Citrus Sinensis ID: 017615

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA
ccccccHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHcccEEEccccccccccccccccEEEEccccccHHHHHHHHcccccEEEccccccHHHHHHHHHHHHcccEEEEEcccccccEEEEccccccEEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHccccccEEEEcccccccccccccccccEEEEEccccccHHHHHHHHHHHHHcccccHHccc
cccHHHHHHHHHHHHcccEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHcccEEEEcccccEEccEcccccEEEEccccHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHccccEEEEEEccccccEEEEccccccEEEEEcHHHHHHHHHHHHccccccccccccHHHHHHcccccccccccccHHHEEEEEccccccccHHHHHHHHHHHcHHHcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHcccccEEEEEcccHHHccHHHccccccEEEEEEcccccHHHHHHHHHHHHHHcccccHHHHc
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITneiihnptvNKRLEEMavqnipveegkkqfdvvnkgdvvvLPAFGAAVEEMVTLNnknvqivdttcpwvSKVWTSVekhkkgdytsiihgkysheetvataSFAGKYIIVKNMKEAEYVCDYIlggelngssstKEAFLEKFKKAVskgfdpdvdlVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVEIaedrgipsywidsekrigpgnkIAYKLMHGElvekenwlpkgqitigitsgastpdKAVEDVLKKVFEIKREEALQLA
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPveegkkqfdvvNKGDVVVLPAFGAAVEEMVTLnnknvqivdttcPWVSKVWTsvekhkkgdytsiihgkysheeTVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAvskgfdpdvdlVKVGianqttmlkgeteeIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVEIaedrgipsywidsekrigPGNKIAYKLMHGELVEKENWLPKGQITIgitsgastpdkAVEDVLKKVFEIKREEALQLA
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA
********IIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNG*****EAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGA******VEDVLKKVFE**********
****YTS*****LK*****YTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQ**
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA
**QEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKRE******
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MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query368 2.2.26 [Sep-21-2011]
Q6AVG6459 4-hydroxy-3-methylbut-2-e yes no 1.0 0.801 0.821 0.0
Q94B35466 4-hydroxy-3-methylbut-2-e yes no 1.0 0.789 0.789 1e-179
Q5N249398 4-hydroxy-3-methylbut-2-e yes no 0.964 0.891 0.587 1e-137
Q31S64398 4-hydroxy-3-methylbut-2-e yes no 0.964 0.891 0.587 1e-137
B8HWD3405 4-hydroxy-3-methylbut-2-e yes no 0.953 0.866 0.621 1e-137
Q3M8X6402 4-hydroxy-3-methylbut-2-e yes no 0.975 0.893 0.594 1e-135
P58674402 4-hydroxy-3-methylbut-2-e yes no 0.975 0.893 0.594 1e-135
B0C4N8415 4-hydroxy-3-methylbut-2-e yes no 0.989 0.877 0.585 1e-134
B1WTZ2402 4-hydroxy-3-methylbut-2-e yes no 0.975 0.893 0.625 1e-132
Q8DK29402 4-hydroxy-3-methylbut-2-e yes no 0.961 0.880 0.615 1e-132
>sp|Q6AVG6|ISPH_ORYSJ 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPH PE=2 SV=1 Back     alignment and function desciption
 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/380 (82%), Positives = 339/380 (89%), Gaps = 12/380 (3%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           M+QEYTSD+IK LKENG ++TWG V VKLAE+YGFCWGVERAVQIAYEARKQFP+++IW+
Sbjct: 80  MSQEYTSDVIKTLKENGNQHTWGPVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDRIWL 139

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLE+M VQNIPV+ G K FDVV +GDVVVLPAFGAAVEEM TLN K V
Sbjct: 140 TNEIIHNPTVNKRLEDMGVQNIPVDAGIKDFDVVEQGDVVVLPAFGAAVEEMYTLNEKKV 199

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVW  VEKHKKGDYTSIIHGKYSHEETVATASFAG YIIVKN+ EA YV
Sbjct: 200 QIVDTTCPWVSKVWNMVEKHKKGDYTSIIHGKYSHEETVATASFAGTYIIVKNIAEASYV 259

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGG+L+GSSSTKE FLEKFK AVS GFDPDVDLVKVGIANQTTMLKGETEEIGKLV
Sbjct: 260 CDYILGGQLDGSSSTKEEFLEKFKNAVSPGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 319

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV------------ 288
           EKTMMR+FGVENVN+HFI+FNTICDATQERQDAMY++V+EKVDLILVV            
Sbjct: 320 EKTMMRRFGVENVNDHFIAFNTICDATQERQDAMYQLVKEKVDLILVVGGWNSSNTSHLQ 379

