Citrus Sinensis ID: 017743
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SV96 | 563 | Pentatricopeptide repeat- | yes | no | 0.956 | 0.621 | 0.754 | 1e-160 | |
| Q9SQU6 | 486 | Pentatricopeptide repeat- | no | no | 0.920 | 0.693 | 0.283 | 5e-39 | |
| Q9SCP4 | 447 | Pentatricopeptide repeat- | no | no | 0.926 | 0.758 | 0.284 | 5e-39 | |
| Q9FKC3 | 508 | Pentatricopeptide repeat- | no | no | 0.879 | 0.633 | 0.287 | 3e-37 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.926 | 0.393 | 0.269 | 3e-36 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.904 | 0.404 | 0.260 | 1e-32 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.868 | 0.528 | 0.291 | 3e-32 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.838 | 0.495 | 0.267 | 2e-31 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.849 | 0.506 | 0.277 | 2e-30 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.852 | 0.493 | 0.256 | 2e-30 |
| >sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 563 bits (1452), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/350 (75%), Positives = 301/350 (86%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQKQRWYI D G+YSKLI+VMGKKGQTR+AMWLFSEM+NSGCRPD SVYNALITAHLHTR
Sbjct: 123 MQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTR 182
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
DKAKAL K GY KMKG+ERC+PN+VTYNILLRA AQ+ VDQVNALFK+L S ++PD
Sbjct: 183 DKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPD 242
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
+YT+NGVMDAYGKNGMIKEME+VL+RM+SN+CKPDIITFN+LIDSYGK+Q F+KMEQ FK
Sbjct: 243 VYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFK 302
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
SLM SKEKPTLPTFNSMIINYGKAR+ KAE+VF+KM M Y PSFITYEC+I MYGYC
Sbjct: 303 SLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCG 362
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
+VSRAREIF+E+ + + +K STLNAMLE YC NGL EAD LF N+ V PD+STYK
Sbjct: 363 SVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYK 422
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
LYKAYTKA+MKE VQ L+K+ME++GIVPNKRFFLEALE F S L GS S
Sbjct: 423 FLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVFGSRLPGSGS 472
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May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 167/342 (48%), Gaps = 5/342 (1%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
+++Q +Y G Y KL+ ++GK GQ A LF EM G P +Y AL+ A+
Sbjct: 114 LREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYT--- 170
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
++ + A KMK +C+P++ TY+ LL+AC A D V++L+KE+ E ++ P+
Sbjct: 171 -RSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPN 229
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
T N V+ YG+ G +ME VLS M S CKPD+ T N+++ +G D ME +
Sbjct: 230 TVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWY 289
Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
+ + +P TFN +I +YGK R+ K V + M +++ + TY II +
Sbjct: 290 EKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADV 349
Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
+ FD++ G T ++ Y GL + + + + +++ Y
Sbjct: 350 GDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFY 409
Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
+ A KA+ ++++ RM++ V + R F +E +
Sbjct: 410 NAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAY 451
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 169/344 (49%), Gaps = 5/344 (1%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
++KQ WY Y+KL V+G Q A LF M + G +P VY +LI+ +
Sbjct: 84 LRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVY---- 139
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
K++ L KA + MK + CKP++ T+ +L+ C + D V ++ E+ +
Sbjct: 140 GKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCS 199
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
TYN ++D YGK GM +EMESVL+ M + PD+ T N +I SYG + KME +
Sbjct: 200 TVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWY 259
Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
+P + TFN +I+++GKA + K V M ++ + +TY +I +G
Sbjct: 260 SRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKA 319
Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
+ + ++F ++ G T +++ AY GL + D + N V D+ +
Sbjct: 320 GRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFF 379
Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
+ AY +A +++L +ME+ P+K F ++T+++
Sbjct: 380 NCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTA 423
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/362 (28%), Positives = 167/362 (46%), Gaps = 40/362 (11%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
+++Q WY + GIY KLI ++GK Q A LF EM N GC + VY AL++A+
Sbjct: 140 LREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAY---- 195
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
++ A ++MK C+P++ TY+IL+++ Q D+V L ++ + P+
Sbjct: 196 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPN 255
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPD------------------------ 155
TYN ++DAYGK M EMES L +M + CKPD
Sbjct: 256 TITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCY 315
Query: 156 -----------IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
I TFN+L+DSYGK + KM V + + T+ T+N +I +G+A
Sbjct: 316 EKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRA 375
Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
+ EY+F+ M + + PS +T ++ YG + + + + +
Sbjct: 376 GDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFF 435
Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
N +++AY E + E G PD TY+ + KAY + M V++L +E
Sbjct: 436 NCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVES 495
Query: 325 NG 326
G
Sbjct: 496 VG 497
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 168/345 (48%), Gaps = 6/345 (1%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQ+Q W + IY+ +I+++G++G + +F EM + G Y ALI A+
Sbjct: 131 MQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAY---- 186
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
+ +L +MK E+ P+I+TYN ++ ACA+ + + + LF E+ + P
Sbjct: 187 GRNGRYETSLELLDRMKN-EKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQP 245
Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
DI TYN ++ A G+ E E V M PD+ T++ L++++GK + +K+ +
Sbjct: 246 DIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLL 305
Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
+ P + ++N ++ Y K+ +A VF +M A TP+ TY ++ ++G
Sbjct: 306 GEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQS 365
Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
R++F E+ D +T N ++E + G E LF + + PD TY
Sbjct: 366 GRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETY 425
Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
+ + A K + E +K+L+ M N IVP+ + + +E F +
Sbjct: 426 EGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 470
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Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 155/342 (45%), Gaps = 11/342 (3%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y+ LI+ G+ R A+ +F +M GC+P YN ++ K
Sbjct: 207 DVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVF---GKMGTPWNKI 263
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
+KMK + P+ TYN L+ C + + +F+E+ + + D TYN ++D
Sbjct: 264 TSLVEKMKS-DGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLD 322
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
YGK+ KE VL+ M N P I+T+N LI +Y + D+ ++ + KP
Sbjct: 323 VYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKP 382
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
+ T+ +++ + +A A +F++M P+ T+ I MYG + +IF
Sbjct: 383 DVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442
Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
DE++ G + T N +L + NG+ +E +F+ G P+ T+ L AY++
Sbjct: 443 DEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502
Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
E + +RM G+ P+ L T+++ LA G
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPD-------LSTYNTVLAALARG 537
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 158/333 (47%), Gaps = 15/333 (4%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
++R AD YS +I + + G A+ LF EM G + YN+L+ K
Sbjct: 220 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC----K 275
Query: 63 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
A + M E PN++T+N+LL + + + N L+KE+ ++P+I
Sbjct: 276 AGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334
Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
TYN +MD Y + E ++L M N+C PDI+TF LI Y + D +VF+++
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNI 394
Query: 183 MHSKEKPTLPTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
T++ ++ + GK +L AE +FQ+M + P +TY I + G C
Sbjct: 395 SKRGLVANAVTYSILVQGFCQSGKIKL---AEELFQEMVSHGVLPDVMTYG--ILLDGLC 449
Query: 240 DN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
DN + +A EIF++L K D+ + ++E C G +A LF + GV P+
Sbjct: 450 DNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVM 509
Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
TY ++ K LL++ME++G PN
Sbjct: 510 TYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 158/322 (49%), Gaps = 15/322 (4%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKALAKAL 70
YS +I + K G A+ LF+EM G + D Y++LI + D AK L + +
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307
Query: 71 GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
G P++VT++ L+ + + + L+ E+ +APD TYN ++D
Sbjct: 308 G--------RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDG 359
Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
+ K + E + M S C+PDI+T+++LI+SY K + D ++F+ + P
Sbjct: 360 FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 419
Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
T+N++++ + ++ A+ +FQ+M + PS +TY I + G CDN +++A EI
Sbjct: 420 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG--ILLDGLCDNGELNKALEI 477
Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
F+++ K + + N ++ C +A LF + + GV PD TY ++ K
Sbjct: 478 FEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCK 537
Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
L ++M+++G P+
Sbjct: 538 KGSLSEADMLFRKMKEDGCTPD 559
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 162/328 (49%), Gaps = 17/328 (5%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKA 65
AD IYS +I + K A+ LF+EM N G RPD Y++LI+ + D ++
Sbjct: 238 ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L+ L + PN+VT+N L+ A A+ + + LF E+ + + P+I TYN
Sbjct: 298 LSDMLE--------RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYN 349
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMH 184
+++ + + + E + + + M S C PD++T+N LI+ + K ++ D ME +F+ +
Sbjct: 350 SLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGME-LFRDMSR 408
Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--V 242
T+ ++I + +A A+ VF++M + P+ +TY ++ G C N +
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLD--GLCKNGKL 466
Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
+A +F+ L K + + T N M E C G + LF + GV PD Y +
Sbjct: 467 EKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTM 526
Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
+ K +KE L +M+++G +P+
Sbjct: 527 ISGFCKKGLKEEAYTLFIKMKEDGPLPD 554
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 165/327 (50%), Gaps = 15/327 (4%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKA 65
AD IY+ +I + K A+ LF+EM N G RPD Y++LI+ + D ++
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L+ + + PN+VT++ L+ A + + + L+ E+ + + PDI+TY+
Sbjct: 316 LSDMIE--------RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 367
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
+++ + + + E + + M S C P+++T++ LI + K + ++ ++F+ +
Sbjct: 368 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQR 427
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 243
T+ ++I + +AR A+ VF++M ++ P+ +TY I + G C N ++
Sbjct: 428 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYN--ILLDGLCKNGKLA 485
Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
+A +F+ L + + + T N M+E C G + LF N GV+P+ Y +
Sbjct: 486 KAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMI 545
Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
+ + KE LLK+M+++G +PN
Sbjct: 546 SGFCRKGSKEEADSLLKKMKEDGPLPN 572
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | ||||||
| 255582522 | 478 | pentatricopeptide repeat-containing prot | 0.969 | 0.742 | 0.787 | 1e-171 | |
| 356511125 | 503 | PREDICTED: pentatricopeptide repeat-cont | 0.972 | 0.707 | 0.758 | 1e-163 | |
| 356528509 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.972 | 0.613 | 0.761 | 1e-163 | |
| 225438599 | 489 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.748 | 0.775 | 1e-163 | |
| 224081220 | 416 | predicted protein [Populus trichocarpa] | 0.923 | 0.812 | 0.769 | 1e-159 | |
| 15235161 | 563 | pentatricopeptide repeat-containing prot | 0.956 | 0.621 | 0.754 | 1e-158 | |
| 334187332 | 510 | pentatricopeptide repeat-containing prot | 0.956 | 0.686 | 0.754 | 1e-158 | |
| 449451631 | 528 | PREDICTED: pentatricopeptide repeat-cont | 0.972 | 0.674 | 0.731 | 1e-151 | |
| 449525698 | 494 | PREDICTED: pentatricopeptide repeat-cont | 0.939 | 0.696 | 0.755 | 1e-150 | |
| 125541147 | 482 | hypothetical protein OsI_08951 [Oryza sa | 0.740 | 0.562 | 0.720 | 1e-150 |
| >gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust.
Identities = 281/357 (78%), Positives = 328/357 (91%), Gaps = 2/357 (0%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQKQRWYIAD+G+YSKLI+VMGKKGQTR+AMWLFSEMRNSGCRPD SVYNALITAHLH++
Sbjct: 122 MQKQRWYIADSGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDSSVYNALITAHLHSK 181
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
DKAKAL KALGYF+KMKGM+RC+PN+VTYNILLRA AQARNV+QVNALFK+L +SI++PD
Sbjct: 182 DKAKALIKALGYFEKMKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSIVSPD 241
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
IYTYNGVMDAYGKNGMI+EMESVLSRMKSNQCKPDIITFNLLIDSYGK+Q FDKMEQVFK
Sbjct: 242 IYTYNGVMDAYGKNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFK 301
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
SL+HSKE+PTLPTFNSMI NYGKAR + AE V QKMT MKYTP+FITYE +I MYG+CD
Sbjct: 302 SLLHSKERPTLPTFNSMITNYGKARQKENAESVLQKMTKMKYTPNFITYESLIMMYGFCD 361
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
+VS+AREIFD++ + GK++KVSTLNAML+ YC+NGLP EADLLF+N+ N+G+ PDS+TYK
Sbjct: 362 SVSKAREIFDDMIESGKEVKVSTLNAMLDVYCLNGLPMEADLLFDNARNVGLLPDSTTYK 421
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS--SLAGSQSGSAKT 355
LLYKAYTKANMK+LVQKLLK M+++GI+PNKRFFL+AL F S + +G+Q +AKT
Sbjct: 422 LLYKAYTKANMKKLVQKLLKHMDRDGIIPNKRFFLDALGAFKSLPASSGNQQNNAKT 478
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511125|ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 270/356 (75%), Positives = 317/356 (89%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQKQRWYIAD GIYSKLI+VMGKKGQTR+AMWLFSEMRN+GCRPD SVYNALITAHLH+R
Sbjct: 99 MQKQRWYIADNGIYSKLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLHSR 158
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
DK KALAKA+GYFQKMKGMERCKPNIVTYNILLRA AQARNV+QVN+LFK+L ESI++PD
Sbjct: 159 DKTKALAKAIGYFQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPD 218
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
IYT+NGVMDAYGKNGMI+EME+VL+RMKSNQCKPD+ITFNLLIDSYGK+Q F KMEQVFK
Sbjct: 219 IYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQEFGKMEQVFK 278
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
SL+ SKE+ +LPTFNSMI+NYGKARL+ KAE VF++MT M YTPSF+T+E +I MYG+CD
Sbjct: 279 SLLRSKERASLPTFNSMILNYGKARLKDKAEDVFKRMTDMGYTPSFVTHESLIYMYGFCD 338
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
VSRA ++FDEL + +KVSTLNAML+ YC+NGLP EAD LFE ++++ + PDSST+K
Sbjct: 339 CVSRAAQLFDELVESKAHIKVSTLNAMLDVYCINGLPQEADSLFERANSIKIYPDSSTFK 398
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
LLYKAYTKAN KEL+ KLLK M+++GIVPNKRFFL+AL +S A S+S +A TD
Sbjct: 399 LLYKAYTKANQKELLDKLLKHMDKDGIVPNKRFFLDALGAVASLPANSESANAATD 454
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528509|ref|XP_003532845.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 271/356 (76%), Positives = 317/356 (89%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQKQRWYIAD GIYSKLI+VMGKKGQTR+AMWLFSEMRN+GCRPD SVYNALITAHL +R
Sbjct: 162 MQKQRWYIADNGIYSKLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLRSR 221
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
DK KALAKA+GYFQKMKGMERCKPNIVTYNILLRA AQARNV+QVN+LFK+L ESI++PD
Sbjct: 222 DKIKALAKAIGYFQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPD 281
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
IYT+NGVMDAYGKNGMI+EME+VL+RMKSNQCKPD+ITFNLLIDSYGK+QAF KMEQVFK
Sbjct: 282 IYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQAFGKMEQVFK 341
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
SL+HSKE+P+LPTFNSMI+NYGKARL+ KAE VF+KMT M YT SF+T+E +I MYG+CD
Sbjct: 342 SLLHSKERPSLPTFNSMILNYGKARLKDKAEDVFKKMTDMGYTLSFVTHESMIYMYGFCD 401
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
VSRA ++FDEL + +KVSTLNAML+ YC+NGLP EAD LFE + ++ + PDSST+K
Sbjct: 402 CVSRAAQLFDELVESKVHIKVSTLNAMLDVYCLNGLPQEADSLFERAISIKIHPDSSTFK 461
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
LLYKAYTKAN KEL+ KLLK M+++GI+PNKRFFL+AL +S A S+S +A TD
Sbjct: 462 LLYKAYTKANQKELLDKLLKHMDKDGIIPNKRFFLDALGAVASLPANSESANAATD 517
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Vitis vinifera] gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 284/366 (77%), Positives = 319/366 (87%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQKQRWYIAD G+YSKLI+VMGKKGQTR+AMWLFSEMRNSGCRPD SVYNALITAHLH+R
Sbjct: 124 MQKQRWYIADNGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSR 183
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
DK+KAL KALGYF KMKGMERCKPNIVTYNILLRA AQA+NV+Q NALFKEL+ESI++PD
Sbjct: 184 DKSKALIKALGYFDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPD 243
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
I+T+NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN+LIDSYG+RQ FDKMEQVFK
Sbjct: 244 IFTFNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFK 303
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
SL+ SKEKPTLPTFNSMI NYGKARL+ KAE VF+KMT M Y P+FITYE +I MYG+CD
Sbjct: 304 SLLRSKEKPTLPTFNSMITNYGKARLKEKAENVFKKMTDMGYAPNFITYESLIMMYGFCD 363
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
+SRAREIFDE+ K+MKVSTLNAMLE YCMNGLP EADLL E + P SSTYK
Sbjct: 364 CISRAREIFDEMMASKKEMKVSTLNAMLEVYCMNGLPMEADLLLERARKNRPFPGSSTYK 423
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRS 360
LLYKAYTKA+ KEL++KLLK M+ +GI+PNKRFFLEAL F SS A +S + T LTR
Sbjct: 424 LLYKAYTKADQKELLEKLLKLMDSDGILPNKRFFLEALGAFGSSPASQESAGSTTGLTRP 483
Query: 361 LSTAKS 366
++AK+
Sbjct: 484 RNSAKT 489
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081220|ref|XP_002306340.1| predicted protein [Populus trichocarpa] gi|222855789|gb|EEE93336.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 260/338 (76%), Positives = 307/338 (90%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQKQRWY+AD G YSKLI+VMGKKGQTR+AMWLFSEMRNSGCRPD SVYNALITAHLH++
Sbjct: 79 MQKQRWYVADNGCYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSK 138
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
DKAK+L KAL YF+KMK +ERC+PN+VTYNI+LRA AQARNV+QVNALFK+L ESI++PD
Sbjct: 139 DKAKSLTKALAYFEKMKSIERCQPNVVTYNIILRAFAQARNVNQVNALFKDLEESIVSPD 198
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
IYTYNGV+DAYGKNGMI+EMESVLSRMK +QCKPDIITFNLLIDSYGK+Q F+KMEQVFK
Sbjct: 199 IYTYNGVLDAYGKNGMIREMESVLSRMKIDQCKPDIITFNLLIDSYGKKQDFEKMEQVFK 258
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
SL+ SKEKPTLPTFNSMI+NYGKARL+ KAE VF+KM M+YTPSFIT+E +I MYG CD
Sbjct: 259 SLLRSKEKPTLPTFNSMIVNYGKARLKDKAESVFKKMADMRYTPSFITFESLIMMYGICD 318
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
VS+AR+IFD++ + GK++KVSTLNA+L YCMNGL EA +L EN+ ++GV P+SSTYK
Sbjct: 319 CVSKARDIFDDMVESGKEVKVSTLNAVLNVYCMNGLHMEAHILLENARSIGVPPNSSTYK 378
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
LLY+AYTKA MKELVQKLLK M+++GI+PNKRFF++AL
Sbjct: 379 LLYRAYTKAKMKELVQKLLKHMDKDGIIPNKRFFVDAL 416
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39620, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2453; Flags: Precursor gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana] gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana] gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana] gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 264/350 (75%), Positives = 301/350 (86%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQKQRWYI D G+YSKLI+VMGKKGQTR+AMWLFSEM+NSGCRPD SVYNALITAHLHTR
Sbjct: 123 MQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTR 182
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
DKAKAL K GY KMKG+ERC+PN+VTYNILLRA AQ+ VDQVNALFK+L S ++PD
Sbjct: 183 DKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPD 242
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
+YT+NGVMDAYGKNGMIKEME+VL+RM+SN+CKPDIITFN+LIDSYGK+Q F+KMEQ FK
Sbjct: 243 VYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFK 302
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
SLM SKEKPTLPTFNSMIINYGKAR+ KAE+VF+KM M Y PSFITYEC+I MYGYC
Sbjct: 303 SLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCG 362
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
+VSRAREIF+E+ + + +K STLNAMLE YC NGL EAD LF N+ V PD+STYK
Sbjct: 363 SVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYK 422
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
LYKAYTKA+MKE VQ L+K+ME++GIVPNKRFFLEALE F S L GS S
Sbjct: 423 FLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVFGSRLPGSGS 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust.
Identities = 264/350 (75%), Positives = 301/350 (86%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQKQRWYI D G+YSKLI+VMGKKGQTR+AMWLFSEM+NSGCRPD SVYNALITAHLHTR
Sbjct: 123 MQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTR 182
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
DKAKAL K GY KMKG+ERC+PN+VTYNILLRA AQ+ VDQVNALFK+L S ++PD
Sbjct: 183 DKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPD 242
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
+YT+NGVMDAYGKNGMIKEME+VL+RM+SN+CKPDIITFN+LIDSYGK+Q F+KMEQ FK
Sbjct: 243 VYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFK 302
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
SLM SKEKPTLPTFNSMIINYGKAR+ KAE+VF+KM M Y PSFITYEC+I MYGYC
Sbjct: 303 SLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCG 362
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
+VSRAREIF+E+ + + +K STLNAMLE YC NGL EAD LF N+ V PD+STYK
Sbjct: 363 SVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYK 422
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
LYKAYTKA+MKE VQ L+K+ME++GIVPNKRFFLEALE F S L GS S
Sbjct: 423 FLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVFGSRLPGSGS 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 264/361 (73%), Positives = 308/361 (85%), Gaps = 5/361 (1%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQKQRWYIAD G+YSKLI++MGKKGQ R+AMWLFSEMRNSGCRPD SVYNALITAHLH++
Sbjct: 117 MQKQRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSK 176
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
DKAKAL K L YF+KMKGMERCKPNIVTYNIL RA AQA VDQVN LFK+L ES+++ D
Sbjct: 177 DKAKALVKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSAD 236
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
IYTYNGVMDAYGKNG IKEME +L+RMKSNQ KPDII+FNLLIDSYGK+Q FDKMEQVFK
Sbjct: 237 IYTYNGVMDAYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFK 296
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
SL+ SKE+PTLPTFNSMI NYGKARL+ KAE VF+KM M Y PS++T E +I MYG+CD
Sbjct: 297 SLLRSKERPTLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCD 356
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
VS+AREIFD + GK+++VSTLNAML+ YC+NGLP EADLLFE++ NM V PDS+TYK
Sbjct: 357 CVSKAREIFDGMVNSGKEVRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYK 416
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL-----AGSQSGSAKT 355
LLYKAYTKA+ KEL++KLLK M++ GI+PNKRFFL+AL T SS A +++GS +
Sbjct: 417 LLYKAYTKADKKELLEKLLKNMDKAGIIPNKRFFLDALGTIGSSQEKPEPARTRTGSRNS 476
Query: 356 D 356
D
Sbjct: 477 D 477
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449525698|ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 260/344 (75%), Positives = 300/344 (87%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQKQRWYIAD G+YSKLI++MGKKGQ R+AMWLFSEMRNSGCRPD SVYNALITAHLH++
Sbjct: 117 MQKQRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSK 176
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
DKAKAL K L YF+KMKGMERCKPNIVTYNIL RA AQA VDQVN LFK+L ES+++ D
Sbjct: 177 DKAKALVKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSAD 236
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
IYTYNGVMDAYGKNG IKEME +L+RMKSNQ KPDII+FNLLIDSYGK+Q FDKMEQVFK
Sbjct: 237 IYTYNGVMDAYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFK 296
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
SL+ SKE+PTLPTFNSMI NYGKARL+ KAE VF+KM M Y PS++T E +I MYG+CD
Sbjct: 297 SLLRSKERPTLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCD 356
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
VS+AREIFD + GK+++VSTLNAML+ YC+NGLP EADLLFE++ NM V PDS+TYK
Sbjct: 357 CVSKAREIFDGMVNSGKEVRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYK 416
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
LLYKAYTKA+ KEL++KLLK M++ GI+PNKRFFL+AL T SS
Sbjct: 417 LLYKAYTKADKKELLEKLLKNMDKAGIIPNKRFFLDALGTIGSS 460
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125541147|gb|EAY87542.1| hypothetical protein OsI_08951 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 248/344 (72%), Positives = 294/344 (85%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQKQRWY+AD GIYSKLI+VMG+KGQ R+AMWLFS+MRNSGCRPD SVYN+LI AHLH+R
Sbjct: 98 MQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGAHLHSR 157
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
DK+KALAKALGYF+KMK ++RC+PNIVTYNILLRA AQA + Q++ LFK+L ES ++PD
Sbjct: 158 DKSKALAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPD 217
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
IYTYNGVMDAYGKNGMI EMESVL RMKSNQC+PD+ITFN+LIDSYG++QAFDKMEQVFK
Sbjct: 218 IYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFK 277
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
SL+ SKEKPT PTFNSMI NYGKARL+ KAE V KMT M + P+++T EC+I MY YCD
Sbjct: 278 SLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCD 337
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
VSRAR+IFDEL ++ +S++NAML+AYCMNGLP EAD L ++ G P +STYK
Sbjct: 338 CVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYK 397
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
LLYKAYTKAN K+L+QKLLKRM GIVPNK+FFL+ALE F ++
Sbjct: 398 LLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFGNT 441
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | ||||||
| TAIR|locus:2122561 | 563 | EMB2453 "EMBRYO DEFECTIVE 2453 | 0.931 | 0.605 | 0.759 | 3e-140 | |
| TAIR|locus:2081041 | 486 | PPR2 "pentatricopeptide repeat | 0.920 | 0.693 | 0.289 | 1.1e-39 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.915 | 0.388 | 0.279 | 1.5e-34 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.866 | 0.387 | 0.261 | 9.1e-33 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.857 | 0.511 | 0.28 | 4.1e-30 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.846 | 0.500 | 0.272 | 5.4e-30 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.860 | 0.545 | 0.256 | 3.1e-29 | |
| TAIR|locus:2015218 | 590 | AT1G63070 [Arabidopsis thalian | 0.855 | 0.530 | 0.273 | 3.4e-29 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.849 | 0.279 | 0.279 | 1.6e-28 | |
| TAIR|locus:2174165 | 504 | AT5G16640 [Arabidopsis thalian | 0.868 | 0.630 | 0.253 | 1.9e-28 |
| TAIR|locus:2122561 EMB2453 "EMBRYO DEFECTIVE 2453" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1372 (488.0 bits), Expect = 3.0e-140, P = 3.0e-140
Identities = 259/341 (75%), Positives = 296/341 (86%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQKQRWYI D G+YSKLI+VMGKKGQTR+AMWLFSEM+NSGCRPD SVYNALITAHLHTR
Sbjct: 123 MQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTR 182
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
DKAKAL K GY KMKG+ERC+PN+VTYNILLRA AQ+ VDQVNALFK+L S ++PD
Sbjct: 183 DKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPD 242
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
+YT+NGVMDAYGKNGMIKEME+VL+RM+SN+CKPDIITFN+LIDSYGK+Q F+KMEQ FK
Sbjct: 243 VYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFK 302
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
SLM SKEKPTLPTFNSMIINYGKAR+ KAE+VF+KM M Y PSFITYEC+I MYGYC
Sbjct: 303 SLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCG 362
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
+VSRAREIF+E+ + + +K STLNAMLE YC NGL EAD LF N+ V PD+STYK
Sbjct: 363 SVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYK 422
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
LYKAYTKA+MKE VQ L+K+ME++GIVPNKRFFLEALE F
Sbjct: 423 FLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVF 463
|
|
| TAIR|locus:2081041 PPR2 "pentatricopeptide repeat 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 99/342 (28%), Positives = 168/342 (49%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
+++Q +Y G Y KL+ ++GK GQ A LF EM G P +Y AL+ A+ TR
Sbjct: 114 LREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAY--TR 171
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
+ + A KMK +C+P++ TY+ LL+AC A D V++L+KE+ E ++ P+
Sbjct: 172 --SNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPN 229
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMK-SNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
T N V+ YG+ G +ME VLS M S CKPD+ T N+++ +G D ME +
Sbjct: 230 TVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWY 289
Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
+ + +P TFN +I +YGK R+ K V + M +++ + TY II +
Sbjct: 290 EKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADV 349
Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
+ FD++ G T ++ Y GL + + + + +++ Y
Sbjct: 350 GDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFY 409
Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
+ A KA+ ++++ RM++ V + R F +E +
Sbjct: 410 NAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAY 451
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 384 (140.2 bits), Expect = 1.5e-34, P = 1.5e-34
Identities = 96/343 (27%), Positives = 169/343 (49%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQ+Q W + IY+ +I+++G++G + +F EM + G Y ALI A+
Sbjct: 131 MQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAY---- 186
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKEL-HESILA 118
+ +L +MK E+ P+I+TYN ++ ACA+ + + + LF E+ HE I
Sbjct: 187 GRNGRYETSLELLDRMKN-EKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGI-Q 244
Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
PDI TYN ++ A G+ E E V M PD+ T++ L++++GK + +K+ +
Sbjct: 245 PDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDL 304
Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
+ P + ++N ++ Y K+ +A VF +M A TP+ TY ++ ++G
Sbjct: 305 LGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQ 364
Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
R++F E+ D +T N ++E + G E LF + + PD T
Sbjct: 365 SGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMET 424
Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
Y+ + A K + E +K+L+ M N IVP+ + + +E F
Sbjct: 425 YEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAF 467
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 9.1e-33, P = 9.1e-33
Identities = 84/321 (26%), Positives = 147/321 (45%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y+ LI+ G+ R A+ +F +M GC+P YN ++ K
Sbjct: 207 DVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVF---GKMGTPWNKI 263
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
+KMK + P+ TYN L+ C + + +F+E+ + + D TYN ++D
Sbjct: 264 TSLVEKMKS-DGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLD 322
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
YGK+ KE VL+ M N P I+T+N LI +Y + D+ ++ + KP
Sbjct: 323 VYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKP 382
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
+ T+ +++ + +A A +F++M P+ T+ I MYG + +IF
Sbjct: 383 DVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442
Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
DE++ G + T N +L + NG+ +E +F+ G P+ T+ L AY++
Sbjct: 443 DEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502
Query: 310 NMKELVQKLLKRMEQNGIVPN 330
E + +RM G+ P+
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPD 523
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 4.1e-30, P = 4.1e-30
Identities = 91/325 (28%), Positives = 161/325 (49%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
AD IYS +I + K A+ LF+EM N G RPD Y++LI+ L + ++
Sbjct: 238 ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC-LCNYGRWSDASR 296
Query: 69 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
L + K PN+VT+N L+ A A+ + + LF E+ + + P+I TYN ++
Sbjct: 297 LLSDMLERK----INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLI 352
Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMHSKE 187
+ + + + E + + + M S C PD++T+N LI+ + K ++ D ME +F+ +
Sbjct: 353 NGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGME-LFRDMSRRGL 411
Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
T+ ++I + +A A+ VF++M + P+ +TY ++ G C N + +A
Sbjct: 412 VGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLD--GLCKNGKLEKA 469
Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
+F+ L K + + T N M E C G + LF + GV PD Y +
Sbjct: 470 MVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISG 529
Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
+ K +KE L +M+++G +P+
Sbjct: 530 FCKKGLKEEAYTLFIKMKEDGPLPD 554
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 338 (124.0 bits), Expect = 5.4e-30, P = 5.4e-30
Identities = 87/319 (27%), Positives = 159/319 (49%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
YS +I + K G A+ LF+EM G + D Y++LI L K AK L
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG-LCNDGKWDDGAKML--- 303
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
++M G P++VT++ L+ + + + L+ E+ +APD TYN ++D + K
Sbjct: 304 REMIG-RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCK 362
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
+ E + M S C+PDI+T+++LI+SY K + D ++F+ + P T
Sbjct: 363 ENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTIT 422
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
+N++++ + ++ A+ +FQ+M + PS +TY ++ G CDN +++A EIF++
Sbjct: 423 YNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLD--GLCDNGELNKALEIFEK 480
Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
+ K + + N ++ C +A LF + + GV PD TY ++ K
Sbjct: 481 MQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS 540
Query: 312 KELVQKLLKRMEQNGIVPN 330
L ++M+++G P+
Sbjct: 541 LSEADMLFRKMKEDGCTPD 559
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 3.1e-29, P = 3.1e-29
Identities = 83/324 (25%), Positives = 162/324 (50%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
A+ IYS +I + K A+ LF+EM N G RP+ Y++LI+ L ++ ++
Sbjct: 258 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC-LCNYERWSDASR 316
Query: 69 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
L + K PN+VT+N L+ A + + + L+ E+ + + PDI+TY+ ++
Sbjct: 317 LLSDMIERK----INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 372
Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
+ + + + E + + M S C P+++T+N LI+ + K + D+ ++F+ +
Sbjct: 373 NGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLV 432
Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
T+ ++I + +AR A+ VF++M + P+ +TY ++ G C N + +A
Sbjct: 433 GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLD--GLCKNGKLEKAM 490
Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
+F+ L + + + T N M+E C G + LF + GV PD Y + +
Sbjct: 491 VVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGF 550
Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
+ +KE L ++M ++G +P+
Sbjct: 551 CRKGLKEEADALFRKMREDGPLPD 574
|
|
| TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 89/325 (27%), Positives = 155/325 (47%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y +I + K+G+ LA+ L ++M D +YN +I K K + A
Sbjct: 214 DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLC----KYKHMDDA 269
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
F KM+ + KP++ TYN L+ C R D + L ++ E + PD+ +N ++
Sbjct: 270 FDLFNKME-TKGIKPDVFTYNPLISCLCNYGRWSD-ASRLLSDMLEKNINPDLVFFNALI 327
Query: 129 DAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
DA+ K G + E E + M KS C PD++ +N LI + K + ++ +VF+ +
Sbjct: 328 DAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGL 387
Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
T+ ++I + +AR A+ VF++M + P +TY ++ G C+N V A
Sbjct: 388 VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLD--GLCNNGNVETA 445
Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
+F+ + K + + T M+EA C G + LF + GV P+ TY +
Sbjct: 446 LVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSG 505
Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
+ + +KE L M+++G +PN
Sbjct: 506 FCRKGLKEEADALFVEMKEDGPLPN 530
|
|
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 89/318 (27%), Positives = 148/318 (46%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
YS L+ +GK+ M L EM G +P+ VY T + +A + +A
Sbjct: 226 YSSLMVGLGKRRDIDSVMGLLKEMETLGLKPN--VYT--FTICIRVLGRAGKINEAYEIL 281
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
++M E C P++VTY +L+ A AR +D +F+++ PD TY ++D +
Sbjct: 282 KRMDD-EGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSD 340
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
N + ++ S M+ + PD++TF +L+D+ K F + + P L T
Sbjct: 341 NRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHT 400
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-DNVSRAREIFDEL 252
+N++I + A +F M ++ P+ TY I YG D+VS A E F+++
Sbjct: 401 YNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVS-ALETFEKM 459
Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
G + NA L + G EA +F ++G+ PDS TY ++ K Y+K
Sbjct: 460 KTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEI 519
Query: 313 ELVQKLLKRMEQNGIVPN 330
+ KLL M +NG P+
Sbjct: 520 DEAIKLLSEMMENGCEPD 537
|
|
| TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 83/327 (25%), Positives = 154/327 (47%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y + IY+ +I + K Q A+ L + M G PD YN+LI+ L + +
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISG-LCSSGRWSDA 240
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
+ + K + P++ T+N L+ AC + V + ++E+ L PDI TY+
Sbjct: 241 TRMVSCMTKRE----IYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
++ + E E + M S C PD++T+++LI+ Y K + + ++F +
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRG 356
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
T+ +I Y +A AE +F++M P+ ITY + ++G CDN + +
Sbjct: 357 VVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYN--VLLHGLCDNGKIEK 414
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
A I ++ K G D + T N ++ C G +A ++ + + G+ PD TY +
Sbjct: 415 ALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMML 474
Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNK 331
K ++ L ++M+++GI+PN+
Sbjct: 475 GLYKKGLRREADALFRKMKEDGILPNE 501
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SV96 | PP358_ARATH | No assigned EC number | 0.7542 | 0.9562 | 0.6216 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019417001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (489 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 366 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-21 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 8e-21
Identities = 83/329 (25%), Positives = 149/329 (45%), Gaps = 17/329 (5%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
AD +Y+ LI+ K G+ +F EM N+G + + ALI +A +AK
Sbjct: 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC----ARAGQVAK 525
Query: 69 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ---VNALFKELHESILAPDIYTYN 125
A G + M+ + KP+ V +N L+ AC Q+ VD+ V A K I PD T
Sbjct: 526 AFGAYGIMRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID-PDHITVG 583
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
+M A G + + V + K + + ++S ++ +D ++ +
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV--- 242
KP F++++ G A KA + Q ++Y ++ G C N
Sbjct: 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS---SLMGACSNAKNW 700
Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKL 301
+A E+++++ + VST+NA++ A C N LP ++L E +G+ P++ TY +
Sbjct: 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE-MKRLGLCPNTITYSI 759
Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
L A + + ++ LL + +++GI PN
Sbjct: 760 LLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 8e-13
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
PD+ TYN ++D Y K G ++E + + MK KP++ T+++LID K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 7e-12
Identities = 66/277 (23%), Positives = 113/277 (40%), Gaps = 44/277 (15%)
Query: 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF--KELHESIL----APDI 121
+AL +F++M KPN VT L ACA+ + AL KE+H +L D
Sbjct: 473 EALIFFRQMLL--TLKPNSVTLIAALSACAR------IGALMCGKEIHAHVLRTGIGFDG 524
Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
+ N ++D Y + G M ++ N + D++++N+L+ Y ++F
Sbjct: 525 FLPNALLDLYVRCG---RMNYAWNQF--NSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579
Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY--TPSFITYECIITMYGYC 239
++ S P TF S++ ++ + + F M KY TP+ Y C++
Sbjct: 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE-KYSITPNLKHYACVV------ 632
Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL---------PTEADLLFENSHNM 290
D + RA ++ E M ++ A+ A +N A +FE N
Sbjct: 633 DLLGRAGKL-TEAYNFINKMPITPDPAVWGAL-LNACRIHRHVELGELAAQHIFELDPN- 689
Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
Y LL Y A + V ++ K M +NG+
Sbjct: 690 ----SVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
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Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 74/333 (22%), Positives = 134/333 (40%), Gaps = 60/333 (18%)
Query: 44 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
P S +N L++ ++D AL + L Q+ G+ K + Y L+ CA++ VD
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGAL-RVLRLVQE-AGL---KADCKLYTTLISTCAKSGKVD 489
Query: 104 QVNALFKELHESILA---PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
A+F+ HE + A +++T+ ++D + G + + M+S KPD + FN
Sbjct: 490 ---AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIINYGKARLQGKAEYVFQKM 217
LI + G+ A D+ V + M ++ P P T +++ A +A+ V+Q +
Sbjct: 547 ALISACGQSGAVDRAFDVL-AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
Query: 218 --TAMKYTPSFITYECIITMYGYCD---NVSRAREIFDELSKLG---------------- 256
+K TP E C + A I+D++ K G
Sbjct: 606 HEYNIKGTP-----EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660
Query: 257 ------------KDMKVSTLNAMLEAY------CMNGLPTEADL-LFENSHNMGVTPDSS 297
+D + + +Y C N + L L+E+ ++ + P S
Sbjct: 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720
Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
T L A + N ++L M++ G+ PN
Sbjct: 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 1e-10
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
P++VTYN L+ + V++ LF E+ + + P++YTY+ ++D K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 58/255 (22%), Positives = 112/255 (43%), Gaps = 28/255 (10%)
Query: 88 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
TY+ L+ AC +++ V A++ + S PD Y N V+ + K GM+ + + M
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 148 KSNQCKPDIITFNL----LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---IN 200
++ ++ L+D+ R+AF +F+ + TF M+
Sbjct: 185 PER----NLASWGTIIGGLVDAGNYREAF----ALFREMWEDGSDAEPRTFVVMLRASAG 236
Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYEC-IITMYGYCDNVSRAREIFDELSKLGKDM 259
G AR G+ + T + +F++ C +I MY C ++ AR +FD + +
Sbjct: 237 LGSARA-GQQLHCCVLKTGV-VGDTFVS--CALIDMYSKCGDIEDARCVFDGMPE----K 288
Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
N+ML Y ++G EA L+ + GV+ D T+ ++ + +++ + E ++
Sbjct: 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348
Query: 320 KRMEQNG----IVPN 330
+ + G IV N
Sbjct: 349 AGLIRTGFPLDIVAN 363
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 3e-08
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 44 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
PD YN LI + K + +AL F +MK KPN+ TY+IL+ +
Sbjct: 1 PDVVTYNTLIDGYC----KKGKVEEALKLFNEMK-KRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D +S L+ V G G A + + R G + Y++L+ A AK KA
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC----SNAKNWKKA 703
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
L ++ +K + + +P + T N L+ A + + + + E+ L P+ TY+ ++
Sbjct: 704 LELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDII 157
A + +LS+ K + KP+++
Sbjct: 763 ASERKDDADVGLDLLSQAKEDGIKPNLV 790
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 6e-07
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
TYN ++D K G ++E + MK +PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 82/430 (19%), Positives = 141/430 (32%), Gaps = 129/430 (30%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
+ D + + LI + K G A +F M R D +NA+I+ + +
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGE----C 269
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL----APDIY 122
+ L F M+ + P+++T ++ AC + L +E+H ++ A D+
Sbjct: 270 LEGLELFFTMRELS-VDPDLMTITSVISACELLGDE----RLGREMHGYVVKTGFAVDVS 324
Query: 123 TYNGVMDAYGKNGMIKEMESVLSR-------------------------------MKSNQ 151
N ++ Y G E E V SR M+ +
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384
Query: 152 CKPDIITF-----------------------------------NLLIDSYGKRQAFDKME 176
PD IT N LI+ Y K + DK
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444
Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY------- 229
+VF ++ EK + ++ S+I +A F++M + P+ +T
Sbjct: 445 EVFHNI---PEKDVI-SWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSAC 499
Query: 230 ----------------------------ECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
++ +Y C ++ A F+ K V
Sbjct: 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-----DV 554
Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
+ N +L Y +G + A LF GV PD T+ L A +++ M +
Sbjct: 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614
Query: 322 MEQN-GIVPN 330
ME+ I PN
Sbjct: 615 MEEKYSITPN 624
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 8e-06
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH 56
D Y+ LI KKG+ A+ LF+EM+ G +P+ Y+ LI
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 8e-06
Identities = 71/353 (20%), Positives = 125/353 (35%), Gaps = 76/353 (21%)
Query: 25 GQTRLAMWLFSEMRNSGCRPDPSVYNALI-------------TAHLHTRDKAKALAKALG 71
GQ A+ L M+ D Y AL +L LG
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124
Query: 72 ------------------YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
F KM ER ++ ++N+L+ A+A D+ L+ +
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMP--ER---DLFSWNVLVGGYAKAGYFDEALCLYHRML 179
Query: 114 ESILAPDIYTY-------NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
+ + PD+YT+ G+ D +E+ + + R D+ N LI Y
Sbjct: 180 WAGVRPDVYTFPCVLRTCGGIPDL----ARGREVHAHVVRFGFEL---DVDVVNALITMY 232
Query: 167 GK-------RQAFDKMEQVFKSLMHSKEKPTLP--TFNSMIINYGKARLQGKAEYVFQKM 217
K R FD+M P ++N+MI Y + + +F M
Sbjct: 233 VKCGDVVSARLVFDRM-------------PRRDCISWNAMISGYFENGECLEGLELFFTM 279
Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
+ P +T +I+ + RE+ + K G + VS N++++ Y G
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339
Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
EA+ +F T D+ ++ + Y K + + + MEQ+ + P+
Sbjct: 340 GEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 68/342 (19%), Positives = 129/342 (37%), Gaps = 25/342 (7%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
+ Y L+ R ++ + +SG PD + N ++ H+ K L
Sbjct: 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV----KCGML 174
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
A F +M ER N+ ++ ++ A N + ALF+E+ E + T+
Sbjct: 175 IDARRLFDEMP--ER---NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV 229
Query: 127 VMDAYGKNGMIKEMESVLS-RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
++ A G + + + +K+ D LID Y K + VF +
Sbjct: 230 MLRASAGLGSARAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGM--- 285
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECIITMYGYCDNV 242
EK T+ +NSM+ Y L G +E ++ +M + T+ +I ++ +
Sbjct: 286 PEKTTV-AWNSMLAGYA---LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341
Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
A++ L + G + + A+++ Y G +A +F+ + ++ L
Sbjct: 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNAL 397
Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
Y ++ +RM G+ PN FL L S
Sbjct: 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 1e-04
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
TYN ++ Y K G ++E + MK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198
PD++T+N LID Y K+ ++ ++F + KP + T++ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
V T N +++ YC G EA LF G+ P+ TY +L K
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 37/175 (21%), Positives = 80/175 (45%), Gaps = 7/175 (4%)
Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
L+ E+ +S ++ D +T++ ++ + + +++ + + + DI+ L+D Y
Sbjct: 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371
Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
K + VF + L ++N++I YG KA +F++M A P+ +
Sbjct: 372 KWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427
Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN--AMLEAYCMNGLPTEA 280
T+ +++ Y + EIF +S+ + +K ++ M+E GL EA
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHR-IKPRAMHYACMIELLGREGLLDEA 481
|
Length = 697 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 7e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
+ TYN ++ A K G +VL MK++ KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 8e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
VTYN L+ +A V++ LFKE+ E + PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.001
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
L PD+ TYN ++D + G + E +L M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.001
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 82 CKPNIVTYNILLRACAQARNVDQVNALFKE 111
KP++VTYN L+ +A VD+ L E
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.92 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.8 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.79 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.77 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.75 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.73 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.66 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.66 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.65 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.56 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.55 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.52 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.51 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.51 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.49 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.48 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.48 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.48 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.47 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.46 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.46 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.44 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.44 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.43 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.41 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.37 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.37 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.35 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.32 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.28 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.28 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.28 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.27 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.27 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.18 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.16 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.14 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.12 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.09 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.09 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.08 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.08 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.06 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.03 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.02 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.99 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.98 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.94 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.91 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.88 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.88 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.87 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.87 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.85 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.85 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.84 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.82 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.82 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.81 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.8 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.78 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.77 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.76 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.75 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.75 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.74 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.72 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.7 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.69 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.68 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.66 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.65 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.63 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.63 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.62 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.58 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.57 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.55 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.5 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.49 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.48 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.48 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.46 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.43 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.41 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.38 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.37 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.36 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.35 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.34 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.34 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.33 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.31 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.28 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.23 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.23 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.22 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.17 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.14 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.13 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.07 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.07 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.04 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.04 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.04 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.03 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.03 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.02 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.01 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.01 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.99 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.97 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.97 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.95 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.95 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.95 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.92 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.9 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.9 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.9 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.87 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.87 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.79 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.79 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.78 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.77 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.72 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.71 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.71 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.69 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.66 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.62 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.57 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.55 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.55 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.53 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.51 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.5 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.49 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.47 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.44 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.41 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.39 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.38 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.36 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.31 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.27 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.25 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.23 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.22 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.19 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.09 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.08 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.98 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.97 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.92 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.92 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.84 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.84 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.72 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.67 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.67 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.65 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.57 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.54 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.54 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.51 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.46 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.46 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.38 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.2 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.2 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.13 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.08 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.06 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.97 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.96 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.79 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.75 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.74 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.72 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.7 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.67 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.66 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.65 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.51 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.51 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.47 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.42 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.38 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.37 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.32 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.3 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.19 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.19 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.19 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.14 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.11 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.9 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 94.89 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 94.86 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.85 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.82 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.7 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.7 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.51 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.49 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.4 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.36 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.34 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 94.31 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.3 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.28 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.24 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.2 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.06 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.03 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.0 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.95 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.91 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.85 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.79 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.76 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.73 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.53 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.39 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.08 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.74 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.73 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.6 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.48 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.31 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.25 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.14 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.07 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.98 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.74 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.47 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.31 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.27 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.0 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 90.97 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.83 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.79 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 90.57 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.47 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.23 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 90.04 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.85 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.7 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.6 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 88.89 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 88.84 | |
| PF11848 | 48 | DUF3368: Domain of unknown function (DUF3368); Int | 88.25 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 87.87 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.74 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.51 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 87.29 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.25 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 87.04 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.97 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 86.88 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.82 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.79 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 86.6 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 85.7 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.39 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.32 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.21 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.17 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.14 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.95 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 84.86 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 84.47 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.9 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 83.41 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 83.39 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.36 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.69 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.46 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 82.31 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 82.25 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 82.07 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 81.49 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.05 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.02 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.24 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 80.22 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.14 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-59 Score=430.38 Aligned_cols=334 Identities=18% Similarity=0.300 Sum_probs=234.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (366)
||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.+ .+++|.++|++|.+ .|+.||..+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G----~vd~A~~vf~eM~~-~Gv~PdvvT 509 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG----KVDAMFEVFHEMVN-AGVEANVHT 509 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc----CHHHHHHHHHHHHH-cCCCCCHHH
Confidence 6667777777777777777777777777777777777777777777776433 36677777777765 566677777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS--NQCKPDIITFNLLIDSY 166 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~ 166 (366)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 7777777777777777777777777667777777777777777777777777777777754 45666777777777777
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 246 (366)
++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777777777777766667777777777777777777777777777777776777777777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
++|+.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 77777777777777777777777777777777777777777666667777777777777777777777777777777667
Q ss_pred CCCChhHHHHHHHHhhccccc
Q 017743 327 IVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 327 ~~~~~~~~~~ll~~~~~~~~~ 347 (366)
+.||..||..+|.+|++.+..
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCH
Confidence 777777777777777666553
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=426.83 Aligned_cols=335 Identities=22% Similarity=0.356 Sum_probs=325.4
Q ss_pred ccccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCC
Q 017743 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82 (366)
Q Consensus 3 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 82 (366)
+..|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+ ++++|+++|+.|.. .++
T Consensus 464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G----~~eeAl~lf~~M~~-~Gv 538 (1060)
T PLN03218 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG----QVAKAFGAYGIMRS-KNV 538 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc----CHHHHHHHHHHHHH-cCC
Confidence 4578999999999999999999999999999999999999999999999999999555 49999999999997 789
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (366)
.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 99999999999999999999999999999986 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (366)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHH
Q 017743 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320 (366)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (366)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++++
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHhh
Q 017743 321 RMEQNGIVPNKRFFLEALETFS 342 (366)
Q Consensus 321 ~m~~~g~~~~~~~~~~ll~~~~ 342 (366)
+|.+.|+.||..+|+.++..|.
T Consensus 779 ~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 779 QAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999986543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=388.03 Aligned_cols=328 Identities=19% Similarity=0.296 Sum_probs=235.5
Q ss_pred cccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCC
Q 017743 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 83 (366)
Q Consensus 4 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 83 (366)
..++.||..+|+.++.+|.+.++++.|.+++..|...|+.||..+|+.++.+|++.++ +++|.++|++|. .
T Consensus 116 ~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~----~~~A~~lf~~m~-----~ 186 (697)
T PLN03081 116 GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM----LIDARRLFDEMP-----E 186 (697)
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCC----HHHHHHHHhcCC-----C
Confidence 3456788888888888888888888888888888888888888888888888885544 888888888876 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH-----------------------------------HHHH
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY-----------------------------------NGVM 128 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------------------------~~ll 128 (366)
||..+||.++.+|++.|++++|.++|++|.+.|+.|+..+| +.|+
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 77888888888888888888888888888776666655554 5556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHh
Q 017743 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208 (366)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 208 (366)
.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence 66666666666666666664 24666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
+|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.+ ||..+||.||.+|++.|+.++|.++|++|.
T Consensus 343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666667666666643 466677777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh-CCCCCChhHHHHHHHHhhcccccC
Q 017743 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-NGIVPNKRFFLEALETFSSSLAGS 348 (366)
Q Consensus 289 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~ 348 (366)
+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|..++..+++.|...
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 777777777777777777777777777777777764 477777777777777777766543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=382.81 Aligned_cols=326 Identities=16% Similarity=0.261 Sum_probs=292.1
Q ss_pred cccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC----
Q 017743 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM---- 79 (366)
Q Consensus 4 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~---- 79 (366)
..|+.||..+|+.++..|++.|++++|.++|++|. .||..+|+.++.+|++.+ ++++|+++|++|.+.
T Consensus 151 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g----~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAG----NYREAFALFREMWEDGSDA 222 (697)
T ss_pred HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCc----CHHHHHHHHHHHHHhCCCC
Confidence 45677777777777777777777777777777775 367777777777777443 377777777777541
Q ss_pred ------------------------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 017743 80 ------------------------------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129 (366)
Q Consensus 80 ------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 129 (366)
.|+.||..+|++|+.+|++.|++++|.++|++|. .+|..+|+.++.
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~ 298 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLA 298 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHH
Confidence 2345566667888899999999999999999985 469999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhH
Q 017743 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209 (366)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 209 (366)
+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|..||..+|+.++.+|++.|++++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~ 378 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+
T Consensus 379 A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 379 ARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999997 4788999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -CCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcccccC
Q 017743 290 -MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348 (366)
Q Consensus 290 -~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 348 (366)
.|+.|+..+|+.++.+|.+.|++++|.+++++| ++.|+..+|..++.+|...++..
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcH
Confidence 699999999999999999999999999998765 68899999999999999988764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=383.31 Aligned_cols=332 Identities=19% Similarity=0.244 Sum_probs=253.1
Q ss_pred ccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC
Q 017743 5 RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84 (366)
Q Consensus 5 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 84 (366)
.|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|++. |.+++|.++|++|. .|
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~----g~~~~A~~vf~~m~-----~~ 352 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL----GSWGEAEKVFSRME-----TK 352 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc----CCHHHHHHHHhhCC-----CC
Confidence 4556666666666666666666666666666666666666666666666666633 44777777777776 46
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
|..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++++.++++.|.+.|+.|+..+++.++.
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 77778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (366)
+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+++.
T Consensus 433 ~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 8888888888888887773 35666777777777777777777777777764 367777777666655555555554
Q ss_pred HHHHHHHHHhCCC------------------------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 017743 245 AREIFDELSKLGK------------------------------DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294 (366)
Q Consensus 245 a~~~~~~~~~~~~------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 294 (366)
+.+++..+.+.|+ .+|..+|+++|.+|++.|+.++|.++|++|.+.|+.|
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444332 4678889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhchHHHHHHHHHHHH-hCCCCCChhHHHHHHHHhhcccccCCC
Q 017743 295 DSSTYKLLYKAYTKANMKELVQKLLKRME-QNGIVPNKRFFLEALETFSSSLAGSQS 350 (366)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~~ 350 (366)
|..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++..+++.|.....
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999998 679999999999999999999875433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=383.97 Aligned_cols=336 Identities=20% Similarity=0.259 Sum_probs=264.1
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchH--------------------------
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD-------------------------- 61 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~-------------------------- 61 (366)
.||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..++
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 356666777777777777777777777777666666666666555544432111
Q ss_pred -----HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 017743 62 -----KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136 (366)
Q Consensus 62 -----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 136 (366)
+.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|.+|.+.|+.||..||+.++.+|++.|+
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 3345788888888886 478888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHH
Q 017743 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216 (366)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 216 (366)
.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++| ..||..+|+.+|.+|.+.|++++|.++|++
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM----ETKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888887 346777888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC------
Q 017743 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM------ 290 (366)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------ 290 (366)
|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~ 459 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHH
Confidence 88888888888888888888888888888888888777777777777777777777777777777766665432
Q ss_pred ------------------------CC------------------------------------------------------
Q 017743 291 ------------------------GV------------------------------------------------------ 292 (366)
Q Consensus 291 ------------------------~~------------------------------------------------------ 292 (366)
++
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 12
Q ss_pred -----------CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcccccCCCCC
Q 017743 293 -----------TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGS 352 (366)
Q Consensus 293 -----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~ 352 (366)
.||..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..||..+|.+|+++|.......
T Consensus 540 ~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 540 MNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 345667888888899999999999999999999999999999999999999987544333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-23 Score=179.19 Aligned_cols=315 Identities=12% Similarity=0.022 Sum_probs=254.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC--CHHHHHHHH
Q 017743 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP--NIVTYNILL 93 (366)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~ 93 (366)
....+...|++++|...|+++.+. .| +..++..+...+. ..|++++|..+++.+.......+ +...+..+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFR----RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHH----HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 344567889999999999999986 34 4456777777777 44559999999999886321111 135678889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhcc
Q 017743 94 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD----IITFNLLIDSYGKR 169 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 169 (366)
..|...|+++.|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998763 45678899999999999999999999999988654332 22455677788899
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 017743 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249 (366)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 249 (366)
|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...+
T Consensus 194 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 194 GDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998753 33566788888999999999999999999997642333567889999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh---hchHHHHHHHHHHHHhCC
Q 017743 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK---ANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 250 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g 326 (366)
+.+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.+.+
T Consensus 273 ~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 273 RRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 9998874 45566788999999999999999999998875 6899899988887765 568999999999999998
Q ss_pred CCCChhHHHHHHHHhhcccccCC
Q 017743 327 IVPNKRFFLEALETFSSSLAGSQ 349 (366)
Q Consensus 327 ~~~~~~~~~~ll~~~~~~~~~~~ 349 (366)
+.|++. ..|++.|-...
T Consensus 349 ~~~~p~------~~c~~cg~~~~ 365 (389)
T PRK11788 349 LKRKPR------YRCRNCGFTAR 365 (389)
T ss_pred HhCCCC------EECCCCCCCCc
Confidence 888887 22555555433
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-21 Score=185.65 Aligned_cols=321 Identities=13% Similarity=0.092 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
...+..++..+.+.|++++|.++++.+.+.. +.+...|..+...+... +++++|+..|+.+.+.. +.+...+.
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~--~~~~~~~~ 639 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAA----GDLNKAVSSFKKLLALQ--PDSALALL 639 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhC--CCChHHHH
Confidence 3444455555555555555555555554432 22444555555555432 33666666666655322 33445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (366)
.+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCC
Confidence 66666666666666666666665542 2345556666666666666666666666666553 335556666666777777
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 017743 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (366)
++++|.+.|+.+...+ |+..++..+...+.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+
T Consensus 718 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 718 DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 7777777777776643 333556666777777777777777777776654 4556677777777777888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 330 (366)
.+.+..+. +..+++.+...+...|+ .+|+.+++++.+.. +-+..++..+...+...|++++|.++++++.+.+.. +
T Consensus 795 ~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~ 870 (899)
T TIGR02917 795 TVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-A 870 (899)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C
Confidence 87776543 67777778888888887 77888888777653 235566777888888889999999999999987643 7
Q ss_pred hhHHHHHHHHhhccccc
Q 017743 331 KRFFLEALETFSSSLAG 347 (366)
Q Consensus 331 ~~~~~~ll~~~~~~~~~ 347 (366)
..++..+...+...|..
T Consensus 871 ~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 871 AAIRYHLALALLATGRK 887 (899)
T ss_pred hHHHHHHHHHHHHcCCH
Confidence 77888888888887765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-21 Score=184.59 Aligned_cols=303 Identities=13% Similarity=0.038 Sum_probs=265.1
Q ss_pred ccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH
Q 017743 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86 (366)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 86 (366)
.+.+..+|..+...+.+.|++++|...|+.+.+.. +.+...+..+...+. ..+++++|...|+++.+. .+.+.
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~--~~~~~ 669 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----VMKNYAKAITSLKRALEL--KPDNT 669 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----HcCCHHHHHHHHHHHHhc--CCCCH
Confidence 35577899999999999999999999999998763 225566777777776 445599999999998853 25668
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
.++..++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.|+.+...+ |+..++..+..++
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 899999999999999999999999998875 4577788889999999999999999999998874 4557788899999
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 246 (366)
.+.|++++|.+.++.+... .+.+...+..+...|...|++++|...|+++.+.. +.+..++..+...+...|+ .+|.
T Consensus 747 ~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRAL 823 (899)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHH
Confidence 9999999999999999886 44578899999999999999999999999999876 5678899999999999999 8899
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..++.+.+..+. +...+..+...+...|++++|.+.++++.+.+.. +..++..+..++.+.|++++|.+++++|++
T Consensus 824 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 824 EYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 999999887544 6778888999999999999999999999998754 899999999999999999999999999864
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-21 Score=163.98 Aligned_cols=275 Identities=13% Similarity=0.109 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD---IYTYNGVMDAYGKNGMIK 138 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~ 138 (366)
..+++++|+..|.++.+.. +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+++
T Consensus 47 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred hcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 4455889999999998643 45667899999999999999999999999987542221 246788899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCcHhHHHHHH
Q 017743 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL----PTFNSMIINYGKARLQGKAEYVF 214 (366)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~ 214 (366)
+|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998763 456788999999999999999999999999886544322 24556777888999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 017743 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294 (366)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 294 (366)
+++.+.. +.+...+..+...+...|++++|.++++.+.+.++.....+++.++.+|...|++++|...++++.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 9998764 34567888899999999999999999999998754434567889999999999999999999999886 46
Q ss_pred CHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 017743 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 344 (366)
+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+...
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAE 328 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhc
Confidence 7677789999999999999999999999885 68988888888877643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-18 Score=155.35 Aligned_cols=319 Identities=10% Similarity=-0.013 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
...+..++......|++++|...|+.+... .|+ ...+..+...+. ..|++++|+..+++..... +.+...+
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~----~~g~~~~Ai~~l~~Al~l~--P~~~~a~ 147 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL----KSKQYATVADLAEQAWLAF--SGNSQIF 147 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 445555666777789999999999988875 454 344555555555 4445888998888887532 4556778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 017743 90 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (366)
..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 225 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV 225 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC
Confidence 88888899999999999988887765422 33333333 34778899999999998887764334445555566778889
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhH----HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK----AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
|++++|...+++..... +.+...+..+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|
T Consensus 226 g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA 303 (656)
T PRK15174 226 GKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKA 303 (656)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999988763 3467777888888899999885 788898888764 44577888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS-STYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
...++...+..+. +...+..+..++...|++++|...++.+...+ |+. ..+..+..++...|+.++|...|++..+
T Consensus 304 ~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 304 IPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998887654 56777888899999999999999999888754 443 3344456778889999999999999887
Q ss_pred CCCCCChhHHHHHHHHhhcc
Q 017743 325 NGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 325 ~g~~~~~~~~~~ll~~~~~~ 344 (366)
..-.-....|...+..+...
T Consensus 381 ~~P~~~~~~~~ea~~~~~~~ 400 (656)
T PRK15174 381 ARASHLPQSFEEGLLALDGQ 400 (656)
T ss_pred hChhhchhhHHHHHHHHHHH
Confidence 53222234444444444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-18 Score=155.19 Aligned_cols=318 Identities=8% Similarity=-0.040 Sum_probs=249.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 017743 15 SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLR 94 (366)
Q Consensus 15 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (366)
..++..+.+.|++++|..+++........+....+ .+..+.. ..|+++.|+..++++.... +.+...+..+..
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l----~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~ 118 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPL----ASSQPDAVLQVVNKLLAVN--VCQPEDVLLVAS 118 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHh----hcCCHHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 44667788999999999999999887433322333 3333444 4556999999999998643 556778889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 017743 95 ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174 (366)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (366)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHH
Confidence 9999999999999999999863 345678888999999999999999999988766433 33334333 34788999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH----HHHHHH
Q 017743 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR----AREIFD 250 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~ 250 (366)
|...++.+......++...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++ |...|+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 99999998876444455555666778889999999999999999875 4567788889999999999986 899999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 330 (366)
...+..+. +...+..+...+...|++++|...+++...... .+...+..+..++...|++++|...++++.+.+ |+
T Consensus 275 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~ 350 (656)
T PRK15174 275 HALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GV 350 (656)
T ss_pred HHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc
Confidence 99987655 788999999999999999999999999998753 356778888999999999999999999998753 54
Q ss_pred hhH-HHHHHHHhhccccc
Q 017743 331 KRF-FLEALETFSSSLAG 347 (366)
Q Consensus 331 ~~~-~~~ll~~~~~~~~~ 347 (366)
... +..+-.++...|..
T Consensus 351 ~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKT 368 (656)
T ss_pred chHHHHHHHHHHHHCCCH
Confidence 433 22233445555543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-16 Score=143.75 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 017743 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93 (366)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 93 (366)
+......+.+.|++++|+..|++.+.. .|+...|..+-.++. ..+++++|++.+....+.. +.+...|..+.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~----~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a 201 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHN----ALGDWEKVVEDTTAALELD--PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHH----HhCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 344556666677777777777776653 455555555555555 3344666666666665432 33455666666
Q ss_pred HHHHhcCCHHHHHHHH
Q 017743 94 RACAQARNVDQVNALF 109 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~ 109 (366)
.++...|++++|...|
T Consensus 202 ~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 202 NAYDGLGKYADALLDL 217 (615)
T ss_pred HHHHHcCCHHHHHHHH
Confidence 6666666666665433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-16 Score=140.86 Aligned_cols=255 Identities=12% Similarity=0.008 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 017743 65 ALAKALGYFQKMKGMERCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143 (366)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 143 (366)
.+++|++.|+...+.....| ....|+.+...+...|++++|...+++.++.. +-+...|..+...+...|++++|...
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555553221122 23455566666666677777777776666542 12344566666666666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC
Q 017743 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223 (366)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 223 (366)
|++..+.. +.+..++..+...+...|++++|...|++.+... +.+...+..+...+.+.|++++|...++...+.. +
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P 464 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-P 464 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 77666553 2245666666666667777777777777666642 2245555566666666777777777777666542 3
Q ss_pred CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 017743 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS------TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297 (366)
Q Consensus 224 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 297 (366)
.+...++.+...+...|++++|...|+.........+.. .++.....+...|++++|..++++....+. .+..
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~ 543 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDI 543 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHH
Confidence 345566666666667777777777777666543221111 111122223335677777777776665432 2344
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.+..+...+...|++++|+++|++..+
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566666777777777777777766655
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-16 Score=125.28 Aligned_cols=323 Identities=16% Similarity=0.185 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchH-------------------------HHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD-------------------------KAKAL 66 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~-------------------------~~~~~ 66 (366)
.+=|.|+. ....|.+.++.-+|+.|.+.|+..+...-..+++..+..+. +.|.+
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 34455555 55688999999999999999988888777777765443221 11222
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 017743 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146 (366)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 146 (366)
. .-+|+. .+.+..++.+||.++++--..+.|.+++++......+.+..+||.+|.+..-... .+++.+
T Consensus 196 A--dL~~E~------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~E 263 (625)
T KOG4422|consen 196 A--DLLFET------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAE 263 (625)
T ss_pred H--HHHHhh------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHH
Confidence 1 122222 2457789999999999999999999999999988888999999999987654332 789999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChhH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhH-HHHHHHHHHh--
Q 017743 147 MKSNQCKPDIITFNLLIDSYGKRQAFDK----MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK-AEYVFQKMTA-- 219 (366)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~-- 219 (366)
|....+.||..|+|+++.+..+.|+++. |.+++.+|.+-|+.|...+|..+|..+++.++..+ +..++..+..
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 9999999999999999999999998865 46788899999999999999999999999888754 5555555443
Q ss_pred --CCCC---C-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 220 --MKYT---P-SFITYECIITMYGYCDNVSRAREIFDELSKLG----KDMK---VSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 220 --~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
+.++ | |...+...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2 34567777888889999999988876665421 2222 23356677778888889999999999
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccccc
Q 017743 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 287 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 347 (366)
|.-.-+-|+..+...++++....|.++-..+++..+...|..-....-..+++.+++....
