~~~ 226 (365)
T d1jofa_ 223 DPAT 226 (365)
T ss_dssp CTTT
T ss_pred cCCC
Confidence 7653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.31 E-value=3.6e-05 Score=65.60 Aligned_cols=191 Identities=8% Similarity=-0.000 Sum_probs=113.1
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEee---eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTL---WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN 229 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~ 229 (369)
++++++++. ++++..+..+.+..++.+......... ..|..+.+. +++..+++-...+.+++++....
T Consensus 18 ~vavd~dG~-i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~------~~g~i~v~d~~~~~i~~~~~~~~-- 88 (260)
T d1rwia_ 18 GVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD------GAGTVYVTDFNNRVVTLAAGSNN-- 88 (260)
T ss_dssp EEEECTTCC-EEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEEC------TTCCEEEEETTTEEEEECTTCSC--
T ss_pred EEEEcCCCC-EEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEc------CCCCEEEeeeeeceeeeeeeccc--
Confidence 799998554 445443566777777765443333221 234445443 34544444444556666654443
Q ss_pred CceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 230 GGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 230 ~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
..+...... ...+++++.+++ ++++-.....+..++............- .....+++++| +++++++...++.|
T Consensus 89 -~~~~~~~~~--~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~i~~~~-~g~~~v~~~~~~~i 163 (260)
T d1rwia_ 89 -QTVLPFDGL--NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDN-SGNVYVTDTDNNRV 163 (260)
T ss_dssp -CEECCCCSC--CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS-CCSCCEEEECT-TCCEEEEEGGGTEE
T ss_pred -eeeeeeeee--eecccccccccceeEeeccccccccccccccceeeeeeecc-cCCcceeeecC-CCCEeeeccccccc
Confidence 333333332 667899999999 6665566666777776553322221122 24567899999 99998888888999
Q ss_pred EEEECcCCceeEEEEcC-CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 309 FCGQWRESSKVFAFRGD-SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 309 ~vwd~~~~~~~~~~~g~-~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
..+|............. ....++...++|.++++-...+.|..++....
T Consensus 164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred cccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence 99998764332211111 11134444567888888888888888876544
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=8.2e-05 Score=62.96 Aligned_cols=203 Identities=13% Similarity=-0.014 Sum_probs=100.5
Q ss_pred ccceeeEEEEeecCCCCceEEE-EEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 91 HRSEVQSIALAETDSSGYMVLG-SVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~la-s~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
+...+.+-+||||+ +.|| +.+..+.-.+|......... ..+... .+......|+|++..++... .
T Consensus 37 ~~~~~~sP~wSPDG----k~IAf~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~spdg~~i~~~~-~ 102 (269)
T d2hqsa1 37 SPQPLMSPAWSPDG----SKLAYVTFESGRSALVIQTLANGAV----RQVASF-----PRHNGAPAFSPDGSKLAFAL-S 102 (269)
T ss_dssp ESSCEEEEEECTTS----SEEEEEECTTSSCEEEEEETTTCCE----EEEECC-----SSCEEEEEECTTSSEEEEEE-C
T ss_pred CCCceeeeEECCCC----CEEEEEEeeccCcceeeeecccCce----eEEeee-----ecccccceecCCCCeeeEee-e
Confidence 34557788999995 4444 44444443333333221111 111111 11234688999766555544 4
Q ss_pred ccceEEEEe--CCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCC--eEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 170 FSKSIDVYD--QDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGC--QLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 170 ~d~~i~lwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~--~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
..+...++. ...... ............... .+++..++.++ .++ .+.+.++..+ .. ..+... ....
T Consensus 103 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~i~~~~~~~~---~~-~~~~~~-~~~~ 173 (269)
T d2hqsa1 103 KTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW---FPDSQNLAFTSDQAGRPQVYKVNINGG---AP-QRITWE-GSQN 173 (269)
T ss_dssp TTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE---CTTSSEEEEEECTTSSCEEEEEETTSS---CC-EECCCS-SSEE
T ss_pred cCCccceeecccccccc-eeeeecccccccccc---ccccccceecccccCCceEeeeecccc---cc-eeeecc-cccc
Confidence 443333332 221111 111111111111111 12233444443 344 4555566554 22 222222 3667
Q ss_pred EEEEECCCC-cEEE-EeCCCcEEEE--eCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC---CeEEEEECcCCc
Q 017601 245 YAVCSSSTG-NIAV-AGADRTVTIY--DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD---YEVFCGQWRESS 317 (369)
Q Consensus 245 ~~v~~sp~g-~las-gs~D~~v~vw--D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D---~~i~vwd~~~~~ 317 (369)
....|+|++ .++. ....+...+| |...+. ..+..+ ........||| ||+.|+-.+.. ..+.++++..+.
T Consensus 174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~-~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLSS-TFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF 249 (269)
T ss_dssp EEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--EEECCC-SSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred cccccccccceeEEEeecCCceeeeEeeccccc--ceEeec-CccccceEECC-CCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 778999999 5554 4444454554 444333 233334 45667889999 99998765543 468889987765
Q ss_pred eeE
Q 017601 318 KVF 320 (369)
Q Consensus 318 ~~~ 320 (369)
...
T Consensus 250 ~~~ 252 (269)
T d2hqsa1 250 KAR 252 (269)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.23 E-value=0.00024 Score=61.65 Aligned_cols=194 Identities=10% Similarity=-0.018 Sum_probs=120.4
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG 231 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~ 231 (369)
.+++++|++ .++++. ..+++|..||.+.....+.. .+....-+. +++++..+++...++.+..|+....+ .
T Consensus 31 e~iAv~pdG-~l~vt~-~~~~~I~~i~p~g~~~~~~~--~~~~~~gla---~~~dG~l~v~~~~~~~~~~~~~~~~~--~ 101 (302)
T d2p4oa1 31 ENLASAPDG-TIFVTN-HEVGEIVSITPDGNQQIHAT--VEGKVSGLA---FTSNGDLVATGWNADSIPVVSLVKSD--G 101 (302)
T ss_dssp EEEEECTTS-CEEEEE-TTTTEEEEECTTCCEEEEEE--CSSEEEEEE---ECTTSCEEEEEECTTSCEEEEEECTT--S
T ss_pred CCEEECCCC-CEEEEe-CCCCEEEEEeCCCCEEEEEc--CCCCcceEE---EcCCCCeEEEecCCceEEEEEecccc--c
Confidence 379999954 566666 78899999987654444322 222222222 33566666666677888888876442 2
Q ss_pred eeeeee-ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc----------ccccCceEEEEEcCCCCCEE
Q 017601 232 CLHRIC-GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV----------HCSKYEITGLSFSSIDSNYI 299 (369)
Q Consensus 232 ~~~~~~-~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~----------~h~~~~v~~l~~sp~d~~~l 299 (369)
....+. .......+.+++.++| .+++-+.++.+..+|...+.....+. .. ......+.+.. ..++
T Consensus 102 ~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ngi~~~~--~~l~ 178 (302)
T d2p4oa1 102 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV-FPAANGLKRFG--NFLY 178 (302)
T ss_dssp CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC-SCSEEEEEEET--TEEE
T ss_pred ceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCc-ccccccccccC--Ccee
Confidence 222222 1114678999999999 77888888899889987754321111 11 13355666654 3455
Q ss_pred EEEECCCeEEEEECcCCce---eEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 300 YVQGVDYEVFCGQWRESSK---VFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 300 ~s~s~D~~i~vwd~~~~~~---~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
++.+..+.|..++...... ...+.......++...++|.++++...++.|..++....
T Consensus 179 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~ 239 (302)
T d2p4oa1 179 VSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS 239 (302)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred eecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence 5666788998888866321 122222222245666679998888888999999976543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.19 E-value=0.00066 Score=58.72 Aligned_cols=194 Identities=14% Similarity=0.051 Sum_probs=110.9
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
...+.+++++|++++ .++++....+.++.++........ ..+... .......++++.++ ..++++. +
T Consensus 65 ~~~~~~~gla~~~dG----~l~v~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~n~i~~~~~-g~~~v~~-~ 131 (302)
T d2p4oa1 65 TVEGKVSGLAFTSNG----DLVATGWNADSIPVVSLVKSDGTV----ETLLTL---PDAIFLNGITPLSD-TQYLTAD-S 131 (302)
T ss_dssp ECSSEEEEEEECTTS----CEEEEEECTTSCEEEEEECTTSCE----EEEEEC---TTCSCEEEEEESSS-SEEEEEE-T
T ss_pred cCCCCcceEEEcCCC----CeEEEecCCceEEEEEecccccce----eecccc---CCccccceeEEccC-CCEEeec-c
Confidence 345788999999984 466666666778887776442111 111000 00112457899984 4556655 7
Q ss_pred ccceEEEEeCCcceEEEEeeeC----------CcceeeeccCCCCCCCC-cEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 170 FSKSIDVYDQDIHLRTLRTLWY----------PSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~-~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
.++.+..+|.......+..... ....+-+. .++. .+++.+..+.|..+|............+..