Query: 289 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKA 348
           EI E  GIPSYWIDSE+RIGPGNKI+YKL HGELVEKENWLP+G ITIG+TSGASTPDK 
Sbjct: 380 EIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEKENWLPEGPITIGVTSGASTPDKV 439

Query: 349 VEDVLKKVFEIKREEALQLA 368
           VED L+KVFEIKR+E LQ A
Sbjct: 440 VEDALQKVFEIKRQEVLQAA 459
Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Is essential for chloroplast development.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 1EC: 7EC: .EC: 1EC: .EC: 2
>sp|Q94B35|ISPH_ARATH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=ISPH PE=2 SV=1 Back     alignment and function description
>sp|Q5N249|ISPH_SYNP6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q31S64|ISPH_SYNE7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|B8HWD3|ISPH_CYAP4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q3M8X6|ISPH_ANAVT 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|P58674|ISPH_NOSS1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|B0C4N8|ISPH_ACAM1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|B1WTZ2|ISPH_CYAA5 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q8DK29|ISPH_THEEB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
224105455460 predicted protein [Populus trichocarpa] 1.0 0.8 0.847 0.0
189017050426 putative chloroplast 4-hydroxy-3-methylb 1.0 0.863 0.844 0.0
255556135466 4-hydroxy-3-methylbut-2-enyl diphosphate 1.0 0.789 0.844 0.0
164605002462 4-hydroxy-3-methylbut-2-enyl diphosphate 1.0 0.796 0.855 0.0
353453158455 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho 1.0 0.808 0.842 0.0
195928050462 4-hydroxy-3-methylbut-2-enyl diphosphate 1.0 0.796 0.85 0.0
356545301380 PREDICTED: 4-hydroxy-3-methylbut-2-enyl 1.0 0.968 0.836 0.0
356538819462 PREDICTED: 4-hydroxy-3-methylbut-2-enyl 1.0 0.796 0.834 0.0
114329246459 hydroxymethylbutenyl diphosphate reducta 1.0 0.801 0.839 0.0
343466165 470 4-hydroxy-3-methylbut-2-enyl diphosphate 1.0 0.782 0.842 0.0
>gi|224105455|ref|XP_002313816.1| predicted protein [Populus trichocarpa] gi|222850224|gb|EEE87771.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/380 (84%), Positives = 353/380 (92%), Gaps = 12/380 (3%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIKKLKENG+EYTWGNV VKLAE+YGFCWGVERAVQIAYEARKQFP++KIWI
Sbjct: 81  MNREYTSDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDKIWI 140

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM V+N+PVEEGKKQF+VVN GDVV+LPAFGAAV+EM+TL++KNV
Sbjct: 141 TNEIIHNPTVNKRLEEMEVENVPVEEGKKQFEVVNGGDVVILPAFGAAVDEMLTLSSKNV 200

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVWT+VEKHKKGDYTSIIHGKY+HEETVATASFAGKYIIVK+MKEA YV
Sbjct: 201 QIVDTTCPWVSKVWTTVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKDMKEAMYV 260

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGGELNGSSST+E FLEKFK AVSKGFDPD DLVK+GIANQTTMLKGETE+IGKLV
Sbjct: 261 CDYILGGELNGSSSTREEFLEKFKNAVSKGFDPDSDLVKLGIANQTTMLKGETEDIGKLV 320

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV------------ 288
           E+ MMRK+GVENVN+HFISFNTICDATQERQDAMYK+VEEK+DL+LVV            
Sbjct: 321 ERIMMRKYGVENVNDHFISFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQ 380

Query: 289 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKA 348
           EIAE  GIPSYWIDSE+RIGPGNKIAYKL HGELVEKENWLP+G ITIG+TSGASTPDK 
Sbjct: 381 EIAEHHGIPSYWIDSEQRIGPGNKIAYKLNHGELVEKENWLPQGPITIGVTSGASTPDKV 440