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~h 484 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLH 484 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCC
Confidence 9988788999999999999999999999999999999999877777777788888776543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-15 Score=121.33 Aligned_cols=307 Identities=14% Similarity=0.155 Sum_probs=222.6
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHH
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 87 (366)
+-+..+|..+|.++|+-...+.|.++|.+-.....+.+..++|.+|.+-. +..-.+++.+|.. ....||..
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S--------~~~~K~Lv~EMis-qkm~Pnl~ 274 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS--------YSVGKKLVAEMIS-QKMTPNLF 274 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--------hhccHHHHHHHHH-hhcCCchH
Confidence 44678999999999999999999999999988888899999999998765 3344678888887 66899999
Q ss_pred HHHHHHHHHHhcCCHH----HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC----C
Q 017743 88 TYNILLRACAQARNVD----QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE-MESVLSRMKS----NQCK----P 154 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~----~ 154 (366)
|||+++.+..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++ -
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 9999999999999875 467788999999999999999999999999887744 4455555432 2222 2
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK----EKPT---LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 227 (366)
|...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....++....+....+|+.|.-.-+-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 45566777888888899888888766553321 2232 2345566677778888888888888888777778888
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-Ch---hH----------HHHH-------HHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LP---TE----------ADLL-------FEN 286 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~---~~----------a~~~-------~~~ 286 (366)
+...++++....++++-..++|..+...|...+...-.-++...++.. .+ +. |..+ -.+
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 888888888888888888888888877765444444444444444433 11 00 0111 112
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 287 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
|... .......+..+-.+.+.|..++|.+++..+.++
T Consensus 515 ~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 515 QRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 2222 334455666666677777888887777777544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-16 Score=132.66 Aligned_cols=306 Identities=14% Similarity=0.174 Sum_probs=186.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchH---------------------------
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRD--------------------------- 61 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~--------------------------- 61 (366)
-.++|..+...+-..|++++|+.+|+.+++. +| ....|..+-.++...++
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 3567888888888888888888888888765 33 22333333333332221
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhcCCHH
Q 017743 62 -------------------------------------KAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVD 103 (366)
Q Consensus 62 -------------------------------------~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 103 (366)
..|....|++.|++.... .|+ ...|-.|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcch
Confidence 123333333333333321 222 233444444444444444
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHH
Q 017743 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD-IITFNLLIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (366)
+|...|.+..... +-....+-.+...|...|.++-|+..+++..+. .|+ ...|+.+..++-..|+..+|.+.|++.
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 4444444443321 112333444444455566666666666666654 233 556777777777777777777777777
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH
Q 017743 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261 (366)
Q Consensus 183 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 261 (366)
+... +.-..+.+.+...+...|.++.|..+|....+. .|. ....+.|...|-..|++++|...+++..+-.+. -.
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HH
Confidence 6642 223455666777777777777777777776654 333 456677777777778888888888777764332 25
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh
Q 017743 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
..|+.+...|-..|+.+.|...+.+.+..+ |. ...++.|...|...|+..+|+.-|+...+ ++||.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 667777777888888888888887777643 33 56677888888888888888888888776 45554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.8e-15 Score=142.23 Aligned_cols=309 Identities=10% Similarity=0.075 Sum_probs=214.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHH--------HhhchHHHHHHHHHHHHHHHHhcCC
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITA--------HLHTRDKAKALAKALGYFQKMKGME 80 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~--------~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (366)
+..++..+...+.+.|++++|...|++..+..... ....|..++.. .+......+++++|+..|++.....
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 67788889999999999999999999988753221 11122222110 0111114456899999999988643
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH---------------------------------
Q 017743 81 RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV--------------------------------- 127 (366)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------- 127 (366)
+.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+
T Consensus 382 --P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 382 --NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566778888999999999999999999988753 2223333222
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 017743 128 ---------MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198 (366)
Q Consensus 128 ---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 198 (366)
...+...|++++|.+.|++..+... .+...+..+...|.+.|++++|...++++.+... .+...+..+.
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~a 536 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYG 536 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 2334457888888888888877642 2566777788888888999999988888876432 2333333232
Q ss_pred HHHHhcCcHhHHHHHHHHHHhC---------------------------------------CCCCCHHHHHHHHHHhhcc
Q 017743 199 INYGKARLQGKAEYVFQKMTAM---------------------------------------KYTPSFITYECIITMYGYC 239 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~~ 239 (366)
..+...++.++|...++.+... ..+.+...+..+...+.+.
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR 616 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 3333344444444333322100 1134455667788888889
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHH
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (366)
|++++|...|+.+.+..+. +...+..++..+...|++++|++.++...+.. +.+...+..+..++...|++++|..++
T Consensus 617 g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999887655 78889999999999999999999999887653 235666777888888999999999999
Q ss_pred HHHHhC
Q 017743 320 KRMEQN 325 (366)
Q Consensus 320 ~~m~~~ 325 (366)
+++...
T Consensus 695 ~~al~~ 700 (1157)
T PRK11447 695 NRLIPQ 700 (1157)
T ss_pred HHHhhh
Confidence 998864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-14 Score=141.32 Aligned_cols=310 Identities=12% Similarity=0.057 Sum_probs=198.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHhhch---------------------------
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTR--------------------------- 60 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~--------------------------- 60 (366)
.+..++..+...+...|++++|.+.|++..+. .|+ ...+..+...+....
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 35667778889999999999999999999875 343 333443433331100
Q ss_pred -----------HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 017743 61 -----------DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129 (366)
Q Consensus 61 -----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 129 (366)
...+++++|+..|++..+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+..
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al 537 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGL 537 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 01233444444444444321 2233344444445555555555555555544332 112223333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 017743 130 AYGKNGMIKEMESVLSRMKSNQCKPDII---------TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200 (366)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 200 (366)
.+...++.++|...++.+......++.. .+......+...|+.++|..+++. .+.+...+..+...
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~ 612 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADW 612 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHH
Confidence 3344455555555444433221111111 111234455666777777766651 34456677788899
Q ss_pred HHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 017743 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 280 (366)
+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.++.+.+.... +...+..+..++...|++++|
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999875 456788999999999999999999999998876433 566778888899999999999
Q ss_pred HHHHHHhhhCCCC--C---CHHHHHHHHHHHHhhchHHHHHHHHHHHHh-CCCCCC
Q 017743 281 DLLFENSHNMGVT--P---DSSTYKLLYKAYTKANMKELVQKLLKRMEQ-NGIVPN 330 (366)
Q Consensus 281 ~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~g~~~~ 330 (366)
.++++.+...... | +...+..+.+.+...|++++|+..|++... .|+.|+
T Consensus 691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 9999998875322 2 234666678889999999999999999863 455543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-14 Score=122.62 Aligned_cols=284 Identities=13% Similarity=0.072 Sum_probs=212.9
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH--HHHHHHHhcCC
Q 017743 24 KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN--ILLRACAQARN 101 (366)
Q Consensus 24 ~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ 101 (366)
.|++++|.+.+....+.. +....+.++.+..- ...|+++.|.+.+.++.+. .|+..... .....+...|+
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA--~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAA--QQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHH--HHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCC
Confidence 599999998888765532 12222233322210 1445699999999998763 55553332 34678889999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCChhH
Q 017743 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI-------ITFNLLIDSYGKRQAFDK 174 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ 174 (366)
++.|.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+.
T Consensus 169 ~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 169 NHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999998875 446778888899999999999999999999988654322 123333444444555666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
..++++.+-.. .+.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+...+
T Consensus 248 l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 248 LKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh
Confidence 67777766443 3457888888999999999999999999998874 5555332 23333456999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 255 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..+. |+..+..+...|.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|..++++-..
T Consensus 323 ~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 323 QHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7655 7888899999999999999999999999885 68999999999999999999999999987654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-15 Score=126.35 Aligned_cols=279 Identities=15% Similarity=0.174 Sum_probs=231.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
.+|..|...+-..|+...|++-|++.... .|+ ...|-.|-..|. ..+.+++|+..+.+..... +.....+.
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k----e~~~~d~Avs~Y~rAl~lr--pn~A~a~g 290 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK----EARIFDRAVSCYLRALNLR--PNHAVAHG 290 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH----HHhcchHHHHHHHHHHhcC--Ccchhhcc
Confidence 35677777888889999999999998864 343 334555555554 6667999999998887542 44567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (366)
.+...|...|.++.|+..|++.++.. +--...|+.|..++-..|++.+|.+.+.+..... +......+.|...|...|
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQG 368 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999864 2246789999999999999999999999998863 335778899999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCcHHHHHHH
Q 017743 171 AFDKMEQVFKSLMHSKEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREI 248 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 248 (366)
.++.|..+|....+ +.|. ...++.+...|.++|++++|+..+++.++. .|+ ...|+.+...|-..|+.+.|.+.
T Consensus 369 ~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 369 KIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred cchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 99999999999988 4443 567899999999999999999999999876 566 57899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHH
Q 017743 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYT 307 (366)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 307 (366)
+.+....++. -...++.|...|-..|+..+|+.-++...+. +|| +..|..++.+.-
T Consensus 445 y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 445 YTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHH
Confidence 9999987654 3678899999999999999999999999875 555 456666666643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-13 Score=128.51 Aligned_cols=309 Identities=10% Similarity=0.007 Sum_probs=199.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHH
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 87 (366)
.+...+..+...+.+.|++++|.++|+...+. .|+ ...+..+...+. ..++.++|+..+++..... +.+..
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~----~~g~~~eA~~~l~~~l~~~--P~~~~ 118 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLA----DAGQYDEALVKAKQLVSGA--PDKAN 118 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC--CCCHH
Confidence 34446788888888889999999988888765 343 344455555555 4455888888888887532 44555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH----------------------
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS---------------------- 145 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~---------------------- 145 (366)
+..+..++...|+.++|...++++.+.. +.+...+..+..++...+..++|++.++
T Consensus 119 -~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r 196 (765)
T PRK10049 119 -LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVR 196 (765)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 7788888888888999988888888764 2244444555555555555554443333
Q ss_pred ------------------------HHHHC-CCCCCHH-HHH----HHHHHHhccCChhHHHHHHHHHHhcCCC-CCHHHH
Q 017743 146 ------------------------RMKSN-QCKPDII-TFN----LLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTF 194 (366)
Q Consensus 146 ------------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 194 (366)
.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+...+.. |+. ..
T Consensus 197 ~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~ 275 (765)
T PRK10049 197 LSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQ 275 (765)
T ss_pred hhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HH
Confidence 33321 1112111 111 1123345667888888888888776432 322 12
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-----------CCC
Q 017743 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTP---SFITYECIITMYGYCDNVSRAREIFDELSKLGK-----------DMK 260 (366)
Q Consensus 195 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~ 260 (366)
..+...|...|++++|...|+.+.+..... .......+..++...|++++|...++.+....+ .|+
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 224667788888888888888876543111 124455666677788888888888888776532 122
Q ss_pred ---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh
Q 017743 261 ---VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 261 ---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
...+..+...+...|++++|+++++++.... +.+...+..+...+...|++++|+..+++..+. .|+.
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~ 426 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRN 426 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCC
Confidence 2345566777778888888888888877664 335777778888888888888888888887773 3554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-13 Score=126.55 Aligned_cols=320 Identities=13% Similarity=0.045 Sum_probs=230.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (366)
.+...+..++..+...|++++|+..++++.+. .|+...+..+-.++. ..++.++|+..++++.+.. +.+...
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~----~~g~~~~Al~~l~~al~~~--P~~~~~ 152 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYK----RAGRHWDELRAMTQALPRA--PQTQQY 152 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 34667778888899999999999999999876 444333555555555 4455899999999988642 445556
Q ss_pred HHHHHHHHHhcCCHHHHHHHH----------------------------------------------HHHHHc-CCCCCh
Q 017743 89 YNILLRACAQARNVDQVNALF----------------------------------------------KELHES-ILAPDI 121 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~----------------------------------------------~~~~~~-~~~~~~ 121 (366)
+..+...+...+..+.|.+.+ +.+.+. ...|+.
T Consensus 153 ~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~ 232 (765)
T PRK10049 153 PTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA 232 (765)
T ss_pred HHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 666666666666655444333 333322 111221
Q ss_pred h-hHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC---CHH
Q 017743 122 Y-TYN----GVMDAYGKNGMIKEMESVLSRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP---TLP 192 (366)
Q Consensus 122 ~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 192 (366)
. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+.+|+++....... ...
T Consensus 233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 233 TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 1 111 1134456779999999999999887532 332 22335778999999999999999987653221 134
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKY-----------TPS---FITYECIITMYGYCDNVSRAREIFDELSKLGKD 258 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (366)
....+..++...|++++|..+++.+..... .|+ ...+..+...+...|++++|..+++.+....+.
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 566677788999999999999999887531 123 235567778888999999999999999987655
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 017743 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338 (366)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 338 (366)
+...+..+...+...|++++|++.+++..... +.+...+...+..+...|++++|..+++++++. .|+......+=
T Consensus 392 -n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 392 -NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 68899999999999999999999999998865 234677778888899999999999999999984 46655544444
Q ss_pred HHh
Q 017743 339 ETF 341 (366)
Q Consensus 339 ~~~ 341 (366)
+..
T Consensus 468 ~~~ 470 (765)
T PRK10049 468 RAR 470 (765)
T ss_pred HHH
Confidence 443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-13 Score=127.15 Aligned_cols=304 Identities=12% Similarity=0.027 Sum_probs=226.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C-CCCChhhHHHHHHHHhhchH---------------------HHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-G-CRPDPSVYNALITAHLHTRD---------------------KAKAL 66 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g-~~p~~~~~~~ll~~~~~~~~---------------------~~~~~ 66 (366)
+......+.-...+.|+.++|..+|+..... + ..++.....-++..+..... -.+++
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 4455555666677899999999999998763 1 12223333355555543321 02222
Q ss_pred HHH---HHHHHHHhcCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 67 AKA---LGYFQKMKGMERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 67 ~~a---~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
.++ ...+..... ..++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|.
T Consensus 455 ~~~~~~~~~~~~al~--~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 455 PGIADNCPAIVRLLG--DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhHHHHHHhcc--cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 222 223333332 1144 67788888888876 8888999988888765 356544444455557899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
..++++... +|+...+..+..++.+.|++++|...++...... +.....+..+.......|++++|...+++..+.
T Consensus 530 ~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l- 605 (987)
T PRK09782 530 AAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI- 605 (987)
T ss_pred HHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-
Confidence 999998665 4455556777888899999999999999998864 223334444444555669999999999999987
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 301 (366)
.|+...+..+..++.+.|+.++|...++......+. +...++.+..++...|++++|+..+++..+..+ -+...+..
T Consensus 606 -~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~n 682 (987)
T PRK09782 606 -APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQ 682 (987)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 467888999999999999999999999999998765 778889999999999999999999999988753 36788999
Q ss_pred HHHHHHhhchHHHHHHHHHHHHhC
Q 017743 302 LYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+..++...|++++|...+++..+.
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999874
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.9e-17 Score=132.21 Aligned_cols=255 Identities=15% Similarity=0.099 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
..|++++|+++++........+.+...|..+...+...++++.|.+.++++...+.. +...+..++.. ...+++++|.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccc
Confidence 445577777777443321101233444555555666677777777777777765432 44555566655 5677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK-EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
+++....+. .++...+..++..+...++++.+.++++.+.... .+.+...|..+...+.+.|+.++|...+++..+.
T Consensus 98 ~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 98 KLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777665544 2455556667777777777777777777765432 2345666777777777777777777777777766
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH
Q 017743 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300 (366)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 300 (366)
. +.+......++..+...|+.+++..+++...+.. +.++..+..+..+|...|+.++|...+++..... +.|+.+..
T Consensus 176 ~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~ 252 (280)
T PF13429_consen 176 D-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLL 252 (280)
T ss_dssp --TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHH
T ss_pred C-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccc
Confidence 3 3346667777777777777777777777766653 2355567777777777788888888877777654 33677777
Q ss_pred HHHHHHHhhchHHHHHHHHHHHH
Q 017743 301 LLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
.+..++...|+.++|..+.++..
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHT----------------
T ss_pred ccccccccccccccccccccccc
Confidence 77777777888887777766654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=130.29 Aligned_cols=269 Identities=15% Similarity=0.128 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (366)
|+...+ .+...+.+.|++++|+++++........|+...|-.++..++ ...++.+.|...++++...+ +-+...
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La---~~~~~~~~A~~ay~~l~~~~--~~~~~~ 80 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLA---WSLGDYDEAIEAYEKLLASD--KANPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccc--cccccc
Confidence 444444 568888899999999999977665543455555554444333 25567999999999988643 335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHh
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYG 167 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 167 (366)
+..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred ccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 7777777 6889999999998877655 3566777888888999999999999999977543 3457788888899999
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 247 (366)
+.|+.++|++.+++.++.. +.|......++..+...|+.+++..+++...+.. +.++..+..+..++...|+.++|..
T Consensus 158 ~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccc
Confidence 9999999999999998863 3357788888999999999999888888887654 4555678889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.|+...+.++. |+.....+..++...|+.++|.++..+...
T Consensus 236 ~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 236 YLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHSTT--HHHHHHHHHHHT-----------------
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccc
Confidence 99999887544 888889999999999999999988877543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-13 Score=117.80 Aligned_cols=289 Identities=11% Similarity=0.017 Sum_probs=202.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCChhhHHHH-HHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHhc
Q 017743 23 KKGQTRLAMWLFSEMRNSGCRPDPSVYNAL-ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI--VTYNILLRACAQA 99 (366)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l-l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 99 (366)
..|+++.|.+.+....+. .|+...+-.+ -.+.. ..|+.+.|.+.+.+..+. .|+. .........+...
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~----~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQ----QRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQ 166 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHC
Confidence 578999999999887765 3443332222 22333 445589999999887652 3443 2344457888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---hccCChhHHH
Q 017743 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKME 176 (366)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~ 176 (366)
|+++.|...++.+.+.. +-+......+...+.+.|++++|.+.+..+.+.+..+.......-..++ ...+..+...
T Consensus 167 ~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 167 NELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999875 3366788888999999999999999999999886543322211111221 2223333334
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHH---HHHHHHHhhccCcHHHHHHHHH
Q 017743 177 QVFKSLMHSKE---KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT---YECIITMYGYCDNVSRAREIFD 250 (366)
Q Consensus 177 ~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~ 250 (366)
+.+..+..... +.+...+..+...+...|+.+.|.+++++..+.. |+... .....-.....++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 45555554322 1378888889999999999999999999998864 33321 1111122234577888888888
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 251 ELSKLGKDMKV--STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 251 ~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
...+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-..
T Consensus 324 ~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88776443 55 667788999999999999999999544444578888899999999999999999999987543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=9e-12 Score=114.38 Aligned_cols=190 Identities=11% Similarity=0.081 Sum_probs=98.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCcH
Q 017743 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-----KPTLPTFNSMIINYGKARLQ 207 (366)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~ 207 (366)
..++..++++.|+.+...+.+....+-..+.++|...+++++|..++..+..... .++......|.-++...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 3444444555555555444333334445555555556666666666665544321 12232334555555566666
Q ss_pred hHHHHHHHHHHhCCC-----------CC--CH-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 017743 208 GKAEYVFQKMTAMKY-----------TP--SF-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273 (366)
Q Consensus 208 ~~a~~~~~~~~~~~~-----------~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 273 (366)
++|..+++.+.+... .| |- ..+..++..+...|++.+|++.++.+....+. |......+...+..
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~ 462 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLA 462 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 666666665554210 01 11 22333444555556666666666666555433 55566666666666
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.|.+.+|...++...... +-+..+......++...+++.+|..+.+.+.+
T Consensus 463 Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 463 RDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred cCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 666666666665544432 22445555555666666666666666655544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-12 Score=102.59 Aligned_cols=217 Identities=14% Similarity=0.151 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCCHHH
Q 017743 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI------YTYNGVMDAYGKNGMIKE 139 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~ 139 (366)
.++|.++|-+|.+.+ +.+..+--+|.+.|.+.|..|.|+++.+.+.++ ||. .....|..-|...|-+|.
T Consensus 51 ~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 51 PDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 444555555444311 223333344444555555555555555544443 121 111223333444445555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCcHhHHHHHHH
Q 017743 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT----LPTFNSMIINYGKARLQGKAEYVFQ 215 (366)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~ 215 (366)
|+++|..+.+.+. --......|+..|-...+|++|+++-+++...+..+. ...|.-+...+....+.+.|..+++
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5555555444321 1233344444555555555555555554444333221 1123333333333444455555554
Q ss_pred HHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
+..+.+ +.....--.+.+.....|+++.|.+.++.+.+.++..-..+...|..+|.+.|+.++....+..+.+
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444432 1112222233344444455555555555555544444444444555555555555555555544444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-12 Score=121.03 Aligned_cols=262 Identities=8% Similarity=-0.049 Sum_probs=197.1
Q ss_pred hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 017743 46 PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125 (366)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (366)
...|..+-.++.. +..++|+..+.+.... .|+......+...+...|++++|...|+++... +|+...+.
T Consensus 477 ~~a~~~LG~~l~~-----~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 477 AAAWNRLAKCYRD-----TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred HHHHHHHHHHHHh-----CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 4445555544432 4577788877776643 466554444555567899999999999987654 45555667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 017743 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205 (366)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 205 (366)
.+..++.+.|++++|...+++..+.. +.+...+..+.......|++++|...+++..+. .|+...+..+...+.+.|
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCC
Confidence 77788889999999999999998764 223333334444455669999999999999874 456888888999999999
Q ss_pred cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 017743 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285 (366)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (366)
++++|...+++..... +.+...+..+..++...|++++|...++...+..+. +...+..+..++...|++++|+..++
T Consensus 624 ~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999875 455778888888999999999999999999887655 78889999999999999999999999
Q ss_pred HhhhCCCCCC-HHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 286 NSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 286 ~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
+..+.. |+ ..+.........+..+++.+.+-+++-..
T Consensus 702 ~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 702 LVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 998754 44 34444555556666667777766665544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-12 Score=99.90 Aligned_cols=303 Identities=11% Similarity=0.051 Sum_probs=223.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC--HHHHHH
Q 017743 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN--IVTYNI 91 (366)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 91 (366)
|-.-++. .-..+.++|.++|-+|.+. .|...-.+.-+..+.+ ..|..++|+++.+.+.+..+.+.+ ......
T Consensus 39 Yv~GlNf-LLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfR---sRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~q 112 (389)
T COG2956 39 YVKGLNF-LLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFR---SRGEVDRAIRIHQTLLESPDLTFEQRLLALQQ 112 (389)
T ss_pred HHhHHHH-HhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHH---hcchHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4434443 3457889999999999874 3333333333333332 556699999999999874333222 234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHh
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD----IITFNLLIDSYG 167 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 167 (366)
|.+-|...|-+|.|.++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+. ...|..+...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 7788999999999999999998865 23556788899999999999999999999988765544 235666777777
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 247 (366)
...+.+.|..++.+..+.+.. ++..--.+.......|++..|.+.++.+.+.+..--..+...|..+|...|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 889999999999999886432 4445556677788999999999999999988655556788999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh---hchHHHHHHHHHHHHh
Q 017743 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK---ANMKELVQKLLKRMEQ 324 (366)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~ 324 (366)
.+..+.+....+ ..-..+........-.+.|...+.+-... +|+...+..++..-.. .|...+-...++.|..
T Consensus 271 fL~~~~~~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 271 FLRRAMETNTGA--DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHccCCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 999998875443 34444555444555566676666655554 6999999999987644 4557777888888876
Q ss_pred CCCC
Q 017743 325 NGIV 328 (366)
Q Consensus 325 ~g~~ 328 (366)
..++
T Consensus 347 e~l~ 350 (389)
T COG2956 347 EQLR 350 (389)
T ss_pred HHHh
Confidence 5443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-12 Score=111.50 Aligned_cols=273 Identities=8% Similarity=0.001 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHH
Q 017743 63 AKALAKALGYFQKMKGMERCKPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN--GVMDAYGKNGMIKE 139 (366)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~ 139 (366)
.|+++.|.+.+....+. .+++. .|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 36688999888876642 22333 3444455668999999999999999875 45554333 33678889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHhcCcHhHHHH
Q 017743 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP-------TFNSMIINYGKARLQGKAEY 212 (366)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~ 212 (366)
|...++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999998886 3478888999999999999999999999999876553321 23333433344455566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 017743 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292 (366)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 292 (366)
+++.+.+. .+.++.....+...+...|+.++|.++++...+.. ++.... ++.+....++++++.+..+...+...
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 66666443 25578888999999999999999999999998853 344322 34444566999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcccccCC
Q 017743 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 349 (366)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 349 (366)
-|...+..+.+.|.+.+++++|.+.|+...+ ..|+...+..+-..+...|....
T Consensus 326 -~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 326 -DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHH
Confidence 3677888999999999999999999999998 46999998888888888877543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.6e-12 Score=103.76 Aligned_cols=312 Identities=12% Similarity=0.079 Sum_probs=226.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHH
Q 017743 19 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP-NIVTYNILLRACA 97 (366)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 97 (366)
.++....+.+++.+-.+.....|.. +..-+.+.+.++.. ...++++|+.+|+++.+.+.... |..+|..++ |+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~-~~~~i~~~~A~~~y---~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv 308 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFP-NSMYIKTQIAAASY---NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-ccHHHHHHHHHHHh---hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HH
Confidence 4455556777777777777777654 33333333333321 34458888888888887543322 456777766 44
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 017743 98 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177 (366)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 177 (366)
+..+-..+ .+.+-...--+.-+.|...+.+-|+-.++.++|...|+...+.+.. ....|+.+.+-|...++...|++
T Consensus 309 ~~~~skLs--~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKSKLS--YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhHHHH--HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 43322211 1111111111234557777788888899999999999999987533 67889999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC
Q 017743 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257 (366)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (366)
-++..++- .+.|-..|..+.++|.-.+.+.-|+-.|++..+.. +-|...|.+|..+|.+.++.++|.+.|......|-
T Consensus 386 sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99999886 34488999999999999999999999999999875 66789999999999999999999999999998763
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh----CCCCCC--HHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh
Q 017743 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHN----MGVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
. +...+..|.+.|-+.++.++|...|.+.++ .|...+ ...-..|...+.+.+++++|..+....... .+..
T Consensus 464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~ 540 (559)
T KOG1155|consen 464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETEC 540 (559)
T ss_pred c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchH
Confidence 3 668899999999999999999988887664 233322 223334667788999999998877666654 4555
Q ss_pred hHHHHHHHHhhcc
Q 017743 332 RFFLEALETFSSS 344 (366)
Q Consensus 332 ~~~~~ll~~~~~~ 344 (366)
.--..+++.+.+.
T Consensus 541 eeak~LlReir~~ 553 (559)
T KOG1155|consen 541 EEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHHh
Confidence 5566666665544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-11 Score=113.55 Aligned_cols=294 Identities=10% Similarity=0.046 Sum_probs=210.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCh--hhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 017743 19 AVMGKKGQTRLAMWLFSEMRNSGCRPDP--SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96 (366)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (366)
-...+.|+++.|++.|++..+. .|+. ..+ .++..+... |+.++|+..+++... ..+........+...+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~----G~~~~A~~~~eka~~--p~n~~~~~llalA~ly 112 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWA----GRDQEVIDVYERYQS--SMNISSRGLASAARAY 112 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHc----CCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHH
Confidence 3466899999999999999876 4554 234 666666643 558899999998873 1133344444446688
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 017743 97 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 176 (366)
...|++++|.++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHH
Confidence 88899999999999999875 335677777888889999999999999999876 556666655555555566776699
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHH-----------------------------------------
Q 017743 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ----------------------------------------- 215 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~----------------------------------------- 215 (366)
+.++++.+.. +.+...+..++.++.+.|-...|.++.+
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 9999998863 3355555556655555554444433333
Q ss_pred -------HHHhC-CCCCCH-H----HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 017743 216 -------KMTAM-KYTPSF-I----TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282 (366)
Q Consensus 216 -------~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 282 (366)
.+... +-.|.. . +..-.+-++...++..++++.|+.+...+.+....+-..+..+|...+.+++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 22211 111221 1 1223345667889999999999999988866556788899999999999999999
Q ss_pred HHHHhhhCC-----CCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 283 LFENSHNMG-----VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 283 ~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
++..+.... ..++......|.-++...+++++|..+++++.+.
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 999986543 1234444678899999999999999999999873
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-12 Score=111.16 Aligned_cols=281 Identities=15% Similarity=0.126 Sum_probs=207.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHhcCCHH
Q 017743 26 QTRLAMWLFSEMRNSGCRPDP-SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQARNVD 103 (366)
Q Consensus 26 ~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 103 (366)
+..+|...|..+... .++. .+...+-.+|. ....+++|.++|+.+.+..... .+...|.+.+-.+-+.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayF----El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---- 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYF----ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---- 403 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----
Confidence 567888888885543 3333 33445555565 5566889999998887654332 3566777776544321
Q ss_pred HHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHH
Q 017743 104 QVNAL-FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP-DIITFNLLIDSYGKRQAFDKMEQVFKS 181 (366)
Q Consensus 104 ~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 181 (366)
-+... -+.+.+.. +-.+.+|-++..+|.-+++.+.|++.|+...+. .| ...+|+.+..-+.....+|.|...|+.
T Consensus 404 v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 404 VALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 12222 22333332 446789999999999999999999999998876 34 678888888888889999999999998
Q ss_pred HHhcCCCCCHH---HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC
Q 017743 182 LMHSKEKPTLP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258 (366)
Q Consensus 182 ~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (366)
.+. .|+. .|.-+...|.+.++++.|+-.|++..+.+ +-+.+....+...+-+.|+.++|++++++....+.+
T Consensus 481 Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 481 ALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred hhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 854 3444 44456677889999999999999988876 456677778888888999999999999998887665
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
|+..--..+..+...+++++|+..++++++.- +-+...|..+.+.|.+.|+.+.|+.-|.-+.+..
T Consensus 556 -n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 556 -NPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred -CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55555556677778899999999999998852 3356778888889999999999998888887744
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-11 Score=97.20 Aligned_cols=287 Identities=12% Similarity=0.074 Sum_probs=215.9
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHH
Q 017743 24 KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103 (366)
Q Consensus 24 ~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (366)
.|+|.+|..+..+-.+.+-. .+.+.++.+-+- ...|+.+.+-.++.+..+.. -.++...+-+..+.....|+.+
T Consensus 97 eG~~~qAEkl~~rnae~~e~---p~l~~l~aA~AA--~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ---PVLAYLLAAEAA--QQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc---hHHHHHHHHHHH--HhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCch
Confidence 58999999998887776533 333444433221 24566888889998887631 2456667778888899999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCChhHHH
Q 017743 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI-------ITFNLLIDSYGKRQAFDKME 176 (366)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~ 176 (366)
.|..-++++.+.+ +-+.........+|.+.|++.+...++..+.+.|.-.+. .+|..+++-....+..+.-.
T Consensus 171 aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 171 AARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 9999999888875 346777888889999999999999999999988865443 45666777666666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
..++..-.. ...++..-..++.-+.+.|+.++|.++.++..+.+..|+ ...+ -.+.+.++...-.+..+...+.-
T Consensus 250 ~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 250 TWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC
Confidence 666666443 445667777888888999999999999999988876666 2222 23456677777777776665543
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+. ++..+.+|...|.+++.|.+|...|+...+ ..|+..+|..+..++.+.|+..+|..+.++..-.
T Consensus 325 ~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 PE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 22 557888999999999999999999997776 4789999999999999999999999988887643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-12 Score=111.55 Aligned_cols=270 Identities=12% Similarity=0.025 Sum_probs=208.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGC--RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~--~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
+...+..+|...+++++|..+|+.+.+... --+...|...+..+- +...----|..+.+.. +..+.+|.
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~Laq~Li~~~------~~sPesWc 425 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYLAQDLIDTD------PNSPESWC 425 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHHHHHHHhhC------CCCcHHHH
Confidence 445677899999999999999999987521 126678888876542 1111112222233222 45678999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (366)
++.++|.-.++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+........ +-..|.-+...|.+.+
T Consensus 426 a~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 426 ALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQE 503 (638)
T ss_pred HhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccc
Confidence 99999999999999999999999864 227788999999999999999999999998754211 3344555677899999
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 017743 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (366)
+++.|+-.|++..+-++. +......+...+.+.|+.++|++++++..... +.|+..--..+..+...++.++|+..++
T Consensus 504 k~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELE 581 (638)
T ss_pred hhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence 999999999999885433 56666777888889999999999999998776 3344444445556667899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
++++.-++ +...+-.+...|.+.|+.+.|+.-|.-+.+.+.++..
T Consensus 582 eLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 582 ELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99997544 6778889999999999999999999988887655543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-11 Score=106.10 Aligned_cols=282 Identities=9% Similarity=-0.024 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAPDIY--TYNGVMDAYGKNGMIK 138 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~ 138 (366)
..|+++.|.+.+.+..+. .|+ ...+-....+....|+.+.|.+.+.+..+.. |+.. ........+...|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 446799999999887753 454 3445556788888999999999999987653 4443 3444578888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCcHhHHHHHHH
Q 017743 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY---GKARLQGKAEYVFQ 215 (366)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~~~~~~a~~~~~ 215 (366)
.|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..++......-..++ ...+..+.+.+.+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999885 3367788899999999999999999999999886543332212111222 22233333344555
Q ss_pred HHHhCC---CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 216 KMTAMK---YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST-LNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 216 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
.+.+.. .+.+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++...+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 544432 123788899999999999999999999999998754422111 1112222234577888999998887753
Q ss_pred CCCCH--HHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcccccCCC
Q 017743 292 VTPDS--STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350 (366)
Q Consensus 292 ~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~ 350 (366)
+-|+ ....++...+.+.|++++|.+.|+........|+...+..+-..+...|.....
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 2244 566789999999999999999999655555679998888888888888776443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-11 Score=99.06 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (366)
+.|+..+.+-|+-.++.++|...|++.++.+. .....|+.+..-|....+...|.+-++..++.+ +.|...|-.|.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 34455556666777889999999999988643 356789999999999999999999999999986 6788999999999
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 315 (366)
|...+...-|+-.|++.....+. |...|.+|..+|.+.++.++|++.|......| ..+...+..|.+.+-+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999987554 89999999999999999999999999999877 33778999999999999999999
Q ss_pred HHHHHHHHh
Q 017743 316 QKLLKRMEQ 324 (366)
Q Consensus 316 ~~~~~~m~~ 324 (366)
...|.+-++
T Consensus 486 a~~yek~v~ 494 (559)
T KOG1155|consen 486 AQYYEKYVE 494 (559)
T ss_pred HHHHHHHHH
Confidence 999888765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-11 Score=108.61 Aligned_cols=271 Identities=8% Similarity=-0.047 Sum_probs=189.2
Q ss_pred ChhhHHHHHHHHhhch-HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Q 017743 45 DPSVYNALITAHLHTR-DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ---------ARNVDQVNALFKELHE 114 (366)
Q Consensus 45 ~~~~~~~ll~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 114 (366)
+...|...+.+..... ...+.+++|+..|++..+.. +.+...|..+..++.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 4445556666532211 13456889999999988643 3345566666655442 2458899999999998
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHH
Q 017743 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194 (366)
Q Consensus 115 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 194 (366)
.. +-+..++..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+..+. +...+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 75 3367778888888899999999999999998875 335677888889999999999999999999886443 22333
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 195 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
..++..+...|++++|...+++......+-+...+..+..++...|+.++|...+..+...... +....+.+...|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhcc
Confidence 3344456678999999999999876542224556777888888999999999999987765332 455566676777777
Q ss_pred CChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 275 GLPTEADLLFENSHNM-GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 275 g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
| ++|...++.+.+. +-.|...-+ +...+.-.|+.+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 4777777766543 112222222 44445556777777666 7777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-11 Score=97.42 Aligned_cols=197 Identities=11% Similarity=0.089 Sum_probs=107.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 017743 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203 (366)
Q Consensus 124 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 203 (366)
+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 3444444444455555555544444332 1233444444455555555555555555554432 1233444445555555
Q ss_pred cCcHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 017743 204 ARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 282 (366)
.|++++|...++....... +.....+..+..++...|++++|...++...+.... +...+..+...+...|++++|..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554321 112334555566666667777777777666655433 45566666667777777777777
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 283 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.+++.... .+.+...+..+...+...|+.+.|..+.+.+.+
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77766655 233455566666666677777777766666544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-11 Score=101.61 Aligned_cols=207 Identities=11% Similarity=0.077 Sum_probs=161.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHH
Q 017743 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213 (366)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 213 (366)
.|++++|.+.+++.......-....|+ +.-.+-..|+.++|++.|-++..- ...+......+...|....+...|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 578889999998887653222222222 333466789999999999887553 344677777888888888999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 017743 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293 (366)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 293 (366)
+.+.... ++.|+.+.+.|...|-+.|+-..|.+.+-.--+. ++.+..+...|...|....-+++++.+|++..- ++
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 8877654 4667889999999999999999998876554443 455888889999999999999999999998754 68
Q ss_pred CCHHHHHHHHHHHH-hhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccccc
Q 017743 294 PDSSTYKLLYKAYT-KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 294 p~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 347 (366)
|+..-|..++..|. +.|++..|..+|+...++ ++-|..++.-+++.+...|..
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 99999998888765 579999999999998764 667788888888888777654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-11 Score=98.80 Aligned_cols=282 Identities=11% Similarity=0.077 Sum_probs=207.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 017743 19 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98 (366)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (366)
..+.++|+++.|++++.-+.+..-+.-+..-+.|-..+.-. ...++..|.++-+.....+ .-|......-......
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq--ggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ--GGKDFADAQQYADIALNID--RYNAAALTNKGNIAFA 502 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh--cccchhHHHHHHHHHhccc--ccCHHHhhcCCceeee
Confidence 45778999999999998887543222222222222211111 1234777777777766433 3344444334444556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 017743 99 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 178 (366)
.|+++.|...|.+.+...-.-....| .+.-.+-..|++++|++.|-++... +..+..+...+...|-...+...|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 89999999999999875322111222 2233466789999999999887543 234788888889999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC
Q 017743 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (366)
+.+.... ++.|+...+.+...|-+.|+-..|.+.+-.--+. ++.+..+...|...|....-+++++..|+...- +.
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 9887654 6678999999999999999999999887665544 467788999999999999999999999998765 67
Q ss_pred CCHHHHHHHHHHHH-hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhch
Q 017743 259 MKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311 (366)
Q Consensus 259 ~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 311 (366)
|+..-|..++..|. +.|++.+|.++++...+. ++-|......|++.+...|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 89999998886654 589999999999998765 56689999999998877664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.51 E-value=5e-11 Score=95.35 Aligned_cols=202 Identities=11% Similarity=0.028 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 163 (366)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 345677888889999999999999999988764 3356777888889999999999999999988764 33567778888
Q ss_pred HHHhccCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH
Q 017743 164 DSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242 (366)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (366)
..+...|++++|.+.+++...... ......+..+...+...|++++|...+.+..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 889999999999999999876432 2234567777888889999999999999988764 34566788888999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
++|...++...+.. ..+...+..+...+...|+.++|..+++.+..
T Consensus 186 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999988763 34667777888888899999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-10 Score=104.43 Aligned_cols=269 Identities=12% Similarity=-0.004 Sum_probs=187.0
Q ss_pred CHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhch-----HHHHHHHHHHHHHHHHhc
Q 017743 10 DTGIYSKLIAVMGK-----KGQTRLAMWLFSEMRNSGCRPDPS-VYNALITAHLHTR-----DKAKALAKALGYFQKMKG 78 (366)
Q Consensus 10 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~-----~~~~~~~~a~~~~~~~~~ 78 (366)
+...|...+.+... .+++++|.+.|++..+. .|+.. .|..+-.++...+ ...+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555555322 23568999999999876 56543 3443333322111 134568999999999886
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 017743 79 MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158 (366)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (366)
.. +.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...
T Consensus 333 ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 333 LD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 43 5577888889899999999999999999999875 335677888899999999999999999999887433 2333
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhh
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYG 237 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 237 (366)
+..++..+...|++++|...+++......+.+...+..+..++...|+.++|...+.++... .|+ ....+.+...++
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 33444456678999999999999877533335566777888888999999999999987655 344 444556666677
Q ss_pred ccCcHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 238 YCDNVSRAREIFDELSKLG-KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
..| +.|...++.+.+.. -.+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 47777777766531 11222222 44445556776766655 7776654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-10 Score=92.91 Aligned_cols=282 Identities=10% Similarity=0.015 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
..|++.+|++...+-.+.. +-....|..-+.+.-+.|+.+.+.+++.+.-+....++....-+........|+.+.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 4477999999998876532 33445677778888899999999999999987644556666777788899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHhcCcHhHHHHHH
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP-------TFNSMIINYGKARLQGKAEYVF 214 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~ 214 (366)
.-+.++.+.+.. ++........+|.+.|++.....++..+.+.+.-.+.. +|..+++-....+..+.-...|
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999887644 77888999999999999999999999999998766543 5666666666666666666677
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 017743 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294 (366)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 294 (366)
+..... .+.++..-.+++.-+..+|+.++|.++..+..+++..|+ -...-.+.+-++...-++..++..+.. +-
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 766544 255667778888889999999999999999999887765 222334566778887777777766543 23
Q ss_pred CHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcccccCCCCCcc
Q 017743 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354 (366)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 354 (366)
++..+.+|-+.|.+.+.|.+|...|+...+ ..|+..+|..+-.++...|.........
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHH
Confidence 568899999999999999999999997777 5699999999999999888875444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-09 Score=96.95 Aligned_cols=306 Identities=12% Similarity=0.064 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
....-.....+.-.|++++|.+++.+.+... +.....|-.|-..|- ..|+.++++..+-..... .+.|...|.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyE----qrGd~eK~l~~~llAAHL--~p~d~e~W~ 211 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYE----QRGDIEKALNFWLLAAHL--NPKDYELWK 211 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHH----HcccHHHHHHHHHHHHhc--CCCChHHHH
Confidence 3444444555566699999999999998763 235667888877776 444588988887776643 366778999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHH
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF----NLLIDSY 166 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~ 166 (366)
.+.....+.|.++.|.-.|.+.++.. +++...+---...|-+.|+...|.+-|.++.+...+.|..-+ ..+++.+
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875 456666666778899999999999999999887432232222 3345666
Q ss_pred hccCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC---------------------
Q 017743 167 GKRQAFDKMEQVFKSLMHS-KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP--------------------- 224 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------- 224 (366)
...++-+.|.+.++..... +-..+...++.++..+.+...++.+......+......+
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 7777778888888877652 233456677888888888888888888877766521122
Q ss_pred ------CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 225 ------SFITYECIITMYGYCDNVSRAREIFDELSKLG--KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 225 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
+..++ .+.-++......+....+...+...+ +.-+...|.-+..++...|++.+|+.+|..+......-+.
T Consensus 371 ~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 371 GKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 22221 12223333343344444444455444 4446677888888999999999999999988876545567
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 297 STYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
..|..+.++|...|.+++|.+.|++.+..
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 78888889999999999999999988873
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=80.69 Aligned_cols=49 Identities=37% Similarity=0.540 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 57 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 57 (366)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999999999999999999999999999999986
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-11 Score=97.47 Aligned_cols=230 Identities=9% Similarity=-0.018 Sum_probs=196.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
-+-+.++|.+.|.+.+|.+.++..++. .|-+.||..|-+.|.+..+++.|+.++.+-.+. ++-++.....+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 467889999999999999999998876 567789999999999999999999999998876 34455555667788888
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 248 (366)
.++.++|.++|+...+. .+.++.....+...|.-.++++-|...++++.+.| .-++..|..+.-+|...+++|-++..
T Consensus 303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999999886 34577777788888889999999999999999999 45788899999999999999999999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 249 FDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 249 ~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
|++....--.| -..+|-.+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99887653323 3567888888888999999999999998887633 678899999889999999999999998776
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.7e-12 Score=109.78 Aligned_cols=268 Identities=15% Similarity=0.173 Sum_probs=142.5
Q ss_pred cccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCC
Q 017743 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 83 (366)
Q Consensus 4 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 83 (366)
..|+.|+..||..+|.-||..|+.+.|- +|..|.-+....+...++.++.+....++ .+.+. .
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And----~Enpk------------e 80 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAND----AENPK------------E 80 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccccc----ccCCC------------C
Confidence 3456666666666666666666666665 66666554444444555555544432222 22111 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHH
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLL 162 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l 162 (366)
|...+|..|..+|...||+.. ++..++ -...+...+...|.-.....++..+.- .+.-||..+ .
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence 555566666666666666544 122211 111223333444444444444443221 122233322 2
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (366)
+....-.|-++.+.+++..+-..... . .+..+++-+... .....++........-.|+..+|..++.+-...|+.
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCch
Confidence 23333445566666555444211000 0 111123332222 222333333222221147778888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhch
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 311 (366)
+.|..++.+|.+.|+..+.+-|-.|+-+ .++...++.++..|.+.|+.|+..|+...+..+..+|.
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888888888877777766666655 67777777778888888888888888777777777554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-10 Score=99.36 Aligned_cols=312 Identities=13% Similarity=0.071 Sum_probs=219.0
Q ss_pred ccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC
Q 017743 5 RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84 (366)
Q Consensus 5 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 84 (366)
+...||+.+- +-..+.+.|+.+.|+..|....+. .|+...-...+..+-........+..+..++...-... +.
T Consensus 195 p~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~ 268 (1018)
T KOG2002|consen 195 PACKADVRIG--IGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NE 268 (1018)
T ss_pred cccCCCccch--hhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CC
Confidence 4445554332 235566777788888888777764 33222211222222112223455777777777776543 56
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILA--PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
|+...+.|...|.-.|++..++.+...+...... .-...|..+.++|...|++++|..+|.+..+..-...+..+.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 7788999999999999999999999988875311 12355888999999999999999999998876322223445567
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR----LQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (366)
.+.+.+.|+.+.+...|+.+... .+.+..+...+...|...+ ..+.|..++.+..+.. +.|...|-.+...+..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 88999999999999999999886 3446677777776666654 5567777777777654 5567788888877764
Q ss_pred cCcHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---CCC------CCHHHHHHHHHH
Q 017743 239 CDNVSRAREIFDELS----KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVT------PDSSTYKLLYKA 305 (366)
Q Consensus 239 ~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~------p~~~~~~~l~~~ 305 (366)
++...++..|..+. ..+..+.+...|.+...+...|++++|...|...... ... ++..+-..+.+.
T Consensus 427 -~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 -TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred -cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 44444476666543 4555577899999999999999999999999987754 112 233344456667
Q ss_pred HHhhchHHHHHHHHHHHHhC
Q 017743 306 YTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~ 325 (366)
.-..++++.|.+.|+.+.+.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHH
Confidence 77788999999999999875
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-09 Score=96.25 Aligned_cols=329 Identities=11% Similarity=0.068 Sum_probs=240.9
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 86 (366)
+.+...|.+|...|-.+|+.+++...+-..-. ..| |...|..+-.... ..|.+.+|.-.|.+..+.. +++.
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~----~~~~i~qA~~cy~rAI~~~--p~n~ 241 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSE----QLGNINQARYCYSRAIQAN--PSNW 241 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHH----hcccHHHHHHHHHHHHhcC--Ccch
Confidence 34677899999999999999999877644433 344 5556666655554 5666999999999988643 6666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN----GVMDAYGKNGMIKEMESVLSRMKSN-QCKPDIITFNL 161 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 161 (366)
..+---+..|-+.|+...|...|.++.....+.|..-+. ..++.+...++.+.|.+.++..... +-..+...++.
T Consensus 242 ~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni 321 (895)
T KOG2076|consen 242 ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNI 321 (895)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHH
Confidence 666667788999999999999999999875433333333 3455666777779999988887663 22346677888
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCC---------------------------CCCHHHHHHHHHHHHhcCcHhHHHHHH
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKE---------------------------KPTLPTFNSMIINYGKARLQGKAEYVF 214 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~ 214 (366)
++..+.+...++.+......+..... .++..++ .+.-++...+..+....+.
T Consensus 322 ~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll 400 (895)
T KOG2076|consen 322 LAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALL 400 (895)
T ss_pred HHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHH
Confidence 99999999999999988887766211 2222221 2333455556666666677
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 017743 215 QKMTAMKYTP--SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292 (366)
Q Consensus 215 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 292 (366)
..+.+..+.| +...|.-+..++...|++.+|..+|..+......-+...|-.+..+|...|.+++|.+.|+..+...
T Consensus 401 ~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~- 479 (895)
T KOG2076|consen 401 HFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA- 479 (895)
T ss_pred HHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 7777666444 4568899999999999999999999999987655578899999999999999999999999998864
Q ss_pred CCCHHHHHHHHHHHHhhchHHHHHHHHHHHH--------hCCCCCChhHHHHHHHHhhcccc
Q 017743 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRME--------QNGIVPNKRFFLEALETFSSSLA 346 (366)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~~~ 346 (366)
+.+...-..|...+.+.|+.++|.+++..+. ..+..|+.+........+...|.
T Consensus 480 p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 480 PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 3356666778888899999999999999854 23455555544444444444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-10 Score=100.26 Aligned_cols=318 Identities=15% Similarity=0.150 Sum_probs=209.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH----hcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCC--CCC
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMR----NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME--RCK 83 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~ 83 (366)
|..+|-.+...+-. ++...++..|.... ..+..+.....|.+-..+. ..|.+++|...|......- ...
T Consensus 413 d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf----~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF----RLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred cHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH----HhcChHHHHHHHHHHhhhhhhhcC
Confidence 45555555544433 33333355555432 3444456666666665555 3344677777666655420 011
Q ss_pred CCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 017743 84 PNI------VTYNILLRACAQARNVDQVNALFKELHESILAPDI-YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156 (366)
Q Consensus 84 ~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 156 (366)
++. .+--.+....-..++.+.|.+.|..+.+. .|+- ..|.-++......+...+|...+....+.. ..++
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np 564 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNP 564 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCc
Confidence 222 12223444455556777777777777765 2332 233333333334567777888887776653 3466
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHh------------cCcHhHHHHHHHHHHhCCCC
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSK-EKPTLPTFNSMIINYGK------------ARLQGKAEYVFQKMTAMKYT 223 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~~~~~ 223 (366)
..++.+...+.+...+..|.+-|..+...- ..+|..+.-+|...|.+ .+..++|+++|.+.++.. +
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-p 643 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-P 643 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-c
Confidence 667777778888888888888777665532 22465555555554442 245678999999888775 5
Q ss_pred CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHHHHHHH
Q 017743 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM-GVTPDSSTYKLL 302 (366)
Q Consensus 224 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l 302 (366)
.+...-+.+.-.++..|++.+|..+|....+.... ...+|-.+.++|...|++..|+++|+...+. ...-+..+...|
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 67778888888899999999999999999987543 5678999999999999999999999987654 445578899999
Q ss_pred HHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHH
Q 017743 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337 (366)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 337 (366)
.+++.+.|++.+|.+.+.........-....|+..
T Consensus 723 ara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 99999999999999998888775433333444433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=95.89 Aligned_cols=229 Identities=11% Similarity=0.021 Sum_probs=177.1
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH-HHHH
Q 017743 50 NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY-NGVM 128 (366)
Q Consensus 50 ~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll 128 (366)
+.+-++|.+. |.+.+|.+.|+..... .|-+.||..|-+.|.+..++..|+.++.+-++. .|-.+|| .-+.
T Consensus 227 ~Q~gkCylrL----gm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRL----GMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHh----cChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 4555666643 4488888888776653 677888888888899889999998888887765 3444444 4566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHh
Q 017743 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208 (366)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 208 (366)
+.+-..++.++|.++++...+.. +.++.....+...|.-.++++.|+..|+++++.|+. +...|+.+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 77778888899999998887763 346666667777788888899999999998888775 7778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 209 KAEYVFQKMTAMKYTPS--FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 209 ~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
-++..|.+....--.|+ ..+|-.+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 88888888776543344 356777888888889999999999888877655 678888888888889999999999888
Q ss_pred hhhC
Q 017743 287 SHNM 290 (366)
Q Consensus 287 ~~~~ 290 (366)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 7664
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-13 Score=78.44 Aligned_cols=49 Identities=35% Similarity=0.569 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-09 Score=89.96 Aligned_cols=320 Identities=10% Similarity=0.029 Sum_probs=236.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
.+|+.-.+.|.+.+.++-|..+|...++- .| +...|......=- ..|..+....+|++... .++.....|.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek----~hgt~Esl~Allqkav~--~~pkae~lwl 588 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEK----SHGTRESLEALLQKAVE--QCPKAEILWL 588 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHH----hcCcHHHHHHHHHHHHH--hCCcchhHHH
Confidence 45666777788888888888888887764 33 3444544433221 33456777778888774 3455666677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (366)
.....+-..|++..|..++....+... -+...|..-+..-.....++.|..+|.+.... .|+..+|.--+....-.+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence 777788888999999999998888753 36778888888888999999999999988765 567777777777777788
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 017743 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (366)
..++|.+++++.++. .+.-...|..+.+.+-+.++.+.|...|..-.+.. +-....|-.|...=-+.|.+-.|..+++
T Consensus 666 ~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 666 NVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 899999999888875 34445677778888888888888888877666542 3445677777777778888999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC----C-------------------------CCCCHHHHHH
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM----G-------------------------VTPDSSTYKL 301 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-------------------------~~p~~~~~~~ 301 (366)
...-++++ +...|...|+.-.+.|+.+.|..+..+..+. | ...|+.+...
T Consensus 744 rarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVlla 822 (913)
T KOG0495|consen 744 RARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLA 822 (913)
T ss_pred HHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHH
Confidence 98888776 7888999999999999999887766554322 1 2335566666
Q ss_pred HHHHHHhhchHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccccc
Q 017743 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN-KRFFLEALETFSSSLAG 347 (366)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~ 347 (366)
+...|-...+++.|+++|.+.++.+ || ..+|..+.+-....|..
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCH
Confidence 7777788888999999999998754 43 45666677766666654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-11 Score=107.53 Aligned_cols=273 Identities=15% Similarity=0.158 Sum_probs=196.4
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017743 32 WLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 111 (366)
Q Consensus 32 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 111 (366)
..+-.+...|+.|+..||..+|.-||..|+ .+.|- +|.-|.- ...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gd----ieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGD----IEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCC----Ccccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC-----
Confidence 345667888999999999999999996665 77776 7877765 556778889999999999999887765
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc-CCCCC
Q 017743 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-KEKPT 190 (366)
Q Consensus 112 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 190 (366)
.|...||..|..+|...|++.. |+...+ ....+...+...|--.....++..+.-. +.-||
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence 6889999999999999999876 222222 2233444556666666555555554221 23344
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 269 (366)
... .+....-.|.++.+.+++..+..... .|..+ +++-+..... -..++........-.|+..+|.+++.
T Consensus 142 a~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~ 212 (1088)
T KOG4318|consen 142 AEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLK 212 (1088)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHH
Confidence 433 33344556777777777766543321 12211 2444443332 23333333333222579999999999
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccc
Q 017743 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345 (366)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 345 (366)
+-..+|+.+.|..++.+|.+.|++.+..-|..|+-+ .+....+..+++.|.+.|+.|+..|+...+..+.+.+
T Consensus 213 ~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 213 RALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 999999999999999999999999999888888866 7888889999999999999999999998888777743
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.3e-10 Score=93.36 Aligned_cols=274 Identities=12% Similarity=0.045 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
....+.+..++++.+.+.. ++...++..-|.++...|+..+-..+-.++.+. .|-...+|.++..-|...|+.++|.
T Consensus 256 ~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHH
Confidence 4455888888888887644 666667777777888888888887777787776 3557788999998888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
+.|.+....... =...|-.....|.-.|..++|...+...-+. .+-...-+--+.--|.+.+..+.|.++|.+.....
T Consensus 333 ry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 333 RYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 999988765322 3567888889999999999999888877654 11122222334455778899999999999888764
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKL----GKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 295 (366)
+.|+...+-+.-.....+.+.+|...|+..... +.+ .-..+++.|.++|.+.+.+++|+..+++.+.... -|
T Consensus 411 -P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~ 488 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KD 488 (611)
T ss_pred -CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-Cc
Confidence 566778888887777889999999999887632 111 1345688899999999999999999999888753 48
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 017743 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 344 (366)
..++..+.-.|...|+++.|.+.|.+..- +.|+..+...++..+...
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 89999999999999999999999998876 778888888877766544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-09 Score=91.04 Aligned_cols=292 Identities=16% Similarity=0.114 Sum_probs=203.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhH-HHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 017743 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY-NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95 (366)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~-~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (366)
....+...|++++|++.++.-... -+|...+ ...-..+. +.|+.++|..++..+.+.. +.|...|..+..+
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~----kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLL----KLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 445678899999999999875543 4555544 44444555 4555999999999998642 4455555566655
Q ss_pred HHhc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 017743 96 CAQA-----RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI-KEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169 (366)
Q Consensus 96 ~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (366)
.... .+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP 156 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence 5222 35778888898887652 4444333332222222233 3455667777778765 3566666667766
Q ss_pred CChhHHHHHHHHHHhc----C----------CCCCHH--HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 017743 170 QAFDKMEQVFKSLMHS----K----------EKPTLP--TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECI 232 (366)
Q Consensus 170 ~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 232 (366)
...+-..+++...... + .+|+.. ++..+...|...|++++|.+.+++.+++ .|+ ...|..-
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~K 234 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTK 234 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 6666666666665432 1 123432 4466678888999999999999999987 455 6788899
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH------HH--HHHHH
Q 017743 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS------TY--KLLYK 304 (366)
Q Consensus 233 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~ 304 (366)
.+.+-..|++.+|.+.++.....+.. |...-+-.+..+.+.|+.++|.+++....+.+..|-.. .| .-...
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998766 78888888999999999999999999988776544321 22 34556
Q ss_pred HHHhhchHHHHHHHHHHHHh
Q 017743 305 AYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~ 324 (366)
+|.+.|++..|++.|..+.+
T Consensus 314 a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 78899998888877665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-09 Score=87.49 Aligned_cols=196 Identities=10% Similarity=0.064 Sum_probs=139.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 017743 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203 (366)
Q Consensus 124 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 203 (366)
|-.+...|....+.++..+.|+.....+.. |..+|..-.+.+.-.+++++|..=|++.+... +-+...|-.+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHH
Confidence 555556677777777777777777766433 56667666677777777888888888776632 1234455555555567
Q ss_pred cCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhcCC
Q 017743 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD-------MKVSTLNAMLEAYCMNGL 276 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~ 276 (366)
.+.++++...|++.++. ++.-+..|+.....+...++++.|.+.|+...+.... +.+.+-.+++..- -.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhh
Confidence 78888888888888876 3445778888888999999999999999887764322 1122222233222 3378
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
+..|..++++..+.+.+ ....|..|...-.+.|+.++|+++|++-..
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88999999998887644 567788999999999999999999998765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-09 Score=89.17 Aligned_cols=290 Identities=10% Similarity=-0.021 Sum_probs=219.9
Q ss_pred cccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017743 6 WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (366)
+..-++.....-.+-+...+++.+..++++.+.+.. ++....+..-|..+...++...-+.-+-++.+. .|..
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~------yP~~ 311 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL------YPSK 311 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh------CCCC
Confidence 445566677777888889999999999999998753 445666666676666555544444444444433 3557
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (366)
+.+|-++.-.|...|+..+|.+.|.+....... =...|..+...|.-.|..++|...+....+.= +-..--+--+.--
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgme 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGME 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHH
Confidence 789999999999999999999999987754311 34578888999999999999999988776541 1111112223445
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC----C--CCCCHHHHHHHHHHhhcc
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM----K--YTPSFITYECIITMYGYC 239 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~ 239 (366)
|.+.++.+.|.+.|.+.... .+.|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 78899999999999998875 3446777777777777789999999999887632 1 112345789999999999
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
+.+++|+..++.......+ +..++.++.-.|...|+++.|.+.|++... +.|+-.+-..++..+..
T Consensus 469 ~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred hhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 9999999999999988655 899999999999999999999999998876 57888777777765443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-08 Score=87.20 Aligned_cols=305 Identities=10% Similarity=0.049 Sum_probs=171.9
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHH
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 87 (366)
+-+...|...+..=-..|..+....+|++.... -|....+-. .+++..-..|++..|..++....+.. +.+..
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwl---M~ake~w~agdv~~ar~il~~af~~~--pnsee 619 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWL---MYAKEKWKAGDVPAARVILDQAFEAN--PNSEE 619 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHH---HHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHH
Confidence 334445555555555555666666666655543 222222111 11222223344555555555554321 33445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (366)
.|...+..-..+..++.|..+|.+.... .|+...|..-+..---.+..++|.+++++..+. ++.-.-.|-.+.+.+-
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 5555555555556666666666555443 345555554444444455556666666555544 2222334444455555
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 247 (366)
+.++.+.|.+.|..-.+. .+.....|..+...--+.|..-.|..++++..-.+ +-+...|-..|++-.+.|+.+.|..
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 555555555555444332 33344445544444445555555555555554443 3344555555555555555555544
Q ss_pred HHHHHHhC----C-------------------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 017743 248 IFDELSKL----G-------------------------KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298 (366)
Q Consensus 248 ~~~~~~~~----~-------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 298 (366)
++....+. | ..-|+++...+...|....++++|.+.|.+..+.+ +.+..+
T Consensus 775 lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~ 853 (913)
T KOG0495|consen 775 LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDA 853 (913)
T ss_pred HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchH
Confidence 44333221 0 23367777888888889999999999999999876 336789
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 299 YKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
|..+...+.++|.-++-.+++......
T Consensus 854 wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 854 WAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 999999999999988888898887763
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-09 Score=93.03 Aligned_cols=238 Identities=18% Similarity=0.141 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHES-----I-LAPDIYT-YNGVMDAYGKNGMIKEMESVLSRMKSN-----QC- 152 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~- 152 (366)
..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677999999999999999999988765 2 1233333 344677888999999999999998642 21
Q ss_pred -CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc-----CC-CCCH-HHHHHHHHHHHhcCcHhHHHHHHHHHHhC---C
Q 017743 153 -KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-----KE-KPTL-PTFNSMIINYGKARLQGKAEYVFQKMTAM---K 221 (366)
Q Consensus 153 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~ 221 (366)
+.-..+++.|..+|.+.|++++|...+++..+- +. .|.+ ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 122456777888999999999999888876542 11 2222 24566777788899999999999876542 1
Q ss_pred CCCC----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh--
Q 017743 222 YTPS----FITYECIITMYGYCDNVSRAREIFDELSKLG-------KDMKVSTLNAMLEAYCMNGLPTEADLLFENSH-- 288 (366)
Q Consensus 222 ~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-- 288 (366)
..++ ..+++.|...|...|++++|.++++.+.... ..-....++.|...|.+.+.+.+|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1222 4578999999999999999999999876531 11224567889999999999999999888754
Q ss_pred --hCCC-CC-CHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 289 --NMGV-TP-DSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 289 --~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
..|+ .| ...+|..|...|...|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2332 12 35789999999999999999999988775
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.8e-09 Score=84.69 Aligned_cols=219 Identities=9% Similarity=-0.043 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 64 KALAKALGYFQKMKGMERCKPN--IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
...+.++..+.++.......|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3456666666666542222232 3456777777888888888888888887764 335677888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
..|+...+... .+..++..+..++...|++++|.+.|+...+.. |+..........+...+++++|...+.+.....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 88888877532 245667777777788888888888888887743 322211112222344567888888886654332
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC---CCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKD---MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
.|+...+ .+... ..|+...+ ..+..+.+. .+. .....|..+...+.+.|++++|...|++..+.+
T Consensus 196 -~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222221 22222 23444333 233333321 111 123467777777778888888888888777654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-08 Score=75.61 Aligned_cols=193 Identities=12% Similarity=0.045 Sum_probs=93.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 017743 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206 (366)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 206 (366)
|.-.|.+.|+...|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+-|++.+... +-+..+.|.....+|..|.
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 3344445555555555555555442 1134444445555555555555555555554431 1233444444444555555
Q ss_pred HhHHHHHHHHHHhCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 017743 207 QGKAEYVFQKMTAMKYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285 (366)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (366)
+++|...|++......-+ -..+|..+.-+..+.|+.+.|...|++..+.... .......+.......|++-.|...++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555544432111 1234555555555555555555555555554433 33444445555555555555555555
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 286 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
.....+. ++..+....|+.-...|+.+.+-++=..+.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5544442 455555555555555555555554444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-09 Score=80.80 Aligned_cols=201 Identities=11% Similarity=0.015 Sum_probs=169.6
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (366)
+...+.-.|...|++..|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..... +-+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34556778999999999999999999863 3367789999999999999999999999999875 455778899999999
Q ss_pred ccCcHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGK-DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 316 (366)
..|++++|...|+....... .--..+|..+.-+..+.|+++.|...|++..+.... ...+...+.+...+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 99999999999999887522 223578899999999999999999999999987633 5677888999999999999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhcccccCCCCCccchhhhhhh
Q 017743 317 KLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLS 362 (366)
Q Consensus 317 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~r~~~ 362 (366)
.+++.....+. ++.......|+.-...|+..........+.|.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99999988766 8999999999988888888777776666666553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.7e-09 Score=86.67 Aligned_cols=195 Identities=11% Similarity=0.070 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
|--+...|....+.++.++.|+...+.+ +-|..+|..-...+.-.+++++|..=|++..... +.+...|-.+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHH
Confidence 4444444555555555555555554443 2244444444444444455555555555544432 1133333344444444
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC-------CCHHHHHHHHHHhhccCc
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-------PSFITYECIITMYGYCDN 241 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~ 241 (366)
.++++++...|++.... .+..+..|+.....+...++++.|.+.|+..++.... +.+.+--.++..- =.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhh
Confidence 45555555555555443 3334445555555555555555555555544433100 1111111111111 1255
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
+..|..++....+.+++ ....|..|...-.+.|+.++|+++|++..
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55566666555555444 34455555555556666666666665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-08 Score=83.35 Aligned_cols=231 Identities=14% Similarity=-0.019 Sum_probs=161.9
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 017743 99 ARNVDQVNALFKELHESI-LAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (366)
.+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+... .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 346677777777777542 1222 35577888889999999999999999988753 3688999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
...|++..+..+ .+..++..+...+...|++++|.+.++...+.. |+..........+...++.++|...|......