T Consensus 132 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~-----~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 206 (302)
T d2p4oa1 132 YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLK-----RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE 206 (302)
T ss_dssp TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEE-----EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE
T ss_pred ccccceeeeccCCcceeEecCCccceeeccCccccccccc-----ccCCceeeecCCCCeEEeccccccccccccccccC
Confidence 7788888886543322211110 00111111 1122 334445678888888765422122222323
Q ss_pred cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCce-eeeeccccccCceEEEEE---cCCCCCEEEEEECC
Q 017601 239 SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS-ALSRWVHCSKYEITGLSF---SSIDSNYIYVQGVD 305 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~-~~~~~~~h~~~~v~~l~~---sp~d~~~l~s~s~D 305 (369)
. .....++|+++| ++++...++.|..++..... .+...... -...++++| ++ |++.|+.++..
T Consensus 207 ~--~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~-~~~pt~vafg~~~~-D~~~Lyvtt~~ 274 (302)
T d2p4oa1 207 Q--TNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQG-VIGSTAVAFGQTEG-DCTAIYVVTNG 274 (302)
T ss_dssp S--CCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGT-CTTEEEEEECCSTT-TTTEEEEEECT
T ss_pred C--CCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCC-CCCceEEEEcCCCC-CCCEEEEECCC
Confidence 2 455679999999 66777778899999876432 23344444 456899999 66 88887765543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.14 E-value=0.00065 Score=59.32 Aligned_cols=116 Identities=6% Similarity=0.002 Sum_probs=78.0
Q ss_pred CcEEEEEECCCC-----cE-EEEeCCCcEEEEeCCCc-ee-----eeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 242 DILYAVCSSSTG-----NI-AVAGADRTVTIYDPRRW-SA-----LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 242 ~~v~~v~~sp~g-----~l-asgs~D~~v~vwD~~~~-~~-----~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
...+.++|+|++ .| ++-+..+.|..||+... .. ...+.+......-.+++.+ +|++.++....+.|.
T Consensus 172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~ 250 (314)
T d1pjxa_ 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIE 250 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEE
T ss_pred ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEEE
Confidence 445788998864 34 44567888988887542 22 2223322123456899999 999988888889999
Q ss_pred EEECcCCceeEEEEcCC-CeeeeeEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 017601 310 CGQWRESSKVFAFRGDS-NWLGFSKCSNRD-VLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 310 vwd~~~~~~~~~~~g~~-~~~~~~~~~d~~-~l~sgs~dg~I~iWd~~~~~ 358 (369)
+||.+.++....+.... ...++..-+|++ +.++.+.+|.|+..++....
T Consensus 251 ~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 99998877777665443 223344455776 56777888999988876543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=0.0016 Score=54.58 Aligned_cols=196 Identities=8% Similarity=-0.070 Sum_probs=101.7
Q ss_pred eEEEECCCCceeEEEEecccce--EEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCccc
Q 017601 152 SGLCFSPSQWSMAAVARSFSKS--IDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKE 228 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~--i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~ 228 (369)
..-+|||++. .||..+...+. +.+.+........... ......... +++++..++.... ++...++......
T Consensus 42 ~sP~wSPDGk-~IAf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~spdg~~i~~~~~~~~~~~~~~~~~~~ 116 (269)
T d2hqsa1 42 MSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQVAS-FPRHNGAPA---FSPDGSKLAFALSKTGSLNLYVMDLAS 116 (269)
T ss_dssp EEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCEEEEEC-CSSCEEEEE---ECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred eeeEECCCCC-EEEEEEeeccCcceeeeecccCceeEEee-eecccccce---ecCCCCeeeEeeecCCccceeeccccc
Confidence 3689999665 45544344443 4444544322211111 222222222 2356767776553 3333333322221
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcE--EEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTV--TIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v--~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
.......... .......+++++ .+++...++.. .+.++..+. ...+..+ ........|+| +++.++..+.
T Consensus 117 -~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~sp-dg~~~~~~~~ 190 (269)
T d2hqsa1 117 -GQIRQVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWE-GSQNQDADVSS-DGKFMVMVSS 190 (269)
T ss_dssp -CCEEECCCCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCS-SSEEEEEEECT-TSSEEEEEEE
T ss_pred -ccceeeeecc--ccccccccccccccceecccccCCceEeeeeccccc-ceeeecc-ccccccccccc-ccceeEEEee
Confidence 0222222232 444556678877 55555566654 444555442 3344445 56778889999 9998887766
Q ss_pred CC-e--EEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeC---CCcEEEEECCCCcc
Q 017601 305 DY-E--VFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSD---SGSIFVADVVAKEN 359 (369)
Q Consensus 305 D~-~--i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~---dg~I~iWd~~~~~~ 359 (369)
++ . +.+.|...+.. ..............+|||+.|+-.+. ...|++|++..+..
T Consensus 191 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 191 NGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp CSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred cCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 54 3 44445444433 22222221123345789998774443 35788999987653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.00 E-value=0.0014 Score=57.05 Aligned_cols=201 Identities=13% Similarity=0.120 Sum_probs=113.1
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc----
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF---- 170 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~---- 170 (369)
-..|+|.+++ .++...+....+...+.+.....+.. .... +..-.+...++|.+++ .+.++..+.
T Consensus 73 P~Gl~~~~dg----~~l~vad~~~~i~~~~~~g~~~~~~~--~~~~----g~~~~~pndl~~d~~G-~lyvtd~~~~~~~ 141 (314)
T d1pjxa_ 73 PAGCQCDRDA----NQLFVADMRLGLLVVQTDGTFEEIAK--KDSE----GRRMQGCNDCAFDYEG-NLWITAPAGEVAP 141 (314)
T ss_dssp EEEEEECSSS----SEEEEEETTTEEEEEETTSCEEECCS--BCTT----SCBCBCCCEEEECTTS-CEEEEECBCBCTT
T ss_pred ceeEEEeCCC----CEEEEEECCCeEEEEeCCCcEEEEEe--cccc----ccccCCCcEEEECCCC-CEEEecCccCccc
Confidence 4578998873 45666666666777665533111100 0000 0000112368999854 344432111
Q ss_pred ----------cceEEEEeCCcceE-EEEeeeCCcceeeeccCCCCCCC-C-cE-EEEEcCCeEEEEeCCcccCCceee--
Q 017601 171 ----------SKSIDVYDQDIHLR-TLRTLWYPSSLNFVQNLSPVNGG-P-NM-LAVTEGCQLTIWDLRMKENGGCLH-- 234 (369)
Q Consensus 171 ----------d~~i~lwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~-~-~l-la~s~d~~v~iwD~~~~~~~~~~~-- 234 (369)
.+.|..++.+.... .......+..+.+... .++ . .| ++-+..+.|..||+... ..+.
T Consensus 142 ~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d----~d~~~~~lyv~d~~~~~i~~~d~~~~---g~~~~~ 214 (314)
T d1pjxa_ 142 ADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHM----NDGRPYQLIVAETPTKKLWSYDIKGP---AKIENK 214 (314)
T ss_dssp SCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEEC----TTSCEEEEEEEETTTTEEEEEEEEET---TEEEEE
T ss_pred ccccceeccCCceEEEEeecCceeEeeCCcceeeeeEECCC----CCcceeEEEEEeecccceEEeeccCc---ccccee
Confidence 23444445432222 2222334455555542 111 1 23 33345778888887643 2221
Q ss_pred ----eeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCC-EEEEEECCCeE
Q 017601 235 ----RICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSN-YIYVQGVDYEV 308 (369)
Q Consensus 235 ----~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~-~l~s~s~D~~i 308 (369)
.+........-.+++.++| +.++....+.|.+||.+.++.+..+... ....++++|.| |++ ++++.+..++|
T Consensus 215 ~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p-~~~~t~~afg~-d~~~lyVt~~~~g~i 292 (314)
T d1pjxa_ 215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKP-QTKTIFVTEHENNAV 292 (314)
T ss_dssp EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECT-TSSEEEEEETTTTEE
T ss_pred eEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECC-CCCEEEEEEeC-CCCEEEEEECCCCcE
Confidence 1111101345679999999 5566667889999999888877777665 56789999999 887 45666777888
Q ss_pred EEEECcC
Q 017601 309 FCGQWRE 315 (369)
Q Consensus 309 ~vwd~~~ 315 (369)
...++..