Query: 349 VEDVLKKVFEIKREEALQLA 368
           VED L KVF+IKR+EALQ+A
Sbjct: 441 VEDALIKVFDIKRDEALQVA 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|189017050|gb|ACD70402.1| putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556135|ref|XP_002519102.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative [Ricinus communis] gi|223541765|gb|EEF43313.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|164605002|dbj|BAF98297.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|353453158|gb|AER00471.1| 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Tanacetum parthenium] Back     alignment and taxonomy information
>gi|195928050|gb|ACG55683.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|356545301|ref|XP_003541082.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like [Glycine max] Back     alignment and taxonomy information
>gi|356538819|ref|XP_003537898.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like [Glycine max] Back     alignment and taxonomy information
>gi|114329246|gb|ABI64152.1| hydroxymethylbutenyl diphosphate reductase [Camptotheca acuminata] Back     alignment and taxonomy information
>gi|343466165|gb|AEM42976.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Siraitia grosvenorii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
TAIR|locus:2116164466 HDR "4-hydroxy-3-methylbut-2-e 1.0 0.789 0.789 1.7e-162
TIGR_CMR|NSE_0438303 NSE_0438 "4-hydroxy-3-methylbu 0.331 0.402 0.320 3.5e-17
TIGR_CMR|CJE_0973277 CJE_0973 "4-hydroxy-3-methylbu 0.388 0.516 0.258 8.9e-16
TIGR_CMR|VC_0685316 VC_0685 "hydroxymethylbutenyl 0.383 0.446 0.267 8.5e-15
UNIPROTKB|Q749Y8282 ispH "4-hydroxy-3-methylbut-2- 0.627 0.819 0.259 9.5e-15
TIGR_CMR|GSU_2604282 GSU_2604 "penicillin tolerance 0.627 0.819 0.259 9.5e-15
TIGR_CMR|ECH_0502319 ECH_0502 "hydroxymethylbutenyl 0.548 0.633 0.289 6.4e-14
UNIPROTKB|Q81LU9316 ispH "4-hydroxy-3-methylbut-2- 0.418 0.487 0.287 7.3e-14
TIGR_CMR|BA_4511316 BA_4511 "penicillin tolerance 0.418 0.487 0.287 7.3e-14
TIGR_CMR|CPS_1211309 CPS_1211 "4-hydroxy-3-methylbu 0.377 0.449 0.284 9e-14
TAIR|locus:2116164 HDR "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1582 (562.0 bits), Expect = 1.7e-162, P = 1.7e-162
 Identities = 300/380 (78%), Positives = 340/380 (89%)

Query:     1 MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
             MN+EYTSDI++ LK NG+ Y+WG+V VKLA++YGFCWGVERAVQIAYEARKQFPEE++WI
Sbjct:    87 MNREYTSDILETLKTNGYTYSWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPEERLWI 146

Query:    61 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
             TNEIIHNPTVNKRLE+M V+ IPVE+ KKQFDVV K DVV+LPAFGA V+EM  LN+K V
Sbjct:   147 TNEIIHNPTVNKRLEDMDVKIIPVEDSKKQFDVVEKDDVVILPAFGAGVDEMYVLNDKKV 206

Query:   121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
             QIVDTTCPWV+KVW +VEKHKKG+YTS+IHGKY+HEET+ATASFAGKYIIVKNMKEA YV
Sbjct:   207 QIVDTTCPWVTKVWNTVEKHKKGEYTSVIHGKYNHEETIATASFAGKYIIVKNMKEANYV 266

Query:   181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
             CDYILGG+ +GSSSTKE F+EKFK A+SKGFDPD DLVKVGIANQTTMLKGETEEIG+L+
Sbjct:   267 CDYILGGQYDGSSSTKEEFMEKFKYAISKGFDPDNDLVKVGIANQTTMLKGETEEIGRLL 326

Query:   241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV------------ 288
             E TMMRK+GVENV+ HFISFNTICDATQERQDA+Y++VEEK+DL+LVV            
Sbjct:   327 ETTMMRKYGVENVSGHFISFNTICDATQERQDAIYELVEEKIDLMLVVGGWNSSNTSHLQ 386

Query:   289 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKA 348
             EI+E RGIPSYWIDSEKRIGPGNKIAYKL +GELVEKEN+LPKG ITIG+TSGASTPDK 
Sbjct:   387 EISEARGIPSYWIDSEKRIGPGNKIAYKLHYGELVEKENFLPKGPITIGVTSGASTPDKV 446