T Consensus 118 ~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999999988532 256778888888999999999999999998864 43221222222334567899999999776543
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---CC--C-CCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCC
Q 017743 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GV--T-PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329 (366)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~--~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~ 329 (366)
. .++. |. ........|+...+ ..+..+.+. .+ . .....|..+...+...|++++|...|++..+.+. |
T Consensus 195 ~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~ 268 (296)
T PRK11189 195 L-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-Y 268 (296)
T ss_pred C-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-c
Confidence 2 2222 22 12233345666554 344444321 11 1 1346799999999999999999999999998653 3
Q ss_pred ChhHHHHHHH
Q 017743 330 NKRFFLEALE 339 (366)
Q Consensus 330 ~~~~~~~ll~ 339 (366)
|..-+...+-
T Consensus 269 ~~~e~~~~~~ 278 (296)
T PRK11189 269 NFVEHRYALL 278 (296)
T ss_pred hHHHHHHHHH
Confidence 5544444333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-07 Score=75.80 Aligned_cols=307 Identities=11% Similarity=0.088 Sum_probs=201.3
Q ss_pred ccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCC-CCC
Q 017743 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC-KPN 85 (366)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 85 (366)
..|+..+|++.|+.=.+...++.|..+|+..+-. .|+..+|-.....=. +.|.+..+..+|....+.-|- ..+
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~----k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEE----KHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 4788899999999888889999999999888754 577777655443322 223344444444433321110 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH--------------------------------------------HHHcCCCCCh
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKE--------------------------------------------LHESILAPDI 121 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~--------------------------------------------~~~~~~~~~~ 121 (366)
...|.+....=.++..++.|.-+|+- +++.+ +.|-
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nY 322 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCc
Confidence 22223332222223333333333322 22222 3456
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH--------HHhccCChhHHHHHHHHHHhcCCCCCH
Q 017743 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI--ITFNLLID--------SYGKRQAFDKMEQVFKSLMHSKEKPTL 191 (366)
Q Consensus 122 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~ 191 (366)
.+|-..++.-...|+.+...++|+..... ++|-. ..|...|- .-....+.+.+.++|+..++. ++...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCccc
Confidence 66777777777778888888888888765 33321 12222221 123467888888888888774 44455
Q ss_pred HHHHHHHHHH----HhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 192 PTFNSMIINY----GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267 (366)
Q Consensus 192 ~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (366)
.||..+--.| .++.+...|.+++-..+.. .|-..++...|..-.+.++++.+..+++...+.++. +-.+|...
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~ky 477 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKY 477 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHH
Confidence 5555443333 4567888888888776644 677888888888888899999999999999998766 77888888
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 268 LEAYCMNGLPTEADLLFENSHNMG-VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
...-...|+.+.|..+|+-.++.. +......|...|+.-...|.++.|..+|+++++.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 888888999999999999888742 1122455667777777899999999999999875
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.8e-08 Score=84.49 Aligned_cols=259 Identities=14% Similarity=0.186 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHh-----cC
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN-GVMDAYGK-----NG 135 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~-----~~ 135 (366)
..|.+++|++.+..-.. .+.............+.+.|+.++|..+|..+++.+ |+...|. .+..+..- ..
T Consensus 16 e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccc
Confidence 45669999999988663 344455667788999999999999999999999985 5555554 44444422 23
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHH
Q 017743 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF-DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214 (366)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 214 (366)
+.+....+++++...- |.......+.-.+.....+ ..+...+..+...|++ .+|+.+-..|.......-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 5788889999887763 3433333333223332333 3445566677777765 34555555565555555555555
Q ss_pred HHHHhC----C----------CCCCHH--HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 017743 215 QKMTAM----K----------YTPSFI--TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278 (366)
Q Consensus 215 ~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (366)
...... + -+|+.. ++..+.+.|...|++++|+..++..+++.+. .+..|..-...+-+.|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 554322 1 134443 4466678888999999999999999998655 5888999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh
Q 017743 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 279 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
+|.+.++.....+.. |...-+..+..+.+.|+.++|.+++....+.+..|..
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 999999999998755 8888888899999999999999999999887765444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-08 Score=88.40 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=116.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-
Q 017743 91 ILLRACAQARNVDQVNALFKELHES-----I--LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-----QC-KPDI- 156 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~- 156 (366)
.+...|...+++++|..+|+++... | .+--..+++.|..+|.+.|++++|...++...+. |. .|.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 4555666666666666666666542 1 1112344555566666667666666555544221 11 1222
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC-----C--C
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHS---KEKP----TLPTFNSMIINYGKARLQGKAEYVFQKMTAM-----K--Y 222 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~ 222 (366)
..++.+...+...+++++|..++....+. -+.+ -..+++.+...|...|++++|.++++..+.. + .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 23345555666677777777776654332 1111 2356777777788888888888777776543 1 1
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh----CCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 223 TPSFITYECIITMYGYCDNVSRAREIFDELSK----LGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
.-....++.+...|.+.++..+|.++|.+... .|+ +-...+|..|...|...|+++.|.++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11234667777777777777777777766432 222 1134567778888888888888887776654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-07 Score=78.10 Aligned_cols=306 Identities=11% Similarity=0.001 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC-RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
...|..+...+...|+.+.+...+........ .++...... +.+... ...+++++|.+.+++..+.. +.+...+
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~a~~~--~~~g~~~~A~~~~~~~l~~~--P~~~~a~ 80 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH-VEALSA--WIAGDLPKALALLEQLLDDY--PRDLLAL 80 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH-HHHHHH--HHcCCHHHHHHHHHHHHHHC--CCcHHHH
Confidence 44566677777788889888777777654321 222222221 222111 14456889999999877532 4444454
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 90 NILLRACAQ----ARNVDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 90 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
.. ...+.. .+..+.+.+.+... ....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 42 222222 44555555555441 112233 3344455678889999999999999999875 335677888899
Q ss_pred HHhccCChhHHHHHHHHHHhcCCC-CCH--HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHhh
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEK-PTL--PTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPSFITY-E--CIITMYG 237 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~ 237 (366)
.+...|++++|...+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 999999999999999998775322 232 3455678889999999999999999864432 1222111 1 2233333
Q ss_pred ccCcHHHHHHH--H-HHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC------C--CHHHHHHHHHH
Q 017743 238 YCDNVSRAREI--F-DELSKLGK-DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT------P--DSSTYKLLYKA 305 (366)
Q Consensus 238 ~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------p--~~~~~~~l~~~ 305 (366)
..|..+.+.+. + ........ ............++...|+.++|..++..+...... . .........-+
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 34433222222 1 11111101 111222235667778899999999999988653211 0 11222223334
Q ss_pred HHhhchHHHHHHHHHHHHhC
Q 017743 306 YTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~ 325 (366)
+...|++++|.+.+......
T Consensus 317 ~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 317 AFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 56889999999998887754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-08 Score=83.29 Aligned_cols=223 Identities=15% Similarity=0.099 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-PDIITFNLLIDS 165 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 165 (366)
.....+.+++...|+.+.+. .++.... .|.......+...+...++-+.+..-+++....... .+..........
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 34445556666666655432 2332222 445444444444443333444444444433322222 122222233344
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh----ccCc
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG----YCDN 241 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 241 (366)
+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++. ..+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 55667777776665432 345555666666777777777777777776542 22 22233333322 2235
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchH-HHHHHHHH
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK-ELVQKLLK 320 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~ 320 (366)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. ++.+...++-.....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 66777777776554 3456666677777777777777777777776655432 556666666666666666 55556666
Q ss_pred HHHh
Q 017743 321 RMEQ 324 (366)
Q Consensus 321 ~m~~ 324 (366)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 6655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-07 Score=76.05 Aligned_cols=310 Identities=11% Similarity=0.019 Sum_probs=205.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHh
Q 017743 21 MGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQ 98 (366)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 98 (366)
.+-.++...|..++-.+.....-| +......+-..+. ..|+..+|+..|++.... .|. ........-.+.+
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~ 278 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----YNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQ 278 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----hhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHh
Confidence 334455555665555554433334 4445566666666 445588888888887642 232 2223333344567
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 017743 99 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 178 (366)
.|+.+....+...+.... ..+...|..-...+....+++.|+.+-++..+... .+...+-.-...+...|+.++|.-.
T Consensus 279 eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred ccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHH
Confidence 788888888777776542 23444455555556667888888888888876642 2455555556677888999999988
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHH-HHhh-ccCcHHHHHHHHHHHHhCC
Q 017743 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYG-YCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~ 256 (366)
|+..... -+.+..+|.-++.+|...|.+.+|.-.-....+. ++.+..+.+.+. ..+. ...--++|.++++...+.+
T Consensus 357 FR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 357 FRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 8888764 2347788999999999999999888777665543 134455555552 2222 2233477888888877764
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHH
Q 017743 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336 (366)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 336 (366)
+. -....+.+...+...|..+.++.++++... ..||....+.|.+.+...+.+.+|++.|..... +.|...--..
T Consensus 435 P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~ 509 (564)
T KOG1174|consen 435 PI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLR 509 (564)
T ss_pred Cc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHH
Confidence 43 345667788888889999999999988776 368888899999999999999999999888877 4455544333
Q ss_pred HHHHhhcccc
Q 017743 337 ALETFSSSLA 346 (366)
Q Consensus 337 ll~~~~~~~~ 346 (366)
=++-+-++-.
T Consensus 510 Gl~~lEK~~~ 519 (564)
T KOG1174|consen 510 GLRLLEKSDD 519 (564)
T ss_pred HHHHHHhccC
Confidence 3444444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-06 Score=74.35 Aligned_cols=305 Identities=10% Similarity=0.106 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchH------------------HHHHHHHHHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD------------------KAKALAKALGYF 73 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~------------------~~~~~~~a~~~~ 73 (366)
..|++|.+.|.+.|.+++|.++|++.... .....-+..+...|+.-.. ...+++-.+..|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 46899999999999999999999998765 3455666777776652211 001122223333
Q ss_pred HHHhcCCC----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------hhhHHHHHHHHHhcCCH
Q 017743 74 QKMKGMER----------CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD------IYTYNGVMDAYGKNGMI 137 (366)
Q Consensus 74 ~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~ 137 (366)
+.+..... -+.++..|..-... ..|+..+....|.++.+. +.|. ...|..+.+.|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 33332111 12233333333322 346677777888887764 2222 23477888889999999
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-----------C------CCHHHHHHH
Q 017743 138 KEMESVLSRMKSNQCKPD---IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-----------K------PTLPTFNSM 197 (366)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~------~~~~~~~~l 197 (366)
+.|..+|++..+...+-- ..+|.....+-.++.+++.|+++.+.....-- + -+...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999999987654322 45666677777888999999999887654211 1 123456666
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK-VSTLNAMLEAYCM--- 273 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~--- 273 (366)
+..--..|-++....+++++.+..+. ++...-.....+....-++++.+++++-...=.-|+ ...|+..+.-+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 66666778899999999999987643 333333333334456668899999987666533333 4567777776665
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH--HHhhchHHHHHHHHHHHH
Q 017743 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKA--YTKANMKELVQKLLKRME 323 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~ 323 (366)
...++.|..+|++..+ |++|...-+-.|+-+ =-+.|....|+.++++..
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3478999999999998 666654332222222 234577777777777643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-08 Score=81.40 Aligned_cols=252 Identities=11% Similarity=0.058 Sum_probs=162.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 017743 18 IAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 97 (366)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (366)
++.+.-.|++..++.-.+ ........+......+.+++...| +.+. .+.++.+. -.|.......+...+.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg----~~~~---vl~ei~~~--~~~~l~av~~la~y~~ 77 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALG----QYDS---VLSEIKKS--SSPELQAVRLLAEYLS 77 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-----HHH---HHHHS-TT--SSCCCHHHHHHHHHHC
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcC----ChhH---HHHHhccC--CChhHHHHHHHHHHHh
Confidence 344556788888886665 222211112333444555555333 2433 34455432 2666666666665555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 017743 98 QARNVDQVNALFKELHESILAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176 (366)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 176 (366)
..++-+.+..-+++.......+ +..........+...|++++|++++... .+.......+..|.+.++++.|.
T Consensus 78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~ 151 (290)
T PF04733_consen 78 SPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAE 151 (290)
T ss_dssp TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHH
Confidence 4455556655555444333222 2222233335566789999999988753 36777788899999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHH----hcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 017743 177 QVFKSLMHSKEKPTLPTFNSMIINYG----KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (366)
+.++.|.+. ..|.. ...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+.
T Consensus 152 k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 152 KELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999874 34433 333444443 234689999999998765 4678899999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHhhhC
Q 017743 253 SKLGKDMKVSTLNAMLEAYCMNGLP-TEADLLFENSHNM 290 (366)
Q Consensus 253 ~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~ 290 (366)
...+.. ++.+...++.+....|+. +.+.+++.++...
T Consensus 228 l~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 228 LEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 877655 778888888888888888 6678899888874
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-06 Score=69.39 Aligned_cols=272 Identities=8% Similarity=-0.018 Sum_probs=174.5
Q ss_pred cccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017743 6 WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (366)
.++.|......+.+.+...|+.++|+..|++.... .|+..+-.- .|+......|..++...+...+.... +.+
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD---~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~t 299 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMD---LYAVLLGQEGGCEQDSALMDYLFAKV--KYT 299 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHH---HHHHHHHhccCHhhHHHHHHHHHhhh--hcc
Confidence 34556777778888888888888888888877653 343332111 11111123444555555555554311 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (366)
...|-.-+......+++..|..+-++.++.. +-+...+-.-...+...++.++|.--|+...... +-+...|..++.+
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 4445555555556777888888877777653 2234444444566777888888888887776542 3467788888888
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHH-HHHH-hcCcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCcH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI-INYG-KARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNV 242 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 242 (366)
|...|++.+|.-+-+..... .+.+..+.+.+. ..|. ....-++|..+++..... .|+ ....+.+...+...|..
T Consensus 378 YLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~ 454 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPT 454 (564)
T ss_pred HHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCcc
Confidence 88888888887776665554 344555555442 2222 233456777777776654 344 45667777777788888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
..+..+++..... .||....+.|.+.+...+.+++|++.|......+
T Consensus 455 ~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 455 KDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred chHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 8888888877664 4577778888888888888888888888777654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-06 Score=70.04 Aligned_cols=312 Identities=11% Similarity=0.080 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH-HHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI-VTYN 90 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 90 (366)
..|-...+.=...+++..|..+|+..+.-. ..+...|...+..=. ++..+..|..+++..... -|.+ ..|-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Em----knk~vNhARNv~dRAvt~---lPRVdqlWy 145 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEM----KNKQVNHARNVWDRAVTI---LPRVDQLWY 145 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHH----hhhhHhHHHHHHHHHHHh---cchHHHHHH
Confidence 334444444455677888999999988643 223334444444333 666688888888887642 3333 3455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (366)
..+..=-..|++..|.++|++..+. .|+..+|.+.++.=.+-+.++.|..+++...-. .|++.+|-.....-.++|
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcC
Confidence 5555556678999999999988875 789999999999988999999999999988764 588888888888888899
Q ss_pred ChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHhhccCcHHHHH
Q 017743 171 AFDKMEQVFKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGYCDNVSRAR 246 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~ 246 (366)
....|..+|....+.-.. .+...+.+....-.++..++.|.-+|+-.++.- +.+ ...|..+...--+-|+.....
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhH
Confidence 999999998887764111 122344444444445667778888887776652 222 334444443333344433322
Q ss_pred HH--------HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH-------HHHHHHHHH---Hh
Q 017743 247 EI--------FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS-------TYKLLYKAY---TK 308 (366)
Q Consensus 247 ~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-------~~~~l~~~~---~~ 308 (366)
.. ++.+.+.++ .|..+|-..+..-...|+.+...++|++.+.. ++|-.. .|--+=-+| ..
T Consensus 301 d~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 233444433 26667777777777777777777777777654 333211 111111111 33
Q ss_pred hchHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 017743 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339 (366)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 339 (366)
..+.+.+.++|+..++ =|+....||..+.-
T Consensus 379 ~ed~ertr~vyq~~l~-lIPHkkFtFaKiWl 408 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLD-LIPHKKFTFAKIWL 408 (677)
T ss_pred hhhHHHHHHHHHHHHh-hcCcccchHHHHHH
Confidence 5666667777766666 23333445544433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-06 Score=74.92 Aligned_cols=266 Identities=10% Similarity=0.020 Sum_probs=166.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 017743 18 IAVMGKKGQTRLAMWLFSEMRNSGCRPDPS-VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96 (366)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (366)
...+...|++++|.+.++...+. .|+.. .+.. ...+...+...+....+.+.+.... ...+........+...+
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHH
Confidence 44567789999999999998875 34433 3332 1122222223344555566555422 11233344556677788
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCChh
Q 017743 97 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC-KPDI--ITFNLLIDSYGKRQAFD 173 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~ 173 (366)
...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+++...... .|+. ..|..+...+...|+++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 125 EEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999875 34566788888999999999999999999877532 1232 34557888899999999
Q ss_pred HHHHHHHHHHhcCC-CCCHHHH-H--HHHHHHHhcCcHhHHHHH--HHHHHhCCC--CCCHHHHHHHHHHhhccCcHHHH
Q 017743 174 KMEQVFKSLMHSKE-KPTLPTF-N--SMIINYGKARLQGKAEYV--FQKMTAMKY--TPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 174 ~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
+|..++++...... .+..... + .++.-+...|....+.++ +........ ............++...|+.+.|
T Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a 283 (355)
T cd05804 204 AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDAL 283 (355)
T ss_pred HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHH
Confidence 99999999864332 1222211 1 223333344443333333 211111110 11122223567777889999999
Q ss_pred HHHHHHHHhCCCC------C--CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 246 REIFDELSKLGKD------M--KVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 246 ~~~~~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
..+++.+...... . .....-...-++...|+.++|.+.+.....
T Consensus 284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999988763221 0 112222233345678999999999887764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.7e-08 Score=84.74 Aligned_cols=243 Identities=12% Similarity=0.060 Sum_probs=192.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
+|-...-..+...+...|-...|..+++++.. |..++.+|...|+..+|..+..+..++ +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 34444456677888899999999999988753 456788999999999999999988874 7899999999
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (366)
.+......-+++|.++++..... .-..+.....+.+++.++.+.|+.-.+.+ +....+|-.+.-+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99888888889999998876332 22222233345789999999999887765 55677888888888999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
+.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+. -+-..|...+-...+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999999887655 788999999999999999999999999998884 46677777778889999999999999988
Q ss_pred HhCC-CCCChhHHHHHHHHhhcccc
Q 017743 323 EQNG-IVPNKRFFLEALETFSSSLA 346 (366)
Q Consensus 323 ~~~g-~~~~~~~~~~ll~~~~~~~~ 346 (366)
.+.. ...|..+...++....+...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~~~~~~ 638 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTVLEGMT 638 (777)
T ss_pred HHhhhhcccchhhHHHHHHHHhhcc
Confidence 7531 12266666666666655544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.7e-07 Score=84.06 Aligned_cols=229 Identities=9% Similarity=0.074 Sum_probs=178.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAP-----DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 157 (366)
|.+...|-..|....+.++.+.|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+. -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 444567888888999999999999999998864 211 2356777777777778888899999998876 22356
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS---FITYECIIT 234 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 234 (366)
+|..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.++.+-+.|..++.+..+. -|. .......+.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 7888899999999999999999999886 3457788999999999999999999999888765 233 345566667
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHhhchH
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS--STYKLLYKAYTKANMK 312 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~ 312 (366)
.-.+.|+.+.+..+|+......++ -...|+.+|..-.++|+.+.+..+|++....++.|-. ..|...+..=...|+-
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 777889999999999998887655 6788999999999999999999999999988877643 4556666555556665
Q ss_pred HHHHHH
Q 017743 313 ELVQKL 318 (366)
Q Consensus 313 ~~a~~~ 318 (366)
+.+..+
T Consensus 1688 ~~vE~V 1693 (1710)
T KOG1070|consen 1688 KNVEYV 1693 (1710)
T ss_pred hhHHHH
Confidence 544433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.1e-10 Score=58.77 Aligned_cols=34 Identities=35% Similarity=0.386 Sum_probs=31.4
Q ss_pred ccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 017743 5 RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMR 38 (366)
Q Consensus 5 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 38 (366)
+|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5889999999999999999999999999999884
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-05 Score=70.32 Aligned_cols=311 Identities=12% Similarity=0.051 Sum_probs=203.9
Q ss_pred CHHHHHHHHHHHHh-cCChhHHHHHHHHHHhc--CC--CCChhhHHHHHHHHhhch-------HHHHHHHHHHHHHHHHh
Q 017743 10 DTGIYSKLIAVMGK-KGQTRLAMWLFSEMRNS--GC--RPDPSVYNALITAHLHTR-------DKAKALAKALGYFQKMK 77 (366)
Q Consensus 10 ~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~--g~--~p~~~~~~~ll~~~~~~~-------~~~~~~~~a~~~~~~~~ 77 (366)
|+..+-..-..|.+ .+.++++++.-.+.... |. ......|..+--+|.... .+.....++++.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 44555544455554 36666666666665541 11 112333333333332111 13344678888888887
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC----
Q 017743 78 GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QC---- 152 (366)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~---- 152 (366)
+.++-.|+...|-++ -|+..++++.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+...+. |.
T Consensus 472 ~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred hcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 766556655555444 46777899999999999999866778899999999999999999999998876543 11
Q ss_pred --------------CCCHHHHHHHHHHHhc-----------------------cCChhHHHHHHHHHH--------hcC-
Q 017743 153 --------------KPDIITFNLLIDSYGK-----------------------RQAFDKMEQVFKSLM--------HSK- 186 (366)
Q Consensus 153 --------------~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~--------~~~- 186 (366)
.....|+..++..+-. .++..++.+....+. ..+
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 0011222222222210 011111111111110 000
Q ss_pred ----------CCCC------HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 017743 187 ----------EKPT------LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250 (366)
Q Consensus 187 ----------~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (366)
..|+ ...|......+.+.+..++|...+.+..... +.....|......+...|.+.+|.+.|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0111 1234455566677777788877777766553 4456677777778888999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH--HHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL--LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.....++. ++.+..++..++.+.|+..-|.. ++..+.+.+. .+...|..+...+.+.|+.++|-+.|....+-
T Consensus 709 ~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 709 VALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99887665 68889999999999999888887 9999999874 48999999999999999999999999887653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.9e-07 Score=69.45 Aligned_cols=293 Identities=13% Similarity=0.110 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
..-+.+.+..+.+..++++|++++..-.++ .| +....+.+-.+|. ....+..|-..++++... .|...-|
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY----~~Q~f~~AA~CYeQL~ql---~P~~~qY 80 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYY----RLQEFALAAECYEQLGQL---HPELEQY 80 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh---ChHHHHH
Confidence 344677788888999999999999988776 45 4444455544554 445588999999988652 5665555
Q ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 90 NI-LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM--DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 90 ~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
.. -...+.+.+.+..|.++...|.+. |+...-..-+ ......+++..+..++++....| +..+.+...-..
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCll 154 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhee
Confidence 43 356677788888898888777642 2221111112 22234566666776766665322 333444444445
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC-------------CH-------
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP-------------SF------- 226 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~------- 226 (366)
.+.|+++.|.+-|+...+-+.......|+..+- ..+.++++.|.+...+++++|++. |.
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 667777777777777766544445556665443 345677777777777776664321 11
Q ss_pred -HHHHHHHHH-------hhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 017743 227 -ITYECIITM-------YGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297 (366)
Q Consensus 227 -~~~~~l~~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 297 (366)
..-+.++.+ +.+.++++.|.+.+-.|... ....|+.|...+.-.- -.+++.+..+-+.-+.+.++ -...
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChH
Confidence 111233333 23556677776666666432 2233455544332221 13444444444444444443 2356
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHH
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
||..++-.|++..-++.|-.++.+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 777777777777777666655543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-05 Score=69.03 Aligned_cols=315 Identities=10% Similarity=0.106 Sum_probs=184.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCC
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG------CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g------~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 82 (366)
.++..-+-.|..+++.+++++|.+.+...+... .+.+...|.-+....++..++... -....+++.+.. .
T Consensus 167 ~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~s-lnvdaiiR~gi~---r 242 (835)
T KOG2047|consen 167 VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQS-LNVDAIIRGGIR---R 242 (835)
T ss_pred cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcc-cCHHHHHHhhcc---c
Confidence 344556667888889999999999988876431 133445566666666554432211 122334444432 1
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---------------------------
Q 017743 83 KPNI--VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK--------------------------- 133 (366)
Q Consensus 83 ~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--------------------------- 133 (366)
-+|. ..|++|.+.|.+.|.++.|..+|++....- .+..-|..+..+|++
T Consensus 243 ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 243 FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 3443 468999999999999999999998877542 223333333333321
Q ss_pred ---------------------------------------cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHhc
Q 017743 134 ---------------------------------------NGMIKEMESVLSRMKSNQCKP------DIITFNLLIDSYGK 168 (366)
Q Consensus 134 ---------------------------------------~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~ 168 (366)
.|+..+...++.+..+. +.| -...|..+...|-.
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHh
Confidence 11222222333333221 111 12345566677777
Q ss_pred cCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC-----------C------CHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPT---LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-----------P------SFIT 228 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~ 228 (366)
.|+.+.|..+|++..+...+.- ..+|..-...-.+..+++.|.++++......-. + +...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 7888888888887766432211 234555555555667777777777665432111 1 1223
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHH
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS-STYKLLYKAYT 307 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 307 (366)
|...+..--..|-++....+++.+.+..+. ++...-.....+-.+..++++.+++++-+..=..|+. ..|+..+..+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 445555555667777788888888777654 4444444444455666778888888876654223443 45666666655
Q ss_pred hh---chHHHHHHHHHHHHhCCCCCChh
Q 017743 308 KA---NMKELVQKLLKRMEQNGIVPNKR 332 (366)
Q Consensus 308 ~~---~~~~~a~~~~~~m~~~g~~~~~~ 332 (366)
+. -+.+.|..+|++.++ |.+|...
T Consensus 559 ~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 42 368899999999998 7776553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-05 Score=64.62 Aligned_cols=292 Identities=12% Similarity=0.032 Sum_probs=202.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH---HhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH-HH
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY-NI 91 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ 91 (366)
-+-..+..+|++.+|+.-|...++ .|+..|.++.+- |. ..|.-.-|+.-+....+ .+||...- .-
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yL----AmGksk~al~Dl~rVle---lKpDF~~ARiQ 111 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYL----AMGKSKAALQDLSRVLE---LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHh----hhcCCccchhhHHHHHh---cCccHHHHHHH
Confidence 355667778889999988888875 466666665542 22 22334455555666554 26765432 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----h------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIY----T------------YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 155 (366)
-...+.+.|.++.|..=|+..++.. |+.. . ....+..+.-.|+...|+.....+.+.. +.|
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wd 188 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWD 188 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cch
Confidence 2355778999999999999988764 2211 1 1233445666889999999999998874 458
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHH----HHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT----YEC 231 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ 231 (366)
...+..-..+|...|++..|+.=++...+. ...+..++..+-..+...|+.+.++...++..+. .||... |-.
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKK 265 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHH
Confidence 888888889999999999998888777665 3446667777788888999999999988888876 455422 211
Q ss_pred ---HH------HHhhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH
Q 017743 232 ---II------TMYGYCDNVSRAREIFDELSKLGKDMK---VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299 (366)
Q Consensus 232 ---l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 299 (366)
+. ......++|.++..-.+...+..+... ...+..+-.++...|++.+|+....+..+.. +.|..++
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l 344 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHH
Confidence 11 122345677777777777777654422 2334556667778899999999999988754 2248888
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 300 KLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.--..+|.-...++.|+.=|+...+.
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88888998888999998888887763
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-07 Score=78.48 Aligned_cols=222 Identities=10% Similarity=0.046 Sum_probs=170.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 017743 95 ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174 (366)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (366)
-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+.... |....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3567899999999999988875 447788999999999999999999999999887533 67788888888999999999
Q ss_pred HHHHHHHHHhcCCCC--------CHHHHHHHHHHHHhcCcHhHHHHHHHHH-HhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 175 MEQVFKSLMHSKEKP--------TLPTFNSMIINYGKARLQGKAEYVFQKM-TAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 175 a~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
|.+.++.-+...++- +...-.. ..+.....+....++|-++ ...+..+|+.+...|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998886543210 0000000 0111122233444444444 4455457888888888889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
...|+.+....+. |...||.|...++...+.++|+..|++.++. +|+ +.+...|.-+|...|.+++|.+.|-..+
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999998766 8999999999999999999999999999985 565 4566778889999999999999887654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-05 Score=65.58 Aligned_cols=220 Identities=5% Similarity=-0.106 Sum_probs=126.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh--h
Q 017743 97 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF--D 173 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 173 (366)
...++.++|+.+..++++.. +-+..+|+..-.++...| ++++++..++++.+...+ +..+|+.....+.+.|+. +
T Consensus 48 ~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 34456667777777766653 123344555445555555 467777777777665433 444555444444444442 5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc---Cc----HHHHH
Q 017743 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DN----VSRAR 246 (366)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~ 246 (366)
++..+++++++.. +-+..+|+.....+...|+++++++.+.++++.+ +-+...|+.....+.+. |. .++..
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 5666666666643 2356667766666667777777777777777665 33445555444444333 22 23455
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc------------
Q 017743 247 EIFDELSKLGKDMKVSTLNAMLEAYCMN----GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN------------ 310 (366)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------------ 310 (366)
.....+....+. |...|+.+...+... ++..+|.+.+.+....++ .+......|++.|....
T Consensus 204 ~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 204 KYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 555566655544 666777666666652 334557777776665442 25666677777776532
Q ss_pred ------hHHHHHHHHHHH
Q 017743 311 ------MKELVQKLLKRM 322 (366)
Q Consensus 311 ------~~~~a~~~~~~m 322 (366)
..+.|.+++..+
T Consensus 282 ~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 282 LAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cccccccHHHHHHHHHHH
Confidence 235677777777
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.8e-06 Score=76.92 Aligned_cols=269 Identities=13% Similarity=0.076 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
+...+..|+..+...+++++|.++.+...+. .|+...+-.+...+.. ..+...++. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~---q~~~~~~~~------------------l 86 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSL---SRRPLNDSN------------------L 86 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHH---hhcchhhhh------------------h
Confidence 4667888999999999999999999977664 5655544333332211 111111111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 017743 90 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (366)
..++.......++..+..++..+... .-+...+..+..+|-+.|+.+++..+++++.+.. +-|+.+.|.+...|...
T Consensus 87 v~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 87 LNLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 14555555566665555556666654 3355678888889999999999999999998887 44788888998888888
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 017743 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249 (366)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 249 (366)
+.++|.+++.+.... +...+++..+..+|.++.... |+. .+.-.++.
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~i~ 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLRIE 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHHHH
Confidence 999998888877553 556668888888888888763 221 11222222
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH-hCCC
Q 017743 250 DELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME-QNGI 327 (366)
Q Consensus 250 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~g~ 327 (366)
+.+... +..--..++..+...|-..++++++..+++.+.+.... |.....-++.+|. +.+.. ...|++.. -.|+
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l 286 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK--EKYKD-HSLLEDYLKMSDI 286 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH--HHccC-cchHHHHHHHhcc
Confidence 222222 12223455666777777788888888888888876533 6666677777665 33333 33333332 3355
Q ss_pred CCChhHHHHHHHHh
Q 017743 328 VPNKRFFLEALETF 341 (366)
Q Consensus 328 ~~~~~~~~~ll~~~ 341 (366)
.-+...+...|.-|
T Consensus 287 ~~~~~~~~~~i~~f 300 (906)
T PRK14720 287 GNNRKPVKDCIADF 300 (906)
T ss_pred ccCCccHHHHHHHH
Confidence 55545555444444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.3e-05 Score=66.52 Aligned_cols=167 Identities=10% Similarity=0.065 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
+.+.|..+.-.+....++++|+..|......+ +-|...|.-+--.-++.++ ++-.......+.+. .+.....|
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd----~~~~~~tr~~LLql--~~~~ra~w 146 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRD----YEGYLETRNQLLQL--RPSQRASW 146 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHh--hhhhHHHH
Confidence 34456666666666777888888888777653 1133344333222232222 33333333333321 12344567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 90 NILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVM------DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
..++.++.-.|+...|..++++..+.. ..|+...+.... ....+.|..++|.+.+..-... +......-..-
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~k 225 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETK 225 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhH
Confidence 777777777888888888888777654 235554443322 2233455555555554443322 11112222233
Q ss_pred HHHHhccCChhHHHHHHHHHHh
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
...+.+.+++++|..++..++.
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHh
Confidence 4445556666666666666655
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-05 Score=63.70 Aligned_cols=96 Identities=17% Similarity=0.087 Sum_probs=59.2
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhh
Q 017743 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTL-NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS-TYKLLYKAYTKA 309 (366)
Q Consensus 232 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~ 309 (366)
+.++.+..|.+.+|+++|-.+....++ |..+| ..|..+|.+++.++.|+.++-++... .+.. ....+..-|-+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHH
Confidence 455566667777777777766655555 44444 34556777788888777776555332 1222 334445567777
Q ss_pred chHHHHHHHHHHHHhCCCCCChhH
Q 017743 310 NMKELVQKLLKRMEQNGIVPNKRF 333 (366)
Q Consensus 310 ~~~~~a~~~~~~m~~~g~~~~~~~ 333 (366)
+.+--|-+.|+.+... .|++..
T Consensus 475 ~eFyyaaKAFd~lE~l--DP~pEn 496 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEIL--DPTPEN 496 (557)
T ss_pred HHHHHHHHhhhHHHcc--CCCccc
Confidence 7777777788777763 344433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-05 Score=65.98 Aligned_cols=41 Identities=7% Similarity=0.125 Sum_probs=29.9
Q ss_pred HHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccc
Q 017743 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345 (366)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 345 (366)
..-.+.|+-++|..+++++.+.. ++|..+...++-+++..-
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 33456788889999999988743 367777888888777653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-06 Score=66.37 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=59.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh-hccCc--HHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY-GYCDN--VSRA 245 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 245 (366)
.++.+++...++..+.. -+.+...|..+...|...|+++.|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 34444454445444443 22345555555555555555555555555555543 22344444444432 33344 3555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
.+++++..+.++. +...+..+...+...|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555555443 4455555555555555555555555555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-06 Score=74.78 Aligned_cols=248 Identities=13% Similarity=0.104 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
+.|.+.+|.-.|+...... |-+...|..|.......++-..|+..+++.++.. +-|....-.|.-.|...|.-.+|.
T Consensus 297 ~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred hcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 4556888888888877543 5678899999999999999999999999999875 336777888888899999999999
Q ss_pred HHHHHHHHCCCCC--------CHHHHHHHHHHHhccCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCcHhHHHH
Q 017743 142 SVLSRMKSNQCKP--------DIITFNLLIDSYGKRQAFDKMEQVFKSLMH-SKEKPTLPTFNSMIINYGKARLQGKAEY 212 (366)
Q Consensus 142 ~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~ 212 (366)
+.++.-.....+- +...-.. ..+.....+....++|-++.. .+..+|+.....|.-.|.-.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9999876542110 0000000 112222233445555555543 3434778888888888899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC--
Q 017743 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM-- 290 (366)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-- 290 (366)
.|+..+... +-|...||.|.-.++...+..+|+..|.+.++..+.. +.+.-.|.-.|...|.+++|.+.|-..+..
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 999999875 5567899999999999999999999999999976553 344455777899999999999888765432
Q ss_pred -------CCCCCHHHHHHHHHHHHhhchHHHHH
Q 017743 291 -------GVTPDSSTYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 291 -------~~~p~~~~~~~l~~~~~~~~~~~~a~ 316 (366)
+..++...|..|=.++.-.++.|.+.
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 12234467777766777677666444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.8e-09 Score=54.73 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 291 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-05 Score=76.05 Aligned_cols=233 Identities=12% Similarity=0.113 Sum_probs=176.0
Q ss_pred CCC-hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 017743 43 RPD-PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP---NIVTYNILLRACAQARNVDQVNALFKELHESILA 118 (366)
Q Consensus 43 ~p~-~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 118 (366)
.|+ ...|-..|.... ..+..++|.+++++....-.+.- -.-.|.++++.-...|.-+...++|+++.+.-
T Consensus 1454 sPNSSi~WI~YMaf~L----elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHL----ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-- 1527 (1710)
T ss_pred CCCcchHHHHHHHHHh----hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--
Confidence 454 456777777777 44559999999988874322211 12357777777777888899999999998752
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-CHHHHHHH
Q 017743 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP-TLPTFNSM 197 (366)
Q Consensus 119 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 197 (366)
-.-..|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+.++.-+.- -.......
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKF 1606 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence 23456888999999999999999999999886 33578899999999999999999999999998852221 23344555
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcC
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNG 275 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 275 (366)
+..-.+.|+.+++..+|+...... +--...|+..++.-.+.|+.+.++.+|+++...++.|. ...|...+..--..|
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 666678899999999999988763 44567899999999999999999999999999877653 234555555555556
Q ss_pred ChhHHHHH
Q 017743 276 LPTEADLL 283 (366)
Q Consensus 276 ~~~~a~~~ 283 (366)
+-+.++.+
T Consensus 1686 de~~vE~V 1693 (1710)
T KOG1070|consen 1686 DEKNVEYV 1693 (1710)
T ss_pred chhhHHHH
Confidence 65444433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-06 Score=68.93 Aligned_cols=187 Identities=14% Similarity=0.016 Sum_probs=123.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCH--HHH
Q 017743 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-P-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL--PTF 194 (366)
Q Consensus 119 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 194 (366)
.....+..+...+.+.|++++|...++++...... | ....+..+..++...|++++|...++++.+..+.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777778888889999999999888775321 1 1245677788888889999999999988775332121 134
Q ss_pred HHHHHHHHhc--------CcHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 017743 195 NSMIINYGKA--------RLQGKAEYVFQKMTAMKYTPSF-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265 (366)
Q Consensus 195 ~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 265 (366)
..+..++... |+++.|.+.++.+.... |+. ..+..+..... ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 4445555543 66777888888777653 332 22222211100 000 00 01122
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 266 AMLEAYCMNGLPTEADLLFENSHNMGV--TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678899999999999999887532 123578889999999999999999998888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-06 Score=68.81 Aligned_cols=188 Identities=13% Similarity=-0.016 Sum_probs=126.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI---YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI--I 157 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 157 (366)
......+..+...+...|+++.|...++++.... +.+. .++..+..++.+.|++++|...++++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677888888999999999999999988753 1122 46677888899999999999999999876432111 2
Q ss_pred HHHHHHHHHhcc--------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHH
Q 017743 158 TFNLLIDSYGKR--------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 158 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
++..+..++... |+++.|.+.|+.+....+. +...+..+..... ... .. ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 344455555543 7889999999999875322 2222222211110 000 00 0111
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSKLGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
..+...+.+.|++++|...++...+..+. .....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 24556678889999999999888876332 23577888899999999999999988887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6e-06 Score=64.95 Aligned_cols=263 Identities=13% Similarity=0.055 Sum_probs=179.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
+......+...|-...++..|-+.|+++-.. .|...-|... ++++..+.+.+.+|+.+...|.. .|+...-
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY---~AQSLY~A~i~ADALrV~~~~~D----~~~L~~~ 113 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY---QAQSLYKACIYADALRVAFLLLD----NPALHSR 113 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH---HHHHHHHhcccHHHHHHHHHhcC----CHHHHHH
Confidence 5566777888888999999999999999765 5655555432 22333366678999999988874 3443322
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 017743 90 NILLRA--CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167 (366)
Q Consensus 90 ~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (366)
..-+.+ ....+++..+..++++....| +..+.+.......+.|+++.|.+-|+...+.+--.....|+..+ +..
T Consensus 114 ~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy 189 (459)
T KOG4340|consen 114 VLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHY 189 (459)
T ss_pred HHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHH
Confidence 222222 335778888888888766433 56666777777789999999999999988765443566676555 455
Q ss_pred ccCChhHHHHHHHHHHhcCCC-------------CCHH--------HHHHHHHH-------HHhcCcHhHHHHHHHHHHh
Q 017743 168 KRQAFDKMEQVFKSLMHSKEK-------------PTLP--------TFNSMIIN-------YGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~li~~-------~~~~~~~~~a~~~~~~~~~ 219 (366)
+.|+++.|++...++++.|+. ||+. .-+.++.+ +.+.++++.|.+.+-.|.-
T Consensus 190 ~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 190 SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 678999999999999887753 2221 12233333 4567888888888877763
Q ss_pred C-CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 220 M-KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 220 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
+ ....|+.|...+.-.-. .+++.+..+-+..+...++- ...||..++-.||++.-++.|-.++.+-
T Consensus 270 RaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 270 RAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred cccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 3 23456677665543322 45566666667777777664 4788888999999999999888887653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-05 Score=65.55 Aligned_cols=167 Identities=7% Similarity=0.016 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHH
Q 017743 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI--KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 179 (366)
+++++..++++.+... -+..+|+.....+.+.|.. ++++.+++++.+...+ |..+|+....++...|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4455555555444321 1333343333333333331 3444555455444322 4455555555555555555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc---Cc----HhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc----CcHHHHHHH
Q 017743 180 KSLMHSKEKPTLPTFNSMIINYGKA---RL----QGKAEYVFQKMTAMKYTPSFITYECIITMYGYC----DNVSRAREI 248 (366)
Q Consensus 180 ~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~ 248 (366)
+++++.++. +...|+.....+.+. |. .++......+.+... +-+...|+.+...+... ++..+|...
T Consensus 166 ~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 555554322 333444333333222 11 123444444444432 33445555555555442 233445555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh
Q 017743 249 FDELSKLGKDMKVSTLNAMLEAYCM 273 (366)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~li~~~~~ 273 (366)
+.+..+.++. +......|+..|+.
T Consensus 244 ~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 244 CLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHhhcccCC-cHHHHHHHHHHHHh
Confidence 5555554333 45556666666654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.6e-06 Score=64.41 Aligned_cols=157 Identities=8% Similarity=-0.033 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 017743 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204 (366)
Q Consensus 125 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 204 (366)
..+-..+...|+-+....+........ +.+.......+....+.|++..|...+++.... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 344444555555555555544433221 223344444555555555555555555555443 334555555555555555
Q ss_pred CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 017743 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 284 (366)
|+++.|..-|.+..+.. .-++..++.+.-.+.-.|+++.|..++......+.. |..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555555555555442 223344455555555555555555555555544322 4444455555555555555555544
Q ss_pred H
Q 017743 285 E 285 (366)
Q Consensus 285 ~ 285 (366)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.3e-06 Score=63.89 Aligned_cols=118 Identities=10% Similarity=0.099 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCc--HhHHH
Q 017743 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-GKARL--QGKAE 211 (366)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~ 211 (366)
++.+++...++...+.. +.+...|..+...|...|+++.|...|++..... +.+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34444444444444432 2244455555555555555555555555554432 12344444444432 33343 25555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
+++++..+.+ +.+...+..+...+...|++++|...|+.+.+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555443 223444445555555555555555555555444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8e-05 Score=63.47 Aligned_cols=312 Identities=14% Similarity=0.066 Sum_probs=187.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHH
Q 017743 19 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACA 97 (366)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 97 (366)
.+.+..|+++.|+.+|.+.+... +++...|+.-..+++ ..+++++|++--.+..+ +.|+ ...|+....++.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a----~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYA----SLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALF 81 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHH----HHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHH
Confidence 45677899999999999988764 336777888888887 44557777766666554 2555 457888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-------------------------------------------
Q 017743 98 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN------------------------------------------- 134 (366)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------------------------------------------- 134 (366)
-.|++++|..-|.+-++.. +.|...++.+..++...
T Consensus 82 ~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred hcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 8899999988887766542 22333333333322100
Q ss_pred --------CCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHhccCCh
Q 017743 135 --------GMIKEMESVLSRM-----KSNQ-------CKP------------D----------IITFNLLIDSYGKRQAF 172 (366)
Q Consensus 135 --------~~~~~a~~~~~~~-----~~~~-------~~~------------~----------~~~~~~l~~~~~~~~~~ 172 (366)
.++..+.-.+... ...+ ..| + ..-...+..+..+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 0000010000000 0000 001 0 00123344444444555
Q ss_pred hHHHHHHHHHHhc---------------------------------CCCCCHHHHH-------HHHHHHHhcCcHhHHHH
Q 017743 173 DKMEQVFKSLMHS---------------------------------KEKPTLPTFN-------SMIINYGKARLQGKAEY 212 (366)
Q Consensus 173 ~~a~~~~~~~~~~---------------------------------~~~~~~~~~~-------~li~~~~~~~~~~~a~~ 212 (366)
+.|.+.+...++. |.. ...-|+ .+..+|.+.++++.+..
T Consensus 241 ~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 241 ETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 5554444443332 111 011122 22335556677888888
Q ss_pred HHHHHHhCCCCCCHHHH-------------------------HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 213 VFQKMTAMKYTPSFITY-------------------------ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267 (366)
Q Consensus 213 ~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (366)
.|.+.......|+...- ..-...+.+.|++..|...|.++++..+. |...|..-
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNR 398 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNR 398 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHH
Confidence 88776655444443221 11234556778899999999998888755 88889989
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 017743 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 344 (366)
.-+|.+.|.+..|++-.+...+.+ ++....|..=..++....+++.|.+.|++-++.. |+..-+..-++-|...
T Consensus 399 Aac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHH
Confidence 999999999999988888877764 3345556555666677788999999999988854 7776666666666554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-06 Score=76.54 Aligned_cols=223 Identities=10% Similarity=0.071 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
..|-...|+.+|+++. .|.-.|.+|...|+.++|..+..+..+. +||...|..+.+......-+++|.
T Consensus 410 slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkaw 477 (777)
T KOG1128|consen 410 SLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAW 477 (777)
T ss_pred HcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHH
Confidence 4455788888888765 3677888999999999999998888773 688889999888888887888898
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.+++..|.+.|.......
T Consensus 478 Elsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 478 ELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 888875432 12222233345789999999999877652 3356788888888889999999999999888753
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHH
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-VTPDSSTYK 300 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~ 300 (366)
+-+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++.... -.-|..+..
T Consensus 550 -Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~ 627 (777)
T KOG1128|consen 550 -PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLL 627 (777)
T ss_pred -CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhH
Confidence 334678999999999999999999999999998744 67888888889999999999999998876431 011444444
Q ss_pred HHHHHH
Q 017743 301 LLYKAY 306 (366)
Q Consensus 301 ~l~~~~ 306 (366)
.++...
T Consensus 628 ~iv~~~ 633 (777)
T KOG1128|consen 628 IIVRTV 633 (777)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-05 Score=60.61 Aligned_cols=244 Identities=17% Similarity=0.104 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH-
Q 017743 63 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME- 141 (366)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~- 141 (366)
.|.+..++..-..... .+.+...-.-+.++|...|....... ++.... .|....+..+.......++.++.+
T Consensus 21 ~Gnyq~~ine~~~~~~---~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSS---SKTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred hhHHHHHHHHHHhhcc---ccchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHH
Confidence 3446555555444332 12344444455666766666543332 222221 333334433333333344444333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
++.+.+.......+......-...|+..|++++|++..... . +......=+..+.+..+.+-|.+.++.|.+.
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 34444444433334344444455678888888888877652 1 2333333345556777788888888888864
Q ss_pred CCCCHHHHHHHHHHhhc----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 017743 222 YTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 297 (366)
.+..+.+.|.+++.+ .+....|.-+|++|.++ ..|+..+.+....++...|++++|..++++....... ++.
T Consensus 167 --ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpe 242 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPE 242 (299)
T ss_pred --chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHH
Confidence 245566656555543 45678888888888775 4567888888888888888888888888888877543 677
Q ss_pred HHHHHHHHHHhhchHHHH-HHHHHHHHh
Q 017743 298 TYKLLYKAYTKANMKELV-QKLLKRMEQ 324 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a-~~~~~~m~~ 324 (366)
+...++-+-...|+..++ .+.+..+..
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 777777666666665443 344444444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.2e-06 Score=63.69 Aligned_cols=159 Identities=13% Similarity=0.035 Sum_probs=93.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 017743 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239 (366)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 239 (366)
..+-..+...|+-+....+....... ...|.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44444555556666555555554332 22344444455666666666666666666666554 55666666666666666
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHH
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (366)
|+++.|..-|.+..+..+. ++..++.+.-.+.-.|+++.|..++......+. -|..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666666666665333 455556666666666666666666666655432 25555566666666666666666554
Q ss_pred HHH
Q 017743 320 KRM 322 (366)
Q Consensus 320 ~~m 322 (366)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.9e-05 Score=63.60 Aligned_cols=204 Identities=12% Similarity=0.052 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 140 (366)
...++.++...-+.++...+. .|+...+...+........-..+...+.+..+ +-......-....+...|++++|
T Consensus 249 p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A 325 (484)
T COG4783 249 PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEA 325 (484)
T ss_pred chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchH
Confidence 344566666666666543222 34455555555554444333333333333222 11222223333344566777888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
+..+..+.... +-|...+....+.+.+.++.++|.+.++++... .|+ ......+..++.+.|++.+|+.+++....
T Consensus 326 ~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 326 LKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 88888777652 335555566667777788888888888777764 333 55556667777777888877777777766
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 220 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
.. +-|+..|..|.++|...|+..++..-. ...+...|++++|...+....+.
T Consensus 403 ~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 403 ND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred cC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 54 556777777878777777766654432 33455567777777777666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-06 Score=62.74 Aligned_cols=95 Identities=12% Similarity=0.009 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 273 (366)
+......+...|++++|...|+...... +.+...|..+..++...|++++|...|+.....++. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3345555666677777777777666654 445566666666677777777777777777665543 56666666667777
Q ss_pred cCChhHHHHHHHHhhhC
Q 017743 274 NGLPTEADLLFENSHNM 290 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~ 290 (366)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766664
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.3e-05 Score=72.08 Aligned_cols=307 Identities=9% Similarity=0.011 Sum_probs=189.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCC------CChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC----
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMRNSGCR------PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN---- 85 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~g~~------p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 85 (366)
.....+...|++++|..+++.....--. +....-...+.+.. ....|++++|...++....... ..+
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~g~~~~A~~~~~~al~~~~-~~~~~~~ 490 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV--AINDGDPEEAERLAELALAELP-LTWYYSR 490 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHhcCC-CccHHHH
Confidence 3445566789999999999887543111 11111111111111 1134558888888887654211 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILA---P--DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCK--P 154 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~ 154 (366)
....+.+...+...|++++|...+.+....... + ...++..+...+...|++++|...+++.... +.. +
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 234556667778899999999999887753211 1 1234455667788899999999998876542 211 1
Q ss_pred -CHHHHHHHHHHHhccCChhHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC--CCCCHH
Q 017743 155 -DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK--EKP--TLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--YTPSFI 227 (366)
Q Consensus 155 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 227 (366)
....+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+++.|...+....... ......
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 22334455566777899999999988875531 112 23344445667778899999999988875421 111110
Q ss_pred --HH--HHHHHHhhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhC----CCCCC-
Q 017743 228 --TY--ECIITMYGYCDNVSRAREIFDELSKLGKDMK---VSTLNAMLEAYCMNGLPTEADLLFENSHNM----GVTPD- 295 (366)
Q Consensus 228 --~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~- 295 (366)
.. ...+..+...|+.+.|...+........... ...+..+..++...|++++|...+++.... |..++
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 10 1122344557899999988777554321111 112345677788899999999999887653 32222
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
..+...+..++...|+.++|...+.+..+.
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667777889999999999999988764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-05 Score=72.00 Aligned_cols=186 Identities=8% Similarity=-0.020 Sum_probs=139.7
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHH
Q 017743 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231 (366)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 231 (366)
...+...+-.|.......|.+++|..+++...+. .+.+......+...+.+.+++++|....++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 3456888888999999999999999999999885 23356677788888999999999999999998875 445677888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhch
Q 017743 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311 (366)
Q Consensus 232 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 311 (366)
+..++...|++++|..+|+++...+.. +..++..+..++-..|+.++|...|+...+.- .|....|+.++ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HH
Confidence 888889999999999999999985443 57888899999999999999999999887753 44556665554 33
Q ss_pred HHHHHHHHHHHHhC----CCCCChhHHHHHHHHhhccccc
Q 017743 312 KELVQKLLKRMEQN----GIVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 312 ~~~a~~~~~~m~~~----g~~~~~~~~~~ll~~~~~~~~~ 347 (366)
...-..+++++.-. |.......+...|.-+.+--..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNA 271 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCcc
Confidence 44445556666533 3333445566777766655433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-05 Score=71.18 Aligned_cols=135 Identities=11% Similarity=0.064 Sum_probs=106.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
+.+...+..|.....+.|..++|..+++.+.+.. +-+......+...+.+.+++++|+..+++....... +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 4567888888888888889999998888888763 234566777788888888899998888888877432 56667777
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
..++.+.|++++|..+|+++... .+.+..++..+..++...|+.++|...|+...+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 78888888999999999888873 3345778888888888888888888888888765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.0001 Score=66.16 Aligned_cols=285 Identities=13% Similarity=0.084 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C--------CCCC-hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-G--------CRPD-PSVYNALITAHLHTRDKAKALAKALGYFQKMKGM 79 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g--------~~p~-~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (366)
+..+|..+.+.|.+..+++-|.-.+..|... | -.|+ ...-.+++. . ..|.+++|+.++++-++
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA--i----eLgMlEeA~~lYr~ckR- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA--I----ELGMLEEALILYRQCKR- 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH--H----HHhhHHHHHHHHHHHHH-
Confidence 4567889999999999998888888777532 1 1121 111111111 1 55678999999988775
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----------H
Q 017743 80 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK----------S 149 (366)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------~ 149 (366)
|..|=..|...|.+++|.++-+.=.+.. -..||......+-..++.+.|++.|++.. .
T Consensus 829 ---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~ 896 (1416)
T KOG3617|consen 829 ---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK 896 (1416)
T ss_pred ---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH
Confidence 4455566777899999988876533221 23566666777777888888888877531 1
Q ss_pred CC---------CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcC--------------------CCCCHHHHHHHHHH
Q 017743 150 NQ---------CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK--------------------EKPTLPTFNSMIIN 200 (366)
Q Consensus 150 ~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~li~~ 200 (366)
.. -..|...|.-....+-..|+.+.|+.+|....+.- ..-|......+...
T Consensus 897 e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 897 EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARM 976 (1416)
T ss_pred hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHH
Confidence 11 11244445555555666788888888877654320 01233344445555
Q ss_pred HHhcCcHhHHHHHHHHHHhCC--------CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 201 YGKARLQGKAEYVFQKMTAMK--------YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
|...|++.+|..+|.+..... -..+...+|..+ .....+.-.|-+.|++. |. -+...+..|-
T Consensus 977 YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal--~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYH 1046 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLAL--MSGGSDLVSAARYYEEL---GG-----YAHKAVMLYH 1046 (1416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh--hcCchhHHHHHHHHHHc---ch-----hhhHHHHHHH
Confidence 555555555555555443210 000011111100 00111122222222221 10 1223344566
Q ss_pred hcCChhHHHHHHHH--------hh--hCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 273 MNGLPTEADLLFEN--------SH--NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 273 ~~g~~~~a~~~~~~--------~~--~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
+.|.+.+|+++.-+ ++ +.....|+...+.-.+.|....+++.|..++-..+
T Consensus 1047 kAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1047 KAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred hhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77777777665322 11 22334567777777778888888888887765543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.2e-05 Score=60.89 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 017743 207 QGKAEYVFQKMTAMKYTPSF-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285 (366)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (366)
..-|.+.|+-.-..+..-|. ..-.++..++.-..++++.+..+..+...-..-|...+ .+.++++..|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 34445555444443332221 12233344444455566666666665554222222222 35566666666666666666
Q ss_pred HhhhCCCCCCHHHH-HHHHHHHHhhchHHHHHHHHHH
Q 017743 286 NSHNMGVTPDSSTY-KLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 286 ~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
......++ |..+| ..|.++|.+.++.+.|+.++-+
T Consensus 418 ~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 418 RISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred hhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 65544444 34444 3444556666666666554433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00014 Score=63.44 Aligned_cols=311 Identities=8% Similarity=0.038 Sum_probs=194.5
Q ss_pred cCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH
Q 017743 8 IADTGI-YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86 (366)
Q Consensus 8 ~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 86 (366)
+|-..+ |..++. +-..+++...+.+.+.+.+. .|+..---+ |.++.- ...|+-++|......-.+ +...+.
T Consensus 4 ~~KE~~lF~~~lk-~yE~kQYkkgLK~~~~iL~k--~~eHgeslA-mkGL~L--~~lg~~~ea~~~vr~glr--~d~~S~ 75 (700)
T KOG1156|consen 4 SPKENALFRRALK-CYETKQYKKGLKLIKQILKK--FPEHGESLA-MKGLTL--NCLGKKEEAYELVRLGLR--NDLKSH 75 (700)
T ss_pred ChHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHh--CCccchhHH-hccchh--hcccchHHHHHHHHHHhc--cCcccc
Confidence 344334 344444 55778888888888888764 232221111 111110 133457788888777664 335677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
++|..+.-.+....++++|++.|......+ +-|...+.-+--.-++.++++........+.+.. +.....|..+..++
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQ 153 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 889999888888999999999999999875 4467777777777778888888888888777753 33566788888888
Q ss_pred hccCChhHHHHHHHHHHhcCC-CCCHHHHHHHHH------HHHhcCcHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhc
Q 017743 167 GKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMII------NYGKARLQGKAEYVFQKMTAMKYTPSFI-TYECIITMYGY 238 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 238 (366)
.-.|+...|..+++...+... .|+...+.-... ...+.|..+.|.+.+...... ..|.. .-..-...+.+
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHH
Confidence 889999999999999887642 456555544332 334567777777666554432 12222 22344556778
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHhhhCCCCCCHHHHHHH-HHHHHhhchHHHHH
Q 017743 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM-NGLPTEADLLFENSHNMGVTPDSSTYKLL-YKAYTKANMKELVQ 316 (366)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~ 316 (366)
.+++++|..++..+...++. +...|..+..++.+ .+..+....+|....+. .|-...-..+ +.........+...
T Consensus 232 l~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred HhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHH
Confidence 89999999999999997644 44455555555543 33333333666665443 1111111111 11111133344556
Q ss_pred HHHHHHHhCCCCCChhH
Q 017743 317 KLLKRMEQNGIVPNKRF 333 (366)
Q Consensus 317 ~~~~~m~~~g~~~~~~~ 333 (366)
+++..+.+.|+++-...
T Consensus 309 kyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKD 325 (700)
T ss_pred HHHHHHhhcCCCchhhh
Confidence 67777788887664433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.1e-06 Score=60.12 Aligned_cols=94 Identities=9% Similarity=-0.050 Sum_probs=53.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (366)
.....+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34455555666666666666655532 2245555555666666666666666666666543 334555555666666666
Q ss_pred cHHHHHHHHHHHHhCC
Q 017743 241 NVSRAREIFDELSKLG 256 (366)
Q Consensus 241 ~~~~a~~~~~~~~~~~ 256 (366)
++++|...|+...+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666655543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-06 Score=61.38 Aligned_cols=94 Identities=12% Similarity=-0.031 Sum_probs=46.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
...+...+...|++++|...|+.+...++. +...+..+...+...|++++|...++...+.+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 334444444455555555555555444322 44445555555555555555555555544433 2234444444555555
Q ss_pred hchHHHHHHHHHHHHh
Q 017743 309 ANMKELVQKLLKRMEQ 324 (366)
Q Consensus 309 ~~~~~~a~~~~~~m~~ 324 (366)
.|+++.|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.4e-05 Score=69.32 Aligned_cols=246 Identities=16% Similarity=0.218 Sum_probs=142.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 017743 19 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98 (366)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (366)
..+...+-+++|..+|++.. .+....+.++. ..+.+++|.++-++.. .+..|..+..+-.+
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie-------~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE-------NIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQ 1116 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH-------HhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHh
Confidence 44455556667777666543 23444444443 3344666666655543 34568888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 017743 99 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 178 (366)
.|.+.+|++-|-+. -|+..|..++....+.|.+++-.+++....+..-.|.+. +.++-+|.+.++..+.++.
T Consensus 1117 ~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 88888887766432 266778888888888888888888887777665555544 4677788888877766554
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH-------
Q 017743 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE------- 251 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------- 251 (366)
+ .-|+......+..-|...+.++.|.-+|.... .|..|...+...|+++.|...-+.
T Consensus 1189 i-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1189 I-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred h-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 3 34566666666666666666666665554432 244444444445555444332221
Q ss_pred -----------------HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 252 -----------------LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 252 -----------------~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
|-..++-....-...++..|-..|.+++.+.+++...... +.....|+-|.-.|++
T Consensus 1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHh
Confidence 1112222234445556666666666666666655443221 1223344444444444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00028 Score=68.49 Aligned_cols=262 Identities=8% Similarity=0.013 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHhcCCC-----CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHH
Q 017743 64 KALAKALGYFQKMKGMER-----CKPN--IVTYNILLRACAQARNVDQVNALFKELHESILAPDI----YTYNGVMDAYG 132 (366)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~-----~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~ 132 (366)
++++++...+........ ..+. ......+...+...|+++.|...+++....-...+. ...+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 346676666665532110 0111 122223344566789999999999988763111121 23455566677
Q ss_pred hcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc----CCC--C-CHHHHHHHHHH
Q 017743 133 KNGMIKEMESVLSRMKSN----QC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KEK--P-TLPTFNSMIIN 200 (366)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~ 200 (366)
..|++++|...+.+.... |. .....++..+...+...|+++.|...+++.... +.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 899999999998887642 11 111234455667788899999999988876542 211 1 12334455566
Q ss_pred HHhcCcHhHHHHHHHHHHhCC--CCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC-CHHHH-----HHHHHH
Q 017743 201 YGKARLQGKAEYVFQKMTAMK--YTP--SFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTL-----NAMLEA 270 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~ 270 (366)
+...|++++|...+.+..... ..+ ....+..+...+...|+.++|...++......... ....+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 777899999999988775431 112 23345556667788999999999888875421110 11111 112244
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 271 YCMNGLPTEADLLFENSHNMGVTPD---SSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+...|+.+.|..++........... ...+..+..++...|+.++|...+++....
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5568899999998877654321111 112456777888899999999999887653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.7e-05 Score=70.10 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=141.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT-YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (366)
+.+...+..|+..+...+++++|.++.+...+. .|+... |..+...+.+.++.+++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 445678889999999999999999999977765 455433 33333455556664444333 3
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (366)
++.......++..+..+...+.+. .-+...+..+..+|-+.|+.+++..+|+++.+.. +-+..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 444444555554445555555542 2344466677777778888888888888887776 55677777777777777 7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHh--cCChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhhchHHHH
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLE---AYCM--NGLPTEADLLFENSHNM-GVTPDSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~--~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a 315 (366)
+++|.+++.......+ +..-|+.+.. -++. ..+.+.-..+.+.+... |..--..++..+...|...++|+++
T Consensus 165 L~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 165 KEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 8888777776655311 0001111111 1111 11223333333333332 3233445666677788888999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhh
Q 017743 316 QKLLKRMEQNGIVPNKRFFLEALETFS 342 (366)
Q Consensus 316 ~~~~~~m~~~g~~~~~~~~~~ll~~~~ 342 (366)
..+++.+.+..- -|......++.+|.
T Consensus 243 i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 999999998532 24455666666665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.5e-05 Score=57.44 Aligned_cols=258 Identities=13% Similarity=0.094 Sum_probs=163.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (366)
|+...|+ ++-+.-.|.+..++..-+..... +-+...-..+-++|...| +......+++. +-.|....
T Consensus 8 ~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg-------~~~~~~~eI~~--~~~~~lqA 74 (299)
T KOG3081|consen 8 PEDELFN--IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALG-------QYQIVISEIKE--GKATPLQA 74 (299)
T ss_pred cchhHHH--HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcc-------ccccccccccc--ccCChHHH
Confidence 4444453 45555678888777765554432 123333333334443222 22223334432 11334444
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 017743 89 YNILLRACAQARNVDQVN-ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (366)
+..+......-++.+.-. ++.+.+.......+......-...|+..|++++|++...... +......=...+.
T Consensus 75 vr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 75 VRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILL 148 (299)
T ss_pred HHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHH
Confidence 444444444444444433 344444444333333334444567889999999999988722 3344444455667
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHH
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 243 (366)
+..+++.|.+.++.|.+. .+..+.+.|.+++.+ .+...+|.-+|++|.++- +|++.+.+....++...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHH
Confidence 888899999999999773 255666667666654 357889999999998753 789999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHhhhC
Q 017743 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENSHNM 290 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~ 290 (366)
+|..+++....+..+ ++.+...+|-+-...|...++ .+.+..++..
T Consensus 225 eAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 225 EAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999999988766 677777777777777766554 5666666654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.9e-06 Score=59.40 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 270 (366)
......+...+...|++++|...++.+...+ +.+...+..+...+...|++++|..+++...+.++. +...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 3445556666677777777777777776654 445667777777777777777777777777666533 56666667777
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHH
Q 017743 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYK 300 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 300 (366)
+...|++++|...|+...+. .|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 77778888888877777764 34444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00016 Score=55.76 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHHc---C-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 017743 100 RNVDQVNALFKELHES---I-LAPDIY-TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174 (366)
Q Consensus 100 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (366)
.+.++..+++.+++.. | ..++.. .|..++-+....|+.+-|...++++...- +-+..+-..-.-.+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4456666666665542 2 222222 23334444455556666666666555442 2222222222222334555666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
|+++++.+++.. +.|..++-.-+-..-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 666666665543 223444443344444445555555555554443 244555666666666666666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhh
Q 017743 255 LGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHN 289 (366)
Q Consensus 255 ~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~ 289 (366)
..+. ++..+..+...+...| +.+-+.++|.+..+
T Consensus 183 ~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4322 3444444444433333 33445555555544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00035 Score=64.31 Aligned_cols=231 Identities=10% Similarity=0.125 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhH-----HHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY-----NALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~-----~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 84 (366)
|+......+.++...+-..+-.++++++.- .|+.++- |.++-... ..+..+..++.+++...+ .|
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL---~~S~Fse~~nLQnLLiLtAi-----kad~trVm~YI~rLdnyD--a~ 1052 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVL---DNSVFSENRNLQNLLILTAI-----KADRTRVMEYINRLDNYD--AP 1052 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhc---CCcccccchhhhhhHHHHHh-----hcChHHHHHHHHHhccCC--ch
Confidence 455555667777777777777777777753 2332222 22221111 111233444444443211 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
+ +...+..++-+++|+.+|+... .+..+.+.|+. .-+.++.|.++-+... .+.+|+.+..
T Consensus 1053 ~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlak 1112 (1666)
T KOG0985|consen 1053 D------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAK 1112 (1666)
T ss_pred h------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHH
Confidence 2 2233445555666666665432 12333333332 2234444444443321 3445666666
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (366)
+-.+.|...+|++-|-+. .|+..|.-++....+.|.+++..+.+.-..+....|.. =+.|+-+|++.+++.+
T Consensus 1113 AQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1113 AQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHH
Confidence 666666666665544332 24555666666666666666666666555554433432 2455556666666555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 017743 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285 (366)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (366)
..+++ ..||......+..-|...|.++.|.-+|.