T Consensus 293 ~~~~~~~ 299 (314)
T d1pjxa_ 293 WKFEWQR 299 (314)
T ss_dssp EEEECSS
T ss_pred EEEECCC
Confidence 8888754
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.99 E-value=0.00058 Score=58.38 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=96.1
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG 230 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~ 230 (369)
.++++.+++ .++++. ...+.+.+++.+. .+..+....+......+. .++++..+++....+.|++||.. +
T Consensus 117 ~~~avd~~G-~i~v~~-~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~---~d~~g~i~v~d~~~~~V~~~d~~-G--- 187 (279)
T d1q7fa_ 117 RGVTVDNKG-RIIVVE-CKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVV---VNDKQEIFISDNRAHCVKVFNYE-G--- 187 (279)
T ss_dssp EEEEECTTS-CEEEEE-TTTTEEEEECTTSCEEEEEECTTTCSSEEEEE---ECSSSEEEEEEGGGTEEEEEETT-C---
T ss_pred ceeccccCC-cEEEEe-eccceeeEeccCCceeecccccccccccceee---eccceeEEeeeccccceeeeecC-C---
Confidence 378888854 444444 5667788888753 333332222222222222 22445555555667899999975 3
Q ss_pred ceeeeeecc-CCCcEEEEEECCCC-cEEEEe-CCCcEEEEeCCCceeeeeccccc-cCceEEEEEcCCCCCEEEEEECCC
Q 017601 231 GCLHRICGS-VGDILYAVCSSSTG-NIAVAG-ADRTVTIYDPRRWSALSRWVHCS-KYEITGLSFSSIDSNYIYVQGVDY 306 (369)
Q Consensus 231 ~~~~~~~~~-~~~~v~~v~~sp~g-~lasgs-~D~~v~vwD~~~~~~~~~~~~h~-~~~v~~l~~sp~d~~~l~s~s~D~ 306 (369)
+.+..+... .......|++.++| .+++-. .++.|.+|| .+++.+.++.... ......|++.| ||.+++ ++.++
T Consensus 188 ~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~-dG~l~V-~~~n~ 264 (279)
T d1q7fa_ 188 QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMD-DGSVVL-ASKDY 264 (279)
T ss_dssp CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEET-TTEEEE-EETTT
T ss_pred ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeC-CCcEEE-EeCCC
Confidence 455555322 13457899999999 554433 455799998 4577776664331 24578999999 987555 56899
Q ss_pred eEEEEECcCC
Q 017601 307 EVFCGQWRES 316 (369)
Q Consensus 307 ~i~vwd~~~~ 316 (369)
+|++|.....
T Consensus 265 ~v~~fr~~~~ 274 (279)
T d1q7fa_ 265 RLYIYRYVQL 274 (279)
T ss_dssp EEEEEECSCC
T ss_pred eEEEEEeeee
Confidence 9999988753
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.94 E-value=0.0041 Score=54.01 Aligned_cols=79 Identities=6% Similarity=-0.057 Sum_probs=56.4
Q ss_pred CcEEEEEECCCC-cE-EEEeCCCcEEEEeCCCc-eeeee-------ccccccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 242 DILYAVCSSSTG-NI-AVAGADRTVTIYDPRRW-SALSR-------WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 242 ~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~~~-~~~~~-------~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
...+.++|+|++ .| ++-+..+.|..||+... ..... .... ......+++.+ +|++.++....+.|.++
T Consensus 177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~-~~~PdGl~vD~-~G~l~Va~~~~g~V~~~ 254 (319)
T d2dg1a1 177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDS-DDNLYVAMYGQGRVLVF 254 (319)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBT-TCCEEEEEETTTEEEEE
T ss_pred ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCC-ccceeeeeEcC-CCCEEEEEcCCCEEEEE
Confidence 456889999999 44 55567889999987642 11111 1111 12356899999 99999888889999999
Q ss_pred ECcCCceeEEEE
Q 017601 312 QWRESSKVFAFR 323 (369)
Q Consensus 312 d~~~~~~~~~~~ 323 (369)
|. .++.+..+.
T Consensus 255 ~p-~G~~l~~i~ 265 (319)
T d2dg1a1 255 NK-RGYPIGQIL 265 (319)
T ss_dssp CT-TSCEEEEEE
T ss_pred CC-CCcEEEEEe
Confidence 95 677777774
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.80 E-value=0.0047 Score=53.63 Aligned_cols=191 Identities=10% Similarity=0.082 Sum_probs=106.1
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcc-eEEEEe--eeCCcceeeeccCCCCCCCCcEEEEEc----CCeEEEEeCC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIH-LRTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVTE----GCQLTIWDLR 225 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s~----d~~v~iwD~~ 225 (369)
+++|.+++ .++.+- ...+.|.-||.+.. ...... ...+..+.+ ++++..+++... .+.+...|..
T Consensus 44 G~~~D~~G-~Ly~~D-~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~------~~dG~l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 44 GLNFDRQG-QLFLLD-VFEGNIFKINPETKEIKRPFVSHKANPAAIKI------HKDGRLFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp EEEECTTS-CEEEEE-TTTCEEEEECTTTCCEEEEEECSSSSEEEEEE------CTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred eCEECCCC-CEEEEE-CCCCEEEEEECCCCeEEEEEeCCCCCeeEEEE------CCCCCEEEEecCCCccceeEEEEcCC
Confidence 78999854 455555 67888988886532 222111 112233333 245544444322 2345555555
Q ss_pred cccCCceeeeeecc-CCCcEEEEEECCCCcEEEEeCC-------CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCC
Q 017601 226 MKENGGCLHRICGS-VGDILYAVCSSSTGNIAVAGAD-------RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSN 297 (369)
Q Consensus 226 ~~~~~~~~~~~~~~-~~~~v~~v~~sp~g~lasgs~D-------~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~ 297 (369)
+. ......... .....+.+++.|+|.|..+..+ +.+..++... +.+..+... -...+.++|+| |++
T Consensus 116 ~~---~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~-~~~pnGia~s~-dg~ 189 (319)
T d2dg1a1 116 GD---NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQN-ISVANGIALST-DEK 189 (319)
T ss_dssp SC---SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEE-ESSEEEEEECT-TSS
T ss_pred Cc---eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeec-cceeeeeeecc-ccc
Confidence 44 222222211 1356788999999944333322 2355555443 333333333 34468899999 988
Q ss_pred EE-EEEECCCeEEEEECcCC-ceeEEE--------EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 298 YI-YVQGVDYEVFCGQWRES-SKVFAF--------RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 298 ~l-~s~s~D~~i~vwd~~~~-~~~~~~--------~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.| ++-+..++|..||+... ...... .+...-.++..-.+|++.++....+.|.++|. .|+
T Consensus 190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~ 259 (319)
T d2dg1a1 190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGY 259 (319)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSC
T ss_pred eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCc
Confidence 65 55566889999998652 211111 11111134444568999898899999999995 454
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.0051 Score=56.52 Aligned_cols=194 Identities=10% Similarity=-0.032 Sum_probs=104.2
Q ss_pred EecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe-------cccceEEEEeCCc-ceEE
Q 017601 114 VDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR-------SFSKSIDVYDQDI-HLRT 185 (369)
Q Consensus 114 ~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~-------s~d~~i~lwd~~~-~~~~ 185 (369)
.+.+|.++++++.++...+- +... ...........|||++..++...- +..+.+.+||+.. ....
T Consensus 33 ~~~~g~i~~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~ 105 (465)
T d1xfda1 33 REQKGTVRLWNVETNTSTVL-----IEGK--KIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS 105 (465)
T ss_dssp CCSSSCEEEBCGGGCCCEEE-----ECTT--TTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE
T ss_pred EeCCCcEEEEECCCCCEEEE-----EcCc--cccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee
Confidence 46678899999876532110 1111 011112336789997665444321 3356788888753 2233
Q ss_pred EEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE-----------------EEE
Q 017601 186 LRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL-----------------YAV 247 (369)
Q Consensus 186 ~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v-----------------~~v 247 (369)
+.... .... ++...++|||..++-+. ++.|.+.+..++ ..++.........| .++
T Consensus 106 l~~~~~~~~~---l~~~~wSPDG~~iafv~-~~nl~~~~~~~~---~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~ 178 (465)
T d1xfda1 106 LDPPEVSNAK---LQYAGWGPKGQQLIFIF-ENNIYYCAHVGK---QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (465)
T ss_dssp CCCTTCCSCC---CSBCCBCSSTTCEEEEE-TTEEEEESSSSS---CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred ccCccCCccc---cceeeeccCCceEEEEe-cceEEEEecCCC---ceEEEecccCcceeeccccchhhhhhhccccceE
Confidence 32211 1122 23334567787777665 567888888765 33332221101212 467
Q ss_pred EECCCC-cEEEEeC-CCc---------------------------------EEEEeCCCceeeee------ccccccCce
Q 017601 248 CSSSTG-NIAVAGA-DRT---------------------------------VTIYDPRRWSALSR------WVHCSKYEI 286 (369)
Q Consensus 248 ~~sp~g-~lasgs~-D~~---------------------------------v~vwD~~~~~~~~~------~~~h~~~~v 286 (369)
-||||| .||.... +.. +.|+|+.++..... .... ...+
T Consensus 179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~-~~y~ 257 (465)
T d1xfda1 179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR-EYYI 257 (465)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS-SEEE
T ss_pred EECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccc-ccee
Confidence 799999 7776542 222 33444443322111 1111 2247
Q ss_pred EEEEEcCCCCCEEEEEE-CC---CeEEEEECcCCceeEEEE
Q 017601 287 TGLSFSSIDSNYIYVQG-VD---YEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 287 ~~l~~sp~d~~~l~s~s-~D---~~i~vwd~~~~~~~~~~~ 323 (369)
..+.|+| +++.++... .+ ..+.++|..++++...+.