Query:   349 VEDVLKKVFEIKREEALQLA 368
             VED L KVF+IKREE LQLA
Sbjct:   447 VEDALVKVFDIKREELLQLA 466
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=IEA;IGI;IEP;ISS
GO:0046677 "response to antibiotic" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity" evidence=IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0051745 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity" evidence=IGI
GO:0009507 "chloroplast" evidence=IDA
TIGR_CMR|NSE_0438 NSE_0438 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0973 CJE_0973 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0685 VC_0685 "hydroxymethylbutenyl pyrophosphate reductase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|Q749Y8 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2604 GSU_2604 "penicillin tolerance protein LytB" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0502 ECH_0502 "hydroxymethylbutenyl pyrophosphate reductase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
UNIPROTKB|Q81LU9 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4511 BA_4511 "penicillin tolerance protein LytB" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1211 CPS_1211 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q55643ISPH_SYNY31, ., 1, 7, ., 1, ., 20.58350.97550.9472N/Ano
P58674ISPH_NOSS11, ., 1, 7, ., 1, ., 20.59410.97550.8930yesno
B0JVA7ISPH_MICAN1, ., 1, 7, ., 1, ., 20.59940.96190.8805yesno
B7K4V8ISPH_CYAP81, ., 1, 7, ., 1, ., 20.58930.97010.8858yesno
Q31CR8ISPH_PROM91, ., 1, 7, ., 1, ., 20.55010.95100.8793yesno
B7KEG3ISPH_CYAP71, ., 1, 7, ., 1, ., 20.59150.97550.8930yesno
B2IZV5ISPH_NOSP71, ., 1, 7, ., 1, ., 20.58090.97550.8930yesno
B0C4N8ISPH_ACAM11, ., 1, 7, ., 1, ., 20.58570.98910.8771yesno
B8HWD3ISPH_CYAP41, ., 1, 7, ., 1, ., 20.62160.95380.8666yesno
Q10WA8ISPH_TRIEI1, ., 1, 7, ., 1, ., 20.55100.96190.8827yesno
Q7U9K4ISPH_SYNPX1, ., 1, 7, ., 1, ., 20.55670.95380.8796yesno
B1XPG7ISPH_SYNP21, ., 1, 7, ., 1, ., 20.59040.97280.8883yesno
A2BP63ISPH_PROMS1, ., 1, 7, ., 1, ., 20.55370.95920.8869yesno
A5GIF7ISPH_SYNPW1, ., 1, 7, ., 1, ., 20.55610.96730.8922yesno
Q7V329ISPH_PROMP1, ., 1, 7, ., 1, ., 20.54540.96460.8919yesno
A5GWG3ISPH_SYNR31, ., 1, 7, ., 1, ., 20.56570.97820.8866yesno
Q3M8X6ISPH_ANAVT1, ., 1, 7, ., 1, ., 20.59410.97550.8930yesno
B1WTZ2ISPH_CYAA51, ., 1, 7, ., 1, ., 20.62590.97550.8930yesno
A2CCK3ISPH_PROM31, ., 1, 7, ., 1, ., 20.53630.95920.8869yesno
Q3B080ISPH_SYNS91, ., 1, 7, ., 1, ., 20.54690.96190.8872yesno
Q7VDS2ISPH_PROMA1, ., 1, 7, ., 1, ., 20.54030.95920.8716yesno
Q46HB0ISPH_PROMT1, ., 1, 7, ., 1, ., 20.56030.95920.8802yesno
A9BDN6ISPH_PROM41, ., 1, 7, ., 1, ., 20.53960.97550.8886yesno
A2C096ISPH_PROM11, ., 1, 7, ., 1, ., 20.56030.95920.8802yesno
Q7V4T7ISPH_PROMM1, ., 1, 7, ., 1, ., 20.53900.95920.8869yesno
Q31S64ISPH_SYNE71, ., 1, 7, ., 1, ., 20.58710.96460.8919yesno
Q8DK29ISPH_THEEB1, ., 1, 7, ., 1, ., 20.61550.96190.8805yesno
Q94B35ISPH_ARATH1, ., 1, 7, ., 1, ., 20.78941.00.7896yesno
Q0IDE5ISPH_SYNS31, ., 1, 7, ., 1, ., 20.56180.96190.8894yesno
Q6AVG6ISPH_ORYSJ1, ., 1, 7, ., 1, ., 20.82101.00.8017yesno
Q5N249ISPH_SYNP61, ., 1, 7, ., 1, ., 20.58710.96460.8919yesno
Q7NG74ISPH_GLOVI1, ., 1, 7, ., 1, ., 20.51720.96190.8489yesno
Q3AN10ISPH_SYNSC1, ., 1, 7, ., 1, ., 20.55760.96190.8872yesno
A3PAY5ISPH_PROM01, ., 1, 7, ., 1, ., 20.55370.95920.8869yesno
A2BUP5ISPH_PROM51, ., 1, 7, ., 1, ., 20.54540.96460.8919yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.17.1.20.946
3rd Layer1.17.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
PLN02821460 PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-buten 0.0
PRK13371387 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl d 0.0
COG0761294 COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphos 5e-85
pfam02401280 pfam02401, LYTB, LytB protein 6e-82
TIGR00216280 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2 3e-75
PRK01045298 PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl dipho 4e-46
PRK00087 647 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d 3e-38
PRK12360281 PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl d 3e-36
>gnl|CDD|215440 PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Back     alignment and domain information 
 Score =  736 bits (1901), Expect = 0.0
 Identities = 309/380 (81%), Positives = 340/380 (89%), Gaps = 13/380 (3%)