T Consensus 1185 lE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1185 LEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 44433 12344444444555555555554444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00023 Score=54.93 Aligned_cols=187 Identities=10% Similarity=0.069 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHhcC--CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHH
Q 017743 66 LAKALGYFQKMKGM--ER-CKPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIY-TYNGVMDAYGKNGMIKEM 140 (366)
Q Consensus 66 ~~~a~~~~~~~~~~--~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a 140 (366)
.++.++++..+... .| ..++.. .|..++-+....|+.+.|...++.+...- |... .-..-.-.+-..|++++|
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhH
Confidence 44444444444321 22 345554 35566667778899999999999988763 3332 222222234457899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
.++++.+.+.. +-|..++..=+-..-..|+.-+|++-+....+. +..|...|.-+...|...|+++.|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 99999999886 446777776666777778888999888888876 6779999999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHhhcc---CcHHHHHHHHHHHHhCCC
Q 017743 221 KYTPSFITYECIITMYGYC---DNVSRAREIFDELSKLGK 257 (366)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~ 257 (366)
. |.++..+..+...+.-. .+...+.+.|.+..+.+.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 4 44455555555554433 467788899998888754
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00073 Score=60.39 Aligned_cols=207 Identities=12% Similarity=0.069 Sum_probs=120.3
Q ss_pred cccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017743 6 WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (366)
.+.-|+..|..+.-++...|+++.+.+.|++...-- .-..+.|..+-..+. ..|.-..|..+++.......-+++
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~s----aag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYS----AAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHH----HhccchHHHHHHHhhcccccCCCc
Confidence 455688999999999999999999999999876422 224455655555554 334466777777766543222334
Q ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc--CC--CCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHH
Q 017743 86 IVTYNILLRACAQ-ARNVDQVNALFKELHES--IL--APDIYTYNGVMDAYGKN-----------GMIKEMESVLSRMKS 149 (366)
Q Consensus 86 ~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~ 149 (366)
...+-..-..|.+ .+..+++..+-.++... +. ......|..+.-+|... ....++++.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 4444444444443 35566666665555541 10 11223333333333221 123456666666666
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 017743 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 218 (366)
.+.. |..+...+.--|...++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+...
T Consensus 473 ~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 473 FDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred cCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 5432 2222222333455667777777777777776556667777777666666777777766665543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00011 Score=65.14 Aligned_cols=170 Identities=14% Similarity=0.182 Sum_probs=105.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (366)
.+.+......+.+|+.+++.+.... .-..-|-.+...|...|+++.|.++|.+.- .++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3455566777888888888777653 223345666778888888888888886532 24556778888888
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 017743 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 251 (366)
|..|.++-.+.. |.......|-+-..-+-+.|++.+|++++-.+. .|+. .|.+|-+.|..+..+++.+.
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 888888876653 244445556665666667777777777665443 3432 34556666666666655544
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
-... .-..+...+..-+-..|++..|..-|-+
T Consensus 876 ~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 876 HHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 3221 1123444455555556666666555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00019 Score=60.63 Aligned_cols=154 Identities=14% Similarity=0.039 Sum_probs=91.6
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCcHHH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSR 244 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 244 (366)
+...|+++.|+..++.++.. .+.|+..+......+.+.++..+|.+.++++... .|+ ....-.+..++.+.|++++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 44556667777777766554 3345555556666666777777777777776665 343 4455556666677777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
|..+++......+. |+..|..|.++|...|+..++.....+ .+...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 77777766665444 666777777777777766665544332 33445666666666666554
Q ss_pred CC--CCCChhHHHHHHHHh
Q 017743 325 NG--IVPNKRFFLEALETF 341 (366)
Q Consensus 325 ~g--~~~~~~~~~~ll~~~ 341 (366)
.. -.|+..-+...|...
T Consensus 454 ~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 454 QVKLGFPDWARADARIDQL 472 (484)
T ss_pred hccCCcHHHHHHHHHHHHH
Confidence 41 234444444444433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-07 Score=48.81 Aligned_cols=35 Identities=37% Similarity=0.510 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP 46 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~ 46 (366)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999974
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.7e-07 Score=48.00 Aligned_cols=33 Identities=33% Similarity=0.644 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 44 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p 44 (366)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.2e-05 Score=66.47 Aligned_cols=242 Identities=14% Similarity=0.140 Sum_probs=146.4
Q ss_pred ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------
Q 017743 45 DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-------- 116 (366)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------- 116 (366)
|..|-..+++.-... ..|.++.|.+..+-++ +...|..|.+.|.+..+++-|.-.+-.|....
T Consensus 725 d~~TRkaml~FSfyv--tiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYV--TIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred CHHHHHhhhceeEEE--EeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 555555555432111 3345777777766655 44578888888888888777766665554210
Q ss_pred -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHH
Q 017743 117 -LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195 (366)
Q Consensus 117 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 195 (366)
..|+ .+-....-.....|.+++|..+|.+-+.. ..|=..|-..|.|++|.++-+.--. +. =..||.
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy 862 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYY 862 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHH
Confidence 1121 22222233345667788888888776543 2333455667777777776543211 11 123444
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHh----------C---------CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 196 SMIINYGKARLQGKAEYVFQKMTA----------M---------KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 196 ~li~~~~~~~~~~~a~~~~~~~~~----------~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
.....+...++.+.|++.|++... . ....|...|......+...|+.+.|+.+|....+
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 455555556666666666654211 1 0123445566666666778888888888866543
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
|-+++...|-.|+.++|.++.++- -|......+.+.|-..|++.+|..+|.+.+
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455667777788888888877652 366667778888888888888888887754
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-05 Score=68.73 Aligned_cols=124 Identities=17% Similarity=0.150 Sum_probs=98.4
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 017743 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKL--GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298 (366)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 298 (366)
+.+.+......++..+....+++.+..++-..... ....-..+..++|+.|...|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33566777888888888888888888888877765 2222344556888999999999999999888888899999999
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 017743 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 344 (366)
++.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888777777777777777776665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0017 Score=59.14 Aligned_cols=228 Identities=12% Similarity=0.121 Sum_probs=152.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 017743 21 MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 100 (366)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (366)
....+++.+|....+++.+. .|+. .|..++.++... +.|..++|..+++...... ..|..|...+-.+|...+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~--r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLF--RLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHH--HhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHh
Confidence 45678999999999998775 3444 456666666543 5577889998888876532 337889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------
Q 017743 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ---------- 170 (366)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------- 170 (366)
+.++|..+|++.... .|+..-...+..+|.+.+++.+-.+.--++.+. .+.+...+=.+++.+....
T Consensus 92 ~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 999999999998875 577777888888999988887655554444443 2334444444554443321
Q ss_pred ChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCcHhHHHHHHHH-HHhCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 017743 171 AFDKMEQVFKSLMHSK-EKPTLPTFNSMIINYGKARLQGKAEYVFQK-MTAMKYTPSFITYECIITMYGYCDNVSRAREI 248 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 248 (366)
-..-|.+.++.+.+.+ ..-+..-...-...+...|.+++|.+++.. .-+.-..-+...-+.-+..+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 1234566666666654 211222222223334567889999999843 33333334445556677778888999999999
Q ss_pred HHHHHhCCCC
Q 017743 249 FDELSKLGKD 258 (366)
Q Consensus 249 ~~~~~~~~~~ 258 (366)
-.++...+..
T Consensus 249 ~~~Ll~k~~D 258 (932)
T KOG2053|consen 249 SSRLLEKGND 258 (932)
T ss_pred HHHHHHhCCc
Confidence 9888888654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.6e-07 Score=47.16 Aligned_cols=33 Identities=36% Similarity=0.489 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 330 (366)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.5e-07 Score=46.60 Aligned_cols=32 Identities=31% Similarity=0.557 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhCCCCC
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~ 329 (366)
+|+.++.+|.+.|+++.|..+|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55666666666666666666666666655554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-05 Score=65.65 Aligned_cols=120 Identities=14% Similarity=0.077 Sum_probs=56.4
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (366)
++..+...++++.|..+|+++.+.. |+. ...++..+...++..+|.+++++..... +-+......-...+...++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3333444455555555555554432 222 2234444444444455555555544332 2234444444444555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
.+.|..+.+++.+..+. +..+|..|..+|...|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555554322 3445555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0014 Score=56.41 Aligned_cols=128 Identities=16% Similarity=0.090 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
|...+..-.+..-...|..+|.+..+.+..+ +..++++++..+| .++...|.++|+--.++- .-++.-....+..+.
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLS 446 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHH
Confidence 4444455555556666666676666665555 4556666666665 455566667766544431 113344455566666
Q ss_pred hcCChhHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 273 MNGLPTEADLLFENSHNMGVTPD--SSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
..|+-..+..+|++....++.|+ ...|..++..=+.-|+...+.++-+++.
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 66666667777777666644444 3566666666666666666666655543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.1e-05 Score=65.55 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
.....++..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+..+..+. +......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344556777777899999999999999874 55 4455778887888899999999999876544 677788888889
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.+.++++.|+.+.+++.+.. +-+..+|..|..+|...|+++.|+-.++.+--
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999864 22567999999999999999999999987753
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0013 Score=59.77 Aligned_cols=222 Identities=18% Similarity=0.102 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLR--ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 139 (366)
..+++.+|+....++.+. .||... ...+. ...+.|+.++|..+++.....+.. |..|...+-.+|...++.++
T Consensus 21 d~~qfkkal~~~~kllkk---~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK---HPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHH---CCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 455688888888887764 344432 22223 356889999999888887766544 88899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----------cHhH
Q 017743 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR----------LQGK 209 (366)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------~~~~ 209 (366)
|..+|+...+. .|+......+..+|.+.+.+.+-.+.--++-+. .+.+...+-++++...+.. -..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999876 567777888888888888876554444444332 3334444444555444321 1234
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 210 AEYVFQKMTAMKYTP-SFITYECIITMYGYCDNVSRAREIFD-ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 210 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
|.+.++.+.+.+-+. +..-...-...+...|++++|+.++. ...+.-...+...-+.-+..+...+++.+..++..++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 566666666554121 12222222334456788999999984 4444434445566667778888889999999988888
Q ss_pred hhCC
Q 017743 288 HNMG 291 (366)
Q Consensus 288 ~~~~ 291 (366)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8876
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.1e-05 Score=54.44 Aligned_cols=124 Identities=10% Similarity=0.025 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH--HHHHHHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPS---FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV--STLNAML 268 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li 268 (366)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333333 3556666666666666542 222 122333445556666667776666666665432221 2333455
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHH
Q 017743 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
..+...|++++|+..++...... .....+....+.+.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666677777766665533222 2334455566666667777777666654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0011 Score=53.65 Aligned_cols=272 Identities=13% Similarity=0.081 Sum_probs=192.8
Q ss_pred CCHHHHHHH---HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH-HHHhhchHHHHHHHHHHHHHHHHhcCCCCC-
Q 017743 9 ADTGIYSKL---IAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-TAHLHTRDKAKALAKALGYFQKMKGMERCK- 83 (366)
Q Consensus 9 ~~~~~~~~l---i~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~- 83 (366)
-|+..|.++ ...|...|+-..|+.=++..++. +||-..-..-- ..+. +.|.++.|..-|+.........
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll----K~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL----KQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh----hcccHHHHHHHHHHHHhcCCCcc
Confidence 344455444 35677888888899888888875 67654322111 1122 6677999999999988642100
Q ss_pred CCHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 017743 84 PNIVT------------YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151 (366)
Q Consensus 84 ~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 151 (366)
.+... ....+..+...|+...|+.....+++.. +.|...+..-..+|...|.+..|+.=++...+..
T Consensus 141 ~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs 219 (504)
T KOG0624|consen 141 LVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS 219 (504)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Confidence 01111 2234455667899999999999998863 5688888888999999999999998888877654
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHH-------------HHHHHhcCcHhHHHHHHHHHH
Q 017743 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM-------------IINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------i~~~~~~~~~~~a~~~~~~~~ 218 (366)
..+..++..+-..+...|+.+.++...++.++ ..||...+... +......+++.++.+-.+...
T Consensus 220 -~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 220 -QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred -ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34677777778888899999999999999987 45554432211 122344577777877777777
Q ss_pred hCCCCCCH---HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 219 AMKYTPSF---ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 219 ~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
+....... ..+..+-.++...+++.+|++...+..+.... |+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 66422122 23456667778889999999999999886433 58888888889999999999999999888764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.9e-05 Score=67.15 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESI--LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (366)
+.+......+++.+....+++.+..++.+..... ...-..|..++++.|.+.|..++++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3445555556666666666666666666665541 21223344566666666666666666666666666666666667
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 203 (366)
.+|+.+.+.|++..|.++...|...+...+..++...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666655555555555544444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00024 Score=51.96 Aligned_cols=125 Identities=10% Similarity=0.047 Sum_probs=70.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT--LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIIT 234 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 234 (366)
|..++..+ ..++...+...++.+........ ....-.+...+...|++++|...|+.+......|+ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344433 35666666666666666422211 12233344556666777777777777766542222 123344556
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
.+...|++++|+..++...... .....+......+...|++++|...|+.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666777777777775543322 2344556666677777777777777665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00067 Score=60.53 Aligned_cols=167 Identities=16% Similarity=0.175 Sum_probs=100.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcH
Q 017743 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207 (366)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 207 (366)
+.+......|.+|+.+++.+..... -..-|..+.+.|...|+++.|.++|-+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3444556677777777777766532 3445667777888888888888877654 1245567778888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 208 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
+.|.++-.+... ...+...|-.-..-+-+.|++.+|.+++-.+-. |+ ..|..|-+.|..+..+++..+-
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 888777665542 234445566656666677777777776643321 22 3456677777777777776653
Q ss_pred hhCCCCCCHHHHHHHHHHHHhhchHHHHHHHH
Q 017743 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319 (366)
Q Consensus 288 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (366)
.... -..|...+..-+...|+...|..-|
T Consensus 877 h~d~---l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 877 HGDH---LHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred Chhh---hhHHHHHHHHHHHhccChhHHHHHH
Confidence 2211 1234444444444455555544443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0028 Score=55.11 Aligned_cols=127 Identities=19% Similarity=0.145 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHH--------HHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC------C
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQ--------KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL------G 256 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 256 (366)
..+.-.+++.....|+++.|.+++. .+.+.+..|. +...++..+.+.++-+.|..++...... +
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~ 453 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG 453 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc
Confidence 3344556666778888888888888 4555444444 4455566666666666666666665432 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHH
Q 017743 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
-..-..++..+...-.+.|+-++|..+++++.+.. ++|..+...++.+|++.. .+.|..+-+.
T Consensus 454 s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 454 SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 01112233334444556799999999999999875 568999999999998753 5556555443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.2e-05 Score=51.11 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=48.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhhc--------hHHHHHHHHHHHHhCCCCCChhHHHHH
Q 017743 267 MLEAYCMNGLPTEADLLFENSHNMGV-TPDSSTYKLLYKAYTKAN--------MKELVQKLLKRMEQNGIVPNKRFFLEA 337 (366)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~~~~~l 337 (366)
.|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. +.-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444445666666666666666666 666666666666654422 344566677777777777777777777
Q ss_pred HHHhhc
Q 017743 338 LETFSS 343 (366)
Q Consensus 338 l~~~~~ 343 (366)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 766654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00011 Score=60.02 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
+|..++....+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555666666666666666666666432 2223333333332 12234555566666666655 233566666666666
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 272 CMNGLPTEADLLFENSHNMGVTPDS---STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
...|+.+.|..+|++.... +.++. ..|...++.=.+.|+.+.+.++.+++.+ ..|+...+..++.-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 6666666676666666654 22222 3666666666666777766666666665 334444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.8e-05 Score=49.85 Aligned_cols=76 Identities=11% Similarity=0.089 Sum_probs=39.6
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccC--------cHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCD--------NVSRAREIFDELSKLGKDMKVSTLNAM 267 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (366)
.|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444666666666666666665 556666666665554332 223344455555555555555555555
Q ss_pred HHHHH
Q 017743 268 LEAYC 272 (366)
Q Consensus 268 i~~~~ 272 (366)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 54443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.6e-06 Score=43.02 Aligned_cols=31 Identities=39% Similarity=0.474 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC 42 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~ 42 (366)
.+|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00014 Score=48.41 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=52.2
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhh
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 309 (366)
..+...+...|++++|...++...+.... +...+..+...+...|++++|.+.++...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 33444455556666666666665554322 33455555566666666666666666655543 22334555666666666
Q ss_pred chHHHHHHHHHHHHh
Q 017743 310 NMKELVQKLLKRMEQ 324 (366)
Q Consensus 310 ~~~~~a~~~~~~m~~ 324 (366)
|+++.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666665544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00013 Score=48.66 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=50.7
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 017743 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275 (366)
Q Consensus 196 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 275 (366)
.+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.++........ +..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence 34444555566666666666555442 223344555555555566666666666665554322 3345555666666666
Q ss_pred ChhHHHHHHHHhhh
Q 017743 276 LPTEADLLFENSHN 289 (366)
Q Consensus 276 ~~~~a~~~~~~~~~ 289 (366)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666665544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0023 Score=54.99 Aligned_cols=213 Identities=12% Similarity=0.050 Sum_probs=154.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------H
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN-------L 161 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~ 161 (366)
...+.+...+..+++.|.+.+....... -+..-++....+|...|...++...-+...+.|.. ...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4567777888889999999999988874 35555677778888888888887777776666532 222222 2
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHH-------------------------HHHHHHHHHhcCcHhHHHHHHHH
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT-------------------------FNSMIINYGKARLQGKAEYVFQK 216 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~li~~~~~~~~~~~a~~~~~~ 216 (366)
+..+|.+.++++.++..|.+.+.....|+... ...-...+.+.|++..|...|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34466777888999988887765433333222 11123456788999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
++... +-|...|..-.-+|.+.|.+..|+.-.+...+.++. ....|..=..++....++++|.+.|.+..+.+ |+.
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~ 459 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSN 459 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chh
Confidence 99886 667889999999999999999999988888887543 45566666667777789999999999998865 555
Q ss_pred HHHHHHHHHHHh
Q 017743 297 STYKLLYKAYTK 308 (366)
Q Consensus 297 ~~~~~l~~~~~~ 308 (366)
.-+.--++-|..
T Consensus 460 ~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 460 AEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHH
Confidence 544444444444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.5e-05 Score=52.10 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=48.0
Q ss_pred cCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 239 CDNVSRAREIFDELSKLGKD-MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
.|+++.|..+++.+.+.... ++...+..+..++.+.|++++|..+++. .+.+. .+......+.++|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35677777777777665432 2344455567777777777777777766 32221 123444455667777777777777
Q ss_pred HHHH
Q 017743 318 LLKR 321 (366)
Q Consensus 318 ~~~~ 321 (366)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7664
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00018 Score=61.03 Aligned_cols=102 Identities=11% Similarity=-0.046 Sum_probs=82.6
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
...+...|+++.|+..|.+.++.. +.+...|..+..++...|++++|...++.+...... +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 455677899999999999998875 456778888888999999999999999999887654 677888889999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHH
Q 017743 278 TEADLLFENSHNMGVTPDSSTYKLLY 303 (366)
Q Consensus 278 ~~a~~~~~~~~~~~~~p~~~~~~~l~ 303 (366)
++|...|++..+.+ |+.......+
T Consensus 87 ~eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 99999999988754 5544444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00042 Score=48.64 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=9.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 017743 92 LLRACAQARNVDQVNALFKELH 113 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~ 113 (366)
+...+.+.|++++|.+.|..+.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~ 29 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFL 29 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.3e-06 Score=41.65 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0042 Score=49.65 Aligned_cols=177 Identities=13% Similarity=0.049 Sum_probs=94.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 017743 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF---NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203 (366)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 203 (366)
....+...|++++|.+.|+++......+ .... -.++.++.+.++++.|...++++.+..+.....-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444455667777777777766542221 1111 23455666777777777777777664332222222222222221
Q ss_pred --c---------------Cc---HhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHH
Q 017743 204 --A---------------RL---QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263 (366)
Q Consensus 204 --~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 263 (366)
. .+ ...|...|+.++ .-|-...-..+|...+..+... -...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 0 01 122333333333 3333333344555444444332 0111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNM--GVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
--.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 224566688888888888888888765 223345666778888888888888887766554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0005 Score=48.22 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC--CCHHHHHHH
Q 017743 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK--PTLPTFNSM 197 (366)
Q Consensus 122 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 197 (366)
.++..+...+.+.|++++|.+.|..+.+.... .....+..+..++.+.|+++.|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34566677777788888888888888765321 11345666777788888888888888887764322 124556667
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
..++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 777778888888888888887764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00065 Score=49.08 Aligned_cols=89 Identities=13% Similarity=-0.012 Sum_probs=41.6
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++.+|+..|......++. ++..+-.+..++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCH
Confidence 333444455555555555444432 223334444444444455555555555554444432 444444444555555555
Q ss_pred hHHHHHHHHhh
Q 017743 278 TEADLLFENSH 288 (366)
Q Consensus 278 ~~a~~~~~~~~ 288 (366)
+.|.+.|+..+
T Consensus 120 ~~A~~aF~~Ai 130 (157)
T PRK15363 120 CYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00035 Score=59.34 Aligned_cols=94 Identities=9% Similarity=-0.058 Sum_probs=75.3
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (366)
-...+...|+++.|++.|++.+.... .+...|..+..+|...|++++|...+++.+... +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 34556778899999999999887633 367778888888888999999999998888765 4456778888888888999
Q ss_pred HHHHHHHHHHHHhCCC
Q 017743 242 VSRAREIFDELSKLGK 257 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~ 257 (366)
+++|...|+...+.++
T Consensus 86 ~~eA~~~~~~al~l~P 101 (356)
T PLN03088 86 YQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999988887653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00018 Score=56.97 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=55.6
Q ss_pred HHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 017743 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 280 (366)
+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+.....+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 345566666666666666553 334555555566666666666666666665554433 345566666666666666666
Q ss_pred HHHHHHhhhCCCCCCHHHHH
Q 017743 281 DLLFENSHNMGVTPDSSTYK 300 (366)
Q Consensus 281 ~~~~~~~~~~~~~p~~~~~~ 300 (366)
++.|++.++ +.|+-.+|.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 666666555 345544443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0011 Score=47.93 Aligned_cols=87 Identities=11% Similarity=0.003 Sum_probs=44.5
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 315 (366)
+...|++++|.++|+.+....+. +..-|-.|.-++-..|++++|+..|......++ -|+..+-.+..++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 34455555555555555544333 444445555555555555555555555554442 2445555555555555555555
Q ss_pred HHHHHHHHh
Q 017743 316 QKLLKRMEQ 324 (366)
Q Consensus 316 ~~~~~~m~~ 324 (366)
.+.|+..+.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0056 Score=52.85 Aligned_cols=149 Identities=11% Similarity=0.056 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHH
Q 017743 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQ 215 (366)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 215 (366)
.+.....++++......--.-+|..++....+..-...|..+|.+..+.+..+ .+...++++..++ .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44444555554433222223344555555555555666666666665554444 4445555555444 345555666665
Q ss_pred HHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
--.+.- ..++.-....+..+...++-..+..+|++....+..| ....|..++..-..-|++..+.++-+++
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 544331 2223333444455555555556666666665553332 2355666666656666666655555444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0051 Score=57.01 Aligned_cols=182 Identities=13% Similarity=0.043 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 017743 66 LAKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 144 (366)
...|+..|-+..+. .++ ...|..|...|....+...|.+.|+...+.+ ..+..........|++..+++.|..+.
T Consensus 474 ~~~al~ali~alrl---d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRALRL---DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 55666666555432 333 4578889999998889999999999988764 336677888889999999999999884
Q ss_pred HHHHHCCC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC
Q 017743 145 SRMKSNQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223 (366)
Q Consensus 145 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 223 (366)
-...+... ..-...|....-.|...++...++.-|+...... +.|...|..+.++|...|++..|.++|.+.... .
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 33332210 1112223334555778889999999999887753 347889999999999999999999999888775 3
Q ss_pred CCH-HHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 224 PSF-ITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 224 ~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
|+. ..--...-.-+..|++.+|...+..+..
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 432 2111222234567888888888877654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00045 Score=52.39 Aligned_cols=87 Identities=21% Similarity=0.331 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------CHHHHH
Q 017743 83 KPNIVTYNILLRACAQ-----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG----------------MIKEME 141 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 141 (366)
..+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|+..+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4567777777777764 3667777788888888888888888888888765421 123345
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKR 169 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (366)
+++++|...|+-||..++..+++.+++.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 5555555555555555555555554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0012 Score=49.93 Aligned_cols=91 Identities=12% Similarity=0.040 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455677888888889999999999999887543222 3577888888899999999999999888763 2245666667
Q ss_pred HHHHhccCChhHHH
Q 017743 163 IDSYGKRQAFDKME 176 (366)
Q Consensus 163 ~~~~~~~~~~~~a~ 176 (366)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777776654444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.021 Score=53.26 Aligned_cols=184 Identities=13% Similarity=0.032 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHH
Q 017743 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179 (366)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 179 (366)
++...|+..|-+..+.... =...|..|...|+...+...|.+.|+...+... -+........+.|....+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3466677776666554321 245688888888888888899999998877642 26677788889999999999998883
Q ss_pred HHHHhcCC-CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC
Q 017743 180 KSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258 (366)
Q Consensus 180 ~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (366)
-..-+... .....-|....-.|...++...+..-|+...+.. +.|...|..+.++|.++|++..|.++|.+....++.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 33222110 0111223333445667788889999898888765 557789999999999999999999999888876533
Q ss_pred CCHHHHHHH--HHHHHhcCChhHHHHHHHHhhh
Q 017743 259 MKVSTLNAM--LEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 259 ~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~ 289 (366)
..|... .-.-+..|.+.+|...+.....
T Consensus 629 ---s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 ---SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred ---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 223222 2234567888888888776653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0014 Score=49.54 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD--IITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 124 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++...
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444455555555555555443321111 23344444444444555555554444444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00069 Score=55.51 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA-YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
+|..+++..-+.+..+.|.++|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 44555555555555555555555555322 1122223222222 11133444455555555443 333445555555555
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTL---PTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
.+.++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 21111 2445555444455555555555554444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.4e-05 Score=49.83 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=8.0
Q ss_pred HHHHHHhcCcHhHHHHHHHH
Q 017743 197 MIINYGKARLQGKAEYVFQK 216 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~ 216 (366)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33334444444444444433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00047 Score=52.28 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH
Q 017743 188 KPTLPTFNSMIINYGKA-----RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262 (366)
Q Consensus 188 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 262 (366)
..+-.+|..++..|.+. |..+-....++.|.+.|+.-|..+|+.|++.+=+ |.+- | ..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p-~n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------P-RN 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------c-cc
Confidence 34677777777777643 5666666677777777877788888887777654 3321 1 11
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhch
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 311 (366)
.+.++...|- .+-+-|++++++|...|+-||..|+..+++.|.+.+.
T Consensus 107 ~fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111111 2345578888888888888888888888888866543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0038 Score=55.67 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=98.9
Q ss_pred CCCCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhcc--------CcHHHHHHHHHHH
Q 017743 187 EKPTLPTFNSMIINYGKA-----RLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYC--------DNVSRAREIFDEL 252 (366)
Q Consensus 187 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~ 252 (366)
.+.+...|...+.+.... +....|..+|++..+. .|+ ...|..+..++... .++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 456778888888875432 3467899999999987 455 44555444433221 1233444444443
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh
Q 017743 253 SKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 253 ~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
... ....+...|.++.-.....|++++|...+++....+ |+...|..+...+...|+.++|...+++... +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 123356778877777777899999999999999865 6888999999999999999999999999887 44554
Q ss_pred hHH
Q 017743 332 RFF 334 (366)
Q Consensus 332 ~~~ 334 (366)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0009 Score=50.33 Aligned_cols=61 Identities=10% Similarity=-0.051 Sum_probs=27.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP--TLPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
+..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555555544321111 122444444445555555555555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0025 Score=52.41 Aligned_cols=212 Identities=13% Similarity=0.165 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 91 (366)
..|......|...|++++|.+.|.+......+.+.. + .....+..|-.++.+... .--...|..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~-~-----------~Aa~~~~~Aa~~~k~~~~----~~Ai~~~~~ 99 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK-F-----------EAAKAYEEAANCYKKGDP----DEAIECYEK 99 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H-H-----------HHHHHHHHHHHHHHHTTH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH-H-----------HHHHHHHHHHHHHHhhCH----HHHHHHHHH
Confidence 456667777777777777777777664321110000 0 011123334444443310 111234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHH
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN-GMIKEMESVLSRMKSN----QCK-PDIITFNLLIDS 165 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~ 165 (366)
.+..|...|++..|-+++..+ ...|... |++++|++.|.+..+. +.+ .-..++..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 566666677766666655554 3344455 7788888887776432 211 113455667778
Q ss_pred HhccCChhHHHHHHHHHHhcCCCC-----CHH-HHHHHHHHHHhcCcHhHHHHHHHHHHhCC--CCCC--HHHHHHHHHH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKP-----TLP-TFNSMIINYGKARLQGKAEYVFQKMTAMK--YTPS--FITYECIITM 235 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~ 235 (366)
+.+.|++++|.++|+++....... +.. .+...+-++...||+..|...+++..... +..+ ......|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 888889999999998887643221 221 23344446667788888888888887552 2222 3466777777
Q ss_pred hhcc--CcHHHHHHHHHHHHh
Q 017743 236 YGYC--DNVSRAREIFDELSK 254 (366)
Q Consensus 236 ~~~~--~~~~~a~~~~~~~~~ 254 (366)
+-.. ..++.+..-|+.+.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTSS-
T ss_pred HHhCCHHHHHHHHHHHcccCc
Confidence 7532 345666666655543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00071 Score=50.91 Aligned_cols=81 Identities=11% Similarity=-0.052 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP--SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 268 (366)
...+..+...+...|++++|...+++.......+ ...++..+..++...|++++|...++........ ....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 3444555555666667777777666665442121 1235566666666666666666666666654322 234444444
Q ss_pred HHHH
Q 017743 269 EAYC 272 (366)
Q Consensus 269 ~~~~ 272 (366)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0093 Score=53.28 Aligned_cols=141 Identities=13% Similarity=0.015 Sum_probs=89.7
Q ss_pred cccCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhc----hHHHHHHHHHHHHHHH
Q 017743 6 WYIADTGIYSKLIAVMGKKG-----QTRLAMWLFSEMRNSGCRPDPS-VYNALITAHLHT----RDKAKALAKALGYFQK 75 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~-----~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~----~~~~~~~~~a~~~~~~ 75 (366)
..+.|..+|...+++..... ...+|..+|++..+. .|+.. .|..+..++... ......+..+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44567788888887755432 377899999998876 56543 333322222111 0112334555555555
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 017743 76 MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150 (366)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 150 (366)
.......+.+...|..+.-.....|++++|...+++..... |+...|..+...+...|+.++|.+.+++....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33321234455667777666667788888888888888764 57777888888888888888888888877665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0034 Score=51.66 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=80.2
Q ss_pred cHhHHHHHHHHHHh----CCCCCC--HHHHHHHHHHhhcc-CcHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHh
Q 017743 206 LQGKAEYVFQKMTA----MKYTPS--FITYECIITMYGYC-DNVSRAREIFDELSKL----GK-DMKVSTLNAMLEAYCM 273 (366)
Q Consensus 206 ~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~ 273 (366)
++++|...+++... .| .|+ ...+..+...|... |+++.|.+.|+...+. +. ..-...+..+...+.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 66666666655432 23 232 23556666777777 8888888888876542 21 0113456677778888
Q ss_pred cCChhHHHHHHHHhhhCCC-----CCCHH-HHHHHHHHHHhhchHHHHHHHHHHHHhC--CCCCC--hhHHHHHHHHhhc
Q 017743 274 NGLPTEADLLFENSHNMGV-----TPDSS-TYKLLYKAYTKANMKELVQKLLKRMEQN--GIVPN--KRFFLEALETFSS 343 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~-----~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~~~--~~~~~~ll~~~~~ 343 (366)
.|++++|.++|++...... +++.. .|...+-.+...|+...|.+.+++.... ++..+ ......+|+++-.
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 8888888888888765422 11222 2333444666778888888888888754 33333 3456666666654
Q ss_pred c
Q 017743 344 S 344 (366)
Q Consensus 344 ~ 344 (366)
.
T Consensus 248 ~ 248 (282)
T PF14938_consen 248 G 248 (282)
T ss_dssp T
T ss_pred C
Confidence 3
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00087 Score=53.28 Aligned_cols=152 Identities=13% Similarity=0.098 Sum_probs=103.4
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHH
Q 017743 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243 (366)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 243 (366)
.-..+.+++.+|+..|.+.++. .+.|...|..-..+|.+.|.++.|++--+..+..+ +-...+|..|..+|...|++.
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4477899999999999999986 33477888888999999999999999888888764 334679999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCChh---HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHH
Q 017743 244 RAREIFDELSKLGKDMKVSTLNAMLEAY-CMNGLPT---EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (366)
+|.+.|+...+. .|+-.+|-.=+... -+.+... .+..-++.....|..|+...... ...........+.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~-----~~l~nnp~l~~~~ 239 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN-----GDLMNNPQLMQLA 239 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc-----cccccCHHHHHHH
Confidence 999999998885 55655655433332 2233333 23333333333444444332111 2223334455556
Q ss_pred HHHHh
Q 017743 320 KRMEQ 324 (366)
Q Consensus 320 ~~m~~ 324 (366)
..|..
T Consensus 240 ~~m~~ 244 (304)
T KOG0553|consen 240 SQMMK 244 (304)
T ss_pred HHHhh
Confidence 66665
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00027 Score=43.89 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=31.3
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
..|++++|..+|+.+....+. +...+..+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356666666666666655444 5555556666666666666666666666554
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0066 Score=48.66 Aligned_cols=102 Identities=13% Similarity=0.053 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhhCCCCCCHHHH
Q 017743 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHNMGVTPDSSTY 299 (366)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~ 299 (366)
+-|...|..|...|...|+.+.|..-|....+...+ ++..+..+..++.... .-.++..+|+++...+. -|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 556778888888888888888888888887776433 6666766666655433 34567788888877663 367777
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 300 KLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
..|...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 778888888888888888888888753
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0045 Score=43.10 Aligned_cols=90 Identities=8% Similarity=-0.065 Sum_probs=47.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhc
Q 017743 93 LRACAQARNVDQVNALFKELHESILAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PDIITFNLLIDSYGK 168 (366)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 168 (366)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++....... .+......+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445556666666666666666654432 233444555566666666666666666544211 011222222334555
Q ss_pred cCChhHHHHHHHHH
Q 017743 169 RQAFDKMEQVFKSL 182 (366)
Q Consensus 169 ~~~~~~a~~~~~~~ 182 (366)
.|+.++|++.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 56666666665544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0085 Score=41.73 Aligned_cols=56 Identities=11% Similarity=0.034 Sum_probs=27.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 129 DAYGKNGMIKEMESVLSRMKSNQCKPD--IITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555544322 22333344445555555555555555544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00057 Score=41.96 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=26.7
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..+...|++++|.+.|+.+.+... -+...+..+..++...|++++|..+|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555554431 1444445555555555555555555555543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00045 Score=42.90 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=52.6
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 017743 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 338 (366)
...|++++|+++|+.+...... +...+..+..+|.+.|++++|..+++++... .|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4689999999999999887533 8888889999999999999999999999884 46655555554
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.029 Score=44.89 Aligned_cols=184 Identities=13% Similarity=0.059 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY---NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (366)
+...+-.....+...|++++|.+.|+.+...-.. +...- ..+..++.+.+++++|...+++..+........-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3433444555667789999999999999886322 22222 4556788899999999999999987643322333333
Q ss_pred HHHHHhc--c---------------CC---hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 162 LIDSYGK--R---------------QA---FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 162 l~~~~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
.+.+.+. . .| ...|...|+.+++. -|+ ..-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH-
Confidence 3333221 1 11 23444555555553 222 22233444333333321
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKL--GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
.- ..--.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 174 --la-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LA-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HH-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 01 11124556677788888888888888765 223345566677788888888888887766543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.013 Score=51.90 Aligned_cols=257 Identities=15% Similarity=0.106 Sum_probs=127.5
Q ss_pred cccCCHHHHHHHHHHHHhcCChhHHHHHH---------HHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 017743 6 WYIADTGIYSKLIAVMGKKGQTRLAMWLF---------SEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~---------~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~ 76 (366)
.+.|....+.+-+..|...|.+++|.++- +.+... ..+.-.++..-.+|.+.++ -.+-+.+.-++++
T Consensus 551 ~i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRd--l~~L~li~EL~~~ 626 (1081)
T KOG1538|consen 551 SISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRD--LRYLELISELEER 626 (1081)
T ss_pred eeecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence 35566667777778888899988887642 111110 1122233334444443322 1233333344455
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHC
Q 017743 77 KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI-YTYN-----GVMDAYGKNGMIKEMESVLSRMKSN 150 (366)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~ 150 (366)
++ .|-.|+... +...|+-.|.+.+|.++|.+- |..... ..|+ -...-+...|..++-..+.++-.+.
T Consensus 627 k~-rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W 699 (1081)
T KOG1538|consen 627 KK-RGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW 699 (1081)
T ss_pred Hh-cCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence 54 444566543 455667778888888887543 322000 0010 1122233334433333333322111
Q ss_pred --CC-CCCHHHHHHHHHHHhccCChhHHHHHHHH------HHhcC---CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 017743 151 --QC-KPDIITFNLLIDSYGKRQAFDKMEQVFKS------LMHSK---EKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 151 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 218 (366)
.+ +| ......+...|+.++|..+.-+ +.+-+ -..+..+...+...+.+...+..|.++|..|-
T Consensus 700 Ar~~keP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 700 ARNIKEP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred hhhcCCc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 01 11 1223344455655555544211 11111 12234455555555566667777777777765
Q ss_pred hCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV-----------STLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 219 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
.. ..+++.....++|++|..+-+...+. .|++ .-|...-.+|.+.|+-.+|..+++++
T Consensus 775 D~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 775 DL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred cH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 42 34667777888888888887776553 2221 12233334566666666666666665
Q ss_pred hh
Q 017743 288 HN 289 (366)
Q Consensus 288 ~~ 289 (366)
..
T Consensus 844 tn 845 (1081)
T KOG1538|consen 844 TN 845 (1081)
T ss_pred hh
Confidence 43
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0095 Score=46.66 Aligned_cols=129 Identities=10% Similarity=-0.063 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHH-----HHHH
Q 017743 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN-----AMLE 269 (366)
Q Consensus 195 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~li~ 269 (366)
+.++..+...+.+.-...++.+.++...+.++.....|.+.-...|+.+.|...|++..+..-+.+....+ ....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 33444444455555555555555554434445555555555555566666655555544332222222222 2222
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.|.-.+++..|...+.++...+.+ |+...+.-.-+..-.|+..+|++.++.|.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333445555555555555544322 333344444444445555566666665555
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00086 Score=41.74 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc-hHHHHHHHHHHHHh
Q 017743 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN-MKELVQKLLKRMEQ 324 (366)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~ 324 (366)
++..|..+...+...|++++|+..|.+..+.+. -+...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345666666666667777777777766666542 24556666666666666 56667666666554
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.006 Score=50.92 Aligned_cols=265 Identities=13% Similarity=-0.004 Sum_probs=153.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHH----HHHHHhhchHHHHHHHHHHHHHHHHh---cCCCC-CCCHHHHH
Q 017743 19 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNA----LITAHLHTRDKAKALAKALGYFQKMK---GMERC-KPNIVTYN 90 (366)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~----ll~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~-~~~~~~~~ 90 (366)
.-+|+.|+....+.+|+..++.|.. |..+.++ |-++|. ..+++++|+++...-. +.-|- .-...+..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyf----yL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYF----YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhh----hHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 4588999999999999999988754 5554444 444444 4455888887643210 00000 01111222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----HcCC-CCChhhHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 017743 91 ILLRACAQARNVDQVNALFKELH----ESIL-APDIYTYNGVMDAYGKNGM--------------------IKEMESVLS 145 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~ 145 (366)
.|.+.+--.|.+++|.-...+-+ +.|- ......+..+...|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 33344444556666654433221 1220 1123455566666655443 233444444
Q ss_pred HHH----HCCC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHh----cCCC-CCHHHHHHHHHHHHhcCcHhHHHHHHH
Q 017743 146 RMK----SNQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH----SKEK-PTLPTFNSMIINYGKARLQGKAEYVFQ 215 (366)
Q Consensus 146 ~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~ 215 (366)
+=. +.|- -.-...|..|...|.-.|+++.|+...+.-+. -|-. .....+..+..++.-.|+++.|.+.|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 321 1110 01234566666677778899999876654322 1211 124567778888888899999998887
Q ss_pred HHHh----CC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 017743 216 KMTA----MK-YTPSFITYECIITMYGYCDNVSRAREIFDELSK----L-GKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285 (366)
Q Consensus 216 ~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (366)
.-.. .| ......+..+|...|.-..++++|+..+.+-.. . ...-....+-+|..+|...|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6432 22 123345677788888888888888887765332 1 111246677788899999999999887766
Q ss_pred Hhh
Q 017743 286 NSH 288 (366)
Q Consensus 286 ~~~ 288 (366)
.-+
T Consensus 340 ~hl 342 (639)
T KOG1130|consen 340 LHL 342 (639)
T ss_pred HHH
Confidence 544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00062 Score=41.80 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=31.0
Q ss_pred HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
..+...|++++|...|+.+.+..+. +...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556666666666666655433 555555566666666666666666665554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.047 Score=45.53 Aligned_cols=109 Identities=12% Similarity=0.023 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
+.+..|.-+...|+...|.++-++.. .|+...|...+.+++..++|++-.++-.. . -++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45556777778899888888866664 68899999999999999999988775432 1 14577999999999
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHH
Q 017743 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888772 2 24456777888888888765433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.026 Score=41.89 Aligned_cols=101 Identities=6% Similarity=0.028 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC---CCCCHHHH
Q 017743 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITY 229 (366)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 229 (366)
.|++..-..+..+....|+..+|...|.+....-.-.|......+.++....+++..|...++.+.+.. ..|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 344444444555555555555555555554433233344444444444444555555555555444432 1122 22
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
-.+.+.+...|+...|..-|+.....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 23334444444544455555444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.017 Score=42.19 Aligned_cols=85 Identities=7% Similarity=-0.047 Sum_probs=50.1
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
..|++++|..+|..+...++. +..-|..|..++-..+++++|+..|......+. -|+..+.....++...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 456666666666666555443 455556666666666666666666665544332 244445555566666666666666
Q ss_pred HHHHHHh
Q 017743 318 LLKRMEQ 324 (366)
Q Consensus 318 ~~~~m~~ 324 (366)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 6666665
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0014 Score=40.83 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=6.9
Q ss_pred HhhccCcHHHHHHHHHHHH
Q 017743 235 MYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~ 253 (366)
.+...|++++|+..|+...
T Consensus 12 ~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.021 Score=45.92 Aligned_cols=103 Identities=11% Similarity=0.049 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc---CcHHHHHHHHHHHHhCCCCCCHHH
Q 017743 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DNVSRAREIFDELSKLGKDMKVST 263 (366)
Q Consensus 187 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~ 263 (366)
-+-|...|..|...|...|+.+.|..-|.+..+.. .++...+..+..++... ....++..+|+++...+.. |+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 34578889999999999999999999999888764 45666666666665543 2456788899999888655 7888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
...|...+...|++.+|...|+.|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8888889999999999999999998864
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0016 Score=47.64 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH-----hCCCCCChhHH
Q 017743 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME-----QNGIVPNKRFF 334 (366)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-----~~g~~~~~~~~ 334 (366)
.....++..+...|++++|..++..+.... +.|...|..+++++...|+...|.++|+++. +.|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345566667777888888888888877765 3367778888888888888888888877764 23777776643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.051 Score=42.29 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=42.6
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH----HHHHHHHH
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS----STYKLLYK 304 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~ 304 (366)
+..++.-|=...-..+|...+..+.+. -...--.+...|.+.|.+..|..-++.+++. -|+. .....++.
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~ 186 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAE 186 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHH
Confidence 334444444445555555555444432 1112223556677777777777777777765 2332 34466667
Q ss_pred HHHhhchHHHH
Q 017743 305 AYTKANMKELV 315 (366)
Q Consensus 305 ~~~~~~~~~~a 315 (366)
++.+.|..+.+
T Consensus 187 ~y~~l~~~~~a 197 (203)
T PF13525_consen 187 AYYKLGLKQAA 197 (203)
T ss_dssp HHHHTT-HHHH
T ss_pred HHHHhCChHHH
Confidence 77777766644
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.021 Score=46.12 Aligned_cols=87 Identities=8% Similarity=-0.046 Sum_probs=36.6
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhhchHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGV--TPDSSTYKLLYKAYTKANMKE 313 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~ 313 (366)
+.|++++|...|+.+.+..+... ...+-.+...|...|++++|...|..+.+.-. ......+..+...+...|+.+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 33445555544544444322210 22334444444555555555555554443210 001222333333444455555
Q ss_pred HHHHHHHHHHh
Q 017743 314 LVQKLLKRMEQ 324 (366)
Q Consensus 314 ~a~~~~~~m~~ 324 (366)
.|..+|+.+.+
T Consensus 235 ~A~~~~~~vi~ 245 (263)
T PRK10803 235 KAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0089 Score=42.08 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 304 (366)
|..++..++.++++.|+++....+++..= |+.++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566677777777777777766665432 12111000 0000 1122345677777777888
Q ss_pred HHHhhchHHHHHHHHHHHHh-CCCCCChhHHHHHHHHhhcccc
Q 017743 305 AYTKANMKELVQKLLKRMEQ-NGIVPNKRFFLEALETFSSSLA 346 (366)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~ 346 (366)
+|...|++..|+++++...+ .++..+..++..+++.+-.+..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 88777888888887777764 3777777777777776655544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.013 Score=47.26 Aligned_cols=86 Identities=9% Similarity=0.051 Sum_probs=35.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccC
Q 017743 97 AQARNVDQVNALFKELHESILAPDI----YTYNGVMDAYGKNGMIKEMESVLSRMKSNQC--KPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 170 (366)
.+.|++++|...|+.+++.- |+. .++..+..+|...|++++|...|..+.+.-. +.....+..+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 33445555555555544431 221 2344444444444555555544444443210 011222222333344444
Q ss_pred ChhHHHHHHHHHHh
Q 017743 171 AFDKMEQVFKSLMH 184 (366)
Q Consensus 171 ~~~~a~~~~~~~~~ 184 (366)
+.+.|..+|+.+.+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.045 Score=40.04 Aligned_cols=90 Identities=10% Similarity=0.002 Sum_probs=63.5
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
..-+...|++++|..+|+-+...+ .-+..-|..|..++-..+++++|...|......+.. |+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCH
Confidence 334456788888888888777654 334555677777777788888888888776655432 444555667788888888
Q ss_pred hHHHHHHHHhhh
Q 017743 278 TEADLLFENSHN 289 (366)
Q Consensus 278 ~~a~~~~~~~~~ 289 (366)
+.|...|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888887766
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.095 Score=43.72 Aligned_cols=123 Identities=17% Similarity=0.056 Sum_probs=91.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (366)
+.+..+.-+...|+...|.++-.++ -.|+...|...+.+++..++|++...+-.. . -++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 4445566677889999998887777 458999999999999999999988876542 2 23467899999999
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 306 (366)
+.|+..+|...... ++ +..-+..|.+.|++.+|.+...+.. |......+...+
T Consensus 249 ~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~ 301 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRC 301 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHC
Confidence 99999999888766 11 2556788899999999987755432 444444444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.055 Score=40.26 Aligned_cols=127 Identities=15% Similarity=0.071 Sum_probs=68.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CCHHHHHH
Q 017743 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNS 196 (366)
Q Consensus 118 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 196 (366)
.|+...-..|..++...|+..+|...|.+....-+..|....-.+.++....+++..|...++.+.+.... -++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555566666666666666666666655444455556666666666666666666666666554210 01122334
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 246 (366)
+...+...|.+..|+.-|+..... -|+...-......+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 455566666666666666666654 344333333333445555554443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.11 Score=43.68 Aligned_cols=276 Identities=12% Similarity=-0.017 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
+...+..|+..+....+. ++.+...|..=+..+...|++++|.--.+.-++.... ......-.-+++...++..+|.
T Consensus 61 k~k~Y~nal~~yt~Ai~~--~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDM--CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHhhHHHHHHHHHHHHHh--CccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHHHH
Confidence 444566666666666542 2444555555555566666776666555444432100 1112222222333333333333
Q ss_pred HHHH---------------HHHHCCC-CCCHHHHHHH-HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 017743 142 SVLS---------------RMKSNQC-KPDIITFNLL-IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204 (366)
Q Consensus 142 ~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 204 (366)
+.++ ....... +|...++..+ ..++.-.|++++|.++--..++... .+......--.++.-.
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYN 216 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccc
Confidence 2222 1111111 1333334333 2345567888888777666655421 1222222222333455
Q ss_pred CcHhHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHhhccCcHHHHHHHHHHHHhC---CCCCCHHHHHHHH
Q 017743 205 RLQGKAEYVFQKMTAMKYTPSFITY-------------ECIITMYGYCDNVSRAREIFDELSKL---GKDMKVSTLNAML 268 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li 268 (366)
++.+.+...|++.+..+ |+...- ..=..-..+.|++..|.+.|.+.+.. +.+++...|....
T Consensus 217 ~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 77778888887777653 443221 11123345678888888888887764 3456667777777
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhcc
Q 017743 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP-NKRFFLEALETFSSS 344 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~ 344 (366)
.+..+.|+.++|+.-.++....+.. -...|..-..++...++|++|.+-++...+....+ ...++.....++-.|
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS 370 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 7788889999998888877663210 12233333345666788888888888876653322 344555555555444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0058 Score=38.41 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=27.6
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.|.+.+++++|.++++.+...++ .+...+......+...|++++|...++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455555555555555555432 2444444455555555555555555555554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0046 Score=45.25 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=41.6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh-----hCCCCCCHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH-----NMGVTPDSST 298 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~ 298 (366)
....++..+...|++++|..+.+.+....+- +...|..+|.+|...|+..+|.+.|+.+. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666677777777777777766543 66677777777777777777777776654 3466776655
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.11 Score=41.00 Aligned_cols=134 Identities=10% Similarity=-0.023 Sum_probs=100.0
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHH-----HHH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY-----ECI 232 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l 232 (366)
+.+.++..+...|.+.-....+++.++...+.++.....+.+.-.+.||.+.|...|+...+..-..+.... ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345566777778888889999999998877778888889999999999999999999977754333333333 333
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 017743 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292 (366)
Q Consensus 233 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 292 (366)
...+.-.+++..|...+.++...+.. ++...|.-.-+..-.|+...|.+.++.|....+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34556677888888888888876544 556666555555567899999999999988643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.18 Score=42.67 Aligned_cols=77 Identities=12% Similarity=0.068 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 017743 125 NGVMDAYGKNGMIKEMESVLSRMKSNQ---CKPDIITFNLLIDSYGK---RQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198 (366)
Q Consensus 125 ~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 198 (366)
..++-.|....+++..+++.+.+.... +..+..+-....-++.+ .|+.++|++++..+......+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344444555566666666666655431 11112222223334444 566666666666544444455555555554
Q ss_pred HHH
Q 017743 199 INY 201 (366)
Q Consensus 199 ~~~ 201 (366)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.027 Score=39.66 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAYCM 273 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 273 (366)
..|+..+..+++.+|+..+++..|.++++.+.+. +++.+..+|..|++-...
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4566666666666666666777776666665543 455556666666655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0079 Score=37.79 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=32.7
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
.|...+++++|.++++.+...++. ++..+.....++...|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445556666666666666665443 5555555666666666666666666666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.13 Score=40.00 Aligned_cols=172 Identities=17% Similarity=0.104 Sum_probs=85.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 91 ILLRACAQARNVDQVNALFKELHESIL--APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
.....+...|++.+|.+.|+.+...-. +.-......++.++.+.|++++|...++...+.-......-+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344456677888888888888776521 112234455667777788888888888877654222111112222222111
Q ss_pred -------------cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 169 -------------RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235 (366)
Q Consensus 169 -------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (366)
.+....|...|+.+ +.-|-...-..+|...+..+... . ...--.+...
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~l---------------i~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEEL---------------IKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHH---------------HHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHH---------------HHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHH
Confidence 11122333333333 33333333344444444433321 0 1111235566
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEAD 281 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 281 (366)
|.+.|.+..|..-++.+.+.-+.. .....-.++.+|.+.|..+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 778888888888888887763221 1234566777777777776443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.15 Score=42.10 Aligned_cols=138 Identities=11% Similarity=0.195 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHh--hchHHHHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHhcCC-
Q 017743 27 TRLAMWLFSEMRNSGCRPDPSVYNALITAHL--HTRDKAKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARN- 101 (366)
Q Consensus 27 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~- 101 (366)
+++...+++.|.+.|.+-+..+|-+...... ...+......+|..+++.|++.... .++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 5667888899999998888877766443332 2334556788999999999875443 2344455555433 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 102 ---VDQVNALFKELHESILAPDIY--TYNGVMDAYGKNGM--IKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 102 ---~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
.+.+..+|+.+.+.|+..+.. ....++........ ..++.++++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 356777888888877654432 23333333322222 347788888888888887777766554433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0049 Score=39.40 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhC----CC-CCC-HHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 262 STLNAMLEAYCMNGLPTEADLLFENSHNM----GV-TPD-SSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+...+...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666677777777777666665532 11 111 3456666667777777777777776654
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.025 Score=48.44 Aligned_cols=67 Identities=7% Similarity=-0.131 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV---STLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+.+...++.+..+|...|++++|...|+...+.++. +. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345678899999999999999999999998887544 22 35888999999999999999999998875
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.14 Score=43.77 Aligned_cols=143 Identities=13% Similarity=0.183 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF-NLLIDS 165 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~ 165 (366)
+|...++...+..-++.|..+|-++.+.| +.++..++++++..++ .|+...|.++|+.=... -||...| ...+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 45555666666666667777777766666 4556666666666555 35666666666654333 2233332 344555
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPT--LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (366)
+...++-+.|..+|+..... +..+ ...|..+|..-..-|+...+..+-+.+.+. .|...+...+.+.|
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 56666666676666644433 2222 345666666666666666666666665553 34444444443333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.33 Score=41.08 Aligned_cols=280 Identities=11% Similarity=-0.033 Sum_probs=158.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS-VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLR 94 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (366)
..-..+.+..++..|+..+....+.+ |+.. -|..-...+. ..+.+++|+--.+.-.+.. +-........-+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m----~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~ 125 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLM----MLGRFEEALGDARQSVRLK--DGFSKGQLREGQ 125 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHH----HHHhHhhcccchhhheecC--CCccccccchhh
Confidence 34455667778889999998888764 4333 3333222233 3344666665554443321 111112223333
Q ss_pred HHHhcCCHHHHHHHHH------------H---HHHcC-CCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 017743 95 ACAQARNVDQVNALFK------------E---LHESI-LAPDIYTYNGVM-DAYGKNGMIKEMESVLSRMKSNQCKPDII 157 (366)
Q Consensus 95 ~~~~~~~~~~a~~~~~------------~---~~~~~-~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 157 (366)
++...++..+|.+.++ . +.... -+|...++..+- .++...|+.++|..+--...+.... +..
T Consensus 126 c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~ 204 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAE 204 (486)
T ss_pred hhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhH
Confidence 3333333333333332 1 11111 112223333332 4556788888888887777665321 333
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHH-------------HHHHHHHHHhcCcHhHHHHHHHHHHhC---C
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT-------------FNSMIINYGKARLQGKAEYVFQKMTAM---K 221 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~~~~~~a~~~~~~~~~~---~ 221 (366)
....-..++.-.++.+.+...|++.+..+ |+... +..-..-..+.|.+..|.+.+.+.+.. +
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 22222334556788899999999887743 33322 111223345789999999999998865 3
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHH
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-DSSTYK 300 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~ 300 (366)
..|+...|.....+..+.|++.+|+.--+...+.+.. -...|..-..++...++|++|.+-++...+..-.+ ...++.
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~ 361 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLR 361 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 4566677888888889999999999988888775321 12233334455666789999999998877653222 233444
Q ss_pred HHHHHHH
Q 017743 301 LLYKAYT 307 (366)
Q Consensus 301 ~l~~~~~ 307 (366)
....++-
T Consensus 362 ~A~~aLk 368 (486)
T KOG0550|consen 362 EAQLALK 368 (486)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.025 Score=44.90 Aligned_cols=89 Identities=17% Similarity=0.288 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------CHHHHH
Q 017743 83 KPNIVTYNILLRACAQ-----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG----------------MIKEME 141 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 141 (366)
+.|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+.. +-+=++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4567777777777764 3567888888899999999999999999998775533 223478
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (366)
+++++|...|+.||..+-..+++++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 899999999999999999999999887665
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.037 Score=46.45 Aligned_cols=261 Identities=8% Similarity=0.001 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH--HHc--CCC-CChhhHHHHHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNI----VTYNILLRACAQARNVDQVNALFKEL--HES--ILA-PDIYTYNGVMDAYG 132 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~~-~~~~~~~~ll~~~~ 132 (366)
+.|+......+|+...+.. ..|. ..|..|.++|.-.+++++|.++...= +.. |-+ -...+...|...+-
T Consensus 29 k~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred hccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 4555888899999887632 2232 34666777777788888888865321 111 100 01122223334444
Q ss_pred hcCCHHHHHHHHHH----HHHCCC-CCCHHHHHHHHHHHhccCC--------------------hhHHHHHHHHHHh---
Q 017743 133 KNGMIKEMESVLSR----MKSNQC-KPDIITFNLLIDSYGKRQA--------------------FDKMEQVFKSLMH--- 184 (366)
Q Consensus 133 ~~~~~~~a~~~~~~----~~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~--- 184 (366)
-.|.+++|+-.-.. ..+.|- ......+..+...|...|+ ++.|.+.|.+-++
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665433221 111110 1123344455566654433 2334444433221
Q ss_pred -cCC-CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH----hCCCC-CCHHHHHHHHHHhhccCcHHHHHHHHHHHHh---
Q 017743 185 -SKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMT----AMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSK--- 254 (366)
Q Consensus 185 -~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 254 (366)
.|- -.-...|..+...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+....
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 110 0112346666666677799999988776433 23322 2245788899999999999999998886432
Q ss_pred -CC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh----C-CCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 255 -LG-KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN----M-GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 255 -~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.| ......+.-+|...|.-..++++|+.++.+-.. . +..-....+..|..+|...|..+.|+.+...-.+
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 122355566788888888899999888776432 1 1223567889999999999999999888776554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.13 Score=45.12 Aligned_cols=106 Identities=8% Similarity=0.067 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
.+.++..+-+.|..+.|+++...-. .-.....+.|+++.|.++.++. ++...|..|.+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4555555555555555554443321 1133444555555555543332 244555555555555
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
.|+++-|.+.|.+..+ +..++-.|.-.|+.+...++.+.....|
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 5666555555555422 3444444555555555555554444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.4 Score=40.71 Aligned_cols=167 Identities=13% Similarity=0.005 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCcHhHHHHHHHHHHhCCCCCCHHHHH
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSK---EKPTLPTFNSMIINYGK---ARLQGKAEYVFQKMTAMKYTPSFITYE 230 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 230 (366)
.+...++-+|....+++..+++.+.+.... +......-.....++.+ .|+.++|.+++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334456667999999999999999997641 11122233344556666 899999999999966666678888888
Q ss_pred HHHHHhhc---------cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hh---HHHHHH---HH-hhhCC--
Q 017743 231 CIITMYGY---------CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL-PT---EADLLF---EN-SHNMG-- 291 (366)
Q Consensus 231 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~---~a~~~~---~~-~~~~~-- 291 (366)
.+.+.|-. ...+++|...|.+.-+.. |+..+=-.++..+...|. .+ +..++- .. ..+.|
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 87776632 234778888887766543 333221112222222332 22 222222 11 22233
Q ss_pred -CCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 292 -VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 292 -~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
-..+-..+.+++.++.-.|+.+.|.+.+++|.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2345566788899999999999999999999976
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.59 Score=42.47 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=43.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh---hHHHHHHHHh
Q 017743 266 AMLEAYCMNGLPTEADLLFENSHNM-GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK---RFFLEALETF 341 (366)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~ 341 (366)
.|.+--...|..+.|+..--.+.+. ++-|....|+.+.-+.+....+...-+.|-++....--|+. ..=...++.|
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La~~iF 1105 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLAFRIF 1105 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHHHHHh
Confidence 3334444566666666554444332 35566677777766666666666666666665544333332 2223344555
Q ss_pred hcccc
Q 017743 342 SSSLA 346 (366)
Q Consensus 342 ~~~~~ 346 (366)
++...
T Consensus 1106 sk~~p 1110 (1189)
T KOG2041|consen 1106 SKNPP 1110 (1189)
T ss_pred ccCCC
Confidence 55443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.35 Score=39.78 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 017743 123 TYNGVMDAYGKNGMIK---EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199 (366)
Q Consensus 123 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 199 (366)
++..++.+|...+..+ +|.++++.+.... +-...++..-+..+.+.++.+.+.+++.+|+.. +......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 4556666777666544 4555666664442 223445555566666678888888888888765 2212333444444
Q ss_pred HHHh--cCcHhHHHHHHHHHHhCCCCCC
Q 017743 200 NYGK--ARLQGKAEYVFQKMTAMKYTPS 225 (366)
Q Consensus 200 ~~~~--~~~~~~a~~~~~~~~~~~~~~~ 225 (366)
.+.. ......+...+..+....+.|.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 4321 1223344455554444333433
|
It is also involved in sporulation []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0093 Score=38.08 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC---CC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESI--LA---PD-IYTYNGVMDAYGKNGMIKEMESVLSRM 147 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 147 (366)
.+++.+...|...|++++|...|++..+.. .. |+ ..++..+..++...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 355666666666666666666666655421 11 11 334455555556666666666665554
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.026 Score=44.84 Aligned_cols=103 Identities=13% Similarity=0.258 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHhhc-----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 017743 224 PSFITYECIITMYGY-----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298 (366)
Q Consensus 224 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 298 (366)
-|..+|...+..+.. .++++-....++.|.+.|+.-|..+|+.|++.+-+.. +.| ...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP-~nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIP-QNV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------ccc-HHH
Confidence 355556666655543 3455656666677777777777777777776654321 111 112
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccc
Q 017743 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345 (366)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 345 (366)
|....-.|-++ -+=++.++++|...|+.||..+-..++++|++-+
T Consensus 128 fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 128 FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 22222222222 2236677788888888888887777777777654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.074 Score=45.72 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF----ITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 188 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
+.+...++.+..+|.+.|++++|...|++.++.+ |+. .+|..+..+|...|+.++|...++...+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467789999999999999999999999998874 553 46999999999999999999999999885
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.5 Score=39.77 Aligned_cols=295 Identities=13% Similarity=0.040 Sum_probs=180.9
Q ss_pred HHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHH--
Q 017743 13 IYSKLIAVMG--KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT-- 88 (366)
Q Consensus 13 ~~~~li~~~~--~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-- 88 (366)
-|..|-.++. -.|+-..|.++-.+-.+. +.-|......++.+-... -.|+.+.|.+-|+.|.+ .|....
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal--~eG~~~~Ar~kfeAMl~----dPEtRllG 156 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAAL--LEGDYEDARKKFEAMLD----DPETRLLG 156 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHH--hcCchHHHHHHHHHHhc----ChHHHHHh
Confidence 3555555554 356777777776654321 234555555565543322 45778999999999986 343332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHH--HHHHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITF--NLLIDS 165 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~l~~~ 165 (366)
...|.-..-+.|..+.|.++-+..-..- +.-.-.....+...+..|+|+.|+++++.-.+.. +.++..-- ..|+.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 3334444456788888888888776543 2234567788889999999999999998765543 23333221 222222
Q ss_pred H---hccCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 017743 166 Y---GKRQAFDKMEQVFKSLMHSKEKPTLP-TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 166 ~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (366)
- .-.-+...|...-.+..+ ..||.. .-.....++.+.|+..++-.+++.+-+.. |.+.++...+ ..+.|+
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gd 309 (531)
T COG3898 236 KAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGD 309 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCC
Confidence 1 113345566665555544 445432 23344567888999999999999998874 4444433332 234554
Q ss_pred HHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh-hchHHHHHHH
Q 017743 242 VSRAREIFDELSKL-GKDM-KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKL 318 (366)
Q Consensus 242 ~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~ 318 (366)
.+..-+++..+. .++| +..+...+..+....|++..|..--+.... ..|....|..|.+.-.. .|+-.++..+
T Consensus 310 --ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 310 --TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred --cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHH
Confidence 232223332211 1122 566677778888888898888777666655 36777888887776544 4888888888
Q ss_pred HHHHHhC
Q 017743 319 LKRMEQN 325 (366)
Q Consensus 319 ~~~m~~~ 325 (366)
+.+.++.
T Consensus 386 lAqav~A 392 (531)
T COG3898 386 LAQAVKA 392 (531)
T ss_pred HHHHhcC
Confidence 8887765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.98 Score=41.40 Aligned_cols=109 Identities=12% Similarity=0.026 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
+.+--+.-+...|+..+|.++-++.. -||...|..-+.+++..+++++-+++-+... .+.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444555667788888877776665 6788888888888888888877665543322 2455777888888
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHH
Q 017743 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (366)
+.|+.++|.+++.+... .. -...+|.+.|++.+|.++--
T Consensus 756 ~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 99999998888876432 11 45677888888888776543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.14 Score=43.05 Aligned_cols=62 Identities=16% Similarity=0.056 Sum_probs=32.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
++..+.-++.+.+++..|++..+.....+.. |....-.=..++...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3444455555555555555555555554432 4444444455555555555555555555553
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.3 Score=42.87 Aligned_cols=158 Identities=11% Similarity=0.083 Sum_probs=95.5
Q ss_pred HHHHhcCCHHHHHHHHH--HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 017743 94 RACAQARNVDQVNALFK--ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (366)
....-.++++.+.++.. ++.. .+ +..-.+.++..+.+.|..+.|+++...-. .-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 34556778888776664 1111 11 24457778888888888888887754321 12344566788
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 017743 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 251 (366)
++.|.++.++. ++...|..|.....+.|+++-|++.|++... +..|+-.|...|+.+.-.++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 88887765433 4677888888888888888888888876542 45566666677887777777766
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
....|- ++....++.-.|+.++..+++.+.