T Consensus 258 ~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~ 297 (465)
T d1xfda1 258 TMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHE 297 (465)
T ss_dssp EEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred eeeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence 7899999 887665532 23 268889999987766664
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.28 E-value=0.041 Score=46.79 Aligned_cols=201 Identities=9% Similarity=-0.074 Sum_probs=110.8
Q ss_pred EEEEeecCCCCceEEEEEe-cCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEE
Q 017601 97 SIALAETDSSGYMVLGSVD-SYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 97 ~l~~s~~~~~~~~~las~d-~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
+..|++.+ ..|.=.| ..++|+.||..++. ...+.+. ....++++.++ +.+++++ . ..+.
T Consensus 22 gp~wd~~~----~~l~wvDi~~~~I~r~d~~~g~----~~~~~~~--------~~~~~i~~~~d-g~l~va~--~-~gl~ 81 (295)
T d2ghsa1 22 GPTFDPAS----GTAWWFNILERELHELHLASGR----KTVHALP--------FMGSALAKISD-SKQLIAS--D-DGLF 81 (295)
T ss_dssp EEEEETTT----TEEEEEEGGGTEEEEEETTTTE----EEEEECS--------SCEEEEEEEET-TEEEEEE--T-TEEE
T ss_pred CCeEECCC----CEEEEEECCCCEEEEEECCCCe----EEEEECC--------CCcEEEEEecC-CCEEEEE--e-CccE
Confidence 34566542 2333344 44567777765441 1112221 12346888774 4455443 3 4588
Q ss_pred EEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc----CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEEC
Q 017601 176 VYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE----GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSS 250 (369)
Q Consensus 176 lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~----d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~s 250 (369)
++|... ....+.................+++|...++... .+.-.+|.+..+ +........ ...+.++|+
T Consensus 82 ~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g---~~~~~~~~~--~~~Ng~~~s 156 (295)
T d2ghsa1 82 LRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG---KVTKLFADI--SIPNSICFS 156 (295)
T ss_dssp EEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT---EEEEEEEEE--SSEEEEEEC
T ss_pred EeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC---cEEEEeecc--CCcceeeec
Confidence 888753 3333322211111111111223455544444332 234556666554 333333333 556889999
Q ss_pred CCC--cEEEEeCCCcEEEEeCCC--ce------eeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeE
Q 017601 251 STG--NIAVAGADRTVTIYDPRR--WS------ALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVF 320 (369)
Q Consensus 251 p~g--~lasgs~D~~v~vwD~~~--~~------~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~ 320 (369)
+++ .+++-+..+.|..|++.. +. ....+.+. ......+++.+ +|++.++.-..+.|..||. .++.+.
T Consensus 157 ~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~-~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp-~G~~~~ 233 (295)
T d2ghsa1 157 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIA 233 (295)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEE
T ss_pred CCCceEEEeecccceeeEeeecccccccccceEEEeccCcc-cccccceEEcC-CCCEEeeeeCCCceEEecC-CCcEee
Confidence 999 556667788899888642 11 11223334 45678899999 9998888777889999995 577777
Q ss_pred EEEcC
Q 017601 321 AFRGD 325 (369)
Q Consensus 321 ~~~g~ 325 (369)
.+.-.
T Consensus 234 ~i~lP 238 (295)
T d2ghsa1 234 RYEVP 238 (295)
T ss_dssp EEECS
T ss_pred EecCC
Confidence 77643
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.02 E-value=0.077 Score=45.01 Aligned_cols=188 Identities=12% Similarity=0.060 Sum_probs=108.4
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcce-EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHL-RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG 231 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~ 231 (369)
|..|++.++.++-+- -..+.|.-||..... ..+.....+..+.+.. ++.|+.++.+ .+.++|..++ +
T Consensus 22 gp~wd~~~~~l~wvD-i~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~-------dg~l~va~~~-gl~~~d~~tg---~ 89 (295)
T d2ghsa1 22 GPTFDPASGTAWWFN-ILERELHELHLASGRKTVHALPFMGSALAKIS-------DSKQLIASDD-GLFLRDTATG---V 89 (295)
T ss_dssp EEEEETTTTEEEEEE-GGGTEEEEEETTTTEEEEEECSSCEEEEEEEE-------TTEEEEEETT-EEEEEETTTC---C
T ss_pred CCeEECCCCEEEEEE-CCCCEEEEEECCCCeEEEEECCCCcEEEEEec-------CCCEEEEEeC-ccEEeecccc---e
Confidence 467777555554443 567889889876433 3232222223333332 3466666654 5889999887 3
Q ss_pred eeeeee--cc-CCCcEEEEEECCCCcEEEEe--C---CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE-EE
Q 017601 232 CLHRIC--GS-VGDILYAVCSSSTGNIAVAG--A---DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY-VQ 302 (369)
Q Consensus 232 ~~~~~~--~~-~~~~v~~v~~sp~g~lasgs--~---D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~-s~ 302 (369)
...... .. ....++.+.+.|+|.|..+. . .+.-.+|.+..++......+. ..-+.+.|++ +++.++ +-
T Consensus 90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~--~~~Ng~~~s~-d~~~l~~~d 166 (295)
T d2ghsa1 90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI--SIPNSICFSP-DGTTGYFVD 166 (295)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE--SSEEEEEECT-TSCEEEEEE
T ss_pred eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc--CCcceeeecC-CCceEEEee
Confidence 222111 11 13468899999999333332 1 234456766666554444333 4568899999 887654 55
Q ss_pred ECCCeEEEEECcCC-----ceeEEE---EcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 303 GVDYEVFCGQWRES-----SKVFAF---RGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 303 s~D~~i~vwd~~~~-----~~~~~~---~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+..+.|..+++... .....+ .+.. ...++..-.+|.+.++.-..+.|..||..
T Consensus 167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~ 228 (295)
T d2ghsa1 167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 228 (295)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence 56778999987531 111121 1111 11344444588888887788889999954
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0028 Score=58.41 Aligned_cols=139 Identities=6% Similarity=0.007 Sum_probs=86.0
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeeccC--CCcEEEEEECCCC-cEEEEe---------CCCcEEEEeCCCceeee
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGSV--GDILYAVCSSSTG-NIAVAG---------ADRTVTIYDPRRWSALS 276 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g-~lasgs---------~D~~v~vwD~~~~~~~~ 276 (369)
.++.-..+|.|.+||+.+++ ....+.... ...+....||||+ .++... ..+.+.++|+.+++...
T Consensus 29 ~~~~~~~~g~i~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~ 105 (465)
T d1xfda1 29 EFIYREQKGTVRLWNVETNT---STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS 105 (465)
T ss_dssp CBCCCCSSSCEEEBCGGGCC---CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE
T ss_pred cEEEEeCCCcEEEEECCCCC---EEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee
Confidence 34444557789999999873 222222211 2456677899999 665543 35678899998876433
Q ss_pred --eccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE---------cCCCe----------eeeeEcC
Q 017601 277 --RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR---------GDSNW----------LGFSKCS 335 (369)
Q Consensus 277 --~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~---------g~~~~----------~~~~~~~ 335 (369)
..... ...+....||| ||+.+|-.. ++.+.+.+...+...+... |...| .++..+|
T Consensus 106 l~~~~~~-~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP 182 (465)
T d1xfda1 106 LDPPEVS-NAKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP 182 (465)
T ss_dssp CCCTTCC-SCCCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred ccCccCC-ccccceeeecc-CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence 23333 44566789999 999988765 7788888887654443331 11111 2344578
Q ss_pred CCCEEEEEeC-CCcEEEEE
Q 017601 336 NRDVLGGWSD-SGSIFVAD 353 (369)
Q Consensus 336 d~~~l~sgs~-dg~I~iWd 353 (369)
||+.||.... +..|..+.