Query: 1   MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIW 59
           M  EY TSD++K LKENG  YTWG+V VKLA++YGFCWGVERAVQIAYEARKQFP+EK+W
Sbjct: 81  MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLW 140

Query: 60  ITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKN 119
           ITNEIIHNPTVNKRLEEM VQ I VEEG K F VV +GDVV+LPAFGA+VEEM TLN+KN
Sbjct: 141 ITNEIIHNPTVNKRLEEMNVQFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKN 200

Query: 120 VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEY 179
           VQIVDTTCPWVSKVW +VEKHKK DYTS+IHGKY+HEETVATASFAGKYIIVKNMKEA Y
Sbjct: 201 VQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETVATASFAGKYIIVKNMKEATY 260

Query: 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKL 239
           VCDYILGG+L+GSS TKE FLEKFK AVSKGFDPD DLVKVGIANQTTMLKGETEEIGKL
Sbjct: 261 VCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKL 320

Query: 240 VEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV----------- 288
           +EKTMM+K+GVENVN+HF+SFNTICDATQERQDAMYK+VEEK+DL+LVV           
Sbjct: 321 LEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHL 380

Query: 289 -EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDK 347
            EIAE +GIPSYWIDSE+RIGPGN IA+KL HGELVEKENWLP+G +TIG+TSGASTPDK
Sbjct: 381 QEIAEHKGIPSYWIDSEERIGPGNTIAHKLNHGELVEKENWLPEGPVTIGVTSGASTPDK 440

Query: 348 AVEDVLKKVFEIKREEALQL 367
            VEDVL KVF+IKREEALQL
Sbjct: 441 VVEDVLDKVFDIKREEALQL 460

Length = 460
>gnl|CDD|237367 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>gnl|CDD|223832 COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|217018 pfam02401, LYTB, LytB protein Back     alignment and domain information
>gnl|CDD|232878 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>gnl|CDD|234893 PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>gnl|CDD|237075 PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 368
PLN02821460 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate red 100.0
PRK13371387 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
PRK12360281 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
TIGR00216280 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph 100.0
PRK01045298 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu 100.0
COG0761294 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate redu 100.0
PF02401281 LYTB: LytB protein; InterPro: IPR003451 Terpenes a 100.0
PRK00087 647 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
PF02401281 LYTB: LytB protein; InterPro: IPR003451 Terpenes a 95.89
PRK01045298 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu 92.64
TIGR00216280 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph 89.64
COG1587248 HemD Uroporphyrinogen-III synthase [Coenzyme metab 88.03
PRK12360281 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 88.0
PF02602231 HEM4: Uroporphyrinogen-III synthase HemD; InterPro 85.24
PRK08057248 cobalt-precorrin-6x reductase; Reviewed 80.07
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Back     alignment and domain information 
Probab=100.00  E-value=1.8e-111  Score=849.87  Aligned_cols=367  Identities=84%  Similarity=1.304  Sum_probs=352.5

Q ss_pred             CCccc-cchHHHHHHhcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCc
Q 017615            1 MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV   79 (368)
Q Consensus         1 ~~~~y-~~~~~~~~~~~~~~~~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV   79 (368)
                      |.++| +|+||+.||++|+.+.||.|+|+||+++||||||+|||++|+++++.+++++||++|||||||+|+++|+++||
T Consensus        81 ~~~~y~~s~li~~~r~~~~~~~~g~m~I~LA~~~GFC~GVeRAV~~A~ea~~~~p~~~Iy~lgeIIHNp~Vv~~L~~~GV  160 (460)
T PLN02821         81 MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNV  160 (460)
T ss_pred             hhhhhhccHHHHHHHhCCCeEEecceEEEEeCCCCCCccHHHHHHHHHHHHhhCCCCCeEEecCCccCHHHHHHHHHCCC
Confidence            56888 99999999999999999999999999999999999999999999887767899999999999999999999999