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666541 455556666677877777776553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.25 Score=35.34 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=38.3
Q ss_pred hccCcHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 237 GYCDNVSRAREIFDELSKLGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
.+.|++++|.+.|+.+...-+ ......-..++.+|.+.+++++|...+++.++..+.....-|...+.+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 345666666666666665421 112344455666666666666666666666655433223334444444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.06 E-value=1 Score=40.24 Aligned_cols=161 Identities=12% Similarity=0.025 Sum_probs=107.2
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHh----cCcHhHHHHHHHHHHhCCCCCCHHHH
Q 017743 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL------PTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
..++....=.||-+.+++.+.+..+.+-.-.+ -.|..++..++. ....+.|.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 44555666778999999988887664221121 234444444433 45678899999999876 5676555
Q ss_pred HHH-HHHhhccCcHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 017743 230 ECI-ITMYGYCDNVSRAREIFDELSKLG---KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305 (366)
Q Consensus 230 ~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 305 (366)
... .+.+...|++++|.+.|+...... .+.....+--+.-++.-.++|++|.+.|..+.+.. ..+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 433 355667899999999999765421 12223344556667788899999999999999865 3456666665555
Q ss_pred H-HhhchH-------HHHHHHHHHHH
Q 017743 306 Y-TKANMK-------ELVQKLLKRME 323 (366)
Q Consensus 306 ~-~~~~~~-------~~a~~~~~~m~ 323 (366)
| ...|+. ++|.++|.+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 4 446666 88888888764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.92 Score=39.06 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHH----HHhh---ccCcHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH--HHh
Q 017743 207 QGKAEYVFQKMTAMKYTPSFITYECII----TMYG---YCDNVSRAREIFDELSKLGKDMKV----STLNAMLEA--YCM 273 (366)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~---~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~--~~~ 273 (366)
-++|..+++.+.+.. +-|...-+.+. .+|. ....+.+-..+-+.+.+.|+.|-. ..-|.|..+ +..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 667777777776542 22332222222 2222 223445555555666677776532 333434332 455
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHH
Q 017743 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 335 (366)
.|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..++.
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~d 529 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRD 529 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHH
Confidence 7888888765555544 679999999999999999999999999887 455555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.38 Score=40.59 Aligned_cols=125 Identities=11% Similarity=-0.001 Sum_probs=76.4
Q ss_pred HHHHhccCChhHHHHHHHHHHhc-----CCC---------CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHS-----KEK---------PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 228 (366)
.+.|.+.|++..|..-|++.... +.. .-..++..+.-++.+.+++..|+..-.+.+..+ +++...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 45677778888887777765432 011 112345666667777777877777777777765 556666
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHhhh
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENSHN 289 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 289 (366)
.---..++...|+++.|+..|+.+.+..+. |...-+.|+.+-.+..+..+. .++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666667777777888888888877776443 444444455444443333322 445555543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.52 Score=41.06 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=27.5
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 232 IITMYGYCDNVSRAREIFDELSKLGKD-MKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 232 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
+..++-+.|+.++|.+.++++.+.... -+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444444555555555555555443211 12334445555555555555555555554
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.26 Score=39.33 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTP-SFITYECII 233 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~ 233 (366)
.|+.-+.. .+.|++..|..-|...++..+. -....+..|..++...|++++|..+|..+.+.- -.| -+..+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 3556677777777777765321 123345557777777777777777777776542 111 235666666
Q ss_pred HHhhccCcHHHHHHHHHHHHhCC
Q 017743 234 TMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
.+..+.|+.++|..+|+.+.+.-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 67777777777777777777653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.4 Score=39.35 Aligned_cols=83 Identities=12% Similarity=0.065 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCChhHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCcHhHHH
Q 017743 136 MIKEMESVLSRMKSNQCKPDIITFNL-LIDSYGKRQAFDKMEQVFKSLMHSKE---KPTLPTFNSMIINYGKARLQGKAE 211 (366)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~ 211 (366)
..+.|.+++..+.+. -|+...|.. -.+.+...|++++|++.|+....... +.....+--+...+.-..++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 444555555555544 233333322 22334445555555555554432100 111222233334444455555555
Q ss_pred HHHHHHHhC
Q 017743 212 YVFQKMTAM 220 (366)
Q Consensus 212 ~~~~~~~~~ 220 (366)
..|..+.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.5 Score=34.13 Aligned_cols=41 Identities=5% Similarity=0.116 Sum_probs=18.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 133 (366)
++..+...+.+.....+++.+...+ ..+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3444444444555555555544443 2344444445555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.70 E-value=1 Score=37.35 Aligned_cols=129 Identities=14% Similarity=0.263 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCC-
Q 017743 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGK--NG----MIKEMESVLSRMKSNQC---KPDIITFNLLIDSYGKRQA- 171 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 171 (366)
+++...+++.+.+.|+.-+..+|-+..-.... .. ....+..+++.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777666555543333222 22 23456777777776532 2333444444332 2222
Q ss_pred ---hhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCc--HhHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 172 ---FDKMEQVFKSLMHSKEKPT--LPTFNSMIINYGKARL--QGKAEYVFQKMTAMKYTPSFITYECI 232 (366)
Q Consensus 172 ---~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (366)
.+.++.+|+.+.+.|...+ ....+.++..+..... ...+.++++.+.+.++++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2445555666655554432 2222223322222111 23555666666666665555554443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.55 Score=37.51 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=43.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CC-CHHHHHHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV-TP-DSSTYKLLY 303 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~ 303 (366)
.|+.-+..+ +.|++..|...|....+..+. .....+-.|..++...|++++|..+|..+.+.-. .| -+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444333 344455555555555443221 1122233355555555555555555555443210 01 124444444
Q ss_pred HHHHhhchHHHHHHHHHHHHh
Q 017743 304 KAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~ 324 (366)
....+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 555555555555555555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.47 Score=33.30 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=62.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 017743 97 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 176 (366)
.-.|.+++..++..+...+. +..-+|-++.-....-+-+-..++++.+-+. -|. ..+|+.....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHH
Confidence 34566666666666665542 3444444444444443444444444443221 111 2233344333
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
..+-.+ ..+...+...+..+...|.-+...+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333222 1233444555566666666666666666665433 5555666666666666666666666666666655
Q ss_pred C
Q 017743 257 K 257 (366)
Q Consensus 257 ~ 257 (366)
.
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 3
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.63 Score=38.36 Aligned_cols=154 Identities=6% Similarity=-0.002 Sum_probs=101.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCcH
Q 017743 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP----TFNSMIINYGKARLQ 207 (366)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~ 207 (366)
--.|++.+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... -.++.. .-.....++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467777777788888776 4557777777778888888888888888887654 223332 223334455677888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHH
Q 017743 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD---MKVSTLNAMLEAYCMNGLPTEADLLF 284 (366)
Q Consensus 208 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~ 284 (366)
++|++.-++..+.+ +.|.-.-.++...+.-.|+..++.++...-...--. .-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88888888887766 556666667777777788888888776654432111 01122333344556668888888888
Q ss_pred HHhh
Q 017743 285 ENSH 288 (366)
Q Consensus 285 ~~~~ 288 (366)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.067 Score=29.56 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+..+...|...|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444444555555555555555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.7 Score=38.11 Aligned_cols=152 Identities=10% Similarity=0.019 Sum_probs=104.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccCCh
Q 017743 97 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF----NLLIDSYGKRQAF 172 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~ 172 (366)
-..|+..+|-..++++++. .|.|..++...=.+|...|+.+.-...++++... ..++...| ..+.-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467888888888888875 4567777777778888899988888888887654 23344333 3334455678999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC---CCHHHHHHHHHHhhccCcHHHHHHHH
Q 017743 173 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVSRAREIF 249 (366)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 249 (366)
++|++.-++..+.+ +.|.-.-.+....+...|++.++.++..+-...=.. .-...|-...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988887753 335556666777777888999988877654432101 11223444444566678899999998
Q ss_pred HH
Q 017743 250 DE 251 (366)
Q Consensus 250 ~~ 251 (366)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 76
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.3 Score=37.09 Aligned_cols=232 Identities=11% Similarity=0.017 Sum_probs=128.9
Q ss_pred HhcCChhHHHHHHHHHHhcC--CCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc
Q 017743 22 GKKGQTRLAMWLFSEMRNSG--CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 99 (366)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~g--~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (366)
....+.++|+..+.+-..+- ..--..++..+..+.+..+...+.+..|....+...+...-..-...|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777766654420 0011234444445555444333333333333333332110111234556666666666
Q ss_pred CCHHHHHHHHHHHHHc-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHhccC
Q 017743 100 RNVDQVNALFKELHES-ILAPD---IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC-----KPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 100 ~~~~~a~~~~~~~~~~-~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~ 170 (366)
-++.+++.+-..-... |..|. ....-++..++...+.++++++.|+...+.-. .....++..+...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 6677777666554432 22221 12334466677778889999999888754321 123457788888899999
Q ss_pred ChhHHHHHHHHHHhc----CCCCCHHHHH-----HHHHHHHhcCcHhHHHHHHHHHH----hCCCCCC-HHHHHHHHHHh
Q 017743 171 AFDKMEQVFKSLMHS----KEKPTLPTFN-----SMIINYGKARLQGKAEYVFQKMT----AMKYTPS-FITYECIITMY 236 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~----~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~-~~~~~~l~~~~ 236 (366)
|+++|.-+..+..+. ++..-..-|. .+.-++...|....|.+.-++.. ..|-.+. ......+...|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999887666554332 2221111222 33445666777777776665543 3343332 34556777888
Q ss_pred hccCcHHHHHHHHHHHH
Q 017743 237 GYCDNVSRAREIFDELS 253 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~ 253 (366)
-..|+.+.|+.-|+...
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 88999999888877643
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.32 Score=39.40 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-----CCCCCCHHHHHH
Q 017743 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN-----MGVTPDSSTYKL 301 (366)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~ 301 (366)
.++..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34555666666666666666666666655433 556666666666666666666666665543 355555554443
Q ss_pred HH
Q 017743 302 LY 303 (366)
Q Consensus 302 l~ 303 (366)
..
T Consensus 233 y~ 234 (280)
T COG3629 233 YE 234 (280)
T ss_pred HH
Confidence 33
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=2 Score=38.86 Aligned_cols=217 Identities=9% Similarity=0.059 Sum_probs=117.3
Q ss_pred HHHHHHHHhcCCh--hHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC-HHHHHH
Q 017743 15 SKLIAVMGKKGQT--RLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN-IVTYNI 91 (366)
Q Consensus 15 ~~li~~~~~~~~~--~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 91 (366)
+..=++|.+.++. -+.+.-+++++++|-.|+....... ++ -.|.+.+|-++|.+--. ... ...|+.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~---~A----y~gKF~EAAklFk~~G~----enRAlEmyTD 670 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADV---FA----YQGKFHEAAKLFKRSGH----ENRALEMYTD 670 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHH---HH----hhhhHHHHHHHHHHcCc----hhhHHHHHHH
Confidence 3334455554443 2333445567777777776544333 33 44568888888877432 111 111211
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH------HHHCCC---CCCHH
Q 017743 92 -----LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR------MKSNQC---KPDII 157 (366)
Q Consensus 92 -----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~ 157 (366)
..+-+...|..++-..+.++--+. ..+..--.+....+...|+.++|..+.-+ +.+.+. ..+..
T Consensus 671 lRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 671 LRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 122333444443333333221111 11111112334455566777766655321 111111 12445
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHH----------
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI---------- 227 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------- 227 (366)
+...+..-+.+...+..|-++|..|-+ ...+++.....+++.+|..+-+...+. .||..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 555555566677888899999988843 235677788899999999888776654 33321
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 228 -TYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 228 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
-+.-.-.+|.+.|+-.+|.++++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1233345777788888888888877653
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.065 Score=29.60 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=18.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 265 (366)
++..+..+|...|++++|.++|+++.+..+. |...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHH
Confidence 3444555555555555555555555554433 344433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.3 Score=38.99 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 146 (366)
.+....-.+..++.+.|.-++|.+.|-+. +. | ...+..|...++|.+|.++-+.
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666777777777776665332 11 1 1234555666666666665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.35 Score=39.19 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK-----LGKDMKVSTLNA 266 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 266 (366)
.++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 344445555555555555555555555443 34455555555555555555555555555443 344554444443
Q ss_pred H
Q 017743 267 M 267 (366)
Q Consensus 267 l 267 (366)
.
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.69 Score=32.39 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=53.4
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHH---HHHHHHHHhhccCc
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI---TYECIITMYGYCDN 241 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 241 (366)
++...|+.+.|++.|.+.+.. .+.....||.-..++.-.|+.++|.+=+++..+..-.-+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345567777777777766654 33356667777777777777777776666665542122222 22222334555677
Q ss_pred HHHHHHHHHHHHhCC
Q 017743 242 VSRAREIFDELSKLG 256 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~ 256 (366)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777666655
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.2 Score=35.08 Aligned_cols=207 Identities=11% Similarity=0.114 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
...|.....+|....++++|...+.+..+. .+.+...|++ ....+.|.-+.+++... +--...|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-----------AKayEqaamLake~~kl---sEvvdl~e 95 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-----------AKAYEQAAMLAKELSKL---SEVVDLYE 95 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-----------HHHHHHHHHHHHHHHHh---HHHHHHHH
Confidence 445777777788888888888877766531 1222222221 22355666666666541 22234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHH
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN---Q--CKPDIITFNLLIDS 165 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~ 165 (366)
.....|..+|.++.|-..+++.-+. ...-++++|+++|.+.... + .+.-...+..+-..
T Consensus 96 KAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 6777788888887777776665432 1223444555555443211 0 00011222333344
Q ss_pred HhccCChhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC---CCCCHHHHHHHHHHhh
Q 017743 166 YGKRQAFDKMEQVFKSLMHS----KEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYG 237 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~ 237 (366)
+.+...+++|-..+.+-... .-.++ -..|...|-.+.-..++..|...++.-.+.+ -+-+..+...|+.+|-
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 55555555554443332111 01111 1234444455555567777777776643322 1223456666666653
Q ss_pred ccCcHHHHHHHH
Q 017743 238 YCDNVSRAREIF 249 (366)
Q Consensus 238 ~~~~~~~a~~~~ 249 (366)
.|+.+++..++
T Consensus 240 -~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 -EGDIEEIKKVL 250 (308)
T ss_pred -cCCHHHHHHHH
Confidence 56666655544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.91 Score=33.71 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=11.1
Q ss_pred HHHHhcCCCCChhhHHHHHHHHh
Q 017743 35 SEMRNSGCRPDPSVYNALITAHL 57 (366)
Q Consensus 35 ~~~~~~g~~p~~~~~~~ll~~~~ 57 (366)
..+.+.++.|+...+..++..+.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi 40 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLI 40 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHH
Confidence 33344444555555555555554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.83 Score=32.98 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=20.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 203 (366)
.++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444555555555555544432 344455555555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=2.1 Score=37.36 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=99.0
Q ss_pred ChhHHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHh---------cCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 017743 171 AFDKMEQVFKSLMHS-KEKPT-LPTFNSMIINYGK---------ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 239 (366)
+.+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++-++..+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456788889988722 13443 4455555444432 234556777778888876 66788888888877888
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhhchHHHHH
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS---STYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~ 316 (366)
++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+. .|.. ......++.|...+ .++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 8899999999999988655 5666666666777789999999999997765 3432 23333444555544 55566
Q ss_pred HHHHH
Q 017743 317 KLLKR 321 (366)
Q Consensus 317 ~~~~~ 321 (366)
++|-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 66543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.86 Score=31.95 Aligned_cols=92 Identities=17% Similarity=0.034 Sum_probs=61.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccC
Q 017743 94 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT---FNLLIDSYGKRQ 170 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~ 170 (366)
-+.+..|+++.|++.|.+.+..- +-....||.-..++.-.|+.++|++=+++..+..-..+... |..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34667788888888888877652 34677788888888888888888887777765422222222 222334466677
Q ss_pred ChhHHHHHHHHHHhcC
Q 017743 171 AFDKMEQVFKSLMHSK 186 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~ 186 (366)
+-+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7788877777766654
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.7 Score=35.28 Aligned_cols=120 Identities=9% Similarity=0.086 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-AR-NVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGMIK 138 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~ 138 (366)
....+.+|+++|+.......+-.|..+...+++.... .+ ....-.++.+-+... |-.++..+...++..++..+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 3445788888888544323345677777777777766 22 233333344444332 34567777778888888888888
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 017743 139 EMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181 (366)
Q Consensus 139 ~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 181 (366)
+..++++..... +...|...|..+|......|+..-..++.++
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888888876655 4556777888888888888887766655543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.96 Score=36.95 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH
Q 017743 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLG---KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299 (366)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 299 (366)
+....+...++.......+++.+...+-.+.... ..|+...+ ..++.+. .-++++++.++..=+..|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 3344445555555555566666666555554321 11111111 1222222 23566777777776777777777777
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 300 KLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+.+++.+.+.+++.+|..+.-.|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777666665543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.9 Score=31.94 Aligned_cols=140 Identities=11% Similarity=0.099 Sum_probs=60.6
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 017743 21 MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 100 (366)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (366)
+.-.|.+++..++..+...+ .+..-+|=+|..... .-+-+-..+.++.+-+...+.+- .-.-.++.+|+..|
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiD----aa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n 83 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIID----AADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRN 83 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHH----H--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecch----hhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhc
Confidence 44568888889998888764 234444444443331 11133334444444332111110 00112222222222
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 017743 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180 (366)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 180 (366)
. +...+...+..+...|+-++-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.
T Consensus 84 ~------------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 84 K------------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp ---------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred c------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 1 2222333445555555656655666555432 24455555556666666666666666666
Q ss_pred HHHhcCC
Q 017743 181 SLMHSKE 187 (366)
Q Consensus 181 ~~~~~~~ 187 (366)
+.-+.|+
T Consensus 145 ~ACekG~ 151 (161)
T PF09205_consen 145 EACEKGL 151 (161)
T ss_dssp HHHHTT-
T ss_pred HHHHhch
Confidence 6555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.82 E-value=3.3 Score=38.24 Aligned_cols=303 Identities=11% Similarity=0.045 Sum_probs=162.7
Q ss_pred cccCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCC
Q 017743 6 WYIADTGIYS-----KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME 80 (366)
Q Consensus 6 ~~~~~~~~~~-----~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (366)
|++.+..-|. .+++-+...+.+..|+++-..+...-..- ...|.....-+.+..+.. +.+.+..+-+++.. .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~-~ 503 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSA-K 503 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCcc-chHHHHHHHHHhcc-c
Confidence 4444444443 35677778889999999888775321111 445555544444332211 12222233333332 1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 017743 81 RCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL----APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ----- 151 (366)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 151 (366)
. -....|..+.+-....|+++.|..+++.=...+. -.+..-+...+.-..+.|+.+-...++-.+.+.-
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 1 3345677888888889999999888764322221 1123334555666777888887777776665431
Q ss_pred ------CCCCHHHHHHHHH--------HHhccCChhHHHHHH--HHHHhc-CCCCCHHHHHHHHHHHHhcCc--------
Q 017743 152 ------CKPDIITFNLLID--------SYGKRQAFDKMEQVF--KSLMHS-KEKPTLPTFNSMIINYGKARL-------- 206 (366)
Q Consensus 152 ------~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~li~~~~~~~~-------- 206 (366)
.+.....|.-++. .+...++-..+...| +..... -+.+-..........+.+...
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 1111112222111 011111111111111 110000 011111122223334443332
Q ss_pred --HhHHHHHHHHHHh-CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 017743 207 --QGKAEYVFQKMTA-MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283 (366)
Q Consensus 207 --~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 283 (366)
...-..+.+.+.. .+......+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 1112222222321 2323334455555666677888889988766554 35888898899999999999998887
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 284 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
-+..+. +.-|.-++.+|.+.|+.++|.+++-+..
T Consensus 738 Akskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 738 AKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 776542 3447778899999999999998877653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.4 Score=41.02 Aligned_cols=119 Identities=13% Similarity=0.169 Sum_probs=68.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (366)
.-+..+++..-++-|+.+-.. . ..|..+...++..|+......|++++|...+-+... -+.|. .++.-
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~k 406 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---Q--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---c--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChH-----HHHHH
Confidence 344555555556666555332 2 234445555555555444455667777766655542 12332 24455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 017743 96 CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 147 (366)
|....++..-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 56666666666777777777654 5556667777777777766655555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.5 Score=40.85 Aligned_cols=168 Identities=14% Similarity=0.120 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNI--VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 139 (366)
+...+..|+.+-+.-. ..++. .......+.+.+.|++++|...|-+.+.. +.| ..++.-|.....+.+
T Consensus 346 kK~ly~~Ai~LAk~~~----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQH----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKN 415 (933)
T ss_pred HhhhHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHH
Confidence 5555778887766533 22322 23334455567889999999998776643 233 235666777778888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 017743 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 218 (366)
-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+..- .|.. -| ....+..+.+.+-.++|..+-.+..
T Consensus 416 Lt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 416 LTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhc
Confidence 88999999999876 67777889999999999998887776654 2221 12 3445666666777777766554443
Q ss_pred hCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 017743 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252 (366)
Q Consensus 219 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (366)
. .......++. ..+++++|.+.+..+
T Consensus 491 ~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 K-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred c-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 2 2333344433 457778887777654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.51 E-value=5.2 Score=39.14 Aligned_cols=81 Identities=11% Similarity=-0.022 Sum_probs=40.9
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFI--TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
.+.+|...|++.+|..+..++... -+.. +-..|+.-+...++.-+|-++..+.... ....+..+++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence 345555556666665555554421 1111 1244555555666666666665554432 12233445555
Q ss_pred CChhHHHHHHHHhh
Q 017743 275 GLPTEADLLFENSH 288 (366)
Q Consensus 275 g~~~~a~~~~~~~~ 288 (366)
..+++|.++.....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 56666666655443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.49 E-value=2.9 Score=36.20 Aligned_cols=141 Identities=10% Similarity=0.110 Sum_probs=86.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 017743 21 MGKKGQTRLAMWLFSEMRNSGCR-PD----PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95 (366)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~g~~-p~----~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (366)
+-+.+++.+|.++|.++.+.--. |. ....+.+++++. .++.+.....+....+..|-.+-...|..+ .
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-----l~nld~Me~~l~~l~~~~~~s~~l~LF~~L--~ 88 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-----LNNLDLMEKQLMELRQQFGKSAYLPLFKAL--V 88 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-----HhhHHHHHHHHHHHHHhcCCchHHHHHHHH--H
Confidence 44788999999999998654211 11 223456677774 233556666666665533222222222222 3
Q ss_pred HHhcCCHHHHHHHHHHHHHc--CCCC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHH
Q 017743 96 CAQARNVDQVNALFKELHES--ILAP------------DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ----CKPDII 157 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 157 (366)
+.+.+.++.|.+.+...... +..| |-.-=+..+.++...|++.++..+++++...- ...+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 55788999999988877654 2221 11112456677888999999999988886543 346888
Q ss_pred HHHHHHHHHhc
Q 017743 158 TFNLLIDSYGK 168 (366)
Q Consensus 158 ~~~~l~~~~~~ 168 (366)
+|+.++-.+++
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 88886666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.40 E-value=2.3 Score=34.61 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=20.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 017743 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (366)
..|++.+|..+|......... +...--.+..+|...|+.+.|..++..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 344444444444444433211 2333333444444444444444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.5 Score=32.22 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=28.4
Q ss_pred HhcCcHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 202 GKARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
.+.++.+++..++.-+.-... .|...++... .+...|++.+|..+|+.+....
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC
Confidence 345666677777666665421 1112233322 3345677777777777765543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.12 Score=26.97 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 017743 13 IYSKLIAVMGKKGQTRLAMWLFSEMR 38 (366)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~ 38 (366)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999954
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.69 Score=30.39 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=37.4
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC-CCCCChhHHHHHHHH
Q 017743 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVPNKRFFLEALET 340 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~ 340 (366)
.-++.+-++.+...++.|++......+++|.+.+++..|.++++-.+.+ |- +...|..+++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 3345555666666666777777777777777777777777777666532 22 33345554443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.6 Score=34.76 Aligned_cols=223 Identities=14% Similarity=0.086 Sum_probs=116.3
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCChh-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHC--------CCCCC-----H
Q 017743 98 QARNVDQVNALFKELHESI--LAPDIY-----TYNGVMDAYGKNG-MIKEMESVLSRMKSN--------QCKPD-----I 156 (366)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~--~~~~~~-----~~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~-----~ 156 (366)
+.|+.+.|..++.++.... ..|+.. .+..+.......+ +++.|...+++..+. ...|+ .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4566666666666655432 112211 1122222333444 776666666554322 12233 3
Q ss_pred HHHHHHHHHHhccCChh---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 157 ITFNLLIDSYGKRQAFD---KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 233 (366)
.++..++.+|...+..+ +|..+++.+... .+..+..+..-+..+.+.++.+.+.+.+.+|...- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45667778888777655 455566666443 22235556566777777899999999999999763 21233444444
Q ss_pred HHh---hccCcHHHHHHHHHHHHhCCCCCCHH-HHHH-HHHHH---HhcCC------hhHHHHHHHHhhh-CCCCCCHHH
Q 017743 234 TMY---GYCDNVSRAREIFDELSKLGKDMKVS-TLNA-MLEAY---CMNGL------PTEADLLFENSHN-MGVTPDSST 298 (366)
Q Consensus 234 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-li~~~---~~~g~------~~~a~~~~~~~~~-~~~~p~~~~ 298 (366)
..+ ... ....+...++.+....+.|... .... ++... .+.++ .+....++....+ .+.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 332 3456666776666554555543 1111 11111 11111 3334444443222 122333333
Q ss_pred HH---HH----HHHHHhhchHHHHHHHHHHHH
Q 017743 299 YK---LL----YKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 299 ~~---~l----~~~~~~~~~~~~a~~~~~~m~ 323 (366)
-. ++ ...+.+.++++.|..+|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 22 234667899999999988544
|
It is also involved in sporulation []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.28 E-value=3 Score=35.43 Aligned_cols=291 Identities=10% Similarity=0.046 Sum_probs=166.9
Q ss_pred ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH--HHhcCCHH
Q 017743 26 QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA--CAQARNVD 103 (366)
Q Consensus 26 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~ 103 (366)
....+...|..-+. ..-|..|-.++.-.+ .|+-..|.++-.+..+ -+..|......++.+ -.-.|+.+
T Consensus 68 sP~t~~Ryfr~rKR------drgyqALStGliAag--AGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~ 137 (531)
T COG3898 68 SPYTARRYFRERKR------DRGYQALSTGLIAAG--AGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYE 137 (531)
T ss_pred CcHHHHHHHHHHHh------hhHHHHHhhhhhhhc--cCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchH
Confidence 34455556655432 223444444444332 2445566666555442 124455555555543 44579999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 017743 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183 (366)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (366)
.|.+-|+.|.... +.-.--...|.-.-.+.|..+.|.++-+.....-.. -...+...+...+..|+|+.|+++.+.-.
T Consensus 138 ~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 138 DARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 9999999998631 111112233333345688999998888887665322 35677888899999999999999998765
Q ss_pred hcC-CCCCHH--HHHHHHHHHHh---cCcHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 184 HSK-EKPTLP--TFNSMIINYGK---ARLQGKAEYVFQKMTAMKYTPSFI-TYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 184 ~~~-~~~~~~--~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
... +.++.. .-..|+.+-.. .-+...|...-.+..+. .|+.. .--.-..++.+.|++.++-.+++.+-+..
T Consensus 216 ~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 216 AAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 543 233332 12223332211 23556666665555543 55533 23344567788999999999999998876
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCC-CHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHH
Q 017743 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM-GVTP-DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334 (366)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 334 (366)
+.|+ .+.. ..+.+.|+. +..-+++.... .++| +......+.++....|++..|..--+...+ ..|....|
T Consensus 294 PHP~--ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~ 365 (531)
T COG3898 294 PHPD--IALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAY 365 (531)
T ss_pred CChH--HHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHH
Confidence 5554 3322 233445543 33223222211 1233 456677778888888888877766555544 44655555
Q ss_pred HHHH
Q 017743 335 LEAL 338 (366)
Q Consensus 335 ~~ll 338 (366)
..+-
T Consensus 366 lLlA 369 (531)
T COG3898 366 LLLA 369 (531)
T ss_pred HHHH
Confidence 5443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.24 E-value=3.6 Score=36.22 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECII 233 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 233 (366)
..+-..+..++.+.|+.++|++.++++.+.... ........++.++...+.+.++..++.+..+...+.+ ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 333345666677788888888888888764332 2344667788888888888888888888765443333 34555544
|
The molecular function of this protein is uncertain. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=2.3 Score=33.84 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 267 MLEAYCMNGLPTEADLLFENSHNMGVTPD---SSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
+.+.|.+.|.+..|..-+++|.+. .+-. ...+..+..+|...|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 455667777777777777777665 2211 23455566677777777777666554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.6 Score=31.40 Aligned_cols=84 Identities=10% Similarity=0.001 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 017743 46 PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124 (366)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (366)
...|..-..++ ..|++++|.+.|+.+.......+ ...+.-.++.+|.+.+++++|...+++.++........-|
T Consensus 11 ~~ly~~a~~~l-----~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 11 QELYQEAQEAL-----QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHHH-----HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 34444444444 55567777777777765322211 2345566777788888888888888888776543334556
Q ss_pred HHHHHHHHhc
Q 017743 125 NGVMDAYGKN 134 (366)
Q Consensus 125 ~~ll~~~~~~ 134 (366)
...+.+++..
T Consensus 86 a~Y~~gL~~~ 95 (142)
T PF13512_consen 86 AYYMRGLSYY 95 (142)
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=2.5 Score=33.65 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 017743 62 KAKALAKALGYFQKMKGMERCKP-NIVTYNILLRACAQARNVDQVNALFKELHES 115 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (366)
..|++++|.+.|+.+.......| ...+.-.++-++.+.++++.|...+++..+.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34445555555555553321111 2233344444555555555555555555544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.00 E-value=2.4 Score=33.43 Aligned_cols=205 Identities=11% Similarity=0.087 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
..|.....+|....++++|...+.+..+. .+-+..-|. . ....+.|.-+.+++.+. ..-...|+.....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 45667777888888999888877776542 222222222 1 22344455555555443 11233455556667
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC---C--CCCCHHHHHHHHHHhhccCc
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM---K--YTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~ 241 (366)
..+|.++.|-..+++.-+. ...-+++.|++++++.... + ..--...+..+-+.+.+..+
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777666666554321 1223344444444443211 1 00112234445555666666
Q ss_pred HHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHhhchHH
Q 017743 242 VSRAREIFDELSKL----GKDMK-VSTLNAMLEAYCMNGLPTEADLLFENSHNMG---VTPDSSTYKLLYKAYTKANMKE 313 (366)
Q Consensus 242 ~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~ 313 (366)
+++|-..+..-... .--++ -..|-..|-.+....++..|.+.++...+.+ -+-+..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 66665544332211 00111 2334455555666677888888877643321 1234567777777764 36666
Q ss_pred HHHHH
Q 017743 314 LVQKL 318 (366)
Q Consensus 314 ~a~~~ 318 (366)
++.++
T Consensus 245 ~~~kv 249 (308)
T KOG1585|consen 245 EIKKV 249 (308)
T ss_pred HHHHH
Confidence 55544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.85 Score=34.51 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---CCCCCHHHHHH
Q 017743 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKL 301 (366)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~ 301 (366)
..+..+...|++.|+.+.|.+.|.++.+....+ -...+-.+|......+++..+.....+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456677777777777777777777776653332 2344566777777777777777766665432 11112221111
Q ss_pred HHH--HHHhhchHHHHHHHHHHHH
Q 017743 302 LYK--AYTKANMKELVQKLLKRME 323 (366)
Q Consensus 302 l~~--~~~~~~~~~~a~~~~~~m~ 323 (366)
... ++...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 112 2345677777777766554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.91 E-value=3.9 Score=35.47 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=78.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSK-EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF-ITYECIITM 235 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 235 (366)
+|...+....+..-.+.|..+|-++.+.+ ..+++..+++++..++ .|+..-|..+|+.-... -||. .-....+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 34445555555666666777777766665 4455666666666554 45666666666654443 2332 222444455
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 304 (366)
+...++-..|..+|+..... +.. -...|..+|..-..-|+...+..+-+.|... .|...+...+..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~S 543 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTS 543 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHH
Confidence 55666666677777644332 111 1456666666666666666666666666552 444444443333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.85 E-value=3 Score=33.96 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=21.9
Q ss_pred hcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
..|++.+|..+|+...... +-+....-.+..+|...|+.+.|..++..+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3444444444444444332 1122333444444444555555555544443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.79 E-value=2.1 Score=31.86 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH-
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII-TFNLL- 162 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l- 162 (366)
...|...++. .+.+..++|+.-|..+.+.|...- .-..-.......+.|+...|...|+++-.....|-+. -...|
T Consensus 59 gd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 3444444432 345566666666666666543210 0111112233455666666666666665443333222 11111
Q ss_pred -HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 163 -IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 163 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
...+..+|.++......+-+-..+.+.-...-..|.-+-.+.|++..|.++|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 122445566665555555544333333333344444455556666666666665554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.76 E-value=2.3 Score=32.23 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKS 149 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 149 (366)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677888899999999999999999887643333 34466777888888888888888777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.73 E-value=2 Score=31.54 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=8.9
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 017743 96 CAQARNVDQVNALFKELHE 114 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~ 114 (366)
+...|++.+|.++|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3344455555555544433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.25 Score=25.78 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELH 113 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~ 113 (366)
|+.|...|.+.|++++|.++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666633
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.13 Score=26.56 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHHhcCChhHH
Q 017743 260 KVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a 280 (366)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.08 E-value=8.2 Score=36.62 Aligned_cols=226 Identities=12% Similarity=0.065 Sum_probs=123.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChh-------hHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 017743 96 CAQARNVDQVNALFKELHESILAPDIY-------TYNGVMD-AYGKNGMIKEMESVLSRMKSN----QCKPDIITFNLLI 163 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 163 (366)
.....++++|..++.++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 445788999999998887653333222 2333322 234578999998888876553 2334566777778
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCCHHH---HHHHH--HHHHhcCcHhHH--HHHHHHHHhC---CCC---CCHHHHH
Q 017743 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPT---FNSMI--INYGKARLQGKA--EYVFQKMTAM---KYT---PSFITYE 230 (366)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li--~~~~~~~~~~~a--~~~~~~~~~~---~~~---~~~~~~~ 230 (366)
.+..-.|++++|..+.....+..-.-+... |..+. ..+...|+...+ ...+...... ..+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999988877765422223332 32222 224455633332 2223322211 101 1223445
Q ss_pred HHHHHhhcc-CcHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHhhhCCC----CCCHHHHHHHH
Q 017743 231 CIITMYGYC-DNVSRAREIFDELSKLGKDMKVSTLN--AMLEAYCMNGLPTEADLLFENSHNMGV----TPDSSTYKLLY 303 (366)
Q Consensus 231 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~l~ 303 (366)
.+..++.+. +...++..-+.-.......|-...+. .|+......|++++|...+.++..... .++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555441 12223333333333333333222222 677888899999999988888765432 23333323333
Q ss_pred HH--HHhhchHHHHHHHHHH
Q 017743 304 KA--YTKANMKELVQKLLKR 321 (366)
Q Consensus 304 ~~--~~~~~~~~~a~~~~~~ 321 (366)
+. -...|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 32 2456788777776665
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.74 E-value=2 Score=28.65 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 279 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
+..+-++.+...++.|++......+++|.+.+++..|.++++-.+.+- .+....|..+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHHH
Confidence 556667777777788888888888888888888888888888777541 12233666666544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.73 E-value=3.9 Score=31.96 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=38.7
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhhchHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKEL 314 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 314 (366)
+...++.+.+...+..............+..+...+...++++.+...+....... |+ ...+..+...+...+..+.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHH
Confidence 33444555555555554443221123444445555555555555555555554432 22 2233333333334444555
Q ss_pred HHHHHHHHHh
Q 017743 315 VQKLLKRMEQ 324 (366)
Q Consensus 315 a~~~~~~m~~ 324 (366)
+...+.+..+
T Consensus 255 ~~~~~~~~~~ 264 (291)
T COG0457 255 ALEALEKALE 264 (291)
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.60 E-value=6.7 Score=34.37 Aligned_cols=136 Identities=9% Similarity=0.086 Sum_probs=75.3
Q ss_pred hhH--HHHHHHHhhchH-HHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 017743 47 SVY--NALITAHLHTRD-KAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQ---------ARNVDQVNALFKELH 113 (366)
Q Consensus 47 ~~~--~~ll~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 113 (366)
..| ..++.+...... .....+.|+.+|.+......+.|+ ...|..+..++.. .....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 345 556665543111 234578888899988843444554 3344444333221 123445555566666
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 114 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
+.+ +-|..+...+..++...++++.+...|++....+. ....+|......+.-.|+.++|.+.+++..+
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 554 33555665666655666667777777777666531 1334444444445556777777777777555
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.48 E-value=3.6 Score=33.86 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESI---LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (366)
...+...++..-....+++.+...+-++.... ..|+. +-.+.++.+. .-+.++++.++..=.+.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 33344444444444455666666555554321 11111 1122223222 2345566666666666666666666666
Q ss_pred HHHHHhccCChhHHHHHHHHHHhc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHS 185 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~ 185 (366)
+|+.+.+.+++.+|.++.-.|+..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666666666666665555443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.31 E-value=2.3 Score=28.36 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
+..+-+..+....+.|++.+..+.+++|.+.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455555555566666666666666666666666666655543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.25 E-value=3.7 Score=30.60 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHH--HHHHHhcCCH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT-YNGV--MDAYGKNGMI 137 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l--l~~~~~~~~~ 137 (366)
..+..++|+.-|..+.+ .|...- .-..-.+.....+.|+-..|...|+++-.....|-..- ...| .-.+...|.+
T Consensus 70 ~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 70 QENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34457888888888876 333211 12223344556788999999999999876543333321 1111 1235678889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 017743 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189 (366)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 189 (366)
+.+....+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 9888888887766555455556677777889999999999999987643433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.14 E-value=3.8 Score=30.51 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=74.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
.+.++.+.+.+++|+...+..++..+.+.|.+.... .+...++-+|.......+-.+. +....+.++=-+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 345556666677778888888888888877765543 3444444555444443332222 2223333333333322
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
-...+..+++.+...|++-+|.++.+...... ......++.+..+.++...-..+++-..++
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 01135667777778888888888877643321 111244556666666655555555555443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.07 E-value=3.4 Score=29.86 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=11.3
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 017743 96 CAQARNVDQVNALFKELHES 115 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~ 115 (366)
+...|++++|.++|+++.+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 44555666666666555544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.58 Score=23.78 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444444455555555555444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.74 E-value=3.8 Score=29.66 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=22.2
Q ss_pred cCcHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 204 ARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
.++++++..++..|.-... .+...++...+ +...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 4555555555555543310 11122222222 23455555555555555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.59 Score=25.03 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRN 39 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 39 (366)
..+++.+...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45789999999999999999999998764
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.76 Score=23.33 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNS 40 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 40 (366)
.+|..+...+...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57888999999999999999999998875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.76 Score=23.22 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNS 40 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 40 (366)
..|..+...+...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46777888999999999999999998765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.075 Score=38.62 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=25.8
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 017743 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285 (366)
Q Consensus 233 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (366)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544433345555555555555555455554444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.83 Score=23.06 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 299 YKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
|..+...+...|++++|++.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444445555555555555554443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.53 Score=25.95 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=12.4
Q ss_pred HHHHHHhhchHHHHHHHHHHHHhC
Q 017743 302 LYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+.++|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.31 Score=25.08 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=25.4
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHH
Q 017743 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 284 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 316 (366)
|++.++.. +-|...|..+...+...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555554 337899999999999999999986
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.79 E-value=3.9 Score=31.35 Aligned_cols=73 Identities=16% Similarity=0.071 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHhhchHHHHH
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~ 316 (366)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+..|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555554443334444444444444 34556666655555432 22455666666666666666665553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.57 E-value=6.8 Score=30.49 Aligned_cols=223 Identities=12% Similarity=0.044 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 017743 65 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGMIKEMESV 143 (366)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 143 (366)
....+...+...............+......+...+.+..+...+...... ........+......+...+....+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345555555555432100113567777888888889999998888887752 2344556677777778888889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-HHhccCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 144 LSRMKSNQCKPDIITFNLLID-SYGKRQAFDKMEQVFKSLMHSKE--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+......
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 99888764433 222222333 78889999999999999855322 123344444444466788999999999998876
Q ss_pred CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 221 KYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 221 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
. .. ....+..+...+...++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 197 N-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred C-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 33 4677888888888888999999999988876433 2344455555555777789999888887765
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.47 E-value=7 Score=30.43 Aligned_cols=29 Identities=24% Similarity=0.090 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 262 STLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
.+|--+...+...|+.++|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 44555555555556666665555555443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.23 E-value=4.2 Score=31.20 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhcCChh
Q 017743 261 VSTLNAMLEAYCMNGLPT 278 (366)
Q Consensus 261 ~~~~~~li~~~~~~g~~~ 278 (366)
+..+.+|+..+.+.|+++
T Consensus 178 ~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 178 PEILKSLASIYQKLKNYE 195 (203)
T ss_pred HHHHHHHHHHHHHhcchh
Confidence 333333333333333333
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.04 E-value=3.6 Score=31.93 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG--KDMKVSTLNAMLEA 270 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~ 270 (366)
|.+..++.+.+.+...+++...+.-++.+ +.+...-..+++.+|-.|++++|..-++-.-... ..+-...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556777888889999999888777664 4456667788899999999999988777766542 23345566666654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.85 E-value=11 Score=31.84 Aligned_cols=204 Identities=7% Similarity=0.019 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC---HH
Q 017743 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNS--GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN---IV 87 (366)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 87 (366)
+|..+..+.++.|.+++++..--.-.+. ..+-...-+.+.++ +.+...+-.++.+++.+-..-....|..|. -.
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln-lar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN-LARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 4455556666666666654432111110 01112222222222 123333444566666665555544444442 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHH-
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESIL-----APDIYTYNGVMDAYGKNGMIKEMESVLSRMKS----NQCKPDII- 157 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~- 157 (366)
...++..++...+.++++.+.|+...+... .....++..|-..|.+..++++|.-+..+..+ .++. |..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~ 202 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSL 202 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhH
Confidence 344566777778889999999988776421 12345788899999999999998877665533 2222 211
Q ss_pred -----HHHHHHHHHhccCChhHHHHHHHHHHh----cCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 017743 158 -----TFNLLIDSYGKRQAFDKMEQVFKSLMH----SKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 158 -----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 218 (366)
....+.-++...|....|.+.-++..+ .|-.+ -......+.+.|...|+.+.|..-|+...
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 122344556677777777766665533 33322 23345566777888999999887777643
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.70 E-value=1.2 Score=23.70 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHE 114 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (366)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666665543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.72 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 017743 14 YSKLIAVMGKKGQTRLAMWLFSEMRNS 40 (366)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~ 40 (366)
+-.+...+.+.|++++|.+.|+.+.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344667777888888888888888765
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.89 E-value=5.2 Score=27.94 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=27.0
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 280 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..+-++.+...++.|++......+++|.+.+++..|.++|+-+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555666666666666666666666666666665553
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.84 E-value=12 Score=30.64 Aligned_cols=117 Identities=9% Similarity=0.075 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCChhhHHHHH-HHHHhcCCHHHH
Q 017743 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES----ILAPDIYTYNGVM-DAYGKNGMIKEM 140 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll-~~~~~~~~~~~a 140 (366)
+++--+-+++..+..|-..-...+..+...|++.++.+.+.+...+..+. |.+.|......-+ -.|....-.++.
T Consensus 95 i~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~ 174 (412)
T COG5187 95 IEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEES 174 (412)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 33333334444443344445667788888888888888888877665543 4444432222211 223333345677
Q ss_pred HHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 141 ESVLSRMKSNQCKPDII----TFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 141 ~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
++..+.|.+.|...+.. +|..+- +....++.+|-.++...+.
T Consensus 175 lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 175 LEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 77778888777643322 222221 2234556777776666544
|
|
| >PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.25 E-value=2.1 Score=24.11 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=24.5
Q ss_pred HhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 017743 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340 (366)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 340 (366)
.+.|-..++..++++|.+.|+..+...+..+++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 4556666777777778777777777777777654
|
This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length. |
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.87 E-value=15 Score=30.65 Aligned_cols=95 Identities=8% Similarity=0.021 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCH----H
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHE----SILAPDIYTYNGVMDAYG-KNGMIKEMESVLSRMKSNQCKPDI----I 157 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----~ 157 (366)
..+......|++.|+.+.|.+.+.+..+ .|.+.|..-+..-+..+. ...-+.+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455556667777777777666655433 344444444333333222 222233444444445555543332 1
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLM 183 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (366)
+|..+- +....++.+|-.+|-...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 222221 233455666666655543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.74 E-value=6.1 Score=26.15 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
+.+-+..+......|++.+..+.+++|-+.+++..|.++|+.++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444555555555555555555555555554444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=14 Score=32.62 Aligned_cols=84 Identities=14% Similarity=-0.000 Sum_probs=37.3
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
..|.++.+.+.+...... +.....+...++....+.|++++|..+...|....+. +..............|-++++..
T Consensus 335 ~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHH
Confidence 345555555444433322 1112334444555555555555555555555444433 33333333333334444555555
Q ss_pred HHHHHH
Q 017743 318 LLKRME 323 (366)
Q Consensus 318 ~~~~m~ 323 (366)
.|+++.
T Consensus 413 ~wk~~~ 418 (831)
T PRK15180 413 YWKRVL 418 (831)
T ss_pred HHHHHh
Confidence 554443
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=87.29 E-value=9.2 Score=27.70 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHhhch-HHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 017743 295 DSSTYKLLYKAYTKANM-KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 295 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 344 (366)
+...|..++.+.....- .--+..+|+-|.+.++.++...|..+|+++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34455555555544433 233455555555555666666666666666554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.25 E-value=13 Score=33.77 Aligned_cols=152 Identities=13% Similarity=0.058 Sum_probs=91.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 017743 96 CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (366)
..-.|+++.|..++-.+. ....+.+...+.+.|..++|+++- +|.... .....+.|+++.|
T Consensus 596 ~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA 656 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIA 656 (794)
T ss_pred HhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHH
Confidence 334577777766544332 233455666667777777776542 222111 2234466778888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+....+-....+.
T Consensus 657 ~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 657 FDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 7766554 2556688888888888888888877776553 445555666667766555555555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
|.. | .-.-+|...|+++++.+++..-
T Consensus 722 g~~-N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 722 GKN-N-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ccc-c-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 532 2 2334556678888888777654
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=87.04 E-value=14 Score=29.99 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=56.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh----
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY---- 236 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 236 (366)
.=|+++...++|.++....-+--+.-.+........-|-.|.+.+.+..+.++-..-....-.-+...|..++..|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3467788888888887665554333223345556666777888888888887777666542222233466555544
Q ss_pred -hccCcHHHHHHHH
Q 017743 237 -GYCDNVSRAREIF 249 (366)
Q Consensus 237 -~~~~~~~~a~~~~ 249 (366)
.-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 4468888887776
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.97 E-value=5.2 Score=33.39 Aligned_cols=93 Identities=17% Similarity=0.021 Sum_probs=58.3
Q ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 017743 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (366)
.-|.+.|.+++|+..|....... +-+.+++..-..+|.+..++..|..-.......+-. -...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHH
Confidence 45778888888888888777653 237777777778888888888777666665554211 1233444444444455566
Q ss_pred HHHHHHHHhhhCCCCCC
Q 017743 279 EADLLFENSHNMGVTPD 295 (366)
Q Consensus 279 ~a~~~~~~~~~~~~~p~ 295 (366)
+|.+=++..++ +.|+
T Consensus 183 EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHhHHHHHh--hCcc
Confidence 66655555555 3455
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=21 Score=31.50 Aligned_cols=125 Identities=6% Similarity=-0.033 Sum_probs=81.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh
Q 017743 94 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (366)
.-....|++-.|-+-+...++. .+.++.............|+++.+...+...... +.....+...++....+.|+++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 3344566766665544443332 1223333333344566789999999988876554 3445667788888899999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
.|..+-.-|+...+. +...........-..|-++++.-.|+++...+
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999998888776554 44444433344455678899999999887765
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.82 E-value=16 Score=30.10 Aligned_cols=236 Identities=12% Similarity=0.038 Sum_probs=144.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI----KEMESVLSRMKSNQCKPDIIT 158 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 158 (366)
.+|.......+.++...|..+ +...+..+... +|...-...+.++.+.|+. +++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 466667777777777777533 33444444433 3556666667777777763 4677777776443 456666
Q ss_pred HHHHHHHHhccCCh-----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 159 FNLLIDSYGKRQAF-----DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233 (366)
Q Consensus 159 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 233 (366)
-...+.++...+.. ..+...+.... ..++..+-...+.++.+.++. .+...+-.+.+ .++..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHH
Confidence 66666666655422 22333333332 234556666777777777764 56666666655 34555555555
Q ss_pred HHhhccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchH
Q 017743 234 TMYGYCD-NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312 (366)
Q Consensus 234 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 312 (366)
.++...+ +...+...+..+.. .++..+-...+.++.+.|+. .|...+-...+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5665543 23456666655554 34677778888888888874 5666655555543 2 245677888888885
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 017743 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343 (366)
Q Consensus 313 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 343 (366)
+|...+..+.+.. ||..+-...+.+|.+
T Consensus 252 -~a~p~L~~l~~~~--~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -TLLPVLDTLLYKF--DDNEIITKAIDKLKR 279 (280)
T ss_pred -hHHHHHHHHHhhC--CChhHHHHHHHHHhc
Confidence 6888888888633 578887777777754
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.79 E-value=0.25 Score=35.91 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=28.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 017743 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180 (366)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 180 (366)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444555555555556655554444455555666666666655555555444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=86.60 E-value=13 Score=30.25 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----
Q 017743 93 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK---- 168 (366)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 168 (366)
|.+++..+++.++....-+..+.--+....+...-|-.|.+.+.+..+.++-..-.+..-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5556666666665555444433221222333344444555666666655555555443222223334444444332
Q ss_pred -cCChhHHHHHH
Q 017743 169 -RQAFDKMEQVF 179 (366)
Q Consensus 169 -~~~~~~a~~~~ 179 (366)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45555555544
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=85.70 E-value=40 Score=33.55 Aligned_cols=80 Identities=9% Similarity=0.083 Sum_probs=42.4
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLP--TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (366)
+.+|..+|+|.+|..+..++.. ..+.. +-..|+.-+...+++-+|-++..+.... | .-.+..+++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHh
Confidence 3445555555555555554421 11111 1245666667777777777776665532 2 22334455666
Q ss_pred cHHHHHHHHHHHH
Q 017743 241 NVSRAREIFDELS 253 (366)
Q Consensus 241 ~~~~a~~~~~~~~ 253 (366)
.+++|.++.....
T Consensus 1041 ~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1041 EWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHhcc
Confidence 6777776655443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.39 E-value=8.9 Score=29.89 Aligned_cols=76 Identities=11% Similarity=-0.022 Sum_probs=54.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--YTPSFITYECIITM 235 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 235 (366)
....++.+.+.+...+++...+.-.+.+ +.|...-..+++.++-.|++++|..-++..-+.. ..+....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667778888999998888777753 3466667778888999999999988777665542 23445667777764
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.32 E-value=3.2 Score=20.86 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776654
|
... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.21 E-value=1.6 Score=20.67 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 017743 13 IYSKLIAVMGKKGQTRLAMWLFS 35 (366)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~ 35 (366)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44567788889999999988875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.17 E-value=2.4 Score=23.39 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMRNSG 41 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~g 41 (366)
.+..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47889999999999999999998643
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.14 E-value=3.3 Score=20.51 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 299 YKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+-.+..++.+.|++++|.+.|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345667778888999999988888763
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.95 E-value=3.3 Score=20.79 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNS 40 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 40 (366)
.+|..+...+...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46778888999999999999999988763
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=84.86 E-value=15 Score=27.78 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=25.0
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCC
Q 017743 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 327 (366)
+++|...|+...+ ..|+..+|..-+....+ |-++..++.+++.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k------ap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAAK------APELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT------HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh------hHHHHHHHHHHHh
Confidence 4455555555555 36788888877766543 5556666666554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.47 E-value=41 Score=32.65 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 017743 123 TYNGVMDAYGKNGMIKEMESVLSRMKSN 150 (366)
Q Consensus 123 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 150 (366)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3677778888888888888888887653
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.90 E-value=8.6 Score=32.17 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=65.2
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (366)
..-|.+.|.+++|++.|...+.. .| +..++..-..+|.+...+..|+.=-...+..+ ..-...|+.-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 35699999999999999988774 44 88888888999999999988776666555432 2223345555555555667
Q ss_pred HHHHHHHHHHHHhCC
Q 017743 242 VSRAREIFDELSKLG 256 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~ 256 (366)
..+|.+-++...+..
T Consensus 181 ~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 181 NMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHhHHHHHhhC
Confidence 777777777776653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=83.41 E-value=27 Score=29.74 Aligned_cols=67 Identities=12% Similarity=-0.064 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP---SFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 189 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
....+|..+...+.+.|.++.|...+..+...+... .+...-.-...+-..|+..+|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455678888999999999999999999988754211 3334444455566788999999999888873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.39 E-value=38 Score=31.32 Aligned_cols=188 Identities=15% Similarity=0.074 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc-hHHHHHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHhcC--
Q 017743 27 TRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT-RDKAKALAKALGYFQKMKGM---ERCKPNIVTYNILLRACAQAR-- 100 (366)
Q Consensus 27 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~-~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~-- 100 (366)
...|.+.++...+.|. ...-..+...+... .....+.+.|+.+|....+. .-..-.......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 4567777777776552 22222222222221 12445578888888777541 000112334555666666532
Q ss_pred ---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCChhH
Q 017743 101 ---NVDQVNALFKELHESILAPDIYTYNGVMDAYGK-NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY--GKRQAFDK 174 (366)
Q Consensus 101 ---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 174 (366)
+...|..++...-+.|. |+...+...+..... ..+...|.++|....+.|.. ....+..++... ....+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 56668888877777652 343333222222211 23567888888888777643 222222222111 23456777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
|..++++..+.| .|....-...+..+.. +.++.+.-.+..+.+.+
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 888888877776 2222222222233333 66666666665555554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.36 E-value=33 Score=30.70 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=66.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 017743 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 199 (366)
|.....+++..+..+..+.-+..+..+|...| .+...|..++.+|..+ ..+.-..+|+++.+... .|+..-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33344444444444444444444444444432 2344444444444444 33444444444444321 12222223333
Q ss_pred HHHhcCcHhHHHHHHHHHHhCCCC-----CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 017743 200 NYGKARLQGKAEYVFQKMTAMKYT-----PSFITYECIITMYGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAYCM 273 (366)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 273 (366)
.|.+ ++...+..+|.+....-++ .-...|..+.... ..+.+....+...+... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3322 4444444444444322111 0012333333211 23344444444444332 222223334444445555
Q ss_pred cCChhHHHHHHHHhhhCC
Q 017743 274 NGLPTEADLLFENSHNMG 291 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~ 291 (366)
..++++|++++..+.+++
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 555555555555555443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.69 E-value=36 Score=30.54 Aligned_cols=181 Identities=13% Similarity=0.082 Sum_probs=128.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
+.|..+.-+++..+..+..+.-+..+..+|+..| .+...+..++.+|... ..++-..+|+.+.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 5677788899999999999999999999999875 4778899999999988 677888999988887543 44444455
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHh
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKP-----TLPTFNSMIINYGKARLQGKAEYVFQKMTAM-KYTPSFITYECIITMY 236 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 236 (366)
...|-+ ++...+...|.++...-++. -...|..+...- ..+.+....+...+... |...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555544 88888888888887652221 112455444321 35667777777777643 4344456677777888
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
....++++|++++..+.+.+-+ |.-.-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 8899999999999988877543 454444555443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.46 E-value=20 Score=27.61 Aligned_cols=92 Identities=16% Similarity=-0.050 Sum_probs=64.7
Q ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 199 INYGKARLQGKAEYVFQKMTAMKYTPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
.-+.+.|++++|..-|...+....... ...|..-..++.+.+.++.|+.-....++.++. .......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 446788999999999999888742222 233444456777888888888888777776543 233333445578888
Q ss_pred CChhHHHHHHHHhhhCC
Q 017743 275 GLPTEADLLFENSHNMG 291 (366)
Q Consensus 275 g~~~~a~~~~~~~~~~~ 291 (366)
..+++|++=|..+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88999998888888764
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.31 E-value=13 Score=26.12 Aligned_cols=45 Identities=16% Similarity=0.036 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
..+.++.+...++.|++.....-+.+|.+.+++..|.++|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334445555556666666666666666666666666666666554
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=82.25 E-value=16 Score=33.73 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred hhchHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 017743 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339 (366)
Q Consensus 308 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 339 (366)
+.|++.+|.+.+-.+.+.++.|...-..-+.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 45778888888888888888776654444433
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.07 E-value=22 Score=27.81 Aligned_cols=161 Identities=16% Similarity=0.074 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIIT 234 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~ 234 (366)
+.+||.+.--+...|+++.|.+.|+...+..+.-+-...|.-|.. .-.|++.-|.+-+...-+.+ -.|-...|-.+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 567777777788888888888888888775444444444433332 23577777776665554443 2233334444433
Q ss_pred HhhccCcHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-------HHHHHHHHHHH
Q 017743 235 MYGYCDNVSRAREIF-DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-------SSTYKLLYKAY 306 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-------~~~~~~l~~~~ 306 (366)
..-++.+|..-+ ++.... |..-|...|-.|.- |++. ...+++.+... -.-+ ..||-.+..-+
T Consensus 178 ---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHH
Confidence 234555555433 333332 44445444433322 2211 12233333221 1111 46788899999
Q ss_pred HhhchHHHHHHHHHHHHhCCC
Q 017743 307 TKANMKELVQKLLKRMEQNGI 327 (366)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~~g~ 327 (366)
...|+.++|..+|+-.+...+
T Consensus 248 l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 248 LSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hccccHHHHHHHHHHHHHHhH
Confidence 999999999999999887654
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=81.49 E-value=15 Score=32.35 Aligned_cols=191 Identities=15% Similarity=0.062 Sum_probs=85.0
Q ss_pred CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 017743 80 ERCKPNIVT--YNILLRACAQARNVDQVNALFKELHESILAPDIY--TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155 (366)
Q Consensus 80 ~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 155 (366)
.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++ .|...+
T Consensus 24 ~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~ 95 (413)
T PHA02875 24 IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFAD 95 (413)
T ss_pred CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCccc
Confidence 345555432 334555666777765 334445556544432 12334555666777766555543 332111
Q ss_pred HH---HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC---H
Q 017743 156 II---TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS---F 226 (366)
Q Consensus 156 ~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 226 (366)
.. .-.+.+...+..|+.+ +++.+.+.|..|+.. -.+. +...+..|+.+.+..+ .+.|..++ .
T Consensus 96 ~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~L----l~~g~~~~~~d~ 166 (413)
T PHA02875 96 DVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIELL----IDHKACLDIEDC 166 (413)
T ss_pred ccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHH----HhcCCCCCCCCC
Confidence 10 0112333344455554 344444555544322 1222 2333455665544333 33443322 2
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST---LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
...+.|.. .+..|+.+ +.+.+.+.|..++... ...++...+..|+.+ +.+.+.+.|..++.
T Consensus 167 ~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 167 CGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 22233332 33445544 3444555555554322 123444445556554 33444556666654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.05 E-value=30 Score=28.59 Aligned_cols=235 Identities=9% Similarity=-0.042 Sum_probs=145.6
Q ss_pred CCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCC
Q 017743 43 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV----DQVNALFKELHESILA 118 (366)
Q Consensus 43 ~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~ 118 (366)
.+|.......+.++...+. +++...+..+.. .+|...-...+.++...|+. .++...+..+... .
T Consensus 34 d~d~~vR~~A~~aL~~~~~-----~~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D 102 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-----QDVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--D 102 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-----chHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--C
Confidence 4577677677777654432 344444444443 45666666777778887763 5677777766443 3
Q ss_pred CChhhHHHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHH
Q 017743 119 PDIYTYNGVMDAYGKNGMI-----KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193 (366)
Q Consensus 119 ~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (366)
++..+-...+.++...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+... ++...
T Consensus 103 ~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~V 175 (280)
T PRK09687 103 KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDV 175 (280)
T ss_pred CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHH
Confidence 5666666666666554321 233444444333 34667777888888888874 566666666542 45555
Q ss_pred HHHHHHHHHhcC-cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 194 FNSMIINYGKAR-LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 194 ~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
-...+.++.+.+ ....+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++.
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg 246 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHH
Confidence 555666666543 23456666666664 56777788888888888884 5555555555543 2 2346778888
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
..|.. +|...+..+.+. .||..+-...+.+|.
T Consensus 247 ~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88885 688888887764 357776666665553
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.02 E-value=22 Score=26.92 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=34.1
Q ss_pred HHHHHHHhhhCCCCCC-HHHHHHHHHHHHhhc-----------hHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 017743 280 ADLLFENSHNMGVTPD-SSTYKLLYKAYTKAN-----------MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 280 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 344 (366)
|+.-|++.+. +.|+ ..++..+-.++...+ .++.|...|++..+ ..|+..+|+.-|+...+.
T Consensus 54 AisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 54 AISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHTH
T ss_pred HHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhh
Confidence 3333444443 2344 345555555554433 25666677777666 569999999888877543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.24 E-value=27 Score=31.88 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhh-HHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 017743 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV-YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91 (366)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~-~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 91 (366)
.-+.++..+-++|-.++|+++- +|... +... . +.|+++.|.++..+. .+..-|..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~rFela----l----~lgrl~iA~~la~e~-------~s~~Kw~~ 671 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQRFELA----L----KLGRLDIAFDLAVEA-------NSEVKWRQ 671 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhhhhhh----h----hcCcHHHHHHHHHhh-------cchHHHHH
Confidence 4566778888888888887752 33221 2222 2 455688888877664 36677999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (366)
|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. |.. .-+|...|+
T Consensus 672 Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~A-----F~~~~l~g~ 736 (794)
T KOG0276|consen 672 LGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NLA-----FLAYFLSGD 736 (794)
T ss_pred HHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-chH-----HHHHHHcCC
Confidence 99999999999999999987654 445677777788887777777777776643 332 345667899
Q ss_pred hhHHHHHHHHH
Q 017743 172 FDKMEQVFKSL 182 (366)
Q Consensus 172 ~~~a~~~~~~~ 182 (366)
++++.+++.+-
T Consensus 737 ~~~C~~lLi~t 747 (794)
T KOG0276|consen 737 YEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhc
Confidence 99998887654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.22 E-value=49 Score=30.57 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHh
Q 017743 66 LAKALGYFQKMKGMERCKPNIVTYNILLR----A-CAQARNVDQVNALFKELHE-------SILAPDIYTYNGVMDAYGK 133 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~ 133 (366)
...|.++++...+.. +......+.. + +....+.+.|+.+|+.+.+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 568888888887632 3333333322 2 4456789999999999877 44 34466677777776
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcC
Q 017743 134 NG-----MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG--KAR 205 (366)
Q Consensus 134 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~ 205 (366)
.. +.+.|..++....+.|.+ +....-..+..... ..+...|.++|....+.|.. ....+..++.... ...