T Consensus 183 Dgk~iaf~~~D~s~V~~~~ 201 (465)
T d1xfda1 183 DGTRLAYAAINDSRVPIME 201 (465)
T ss_dssp TSSEEEEEEEECTTSCEEE
T ss_pred CCCeEEEEEecccccceee
Confidence 9999887653 34444443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.45 E-value=0.023 Score=47.05 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=57.8
Q ss_pred CC--CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe-CCC-----cEEEEeCCCceee
Q 017601 205 NG--GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG-ADR-----TVTIYDPRRWSAL 275 (369)
Q Consensus 205 ~~--~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs-~D~-----~v~vwD~~~~~~~ 275 (369)
|| |..++-++ ++.|.+.|+.++ .. ..+... ...+...+||||| .||-.. .++ .|.+++...++..
T Consensus 8 Pdi~G~~v~f~~-~~dl~~~d~~~g---~~-~~Lt~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~ 81 (281)
T d1k32a2 8 PDIHGDRIIFVC-CDDLWEHDLKSG---ST-RKIVSN-LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK 81 (281)
T ss_dssp EEEETTEEEEEE-TTEEEEEETTTC---CE-EEEECS-SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEe-CCcEEEEECCCC---CE-EEEecC-CCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence 55 66665554 456888899876 43 344433 3778889999999 776443 222 3677777776554
Q ss_pred eecc------ccccCceEEEEEcCCCCCEEEEEE
Q 017601 276 SRWV------HCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 276 ~~~~------~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
.... .. ........|+| |++.|+...
T Consensus 82 ~lt~~~~~~~~~-~~~~~~~~~sp-dg~~l~~~~ 113 (281)
T d1k32a2 82 RITYFSGKSTGR-RMFTDVAGFDP-DGNLIISTD 113 (281)
T ss_dssp ECCCCCEEEETT-EECSEEEEECT-TCCEEEEEC
T ss_pred EeeecCCCccCc-cccccccccCC-CCCEEEEEE
Confidence 3211 11 23456789999 999988753
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.39 E-value=0.19 Score=41.10 Aligned_cols=75 Identities=7% Similarity=-0.051 Sum_probs=44.1
Q ss_pred CcEEEEEECCCCcEEEEeCCC--cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCcee
Q 017601 242 DILYAVCSSSTGNIAVAGADR--TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKV 319 (369)
Q Consensus 242 ~~v~~v~~sp~g~lasgs~D~--~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~ 319 (369)
.......++++..+.....++ .|.++|+..++. ..+..+....+ ..||| ||+.|+- ..++.|+++|+.+++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~lt~~~~~~~--~~~Sp-DG~~I~f-~~~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 192 THVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-RKHTSFTDYYP--RHLNT-DGRRILF-SKGGSIYIFNPDTEKIE 266 (281)
T ss_dssp SCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-EECCCCCSSCE--EEEEE-SSSCEEE-EETTEEEEECTTTCCEE
T ss_pred cccceeeeeccccceecccccccceEEEeCCCCce-EEeecCCCccc--ccCcC-CCCEEEE-EeCCEEEEEECCCCCEE
Confidence 334445555555433333333 466778766543 33433312233 46899 9998775 45788999999887654
Q ss_pred EE
Q 017601 320 FA 321 (369)
Q Consensus 320 ~~ 321 (369)
..
T Consensus 267 ~i 268 (281)
T d1k32a2 267 KI 268 (281)
T ss_dssp EC
T ss_pred Ee
Confidence 43
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.89 E-value=0.37 Score=42.70 Aligned_cols=145 Identities=12% Similarity=0.065 Sum_probs=91.6
Q ss_pred CCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC---cEEEEeCCC------------------c
Q 017601 206 GGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG---NIAVAGADR------------------T 263 (369)
Q Consensus 206 ~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g---~lasgs~D~------------------~ 263 (369)
||.+++... .+..|.+-|+++. ++.+.+...+...+..++..+++ +++.++.+. +
T Consensus 98 DGrylFVNDkan~RVAvIdl~~f---kt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~ 174 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVM---KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 174 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTT---EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred ceeEEEEEcCCCceEEEEECcce---eeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence 444444433 4789999999988 56554444334667777776655 777766643 3
Q ss_pred EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe---------------EEEE-----------------
Q 017601 264 VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE---------------VFCG----------------- 311 (369)
Q Consensus 264 v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~---------------i~vw----------------- 311 (369)
+.++|..+.+......- ......++++| +|+++++.+.+.. +.++
T Consensus 175 ~t~ID~~tm~V~~QV~V--~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei 251 (459)
T d1fwxa2 175 FTAVDADKWEVAWQVLV--SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 251 (459)
T ss_dssp EEEEETTTTEEEEEEEE--SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred EEEEecCCceEEEEeee--CCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence 66789888777665553 24567899999 9999999875421 3333
Q ss_pred ------ECcC---CceeEEEEcCCCeeeeeEcCCCCEEEEE-eCCCcEEEEECCC
Q 017601 312 ------QWRE---SSKVFAFRGDSNWLGFSKCSNRDVLGGW-SDSGSIFVADVVA 356 (369)
Q Consensus 312 ------d~~~---~~~~~~~~g~~~~~~~~~~~d~~~l~sg-s~dg~I~iWd~~~ 356 (369)
|.+. ...++.+.-..+-.++..++||++++.+ .-+.++.|.|++.
T Consensus 252 ngV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K 306 (459)
T d1fwxa2 252 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 306 (459)
T ss_dssp TTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred CCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence 4332 1222222211112456667899986654 4689999999864
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.61 E-value=0.83 Score=40.42 Aligned_cols=130 Identities=12% Similarity=-0.019 Sum_probs=73.6
Q ss_pred eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC-----------------------------------
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD----------------------------------- 261 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D----------------------------------- 261 (369)
.+...|..+. +....+... .....++++|+| ++++.+.+
T Consensus 174 ~~t~ID~~tm---~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~ 248 (459)
T d1fwxa2 174 VFTAVDADKW---EVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 248 (459)
T ss_dssp EEEEEETTTT---EEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred EEEEEecCCc---eEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence 4677888876 555555444 556678999999 66665532
Q ss_pred ---CcEEEEeCCCc--e-eeeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCc--------eeEEEEcCC
Q 017601 262 ---RTVTIYDPRRW--S-ALSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESS--------KVFAFRGDS 326 (369)
Q Consensus 262 ---~~v~vwD~~~~--~-~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~--------~~~~~~g~~ 326 (369)
+-+.+-|.++. . .+..+.- ......+.++| ||++++.++ .|.++-|.|++.-. ......+..
T Consensus 249 ~eingV~VVD~~~~~~~~v~~yIPV--pKsPHGV~vSP-DGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~ 325 (459)
T d1fwxa2 249 QELNGVKVVDGRKEASSLFTRYIPI--ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP 325 (459)
T ss_dssp EEETTEEEEECSGG--CSSEEEEEE--ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred EEeCCceeecccccCCcceeEEEec--CCCCCceEECC-CCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence 22345554431 1 1112221 13356789999 999987765 58899999997510 000000100
Q ss_pred --Ceeee--eEcCCCCEEEEEeCCCcEEEEECC
Q 017601 327 --NWLGF--SKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 327 --~~~~~--~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
....+ .....|....|---|..|--|++.
T Consensus 326 elglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred ccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence 00000 111244445555679999999985
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.17 E-value=0.3 Score=42.18 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=58.0
Q ss_pred eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC-CcEEEEeCCCcee--eeeccccccCceEEEEEcC
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD-RTVTIYDPRRWSA--LSRWVHCSKYEITGLSFSS 293 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D-~~v~vwD~~~~~~--~~~~~~h~~~~v~~l~~sp 293 (369)
.+.+||..++.= ...............+.++.++| .++.|+.+ .++.+||..+..- ...+... .. -.+.+..+
T Consensus 53 ~~~~yd~~t~~w-~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~-r~-~~~~~~~~ 129 (387)
T d1k3ia3 53 LTSSWDPSTGIV-SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RG-YQSSATMS 129 (387)
T ss_dssp EEEEECTTTCCB-CCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CS-SCEEEECT
T ss_pred EEEEEECCCCcE-eecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccccccccccc-cc-ccceeeec
Confidence 467899987721 11112221101222356788999 66776554 6899999987443 3333322 22 23556677
Q ss_pred CCCCEEEEEECC------CeEEEEECcCCc
Q 017601 294 IDSNYIYVQGVD------YEVFCGQWRESS 317 (369)
Q Consensus 294 ~d~~~l~s~s~D------~~i~vwd~~~~~ 317 (369)
|+++++.++.+ ..+.+||..+..