Q ss_pred             EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCccee
Q 017615           80 QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV  159 (368)
Q Consensus        80 ~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~  159 (368)
                      +++++.++..+++++++|++|||||||+||++++.|+++|++|||||||||+|+|+.|++++++||++||+|+++||||+
T Consensus       161 ~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~IVDaTCP~V~KV~~~v~k~~k~gy~iII~Gk~~HpEv~  240 (460)
T PLN02821        161 QFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETV  240 (460)
T ss_pred             EEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCcchHHHHHHHHHHHhCCCEEEEECCCCCccee
Confidence            99987666667899998999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccCCcEEEEcChhhHHHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHH
Q 017615          160 ATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKL  239 (368)
Q Consensus       160 gi~g~a~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~  239 (368)
                      ||.||+++++||++++|++++++||.+|++||++++++.|+++|++++|++|||+.+++|+++++||||+.++|++|++.
T Consensus       241 gt~s~a~~~~VV~~~~ea~~v~~yi~~~~~~~~~~~~~~f~~~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~~~  320 (460)
T PLN02821        241 ATASFAGKYIIVKNMKEATYVCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKL  320 (460)
T ss_pred             ecccccCCeEEECCHHHHHHHhhhcccccccccccchhhhhhhhcccccccCCcccccccEEEEECCCCcHHHHHHHHHH
Confidence            99999988999999999999999999999999999999999999999999999877788999999999999999999999


Q ss_pred             HHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe------------hhhhccCCCeEEeCCCCCc
Q 017615          240 VEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV------------EIAEDRGIPSYWIDSEKRI  307 (368)
Q Consensus       240 l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV------------eia~~~~~~t~~Ie~~~eL  307 (368)
                      |+++|+++++|++.+.||.+|||||+||++||+|+++|+++++|+||||            |||++.|+||||||+++||
T Consensus       321 l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI  400 (460)
T PLN02821        321 LEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERI  400 (460)
T ss_pred             HHHhhhhhcCCcccCccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHc
Confidence            9999999999988889999999999999999999999964689999999            9999999999999999999


Q ss_pred             CCCCcchhhhccchhhhhcccccCCCcEEEEeecCCCcHHHHHHHHHHHHhhhhhhhhhc
Q 017615          308 GPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQL  367 (368)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~VGITAGASTP~~lI~eVi~~l~~~~~~~~~~~  367 (368)
                      ++.+.|+|++.|+|..++++||+.+..+||||||||||||+|++|+.+|.+++..+++|+
T Consensus       401 ~~~~~i~h~~~~~e~~~~~~wl~~~~~~VGITAGASTPd~lIeeVi~~l~~~~~~~~~~~  460 (460)
T PLN02821        401 GPGNTIAHKLNHGELVEKENWLPEGPVTIGVTSGASTPDKVVEDVLDKVFDIKREEALQL  460 (460)
T ss_pred             CcccccccccccchhhhhHHHhccCCCEEEEecCCCCCHHHHHHHHHHHHHhhccccccC
Confidence            999999999999999999999976789999999999999999999999999988888775

>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism] Back     alignment and domain information
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids Back     alignment and domain information
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids Back     alignment and domain information
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] Back     alignment and domain information
>PRK08057 cobalt-precorrin-6x reductase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
3dnf_A297 Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diph 2e-20
4eb3_A327 Crystal Structure Of Isph In Complex With Iso-hmbpp 7e-15
4h4c_A323 Isph In Complex With (e)-4-fluoro-3-methylbut-2-eny 7e-15
3urk_A324 Isph In Complex With Propynyl Diphosphate (1061) Le 7e-15
3f7t_A328 Structure Of Active Isph Shows A Novel Fold With A 8e-15
3szu_A328 Isph:hmbpp Complex Structure Of E126q Mutant Length 2e-14
3t0f_A328 Isph:hmbpp (Substrate) Structure Of The E126d Mutan 2e-14
3t0g_A328 Isph:hmbpp (Substrate) Structure Of The T167c Mutan 3e-14
3zgl_A332 Crystal Structures Of Escherichia Coli Isph In Comp 5e-14
3ke8_A326 Crystal Structure Of Isph:hmbpp-Complex Length = 32 5e-14
>pdb|3DNF|A Chain A, Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diphosphate Reductase, The Terminal Enzyme Of The Non-mevalonate Pathway Length = 297 Back     alignment and structure 
Iteration: 1