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCC
Confidence 43 667899999999888743 55444433333333 35788999999999887643 2222222221111 235
Q ss_pred cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
+...|..++++.-+.| .|...--...+..+.. ++.+.+.-.+..+...+
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 7888999999998887 4443333333333443 66666666665555544
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.14 E-value=11 Score=23.93 Aligned_cols=46 Identities=7% Similarity=-0.082 Sum_probs=27.5
Q ss_pred hcCChhHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhhchHHHHHHH
Q 017743 273 MNGLPTEADLLFENSHNMGVTPD--SSTYKLLYKAYTKANMKELVQKL 318 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~ 318 (366)
..++.++|+..|....+.-..|. -.++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777766665432222 23556667777777777766654
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 75.6 bits (184), Expect = 6e-15
Identities = 28/212 (13%), Positives = 60/212 (28%), Gaps = 9/212 (4%)
Query: 27 TRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86
++A L R + P L+ A +
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQA-----PSGQHSQAQLSGQQ 127
Query: 87 VTYNILLRACAQARNVDQVNALFKELHESI---LAPDIYTYNGVMDAYGKNGMIKEMESV 143
+ C + + L H + YN VM + + G KE+ V
Sbjct: 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV 187
Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
L +K PD++++ + G++ Q +E+ + + K ++
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247
Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
+A + V + P + ++
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.5 bits (181), Expect = 1e-14
Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 7/191 (3%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
++L+ K + + + A L T L A
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ----LPLAHHLL 150
Query: 74 QKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
G +R + YN ++ A+ ++ + + ++ L PD+ +Y +
Sbjct: 151 VVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210
Query: 132 GKNGMIKEM-ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
G+ E L +M K + +L+ + + +V + + P
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP 270
Query: 191 LPTFNSMIINY 201
+ ++ +
Sbjct: 271 PVNTSKLLRDV 281
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 3e-11
Identities = 34/322 (10%), Positives = 81/322 (25%), Gaps = 48/322 (14%)
Query: 28 RLAMWLFSEMRNSGCRPDP--------SVYNALITAHLHTRDKAKALAKAL-GYFQKMKG 78
R A L + R R + + + L+K + G +
Sbjct: 25 RWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTR 84
Query: 79 MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK 138
P LL+ ++D A + ++ L+ +
Sbjct: 85 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 144
Query: 139 EMESVLSRMKS---NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
+L + + +N ++ + ++ AF +
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE--------------------- 183
Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA-REIFDELSK 254
YV + TP ++Y + G D + +++S+
Sbjct: 184 --------------LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229
Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
G ++ +L + + P L + + +
Sbjct: 230 EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
Query: 315 VQKLLKRMEQNGIVPNKRFFLE 336
KL ++ + K+ +E
Sbjct: 290 YPKLHLPLKTLQCLFEKQLHME 311
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.2 bits (118), Expect = 7e-07
Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 11/231 (4%)
Query: 2 QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
Q+Q+ + +Y+ ++ ++G + +++ ++++G PD Y A +
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
Query: 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
A + + ++M + T +L L P +
Sbjct: 216 DAGTIER---CLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPV 272
Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
T + D Y K+G + + L + L + + V K
Sbjct: 273 NTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMEL--------ASRVCVVSVEKP 324
Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
+ SKE + + + L ++ Y F Y +
Sbjct: 325 TLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFL 375
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 8e-06
Identities = 27/217 (12%), Positives = 69/217 (31%), Gaps = 10/217 (4%)
Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
D E ++ R S K +++ + D R ++K+ ++ L+ ++
Sbjct: 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI 353
Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
+ + +A +F+K T + + Y + S A +I
Sbjct: 354 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413
Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-- 306
F+ K D+ + A ++ +LFE G P + ++ +
Sbjct: 414 FELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS-GEIWARFLA 471
Query: 307 ------TKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
A++ ++ ++ + ++
Sbjct: 472 FESNIGDLASILKVEKRRFTAFREEYEGKETALLVDR 508
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 5e-05
Identities = 40/374 (10%), Positives = 104/374 (27%), Gaps = 111/374 (29%)
Query: 8 IAD---TGIYSKLIAVMGKKGQTR------LAMWL---FSEMRNSGCRPDP---SVYNAL 52
+ D + + T L +L ++ +P S+
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 53 ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL 112
I L T D ++ + N ++ + + +F L
Sbjct: 337 IRDGLATWD----------NWKHV--------NCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN---QCKPDIITFNL-------- 161
S+ P + ++ + + ++ V++++ + +P T ++
Sbjct: 379 --SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 162 ------------LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
++D Y + FD S +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFD-----------SDDLIPPYLDQ-------------- 471
Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
Y + S I + + + + ++ R +F + L + ++ +
Sbjct: 472 --YFY----------SHIGHH--LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV- 328
+N L L F + + + Y+ L A + ++ + L+ + ++
Sbjct: 518 GSILNTL---QQLKFYKPY---ICDNDPKYERLVNAILD-FLPKIEENLI-CSKYTDLLR 569
Query: 329 -----PNKRFFLEA 337
++ F EA
Sbjct: 570 IALMAEDEAIFEEA 583
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 30/201 (14%), Positives = 65/201 (32%), Gaps = 8/201 (3%)
Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
D E ++ R S K +++ + D R ++K+ ++ L+ ++
Sbjct: 72 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI 131
Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
+ + +A +F+K T + + Y + S A +I
Sbjct: 132 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191
Query: 249 FDE-LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
F+ L K G + + A ++ +LFE G P + ++ +
Sbjct: 192 FELGLKKYGDIPEY--VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS-GEIWARFL 248
Query: 308 ----KANMKELVQKLLKRMEQ 324
+ K+ KR
Sbjct: 249 AFESNIGDLASILKVEKRRFT 269
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.75 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.73 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.72 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.72 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.71 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.71 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.7 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.69 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.65 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.64 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.64 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.63 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.6 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.59 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.58 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.57 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.51 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.49 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.48 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.45 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.44 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.43 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.39 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.38 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.3 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.27 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.26 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.24 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.23 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.23 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.23 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.23 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.22 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.22 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.2 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.2 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.18 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.16 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.15 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.15 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.14 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.14 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.12 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.11 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.11 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.09 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.09 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.08 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.08 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.06 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.05 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.02 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.01 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.0 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.0 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.95 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.93 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.91 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.91 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.89 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.89 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.85 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.85 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.85 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.84 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.83 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.83 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.82 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.82 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.82 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.82 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.81 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.81 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.81 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.81 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.8 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.78 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.78 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.77 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.77 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.77 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.75 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.74 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.71 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.66 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.66 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.64 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.62 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.61 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.58 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.56 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.56 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.56 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.55 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.54 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.54 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.54 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.53 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.52 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.52 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.51 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.51 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.51 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.48 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.44 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.42 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.39 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.35 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.35 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.34 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.34 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.33 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.32 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.32 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.3 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.3 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.24 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.24 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.24 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.22 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.21 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.16 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.16 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.15 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.11 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.08 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.05 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.04 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.02 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.0 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.96 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.96 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.87 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.87 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.85 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.79 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.64 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.6 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.48 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.47 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.12 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.05 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.04 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.0 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.97 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.9 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.9 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.87 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.85 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.8 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.61 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.61 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.56 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.47 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.42 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.31 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.24 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.04 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.97 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.95 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.77 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.67 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.64 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.51 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.61 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 94.41 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.33 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.31 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.2 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.72 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 93.68 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.26 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.85 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.65 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.57 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.11 | |
| 3eiq_C | 358 | Programmed cell death protein 4; PDCD4, anti-oncog | 91.02 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.66 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.59 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.58 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.84 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.33 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 85.89 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 85.7 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.33 | |
| 2zu6_B | 307 | Programmed cell death protein 4; protein-protein c | 84.62 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 83.58 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 83.53 | |
| 2nsz_A | 129 | Programmed cell death protein 4; PDCD4, tumor supp | 82.54 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.01 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.7 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.29 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.0 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.31 | |
| 2ion_A | 152 | PDCD4, programmed cell death 4, PDCD4; alpha-helic | 80.26 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-35 Score=254.66 Aligned_cols=204 Identities=13% Similarity=0.126 Sum_probs=109.4
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hhH
Q 017743 105 VNALFKELHESILAPDI-YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA---------FDK 174 (366)
Q Consensus 105 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 174 (366)
+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444445444443332 34556666666666666666666666666666666666666666655443 345
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 255 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555555555555544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=251.09 Aligned_cols=206 Identities=14% Similarity=0.146 Sum_probs=157.8
Q ss_pred HHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---------H
Q 017743 68 KALGYFQKMKGMERCKPNI-VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM---------I 137 (366)
Q Consensus 68 ~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~ 137 (366)
.+..+.+.+.+ .+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. +
T Consensus 8 ~~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34445555554 4444433 35777888888888888888888888888888888888888888876554 5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 017743 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217 (366)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 217 (366)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|+.++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 77888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.+..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888888888888888888877653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-30 Score=235.85 Aligned_cols=333 Identities=11% Similarity=0.042 Sum_probs=286.6
Q ss_pred cccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHH----------------------------
Q 017743 6 WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAH---------------------------- 56 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~---------------------------- 56 (366)
+..++..+|+.++..|.+.|++++|.++|++|.+.+ |+ ...+..+...+
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 445678999999999999999999999999998864 43 33333332111
Q ss_pred ------hhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 017743 57 ------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130 (366)
Q Consensus 57 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 130 (366)
+....+.|++++|.++|+++.+. +++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLAS 348 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHH
Confidence 11222567899999999999863 6899999999999999999999999999999876 4478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHH
Q 017743 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210 (366)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 210 (366)
+.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998653 457889999999999999999999999999875 334688999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+.+.+..+. +..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 427 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 427 ISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999875 557889999999999999999999999999987654 7899999999999999999999999999876
Q ss_pred ----CCCCC--HHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcccccCC
Q 017743 291 ----GVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 349 (366)
Q Consensus 291 ----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 349 (366)
+..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..++..+...+...|....
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 66787 7899999999999999999999999999865 3467889999999988877543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-30 Score=231.45 Aligned_cols=223 Identities=9% Similarity=-0.051 Sum_probs=153.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 017743 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200 (366)
Q Consensus 121 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 200 (366)
..+++.++.+|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|.++++++... .+.+..++..++..
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIY 382 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHH
Confidence 33344444444444444444444444443321 13444444444444445555555555444433 23457777888888
Q ss_pred HHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 017743 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 280 (366)
|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+.+.+.++. +..+|..++.+|.+.|++++|
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887653 445778888888888888888888888888876543 678888888888888888888
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC----CCCCC--hhHHHHHHHHhhcccccC
Q 017743 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN----GIVPN--KRFFLEALETFSSSLAGS 348 (366)
Q Consensus 281 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~~--~~~~~~ll~~~~~~~~~~ 348 (366)
.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..++..+...+...|...
T Consensus 461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 88888887764 347888888888888888888888888888765 66777 578888888888777653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-24 Score=184.78 Aligned_cols=300 Identities=10% Similarity=0.049 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 91 (366)
..+..+...+...|++++|...++...+.. +.+...|..+...+. ..|++++|+..|+++.+.. +.+..+|..
T Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 106 (388)
T 1w3b_A 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK----ERGQLQEAIEHYRHALRLK--PDFIDGYIN 106 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH----HCCCHHHHHHHHHHHHHcC--cchHHHHHH
Confidence 344444455555555555555555554432 223444555555554 2233555555555554321 223444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (366)
+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|+
T Consensus 107 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 107 LAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 5555555555555555555555442 1123334444445555555555555555554432 1234445555555555555
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 017743 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 251 (366)
+++|...|+++.... +.+...+..+...+...|++++|...+++..... +.+..++..+..++...|++++|...|+.
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555554432 1234444444444445555555555554444432 22344444444445555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
+.+.++. +..+|..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 263 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 263 AIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444322 34444444455555555555555555444432 22444444444445555555555555554444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-24 Score=184.71 Aligned_cols=308 Identities=13% Similarity=0.073 Sum_probs=263.4
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 86 (366)
+.+..+|..+...+.+.|++++|.+.|+++... .|+ ...|..+...+. ..|++++|++.|+++.+.. +.+.
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~--p~~~ 135 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALV----AAGDMEGAVQAYVSALQYN--PDLY 135 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----HHSCSSHHHHHHHHHHHHC--TTCT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--CCcH
Confidence 457788999999999999999999999999875 454 456888888887 4555999999999988642 4455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 213 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVL 213 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 678888889999999999999999998874 3367889999999999999999999999998864 33678888999999
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 246 (366)
...|++++|...+++..... +.+..++..+...+...|++++|...++++.+.. +.+..+|..+..++.+.|++++|.
T Consensus 214 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 214 KEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998853 3367889999999999999999999999999875 445778999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
..|+.+.+..+ .+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+++.+
T Consensus 292 ~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-- 367 (388)
T 1w3b_A 292 DCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-- 367 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--
T ss_pred HHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 99999998754 378899999999999999999999999998864 34688999999999999999999999999987
Q ss_pred CCCCh
Q 017743 327 IVPNK 331 (366)
Q Consensus 327 ~~~~~ 331 (366)
+.|+.
T Consensus 368 ~~p~~ 372 (388)
T 1w3b_A 368 ISPTF 372 (388)
T ss_dssp TCTTC
T ss_pred hCCCC
Confidence 44543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-23 Score=180.60 Aligned_cols=316 Identities=13% Similarity=0.023 Sum_probs=262.1
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHH
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 87 (366)
+.+..++..+...+.+.|++++|..+|+.+.+.. +.+...+..+...+...+ ++++|+..|+++.+.. +.+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~--p~~~~ 95 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMG----KSKAALPDLTKVIQLK--MDFTA 95 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhcC--CCcHH
Confidence 3456788999999999999999999999998763 336777888888887554 4999999999988643 55688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCC
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESILAPDI---YTYNGV------------MDAYGKNGMIKEMESVLSRMKSNQC 152 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~ 152 (366)
++..+..++...|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|...++++.+..
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 173 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC- 173 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 99999999999999999999999998764 2233 455555 444889999999999999998764
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232 (366)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (366)
+.+..++..+..+|...|++++|.++|+++... .+.+..++..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~ 251 (450)
T 2y4t_A 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY 251 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 447888999999999999999999999999876 34578899999999999999999999999998764 3344555544
Q ss_pred ------------HHHhhccCcHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 233 ------------ITMYGYCDNVSRAREIFDELSKLGKDMK----VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 233 ------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
...+...|++++|...|+.+.+..+. + ...+..+...+.+.|++++|...++++.+.. +.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~ 329 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH
Confidence 78899999999999999999886433 3 4578889999999999999999999998764 3478
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 017743 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338 (366)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 338 (366)
..|..+..+|...|++++|...++++.+ +.|+.......+
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 369 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 9999999999999999999999999998 456654443333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-20 Score=158.68 Aligned_cols=310 Identities=11% Similarity=0.002 Sum_probs=253.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
|+..+..+...+...|++++|...|+.+.+.. +.+...+..+...+. ..|++++|+..|+++.+.. +.+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~--~~~~~~~ 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----AMGKSKAALPDLTKVIALK--MDFTAAR 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH----HccCHHHHHHHHHHHHHhC--CCcchHH
Confidence 46678889999999999999999999998763 224666777777776 4555999999999988643 4577889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 017743 90 NILLRACAQARNVDQVNALFKELHESILA--PDIYTYNGV------------MDAYGKNGMIKEMESVLSRMKSNQCKPD 155 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 155 (366)
..+...+...|++++|...++++.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 153 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWD 153 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCc
Confidence 99999999999999999999999876320 244444444 578889999999999999998864 347
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHH-----
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE----- 230 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 230 (366)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH
Confidence 888999999999999999999999999886 34578899999999999999999999999998764 33344333
Q ss_pred -------HHHHHhhccCcHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH
Q 017743 231 -------CIITMYGYCDNVSRAREIFDELSKLGKDMKV----STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299 (366)
Q Consensus 231 -------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 299 (366)
.+...+...|++++|...++.+.+..+. +. ..+..+..++...|++++|...+++..+.. +.+..++
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 309 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 2366788999999999999999887544 33 335567889999999999999999998864 3378899
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhH
Q 017743 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333 (366)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 333 (366)
..+...+...|++++|...|++..+. .|+...
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~ 341 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQ 341 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChH
Confidence 99999999999999999999999984 466443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-20 Score=164.22 Aligned_cols=326 Identities=14% Similarity=0.069 Sum_probs=255.2
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH-
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI- 86 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 86 (366)
+.+..+|..+...+...|++++|...|+.+.+.+ +.+...+..+...+...+ ++++|+..|+++.... +.+.
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~--~~~~~ 129 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQG----KLDEAEDDFKKVLKSN--PSENE 129 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTSC--CCHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcC--CCChh
Confidence 3468889999999999999999999999998874 225677888888887544 4999999999998632 3334
Q ss_pred --HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 017743 87 --VTYNIL------------LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152 (366)
Q Consensus 87 --~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 152 (366)
..+..+ ...+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+..
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 207 (450)
T 2y4t_A 130 EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK- 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 555555 444889999999999999999874 4478889999999999999999999999998763
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHH------------HHHHHhcCcHhHHHHHHHHHHhC
Q 017743 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM------------IINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
+.+..++..+...|...|++++|...|+++.... +.+...+..+ ...+...|++++|...++.+.+.
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4478899999999999999999999999998753 2345555544 78899999999999999999875
Q ss_pred CCCCC-----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 017743 221 KYTPS-----FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295 (366)
Q Consensus 221 ~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 295 (366)
. |+ ...+..+..++.+.|++++|...++.+.+..+. +...|..+..+|...|++++|...++++.+.... +
T Consensus 287 ~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~ 362 (450)
T 2y4t_A 287 E--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-D 362 (450)
T ss_dssp C--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-C
T ss_pred C--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-h
Confidence 3 43 457888999999999999999999999887543 7899999999999999999999999999986422 5
Q ss_pred HHHHHHHHHHH------------Hhhc-----hHHHHHHHHHHH-HhCC--CCCC-------hhHHHHHHHHhhccccc
Q 017743 296 SSTYKLLYKAY------------TKAN-----MKELVQKLLKRM-EQNG--IVPN-------KRFFLEALETFSSSLAG 347 (366)
Q Consensus 296 ~~~~~~l~~~~------------~~~~-----~~~~a~~~~~~m-~~~g--~~~~-------~~~~~~ll~~~~~~~~~ 347 (366)
...+..+..+. ...| +.+++.+.|+++ .+.. ..|+ ...|..+-.++...++.
T Consensus 363 ~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 363 QQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 66666666432 2223 445667777763 3321 1122 23566666676666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-20 Score=165.95 Aligned_cols=243 Identities=7% Similarity=-0.072 Sum_probs=158.1
Q ss_pred cCCHHHHHHHHHHHHH-----cCC--------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017743 99 ARNVDQVNALFKELHE-----SIL--------APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (366)
.|++++|...|+++.+ ... +.+..++..+...+...|++++|...++++.+... +...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHH
Confidence 5566666666666655 210 11234555666666777777777777777666532 26666667777
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776642 2345667777777777777777777777777654 33456777777777778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-CC----HHHHHHHHHHHHh---hchHHHHHH
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT-PD----SSTYKLLYKAYTK---ANMKELVQK 317 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~~~~~~a~~ 317 (366)
...++.+.+..+. +...+..+...+...|++++|...++++.+.... ++ ...+..+...+.. .|++++|..
T Consensus 358 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 358 ETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 8888777765433 5667777777777888888888777777653211 11 3367777777777 788888888
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHhhccccc
Q 017743 318 LLKRMEQNGIVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 318 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 347 (366)
.++++.+.. +.+...+..+-..+...+..
T Consensus 437 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 465 (514)
T 2gw1_A 437 LLEKASKLD-PRSEQAKIGLAQMKLQQEDI 465 (514)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCH
Confidence 887777642 12344555555555555543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-20 Score=154.59 Aligned_cols=288 Identities=9% Similarity=-0.053 Sum_probs=169.4
Q ss_pred ccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH
Q 017743 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86 (366)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 86 (366)
...+...+..+...+...|++++|.++|+.+.+... .+...+..+...+. ..+++++|...++++.+.. +.+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~--~~~~ 90 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLV----ELNKANELFYLSHKLVDLY--PSNP 90 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTST
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHH----HhhhHHHHHHHHHHHHHhC--cCCH
Confidence 344555666666667777777777777777665421 13334444444444 3344666666666665432 3445
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017743 87 VTYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165 (366)
Q Consensus 87 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (366)
..+..+...+...| ++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 168 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 56666666666666 6777777776666543 22455566666666667777777777666665432 234455556666
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC--------CCCCHHHHHHHHHHhh
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--------YTPSFITYECIITMYG 237 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 237 (366)
+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. .+....++..+..++.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 666666777766666666542 2345666666666666666666666666655421 0222345666666666
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 306 (366)
..|++++|...++...+..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 248 ~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 666666666666666655433 45566666666666666666666666665543 22455555555554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-20 Score=163.64 Aligned_cols=265 Identities=9% Similarity=-0.011 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHHHhc-----CCCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 017743 63 AKALAKALGYFQKMKG-----MERC-------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130 (366)
Q Consensus 63 ~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 130 (366)
.|++++|+..|+++.. .... +.+..++..+...+...|++++|...++++.+.. |+..++..+..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 3557777777777664 2111 2235678888899999999999999999999875 338888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHH
Q 017743 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210 (366)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 210 (366)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++..... .+...+..+...+...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998874 34678899999999999999999999999988643 3667888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCChhHHHH
Q 017743 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD-MK----VSTLNAMLEAYCM---NGLPTEADL 282 (366)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~a~~ 282 (366)
...++.+.+.. +.+...+..+...+...|++++|...++.+.+.... ++ ...+..+...+.. .|++++|..
T Consensus 358 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 358 ETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 99999998764 445678899999999999999999999998765322 11 4489999999999 999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHH
Q 017743 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335 (366)
Q Consensus 283 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 335 (366)
.++.+.+.. +.+..++..+...+...|++++|...|++..+. .|+.....
T Consensus 437 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~ 486 (514)
T 2gw1_A 437 LLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKL 486 (514)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHH
Confidence 999998865 346888999999999999999999999999984 45544333
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-19 Score=150.43 Aligned_cols=286 Identities=10% Similarity=-0.029 Sum_probs=237.8
Q ss_pred CCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 017743 43 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122 (366)
Q Consensus 43 ~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 122 (366)
..+...+..+...+... |++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..
T Consensus 19 ~~~~~~~~~~a~~~~~~----g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 91 (330)
T 3hym_B 19 QENLDVVVSLAERHYYN----CDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPV 91 (330)
T ss_dssp -CCCTTHHHHHHHHHHT----TCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTH
T ss_pred hhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHH
Confidence 34556666777777644 45999999999987643 4556677788889999999999999999999874 44678
Q ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 017743 123 TYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201 (366)
Q Consensus 123 ~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 201 (366)
.+..+...+...| ++++|.+.+++..+.. +.+...+..+...+...|++++|...++++..... .+...+..+...+
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 169 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 8899999999999 9999999999998874 33678899999999999999999999999988643 3456677799999
Q ss_pred HhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHh
Q 017743 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG--------KDMKVSTLNAMLEAYCM 273 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~ 273 (366)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.. ......++..+...+..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999875 5567899999999999999999999999987642 13346789999999999
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHh
Q 017743 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN-KRFFLEALETF 341 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~ 341 (366)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .|+ ...+..+..++
T Consensus 249 ~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 999999999999998865 336788999999999999999999999998874 454 44555555555
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.4e-20 Score=155.20 Aligned_cols=249 Identities=9% Similarity=0.048 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 017743 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 145 (366)
+++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..++...|++++|.+.++
T Consensus 80 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 80 LPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp HHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566666666655422 3445555556666666666666666666655543 2345555555666666666666666666
Q ss_pred HHHHCCCCCCHHHHHH---------------HHHHHhccCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCcHhH
Q 017743 146 RMKSNQCKPDIITFNL---------------LIDSYGKRQAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGK 209 (366)
Q Consensus 146 ~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~ 209 (366)
++.+.... +...+.. .+..+...|++++|...|+++....... +..++..+...+...|++++
T Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 157 DWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp HHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence 65554321 1111110 1222225556666666666655532211 35555555566666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
|...++++.+.. +.+..++..+...+...|++++|...|+.+.+..+. +...+..+..+|...|++++|...|+++.+
T Consensus 236 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 236 AVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666555442 333455555666666666666666666665554322 455555566666666666666666655544
Q ss_pred CCCCC----------CHHHHHHHHHHHHhhchHHHHHHHHH
Q 017743 290 MGVTP----------DSSTYKLLYKAYTKANMKELVQKLLK 320 (366)
Q Consensus 290 ~~~~p----------~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (366)
..... ...+|..+..++...|++++|..+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 32110 14555556666666666665555544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-17 Score=140.94 Aligned_cols=288 Identities=14% Similarity=0.052 Sum_probs=232.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCC---C
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK---P 84 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~ 84 (366)
.+..++..+...+...|++++|...|+.+.+.. | +...+..+...+. ..|++++|+..|++..+.. + .
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~--~~~~~ 106 (359)
T 3ieg_A 35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLL----KQGKLDEAEDDFKKVLKSN--PSEQE 106 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHTSC--CCHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHH----HcCChHHHHHHHHHHHhcC--CcccC
Confidence 457789999999999999999999999998763 4 5566777777776 5556999999999998632 2 2
Q ss_pred CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 017743 85 NIVTYNIL------------LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152 (366)
Q Consensus 85 ~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 152 (366)
+...+..+ ...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 184 (359)
T 3ieg_A 107 EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK- 184 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 44555555 578899999999999999999874 4577889999999999999999999999998874
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHH------------HHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN------------SMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
+.+..++..+...+...|++++|...+++..+... .+...+. .+...+.+.|++++|...+++..+.
T Consensus 185 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 185 SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44788999999999999999999999999988633 2344333 2366688999999999999999876
Q ss_pred CCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 221 KYTPSF----ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 221 ~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
. +.+. ..+..+..++...|++++|...++...+..+. +...+..+...+...|++++|...|+++.+... -+.
T Consensus 264 ~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~ 340 (359)
T 3ieg_A 264 E-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQ 340 (359)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCH
T ss_pred C-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCh
Confidence 4 2233 33556788999999999999999999987543 788999999999999999999999999998652 246
Q ss_pred HHHHHHHHHHHhhc
Q 017743 297 STYKLLYKAYTKAN 310 (366)
Q Consensus 297 ~~~~~l~~~~~~~~ 310 (366)
..+..+..+....+
T Consensus 341 ~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 341 QIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666654433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-18 Score=153.59 Aligned_cols=253 Identities=9% Similarity=-0.004 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 017743 65 ALAKALGYFQKMKGMERCKPN-------IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI 137 (366)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 137 (366)
.+++|+.+++++.+.. +.+ ..++..+...+...|++++|...++++.+.. |+..++..+...+...|++
T Consensus 217 ~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCH
Confidence 4555555555555421 222 2245556666777778888888888877753 4566777777777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 017743 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217 (366)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 217 (366)
++|.+.++++.+.. +.+..++..+...+...|++++|...++++..... .+...+..+...+...|++++|...++++
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888777653 33567777777888888888888888888777532 34566777777788888888888888877
Q ss_pred HhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhc----------CChhHHHH
Q 017743 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK-----DMKVSTLNAMLEAYCMN----------GLPTEADL 282 (366)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~----------g~~~~a~~ 282 (366)
.+.. +.+...+..+...+...|++++|...|+.+.+..+ ......+......+... |++++|..
T Consensus 371 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 371 KLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp HHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence 7654 44456777777888888888888888877665321 11223344455666666 88888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 283 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.++++.+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 450 ~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 450 LLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888877754 336778888888888888888888888888874
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-18 Score=151.84 Aligned_cols=322 Identities=9% Similarity=-0.018 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
...|..+...+.+.|++++|...|+++.... +.+...+..+...+. ..|++++|++.|+++.+.. +.+..++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~--p~~~~~~~ 97 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYI----STGDLEKVIEFTTKALEIK--PDHSKALL 97 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcC--CchHHHHH
Confidence 3456666777777777777777777776653 124555666666665 3344777777777766532 44566677
Q ss_pred HHHHHHHhcCCHHHHHHHHH------------------------------------------------------------
Q 017743 91 ILLRACAQARNVDQVNALFK------------------------------------------------------------ 110 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~------------------------------------------------------------ 110 (366)
.+..++...|++++|...|+
T Consensus 98 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 77777777777777766653
Q ss_pred -------------------------------------------------HHHHcCCCCC--------hhhHHHHHHHHHh
Q 017743 111 -------------------------------------------------ELHESILAPD--------IYTYNGVMDAYGK 133 (366)
Q Consensus 111 -------------------------------------------------~~~~~~~~~~--------~~~~~~ll~~~~~ 133 (366)
++.+. .|+ ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHh
Confidence 22221 122 1234555566777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHH
Q 017743 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213 (366)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 213 (366)
.|++++|...++++.+. .|+...+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 88888888888888775 4557778888888888888888888888887753 34677788888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC--
Q 017743 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-- 291 (366)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-- 291 (366)
+++..+.. +.+...+..+..++...|++++|...++.+.+..+. +...+..+...+...|++++|...++++.+..
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 88888764 334567888888888888888888888888877544 57788888888888888888888888876532
Q ss_pred ---CCCCHHHHHHHHHHHHhh----------chHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccccc
Q 017743 292 ---VTPDSSTYKLLYKAYTKA----------NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 292 ---~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 347 (366)
.......+......+... |++++|...+++..+.. +.+...+..+-..+...|..
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 111223345555667777 88899998888888743 12345666666666666654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-19 Score=150.58 Aligned_cols=264 Identities=10% Similarity=0.031 Sum_probs=186.2
Q ss_pred hhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 017743 47 SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126 (366)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 126 (366)
..+..+...+. ..|++++|+..|+++.... +.+..+|..+...+...|++++|...|+++.+.. +.+..++..
T Consensus 66 ~~~~~~~~~~~----~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (365)
T 4eqf_A 66 PGAFEEGLKRL----KEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMA 138 (365)
T ss_dssp TTHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 34555555555 4455888888888877533 5567788888888888888888888888887764 335777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CCHHHH
Q 017743 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPD-----------IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTF 194 (366)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 194 (366)
+..+|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++...... ++..++
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 8888888888888888888877642 22 222334567778888888888888888775332 157778
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 195 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
..+...+...|++++|...+++..+.. +.+..+|..+..++...|++++|...|+.+.+..+. +..++..+..+|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHC
Confidence 888888888888888888888887764 445778888888888888888888888888776543 577788888888888
Q ss_pred CChhHHHHHHHHhhhCCCC-----------CCHHHHHHHHHHHHhhchHHHHHHHHHH
Q 017743 275 GLPTEADLLFENSHNMGVT-----------PDSSTYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
|++++|...|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888888888877653211 1256778888888888888777766544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-18 Score=147.45 Aligned_cols=268 Identities=10% Similarity=0.015 Sum_probs=220.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
+...+..+...+.+.|++++|...|+.+.+.. +.+...+..+...+... |++++|+..|+++.+.. +.+..++
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~--~~~~~~~ 135 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAEN----EQELLAISALRRCLELK--PDNQTAL 135 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC----cCHHHHHHHHHHHHhcC--CCCHHHH
Confidence 35668889999999999999999999999864 23566777777777744 45999999999988643 5678899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 017743 90 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNG---------------VMDAYGKNGMIKEMESVLSRMKSNQCKP 154 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 154 (366)
..+...+...|++++|...++++...... +...+.. .+..+...|++++|...++++.+.....
T Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 214 (368)
T 1fch_A 136 MALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS 214 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc
Confidence 99999999999999999999999986522 2222221 2344448999999999999998864321
Q ss_pred -CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 155 -DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233 (366)
Q Consensus 155 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 233 (366)
+..++..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 215 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~ 292 (368)
T 1fch_A 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLG 292 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 57889999999999999999999999998863 4468899999999999999999999999998764 45678999999
Q ss_pred HHhhccCcHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 234 TMYGYCDNVSRAREIFDELSKLGKDM----------KVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
.++...|++++|...|+.+.+..+.. ...+|..+..++...|++++|..++.+.
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999999999999987653321 2688999999999999999999887743
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-18 Score=147.74 Aligned_cols=267 Identities=9% Similarity=-0.006 Sum_probs=216.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
+...+..+...+.+.|++++|...|+.+.+.. +.+...+..+...+...+ ++++|+..|++..... +.+..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~--p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENE----NEQAAIVALQRCLELQ--PNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhcC--CCCHHHH
Confidence 45568889999999999999999999998764 236677888888887554 4999999999988643 5568899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHH
Q 017743 90 NILLRACAQARNVDQVNALFKELHESILAPDIY----------TYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-PDIIT 158 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 158 (366)
..+...|...|++++|...++++.+... .+.. .+..+...+...|++++|...++++.+.... ++..+
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 9999999999999999999999988631 1222 2334578899999999999999999887432 16889
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (366)
+..+...+...|++++|.+.|+++.+.. +.+..+|..+..+|...|++++|...+++..+.. +.+..++..+..++..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 9999999999999999999999998863 4478899999999999999999999999998874 4458899999999999
Q ss_pred cCcHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 239 CDNVSRAREIFDELSKLGKD-----------MKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
.|++++|...|+.+.+..+. .+...|..+..++...|+.+.+.++..+
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998764321 1367899999999999999999887765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-18 Score=143.93 Aligned_cols=233 Identities=9% Similarity=0.015 Sum_probs=158.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL--- 161 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 161 (366)
+..++..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 131 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQ 131 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhH
Confidence 33444444445555555555555555554442 223444444555555555555555555555443211 1111111
Q ss_pred ----------H-HH-HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHH
Q 017743 162 ----------L-ID-SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 162 ----------l-~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
+ .. .+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 209 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLW 209 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHH
Confidence 1 22 3777888889998888887763 3367788888888888999999999998888764 4457788
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-----------CHHH
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-----------DSST 298 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~ 298 (366)
..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|.+.++++.+..... +..+
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 88888899999999999999988876543 67888889999999999999999998887653221 4678
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHH
Q 017743 299 YKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
|..+..++...|++++|..++++.
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888999999999999998887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-18 Score=143.19 Aligned_cols=268 Identities=9% Similarity=0.002 Sum_probs=219.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
+...+..+...+...|++++|..+|+.+.+... .+...+..+...+... |++++|...|+++.+.. +.+..++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~--~~~~~~~ 92 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAEN----EKDGLAIIALNHARMLD--PKDIAVH 92 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcC--cCCHHHH
Confidence 445677788999999999999999999987642 2566777777777744 44999999999987643 5678899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCC
Q 017743 90 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV--------------MD-AYGKNGMIKEMESVLSRMKSNQCKP 154 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~ 154 (366)
..+...+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 170 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PN 170 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CC
Confidence 999999999999999999999999864 2233334333 22 3778899999999999998874 33
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 234 (366)
+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 248 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAV 248 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 78889999999999999999999999998863 4468889999999999999999999999998764 456788999999
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDM-----------KVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
++...|++++|...++.+.+..+.. +...|..+..++...|++++|..++++..
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999988764432 47789999999999999999999987654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-18 Score=138.68 Aligned_cols=274 Identities=12% Similarity=0.054 Sum_probs=190.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCh--hhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 017743 18 IAVMGKKGQTRLAMWLFSEMRNSGCRPDP--SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95 (366)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (366)
++.....|++..|+..++..... .|+. .....+.+++...+ +++.|+..++.. .+|+..++..+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g----~~~~al~~~~~~-----~~~~~~a~~~la~~ 74 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQR----KYGVVLDEIKPS-----SAPELQAVRMFAEY 74 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTT----CHHHHHHHSCTT-----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCC----CHHHHHHHhccc-----CChhHHHHHHHHHH
Confidence 44556678888888887765432 3433 23344556666443 477777655431 25677778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 017743 96 CAQARNVDQVNALFKELHESILAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (366)
+...++.++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++
T Consensus 75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence 888888888888888887765434 445566666788888888888888877 4577788888888888888888
Q ss_pred HHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 017743 175 MEQVFKSLMHSKEKPTLPTF---NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 251 (366)
|.+.|+++.... |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...|++
T Consensus 149 A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 149 ARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888887753 332211 122333445588888888888888763 56777888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTE-ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
+.+..+. ++.++..++..+...|+.++ +.++++++.+.. |+... +.+...+.+.++++..
T Consensus 226 al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 226 ALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHH
Confidence 8877654 77788888888888888865 567888877753 44322 2233455555555543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-17 Score=133.58 Aligned_cols=254 Identities=13% Similarity=0.078 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNI--VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 139 (366)
..|.++.|+..++..... .|+. .....+.++|...|+++.|...++. .-+|+..++..+...+...++.++
T Consensus 11 ~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 445588999988876542 3443 4556778999999999999987754 235677888899999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 017743 140 MESVLSRMKSNQCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 140 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 218 (366)
|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998876544 566677778999999999999999987 4678899999999999999999999999999
Q ss_pred hCCCCCCHHH---HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 017743 219 AMKYTPSFIT---YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295 (366)
Q Consensus 219 ~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 295 (366)
+.. |+... ...++..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...+++..+.. +-+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 874 44321 12334445566999999999999998854 488999999999999999999999999998875 337
Q ss_pred HHHHHHHHHHHHhhchHHH-HHHHHHHHHhCCCCCChhHH
Q 017743 296 SSTYKLLYKAYTKANMKEL-VQKLLKRMEQNGIVPNKRFF 334 (366)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~g~~~~~~~~ 334 (366)
..++..++..+...|+.++ +.++++++.+ +.|+....
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~ 271 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFI 271 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHH
Confidence 8899999999999999876 6789999887 44665443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-20 Score=167.55 Aligned_cols=151 Identities=7% Similarity=-0.005 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHh---CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 017743 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTA---MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266 (366)
Q Consensus 190 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 266 (366)
-..+|+++|.+|++.|+.++|.++|.+|.+ .|+.||..+||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877654 36788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCh-hHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC------hhHHHHHHH
Q 017743 267 MLEAYCMNGLP-TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN------KRFFLEALE 339 (366)
Q Consensus 267 li~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~ll~ 339 (366)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.+ +++..+++ +-++.|+ ..+...+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 88888888874 677888888888888888888888876555543 33344444 3345544 334444455
Q ss_pred Hhhccc
Q 017743 340 TFSSSL 345 (366)
Q Consensus 340 ~~~~~~ 345 (366)
.+++.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=164.88 Aligned_cols=120 Identities=16% Similarity=0.262 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELH---ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (366)
-..+||++|++|++.|++++|.++|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35689999999999999999999998876 457999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 017743 162 LIDSYGKRQAF-DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204 (366)
Q Consensus 162 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 204 (366)
+|.++++.|+. ++|.++|++|...|+.||..+|+.++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999985 78999999999999999999999988766554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-16 Score=128.43 Aligned_cols=240 Identities=13% Similarity=-0.023 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHH
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PD----IITF 159 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 159 (366)
...+..+...+...|++++|...|+++.+.. .+..++..+..++...|++++|.+.+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888899999999999999999999887 68889999999999999999999999998764211 12 5788
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 017743 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239 (366)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 239 (366)
..+...+...|++++|...|++.... .|+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88999999999999999999999884 3443 34566788999999999998864 34567888999999999
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHH
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (366)
|++++|...++.+.+..+. +...+..+...+...|++++|...+++..+.. +.+...|..+...+...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999887654 78899999999999999999999999998875 346888999999999999999999999
Q ss_pred HHHHhCC----CCCChhHHHHHHH
Q 017743 320 KRMEQNG----IVPNKRFFLEALE 339 (366)
Q Consensus 320 ~~m~~~g----~~~~~~~~~~ll~ 339 (366)
++..+.. ..|+.......+.
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHhChhhcCCCchHHHHHHHH
Confidence 9987632 2255544444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=140.55 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=80.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCH
Q 017743 23 KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102 (366)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (366)
+.|++++|.+.++++. ++.+|..+..++. ..+.+++|++.|.+ .+|..+|..++..+...|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l----~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQL----QKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHH----HcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCH
Confidence 4466777777777662 2236777766666 44447777777744 24555677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 017743 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (366)
++|..+++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 7777766655553 3445666677777777777777666663 255667777777777777777777777755
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH
Q 017743 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262 (366)
Q Consensus 183 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 262 (366)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHh
Confidence 25677777777777777777777766 2566777777777777777777444332 222344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
....++..|.+.|++++|..+++...... +-....|.-+..+|++
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 45566777777777777777777666543 3344455554444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-17 Score=137.86 Aligned_cols=268 Identities=12% Similarity=0.116 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (366)
+++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+. ..|.+++|+.+++...+. .+++.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae----~~g~~EeAi~yl~~ark~---~~~~~i 96 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAAN----TSGNWEELVKYLQMARKK---ARESYV 96 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHh---Cccchh
Confidence 4456999999999999999999999965 357779999998887 566799999988877652 456788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+
T Consensus 97 ~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~ 160 (449)
T 1b89_A 97 ETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 160 (449)
T ss_dssp ------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHH
Confidence 9999999999999999998884 367789999999999999999999999976 378999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 248 (366)
.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|++++|..+
T Consensus 161 Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 161 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp TTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998 37899999999999999999996554432 23333455799999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-CCCCC------CHHHHHHHHHHHHhhchHHHHHHH
Q 017743 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN-MGVTP------DSSTYKLLYKAYTKANMKELVQKL 318 (366)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p------~~~~~~~l~~~~~~~~~~~~a~~~ 318 (366)
++...... +-....|+-|.-+|++- ++++..+.++.... .+++| +...|.-++-.|.+.++++.|..+
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 99998776 44788899888888875 34444443333222 22333 345688888888899999988753
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-16 Score=122.01 Aligned_cols=198 Identities=12% Similarity=-0.035 Sum_probs=96.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 017743 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 199 (366)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33344444444444444444444444444332 1234444444444444444444444444444431 123344444444
Q ss_pred HHHhc-----------CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 200 NYGKA-----------RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268 (366)
Q Consensus 200 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 268 (366)
.+... |++++|...+++..+.. +-+...+..+..++...|++++|...|++..+.+ .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 44444 66666666666665543 2335556666666666666666666666666655 3566666666
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
.++...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 66666666666666666666543 2245566666666666666666666665543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5e-16 Score=121.75 Aligned_cols=200 Identities=12% Similarity=0.032 Sum_probs=151.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
+++...+..+...+...|++++|...|++.++.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566778888888888889999998888888764 3467778888888888889999988888888764 3366778888
Q ss_pred HHHHhcc-----------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHH
Q 017743 163 IDSYGKR-----------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231 (366)
Q Consensus 163 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 231 (366)
..++... |++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888888 99999999999988753 3367788888888999999999999999988876 67788888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 232 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
+..++...|++++|...|+...+..+. +...+..+...+...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 899999999999999999998887654 67888888889999999999988887654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-13 Score=119.95 Aligned_cols=258 Identities=12% Similarity=-0.006 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017743 10 DTGIYSKLIAVMGK----KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85 (366)
Q Consensus 10 ~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (366)
++.++..+...|.. .+++++|...|+...+.| +...+..+-..+.......++.++|++.|++..+ ..+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~~~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL----KGL 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTC
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----CCC
Confidence 44555555555555 566666666666666543 3334444444443200002236666666666554 234
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH
Q 017743 86 IVTYNILLRACAQ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPDII 157 (366)
Q Consensus 86 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 157 (366)
...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 4555555555555 556666666666665543 34455555555554 455666666666655543 444
Q ss_pred HHHHHHHHHhc----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHhCCCCCCHHHH
Q 017743 158 TFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 158 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
.+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55555555554 555555555555555432 33344444444443 445555555555544432 22233
Q ss_pred HHHHHHhhc----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHhhh
Q 017743 230 ECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN-----GLPTEADLLFENSHN 289 (366)
Q Consensus 230 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~ 289 (366)
..+...+.. .++.++|...|+...+.+ +...+..+...|... +++++|...+++..+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 333333333 444444544444444432 233334444444443 444444444444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-13 Score=120.58 Aligned_cols=291 Identities=12% Similarity=0.040 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017743 10 DTGIYSKLIAVMGK----KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85 (366)
Q Consensus 10 ~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (366)
++.++..+...|.. .+++++|.+.|++..+.| +...+..+-..+.......+++++|+..|++..+ .-+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~~~ 146 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE----QGR 146 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTC
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----CCC
Confidence 44556666666666 677777777777776643 3344444444443210002336677777776664 234
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH
Q 017743 86 IVTYNILLRACAQ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPDII 157 (366)
Q Consensus 86 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 157 (366)
...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +..
T Consensus 147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 220 (490)
T 2xm6_A 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DEL 220 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHH
Confidence 5556666666665 566777777776666653 45556666666665 566666666666666543 344
Q ss_pred HHHHHHHHHhc----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHhCCCCCCHHHH
Q 017743 158 TFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 158 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
.+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 221 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~ 294 (490)
T 2xm6_A 221 GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQ 294 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHH
Confidence 45555555543 556666666666655432 23344444444444 455555555555555432 22334
Q ss_pred HHHHHHhhcc-----CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhhCCCCCCHHHHHH
Q 017743 230 ECIITMYGYC-----DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHNMGVTPDSSTYKL 301 (366)
Q Consensus 230 ~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~ 301 (366)
..+...|... +++++|...|+...+.+ +...+..+...|...| ++++|.+.|++..+.| +...+..
T Consensus 295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 368 (490)
T 2xm6_A 295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFN 368 (490)
T ss_dssp HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHH
Confidence 4444444443 45555555555554443 2334444444444433 4445555555544432 3444444
Q ss_pred HHHHHHh----hchHHHHHHHHHHHHhC
Q 017743 302 LYKAYTK----ANMKELVQKLLKRMEQN 325 (366)
Q Consensus 302 l~~~~~~----~~~~~~a~~~~~~m~~~ 325 (366)
+...|.. .+++++|..+|++..+.
T Consensus 369 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 369 LGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 4444444 44555555555554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-15 Score=122.21 Aligned_cols=249 Identities=12% Similarity=0.013 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD--IITFNLLID 164 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 164 (366)
..+......+...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+++..+....++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445667788889999999999999998864 33566888889999999999999999999988432222 344788889
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (366)
.+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998863 3366788899999999999999999999988773 4456777777734444569999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCC-CCCC------HHHHHHHHHHHHhhchHHH
Q 017743 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGL---PTEADLLFENSHNMG-VTPD------SSTYKLLYKAYTKANMKEL 314 (366)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~~~~~~ 314 (366)
|...|+.+.+..+. +...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999887544 57788888888888888 888988888876531 1133 2578888889999999999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 315 VQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 315 a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
|...+++..+ +.|+.......+...
T Consensus 240 A~~~~~~al~--~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 240 ADAAWKNILA--LDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHC--
T ss_pred HHHHHHHHHh--cCccHHHHHHHhhhh
Confidence 9999999998 447665554444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-15 Score=121.33 Aligned_cols=226 Identities=9% Similarity=-0.010 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCC-CCCC----
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPN---- 85 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---- 85 (366)
...|..+...+...|++++|...|+...+.. .+...+..+...+...++ +++|+..+++..+... ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~----~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGE----YETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHccc----HHHHHHHHHHHHHhCcccccchHHH
Confidence 4567777777888888888888888877665 556666666666654333 6666666666553210 0111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (366)
..++..+...+...|++++|...++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 4566666667777777777777777666642 332 23444455666666666655542 1234445555555
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
+...|++++|...+++..... +.+..++..+...+...|++++|...++...+.. +.+...+..+..++...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 555555555555555555432 2234445555555555555555555555554432 22344444455555555555555
Q ss_pred HHHHHHHHh
Q 017743 246 REIFDELSK 254 (366)
Q Consensus 246 ~~~~~~~~~ 254 (366)
...++...+
T Consensus 227 ~~~~~~a~~ 235 (258)
T 3uq3_A 227 LETLDAART 235 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-14 Score=115.74 Aligned_cols=225 Identities=13% Similarity=0.024 Sum_probs=188.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPDIITF 159 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (366)
-+..++..+...+...|++++|.+.|++..+. -+..++..+...+.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45677888888888999999999999988873 356778888888888 899999999999988875 67788
Q ss_pred HHHHHHHhc----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHhCCCCCCHHHHHH
Q 017743 160 NLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFITYEC 231 (366)
Q Consensus 160 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 231 (366)
..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 888888888 899999999999988864 67788888888888 899999999999988865 4566777
Q ss_pred HHHHhhc----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 017743 232 IITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLY 303 (366)
Q Consensus 232 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 303 (366)
+...+.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777777 889999999999988875 56778888888888 899999999999988864 367788888
Q ss_pred HHHHh----hchHHHHHHHHHHHHhCC
Q 017743 304 KAYTK----ANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 304 ~~~~~----~~~~~~a~~~~~~m~~~g 326 (366)
..|.. .+++++|.++|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 88888 889999999999988865
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-15 Score=122.83 Aligned_cols=248 Identities=8% Similarity=-0.102 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 017743 62 KAKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 139 (366)
..+++++|+..|+++.+.... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346689999999998863211 1246678889999999999999999999999875 3467889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
|.+.++++.+.. +.+...+..+...+...|++++|...|+++.... |+.......+..+...|++++|...+.....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999998864 3367888999999999999999999999998853 3333444444555677999999999988776
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 220 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
.. +++...+. ++..+...++.++|...++...+..... +...+..+...|...|++++|...|++..... |+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 53 33444443 6667777888899999998887653221 25778889999999999999999999998864 422
Q ss_pred HHHHHHHHHHHhhchHHHHHHHH
Q 017743 297 STYKLLYKAYTKANMKELVQKLL 319 (366)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~ 319 (366)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 233355777889998888766
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9.6e-15 Score=117.26 Aligned_cols=201 Identities=10% Similarity=0.032 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (366)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455555666666666666666666665542 2244455555555555555555555555554432 1234444444555
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
+...|++++|.++++++...+..| .+...+..+...+...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~----------------------------------~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYP----------------------------------ERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCT----------------------------------THHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCc----------------------------------ccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555544411112 1233444444445555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 161 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555554444322 34445555555555555555555555554432 22444455555555555555555555555554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-14 Score=114.08 Aligned_cols=201 Identities=10% Similarity=-0.049 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556666666666666666666666666543 2244555555666666666666666666655442 224445555555
Q ss_pred HHhcc-CChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH
Q 017743 165 SYGKR-QAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242 (366)
Q Consensus 165 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (366)
.+... |++++|...++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 55555 55555555555555421112 13344444445555555555555555444432 22234444444444444444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
++|...++.+.+..+..+...+..+...+...|+.+++..+++.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444444444443221133344444444444444444444444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-14 Score=121.79 Aligned_cols=250 Identities=8% Similarity=-0.017 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
...|+.+...+...|++++|+..++++++.. +-+..+|+.+..++...|+ +++|+..|+++.+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4578888889999999999999999999875 3367889999999999997 99999999999987533 7889999999
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc-cCcHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY-CDNVS 243 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 243 (366)
++...|++++|+..|++++... +.+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999863 3478899999999999999999999999999875 4568899999999988 56657
Q ss_pred HH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc------
Q 017743 244 RA-----REIFDELSKLGKDMKVSTLNAMLEAYCMNG--LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN------ 310 (366)
Q Consensus 244 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------ 310 (366)
+| +..++......+. +...|..+...+...| ++++|++.+.++ +.. +.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5888888887655 7888999999999888 689999999988 443 446788889999998874
Q ss_pred ---hHHHHHHHHHHH-HhCCCCCCh-hHHHHHHHHhhcc
Q 017743 311 ---MKELVQKLLKRM-EQNGIVPNK-RFFLEALETFSSS 344 (366)
Q Consensus 311 ---~~~~a~~~~~~m-~~~g~~~~~-~~~~~ll~~~~~~ 344 (366)
..++|.++++++ .+ +.|.. ..|..+...+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHH
Confidence 358999999998 55 44554 4455555555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-14 Score=115.92 Aligned_cols=202 Identities=11% Similarity=-0.034 Sum_probs=163.4
Q ss_pred hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 017743 46 PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125 (366)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (366)
...+..+...+.. .+++++|+..|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+.
T Consensus 37 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQ----RGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH
Confidence 4556666666664 455999999999988643 5578899999999999999999999999999874 34678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 017743 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204 (366)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 204 (366)
.+...+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.+++..... +.+...+..+...+...
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc
Confidence 99999999999999999999998733334 56778888889999999999999999988763 33577788888888888
Q ss_pred CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
|++++|...++.+.+.. +.+...+..+...+...|+.++|.+.++.+.+..
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88888888888887754 4556677777778888888888888888877764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-14 Score=111.77 Aligned_cols=214 Identities=10% Similarity=0.051 Sum_probs=172.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 017743 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 199 (366)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45667788888999999999999999888763 3467788888889999999999999999988763 346778888888
Q ss_pred HHHhc-CcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 200 NYGKA-RLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 200 ~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
.+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++.+.+..+. +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 99999 999999999999887332343 567888888899999999999999998877544 678888899999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 017743 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338 (366)
Q Consensus 278 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 338 (366)
++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+. .|+......++
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 999999998887653247777888888888899999999999888763 36655555444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-13 Score=121.40 Aligned_cols=205 Identities=9% Similarity=0.037 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCChh-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 017743 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGK-------RQAFD-------KMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204 (366)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 204 (366)
++..+|++..... +.+...|..++..+.+ .|+++ +|..+|++....-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4455565555542 3356667767766664 68876 8999999987632344688899999999999
Q ss_pred CcHhHHHHHHHHHHhCCCCCC-H-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHH
Q 017743 205 RLQGKAEYVFQKMTAMKYTPS-F-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMNGLPTEAD 281 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~ 281 (366)
|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|+...+.... +...|...... +...|++++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999986 343 3 57888888888899999999999999886432 34444333222 34689999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC-CCCC--hhHHHHHHHHhhcccccC
Q 017743 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG-IVPN--KRFFLEALETFSSSLAGS 348 (366)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~~--~~~~~~ll~~~~~~~~~~ 348 (366)
.+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...++.....|+..
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999988764 2368889999999999999999999999998864 2332 235655566555555543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-15 Score=118.69 Aligned_cols=201 Identities=7% Similarity=0.030 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556666667777777777777777776643 3355666666777777777777777777766553 235566666667
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (366)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777766642 2355566666666667777777777776666543 3345566666666666677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
|...++.+.+.... +..++..+...|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77666666655432 4566666666666667777776666666654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-15 Score=117.86 Aligned_cols=208 Identities=10% Similarity=0.071 Sum_probs=164.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 017743 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198 (366)
Q Consensus 119 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 198 (366)
.....+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345667788888999999999999999998864 3478889999999999999999999999998863 34788899999
Q ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 017743 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (366)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998865 456788999999999999999999999999887544 7888999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhH
Q 017743 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333 (366)
Q Consensus 279 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 333 (366)
+|...++++.+.. +.+..++..+...+...|++++|...++++.+. .|+...
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 228 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHML 228 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHH
Confidence 9999999998865 346889999999999999999999999999884 455443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-14 Score=113.59 Aligned_cols=237 Identities=11% Similarity=0.081 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC--HHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN--IVT 88 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 88 (366)
...+......+...|++++|+..|+...+... .+...+..+...+...+ ++++|+..+++... .+..++ ..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~----~~~~A~~~~~~a~~-~~~~~~~~~~~ 76 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELA----KYDLAQKDIETYFS-KVNATKAKSAD 76 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTT----CHHHHHHHHHHHHT-TSCTTTCCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHh----hHHHHHHHHHHHHh-ccCchhHHHHH
Confidence 34555667777788888888888888776531 13335666666665333 37777777777765 211111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
|..+...+...|++++|.+.|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 6777777777777777777777777653 2355667777777777777777777777766552 2345555555523333
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc---HhHHHHHHHHHHhCC-CCCC------HHHHHHHHHHhhc
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL---QGKAEYVFQKMTAMK-YTPS------FITYECIITMYGY 238 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~ 238 (366)
.+++++|.+.|+++.+.. +.+...+..+...+...++ +++|...+++..+.. ..|+ ..+|..+...+..
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 447777777777776642 2235555556666666665 556666666555431 0122 1345555555666
Q ss_pred cCcHHHHHHHHHHHHhCC
Q 017743 239 CDNVSRAREIFDELSKLG 256 (366)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~ 256 (366)
.|++++|...|+...+..
T Consensus 234 ~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALD 251 (272)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 666666666666665544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-13 Score=108.84 Aligned_cols=207 Identities=13% Similarity=0.023 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCH
Q 017743 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMI 137 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~ 137 (366)
+++|+..|++..+ +.+...+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++
T Consensus 22 ~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~ 94 (273)
T 1ouv_A 22 FTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNT 94 (273)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCH
Confidence 5666666665554 2344556666666666 777777777777777654 56666777777777 7777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCcHhH
Q 017743 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQGK 209 (366)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~ 209 (366)
++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++
T Consensus 95 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~ 168 (273)
T 1ouv_A 95 NKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKK 168 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHH
Confidence 77777777777654 56667777777777 777777777777777654 45566666666766 777888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhc----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEAD 281 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 281 (366)
|...+++..+.+ +...+..+...+.. .+++++|...|+...+.+ +...+..+...|.. .+++++|.
T Consensus 169 A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~ 242 (273)
T 1ouv_A 169 ALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAI 242 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 888887777653 34566667777777 788888888888877764 35667777777777 78888888
Q ss_pred HHHHHhhhCC
Q 017743 282 LLFENSHNMG 291 (366)
Q Consensus 282 ~~~~~~~~~~ 291 (366)
+.|++..+.|
T Consensus 243 ~~~~~a~~~~ 252 (273)
T 1ouv_A 243 ENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcC
Confidence 8888877765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.4e-13 Score=116.12 Aligned_cols=307 Identities=10% Similarity=0.003 Sum_probs=214.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----C--CCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC-
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-----G--CRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM- 79 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~- 79 (366)
.....||.+...+...|++++|++.|++..+. + ..| ...+|+.+-..|...++ +++|...+++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~----~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR----LSDVQIYVDKVKHVC 124 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHh
Confidence 34567999999999999999999999987542 1 122 34567777777775544 88888777765431
Q ss_pred ----CCC-CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHH
Q 017743 80 ----ERC-KPNIVTYNILLRACAQA--RNVDQVNALFKELHESILAPDIYTYNGVMDA---YGKNGMIKEMESVLSRMKS 149 (366)
Q Consensus 80 ----~~~-~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~ 149 (366)
... .....++..+..++... +++++|...|++..+.. +-+...+..+..+ +...++.++|++.+++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 111 12345666666555554 56999999999999874 2244555555444 3456778889999998877
Q ss_pred CCCCCCHHHHHHHHHHHh----ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC
Q 017743 150 NQCKPDIITFNLLIDSYG----KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225 (366)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 225 (366)
.. +.+...+..+...+. ..+++++|.+.+++.... .+.+...+..+...|...|++++|...+++..+.. +.+
T Consensus 204 l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 280 (472)
T 4g1t_A 204 LN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNN 280 (472)
T ss_dssp HC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred cC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCh
Confidence 63 235556655554443 457789999999998876 34577888999999999999999999999998764 445
Q ss_pred HHHHHHHHHHhhcc-------------------CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 226 FITYECIITMYGYC-------------------DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 226 ~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
..++..+..+|... +..+.|...++...+..+. +...+..+...+...|++++|+..|++
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 66776666555322 3456788888888776544 566788899999999999999999999
Q ss_pred hhhCCCCCCHH--HHHHHHH-HHHhhchHHHHHHHHHHHHh
Q 017743 287 SHNMGVTPDSS--TYKLLYK-AYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 287 ~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~m~~ 324 (366)
..+....|... .+..+.. .....|++++|+..|++..+
T Consensus 360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 98865333221 2222322 23467899999999998877
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-13 Score=121.72 Aligned_cols=315 Identities=11% Similarity=0.006 Sum_probs=205.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----C-CCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCC
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-----G-CRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g-~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 82 (366)
...+|+.+...|...|++++|...+++..+. + ..+ ...++...-.++...+ .+.+++|+..|++..+..
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~y~~A~~~~~kal~~~-- 168 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG--GNQNERAKVCFEKALEKK-- 168 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHhC--
Confidence 3567999999999999999999999987642 1 111 2334444333333221 245899999999988643
Q ss_pred CCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC
Q 017743 83 KPNIVTYNILLRA---CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPD 155 (366)
Q Consensus 83 ~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 155 (366)
|.+...+..+..+ +...++.++|++.+++.++.. +.+..++..+...+.. .++.++|.+.+++..... +.+
T Consensus 169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~ 246 (472)
T 4g1t_A 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGV 246 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSC
T ss_pred CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccH
Confidence 3455556555544 345677788999999988764 3355566665555544 467889999999988764 446
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-------------------CcHhHHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-------------------RLQGKAEYVFQK 216 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------------------~~~~~a~~~~~~ 216 (366)
..++..+...|...|++++|...+++..+.. +.+..++..+..+|... +.++.|...++.
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7888999999999999999999999998863 33566666666555322 335677788887
Q ss_pred HHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCChhHHHHHHHHhhhCCC-
Q 017743 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS--TLNAMLE-AYCMNGLPTEADLLFENSHNMGV- 292 (366)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~- 292 (366)
..+.. +.+..++..+...+...|++++|...|+...+....+... .+..+.. .....|++++|+..|.+..+...
T Consensus 326 a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 326 ADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred HhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 77654 3445678888999999999999999999998875543221 2223322 23467899999998888765421
Q ss_pred ----------------------CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC-CCCChh
Q 017743 293 ----------------------TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG-IVPNKR 332 (366)
Q Consensus 293 ----------------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~ 332 (366)
+.+..+|..+...+...|++++|++.|++.++.| ..|+..
T Consensus 405 ~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 2345678888888999999999999999988764 334443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-15 Score=119.18 Aligned_cols=249 Identities=12% Similarity=-0.049 Sum_probs=189.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCC---ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 017743 21 MGKKGQTRLAMWLFSEMRNSGCRP---DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 97 (366)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~g~~p---~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (366)
....|++++|+..|+.+.+..... +...+..+...+. ..|++++|+..|++..... +.+..+|..+...+.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD----SLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH----HcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH
Confidence 345688999999999998763211 3455666666666 4455999999999988643 557889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 017743 98 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177 (366)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 177 (366)
..|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+. .|+.......+..+...|++++|..
T Consensus 89 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999874 346788999999999999999999999999886 3444445555556677899999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP---SFITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
.+++..... +++...+ .++..+...++.++|...+.......... +...+..+...+...|++++|...|+...+
T Consensus 166 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 166 VLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 998887753 3344444 36677778888899999999887653111 157888999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 017743 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284 (366)
Q Consensus 255 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 284 (366)
..+. +. .....++...|++++|++.+
T Consensus 244 ~~p~-~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 NNVH-NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred CCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence 7532 32 33355677788888887765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-13 Score=117.07 Aligned_cols=247 Identities=7% Similarity=0.014 Sum_probs=186.6
Q ss_pred hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHH
Q 017743 48 VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN-VDQVNALFKELHESILAPDIYTYNG 126 (366)
Q Consensus 48 ~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.|..+-..+. ..+++++|+..+++..... +.+..+|+.+..++...|+ +++|+..|+++++.. +-+...|+.
T Consensus 99 a~~~lg~~~~----~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 99 VYDYFRAVLQ----RDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHH----HTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHH----HCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 3444444444 3344888888888887643 5567788888888999996 999999999998875 336788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cC
Q 017743 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-AR 205 (366)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~ 205 (366)
+..++...|++++|+..|+++.+... -+...|..+..++...|++++|+..|+++++..+ .+...|+.+..++.. .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcC
Confidence 88999999999999999999888753 3788888899999999999999999999988643 367888888888888 56
Q ss_pred cHhHH-----HHHHHHHHhCCCCCCHHHHHHHHHHhhccC--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---
Q 017743 206 LQGKA-----EYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG--- 275 (366)
Q Consensus 206 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 275 (366)
..++| +..+++.+... +-+...|..+...+...| ++++|.+.+..+ +... .+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhccc
Confidence 65777 47788877764 445778888888888877 688999888887 4433 36778888888888864
Q ss_pred ------ChhHHHHHHHHh-hhCCCCCCHHHHHHHHHHHH
Q 017743 276 ------LPTEADLLFENS-HNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 276 ------~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~ 307 (366)
..++|.++++++ .+.+ +.....|..+...+.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258899999998 6643 123455555555443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.2e-14 Score=119.53 Aligned_cols=297 Identities=10% Similarity=0.002 Sum_probs=208.6
Q ss_pred HHhcCChhHHHHHHHHHHhc--CCCCCh--hhHHHHHHHHhhchHHHHHHHHHH-----------HHHHHHhcCCCCCCC
Q 017743 21 MGKKGQTRLAMWLFSEMRNS--GCRPDP--SVYNALITAHLHTRDKAKALAKAL-----------GYFQKMKGMERCKPN 85 (366)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~--g~~p~~--~~~~~ll~~~~~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~ 85 (366)
+.+.+++++|..+++++.+. .++.|. ..|-.++..-. ..-.+.++.+. +.++.+... +.+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~--~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~~ 96 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRH--NLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QAR 96 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH--HHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH---THH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH--HHHHhhcCcccccccccccchhhHHHHHHhc---CCC
Confidence 45789999999999998654 222333 23333333211 11223344444 566665431 112
Q ss_pred HHH------HHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 017743 86 IVT------YNILLRACAQARNVDQVNALFKELHESI--LA--P-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC-- 152 (366)
Q Consensus 86 ~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-- 152 (366)
... +......+...|++++|...+++..+.- .+ + ...++..+...+...|++++|...+.+..+...
T Consensus 97 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 97 LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 122 2235667788999999999999998641 11 1 246788889999999999999999998765311
Q ss_pred ----CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCcHhHHHHHHHHHHhC---
Q 017743 153 ----KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT----LPTFNSMIINYGKARLQGKAEYVFQKMTAM--- 220 (366)
Q Consensus 153 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 220 (366)
.....++..+...|...|++++|.+.+++..+.... ++ ..++..+...|...|++++|...+++..+.
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 112457788889999999999999999988753111 11 247888999999999999999999998762
Q ss_pred -CC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCC
Q 017743 221 -KY-TPSFITYECIITMYGYCDNVSRAREIFDELSKL----GKDMKVSTLNAMLEAYCMNGL---PTEADLLFENSHNMG 291 (366)
Q Consensus 221 -~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~ 291 (366)
+. +....++..+...+...|++++|...++...+. +.......+..+...+...|+ +++|+.++++...
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-- 334 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-- 334 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--
Confidence 32 334678899999999999999999999987653 111122335677888888898 7778888877622
Q ss_pred CCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 292 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.......+..+...|...|++++|...+++..+
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122345677889999999999999999998875
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-12 Score=114.55 Aligned_cols=308 Identities=12% Similarity=0.116 Sum_probs=222.5
Q ss_pred CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHhcCCCCCh---hhHHHHHHHHhhc---------hHHHHHHHH
Q 017743 10 DTGIYSKLIAVMGK---------KGQTRLAMWLFSEMRNSGCRPDP---SVYNALITAHLHT---------RDKAKALAK 68 (366)
Q Consensus 10 ~~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~~g~~p~~---~~~~~ll~~~~~~---------~~~~~~~~~ 68 (366)
+...|...+....+ .|++++|..+|+..++. |.. ..|.......-.. ....+.+..
T Consensus 120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~ 196 (530)
T 2ooe_A 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMN 196 (530)
T ss_dssp CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHH
Confidence 45677777776655 78999999999999873 432 3333222210000 012355777
Q ss_pred HHHHHHHH------hcC--CCCCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCChhhH
Q 017743 69 ALGYFQKM------KGM--ERCKPN--------IVTYNILLRACAQA----RNV----DQVNALFKELHESILAPDIYTY 124 (366)
Q Consensus 69 a~~~~~~~------~~~--~~~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~ 124 (366)
|..++... .+. ..++|+ ...|...+...... ++. ..+..+|++.+... +.+...|
T Consensus 197 A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w 275 (530)
T 2ooe_A 197 ARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIW 275 (530)
T ss_dssp HHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 77766652 211 012444 24566655444332 222 47788999988863 4467888
Q ss_pred HHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-
Q 017743 125 NGVMDAYGK-------NGMIK-------EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP- 189 (366)
Q Consensus 125 ~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 189 (366)
..+...+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++. .|
T Consensus 276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~ 353 (530)
T 2ooe_A 276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDI 353 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--ccc
Confidence 888888775 78887 89999999986323446889999999999999999999999999985 34
Q ss_pred CH-HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 190 TL-PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-YGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267 (366)
Q Consensus 190 ~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (366)
+. ..|...+..+.+.|+.++|..+|++..+.. +.+...|...... +...|+.++|..+|+...+..+. +...|..+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~ 431 (530)
T 2ooe_A 354 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAY 431 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 33 588888888889999999999999999863 2233333332222 33589999999999999887543 68899999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCC-CC--CHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 268 LEAYCMNGLPTEADLLFENSHNMGV-TP--DSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 432 ~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988642 22 2458888888888999999999999998863
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.2e-13 Score=109.02 Aligned_cols=218 Identities=14% Similarity=0.125 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 103 DQVNALFKELHESILAPDIYTYNGVMDAYG-------KNGMI-------KEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
++|..+|++++... +.+...|..+...+. +.|++ ++|..+|++..+.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 335666666666654 34665 7888888887763122355677777888888
Q ss_pred cCChhHHHHHHHHHHhcCCCC-CHH-HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh-ccCcHHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKP-TLP-TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG-YCDNVSRA 245 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~-~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 245 (366)
.|++++|..+|++.+.. .| +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888774 33 233 67777777778888888888888887764 334444544333322 25888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCC--CHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-VTP--DSSTYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
..+|+...+..+. +...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888776443 67788888888888888888888888888752 344 4667778888888888888888888888
Q ss_pred HhC
Q 017743 323 EQN 325 (366)
Q Consensus 323 ~~~ 325 (366)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-12 Score=121.51 Aligned_cols=276 Identities=13% Similarity=0.102 Sum_probs=213.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 017743 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93 (366)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 93 (366)
..-+...+...|.+++|..+|++.. -.....+.++. ..+.+++|.++.++.. +..+|..+.
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie-------~i~nldrAiE~Aervn-------~p~vWsqLA 1112 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE-------HIGNLDRAYEFAERCN-------EPAVWSQLA 1112 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH-------HHhhHHHHHHHHHhcC-------CHHHHHHHH
Confidence 3446777888999999999999853 12222344433 4456999999988653 577899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh
Q 017743 94 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (366)
.++...|++++|...|.+. -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|.+.++++
T Consensus 1113 KAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHH
Confidence 9999999999999999663 377889999999999999999999999887764 33333445889999999988
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
+..... . .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.++...