T Consensus 130 -dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 130 -DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp -TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred -CCceeeeccccccccccceeeeecCCCCc
Confidence 89999988753 368899988754
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.02 E-value=1.4 Score=37.98 Aligned_cols=198 Identities=13% Similarity=0.176 Sum_probs=105.5
Q ss_pred EEEECCCCc--eeEEEEecccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc--C--CeEEEEeCC
Q 017601 153 GLCFSPSQW--SMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE--G--CQLTIWDLR 225 (369)
Q Consensus 153 ~l~~~p~~~--~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~--d--~~v~iwD~~ 225 (369)
++-++|.++ .+++.+ ...+-+.+||+. +.++.+ .......+......+.+.....+++++. + .+|.+|.+.
T Consensus 30 AIW~n~~~p~~SlI~gT-dK~~Gl~vYdL~G~~l~~~-~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id 107 (353)
T d1h6la_ 30 AIWLDPKNPQNSKLITT-NKKSGLAVYSLEGKMLHSY-HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (353)
T ss_dssp EEECCSSCGGGCEEEEE-ETTSCCEEEETTCCEEEEC-CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEE
T ss_pred eEEcCCCCcCccEEEEE-cCcCCEEEEcCCCcEEEec-ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEec
Confidence 344566433 444444 455569999985 333332 1112222222211111111123455553 2 368888775
Q ss_pred cccCCceeeeeecc------CCCcEEEEEE--CCC-C--cEEEEeCCCcEEEEeCC---Cc----eeeeeccccccCceE
Q 017601 226 MKENGGCLHRICGS------VGDILYAVCS--SST-G--NIAVAGADRTVTIYDPR---RW----SALSRWVHCSKYEIT 287 (369)
Q Consensus 226 ~~~~~~~~~~~~~~------~~~~v~~v~~--sp~-g--~lasgs~D~~v~vwD~~---~~----~~~~~~~~h~~~~v~ 287 (369)
... ..+..+... ....++.+|+ +|. | .+++...+|.+..|.+. ++ +.++++.. ..++-
T Consensus 108 ~~~--~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~--~~q~E 183 (353)
T d1h6la_ 108 GKN--GTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM--NSQTE 183 (353)
T ss_dssp TTT--TEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC--SSCEE
T ss_pred Ccc--cccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC--CCccc
Confidence 321 233333211 0235788887 665 4 56677789999888653 23 33445543 46789
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECcC-----CceeEEEEc-CC--Ceeeee--EcC--CCCEEEEEeCCCcEEEEECC
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWRE-----SSKVFAFRG-DS--NWLGFS--KCS--NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~~-----~~~~~~~~g-~~--~~~~~~--~~~--d~~~l~sgs~dg~I~iWd~~ 355 (369)
+|.+.+ ..+.|..+-.+..|+.++... ...+....+ +- ..-++. ... +|-+|+|.-.+++..|||.+
T Consensus 184 GCVvDd-e~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~ 262 (353)
T d1h6la_ 184 GMAADD-EYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ 262 (353)
T ss_dssp EEEEET-TTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEeC-CCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence 999999 777888877777776666543 122222112 10 012332 233 44556666678999999987
Q ss_pred CC
Q 017601 356 AK 357 (369)
Q Consensus 356 ~~ 357 (369)
+.
T Consensus 263 ~~ 264 (353)
T d1h6la_ 263 GQ 264 (353)
T ss_dssp TT
T ss_pred CC
Confidence 65
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=93.68 E-value=0.64 Score=43.06 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=34.0
Q ss_pred eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 307 EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 307 ~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.+.-||+.+++.+=.++....+.+-.....+.+|+.|+.||.++.+|.++|+.
T Consensus 458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~ 510 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (573)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcE
Confidence 45556666666554443322111111112678999999999999999999985
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.00 E-value=1.9 Score=35.19 Aligned_cols=234 Identities=12% Similarity=-0.001 Sum_probs=121.2
Q ss_pred EEEEEeCCeEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEec-CCcEEE
Q 017601 44 FVYIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDS-YGHLIV 122 (369)
Q Consensus 44 ~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~-~g~v~~ 122 (369)
|++++.+..|.++.++- ... +... ....+..+...+..|+|.+.+ ..+.-.|. .+.|+.
T Consensus 3 fLl~s~~~~I~~~~ld~--~~~-------------~~~~-~~~~~~~~~~~~~~ld~D~~~----~~iywsd~~~~~I~~ 62 (263)
T d1npea_ 3 HLLFAQTGKIERLPLER--NTM-------------KKTE-AKAFLHIPAKVIIGLAFDCVD----KVVYWTDISEPSIGR 62 (263)
T ss_dssp EEEEEEEEEEEEEEESS--SCB-------------CGGG-CEEEEEEEEEEEEEEEEETTT----TEEEEEETTTTEEEE
T ss_pred EEEEeCCCeEEEEECCC--ccc-------------cccc-cccccccCCCcEEEEEEEeCC----CEEEEEECCCCeEEE
Confidence 68888888877766421 100 0000 011122334557788887653 34444443 456777
Q ss_pred EEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcce-EEEEe--eeCCcceeeec
Q 017601 123 SKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL-RTLRT--LWYPSSLNFVQ 199 (369)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~-~~~~~--~~~~~~v~~~~ 199 (369)
.+++.... ...+... -....++++...+..+..+- ...+.|.+.+.+... +.+.. ...|..+...
T Consensus 63 ~~l~g~~~-----~~v~~~~-----~~~p~~iAvD~~~~~lY~~d-~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vd- 130 (263)
T d1npea_ 63 ASLHGGEP-----TTIIRQD-----LGSPEGIALDHLGRTIFWTD-SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTD- 130 (263)
T ss_dssp EESSSCCC-----EEEECTT-----CCCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-
T ss_pred EEcccCCc-----EEEEEec-----cccccEEEEeccCCeEEEec-cCCCEEEEEecCCceEEEEecccccCCcEEEEe-
Confidence 66654321 1111110 01234788887566555554 667889998876322 22211 1233333332
Q ss_pred cCCCCCCCCcEEEEE-cCCeEEEE--eCCcccCCceeeeeeccCCCcEEEEEECCCC-cE-EEEeCCCcEEEEeCCCcee
Q 017601 200 NLSPVNGGPNMLAVT-EGCQLTIW--DLRMKENGGCLHRICGSVGDILYAVCSSSTG-NI-AVAGADRTVTIYDPRRWSA 274 (369)
Q Consensus 200 ~~~~~~~~~~lla~s-~d~~v~iw--D~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~~~~~ 274 (369)
|..+.+.-.. ..+..+|| ++... .. ..+....-...+++++.+.+ +| .+-...++|...|+.....
T Consensus 131 -----p~~g~ly~t~~~~~~~~I~r~~~dG~---~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~ 201 (263)
T d1npea_ 131 -----PVRGNLYWTDWNRDNPKIETSHMDGT---NR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR 201 (263)
T ss_dssp -----TTTTEEEEEECCSSSCEEEEEETTSC---CC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred -----cccCcEEEeecCCCCcEEEEecCCCC---Cc-eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe
Confidence 2233443322 22233454 44332 11 22222113567899998877 55 4445678899999875443
Q ss_pred eeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 275 LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 275 ~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
...+.+- . ...+|++. ++.+..+-...+.|...|..+++.+..+
T Consensus 202 ~~v~~~~-~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 202 RKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (263)
T ss_dssp EEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEECCC-C-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEE
Confidence 3333332 2 23577764 2334444445678988899888777666
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=92.95 E-value=1.3 Score=40.77 Aligned_cols=54 Identities=7% Similarity=0.055 Sum_probs=36.7
Q ss_pred CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 306 YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.+.-||+.+++.+=.+.-...+.+-..+..+.+++.|+.||.++.+|.++|+.