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 162/341 (47%), Gaps = 67/341 (19%)
Query: 25  VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
           V + +AE  GFC+GV+RAV++A E+ K+  + K++    IIHNP    RL+ + V     
Sbjct: 2   VDIIIAEHAGFCFGVKRAVKLAEESLKE-SQGKVYTLGPIIHNPQEVNRLKNLGVFPSQG 60
Query: 85  EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
           EE K+       GD V++ + G   E+   L  K ++++D TCP+V  V  +V +  +  
Sbjct: 61  EEFKE-------GDTVIIRSHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREG 113
Query: 145 YTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFL 200
           Y  ++ G+ +H E + T  +     GK I+V+ +++              G +   E   
Sbjct: 114 YFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDI-------------GEALKHE--- 157
Query: 201 EKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISF 260
                             +VGI  QTT    + EE  K V   +     V+ V       
Sbjct: 158 ------------------RVGIVAQTT----QNEEFFKEVVGEIA--LWVKEVK----VI 189
Query: 261 NTICDATQERQDAMYKMVEEKVDLILVVEIAEDRGIPS--YWIDSEKRIGPGNKIAYKLM 318
           NTIC+AT  RQ+++ K+  E VD+++++   ++ G     Y+I  E      N   Y + 
Sbjct: 190 NTICNATSLRQESVKKLAPE-VDVMIIIG-GKNSGNTRRLYYISKEL-----NPNTYHIE 242
Query: 319 HGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 359
             E ++ E W  +G   +GI++GASTPD  +E V  ++ EI
Sbjct: 243 TAEELQPE-WF-RGVKRVGISAGASTPDWIIEQVKSRIQEI 281
>pdb|4EB3|A Chain A, Crystal Structure Of Isph In Complex With Iso-hmbpp Length = 327 Back     alignment and structure
>pdb|4H4C|A Chain A, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl Diphosphate Length = 323 Back     alignment and structure
>pdb|3URK|A Chain A, Isph In Complex With Propynyl Diphosphate (1061) Length = 324 Back     alignment and structure
>pdb|3F7T|A Chain A, Structure Of Active Isph Shows A Novel Fold With A [3fe-4s] Cluster In The Catalytic Centre Length = 328 Back     alignment and structure
>pdb|3SZU|A Chain A, Isph:hmbpp Complex Structure Of E126q Mutant Length = 328 Back     alignment and structure
>pdb|3T0F|A Chain A, Isph:hmbpp (Substrate) Structure Of The E126d Mutant Length = 328 Back     alignment and structure
>pdb|3T0G|A Chain A, Isph:hmbpp (Substrate) Structure Of The T167c Mutant Length = 328 Back     alignment and structure
>pdb|3ZGL|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex With Ambpp A Potent Inhibitor Of The Methylerythritol Phosphate Pathway Length = 332 Back     alignment and structure
>pdb|3KE8|A Chain A, Crystal Structure Of Isph:hmbpp-Complex Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
3dnf_A297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 7e-51
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 3e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Length = 297 Back     alignment and structure
 Score =  170 bits (434), Expect = 7e-51
 Identities = 83/354 (23%), Positives = 157/354 (44%), Gaps = 87/354 (24%)

Query: 26  KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85
            + +AE  GFC+GV+RAV++A E+ K+  + K++    IIHNP    RL+ + V      
Sbjct: 3   DIIIAEHAGFCFGVKRAVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVF---PS 58

Query: 86  EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145
           +     +   +GD V++ + G   E+   L  K ++++D TCP+V  V  +V +  +  Y
Sbjct: 59  Q----GEEFKEGDTVIIRSHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGY 114

Query: 146 TSIIHGKYSHEETVATA----SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLE 201
             ++ G+ +H E + T     +  GK I+V+ +++           E             
Sbjct: 115 FVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIG---------EAL----------- 154

Query: 202 KFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFN 261
                       +    +VGI  QTT  +   +E+   V + +          +     N
Sbjct: 155 ----------KHE----RVGIVAQTTQNEEFFKEV---VGE-IALWV------KEVKVIN 190

Query: 262 TICDATQERQDAMYKMVEEKVDLILVV------------EIAEDRGIPSYWIDSEKRIGP 309
           TIC+AT  RQ+++ K+  E VD+++++             I+++    +Y I++ + +  
Sbjct: 191 TICNATSLRQESVKKLAPE-VDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEEL-- 247

Query: 310 GNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREE 363
                          +  W  +G   +GI++GASTPD  +E V  ++ EI   +
Sbjct: 248 ---------------QPEWF-RGVKRVGISAGASTPDWIIEQVKSRIQEICEGQ 285
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Length = 328 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
3dnf_A297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 100.0
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 100.0
3dnf_A297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 93.52
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 91.81
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Back     alignment and structure
Probab=100.00  E-value=9.6e-94  Score=692.49  Aligned_cols=268  Identities=30%  Similarity=0.526  Sum_probs=249.3