T Consensus 1185 ele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1185 ELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 644332 2 346677778999999999999999999985 379999999999999999999998762
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhH
Q 017743 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333 (366)
Q Consensus 254 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 333 (366)
+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...... +-....
T Consensus 1249 ------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1249 ------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred ------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 578899999999999999998876654 33467778899999999999999999997776433 223345
Q ss_pred HHHHHHHhhcc
Q 017743 334 FLEALETFSSS 344 (366)
Q Consensus 334 ~~~ll~~~~~~ 344 (366)
|..+-..+++.
T Consensus 1317 ftELaiLyaKy 1327 (1630)
T 1xi4_A 1317 FTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHhC
Confidence 55555555444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-13 Score=120.96 Aligned_cols=215 Identities=9% Similarity=-0.032 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 017743 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI-KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 180 (366)
++++.+.++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444433321 22444444555555555555 55555555554432 1234455555555555555555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhc---------CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc--------CcHH
Q 017743 181 SLMHSKEKPTLPTFNSMIINYGKA---------RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--------DNVS 243 (366)
Q Consensus 181 ~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 243 (366)
+..+. .|+...+..+...+... |++++|...+++..+.. +.+...|..+..++... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 55543 23345555555555555 55666666665555543 33355555555555555 6666
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHH
Q 017743 244 RAREIFDELSKLGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
+|...|+...+..+. -+...|..+..+|...|++++|.+.|++..+... .+...+..+...+...|++++|+..+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666665330 2566666667777777777777777776665542 2455666666666777777766665444
Q ss_pred H
Q 017743 322 M 322 (366)
Q Consensus 322 m 322 (366)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-13 Score=102.58 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 234 (366)
+..+|..+...|...|++++|++.|++.++.. +.+..++..+...+.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45556666666666666666666666666542 2245566666666666666666666666665543 334455555666
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHH
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 314 (366)
.+...++++.+...+....+..+. +...+..+...+...|++++|++.|++..+... .+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 666666666666666666655433 556666666666677777777777766666542 256666666667777777777
Q ss_pred HHHHHHHHHh
Q 017743 315 VQKLLKRMEQ 324 (366)
Q Consensus 315 a~~~~~~m~~ 324 (366)
|+..|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766665
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-13 Score=121.11 Aligned_cols=218 Identities=10% Similarity=0.016 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV-DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 140 (366)
..+.+++++..++..... .+.+...+..+...+...|++ ++|.+.|++.++.. +.+..++..+..+|...|++++|
T Consensus 80 ~~~~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344588888888887753 255788999999999999999 99999999999875 33678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcc---------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-------
Q 017743 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKR---------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA------- 204 (366)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 204 (366)
.+.|++..+. .|+...+..+...+... |++++|.+.|++..+.. +.+...|..+..+|...
T Consensus 157 ~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 157 HTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccc
Confidence 9999999987 46678899999999999 99999999999998863 34688999999999998
Q ss_pred -CcHhHHHHHHHHHHhCCCC---CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 017743 205 -RLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 205 -~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 280 (366)
|++++|...|++..+.. + .+...|..+..++...|++++|...|+...+..+. +...+..+...+...|++++|
T Consensus 234 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 234 PKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999864 3 47889999999999999999999999999987655 678899999999999999999
Q ss_pred HHHHHHh
Q 017743 281 DLLFENS 287 (366)
Q Consensus 281 ~~~~~~~ 287 (366)
.+.+.++
T Consensus 312 i~~~~~~ 318 (474)
T 4abn_A 312 LESKGKT 318 (474)
T ss_dssp HHHTTTC
T ss_pred HHHhccc
Confidence 8766544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-13 Score=119.22 Aligned_cols=299 Identities=12% Similarity=0.030 Sum_probs=205.7
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC---
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP-----SVYNALITAHLHTRDKAKALAKALGYFQKMKGM--- 79 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~-----~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~--- 79 (366)
.+....+......+...|++++|...|+...+.+ |+. ..+..+...+... |++++|+..+++....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~ 79 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYL----HDYAKALEYHHHDLTLART 79 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHh
Confidence 4566677888899999999999999999998863 332 3455565666644 4478888877765431
Q ss_pred CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC-----------------
Q 017743 80 ERCK-PNIVTYNILLRACAQARNVDQVNALFKELHESILA-PD----IYTYNGVMDAYGKNGM----------------- 136 (366)
Q Consensus 80 ~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~----------------- 136 (366)
.+.. ....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 80 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 80 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 1111 23557888889999999999999999887764210 11 3467788888888999
Q ss_pred ---HHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHh
Q 017743 137 ---IKEMESVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPT----LPTFNSMIINYGK 203 (366)
Q Consensus 137 ---~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~ 203 (366)
+++|.+.+.+..+. +.. ....++..+...+...|++++|...+++...... .++ ..++..+...+..
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 88888888876432 111 1234677788888889999999998888765311 112 2367778888888
Q ss_pred cCcHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHh
Q 017743 204 ARLQGKAEYVFQKMTAM----KYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKD-----MKVSTLNAMLEAYCM 273 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~ 273 (366)
.|++++|...+++.... +..+. ..++..+...+...|++++|...++...+.... ....++..+...|..
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 319 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA 319 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 89999998888877643 11111 456778888888889999998888877653111 114567778888888
Q ss_pred cCChhHHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHhhchH
Q 017743 274 NGLPTEADLLFENSHNM----GVT-PDSSTYKLLYKAYTKANMK 312 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~ 312 (366)
.|++++|...+++..+. +.. ....++..+...+...|+.
T Consensus 320 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 320 LGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 88988888888876543 111 1234556666666666654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.2e-14 Score=120.64 Aligned_cols=132 Identities=10% Similarity=-0.064 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC-----CCHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKD-----MKVS 262 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 262 (366)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...++...+.... ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444455555555555555555555443210 001 124555566666666666666666555432110 0134
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCC----C-CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNMG----V-TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
++..+...+...|++++|...+++..... - .....++..+...+...|++++|..++++..+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55666666666666666666666654321 0 01134566666667777777777777776665
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-13 Score=101.14 Aligned_cols=166 Identities=11% Similarity=0.066 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
+...|..+...+...|++++|.+.|++.++.. +-+..++..+..++.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 34455555555555555555555555555543 22344455555555555555555555555444321 23344444444
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (366)
.+...++++.+...+.+.... .+.+...+..+...+.+.|++++|+..|++..+.. +.+..+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 444455555555555444443 12234444444444444444444444444444332 2233444444444444444444
Q ss_pred HHHHHHHHHh
Q 017743 245 AREIFDELSK 254 (366)
Q Consensus 245 a~~~~~~~~~ 254 (366)
|...|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-14 Score=117.99 Aligned_cols=240 Identities=16% Similarity=0.127 Sum_probs=168.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHES-------ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN------ 150 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 150 (366)
.+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34567888889999999999999999988873 22334566788888999999999999999887653
Q ss_pred C-CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC--
Q 017743 151 Q-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS------KEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAM-- 220 (366)
Q Consensus 151 ~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 220 (366)
+ .+....++..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 1234567788888999999999999999988764 2222 3456778888899999999999999988764
Q ss_pred ----CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC-------CCC-------CHHHHHHHHHHHHhcCChhHHH
Q 017743 221 ----KYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLG-------KDM-------KVSTLNAMLEAYCMNGLPTEAD 281 (366)
Q Consensus 221 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~-------~~~~~~~li~~~~~~g~~~~a~ 281 (366)
+..| ...++..+..++...|++++|...++.+.+.. ..+ ....+..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2123 34578888999999999999999998887531 111 1122333333444556666667
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..+....... +.+..++..+...|...|++++|.+++++..+
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777665542 23567888999999999999999999998875
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-13 Score=118.98 Aligned_cols=294 Identities=9% Similarity=-0.026 Sum_probs=212.5
Q ss_pred hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC
Q 017743 48 VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN----IVTYNILLRACAQARNVDQVNALFKELHES----ILAP 119 (366)
Q Consensus 48 ~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 119 (366)
.+...-..+. ..|++++|+..|++..... +.+ ..++..+...+...|++++|...+++.... +..|
T Consensus 11 ~l~~~g~~~~----~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 11 ELALEGERLC----KSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp HHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH----HhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3334444444 4455999999999987642 223 357888999999999999999999987653 1111
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHhccCC--------------------hh
Q 017743 120 -DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC-----KPDIITFNLLIDSYGKRQA--------------------FD 173 (366)
Q Consensus 120 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~ 173 (366)
...++..+...+...|++++|...+++..+... .....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 245677888899999999999999998765311 1114477888889999999 99
Q ss_pred HHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccCcHH
Q 017743 174 KMEQVFKSLMHS----KEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPS----FITYECIITMYGYCDNVS 243 (366)
Q Consensus 174 ~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 243 (366)
+|.+.+++.... +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887542 1111 234678888899999999999999998775310 111 347888899999999999
Q ss_pred HHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHHhhchHH
Q 017743 244 RAREIFDELSKLGKD-MK----VSTLNAMLEAYCMNGLPTEADLLFENSHNMGV-TPD----SSTYKLLYKAYTKANMKE 313 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~ 313 (366)
+|...++...+.... .+ ..++..+...|...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999987653111 11 56788899999999999999999998765311 112 567888999999999999
Q ss_pred HHHHHHHHHHhC----CCCCC-hhHHHHHHHHhhccccc
Q 017743 314 LVQKLLKRMEQN----GIVPN-KRFFLEALETFSSSLAG 347 (366)
Q Consensus 314 ~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~~~~ 347 (366)
+|...+++..+. |-.+. ..++..+-..+...|..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 999999987653 22222 33455555555555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.9e-14 Score=120.75 Aligned_cols=274 Identities=9% Similarity=-0.032 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChh-----hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC---CC-
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS-----VYNALITAHLHTRDKAKALAKALGYFQKMKGM---ER- 81 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-----~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~---~~- 81 (366)
...+..+...+...|++++|...|+.+.+. .|+.. .+..+...+. ..|++++|+..+++.... .+
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYF----YLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHccC
Confidence 344556778889999999999999999886 56543 4455555555 556699999999887642 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCC-----------------HHH
Q 017743 82 CKPNIVTYNILLRACAQARNVDQVNALFKELHESI-----LAPDIYTYNGVMDAYGKNGM-----------------IKE 139 (366)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~ 139 (366)
.+....++..+...|...|++++|...+++..+.. .+....++..+...+...|+ +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 12345678888999999999999999999887641 11234577888889999999 999
Q ss_pred HHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCcHhH
Q 017743 140 MESVLSRMKSN----QC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT----LPTFNSMIINYGKARLQGK 209 (366)
Q Consensus 140 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~ 209 (366)
|.+.+++..+. +. .....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 99999886542 11 112457778888999999999999999998764211 12 2367888889999999999
Q ss_pred HHHHHHHHHhCCC---C--CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCChhH
Q 017743 210 AEYVFQKMTAMKY---T--PSFITYECIITMYGYCDNVSRAREIFDELSKLGK-----DMKVSTLNAMLEAYCMNGLPTE 279 (366)
Q Consensus 210 a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~ 279 (366)
|...+++...... . ....++..+...+...|++++|...++...+... .....++..+...|...|++++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 361 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER 361 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence 9999998875421 1 1146788888999999999999999998876421 1124577888999999999999
Q ss_pred HHHHHHHhhhC
Q 017743 280 ADLLFENSHNM 290 (366)
Q Consensus 280 a~~~~~~~~~~ 290 (366)
|...+++..+.
T Consensus 362 A~~~~~~al~~ 372 (411)
T 4a1s_A 362 ALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988774
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-12 Score=105.52 Aligned_cols=218 Identities=8% Similarity=0.007 Sum_probs=159.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 017743 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQ-------ARNV-------DQVNALFKELHESILAPDIYTYNGVMDAYG 132 (366)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 132 (366)
++|...|++..... +.+...|..++..+.. .|++ ++|..+|++.++.-.+-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56666666665422 4566677777766653 4775 888888888887311334567888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCcHhH
Q 017743 133 KNGMIKEMESVLSRMKSNQCKPD-II-TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG-KARLQGK 209 (366)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~ 209 (366)
+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+... ++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 889999999999988875 333 33 788888888888999999999998887533 34444543333322 3688999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG-KDM--KVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++......|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998887753 3457788888888888899999999999988863 343 467788888888888999999999888
Q ss_pred hhhC
Q 017743 287 SHNM 290 (366)
Q Consensus 287 ~~~~ 290 (366)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-12 Score=109.03 Aligned_cols=312 Identities=10% Similarity=0.003 Sum_probs=214.3
Q ss_pred cccCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhc--CCCCCh--hhHHHHHHHHhhchHHHHHHH---------HHH
Q 017743 6 WYIADTGIYSKLIAVM--GKKGQTRLAMWLFSEMRNS--GCRPDP--SVYNALITAHLHTRDKAKALA---------KAL 70 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~~~~~--g~~p~~--~~~~~ll~~~~~~~~~~~~~~---------~a~ 70 (366)
...|+..+-+.+-..| .+.+++++|.++++++.+. .++.|. ..|-.++..-... -.+.+. ...
T Consensus 5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~--~~~~~~~~~~~~~~~~~~ 82 (378)
T 3q15_A 5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQL--MLDYLEPGKTYGNRPTVT 82 (378)
T ss_dssp -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHH--HHHTCCC--------CHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--HHhhcCcccccccccchH
Confidence 3467777777787787 8999999999999998653 222232 2233333221100 011111 122
Q ss_pred HHHHHHhcCCCCCC-C-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCCHHHH
Q 017743 71 GYFQKMKGMERCKP-N-I---VTYNILLRACAQARNVDQVNALFKELHESIL-APD----IYTYNGVMDAYGKNGMIKEM 140 (366)
Q Consensus 71 ~~~~~~~~~~~~~~-~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a 140 (366)
+.++.+.... .+ + . ..+......+...|++++|...|++..+... .++ ..++..+...|...|++++|
T Consensus 83 ~~l~~i~~~~--~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A 160 (378)
T 3q15_A 83 ELLETIETPQ--KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVS 160 (378)
T ss_dssp HHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhccC--CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHH
Confidence 4555544211 11 1 1 1233445567789999999999999886421 122 45678888999999999999
Q ss_pred HHHHHHHHHC----CC-C-CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHhcCcHhH
Q 017743 141 ESVLSRMKSN----QC-K-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK----EK-PTLPTFNSMIINYGKARLQGK 209 (366)
Q Consensus 141 ~~~~~~~~~~----~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~~~~~~ 209 (366)
...+.+..+. +- . ....++..+...|...|++++|.+.|++..+.. .. ....++..+...|...|++++
T Consensus 161 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 240 (378)
T 3q15_A 161 MYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240 (378)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 9999987643 11 1 125577888999999999999999999886531 11 123567788899999999999
Q ss_pred HHHHHHHHHh-----CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCC---h
Q 017743 210 AEYVFQKMTA-----MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK----DMKVSTLNAMLEAYCMNGL---P 277 (366)
Q Consensus 210 a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~---~ 277 (366)
|...+++..+ .. +....++..+...+.+.|++++|...++...+... ......+..+...+...++ +
T Consensus 241 A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999886 43 33367888999999999999999999999876421 2223455666667777788 7
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 278 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.+|+..+++... .......+..+...|...|++++|...|++..+
T Consensus 320 ~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 320 HDLLSYFEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778877776321 122245667888999999999999999998865
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-13 Score=112.58 Aligned_cols=238 Identities=9% Similarity=-0.004 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHES----ILA-PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC-KPD----II 157 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 157 (366)
.+..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|...+.+..+... .++ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444444555555555555555544322 101 1123444455555555555555555555432100 001 22
Q ss_pred HHHHHHHHHhccCC--------------------hhHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCcHhHHHH
Q 017743 158 TFNLLIDSYGKRQA--------------------FDKMEQVFKSLMHS----KEK-PTLPTFNSMIINYGKARLQGKAEY 212 (366)
Q Consensus 158 ~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~ 212 (366)
++..+...+...|+ +++|.+.+++.... +.. ....++..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45555555666666 66666666554321 111 113356666677777777777777
Q ss_pred HHHHHHhC----CCC-CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCChhHHHH
Q 017743 213 VFQKMTAM----KYT-PSFITYECIITMYGYCDNVSRAREIFDELSKLGKD-M----KVSTLNAMLEAYCMNGLPTEADL 282 (366)
Q Consensus 213 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~ 282 (366)
.+++..+. +.. ....++..+...+...|++++|...++...+.... . ...++..+...+...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77766543 101 11236777777888888888888888776543111 0 14567778888888899999988
Q ss_pred HHHHhhhCC----C-CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 283 LFENSHNMG----V-TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 283 ~~~~~~~~~----~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.+++..+.. - .....++..+...+...|++++|...+++..+.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 888776431 0 111446778888889999999999999888763
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-13 Score=112.41 Aligned_cols=274 Identities=12% Similarity=0.023 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC---CC-
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-----PSVYNALITAHLHTRDKAKALAKALGYFQKMKGM---ER- 81 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-----~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~---~~- 81 (366)
...+......+...|++++|...|+++.+.. |+ ...+..+...+... |++++|+..+++.... .+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYL----HDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhhcccc
Confidence 3455667788899999999999999998863 43 24555666666644 4488888887765431 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCC--------------------
Q 017743 82 CKPNIVTYNILLRACAQARNVDQVNALFKELHESIL-APD----IYTYNGVMDAYGKNGM-------------------- 136 (366)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~-------------------- 136 (366)
.+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 122356788899999999999999999998876421 112 3377888889999999
Q ss_pred HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCc
Q 017743 137 IKEMESVLSRMKSN----QC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPT----LPTFNSMIINYGKARL 206 (366)
Q Consensus 137 ~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~ 206 (366)
+++|.+.+++.... +. .....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 99999998876532 11 11245677888899999999999999998865311 111 3377888889999999
Q ss_pred HhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCC
Q 017743 207 QGKAEYVFQKMTAM----KYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLGK-----DMKVSTLNAMLEAYCMNGL 276 (366)
Q Consensus 207 ~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~ 276 (366)
+++|...+++.... +..+ ...++..+...+...|++++|...++...+... .....++..+...|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999987643 1111 145778888999999999999999998765311 1124577889999999999
Q ss_pred hhHHHHHHHHhhhC
Q 017743 277 PTEADLLFENSHNM 290 (366)
Q Consensus 277 ~~~a~~~~~~~~~~ 290 (366)
+++|...+++..+.
T Consensus 319 ~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 319 HDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=113.56 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC---
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-------GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM--- 79 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~--- 79 (366)
+..++..+...+...|++++|..+|+++.+. ........+..+...+... |++++|+..+++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ----NKYKDAANLLNDALAIREK 101 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHH
Confidence 4667888999999999999999999998763 1111233444555555533 3366666666665432
Q ss_pred ---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 80 ---ERCKPNIVTYNILLRACAQARNVDQVNALFKELHES------IL-APDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149 (366)
Q Consensus 80 ---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 149 (366)
...+....++..+...+...|++++|...++++.+. +. +....++..+...+...|++++|.+.++++.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111223456667777777777777777777776653 11 11234455666666777777777777766654
Q ss_pred C------CCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 150 N------QCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 150 ~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
. +..| ...++..+...+...|++++|.+.++++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 1111 234555666666666666666666666654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-10 Score=110.25 Aligned_cols=251 Identities=14% Similarity=0.154 Sum_probs=189.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCH
Q 017743 23 KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102 (366)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (366)
..+++++|.++.++. -+..+|..+-.++. ..|++++|++.|.+. .|...|..++.++.+.|++
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql----~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQL----QKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNW 1150 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHH----hCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCH
Confidence 556677777776644 24677888877777 455599999999663 4777888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 017743 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (366)
++|.+.+...++.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1151 EEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1151 EELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 99999999887764 34444456899999999988644443 2 356677888999999999999999999985
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH
Q 017743 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262 (366)
Q Consensus 183 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 262 (366)
..|..+..++.+.|+++.|.+.+++. .+..+|..+..+|...|++..|......+ ..++.
T Consensus 1222 ---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~d 1281 (1630)
T 1xi4_A 1222 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHAD 1281 (1630)
T ss_pred ---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHH
Confidence 37899999999999999999999876 34578888888999999998888776542 23677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh--hchHHHHHHHHH
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK--ANMKELVQKLLK 320 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~ 320 (366)
.+..++..|.+.|.+++|+.+++...... +-....|.-+...+++ -++..++.++|.
T Consensus 1282 eLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1282 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 78899999999999999999998776544 2234455555555544 233444444433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-11 Score=95.84 Aligned_cols=210 Identities=9% Similarity=0.026 Sum_probs=155.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 017743 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198 (366)
Q Consensus 119 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 198 (366)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|++.|++..+..+ .+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 456788888889999999999999999988875436777777788999999999999999999988532 3567888888
Q ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 017743 199 INYGKARLQGKAEYVFQKMTAMKYTPSF-------ITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTLNAMLEA 270 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 270 (366)
..+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|+...+.++.. +...+..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 99999999999999999988764 3334 457778888888999999999999988863210 24667777777
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 017743 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 340 (366)
|...| ...++++...+ ..+...|.... ....+.+++|...+++..+ +.|+......++..
T Consensus 163 ~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 76543 34455555543 23445554433 3456778999999999988 45766555554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.1e-12 Score=94.52 Aligned_cols=164 Identities=10% Similarity=0.024 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (366)
..+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455556666666677776666666553 22345666666666667777777777777666543 34456666677777
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHH
Q 017743 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 316 (366)
...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777665433 56667777777777777777777777776654 335677777777777778888887
Q ss_pred HHHHHHHh
Q 017743 317 KLLKRMEQ 324 (366)
Q Consensus 317 ~~~~~m~~ 324 (366)
..+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777665
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-10 Score=101.33 Aligned_cols=192 Identities=9% Similarity=-0.001 Sum_probs=129.3
Q ss_pred ChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CChhHHHHHHHHHHhcCCCCCHH
Q 017743 120 DIYTYNGVMDAYGKNG---MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR----QAFDKMEQVFKSLMHSKEKPTLP 192 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~ 192 (366)
+...+..+...|...| +.++|++.|++..+.|. ++...+..+...|... +++++|.+.|++.. . -+..
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~ 249 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPA 249 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHH
Confidence 4447777777777788 77888888888877763 3555555666666554 67888888888876 2 2444
Q ss_pred HHHHHHHH-H--HhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-----cHHHHHHHHHHHHhCCCCCCHHHH
Q 017743 193 TFNSMIIN-Y--GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-----NVSRAREIFDELSKLGKDMKVSTL 264 (366)
Q Consensus 193 ~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~ 264 (366)
.+..+... + ...+++++|..+|++..+.| +...+..|...|. .| ++++|...|+... .| ++..+
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~ 321 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAAD 321 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHH
Confidence 55555555 3 45678888888888887765 4556666666665 44 7888888888777 33 56667
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----hchHHHHHHHHHHHHhCCC
Q 017743 265 NAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK----ANMKELVQKLLKRMEQNGI 327 (366)
Q Consensus 265 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~ 327 (366)
..|...|.. ..++++|...|++..+.|. ......|...|.. ..+.++|..+|+...+.|.
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 777766665 3378888888888877663 3344455555543 3477788888887777664
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-10 Score=99.25 Aligned_cols=273 Identities=11% Similarity=0.007 Sum_probs=170.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChh----hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC---
Q 017743 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS----VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN--- 85 (366)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~----~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 85 (366)
.+......+...|++++|...++.........+.. .++.+-..+. ..|++++|...+++......-.++
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----CKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34445566778899999999999987653222222 2233333333 445577888777765432111122
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----
Q 017743 86 -IVTYNILLRACAQARNVDQVNALFKELHESI----LA--P-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK---- 153 (366)
Q Consensus 86 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---- 153 (366)
..++..+...+...|++++|...+++..+.. .. | ....+..+...+...|++++|...+++.......
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 2335667778888899999998888876532 11 2 2344566777888889999998888887653221
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--HHHHH----HHHHHHHhcCcHhHHHHHHHHHHhCCCCC---
Q 017743 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT--LPTFN----SMIINYGKARLQGKAEYVFQKMTAMKYTP--- 224 (366)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~--- 224 (366)
....++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 1235566777778888888888888888765311111 11111 22334667888888888888776543211
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKL----GKDMKV-STLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
....+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1234566677777888888888888776542 211122 2555666777778888888887777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-11 Score=93.17 Aligned_cols=163 Identities=17% Similarity=0.080 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (366)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555555555555555555544332 2234444444555555555555555555544432 223444444444444
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 247 (366)
.. |++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~-----------------------------------~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 88 QV-----------------------------------QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp HH-----------------------------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred Hh-----------------------------------cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 44 44444444444444332 2234444445555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.++.+.+.... +...+..+...+...|++++|...+++..+
T Consensus 132 ~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 132 SFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555444322 344555555555555555555555555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-11 Score=93.37 Aligned_cols=208 Identities=7% Similarity=-0.040 Sum_probs=155.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
+.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|++.+++..+... .+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 3456788888899999999999999999999876446778888888999999999999999999988743 367788889
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTL-------PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP--SFITYECII 233 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 233 (366)
..++...|++++|...+++..+..+ .+. ..|..+...+...|++++|...+++..+.. +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 9999999999999999999988532 344 457778888889999999999999998863 22 356777777
Q ss_pred HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 017743 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 302 (366)
.++...| ..+++.+...+.. +...|..... ...+.+++|...+++..+..+. +..+...+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 7775444 3445555555322 4445544433 3456789999999998886422 44444433
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.2e-12 Score=114.47 Aligned_cols=165 Identities=9% Similarity=0.013 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 017743 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200 (366)
Q Consensus 121 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 200 (366)
..+++.+..++.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|++.|++.++.. +.+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556666666666666666666666666542 2245566666666666666666666666665542 2245566666666
Q ss_pred HHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 017743 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 280 (366)
+...|++++|.+.|++..+.. +-+...|..+..++...|++++|...|++..+..+. +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 666666666666666665543 233556666666666666666666666666655433 455566666666666666666
Q ss_pred HHHHHHhhh
Q 017743 281 DLLFENSHN 289 (366)
Q Consensus 281 ~~~~~~~~~ 289 (366)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-11 Score=106.63 Aligned_cols=282 Identities=15% Similarity=0.130 Sum_probs=176.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 017743 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96 (366)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (366)
+...+.+.|++++|.++|+...+.|. ++ .+..+-..+...+ ...+.++|+..|++..+ . +...+..+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~--A~~~Lg~~y~~~g-~~~d~~~A~~~~~~A~~----~-~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SE--AQVGLADIQVGTR-DPAQIKQAEATYRAAAD----T-SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CT--GGGTCC----------------------------------CHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHccC-CCCCHHHHHHHHHHHHh----C-CHHHHHHHHHHH
Confidence 56777888999999999999877652 23 2222333333222 12234888888888774 2 555666666655
Q ss_pred HhcC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-----------------------------------
Q 017743 97 AQAR-----NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM----------------------------------- 136 (366)
Q Consensus 97 ~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------------------------------- 136 (366)
...+ ++++|...|++..+.|.. ..+..|...|...+.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTC
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 5554 678888888888776522 244444444443322
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----C
Q 017743 137 ----IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ---AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA----R 205 (366)
Q Consensus 137 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~ 205 (366)
.+.+..++..... .+...+..+...|...| +.++|++.|++..+.|. ++...+..+...|... +
T Consensus 157 ~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCC
Confidence 2222223332222 23337777888888888 89999999999988754 4555556666666554 6
Q ss_pred cHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-h--hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----Ch
Q 017743 206 LQGKAEYVFQKMTAMKYTPSFITYECIITM-Y--GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-----LP 277 (366)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~ 277 (366)
++++|..+|++.. . -+...+..+... + ...+++++|...|+...+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 8999999999887 3 344555556555 3 45889999999999998877 6777888888887 55 99
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----hchHHHHHHHHHHHHhCCC
Q 017743 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTK----ANMKELVQKLLKRMEQNGI 327 (366)
Q Consensus 278 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~ 327 (366)
++|.+.|++.. .| +...+..|...|.. ..+.++|..+|++..+.|.
T Consensus 304 ~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 304 KAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 99999999887 33 67777777777766 3489999999999888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-11 Score=112.48 Aligned_cols=169 Identities=8% Similarity=0.024 Sum_probs=148.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
+.+..+|+.+...+.+.|++++|.+.|++.++.. +-+..+++.+..+|.+.|++++|++.|++..+.. +-+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4457889999999999999999999999999874 3367889999999999999999999999998864 2368899999
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (366)
..++...|++++|++.|++.++.. +.+...|..+...+...|++++|+..|++..+.. +-+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 999999999999999999998863 3368899999999999999999999999999874 44578899999999999999
Q ss_pred HHHHHHHHHHHhC
Q 017743 243 SRAREIFDELSKL 255 (366)
Q Consensus 243 ~~a~~~~~~~~~~ 255 (366)
++|.+.++++.+.
T Consensus 162 ~~A~~~~~kal~l 174 (723)
T 4gyw_A 162 TDYDERMKKLVSI 174 (723)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887763
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-11 Score=104.07 Aligned_cols=226 Identities=8% Similarity=-0.055 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-----ChhhHHHHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKP----NIVTYNILLRACAQARNVDQVNALFKELHESILA-P-----DIYTYNGVMDAY 131 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~~ll~~~ 131 (366)
..|++++|+..|++......-.+ ...++..+...+...|+++.|...+++..+.-.. + ...+++.+..+|
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 44569999999999875311112 3467889999999999999999999998764211 1 235678888999
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHhc----CC-CCCHHHHHHHHHHH
Q 017743 132 GKNGMIKEMESVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KE-KPTLPTFNSMIINY 201 (366)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~ 201 (366)
...|++++|.+.+++..+. +-. ....++..+..+|...|++++|.+.+++..+. +. +....++..+...+
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 9999999999999987643 111 11247888999999999999999999998772 23 33467788899999
Q ss_pred HhcCcHhHHHHHHHHHHhC----CCCCCHHHHHHHHHHhhccCc---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 202 GKARLQGKAEYVFQKMTAM----KYTPSFITYECIITMYGYCDN---VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|..+++.... .......+..+...|...
T Consensus 275 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~ 352 (383)
T 3ulq_A 275 YKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVAKYYHER 352 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHC
Confidence 9999999999999987753 112223346778888888998 6777777766521 112345677899999999
Q ss_pred CChhHHHHHHHHhhh
Q 017743 275 GLPTEADLLFENSHN 289 (366)
Q Consensus 275 g~~~~a~~~~~~~~~ 289 (366)
|++++|...+++..+
T Consensus 353 g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 353 KNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.4e-10 Score=94.56 Aligned_cols=284 Identities=10% Similarity=0.015 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNI----VTYNILLRACAQARNVDQVNALFKELHESILA-PD----IYTYNGVMDAYG 132 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~ 132 (366)
..|++++|...+++...... ..+. .+++.+...+...|++++|.+.+++....... .+ ..++..+...+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34558899999888765321 1222 25667778888999999999999988764211 12 123566778889
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC----CHHHHHHHHHHH
Q 017743 133 KNGMIKEMESVLSRMKSN----QCK--P-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP----TLPTFNSMIINY 201 (366)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~ 201 (366)
..|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ...++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 999999999999987643 222 2 24456678888999999999999999987643221 235677788889
Q ss_pred HhcCcHhHHHHHHHHHHhCCCCCC--HHHHH----HHHHHhhccCcHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHH
Q 017743 202 GKARLQGKAEYVFQKMTAMKYTPS--FITYE----CIITMYGYCDNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYC 272 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~ 272 (366)
...|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ....+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999998865311111 11111 23345778999999999999887654321 1335677888999
Q ss_pred hcCChhHHHHHHHHhhhC----CCCCCH-HHHHHHHHHHHhhchHHHHHHHHHHHHhC----CCC----CChhHHHHHHH
Q 017743 273 MNGLPTEADLLFENSHNM----GVTPDS-STYKLLYKAYTKANMKELVQKLLKRMEQN----GIV----PNKRFFLEALE 339 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~----~~~~~~~~ll~ 339 (366)
..|++++|...++..... |..++. .++..+..++...|+.++|...+++..+. |.. ........+++
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~~~~ll~ 344 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLR 344 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHHHHHHHH
Confidence 999999999999887543 222222 36677788899999999999999887642 322 12233455666
Q ss_pred Hhhcccc
Q 017743 340 TFSSSLA 346 (366)
Q Consensus 340 ~~~~~~~ 346 (366)
.+.....
T Consensus 345 ~~~~~~~ 351 (373)
T 1hz4_A 345 QLIQLNT 351 (373)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 6655544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.7e-12 Score=102.15 Aligned_cols=228 Identities=14% Similarity=0.105 Sum_probs=159.7
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHH
Q 017743 97 AQARNVDQVNALFKELHES-------ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN------QC-KPDIITFNLL 162 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 162 (366)
...|++++|...+++..+. ..+....++..+...+...|++++|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777666542 22334667888999999999999999999998754 22 2346678889
Q ss_pred HHHHhccCChhHHHHHHHHHHhcC-----C--CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC------CCCC-CHHH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSK-----E--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM------KYTP-SFIT 228 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 228 (366)
...|...|++++|.+.+++..... . +....++..+...+...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999987641 1 223567888899999999999999999998765 1123 3567
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChhHH------HHHHHHhhhCCCCC
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKL-------GKDM-KVSTLNAMLEAYCMNGLPTEA------DLLFENSHNMGVTP 294 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~g~~~~a------~~~~~~~~~~~~~p 294 (366)
+..+..++...|++++|...++...+. ...+ ....+..+...+...+....+ ...+...... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 889999999999999999999988753 1111 233344444444443333332 2222222211 122
Q ss_pred CHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
...++..+...|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567888999999999999999999988763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=100.68 Aligned_cols=224 Identities=16% Similarity=0.100 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCC
Q 017743 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES------IL-APDIYTYNGVMDAYGKNGM 136 (366)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~ 136 (366)
..+++|++++.+... ...+....++..+...+...|++++|...++++.+. +- +....++..+...+...|+
T Consensus 22 ~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 22 PLCKQALEDLEKTSG-HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHHC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 347888888888764 212334678899999999999999999999998865 21 2245678889999999999
Q ss_pred HHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHH
Q 017743 137 IKEMESVLSRMKSN------Q-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS------KEKP-TLPTFNSMIINYG 202 (366)
Q Consensus 137 ~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~ 202 (366)
+++|.+.+.+..+. . .+....++..+...+...|++++|...+++.... +..| ...++..+...+.
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999998764 1 1234677888999999999999999999998764 1122 3567888999999
Q ss_pred hcCcHhHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHhhccCc------HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 203 KARLQGKAEYVFQKMTAM-------KYTPS-FITYECIITMYGYCDN------VSRAREIFDELSKLGKDMKVSTLNAML 268 (366)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~li 268 (366)
..|++++|...+++..+. ...+. ...+..+.......+. +..+...++..... ......++..+.
T Consensus 181 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la 259 (283)
T 3edt_B 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLG 259 (283)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 999999999999988753 11122 2233333333322222 22332222222111 112456788899
Q ss_pred HHHHhcCChhHHHHHHHHhhh
Q 017743 269 EAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~ 289 (366)
..|...|++++|..++++..+
T Consensus 260 ~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 260 ALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-10 Score=96.71 Aligned_cols=224 Identities=9% Similarity=0.005 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-----ChhhHHHHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPN----IVTYNILLRACAQARNVDQVNALFKELHESILA-P-----DIYTYNGVMDAY 131 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~~ll~~~ 131 (366)
..|++++|+..|++......-.++ ..++..+...|...|+++.|...+++..+.... + ...+++.+..+|
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 445699999999988753211232 457888999999999999999999988764211 1 245678888999
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHh-----cCCCCCHHHHHHHHHHH
Q 017743 132 GKNGMIKEMESVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-----SKEKPTLPTFNSMIINY 201 (366)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~ 201 (366)
...|++++|.+.+.+..+. +.. ....++..+..+|...|++++|.+.+++... .. +....++..+...+
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~ 271 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTL 271 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHH
Confidence 9999999999999987653 111 1245678889999999999999999999876 32 23377888899999
Q ss_pred HhcCcHhHHHHHHHHHHhCC----CCCCHHHHHHHHHHhhccCc---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 017743 202 GKARLQGKAEYVFQKMTAMK----YTPSFITYECIITMYGYCDN---VSRAREIFDELSKLGKDM-KVSTLNAMLEAYCM 273 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 273 (366)
.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|...++. .+..+ ....+..+...|..
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHH
Confidence 99999999999999987642 12224456777777778888 6777776665 22222 24566789999999
Q ss_pred cCChhHHHHHHHHhhh
Q 017743 274 NGLPTEADLLFENSHN 289 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~ 289 (366)
.|++++|...|++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-10 Score=94.24 Aligned_cols=167 Identities=8% Similarity=-0.039 Sum_probs=82.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 017743 93 LRACAQARNVDQVNALFKELHES----ILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167 (366)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (366)
...|...|++++|...|.+..+. |-+++ ..+|+.+..+|.+.|++++|+..+++..+...
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~--------------- 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT--------------- 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------
Confidence 55566666666666666665543 11111 34555555566666666666665555443210
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHhCCC---CC-C-HHHHHHHHHHhhccCc
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAMKY---TP-S-FITYECIITMYGYCDN 241 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~---~~-~-~~~~~~l~~~~~~~~~ 241 (366)
..|+... -..++..+...|... |++++|...|++..+... .+ . ..++..+...+...|+
T Consensus 109 ~~g~~~~---------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 109 HRGQFRR---------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HTTCHHH---------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HcCCHHH---------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 0000000 022344445555553 555555555555443210 00 0 2345555666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 242 VSRAREIFDELSKLGKDMKV------STLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
+++|...|+...+..+.... ..|..+..++...|++++|...|++..+
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666666554322111 1345555566666666666666666654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-09 Score=87.82 Aligned_cols=190 Identities=12% Similarity=0.032 Sum_probs=114.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC-HHHH
Q 017743 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD---IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT-LPTF 194 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~ 194 (366)
+...+..+...+.+.|++++|...|+++.+.... + ...+..+..++...|++++|...|++.+...+. |. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4455666666777777777777777777665321 2 456666677777777777777777777664321 11 3445
Q ss_pred HHHHHHHHh--------cCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 017743 195 NSMIINYGK--------ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266 (366)
Q Consensus 195 ~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 266 (366)
..+..++.. .|++++|...|+++.+.. +.+......+.. +..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 556666666 667777777777666542 111111111100 0000000 0112355
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhh----------chHHHHHHHHHHHHhCCCCCCh
Q 017743 267 MLEAYCMNGLPTEADLLFENSHNMGVTP--DSSTYKLLYKAYTKA----------NMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
+...|...|++++|+..|+++.+..... ....+..+..++... |++++|...|+++.+. .|+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 6778888888888888888887653221 245677777777766 8888899999888874 3554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-09 Score=86.41 Aligned_cols=144 Identities=11% Similarity=0.065 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 017743 105 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183 (366)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (366)
|...++++...+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444332 23333334444455555555555555555443322 1234444444555555555555555555554
Q ss_pred hcCCCC-----CHHHHHHHHHHH--HhcC--cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 184 HSKEKP-----TLPTFNSMIINY--GKAR--LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 184 ~~~~~~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
+. .| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 22 123333333331 1112 455555555554433 2332222222224445555555555554433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=5e-10 Score=91.74 Aligned_cols=97 Identities=9% Similarity=-0.085 Sum_probs=59.0
Q ss_pred hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C--
Q 017743 48 VYNALITAHLHTRDKAKALAKALGYFQKMKGM---ERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAP-D-- 120 (366)
Q Consensus 48 ~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-- 120 (366)
.|......+. ..|++++|+..|.+.... .+.++. ..+|+.+..+|...|++++|...+++.++..... +
T Consensus 39 ~~~~a~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~ 114 (292)
T 1qqe_A 39 LCVQAATIYR----LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR 114 (292)
T ss_dssp HHHHHHHHHH----HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3444444444 345588888888877542 111222 5688999999999999999999999887642100 1
Q ss_pred --hhhHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 017743 121 --IYTYNGVMDAYGKN-GMIKEMESVLSRMK 148 (366)
Q Consensus 121 --~~~~~~ll~~~~~~-~~~~~a~~~~~~~~ 148 (366)
..+++.+...|... |++++|+..|++..
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22444445555553 55555555555543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-09 Score=87.30 Aligned_cols=188 Identities=12% Similarity=-0.050 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD---IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PDII 157 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 157 (366)
+.+...+..+...+...|++++|...|+++.+.. +.+ ...+..+..++.+.|++++|...|+...+.... ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4567788888899999999999999999999864 223 567888899999999999999999999886321 2245
Q ss_pred HHHHHHHHHhc--------cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHH
Q 017743 158 TFNLLIDSYGK--------RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 158 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
.+..+..++.. .|++++|...|++++...+. +......+... ..+.. -....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~----~~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRA----KLARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHH----HHHHHH
Confidence 67778888888 99999999999999885332 22222221110 00000 001124
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CChhHHHHHHHHhhhC
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMN----------GLPTEADLLFENSHNM 290 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 290 (366)
..+...+...|++++|...|+.+.+..+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 566677778888888888888877654332 245666677777755 7778888888888765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-09 Score=78.05 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33333444444444444444444433322 1123333444444444444444444444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-09 Score=78.22 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (366)
..+..+...+...|++++|..+++++.... +.+...+..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 356778889999999999999999998763 3467888889999999999999999999998765 45677888999999
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
...|++++|...++.+.+..+. +...+..+...+...|++++|...++++....
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 9999999999999999887544 67888999999999999999999999987653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-09 Score=84.56 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHhccCChhHHHHHHHHHHhc
Q 017743 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD-IITFNL----------------LIDSYGKRQAFDKMEQVFKSLMHS 185 (366)
Q Consensus 123 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~ 185 (366)
.+......+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|+..|++.++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444455666778888888888877765 232 333333 444444444444444444444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 186 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
. +.+...+..+...+...|++++|...|++..+
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 12334444444444444444444444444444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-09 Score=87.20 Aligned_cols=243 Identities=10% Similarity=-0.046 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 017743 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143 (366)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 143 (366)
|.+..++.-..++.. ..+ ...-.-+.+++...|++... ....|....+..+...+ ..+ ++..
T Consensus 27 G~yq~~i~e~~~~~~---~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 27 GNFVQCLQEIEKFSK---VTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp TCHHHHTHHHHTSSC---CCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred hHHHHHHHHHHhcCc---cch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 336666653333322 122 23334456777777776531 12233333444443333 322 6778
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC
Q 017743 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222 (366)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 222 (366)
|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 88777665 45566667888889999999999999999877654 236778888999999999999999999999875
Q ss_pred CC-----CHHHHHHHHHHhh--c--cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC--
Q 017743 223 TP-----SFITYECIITMYG--Y--CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-- 291 (366)
Q Consensus 223 ~~-----~~~~~~~l~~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-- 291 (366)
.| +..+...+..++. . .++..+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 45 3556666665532 2 348999999999987753 343344445558899999999999998766531
Q ss_pred -------CCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhH
Q 017743 292 -------VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333 (366)
Q Consensus 292 -------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 333 (366)
-+-|+.++..+|......|+ +|.+++.++.+. .|+...
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChH
Confidence 03367777677777777787 888999999884 466543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.1e-08 Score=88.96 Aligned_cols=193 Identities=11% Similarity=-0.022 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHhccCChhHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC---------CCC
Q 017743 155 DIITFNLLIDSYGKRQAFDKME-QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---------YTP 224 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~ 224 (366)
+...|...+..+...|+.+.|. ++|++.... .+.+...|...+....+.|+++.|..+|+.+.... ..|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 3444444455555667777775 888888764 44566667777777778888888888888877531 013
Q ss_pred C------------HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHhhhCC
Q 017743 225 S------------FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN-GLPTEADLLFENSHNMG 291 (366)
Q Consensus 225 ~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~ 291 (366)
+ ..+|...+....+.|..+.|..+|....+.-.......|...+..-.+. ++.+.|.++|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 1 2357777777777788888888888887651112334444333333333 4578888888887775
Q ss_pred CCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCC--ChhHHHHHHHHhhcccccCC
Q 017743 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP--NKRFFLEALETFSSSLAGSQ 349 (366)
Q Consensus 292 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~ 349 (366)
++-+...+...++.....|+.+.|..+|++.......+ ....|...++--...|....
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 33456666777777778888888888888888754322 22344444444444454433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-09 Score=83.29 Aligned_cols=162 Identities=11% Similarity=0.007 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCC
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG----------------VMDAYGKNGMIKEMESVLSRMKSNQ 151 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~ 151 (366)
.+......+...|++++|...|++..+.. +-+...+.. +..++.+.|++++|+..|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 33444455666777777777777766653 113344555 6666777777777777777766653
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc--HhHHHHHHHHHHhCCCCCCHHHH
Q 017743 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL--QGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
+.+...+..+..++...|++++|...|++.++.. +.+..++..+...|...|+ ...+...++.... ..|....+
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 2256666677777777777777777777776642 2345566666665544432 2233333333321 11222222
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
.....++...|++++|...|++..+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2233333444555555555555554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-07 Score=77.52 Aligned_cols=220 Identities=7% Similarity=-0.043 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hcc---CC
Q 017743 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG--MIKEMESVLSRMKSNQCKPDIITFNLLIDSY----GKR---QA 171 (366)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 171 (366)
..++|+++++.++... +-+..+|+.--.++...+ +++++++.++.+.....+ +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3467888888888764 224556777777777777 888888888888876433 555555444433 333 67
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHh--HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc------HH
Q 017743 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG--KAEYVFQKMTAMKYTPSFITYECIITMYGYCDN------VS 243 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 243 (366)
+++++++++.+.+.. +-+..+|+.-...+.+.|.++ ++++.+.++.+.. +-+...|+.-...+...++ ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 888999998888763 347778887777777788887 8888888888775 4567777766666666666 88
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHhhhCC--CCCCHHHHHHHHHHHHhhchHHHHHHHHH
Q 017743 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE-ADLLFENSHNMG--VTPDSSTYKLLYKAYTKANMKELVQKLLK 320 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (366)
++++.++.+....+. |...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..++..+.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 999999998888766 88999988888888887554 556777766543 13478889999999999999999999999
Q ss_pred HHHhC
Q 017743 321 RMEQN 325 (366)
Q Consensus 321 ~m~~~ 325 (366)
.+.+.
T Consensus 283 ~l~~~ 287 (306)
T 3dra_A 283 LLKSK 287 (306)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 98763
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-07 Score=85.84 Aligned_cols=250 Identities=11% Similarity=0.058 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHH
Q 017743 87 VTYNILLRACAQAR-------NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME-SVLSRMKSNQCKPDIIT 158 (366)
Q Consensus 87 ~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 158 (366)
..|...+..--..+ ..+.+..+|++++.. .+-+...|...+..+...|+.++|. ++|+..... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 34555555443332 134566788888876 3557788888888888899999997 999999875 4556777
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCC---------CCC------------HHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKE---------KPT------------LPTFNSMIINYGKARLQGKAEYVFQKM 217 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~~ 217 (366)
|...+...-+.|+++.|.++|+.+++... .|+ ...|...+....+.|..+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888899999999999999876410 131 346777888888889999999999999
Q ss_pred HhC-CCCCCHHHHHHHHHHhhcc-CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-
Q 017743 218 TAM-KYTPSFITYECIITMYGYC-DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP- 294 (366)
Q Consensus 218 ~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p- 294 (366)
.+. + .+....|...+..-.+. ++.+.|..+|+...+.-. -+...|...+......|+.+.|..+|++.......+
T Consensus 461 ~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 461 RRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 876 3 22333443333332333 558999999999988733 367788899998889999999999999998865322
Q ss_pred -CHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 017743 295 -DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342 (366)
Q Consensus 295 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 342 (366)
....|...++.-.+.|+.+.+.++.+++.+. .|+......+.+-|.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhc
Confidence 3467888888888999999999999999984 356555555555553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-10 Score=83.01 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=92.9
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (366)
|...+...|++++|+..++..... .+.+...+..+...|.+.|++++|...|++..+.. +-+..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~-~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS-PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS-HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhccc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 344556667777777777776542 11123445566777777778888887777777654 4456777777777777788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHhhhCCCCCCHHHHHHHHHHHHhhc
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL-FENSHNMGVTPDSSTYKLLYKAYTKAN 310 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~ 310 (366)
+++|...|+...+.++. +...|..+...|.+.|++++|.+. +++..+..+ -+..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 88888887777776544 567777777777777777665554 466666432 24556655555554444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-09 Score=97.45 Aligned_cols=173 Identities=6% Similarity=-0.074 Sum_probs=136.4
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 017743 132 GKNGMIKEMESVLSRMK--------SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203 (366)
Q Consensus 132 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 203 (366)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67889999999999887 432 3456778888888999999999999999988753 3467788888888999
Q ss_pred cCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 017743 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 283 (366)
.|++++|...|++..+.. +.+...+..+..++...|++++ ...|+...+.++. +...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988764 3456788888888999999999 9999998887655 678888899999999999999999
Q ss_pred HHHhhhCCCCCC-HHHHHHHHHHHHhhch
Q 017743 284 FENSHNMGVTPD-SSTYKLLYKAYTKANM 311 (366)
Q Consensus 284 ~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 311 (366)
|++..+.+ |+ ...+..+..++...++
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 99888754 44 5667777777655443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.3e-10 Score=101.23 Aligned_cols=185 Identities=8% Similarity=-0.072 Sum_probs=150.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 97 AQARNVDQVNALFKELH--------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
...|++++|.+.+++.. +. .+.+...+..+..++.+.|++++|++.|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 43 24466788889999999999999999999998864 3377889999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 248 (366)
.|++++|.+.|++..+... .+...+..+..++.+.|++++ ...|++..+.+ +.+...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999988633 367788899999999999999 99999998875 45678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHh
Q 017743 249 FDELSKLGKDMKVSTLNAMLEAYCMNGL--------PTEADLLFENS 287 (366)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~li~~~~~~g~--------~~~a~~~~~~~ 287 (366)
|++..+.++. +...+..+..++...++ +++|.+.+..+
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999887544 46777778777766554 44555555444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-08 Score=79.50 Aligned_cols=176 Identities=7% Similarity=-0.034 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----CHHHHHHH
Q 017743 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG----MIKEMESV 143 (366)
Q Consensus 68 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~ 143 (366)
+|++.|++..+ .-+...+..+...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 34555555554 2455666666666666666777777666666654 44555555555555 4 66666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCcHhHHHHHH
Q 017743 144 LSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGK----ARLQGKAEYVF 214 (366)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~ 214 (366)
|++..+.| +...+..+...|.. .+++++|.+.|++..+.+.. .....+..+...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66665543 44555555555555 56666666666666554321 014455555555555 45566666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhcc------CcHHHHHHHHHHHHhCC
Q 017743 215 QKMTAMKYTPSFITYECIITMYGYC------DNVSRAREIFDELSKLG 256 (366)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~ 256 (366)
++..+. ..+...+..|..+|... .+.++|...|+...+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 665554 12222344444444322 15555655555555544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-08 Score=78.60 Aligned_cols=176 Identities=12% Similarity=0.003 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----ChhHHHHHH
Q 017743 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ----AFDKMEQVF 179 (366)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 179 (366)
+|.+.|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 55556666666666666666666666665543 44455555555555 4 566666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHhhc----cCcHHHHHHHHH
Q 017743 180 KSLMHSKEKPTLPTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYT-PSFITYECIITMYGY----CDNVSRAREIFD 250 (366)
Q Consensus 180 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 250 (366)
++..+.+ +...+..+...|.. .+++++|..+|++..+.+.. .....+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6654432 34444445444444 45555555555555544311 013444444444444 445555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHhhhCC
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMN-G-----LPTEADLLFENSHNMG 291 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 291 (366)
...+.+ .+...+..|...|... | ++++|...|+...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 554431 1233344444444332 1 4455555555444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-08 Score=80.41 Aligned_cols=189 Identities=11% Similarity=-0.009 Sum_probs=116.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCH--HHHH
Q 017743 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-P-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL--PTFN 195 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 195 (366)
+...+..+...+.+.|++++|...|+++.+.... | ....+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666777888889999999999988875322 1 1356777888888999999999999998875433211 2344
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH-------------
Q 017743 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS------------- 262 (366)
Q Consensus 196 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------- 262 (366)
.+..++...+.. .+ ..|..+...+...|++++|...|+.+.+..+. +..
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHH
Confidence 444444432100 00 00111111222234444444444444433221 111
Q ss_pred ----HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 263 ----TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 263 ----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
....+...|.+.|++++|...|+++.+...... ...+..+..++.+.|++++|...++.+...+
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 113456778889999999999999987632211 2568888999999999999999999988764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.6e-09 Score=85.71 Aligned_cols=164 Identities=7% Similarity=-0.076 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY-ECII 233 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 233 (366)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 34444455555555566666666666555542 2244555555555556666666666655554432 332221 1122
Q ss_pred HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhhchH
Q 017743 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-DSSTYKLLYKAYTKANMK 312 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 312 (366)
..+...++.+.|...++......+. +...+..+...+...|++++|...+.++.+..... +...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 2233445555555555555555433 45555556666666666666666666655543211 144555566666666666
Q ss_pred HHHHHHHHHH
Q 017743 313 ELVQKLLKRM 322 (366)
Q Consensus 313 ~~a~~~~~~m 322 (366)
++|...|++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 5555555543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-09 Score=80.96 Aligned_cols=157 Identities=7% Similarity=0.010 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhc
Q 017743 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKA 204 (366)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 204 (366)
.+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|...+++...... +...+...... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhh
Confidence 33444445555555555555443321 11344444555555555555555555555443221 22222111111 1111
Q ss_pred CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 017743 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTLNAMLEAYCMNGLPTEADLL 283 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 283 (366)
+....|...+++..+.. +.+...+..+..++...|++++|...|+.+.+..+.+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 11122344444444332 2234444455555555555555555555554443322 233444455555555555555554
Q ss_pred HHH
Q 017743 284 FEN 286 (366)
Q Consensus 284 ~~~ 286 (366)
|++
T Consensus 167 y~~ 169 (176)
T 2r5s_A 167 YRR 169 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-08 Score=77.29 Aligned_cols=186 Identities=11% Similarity=-0.029 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAP--DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI--ITFNLL 162 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 162 (366)
..+..+...+...|++++|...|+++.+..... ....+..+..++.+.|++++|+..|+++.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344455566667777777777777776642111 1245566666777777777777777776654322111 123333
Q ss_pred HHHHh------------------ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC
Q 017743 163 IDSYG------------------KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224 (366)
Q Consensus 163 ~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 224 (366)
..++. ..|++++|...|+++++..+. +...+...... ..+...+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~------- 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL------- 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-------
Confidence 33333 356777777777777764221 22222111100 0000000
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
......+...+.+.|++++|...|+.+.+..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123456677888999999999998887644311 2567788888999999999999988887654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.3e-09 Score=93.22 Aligned_cols=154 Identities=7% Similarity=-0.087 Sum_probs=103.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHH
Q 017743 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213 (366)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 213 (366)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888877653 2356777788888888888888888888887753 33577777788888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHhhhC
Q 017743 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN---GLPTEADLLFENSHNM 290 (366)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 290 (366)
+++..+.. +.+...+..+..++...|++++|.+.++...+.... +...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88877764 445677788888888888888888888888776544 567777788888888 8888888888887776
Q ss_pred C
Q 017743 291 G 291 (366)
Q Consensus 291 ~ 291 (366)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-07 Score=77.53 Aligned_cols=217 Identities=8% Similarity=-0.041 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHH----Hhc---CCH
Q 017743 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQAR--NVDQVNALFKELHESILAPDIYTYNGVMDAY----GKN---GMI 137 (366)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~~~ 137 (366)
++|+++++.+.... +-+..+|+.--..+...+ +++++++.++.++.... -+..+|+.--..+ ... +++
T Consensus 50 ~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence 45666666655432 334555666666666666 77777777777777642 2445555544444 444 677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc------HhH
Q 017743 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD--KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL------QGK 209 (366)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~~ 209 (366)
++++++++.+.+... -+..+|+.-...+.+.|.++ ++++.++++++..+ -|...|+.-...+...+. +++
T Consensus 127 ~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 777788877776643 36677776666666677776 77777777777643 366677666666666555 777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR-AREIFDELSKLG--KDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
+++.+..++... +-|...|+.+-..+.+.|+... +..+...+.+.+ -..+...+..+...|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 777777777664 4567777777777766666333 444555554432 122667778888888888888888888888
Q ss_pred hhh
Q 017743 287 SHN 289 (366)
Q Consensus 287 ~~~ 289 (366)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 775
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-09 Score=80.93 Aligned_cols=163 Identities=9% Similarity=-0.022 Sum_probs=126.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-h
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-Y 236 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 236 (366)
.+......+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34556677889999999999999987652 3467888999999999999999999999987654 354433332212 1
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhhchHHHH
Q 017743 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-DSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 315 (366)
...+....|...++...+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222334578889988887654 68899999999999999999999999999875443 366888999999999999999
Q ss_pred HHHHHHHHh
Q 017743 316 QKLLKRMEQ 324 (366)
Q Consensus 316 ~~~~~~m~~ 324 (366)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.2e-09 Score=85.41 Aligned_cols=167 Identities=8% Similarity=-0.081 Sum_probs=131.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHH-H
Q 017743 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN-S 196 (366)
Q Consensus 118 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 196 (366)
+.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4456677778888899999999999999988764 3367788888999999999999999999887643 4443332 2
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTLNAMLEAYCMNG 275 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 275 (366)
....+...++.+.|...+++..... +.+...+..+...+...|++++|...|..+.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2333566777888888888888764 5567888999999999999999999999998875542 2678899999999999
Q ss_pred ChhHHHHHHHHhh
Q 017743 276 LPTEADLLFENSH 288 (366)
Q Consensus 276 ~~~~a~~~~~~~~ 288 (366)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999988887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=8e-10 Score=80.72 Aligned_cols=108 Identities=10% Similarity=-0.023 Sum_probs=46.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 017743 99 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 178 (366)
.|++++|+..++...... +-+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|...|++++|+..
T Consensus 10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 344444444444443321 1122333344444455555555555555444432 12344444444444445555555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCcHhH
Q 017743 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 209 (366)
|++.++.. +.+...+..+...|.+.|++++
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHH
Confidence 54444431 1134444444444444444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6e-09 Score=93.78 Aligned_cols=163 Identities=7% Similarity=-0.079 Sum_probs=123.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 017743 99 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 178 (366)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 3367889999999999999999999999999874 33688899999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc---CcHHHHHHHHHHHHhC
Q 017743 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DNVSRAREIFDELSKL 255 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 255 (366)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998863 3468889999999999999999999999998875 44678889999999999 9999999999999887
Q ss_pred CCCCCHHHHHH
Q 017743 256 GKDMKVSTLNA 266 (366)
Q Consensus 256 ~~~~~~~~~~~ 266 (366)
+.. +...+..
T Consensus 158 ~p~-~~~~~~~ 167 (568)
T 2vsy_A 158 GVG-AVEPFAF 167 (568)
T ss_dssp TCC-CSCHHHH
T ss_pred CCc-ccChHHH
Confidence 654 3334433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.3e-08 Score=79.82 Aligned_cols=90 Identities=8% Similarity=0.047 Sum_probs=41.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC---C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCC--CHHHHHHH
Q 017743 93 LRACAQARNVDQVNALFKELHESILA---P--DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ---CKP--DIITFNLL 162 (366)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l 162 (366)
...|...|++++|...|.+..+.... + -..+|+.+...|...|++++|+..|++..+.. -.+ -..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455566666666666555442100 0 02244455555555555555555555443210 001 12334444
Q ss_pred HHHHhccCChhHHHHHHHHHH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLM 183 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~ 183 (366)
...|.. |++++|+..|++.+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHH
Confidence 444444 55555555554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-06 Score=71.24 Aligned_cols=223 Identities=7% Similarity=-0.009 Sum_probs=161.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-C-ChhH
Q 017743 98 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-Q-AFDK 174 (366)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 174 (366)
..+..++|+++++.++... +-+..+|+.--.++...| .+++++++++.+.....+ +..+|+.-...+... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 3445568889998888874 225566777777777777 589999999999887544 677777766666665 6 7889
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc-----
Q 017743 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG--------KAEYVFQKMTAMKYTPSFITYECIITMYGYCDN----- 241 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 241 (366)
++++++.+++.. +-+..+|+--...+.+.+.++ ++++.+.++.+.. +-+...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 999999988753 336777776666666656665 8888888888775 5577788877777777765
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHhhhCC-----CCC
Q 017743 242 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP--------------------TEADLLFENSHNMG-----VTP 294 (366)
Q Consensus 242 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~p 294 (366)
++++++.++......+. |...|+-+-..+.+.|+. .........+...+ -.+
T Consensus 222 ~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 68888888888887665 888888877777776654 33444444444332 135
Q ss_pred CHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+......++..|...|+.++|.++++.+.+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 7888999999999999999999999998754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=9e-08 Score=74.17 Aligned_cols=127 Identities=11% Similarity=0.015 Sum_probs=85.6
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (366)
.+..+...+...|++++|...|++. +.|+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3445566667777777777777766 34566777777777777777777777777776654 345666777777777
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKV----------------STLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
..|++++|...|+...+.... +. ..+..+..++...|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777777777777777665432 22 55666666677777777777777766654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.2e-09 Score=85.48 Aligned_cols=224 Identities=11% Similarity=0.004 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 63 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
.+++++|.+++++..+.. +. .+.. .++++.|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 466888888888776421 11 1222 57788888877765 45677889999999
Q ss_pred HHHHHHHHC----CCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCcHhHHH
Q 017743 142 SVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---KP--TLPTFNSMIINYGKARLQGKAE 211 (366)
Q Consensus 142 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~~~a~ 211 (366)
..|.+..+. +-. .-..+|..+...|...|++++|+..|++.++... .+ -..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999887543 111 1145788888899999999999999998765311 11 13567778888888 9999999
Q ss_pred HHHHHHHhCCC---CC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCChhHHH
Q 017743 212 YVFQKMTAMKY---TP--SFITYECIITMYGYCDNVSRAREIFDELSKLG----KDMK-VSTLNAMLEAYCMNGLPTEAD 281 (366)
Q Consensus 212 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~li~~~~~~g~~~~a~ 281 (366)
..+++..+... .+ ...++..+...+...|++++|...|++..+.. ..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998775421 11 14578888999999999999999999887642 1111 235667777888889999999
Q ss_pred HHHHHhhhCCCCCC---HH---HHHHHHHHHHhhchHHHHHHH
Q 017743 282 LLFENSHNMGVTPD---SS---TYKLLYKAYTKANMKELVQKL 318 (366)
Q Consensus 282 ~~~~~~~~~~~~p~---~~---~~~~l~~~~~~~~~~~~a~~~ 318 (366)
..|++.. . .|+ .. ....++.++ ..|+.+.+..+
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999988 4 343 22 334455555 56676665553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=7.6e-08 Score=74.59 Aligned_cols=130 Identities=11% Similarity=-0.016 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 017743 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202 (366)
Q Consensus 123 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 202 (366)
.+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...|++..... +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455566667777777777776653 4466677777777777777777777777776652 335666666777777
Q ss_pred hcCcHhHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC
Q 017743 203 KARLQGKAEYVFQKMTAMKYT--------------P-SFITYECIITMYGYCDNVSRAREIFDELSKLGK 257 (366)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (366)
..|++++|...+++..+.... | ....+..+..++...|++++|...|+...+..+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 777777777777777664311 1 125666666777777777777777777766543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-07 Score=70.12 Aligned_cols=130 Identities=12% Similarity=-0.022 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
..+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...++...+..+. +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345666667777888888888888777653 345677778888888888888888888888776543 677888888888
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH--HHHhhchHHHHHHHHHHHHh
Q 017743 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK--AYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~ 324 (366)
...|++++|...+++..+... .+...+..+.. .+...|++++|...+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888999999988888877642 24555533333 37778899999888876543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.91 E-value=6e-08 Score=68.25 Aligned_cols=95 Identities=8% Similarity=-0.128 Sum_probs=51.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
.+......+.+.|++++|...|++..+..+. +...|..+..+|...|++++|+..+++.++.+ +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 4444555555555555555555555554333 45555555555555555555555555555543 224555555555555
Q ss_pred hhchHHHHHHHHHHHHh
Q 017743 308 KANMKELVQKLLKRMEQ 324 (366)
Q Consensus 308 ~~~~~~~a~~~~~~m~~ 324 (366)
..|++++|.+.|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 55555555555555555
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-05 Score=69.86 Aligned_cols=150 Identities=12% Similarity=0.010 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-NVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
.|...+....+.++.+.|..+|+.. ... ..+...|......-...+ +.+.|..+|+...+.-.. ++..+...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 3444455555567788888888888 321 234444443222222223 588888888888775332 455666677777
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC----C-CCCC------------hhHH
Q 017743 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN----G-IVPN------------KRFF 334 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g-~~~~------------~~~~ 334 (366)
...|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++.+. + -.|. ..++
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l 439 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRY 439 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhH
Confidence 78888888888888873 25677777777777788888888888777631 1 1111 1567
Q ss_pred HHHHHHhhcccccCCC
Q 017743 335 LEALETFSSSLAGSQS 350 (366)
Q Consensus 335 ~~ll~~~~~~~~~~~~ 350 (366)
..+++.|+-.......
T Consensus 440 ~~~~~~~~~~~~~~~~ 455 (493)
T 2uy1_A 440 HCFLDSFNFLDLKIRD 455 (493)
T ss_dssp HHHHHHHCBTTBCCCC
T ss_pred HHHHHHhhhhccccCC
Confidence 7778877655444333
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-07 Score=74.57 Aligned_cols=211 Identities=8% Similarity=-0.012 Sum_probs=141.7
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017743 33 LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL 112 (366)
Q Consensus 33 ~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 112 (366)
.+..+..-...|+..+...+...+.-..+ .++..-.. ........+...+..+...|++++|..++++.
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~--~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIY--SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTS--SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCC--CcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444433346777777777666543221 12222111 00112334455688899999999999999998
Q ss_pred HHcCC-CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCChhHHHHHHHHH
Q 017743 113 HESIL-APDI----YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-PD----IITFNLLIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 113 ~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (366)
.+... .|+. ..+..+...+...+++++|+..+++..+.... ++ ..+++.+...|...|++++|...|+++
T Consensus 102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 87431 2221 13345667777788999999999998874322 22 336888899999999999999999988
Q ss_pred Hhc-----CCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHhhccCc-HHHHHHHHH
Q 017743 183 MHS-----KEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAM----KYTPS-FITYECIITMYGYCDN-VSRAREIFD 250 (366)
Q Consensus 183 ~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~ 250 (366)
.+. +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|..+..++...|+ +++|...++
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 741 1112 2347788889999999999999998877643 22222 5788889999999994 689998888
Q ss_pred HHHh
Q 017743 251 ELSK 254 (366)
Q Consensus 251 ~~~~ 254 (366)
....