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~ 491 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcE
Confidence 467788888887765553222111111122567888999999999999999985
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=92.88 E-value=0.41 Score=41.29 Aligned_cols=93 Identities=12% Similarity=-0.044 Sum_probs=58.3
Q ss_pred EEEEeCCCcee--eeec-cccccCceEEEEEcCCCCCEEEEEECC-CeEEEEECcCCceeEEEEc-CCCe-eeeeEcCCC
Q 017601 264 VTIYDPRRWSA--LSRW-VHCSKYEITGLSFSSIDSNYIYVQGVD-YEVFCGQWRESSKVFAFRG-DSNW-LGFSKCSNR 337 (369)
Q Consensus 264 v~vwD~~~~~~--~~~~-~~h~~~~v~~l~~sp~d~~~l~s~s~D-~~i~vwd~~~~~~~~~~~g-~~~~-~~~~~~~d~ 337 (369)
+.+||+.+++- .... ..| .....+..+.+ ++.+++.|+.+ ..+.+||..+..-...-.. ..++ .......||
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~-~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG 131 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKH-DMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG 131 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSC-CCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred EEEEECCCCcEeecCCCCCCc-ccceeEEEEec-CCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC
Confidence 67899987543 2222 223 33345677888 99999998776 5899999987543221110 1111 223335589
Q ss_pred CEEEEEeCC------CcEEEEECCCCc
Q 017601 338 DVLGGWSDS------GSIFVADVVAKE 358 (369)
Q Consensus 338 ~~l~sgs~d------g~I~iWd~~~~~ 358 (369)
++++.|+.+ ..+.+||..+.+
T Consensus 132 ~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 132 RVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ceeeeccccccccccceeeeecCCCCc
Confidence 998888753 368899987753
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.70 E-value=0.95 Score=41.93 Aligned_cols=54 Identities=6% Similarity=-0.087 Sum_probs=37.1
Q ss_pred CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 306 YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.+.-+|+.+++.+=.+..+....+-.....+.+++.|+.||.++.+|.+||+.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~ 519 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcE
Confidence 467778888877766664333111111122677888999999999999999985
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=2.3 Score=34.73 Aligned_cols=196 Identities=9% Similarity=-0.050 Sum_probs=104.9
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCc-----ceEEEEe--eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEe
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDI-----HLRTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWD 223 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-----~~~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD 223 (369)
..+++|++..+.++-+- ...+.|.-.+.+. ....+.. ...+..+++-. ..+..+.+-...++|.+.+
T Consensus 32 ~~~id~d~~~~~lYw~D-~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~-----~~~~lY~~d~~~~~I~v~~ 105 (266)
T d1ijqa1 32 VVALDTEVASNRIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW-----IHSNIYWTDSVLGTVSVAD 105 (266)
T ss_dssp EEEEEEETTTTEEEEEE-TTTTEEEEEEC--------CEEEECSSCSCCCEEEEET-----TTTEEEEEETTTTEEEEEE
T ss_pred eEEEEEEeCCCEEEEEE-CCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEee-----ccceEEEEecCCCEEEeEe
Confidence 34788988655554443 5566666555431 1111111 12334443321 1123344444567899999
Q ss_pred CCcccCCceeeeeeccCCCcEEEEEECCCC-cEE-EE-eCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE
Q 017601 224 LRMKENGGCLHRICGSVGDILYAVCSSSTG-NIA-VA-GADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~la-sg-s~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
+... .....+... ......++++|.. +|. +- +..+.|.-.++............ -...+++++.+ ..+.|+
T Consensus 106 ~~g~---~~~~~~~~~-~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~-~~~p~gl~iD~-~~~~lY 179 (266)
T d1ijqa1 106 TKGV---KRKTLFREN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDL-LSGRLY 179 (266)
T ss_dssp TTSS---SEEEEEECT-TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-CSCEEEEEEET-TTTEEE
T ss_pred cCCc---eEEEEEcCC-CCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccc-cceeeEEEeec-cccEEE
Confidence 8755 333323322 3668899998865 443 32 33445666666433222222233 35678999998 555555
Q ss_pred EE-ECCCeEEEEECcCCceeEEEEcCCCe---eeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 301 VQ-GVDYEVFCGQWRESSKVFAFRGDSNW---LGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 301 s~-s~D~~i~vwd~~~~~~~~~~~g~~~~---~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
-+ +..++|...|+........+.+.... .++..- ++.+..+-..++.|+..+..+++.
T Consensus 180 w~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~ 241 (266)
T d1ijqa1 180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (266)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcc
Confidence 44 56789999999765544444333211 122221 344444555778888888777653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.27 E-value=3.1 Score=33.82 Aligned_cols=195 Identities=10% Similarity=-0.009 Sum_probs=107.1
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEe--eeCCcceeeeccCCCCCCCCcEE-EEEcCCeEEEEeCCc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRT--LWYPSSLNFVQNLSPVNGGPNML-AVTEGCQLTIWDLRM 226 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~~~ll-a~s~d~~v~iwD~~~ 226 (369)
+.+++|.+.++.++-+- ..++.|...+.+. ....+.. ...|..+++-. -++.|. +-...+.|.+.++..
T Consensus 38 ~~~ld~D~~~~~iywsd-~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~------~~~~lY~~d~~~~~I~~~~~dg 110 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTD-ISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH------LGRTIFWTDSQLDRIEVAKMDG 110 (263)
T ss_dssp EEEEEEETTTTEEEEEE-TTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET------TTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEEeCCCEEEEEE-CCCCeEEEEEcccCCcEEEEEeccccccEEEEec------cCCeEEEeccCCCEEEEEecCC
Confidence 34788988666555544 6678888776542 2222211 12334444321 123333 334567899999875
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cEE-EEeCCCcEEEE--eCCCceeeeeccccccCceEEEEEcCCCCCEEE-E
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NIA-VAGADRTVTIY--DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY-V 301 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~la-sgs~D~~v~vw--D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~-s 301 (369)
. .+ ..+.......+..+++.|.. ++. +-...+..+|| ++............ -....++++.+ ..+.|+ +
T Consensus 111 ~---~~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~-~~~P~glaiD~-~~~~lYw~ 184 (263)
T d1npea_ 111 T---QR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDN-LGLPNGLTFDA-FSSQLCWV 184 (263)
T ss_dssp C---SC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTT-CSCEEEEEEET-TTTEEEEE
T ss_pred c---eE-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeec-ccccceEEEee-cCcEEEEE
Confidence 4 22 22222213678899999877 444 32222233344 55432222222222 34568999988 555554 4
Q ss_pred EECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 302 QGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 302 ~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
-...+.|...|+........+.+-....++..- ++.+..+=...+.|...|..+++.
T Consensus 185 d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~ 241 (263)
T d1npea_ 185 DAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKE 241 (263)
T ss_dssp ETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEE
T ss_pred eCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCcc
Confidence 456788999998765554555553311233321 344444555678898889887764
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.10 E-value=5.5 Score=36.37 Aligned_cols=53 Identities=8% Similarity=-0.049 Sum_probs=34.2
Q ss_pred CeEEEEECcCCceeEEEE-cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 306 YEVFCGQWRESSKVFAFR-GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~-g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.+.-+|+++++.+=.+. +...+.+... ..+.+++.|+.||.++.+|.++|+.
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~-TagglVf~G~~dg~l~A~Da~tGe~ 497 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLY-TKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEE-ETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeE-ecCCEEEEECCCCeEEEEECCCCcE
Confidence 356677777776654442 2221111111 1467888899999999999999975
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.81 E-value=4.2 Score=34.49 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=38.6
Q ss_pred CcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeee-ccccccCceEEEEEcCCCCCEEEEE
Q 017601 242 DILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSR-WVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 242 ~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~-~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
...+.|+++||+ .+++-...+.|++|++.....+.. ...++....-.+.+.+.++.+.+.+
T Consensus 206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 668999999999 556666788999999875332221 1112245567788876355554443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.24 E-value=4.7 Score=32.69 Aligned_cols=207 Identities=9% Similarity=-0.057 Sum_probs=103.6
Q ss_pred ceeeEEEEeecCCCCceEEEEEec-CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDS-YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~-~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
..+..|+|.+.+ ..+.-.|. .+.|+..+++...... .....+.... ....++|+.+.+..+..+- ...
T Consensus 30 ~~~~~id~d~~~----~~lYw~D~~~~~I~~~~l~~~~~~~-~~~~~~~~~~-----~~p~glAvD~~~~~lY~~d-~~~ 98 (266)
T d1ijqa1 30 RNVVALDTEVAS----NRIYWSDLSQRMICSTQLDRAHGVS-SYDTVISRDI-----QAPDGLAVDWIHSNIYWTD-SVL 98 (266)
T ss_dssp SSEEEEEEETTT----TEEEEEETTTTEEEEEEC---------CEEEECSSC-----SCCCEEEEETTTTEEEEEE-TTT
T ss_pred CceEEEEEEeCC----CEEEEEECCCCEEEEEEecCCCCCc-ceEEEEeCCC-----CCcceEEEeeccceEEEEe-cCC
Confidence 456688887753 34554443 4456555554221100 0000111100 1123788887666666655 777
Q ss_pred ceEEEEeCCcceEEEEee---eCCcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 172 KSIDVYDQDIHLRTLRTL---WYPSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 172 ~~i~lwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+.|.+.+.+......... ..|..+..-. ..+.+.-+. ..+.|.-.++... ....+........++
T Consensus 99 ~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~------~~g~ly~~~~~~~~~I~r~~~dGs----~~~~l~~~~~~~p~g 168 (266)
T d1ijqa1 99 GTVSVADTKGVKRKTLFRENGSKPRAIVVDP------VHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVTENIQWPNG 168 (266)
T ss_dssp TEEEEEETTSSSEEEEEECTTCCEEEEEEET------TTTEEEEEECSSSCEEEEEETTSC----CEEEEECSSCSCEEE
T ss_pred CEEEeEecCCceEEEEEcCCCCCcceEEEEc------ccCeEEEeccCCCcceeEeccCCC----ceecccccccceeeE
Confidence 899999876432222111 1333333322 233443332 2345555565433 222232221356789
Q ss_pred EEECCCC-cEE-EEeCCCcEEEEeCCCceee--eeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 247 VCSSSTG-NIA-VAGADRTVTIYDPRRWSAL--SRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 247 v~~sp~g-~la-sgs~D~~v~vwD~~~~~~~--~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
+++.+.+ .|. +-...+.|...|+...... ...... .....++++.. +.+..+-..++.|...+..++.....+
T Consensus 169 l~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~-~~~p~~lav~~--~~ly~td~~~~~I~~~~~~~g~~~~~~ 245 (266)
T d1ijqa1 169 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLL 245 (266)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT-TSSEEEEEEET--TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCc-ccccEEEEEEC--CEEEEEECCCCeEEEEECCCCcceEEE
Confidence 9999877 454 4466788988888653322 222222 23455676653 334444446678877777766555444
Q ss_pred E
Q 017601 323 R 323 (369)
Q Consensus 323 ~ 323 (369)
.