Q ss_pred             ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEc
Q 017615           24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP  103 (368)
Q Consensus        24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIr  103 (368)
                      .|+|+||+++||||||+|||++|+++++++ ++|||++|||||||+|+++|+++|+.|+++       +++|+|++||||
T Consensus         1 ~m~I~lA~~~GFC~GV~RAI~~a~~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~v~~-------~ev~~g~~VIir   72 (297)
T 3dnf_A            1 MVDIIIAEHAGFCFGVKRAVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVFPSQG-------EEFKEGDTVIIR   72 (297)
T ss_dssp             CCEEEECTTCSSCHHHHHHHHHHHHHTTTC-CSCEEESSCSSSCHHHHHHHHHHTEEECCS-------SCCCTTCEEEEC
T ss_pred             CeEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCEEEeCCcccCHHHHHHHHhCCCEEech-------hhCCCCCEEEEE
Confidence            489999999999999999999999999876 478999999999999999999999999973       678889999999


Q ss_pred             CCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccC---C-cEEEEcChhhHHH
Q 017615          104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA---G-KYIIVKNMKEAEY  179 (368)
Q Consensus       104 AHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a---~-~~~vv~~~~e~~~  179 (368)
                      |||+||+++++|+++|++|||||||+|+|+|+.|++++++||+|||+|+++||||+|+.||+   + +++||++++|++.
T Consensus        73 AHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~  152 (297)
T 3dnf_A           73 SHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGE  152 (297)
T ss_dssp             TTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGG
T ss_pred             CCCCCHHHHHHHHHCCCEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999   4 6899999999987


Q ss_pred             hhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc
Q 017615          180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS  259 (368)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~  259 (368)
                      |.                                  .++++++++|||||.++|++|+++|+++    |      +++.+
T Consensus       153 l~----------------------------------~~~kv~~vsQTT~s~~~~~~iv~~L~~r----~------p~~~~  188 (297)
T 3dnf_A          153 AL----------------------------------KHERVGIVAQTTQNEEFFKEVVGEIALW----V------KEVKV  188 (297)
T ss_dssp             GG----------------------------------GCSEEEEEECTTCCHHHHHHHHHHHHHH----S------SEEEE
T ss_pred             cC----------------------------------CCCcEEEEEecCCcHHHHHHHHHHHHHh----C------CCCCC
Confidence            51                                  1258999999999999999999999863    2      35778


Q ss_pred             cCcccHHHHHHHHHHHHhhhhcCCEEEEe------------hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcc
Q 017615          260 FNTICDATQERQDAMYKMVEEKVDLILVV------------EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKEN  327 (368)
Q Consensus       260 ~nTIC~AT~~RQ~a~~eLa~~~vD~miVV------------eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~  327 (368)
                      +|||||||++||+|+++|| +++|+||||            |+|++.|++|||||+++||++                 +
T Consensus       189 ~~tIC~AT~~RQ~av~~la-~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~-----------------~  250 (297)
T 3dnf_A          189 INTICNATSLRQESVKKLA-PEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP-----------------E  250 (297)
T ss_dssp             ECCCCSHHHHHHHHHHHHG-GGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCG-----------------G
T ss_pred             CCCccHHHHHHHHHHHHHH-hhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCH-----------------H
Confidence            9999999999999999998 699999999            999999999999999999999                 9


Q ss_pred             cccCCCcEEEEeecCCCcHHHHHHHHHHHHhhhhh
Q 017615          328 WLPKGQITIGITSGASTPDKAVEDVLKKVFEIKRE  362 (368)
Q Consensus       328 ~l~~~~~~VGITAGASTP~~lI~eVi~~l~~~~~~  362 (368)
                      || .++.+||||||||||+|||+||+++|+++...
T Consensus       251 wl-~~~~~VGITAGASTP~~li~eVi~~l~~~~~~  284 (297)
T 3dnf_A          251 WF-RGVKRVGISAGASTPDWIIEQVKSRIQEICEG  284 (297)
T ss_dssp             GG-TTCSEEEEEECTTCCHHHHHHHHHHHHHC---
T ss_pred             Hh-CCCCEEEEeecCCCCHHHHHHHHHHHHHhccC
Confidence            99 68999999999999999999999999987544
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Back     alignment and structure
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Back     alignment and structure
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00