T Consensus 246 ~ 246 (266)
T d1ijqa1 246 A 246 (266)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=86.97 E-value=2.7 Score=38.60 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=39.2
Q ss_pred cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 263 TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 263 ~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
.+.-||+.+++.+=+.... . +..+=..+- .+.++..++.|+.++.+|.++++.+-.++-
T Consensus 458 ~l~AiD~~tGk~~W~~~~~-~-p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~ 516 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHV-S-PWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (573)
T ss_dssp EEEEEETTTTEEEEEEEES-S-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cEEEeCCCCCceEeeecCC-C-CCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence 4666777776665544322 1 111111222 567888899999999999999999988853
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=86.48 E-value=8.4 Score=32.47 Aligned_cols=105 Identities=10% Similarity=0.048 Sum_probs=61.5
Q ss_pred cEEEEE---cCCeEEEEeCCcccC-CceeeeeeccCCCcEEEEEECCCC-cEEEEe--C-------------CCcEEEEe
Q 017601 209 NMLAVT---EGCQLTIWDLRMKEN-GGCLHRICGSVGDILYAVCSSSTG-NIAVAG--A-------------DRTVTIYD 268 (369)
Q Consensus 209 ~lla~s---~d~~v~iwD~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs--~-------------D~~v~vwD 268 (369)
+|+++. ...+|.+|++..... ...+.++.+......+.+++..+| .++|-. . -++..+|.
T Consensus 113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~ 192 (340)
T d1v04a_ 113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 192 (340)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence 344443 356899998865421 122333444324568899888888 666621 1 12334443
Q ss_pred CCCceeeeeccccccCceEEEEEcCCCCCEEEEE-ECCCeEEEEECcCC
Q 017601 269 PRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ-GVDYEVFCGQWRES 316 (369)
Q Consensus 269 ~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~-s~D~~i~vwd~~~~ 316 (369)
...++. ..+... -..-+.|+++| |+++|+.+ ...++|+.|++...
T Consensus 193 ~~~~~~-~~~~~~-l~~pNGI~~s~-d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 193 YSPNDV-RVVAEG-FDFANGINISP-DGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp ECSSCE-EEEEEE-ESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTT
T ss_pred EcCCce-EEEcCC-CCccceeEECC-CCCEEEEEeCCCCeEEEEEeCCC
Confidence 333332 222222 34579999999 98876655 55789999999764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.97 E-value=10 Score=31.42 Aligned_cols=108 Identities=10% Similarity=0.215 Sum_probs=66.6
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
+.-.+| ....+|.- + ..++.+||++...+ ++...-+..+.|..|.. ...|+--.+..|.-|++.... .+
T Consensus 67 sAIMhP-~~~IiALr-a-g~~LQiFnletK~k-lks~~~~e~VvfWkWis-----~~~L~lVT~taVYHW~~~g~s--~P 135 (327)
T d1utca2 67 SAIMNP-ASKVIALK-A-GKTLQIFNIEMKSK-MKAHTMTDDVTFWKWIS-----LNTVALVTDNAVYHWSMEGES--QP 135 (327)
T ss_dssp EEEECS-SSSEEEEE-E-TTEEEEEETTTTEE-EEEEECSSCCCEEEESS-----SSEEEEECSSEEEEEESSSSC--CC
T ss_pred hhhcCC-CCcEEEEe-c-CCeEEEEehhHhhh-hceEEcCCCcEEEEecC-----CCEEEEEcCCceEEEcccCCC--Cc
Confidence 466788 45677775 3 56899999975432 34444566777877743 244444445679999996432 46
Q ss_pred eeeeeccC---CCcEEEEEECCCC-cEE-EE--eC----CCcEEEEeCCC
Q 017601 233 LHRICGSV---GDILYAVCSSSTG-NIA-VA--GA----DRTVTIYDPRR 271 (369)
Q Consensus 233 ~~~~~~~~---~~~v~~v~~sp~g-~la-sg--s~----D~~v~vwD~~~ 271 (369)
++.+..+. +..|-.-..+++. +++ +| .. .|.+.+|..++
T Consensus 136 ~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er 185 (327)
T d1utca2 136 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 185 (327)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred hhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc
Confidence 66665332 3567667778888 433 32 22 35667887764
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=83.80 E-value=4 Score=37.33 Aligned_cols=59 Identities=8% Similarity=0.106 Sum_probs=38.4
Q ss_pred CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 262 RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 262 ~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
|.|.-+|+.+++.+-+...- ....+=..+- .+.++..++.|+.++.+|.++++.+-.++
T Consensus 444 G~l~AiD~~TG~~~W~~~~~--~~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~ 502 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEK--FAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEEECTTTCCEEEEEEES--SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccEEEeccCCCceeeEcCCC--CCCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 35777777777765443311 1111101112 45678889999999999999999997775
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=83.69 E-value=6 Score=35.98 Aligned_cols=60 Identities=12% Similarity=0.147 Sum_probs=41.6
Q ss_pred CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 262 RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 262 ~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
|.+.-||+.+++.+-+.... ....+=.++- .+.++..++.|+.++.+|.++++.+-.++-
T Consensus 438 G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l 497 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYP--THWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (560)
T ss_dssp EEEEEEETTTTEEEEEEEES--SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEeCCCCeEeeeccCC--CCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence 46778888888776544321 1122112222 567888899999999999999999988864
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.31 E-value=17 Score=31.31 Aligned_cols=90 Identities=9% Similarity=-0.018 Sum_probs=50.7
Q ss_pred CCCCcEEEE-EcC----CeEEEEeCCcccCCceee-eeeccCCCcEEEEEECCCC-cE-EEEeC---------------C
Q 017601 205 NGGPNMLAV-TEG----CQLTIWDLRMKENGGCLH-RICGSVGDILYAVCSSSTG-NI-AVAGA---------------D 261 (369)
Q Consensus 205 ~~~~~lla~-s~d----~~v~iwD~~~~~~~~~~~-~~~~~~~~~v~~v~~sp~g-~l-asgs~---------------D 261 (369)
|++..++.+ +.+ .+++++|+.++ +.+. .+.. .....++|.+|+ .| .+.-. .
T Consensus 134 pd~~~la~s~d~~G~e~~~l~v~Dl~tg---~~~~~~i~~---~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~ 207 (430)
T d1qfma1 134 EDGEYFAYGLSASGSDWVTIKFMKVDGA---KELPDVLER---VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (430)
T ss_dssp TTSSEEEEEEEETTCSCEEEEEEETTTT---EEEEEEEEE---ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred CCCCEEEEEeccccCchheeEEeccCcc---eeccccccc---ccccceEEcCCCCEEEEEEeccccCcccccccccCCc
Confidence 555555532 223 37999999998 4443 2221 222568899999 44 44311 1
Q ss_pred CcEEEEeCCCceee--eecccc-ccCceEEEEEcCCCCCEEEE
Q 017601 262 RTVTIYDPRRWSAL--SRWVHC-SKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 262 ~~v~vwD~~~~~~~--~~~~~h-~~~~v~~l~~sp~d~~~l~s 301 (369)
..|..+.+.+...- ..+... ....+..+..++ ++++++.
T Consensus 208 ~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i 249 (430)
T d1qfma1 208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLL 249 (430)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEE
T ss_pred ceEEEEECCCCccccccccccccCCceEEeeeccC-CcceeeE
Confidence 24677777664322 222222 023467788898 9998764
|