T Consensus 262 ~Al~ 265 (293)
T 3u3w_A 262 KASF 265 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.89 E-value=4.7e-07 Score=74.02 Aligned_cols=201 Identities=9% Similarity=-0.018 Sum_probs=143.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC
Q 017743 80 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT---YNGVMDAYGKNGMIKEMESVLSRMKSNQC-KPD 155 (366)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 155 (366)
+...|+..+...+...+.-.- + .+ .......+... +...+..+...|++++|..++++..+... .|+
T Consensus 40 g~~~~~~~~l~~i~~~l~~~~--~---~~----~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~ 110 (293)
T 3u3w_A 40 GAVYPSMDILQGIAAKLQIPI--I---HF----YEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE 110 (293)
T ss_dssp TSCCCCHHHHHHHHHHHTCCT--H---HH----HHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHH
T ss_pred CCCCCCHHHHHHHHHHhCcCH--H---HH----hCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChH
Confidence 334788888777777664321 1 11 12122222333 33446788899999999999999887532 233
Q ss_pred H----HHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCcHhHHHHHHHHHHh----C-C
Q 017743 156 I----ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT----LPTFNSMIINYGKARLQGKAEYVFQKMTA----M-K 221 (366)
Q Consensus 156 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-~ 221 (366)
. ..+..+...+...+++++|+..+++....... ++ ..+++.+...|...|++++|...+++..+ . +
T Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 190 (293)
T 3u3w_A 111 FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD 190 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Confidence 2 23445777888889999999999999874222 22 34689999999999999999999999873 2 2
Q ss_pred CCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC-hhHHHHHHHHhhh
Q 017743 222 YTPS-FITYECIITMYGYCDNVSRAREIFDELSKL----GKDM-KVSTLNAMLEAYCMNGL-PTEADLLFENSHN 289 (366)
Q Consensus 222 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~ 289 (366)
..+. ..++..+...|.+.|++++|...++...+. +..+ -..+|..+..+|...|+ +++|.+.+++...
T Consensus 191 ~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 191 NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 1222 347889999999999999999999887643 2222 26789999999999995 5999998887653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.9e-08 Score=71.44 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 270 (366)
...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...|+...+..+. ++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 3345555556666666666666666666553 334556666666666666666666666666665443 45566666666
Q ss_pred HHhcCChhHHHHHHHHhhhC
Q 017743 271 YCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~ 290 (366)
|...|++++|...|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-07 Score=66.46 Aligned_cols=60 Identities=12% Similarity=0.008 Sum_probs=22.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
.|..+..++...|++++|...++...+.++. +...|..+..++...|++++|.+.|++..
T Consensus 49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 49 LYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333333333333333333333333333222 23333333333333333333333333333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-07 Score=69.39 Aligned_cols=127 Identities=8% Similarity=-0.004 Sum_probs=68.9
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (366)
.+..+...+...|+++.|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444555555566666666666555532 2245555555556666666666666666655543 334555666666666
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHh
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNA--MLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~~ 287 (366)
..|++++|...++...+..+. +...+.. ....+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666554332 3333322 222355556666666655543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.85 E-value=5.1e-06 Score=72.95 Aligned_cols=295 Identities=8% Similarity=-0.004 Sum_probs=160.4
Q ss_pred ccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCC-CCC
Q 017743 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC-KPN 85 (366)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 85 (366)
+..-..+|...+..+-. |+++.+..+|+..... .|+...|...+....+.++ ..+....+|+.....-|. +++
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~---~~~~i~~~fe~al~~vg~d~~s 84 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQ---KKFKLYEVYEFTLGQFENYWDS 84 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-------CTHHHHHHHHHHSTTCTTC
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHcCCCccc
Confidence 33445567777776655 7788888888887764 4677777777766543321 123445556555433332 345
Q ss_pred HHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCC-h-h-------------------------------------
Q 017743 86 IVTYNILLRACA----QARNVDQVNALFKELHESILAPD-I-Y------------------------------------- 122 (366)
Q Consensus 86 ~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~-~------------------------------------- 122 (366)
...|...+..+. ..++.+.+.++|++.+.. ++. . .
T Consensus 85 ~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~ 162 (493)
T 2uy1_A 85 YGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHH
Confidence 666776666543 235667777777777763 211 1 1
Q ss_pred -----------hHHHHHHHHHhc--CC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 123 -----------TYNGVMDAYGKN--GM-----IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 123 -----------~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
.|...+..-... +- .+.+..+|+++... .+.+...|...+..+...|+.+.|..++++...
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111111110010 00 12344555555543 233455666666666667777777777777776
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC---C------C---CCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 017743 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM---K------Y---TPSFITYECIITMYGYCDNVSRAREIFDEL 252 (366)
Q Consensus 185 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (366)
. +.+...+.. |....+.++. ++.+.+. . . ......|...+....+.++.+.|..+|+..
T Consensus 242 ~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 242 M--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp H--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 5 222222221 1111111111 1111110 0 0 011234555666666678899999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 253 SKLGKDMKVSTLNAMLEAYCM-NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 253 ~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
.. ...+...|......-.. .++.+.|..+|+...+.- +-+...+...++...+.|+.+.|..+|++.
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 22345555433332222 336999999999988753 224556667777778889999988777764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.84 E-value=5.2e-08 Score=79.14 Aligned_cols=98 Identities=8% Similarity=-0.058 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566667777777777777777777777653 2256667777777777777777777777776653 235566667777
Q ss_pred HHhccCChhHHHHHHHHHHh
Q 017743 165 SYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~ 184 (366)
++...|++++|...|++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776655
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.3e-08 Score=72.33 Aligned_cols=121 Identities=11% Similarity=0.144 Sum_probs=70.6
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-hhccCcH--H
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-YGYCDNV--S 243 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 243 (366)
...|++++|...++...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 44566666666666665542 2355666666666666666666666666666543 2345555555555 5556665 6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+|...++.+.+..+. +...+..+...+...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666665433 4555666666666666666666666666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-07 Score=64.16 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
.+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++.+.+.... +...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 34444444444445555544444444332 223344444444444555555555555544443222 3444445555555
Q ss_pred hcCChhHHHHHHHHhhhC
Q 017743 273 MNGLPTEADLLFENSHNM 290 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~ 290 (366)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.3e-08 Score=73.97 Aligned_cols=155 Identities=14% Similarity=0.029 Sum_probs=75.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccCcHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM----KYTP-SFITYECIITMYGYCDNVS 243 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~ 243 (366)
.|++++|.++++.+... ......++..+...+...|++++|...+++..+. +..+ ...++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 44555555533333221 1123344445555555555555555555544431 1111 1334555555666666666
Q ss_pred HHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHHhhchH
Q 017743 244 RAREIFDELSKL----GKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV-TPD----SSTYKLLYKAYTKANMK 312 (366)
Q Consensus 244 ~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~ 312 (366)
+|...+++..+. +..+ ....+..+...+...|++++|...+++...... ..+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666554432 1011 133455566666666666666666665542100 011 22345566666677777
Q ss_pred HHHHHHHHHHHh
Q 017743 313 ELVQKLLKRMEQ 324 (366)
Q Consensus 313 ~~a~~~~~~m~~ 324 (366)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766666553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=5.2e-08 Score=79.15 Aligned_cols=194 Identities=6% Similarity=-0.039 Sum_probs=133.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 017743 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 199 (366)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677888899999999999999999998863 3378889999999999999999999999998863 346788899999
Q ss_pred HHHhcCcHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 017743 200 NYGKARLQGKAEYVFQKMTAMKYTPSF-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278 (366)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (366)
++...|++++|...|++..+.. |+. ..+...+....+ ...+. -+..........+......+.. + ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 9999999999999999887642 211 011111111111 11111 1222233333444554444433 2 368999
Q ss_pred HHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhh-chHHHHHHHHHHHHhC
Q 017743 279 EADLLFENSHNMGVTPDSS-TYKLLYKAYTKA-NMKELVQKLLKRMEQN 325 (366)
Q Consensus 279 ~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-~~~~~a~~~~~~m~~~ 325 (366)
+|.+.++...+. .|+.. ....+...+.+. +.+++|.++|.+..+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999888775 45543 334444444444 6788999999887653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-06 Score=71.53 Aligned_cols=163 Identities=10% Similarity=0.043 Sum_probs=89.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC---CCC--HHHHH
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPT-----LPTFNSMIINYGKARLQGKAEYVFQKMTAMKY---TPS--FITYE 230 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~ 230 (366)
..+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344455555666666666555544322111 01122334445555666666666666654311 111 33566
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHh---CCCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC----CCC-CHHHH
Q 017743 231 CIITMYGYCDNVSRAREIFDELSK---LGKD-M--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMG----VTP-DSSTY 299 (366)
Q Consensus 231 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~~~~ 299 (366)
.+...|...|++++|...++...+ .... + ...++..+...|...|++++|...+++..+.. ... -..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666777777777777777766552 1111 1 12466667777777777777777777655321 111 14566
Q ss_pred HHHHHHHHhhchHHHH-HHHHHHHH
Q 017743 300 KLLYKAYTKANMKELV-QKLLKRME 323 (366)
Q Consensus 300 ~~l~~~~~~~~~~~~a-~~~~~~m~ 323 (366)
..+...+.+.|++++| ...+++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 7777777777777777 55566544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-06 Score=71.04 Aligned_cols=163 Identities=7% Similarity=-0.063 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCChhHHHHHHHHHHhcCC---CCC--HHHHH
Q 017743 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPD-----IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---KPT--LPTFN 195 (366)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~ 195 (366)
..+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++...... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344445555555555555554444321111 01223344445555666666666665543211 111 33555
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC----CC-CCHHHH
Q 017743 196 SMIINYGKARLQGKAEYVFQKMTA---M-KYTP--SFITYECIITMYGYCDNVSRAREIFDELSKLG----KD-MKVSTL 264 (366)
Q Consensus 196 ~li~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~ 264 (366)
.+...|...|++++|...+++..+ . +..+ ...++..+..+|...|++++|...++...+.. .. .-..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666666666666666666665542 1 1011 11456666666666667766666666654321 11 114556
Q ss_pred HHHHHHHHhcCChhHH-HHHHHHhh
Q 017743 265 NAMLEAYCMNGLPTEA-DLLFENSH 288 (366)
Q Consensus 265 ~~li~~~~~~g~~~~a-~~~~~~~~ 288 (366)
..+..+|...|++++| ...+++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6666677777777776 55555543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.9e-08 Score=72.47 Aligned_cols=118 Identities=8% Similarity=0.072 Sum_probs=62.4
Q ss_pred cCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--hHH
Q 017743 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMNGLP--TEA 280 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~a 280 (366)
.|++++|...++...+.. +.+...+..+..++...|++++|...|+...+..+. +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 455555555555555442 334455555555566666666666666655554332 44555555555 5555555 666
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 281 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
...+++..+... .+...+..+...+...|++++|...+++..+
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 666665555431 2345555555556666666666666665554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.6e-08 Score=71.60 Aligned_cols=95 Identities=8% Similarity=-0.069 Sum_probs=45.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
.+..+...+...|++++|...|+.+...++. +...|..+..+|...|++++|+..|++...... .+...+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3444444444555555555555554444322 444444555555555555555555555444331 13444444555555
Q ss_pred hhchHHHHHHHHHHHHh
Q 017743 308 KANMKELVQKLLKRMEQ 324 (366)
Q Consensus 308 ~~~~~~~a~~~~~~m~~ 324 (366)
..|++++|...|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.7e-07 Score=64.32 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (366)
..+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444555555555555555555554432 2234455555555555555555555555555432 23444555555555
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
...|++++|...++.+.+..+. +...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 5666666666666655554322 334444443333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.2e-07 Score=65.77 Aligned_cols=115 Identities=8% Similarity=-0.096 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 270 (366)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...+.... +...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4445555555555666666666666555443 234455555555666666666666666665554332 45555556666
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
+...|++++|.+.+++..+... .+...+..+...+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 6666666666666665554321 123344444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-07 Score=64.80 Aligned_cols=61 Identities=11% Similarity=-0.007 Sum_probs=24.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.+..+..++...|++++|...++...+..+. +...+..+...+...|++++|...+++..+
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3333333344444444444444443333211 233344444444444444444444444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-06 Score=69.59 Aligned_cols=218 Identities=7% Similarity=-0.035 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-CHHHHHHH
Q 017743 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMDAYGKN-G-MIKEMESV 143 (366)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~ 143 (366)
++|+++++.+.... +-+..+|+.--..+...| .++++++.++.++.... -+..+|+.-..++.+. + ++++++++
T Consensus 71 e~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 71 ERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 45666666655432 344555666555555666 47777777777776542 3556666665555554 5 66777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChh--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc-------Hh
Q 017743 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFD--------KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL-------QG 208 (366)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~ 208 (366)
++.+.+...+ |...|+.-...+.+.|.++ ++++.++++++..+ -|...|+.....+.+.+. ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHH
Confidence 7777765432 5666665555555555555 77777777776533 366667666666666554 56
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH--------------------HHHHHHHHHHHhCC-----CCCCHHH
Q 017743 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV--------------------SRAREIFDELSKLG-----KDMKVST 263 (366)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~ 263 (366)
++++.+.+.+... +-|...|+.+-..+.+.|+. .........+.... ..++...
T Consensus 226 eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 6777777666654 44566666555544444432 22222222222221 1247778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+..++..|...|+.++|.++++.+.+.
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 888889999999999999999988643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-07 Score=69.01 Aligned_cols=106 Identities=9% Similarity=0.033 Sum_probs=92.8
Q ss_pred CCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 017743 223 TPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301 (366)
Q Consensus 223 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 301 (366)
.|+ ...+..+...+...|++++|...|+.+...++. +...|..+..+|...|++++|+..|++..+..+. +...|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 343 557888888999999999999999999998765 7899999999999999999999999999987633 6788999
Q ss_pred HHHHHHhhchHHHHHHHHHHHHhCCCCCChh
Q 017743 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332 (366)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 332 (366)
+..++...|++++|...|++..+. .|+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999999999984 35554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-07 Score=65.06 Aligned_cols=120 Identities=9% Similarity=0.000 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 234 (366)
+...+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|...++...... +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34556666667777777777777777776642 3356666677777777777777777777776653 334566677777
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
++...|++++|...|+...+..+. +...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 777777777777777777665433 556666666666665553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-07 Score=65.30 Aligned_cols=98 Identities=6% Similarity=0.043 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (366)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3334444444444444444444444444331 1234444444444444445555555444444432 2234444444555
Q ss_pred hhccCcHHHHHHHHHHHHhC
Q 017743 236 YGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~ 255 (366)
+...|++++|...|+...+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55555555555555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4.7e-07 Score=75.52 Aligned_cols=130 Identities=14% Similarity=-0.035 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--------------FITYECIITMYGYCDNVSRAREIFDELSKLGK 257 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (366)
..+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|...++...+..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444455555555555555555555554321111 46777888888888888888888888887754
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHH-HHHHHHHH
Q 017743 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV-QKLLKRME 323 (366)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~m~ 323 (366)
. +...|..+..+|...|++++|...|++..+... .+...+..+...+...|+.++| ...++.|.
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 677888888888888888888888888887642 3677788888888888888877 44555554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-07 Score=72.58 Aligned_cols=154 Identities=10% Similarity=0.014 Sum_probs=77.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCcHh
Q 017743 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KE-KPTLPTFNSMIINYGKARLQG 208 (366)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~ 208 (366)
.|++++|.++++.+... ......++..+...+...|++++|...+++.... +. .....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 44555555533332221 1123444455555555555555555555554431 11 112334555555566666666
Q ss_pred HHHHHHHHHHhC----CCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCh
Q 017743 209 KAEYVFQKMTAM----KYTP--SFITYECIITMYGYCDNVSRAREIFDELSKL----GKD-MKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 209 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~ 277 (366)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666554432 1011 1234556666666677777777776665432 110 0123356667777777888
Q ss_pred hHHHHHHHHhh
Q 017743 278 TEADLLFENSH 288 (366)
Q Consensus 278 ~~a~~~~~~~~ 288 (366)
++|...+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-07 Score=76.67 Aligned_cols=130 Identities=11% Similarity=-0.020 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT--------------LPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
...+..+...+.+.|++++|...|++.+....... ...|..+..++.+.|++++|...+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555666666666777777777766666432221 4677777788888888888888888877764
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHh
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENS 287 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 287 (366)
+.+...|..+..++...|++++|...|+...+..+. +...+..+..++...|+.++| ..++..|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888888888888888888776544 567777778888888887777 3455544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-07 Score=69.04 Aligned_cols=99 Identities=13% Similarity=0.016 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269 (366)
Q Consensus 190 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 269 (366)
+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+.....++. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 34455566667777777777777777776654 445667777777777777777777777777766544 5667777777
Q ss_pred HHHhcCChhHHHHHHHHhhhC
Q 017743 270 AYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+|...|++++|...|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777778888887777777654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.4e-07 Score=62.87 Aligned_cols=95 Identities=11% Similarity=-0.100 Sum_probs=46.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
.+..+...+...|++++|...|+...+..+. +...|..+..++...|++++|+..+++..+.+. .+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 3344444444555555555555554444322 344455555555555555555555555544331 13444555555555
Q ss_pred hhchHHHHHHHHHHHHh
Q 017743 308 KANMKELVQKLLKRMEQ 324 (366)
Q Consensus 308 ~~~~~~~a~~~~~~m~~ 324 (366)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-07 Score=67.47 Aligned_cols=95 Identities=11% Similarity=-0.039 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
.+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+.....++. +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 33344444555555555555555555443 234445555555555555555555555555554333 3444555555555
Q ss_pred hcCChhHHHHHHHHhhh
Q 017743 273 MNGLPTEADLLFENSHN 289 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~ 289 (366)
..|++++|...|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-06 Score=68.56 Aligned_cols=125 Identities=8% Similarity=-0.100 Sum_probs=56.1
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHhhcc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGYC 239 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 239 (366)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3444555555555555555554422 222133333334455555555555554333221 110 12344444555555
Q ss_pred CcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 240 DNVSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
|++++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555543221121 22334444445555555555555555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-06 Score=69.65 Aligned_cols=192 Identities=9% Similarity=-0.068 Sum_probs=130.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHhccCChhHHHHHHHHHHh------------cCCC-----
Q 017743 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLL-------IDSYGKRQAFDKMEQVFKSLMH------------SKEK----- 188 (366)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~------------~~~~----- 188 (366)
..++...|.+.|.++.+.... ....|..+ ...+...++..+++..+..-.. .|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 356666666666666655322 34455544 3334444444444444444333 1110
Q ss_pred ---CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC--HHH
Q 017743 189 ---PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK--VST 263 (366)
Q Consensus 189 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 263 (366)
.-..........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 012334456777889999999999999888654 544466666678889999999999998655432 111 346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 330 (366)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 77889999999999999999999875433254 346777888899999999999999999984 466
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-06 Score=58.89 Aligned_cols=93 Identities=12% Similarity=-0.030 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 195 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
..+...+...|++++|...++...... +.+...+..+..++...|++++|...++...+..+. +...+..+..++...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHH
Confidence 333344444444444444444444332 223334444444444444444444444444443222 334444444444444
Q ss_pred CChhHHHHHHHHhhh
Q 017743 275 GLPTEADLLFENSHN 289 (366)
Q Consensus 275 g~~~~a~~~~~~~~~ 289 (366)
|++++|...+++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-06 Score=61.41 Aligned_cols=96 Identities=8% Similarity=-0.127 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
.+......+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...++...+.++. +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 34445555566666666666666655543 334556666666666666666666666666665433 4556666666666
Q ss_pred hcCChhHHHHHHHHhhhC
Q 017743 273 MNGLPTEADLLFENSHNM 290 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~ 290 (366)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666665543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-06 Score=58.48 Aligned_cols=96 Identities=13% Similarity=0.009 Sum_probs=47.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (366)
.+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444444455555555555555554431 2234444445555555555555555555554432 223444555555555
Q ss_pred ccCcHHHHHHHHHHHHhC
Q 017743 238 YCDNVSRAREIFDELSKL 255 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~ 255 (366)
..|++++|...++...+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 555555555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-06 Score=66.23 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 017743 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306 (366)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 306 (366)
..+..+..++...|++++|...++...+.... +...+..+..+|...|++++|...|++..+... -+...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence 56777777788888888888888887776543 677788888888888888888888888777542 2566777777777
Q ss_pred HhhchHHHHH-HHHHHHHhC
Q 017743 307 TKANMKELVQ-KLLKRMEQN 325 (366)
Q Consensus 307 ~~~~~~~~a~-~~~~~m~~~ 325 (366)
...++.+++. ..+..|...
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 7777776666 445555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-06 Score=61.90 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=45.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC--CCC----HHHHHHH
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV--TPD----SSTYKLL 302 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~l 302 (366)
+..+...+.+.|++++|+..|+...+..+. +...|..+..+|...|++++|++.+++.++.+. .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344444455555555555555555444332 344455555555555555555555554443210 111 1234444
Q ss_pred HHHHHhhchHHHHHHHHHHHHh
Q 017743 303 YKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..++...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555555555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-06 Score=63.06 Aligned_cols=95 Identities=9% Similarity=-0.061 Sum_probs=51.0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
.+..+...+...|++++|...|+.+...++. +...|..+..++...|++++|...|++....+. .+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 3444444555555555555555555554433 455555555555555555555555555555432 24445555555555
Q ss_pred hhchHHHHHHHHHHHHh
Q 017743 308 KANMKELVQKLLKRMEQ 324 (366)
Q Consensus 308 ~~~~~~~a~~~~~~m~~ 324 (366)
..|++++|...|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00014 Score=59.66 Aligned_cols=187 Identities=5% Similarity=0.009 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc-HhHHHHH
Q 017743 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ--AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL-QGKAEYV 213 (366)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~ 213 (366)
+++++.+++.+..... -+..+|+.-...+...+ ++++++.+++.+.+.. +-+..+|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 3455555555554432 24455544444444444 2555555555555542 2245555544444445554 3555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhcc--------------CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 017743 214 FQKMTAMKYTPSFITYECIITMYGYC--------------DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN----- 274 (366)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 274 (366)
+..+++.. +-|...|+.....+... +.++++++.+.......+. |...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 55555543 33444444433333322 3466667777666665544 666665444444333
Q ss_pred ------CChhHHHHHHHHhhhCCCCCCHHHHHHHHHH-----HHhhchHHHHHHHHHHHHhCCCCCChh
Q 017743 275 ------GLPTEADLLFENSHNMGVTPDSSTYKLLYKA-----YTKANMKELVQKLLKRMEQNGIVPNKR 332 (366)
Q Consensus 275 ------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~~g~~~~~~ 332 (366)
+.++++++.++++.+. .||. .|..+..+ ....|..+++..++.++.+ +.|...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~ 309 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRA 309 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGH
T ss_pred cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchh
Confidence 3466777777777764 3443 23222111 1234666777788888876 445443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-06 Score=66.01 Aligned_cols=88 Identities=13% Similarity=0.009 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
..+..+..++...|++++|...++...+.. +.+...+..+..++...|++++|...|+...+..+. +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 455566666666777777777776666553 344566666667777777777777777776665433 455666666666
Q ss_pred HhcCChhHHH
Q 017743 272 CMNGLPTEAD 281 (366)
Q Consensus 272 ~~~g~~~~a~ 281 (366)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 6655555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=8e-06 Score=57.98 Aligned_cols=98 Identities=9% Similarity=-0.079 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269 (366)
Q Consensus 190 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 269 (366)
+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...++...+..+. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34445555555555555555555555555443 233455555555555555555555555555554333 4555555555
Q ss_pred HHHhcCChhHHHHHHHHhhh
Q 017743 270 AYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~ 289 (366)
++...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 56666666666655555543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=0.0002 Score=58.82 Aligned_cols=185 Identities=9% Similarity=-0.054 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hhHHHHH
Q 017743 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNG--MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQV 178 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 178 (366)
+++++.+++.+.... +-+..+|+.-..++.+.+ .+++++.+++.+.+.... |...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 345555555555543 224455555544454444 255666666665554322 55555554444444555 3556666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhc--------------CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc-----
Q 017743 179 FKSLMHSKEKPTLPTFNSMIINYGKA--------------RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC----- 239 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 239 (366)
++.+++..+ -|...|+.....+... +.++++++.+....... +-|...|+.+-..+...
T Consensus 168 ~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 666555432 2455555444443333 34566666666666543 44455555443333333
Q ss_pred ------CcHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCChhHHHHHHHHhhhCC
Q 017743 240 ------DNVSRAREIFDELSKLGKDMKVSTLNAMLE---AYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 240 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
+.++++++.++++.+..+. +.-.+..++. +....|..+++...+.++.+.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4577888888888876543 2222222221 1113466667777888777654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-06 Score=60.69 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD--MK----VSTLNAM 267 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 267 (366)
+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..++...+.++. ++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444555555555555555554432 223444555555555555555555555554432111 00 1244555
Q ss_pred HHHHHhcCChhHHHHHHHHhhh
Q 017743 268 LEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~ 289 (366)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666666666666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.3e-06 Score=63.19 Aligned_cols=100 Identities=10% Similarity=-0.056 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269 (366)
Q Consensus 190 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 269 (366)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...|+...+..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567777778888888888888888887764 446777888888888888888888888888877544 6777888888
Q ss_pred HHHhcCChhHHHHHHHHhhhCC
Q 017743 270 AYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
+|...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888877653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-06 Score=58.73 Aligned_cols=91 Identities=4% Similarity=-0.128 Sum_probs=35.9
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHhhcc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP--SFITYECIITMYGYC 239 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 239 (366)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..++...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHH
Confidence 3333444444444444444443321 1123333334444444444444444444444332 11 233344444444444
Q ss_pred -CcHHHHHHHHHHHHh
Q 017743 240 -DNVSRAREIFDELSK 254 (366)
Q Consensus 240 -~~~~~a~~~~~~~~~ 254 (366)
|++++|.+.++....
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 90 EGKEVEAEIAEARAKL 105 (112)
T ss_dssp SSCSHHHHHHHHHHGG
T ss_pred hCCHHHHHHHHHHHhh
Confidence 444444444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.9e-06 Score=60.34 Aligned_cols=101 Identities=9% Similarity=-0.092 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 017743 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302 (366)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 302 (366)
+.+...+..+...+...|++++|...|+......+. +...|..+..++...|++++|...+++..+.+. .+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 346788899999999999999999999999987654 688999999999999999999999999988753 378899999
Q ss_pred HHHHHhhchHHHHHHHHHHHHhC
Q 017743 303 YKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
..++...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999998863
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-06 Score=60.92 Aligned_cols=95 Identities=11% Similarity=0.101 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD--MK----VSTLNAM 267 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 267 (366)
+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|...++...+.... ++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3344444444455555555554444432 223444444444455555555555555544433211 11 3444555
Q ss_pred HHHHHhcCChhHHHHHHHHhhh
Q 017743 268 LEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~ 289 (366)
...+...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5555555555555555555554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=7e-06 Score=59.05 Aligned_cols=97 Identities=9% Similarity=-0.101 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 017743 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMK---VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302 (366)
Q Consensus 226 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 302 (366)
...+..+...+...|++++|...|+...+.... + ...+..+..+|...|++++|...+++..+.. +.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 444555555555555555555555555543221 1 4455555555556666666666665555442 1245555555
Q ss_pred HHHHHhhchHHHHHHHHHHHHh
Q 017743 303 YKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..++...|++++|...|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666666666555
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.7e-06 Score=60.98 Aligned_cols=98 Identities=8% Similarity=-0.007 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (366)
...+..+...+...|++++|+..|++.+... +.+...|..+..+|...|++++|...+++..+.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555555555555555555555532 2245555555555555555555555555555543 2334555555555
Q ss_pred hhccCcHHHHHHHHHHHHhC
Q 017743 236 YGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~ 255 (366)
+...|++++|...|+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 55555555555555555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-06 Score=57.57 Aligned_cols=99 Identities=10% Similarity=-0.118 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP--DIITFNLL 162 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 162 (366)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34456666667777777777777777776653 2355666666777777777777777777776652 22 45666667
Q ss_pred HHHHhcc-CChhHHHHHHHHHHhc
Q 017743 163 IDSYGKR-QAFDKMEQVFKSLMHS 185 (366)
Q Consensus 163 ~~~~~~~-~~~~~a~~~~~~~~~~ 185 (366)
..++... |++++|.+.++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 7777777777777664
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.8e-06 Score=59.49 Aligned_cols=21 Identities=5% Similarity=-0.088 Sum_probs=8.1
Q ss_pred HHHHHhccCChhHHHHHHHHH
Q 017743 162 LIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~ 182 (366)
+...+...|++++|...|++.
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a 54 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQA 54 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 333333333333333333333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.4e-06 Score=70.85 Aligned_cols=164 Identities=8% Similarity=-0.089 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCChhHHHHHHHHHHhc----CCCC-CHHH
Q 017743 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQC-KPDI----ITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KEKP-TLPT 193 (366)
Q Consensus 124 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 193 (366)
+..+...|...|++++|.+.+..+...-. .++. .+.+.+...+...|+++.+..+++..... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 34455555555555555555554432100 0011 11222223333445555555555544321 1111 1334
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhC---CCCC---CHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAM----KYTP-SFITYECIITMYGYCDNVSRAREIFDELSKL---GKDM---KVS 262 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~---~~~ 262 (366)
+..+...+...|++++|..+++.+... +-.+ ...++..++..|...|++++|..+++..... ...| -..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 445555555555555555555554321 1011 1234555555555555555555555544321 0111 012
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344444444555555555444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-06 Score=59.26 Aligned_cols=93 Identities=10% Similarity=-0.039 Sum_probs=63.1
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhh
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 309 (366)
..+...+...|++++|...|+...+..+. +...|..+..++...|++++|+..|++..+.... +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34455566677777777777777766544 5666777777777777777777777777665422 566667777777777
Q ss_pred chHHHHHHHHHHHHh
Q 017743 310 NMKELVQKLLKRMEQ 324 (366)
Q Consensus 310 ~~~~~a~~~~~~m~~ 324 (366)
|++++|...+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777777665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-05 Score=69.36 Aligned_cols=167 Identities=8% Similarity=-0.091 Sum_probs=119.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CCHH----HHHHHHHHHHhcCcHhHHHHHHHHHHh----CCCCCC-HH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLP----TFNSMIINYGKARLQGKAEYVFQKMTA----MKYTPS-FI 227 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~ 227 (366)
.+..+...|...|++++|.+.+..+...-.. ++.. +.+.+-..+...|+++.+..+++.... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3567889999999999999999987653111 1221 222333334456889999999887653 232333 56
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC--CCC-C-C--H
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKL----GK-DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM--GVT-P-D--S 296 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~-p-~--~ 296 (366)
++..+...+...|++++|..+++.+... +. .....++..++..|...|++++|..++++.... .+. | . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999999987643 11 113567888999999999999999999887642 111 2 1 2
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 297 STYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..+..+...+...|++++|...|.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566666777888999999988877754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.1e-06 Score=58.78 Aligned_cols=98 Identities=9% Similarity=0.124 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC--KPD----IITFN 160 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 160 (366)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666677777777777777777776653 33556666667777777777777777776655421 111 45566
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhc
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHS 185 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (366)
.+..++...|++++|.+.|+.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666677777777777666663
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=3e-06 Score=58.92 Aligned_cols=92 Identities=8% Similarity=-0.071 Sum_probs=51.8
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 017743 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275 (366)
Q Consensus 196 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 275 (366)
.+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|...|++..+..+. +...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34444555566666666666555543 234555555555566666666666666665555433 4555555566666666
Q ss_pred ChhHHHHHHHHhhh
Q 017743 276 LPTEADLLFENSHN 289 (366)
Q Consensus 276 ~~~~a~~~~~~~~~ 289 (366)
++++|...+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=4.4e-06 Score=73.13 Aligned_cols=117 Identities=9% Similarity=0.002 Sum_probs=50.5
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 334444555555555444431 1234444445555555555555555555544442 22344444455555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEA--YCMNGLPTEADLLFE 285 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 285 (366)
.+.|++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555554443222 22233333333 444455555555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-05 Score=69.62 Aligned_cols=132 Identities=14% Similarity=0.017 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--------------FITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
...+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|...++...+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566666777777777777777777765421111 4778888889999999999999999988876
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH-HHHHHHh
Q 017743 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK-LLKRMEQ 324 (366)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~-~~~~m~~ 324 (366)
+. +...|..+..+|...|++++|...|++..+... -+...+..+..++.+.++.+++.+ .++.|..
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 788888999999999999999999999888642 256678888888888888877653 4555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-05 Score=67.74 Aligned_cols=123 Identities=11% Similarity=-0.040 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAM---------------KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (366)
.+..+...+.+.|++++|...|++..+. ..+.+...|..+..++.+.|++++|...++...+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3555666677777777777777776651 0122356788888889999999999999999988765
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
. +...|..+..+|...|++++|...|++..+... .+...+..+...+...++.+++.+
T Consensus 305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 678888899999999999999999999887642 267777777777777777776654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-05 Score=54.99 Aligned_cols=90 Identities=14% Similarity=0.037 Sum_probs=40.8
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCH---HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSF---ITYECIITMYGYCDNVSRAREIFDELSKLGKDMK---VSTLNAMLEAY 271 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 271 (366)
...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|+.+.+..+. + ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 344444555555555555544432 1111 24444444445555555555555554443322 1 33344444444
Q ss_pred HhcCChhHHHHHHHHhhh
Q 017743 272 CMNGLPTEADLLFENSHN 289 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~ 289 (366)
...|++++|...|+.+.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 455555555555554444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-06 Score=75.18 Aligned_cols=120 Identities=13% Similarity=-0.026 Sum_probs=96.8
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
...+.+.|++++|...+++..+.. +.+...|..+..++.+.|++++|...+++..+..+. +...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 345567899999999999998874 445889999999999999999999999999998654 788999999999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHH--HHhhchHHHHHHHHH
Q 017743 278 TEADLLFENSHNMGVTPDSSTYKLLYKA--YTKANMKELVQKLLK 320 (366)
Q Consensus 278 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~ 320 (366)
++|.+.+++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999876422 34455555555 888999999999988
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.8e-06 Score=59.64 Aligned_cols=84 Identities=10% Similarity=-0.008 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 240 DNVSRAREIFDELSKLGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
|++++|...|+...+.+. +-+...+..+..+|...|++++|...|++..+.... +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 444445555555444320 112344444555555555555555555555544321 34445555555555555555555
Q ss_pred HHHHHHh
Q 017743 318 LLKRMEQ 324 (366)
Q Consensus 318 ~~~~m~~ 324 (366)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.32 E-value=8.5e-06 Score=70.99 Aligned_cols=131 Identities=12% Similarity=0.024 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT--------------LPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
...+..+...+.+.|++++|...|++.+....... ...|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 33455555666666666666666666655322211 4667777778888888888888888877764
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHhh
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSH 288 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~ 288 (366)
+.+...|..+..+|...|++++|...|+...+..+. +...+..+..++...++.+++. .++..|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777888888888888888888888776544 5566777777777777777665 3444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-05 Score=59.43 Aligned_cols=99 Identities=11% Similarity=-0.039 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhC-------CC----------CCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAM-------KY----------TPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
...+......+.+.|++++|...|.+.... .- +.+...|..+..++.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566666777777777777777776653 00 1112344555555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 254 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+.++. +...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54332 4455555555555555555555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.31 E-value=5e-06 Score=60.75 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCC---CCC--HHHHHHHHHHhhccCcHHHHHHHHHHHHhCC----CC-CCHHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKY---TPS--FITYECIITMYGYCDNVSRAREIFDELSKLG----KD-MKVST 263 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~ 263 (366)
+..+...+...|++++|...+++..+... .+. ..++..+...+...|++++|...++...+.. .. .....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444444455555555555544432210 000 1345555566666666666666666544321 00 01345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNM----GVT-PDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566666777777777777777665532 111 1134566777778888888888888877654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.9e-06 Score=59.67 Aligned_cols=97 Identities=11% Similarity=0.026 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILA-PD----IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ----CKP-DI 156 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 156 (366)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. ..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666777777788888888887776653211 11 1345566666667777777777766654321 000 12
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHH
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLM 183 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (366)
..+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344455555555666666666555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.1e-05 Score=53.53 Aligned_cols=92 Identities=14% Similarity=0.103 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHH
Q 017743 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDI---ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT--LPTFNSMIINY 201 (366)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~ 201 (366)
+...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...|+.+....+... ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 344444555555555555554443211 11 2344444444455555555555554444321110 33344444444
Q ss_pred HhcCcHhHHHHHHHHHHh
Q 017743 202 GKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~ 219 (366)
...|++++|...|+.+.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.5e-05 Score=67.21 Aligned_cols=123 Identities=6% Similarity=-0.039 Sum_probs=91.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHS---------------KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 222 (366)
.+..+...+.+.|++++|++.|++.++. ..+.+..+|..+..+|.+.|++++|...+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 3555666677777777777777776651 012245677888888888999999999999888764
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 017743 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282 (366)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 282 (366)
+.+...+..+..++...|++++|...|+...+..+. +...+..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888899999999999999988887544 66777777777777776666643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.8e-05 Score=58.18 Aligned_cols=101 Identities=9% Similarity=0.012 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHhc--------CC---------CCCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHS--------KE---------KPTLPTFNSMIINYGKARLQGKAEYVFQKM 217 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 217 (366)
....+......+.+.|++++|+..|.+.+.. .. +.+...|..+..+|.+.|++++|...+...
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456667777788888888888888887664 00 112356777777888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
++.. +.+...|..+..++...|++++|...|+...+..
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 7764 4456778888888888888888888888887764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.3e-06 Score=58.32 Aligned_cols=59 Identities=8% Similarity=-0.058 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
+..+..++...|++++|...+++..+.. +-+...+..+..++...|++++|...++...
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333334444444444444444443332 1223333334444444444444444444333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00013 Score=51.89 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=74.8
Q ss_pred CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHH
Q 017743 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEA 280 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 280 (366)
+++++|..+|++..+.+ .|+.. +...|...+.+++|.+.|+...+.| ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35666777777766665 33333 5556666666677777777776664 56666667777766 6677777
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHh----hchHHHHHHHHHHHHhCCC
Q 017743 281 DLLFENSHNMGVTPDSSTYKLLYKAYTK----ANMKELVQKLLKRMEQNGI 327 (366)
Q Consensus 281 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~ 327 (366)
.++|++..+.| +...+..|...|.. .++.++|.++|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777777654 55666667777766 6777777777777777653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.7e-06 Score=68.56 Aligned_cols=149 Identities=9% Similarity=-0.074 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (366)
...+..+...+.+.|++++|...|++.+.. .|+... +...++..++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 344566677778888888888888887663 233221 112233333322211 1367777788
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHhhchHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA-YTKANMKEL 314 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~ 314 (366)
+.+.|++++|...++...+.... +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888776543 6777888888888888888888888888765321 34444444444 234456677
Q ss_pred HHHHHHHHHhC
Q 017743 315 VQKLLKRMEQN 325 (366)
Q Consensus 315 a~~~~~~m~~~ 325 (366)
+...|..|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77788777653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.7e-06 Score=67.61 Aligned_cols=125 Identities=7% Similarity=-0.096 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34555666677778888888888877754 243321 233444444433221 24788899999
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 017743 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 338 (366)
.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+ +.|+.......+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L 304 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRREL 304 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHH
Confidence 99999999999999998865 33788999999999999999999999999876 345544333333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00083 Score=60.02 Aligned_cols=166 Identities=8% Similarity=-0.027 Sum_probs=117.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc----------HhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 017743 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL----------QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (366)
..++|++.++.++..++ .+..+|+.--..+...++ ++++...++.+.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34566777777777532 245566655555555555 788888888888765 456777777777777777
Q ss_pred --cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhh--------
Q 017743 241 --NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA-------- 309 (366)
Q Consensus 241 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 309 (366)
+++++.+.++.+.+..+. +..+|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 668888888888888766 7888888777777888 788888888888887654 778888777776663
Q ss_pred ------chHHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 017743 310 ------NMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342 (366)
Q Consensus 310 ------~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 342 (366)
+.++++++.+++..+. .|+........+.+.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll 236 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLL 236 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHH
Confidence 6788899998888873 455443333333333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00029 Score=62.98 Aligned_cols=173 Identities=6% Similarity=-0.050 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 017743 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM----------IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ- 170 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 170 (366)
.++|.+.+++++.... -+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 4677888888877642 245566666666665555 78888888888776543 6777777777777777
Q ss_pred -ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc---------
Q 017743 171 -AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR-LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--------- 239 (366)
Q Consensus 171 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 239 (366)
+++++++.++++.+... -+..+|+.-...+.+.| .++++.+.+.++++.. +-+...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 66888888888888643 37777877777777777 7888888888887765 44566776665555442
Q ss_pred -----CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 017743 240 -----DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279 (366)
Q Consensus 240 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 279 (366)
+.++++.+.++......+. +...|..+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5678999999998887665 78888888888877776444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00011 Score=52.85 Aligned_cols=62 Identities=10% Similarity=-0.060 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhC-----CCCC-CHHHH----HHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNM-----GVTP-DSSTY----KLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p-~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.|..+..++.+.|++++|+..+++.++. .+.| +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5566666666666666666666665553 0123 34455 6666667777777777777776653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=2.3e-05 Score=56.31 Aligned_cols=85 Identities=11% Similarity=-0.043 Sum_probs=46.8
Q ss_pred hcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV----------SRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
+.+.+++|...++...+.. +.+...|..+..++...+++ ++|+..|++..+.++. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 4455666666666666554 44556666666666665543 3555555555555443 4555555555555
Q ss_pred hcC-----------ChhHHHHHHHHhhh
Q 017743 273 MNG-----------LPTEADLLFENSHN 289 (366)
Q Consensus 273 ~~g-----------~~~~a~~~~~~~~~ 289 (366)
..| ++++|++.|++..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 543 44455555554444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.05 E-value=8.8e-05 Score=53.42 Aligned_cols=61 Identities=13% Similarity=-0.050 Sum_probs=48.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhC-------CCCCCHHHH----HHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKL-------GKDMKVSTL----NAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.|..+..++.+.|++++|+..++...+. ++. +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777778888888888888888887775 443 55677 7888888899999999999888764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.4e-05 Score=66.58 Aligned_cols=126 Identities=6% Similarity=-0.044 Sum_probs=95.5
Q ss_pred HHHhcCcHhHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-----CCC-C-CHHHHH
Q 017743 200 NYGKARLQGKAEYVFQKMTAM-----K-YTP-SFITYECIITMYGYCDNVSRAREIFDELSKL-----GKD-M-KVSTLN 265 (366)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~ 265 (366)
.+...|++++|+.++++..+. | -.| ...+++.|..+|...|++++|..++++..+. |.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999887643 1 112 2468899999999999999999999887642 221 2 346688
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhh-----CCCC-CC-HHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 266 AMLEAYCMNGLPTEADLLFENSHN-----MGVT-PD-SSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.|...|...|++++|+.++++..+ .|.. |+ ..+...+-.++...+++++|..+|.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988753 2321 22 345567777888999999999999999763
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.7e-05 Score=51.33 Aligned_cols=78 Identities=10% Similarity=-0.001 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
+...+++..+.. +.+...+..+...+...|++++|...|+...+..+. +...|..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444432 233445555555555555555555555555554332 344555555555555555555555555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00035 Score=49.58 Aligned_cols=111 Identities=14% Similarity=0.015 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHH
Q 017743 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKE 139 (366)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 139 (366)
.+.++|+++|++..+.. .|+.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 44666666666665421 22222 4455555555666666666666553 45555566666655 566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHhcC
Q 017743 140 MESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSK 186 (366)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 186 (366)
|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666666553 44455555555555 556666666666655543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.6e-05 Score=67.17 Aligned_cols=125 Identities=3% Similarity=-0.046 Sum_probs=95.7
Q ss_pred HHhccCChhHHHHHHHHHHhcC---CCC----CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC-----C-CCCC-HHHHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSK---EKP----TLPTFNSMIINYGKARLQGKAEYVFQKMTAM-----K-YTPS-FITYE 230 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~ 230 (366)
.+...|++++|+.++++.++.. ..+ ...+++.+...|...|++++|..++++..+. | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999999998876531 112 2467899999999999999999999887643 2 1233 46789
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 231 CIITMYGYCDNVSRAREIFDELSK-----LGKD-M-KVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 231 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.|...|...|++++|..++++..+ .|.. | ...+.+.+-.++...+.+++|+.++..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764 2432 1 234456677788889999999999998865
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.3e-05 Score=54.37 Aligned_cols=57 Identities=9% Similarity=-0.002 Sum_probs=21.8
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333333444444444443333322 22233333333444444444444444444333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=8.5e-05 Score=50.22 Aligned_cols=65 Identities=12% Similarity=-0.066 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+...+..+...+...|++++|...|+...+..+. +...+..+..++...|++++|+..+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3455666667777777777777777777766443 5666777777777777777777777777664
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00024 Score=45.91 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 017743 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306 (366)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 306 (366)
..+..+...+...|++++|...++...+..+. +...+..+..++...|++++|...+++..+... .+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 34455555555555666666655555554322 445555555566666666666666665555431 2344444444443
Q ss_pred H
Q 017743 307 T 307 (366)
Q Consensus 307 ~ 307 (366)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=5.3e-05 Score=54.44 Aligned_cols=102 Identities=15% Similarity=0.071 Sum_probs=61.6
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP----------TEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
+.+.+++|.+.++...+.++. +...|..+..++...+++ ++|+..|++.++.+.. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 345566666666666665544 566666666666665543 3666666666665422 4556666666666
Q ss_pred hhc-----------hHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 017743 308 KAN-----------MKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343 (366)
Q Consensus 308 ~~~-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 343 (366)
..| ++++|+..|++..+ +.|+...|...++...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHh
Confidence 553 66666666666666 45666666666655443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00028 Score=48.16 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
.|...|+...+..+. +...+..+...|...|++++|...|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467778888877654 78899999999999999999999999998875 3368889999999999999999999999987
Q ss_pred hC
Q 017743 324 QN 325 (366)
Q Consensus 324 ~~ 325 (366)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 63
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00034 Score=45.16 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...+..+. +...+..+...+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34444444455555555555555544432 223444555555555555555555555555544322 334444444333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00027 Score=46.88 Aligned_cols=62 Identities=23% Similarity=0.126 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 226 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
...+..+..++...|++++|...|+...+.++. +...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555555555555554333 34445555555555555555555555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00049 Score=45.62 Aligned_cols=84 Identities=14% Similarity=0.013 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC-CCCChhHHHHHH
Q 017743 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG-IVPNKRFFLEAL 338 (366)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll 338 (366)
+...+..+...|...|++++|+..|++..+.+.. +...|..+..+|...|++++|...|++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 4455566666666666666666666666654322 44556666666666666666666666655421 123334444444
Q ss_pred HHhhcc
Q 017743 339 ETFSSS 344 (366)
Q Consensus 339 ~~~~~~ 344 (366)
..+...
T Consensus 85 ~~l~~~ 90 (100)
T 3ma5_A 85 DAKLKA 90 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 444333
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0032 Score=52.01 Aligned_cols=74 Identities=11% Similarity=0.049 Sum_probs=44.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHH
Q 017743 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195 (366)
Q Consensus 118 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 195 (366)
+.+..++..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 3455555555555555567777777777666653 55555556666666667777777777666663 34444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0075 Score=49.87 Aligned_cols=76 Identities=12% Similarity=0.031 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232 (366)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (366)
+.+..++..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++.... .|...+|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 5578888888777777899999999999999975 78888888888899999999999999999887 5666665443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0024 Score=41.88 Aligned_cols=55 Identities=13% Similarity=0.017 Sum_probs=27.5
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDMKVS-TLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
.+...|++++|...++.+.+..+. +.. .+..+..++...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334445555555555555544322 334 4555555555555555555555555543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.044 Score=51.33 Aligned_cols=154 Identities=10% Similarity=0.049 Sum_probs=88.2
Q ss_pred HHHhcCCHHHHHH-HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh
Q 017743 95 ACAQARNVDQVNA-LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173 (366)
Q Consensus 95 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (366)
.....+++++|.+ ++..+ ++......++..+.+.|..++|+++.+. |. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHH
Confidence 3445677777765 44111 1122236666777777887777766531 11 1123345678888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
.|.++.+.+ .+...|..+...+.+.++++.|++.|.++.. |..+...+...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 887775433 4667788888888888888888888887653 2333444444555555555544444
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 254 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
..|. ++.-..+|.+.|++++|.+++.++
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4331 233334455566666666665544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0026 Score=41.74 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=30.3
Q ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 199 INYGKARLQGKAEYVFQKMTAMKYTPSFI-TYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
..+...|++++|...+++..+.. +.+.. .+..+..++...|++++|...|+...+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34445555555555555555442 22334 55555555555566666666665555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.005 Score=52.86 Aligned_cols=25 Identities=16% Similarity=-0.064 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
+++.|...|...|++++|..++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444444455555544444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0022 Score=55.03 Aligned_cols=83 Identities=6% Similarity=-0.052 Sum_probs=39.0
Q ss_pred CcHhHHHHHHHHHHhC---CCC---CC-HHHHHHHHHHhhccCcHHHHHHHHHHHHhC-----CC-CC-CHHHHHHHHHH
Q 017743 205 RLQGKAEYVFQKMTAM---KYT---PS-FITYECIITMYGYCDNVSRAREIFDELSKL-----GK-DM-KVSTLNAMLEA 270 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~---~~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li~~ 270 (366)
|++++|+.++++..+. -+. |+ ..+++.|..+|...|++++|..++++..+. |. .| ...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4556666665554431 011 11 244555555555555555555555554321 11 11 12334555555
Q ss_pred HHhcCChhHHHHHHHHh
Q 017743 271 YCMNGLPTEADLLFENS 287 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~ 287 (366)
|...|++++|+.++++.
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 55555555555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.011 Score=38.34 Aligned_cols=65 Identities=9% Similarity=-0.025 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHhhccCc---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 225 SFITYECIITMYGYCDN---VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+...+..+..++...++ .++|..++++..+..+. ++.....+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444432222 35555555555554433 4445555555555555555555555555543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.009 Score=42.43 Aligned_cols=81 Identities=14% Similarity=-0.081 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC---cHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHH
Q 017743 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD---NVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEAD 281 (366)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 281 (366)
...+.+-|.+..+.+ +++..+.-.+..++++.+ +.+++..+|+.+.+.+ .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 334444444444443 244455444555555554 4445666665555543 12 2333344444555566666666
Q ss_pred HHHHHhhh
Q 017743 282 LLFENSHN 289 (366)
Q Consensus 282 ~~~~~~~~ 289 (366)
+.++.+.+
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665555
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0028 Score=54.38 Aligned_cols=87 Identities=8% Similarity=-0.062 Sum_probs=68.9
Q ss_pred ccCChhHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHhcCcHhHHHHHHHHHHhC-----C-CCCC-HHHHHHHH
Q 017743 168 KRQAFDKMEQVFKSLMHS---KEKPT----LPTFNSMIINYGKARLQGKAEYVFQKMTAM-----K-YTPS-FITYECII 233 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~ 233 (366)
..|++++|+.++++.++. -..|+ ..+++.+...|...|++++|+.++++..+. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467899999999987653 12222 467899999999999999999999987643 2 1233 46799999
Q ss_pred HHhhccCcHHHHHHHHHHHHh
Q 017743 234 TMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~ 254 (366)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0078 Score=51.64 Aligned_cols=92 Identities=5% Similarity=-0.066 Sum_probs=61.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHhccCChhHHHHHHHHHHhc-----C-CCCC-HHH
Q 017743 128 MDAYGKNGMIKEMESVLSRMKSNQ---CKP----DIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-----K-EKPT-LPT 193 (366)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~ 193 (366)
+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++.+.. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556678888888887776431 112 2456777777888888888888887776532 1 1222 346
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
++.+...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77778888888888888888777653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.034 Score=35.99 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 259 MKVSTLNAMLEAYCMNGL---PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 259 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
.++..+..+..++...++ .++|..++++..+.+.. +......+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 477888888888876555 79999999999987643 78889999999999999999999999999864
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.03 Score=37.13 Aligned_cols=66 Identities=14% Similarity=-0.071 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKLG------KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+..-+-.+...+...++++.|...|+...+.. -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445556666666666666666666654421 1123455666666666666666666666666553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.089 Score=38.39 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQK 216 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~ 216 (366)
...|..+.......|+++-|++.|.+
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444444444444444444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.08 Score=49.58 Aligned_cols=104 Identities=10% Similarity=0.066 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
...++..+.+.|.++.|.++.+.- ..-.......|++++|.++.+.+ .+...|..+...+.+
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHH
Confidence 377788888889988888766321 11134456789999999886543 377899999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
.++++.|.+.|.++.+ |..+...+...++.+...++-+....
T Consensus 694 ~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp TTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999988743 34445555556666655555444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.033 Score=39.53 Aligned_cols=88 Identities=14% Similarity=0.065 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhhchHHHH
Q 017743 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHNMGVTP--DSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a 315 (366)
.+..+.+-|.+..+.+. ++..+...+..++++.+ +.++++.+++...+.+ .| +...+..+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34445555555544443 35555555666666655 4446666666655543 22 234445555556666666666
Q ss_pred HHHHHHHHhCCCCCChh
Q 017743 316 QKLLKRMEQNGIVPNKR 332 (366)
Q Consensus 316 ~~~~~~m~~~g~~~~~~ 332 (366)
+++++.+.+ +.|+..
T Consensus 91 ~~y~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHh--cCCCCH
Confidence 666666665 445443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.046 Score=36.16 Aligned_cols=66 Identities=6% Similarity=-0.127 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC------CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK------YTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
..-+..+...+...+++..|..+++...+.. -.+...++..+..++.+.|+++.|...++.+.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3344455555555666666666665544320 12334556666666666666666666666666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.079 Score=42.12 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-
Q 017743 64 KALAKALGYFQKMKGMERCKPN---IVTYNILLRACAQ-----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN- 134 (366)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~- 134 (366)
+....|...+++..+. .|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++......++..
T Consensus 177 ~~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 177 DTVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred HhHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 4456666666666653 344 4567777777776 377777777777777764222356666666666663
Q ss_pred CCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 017743 135 GMIKEMESVLSRMKSNQCK--PDIITFNL 161 (366)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 161 (366)
|+.+++.+.+++....... |+....+.
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 7777777777777766544 44444333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.16 Score=34.96 Aligned_cols=140 Identities=15% Similarity=0.022 Sum_probs=83.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 017743 96 CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (366)
+.-.|.+++..++..+..... +..-+|-++.-....-+-+-..++++.+-+. + | ...+|+....
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--D----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-c--C----------cHhhhcHHHH
Confidence 344667777777777766642 4555555665555555555555555554332 1 1 1345555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
...+-.+ ..+...+...+..+...|.-+...+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5555443 124445566666777777777777777775432 2566667777777777777777777777777666
Q ss_pred CC
Q 017743 256 GK 257 (366)
Q Consensus 256 ~~ 257 (366)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 64
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.27 Score=35.84 Aligned_cols=101 Identities=13% Similarity=0.019 Sum_probs=68.7
Q ss_pred HHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 017743 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279 (366)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 279 (366)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345789999999988766 3578999999999999999999999987653 3344444555666666
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHH
Q 017743 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 280 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
..++-+.....| . ++.....+...|+++++.++|.+
T Consensus 79 L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 665555544443 1 34444455556666666666543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.064 Score=37.67 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=42.0
Q ss_pred CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 017743 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342 (366)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 342 (366)
++.++|.++|+.+++.+-.- ...|....+.-.++|+.+.|.+++......+-.| ...+..+|+.+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl~ 139 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNLN 139 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhhh
Confidence 67777777777775542222 6666666666677777888888777777765443 344555555543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.23 Score=34.23 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=67.0
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
.+|++......+-.+- .+....+..+......|+-++-.+++..+... -+|++.....+..||.+.|+..++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHH
Confidence 4566666655554332 24667788888899999999999999996553 47889999999999999999999999
Q ss_pred HHHHHHhCCCC
Q 017743 318 LLKRMEQNGIV 328 (366)
Q Consensus 318 ~~~~m~~~g~~ 328 (366)
++.+..++|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 99999999975
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.17 Score=35.60 Aligned_cols=102 Identities=12% Similarity=0.062 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCChh-hHHHHHHHH------HhcCCHHHHHHHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNV------DQVNALFKELHESILAPDIY-TYNGVMDAY------GKNGMIKEMESVLSRMKS 149 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~------~~~~~~~~a~~~~~~~~~ 149 (366)
+.|..+|-..+...-+.|++ +...++|++.... ++|+.. .+...+..+ ...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45666777777777766777 7777777777764 455421 111111111 122455555555555543
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 017743 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186 (366)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 186 (366)
.+-. =...|......-.+.|+.+.|.+++...+..+
T Consensus 89 ~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 3111 13344444444444555555555555554443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.15 Score=34.75 Aligned_cols=84 Identities=14% Similarity=-0.127 Sum_probs=37.4
Q ss_pred cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHH
Q 017743 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR---AREIFDELSKLG-KDMKVSTLNAMLEAYCMNGLPTEAD 281 (366)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~ 281 (366)
....+.+-|......+ .++..+--.+..++.+..+... ++.+++.+.+.+ +.-.....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444443333 2444444444444444443333 555555555442 1012223333444555555555555
Q ss_pred HHHHHhhhC
Q 017743 282 LLFENSHNM 290 (366)
Q Consensus 282 ~~~~~~~~~ 290 (366)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.64 Score=37.02 Aligned_cols=92 Identities=13% Similarity=0.024 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhc-----CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc-CcH
Q 017743 172 FDKMEQVFKSLMHSKEKPT---LPTFNSMIINYGKA-----RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-DNV 242 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 242 (366)
...|...+++.++ +.|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 3455566666655 3344 44666666666663 67777777777766653211255555666666663 667
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHH
Q 017743 243 SRAREIFDELSKLGKD--MKVSTLN 265 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~--~~~~~~~ 265 (366)
+++.+.+++.....+. |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 7777777776666554 5544443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.11 Score=35.54 Aligned_cols=66 Identities=9% Similarity=-0.031 Sum_probs=27.9
Q ss_pred CChhhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 119 PDIYTYNGVMDAYGKNGMIKE---MESVLSRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 119 ~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
++..+-..+..++++..+... ++.+++++...+.+ -.....-.+.-++.+.|+++.|.+.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443332 44444444443210 1222233334444555555555555555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.32 Score=44.66 Aligned_cols=53 Identities=8% Similarity=-0.023 Sum_probs=36.5
Q ss_pred HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
..+...|+++-|+.+-++....-+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445567777777777777665433 5677777777777777777777777765
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=94.41 E-value=0.6 Score=30.17 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
+.-+..+-++.+...++.|++......+++|.+.+++..|.++++-.+.+- .+....|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHH
Confidence 344566677777777777888888888888888888888888887776442 22244566666544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.3 Score=44.79 Aligned_cols=125 Identities=15% Similarity=0.092 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCC-HHHHHHHHHHHHHC------CCCC-CH--
Q 017743 90 NILLRACAQARN-VDQVNALFKELHESILAPDIYTYN--GVMDAYGKNGM-IKEMESVLSRMKSN------QCKP-DI-- 156 (366)
Q Consensus 90 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~-- 156 (366)
..++..+...++ .+.|..+++++.... |...++. .++..+.+.++ --+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555555 577888888887763 3333322 22333333322 22455555444321 1111 11
Q ss_pred --------HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 017743 157 --------ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217 (366)
Q Consensus 157 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 217 (366)
.....-...+...|+++.|+++-++.... .+.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222234466788899999988888775 3446788999999999999999988888765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.22 Score=42.06 Aligned_cols=55 Identities=15% Similarity=0.031 Sum_probs=25.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|++.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444445555444444444332 224444445555555555555554444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.20 E-value=3.8 Score=38.68 Aligned_cols=216 Identities=9% Similarity=-0.019 Sum_probs=120.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHhccCChhHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhc
Q 017743 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI--DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN--SMIINYGKA 204 (366)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~ 204 (366)
..++-.|+.+....++..+.+.. +..+...+. -++...|+.+.+..+++.+... ..|-...-. ++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCC
Confidence 33456677777777777766542 222232233 3344677888888887777653 222222222 233456677
Q ss_pred CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHH
Q 017743 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP-TEADLL 283 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~ 283 (366)
|+.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .++..+
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 88777777888887642 2233333333334444566666677776666543 34444444555555555554 567788
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhhc---------hHHHHHHHHHHHHh-CCCCCChhHHHHHHHHhhcccccCCCCCc
Q 017743 284 FENSHNMGVTPDSSTYKLLYKAYTKAN---------MKELVQKLLKRMEQ-NGIVPNKRFFLEALETFSSSLAGSQSGSA 353 (366)
Q Consensus 284 ~~~~~~~~~~p~~~~~~~l~~~~~~~~---------~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~~~~~ 353 (366)
+..+.. .+|..+-...+.++...| +....++.+..... +.-.++......+-++....|+....-+.
T Consensus 652 L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~ 728 (963)
T 4ady_A 652 LDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQL 728 (963)
T ss_dssp HHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECS
T ss_pred HHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 888765 245555544444444333 34444444444443 23456677777788888888777544443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.72 E-value=4.8 Score=38.07 Aligned_cols=261 Identities=10% Similarity=-0.042 Sum_probs=146.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-------CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHH--HHHH
Q 017743 92 LLRACAQARNVDQVNALFKELHESIL-------APDIYTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDII--TFNL 161 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~ 161 (366)
+.-+....|..+++..++...+...- .+....-..+.-+++-.|. -+++.+.+..+....- +... .--.
T Consensus 417 laLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalA 495 (963)
T 4ady_A 417 YGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALG 495 (963)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 33445556665677777777665421 0111122233333333343 2456666666655321 1111 1123
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHH--HHHHHHHhhcc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT--YECIITMYGYC 239 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 239 (366)
+...+...|+.+....++..+.+. ...+..-...+.-++...|+.+.+..+.+.+.... .|.... ..++.-+|+..
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTS
T ss_pred HhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCC
Confidence 344466778888888888777653 22222223333344456789999999988888642 232222 23445678888
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchH-HHHHHH
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK-ELVQKL 318 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~ 318 (366)
|+.....+++..+.+.. ..++.....+.-++...|+.+.+.+++..+.+.+ .|...--..+.-+....|.. .++..+
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 99888878998888753 2234433344445556788888888887776654 44444444444444444443 567778
Q ss_pred HHHHHhCCCCCChhHHHHHHHHhhcccccCCCC--Cccchhhhh
Q 017743 319 LKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG--SAKTDLTRS 360 (366)
Q Consensus 319 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~--~~~~~~~r~ 360 (366)
+..+.. .+|..+-...+.+++.-+...... .....+.|.
T Consensus 652 L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~ 692 (963)
T 4ady_A 652 LDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKN 692 (963)
T ss_dssp HHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHH
T ss_pred HHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHH
Confidence 888874 356666667777777776653322 234444444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=93.68 E-value=1.1 Score=30.70 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=44.7
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
.-+..+-++.+...++.|++......+++|.+.+++..|.++|+-.+.+ ..+....|..+++-+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 3456666777777778888888888888888888888888888877754 223345566666654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.26 E-value=3.6 Score=35.35 Aligned_cols=188 Identities=9% Similarity=0.021 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccC
Q 017743 100 RNVDQVNALFKELHES-----ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY----GKRQ 170 (366)
Q Consensus 100 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 170 (366)
|+++.|.+.+..+.+. +...+......++..|...++++...+.+..+....-.. ......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 6788888877666543 234455667788888999999988888777665442222 22223333322 2222
Q ss_pred ChhH--HHHHHHHHHh---cCCCC---CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC--CCCCC---HHHHHHHHHHhh
Q 017743 171 AFDK--MEQVFKSLMH---SKEKP---TLPTFNSMIINYGKARLQGKAEYVFQKMTAM--KYTPS---FITYECIITMYG 237 (366)
Q Consensus 171 ~~~~--a~~~~~~~~~---~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 237 (366)
..+. -..+.+.... ..+.. .......+...+...|++.+|..++..+... +.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1111111111 11111 1223345666677777777777777776532 21111 234556666777
Q ss_pred ccCcHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 238 YCDNVSRAREIFDELSK----LGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
..+++..|..++..+.. ....|+ ...+...+..+...+++.+|.+.|.+..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77777777777766532 111111 2345556666666777777766655543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.85 E-value=3.3 Score=40.56 Aligned_cols=61 Identities=10% Similarity=-0.024 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDI----YTYNGVMDAYGKNGMIKEMESVLSRMKS 149 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 149 (366)
|..++..+-+.+.++.+.+.-...++...+-+. ..|..+.+.+...|++++|...+..+..
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 344444444444444444444443332111111 1234444444444555555444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.7 Score=38.98 Aligned_cols=55 Identities=13% Similarity=-0.018 Sum_probs=30.0
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (366)
++..+...|++.++...+..+.... +.+...|..++.++...|+..+|.+.|+.+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555555555555554432 344555555666666666666665555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.57 E-value=5 Score=39.35 Aligned_cols=211 Identities=14% Similarity=0.008 Sum_probs=128.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC------------------
Q 017743 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE------------------ 187 (366)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------ 187 (366)
.++..+...+..+-+.++..- ++.+....-.+..++...|++++|.+.|.+.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccc
Confidence 344455556666655554432 2335555556677889999999999999775221 1
Q ss_pred -----CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC
Q 017743 188 -----KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKD 258 (366)
Q Consensus 188 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (366)
..-..-|..++..+.+.+.++.+.++-+..++...+.+ ...|..+.+.+...|++++|...+-.+.....+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 01123467788888889999999888877665421222 236888999999999999999999888776543
Q ss_pred CCHHHHHHHHHHHHhcCChhH------------HHHHHHHhhh-C-CCCCCHHHHHHHHHHHHhhchHHHH-HHHHHHHH
Q 017743 259 MKVSTLNAMLEAYCMNGLPTE------------ADLLFENSHN-M-GVTPDSSTYKLLYKAYTKANMKELV-QKLLKRME 323 (366)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~------------a~~~~~~~~~-~-~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~m~ 323 (366)
......|+...+..|..+. ..+++....+ . .+...+.-|..|-.-....|++..| .-+|+...
T Consensus 971 --~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 6677778887777655444 3334332111 1 1121223455555556666766544 44455544
Q ss_pred hCC----C-C-----CChhHHHHHHHHhhcc
Q 017743 324 QNG----I-V-----PNKRFFLEALETFSSS 344 (366)
Q Consensus 324 ~~g----~-~-----~~~~~~~~ll~~~~~~ 344 (366)
+.+ . . .-...|..+|++++--
T Consensus 1049 RL~~~~~~~~~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B 1049 RYISTTELIGKKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhhccccccchhHHHHHHHHHHHHHHHhcC
Confidence 321 1 1 1135677777777554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.11 E-value=1.6 Score=28.28 Aligned_cols=48 Identities=15% Similarity=-0.002 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.-+..+-++.+......|++....+.+.+|.+.+++..|.++++..+.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444555555555555566666666666666666666665555543
|
| >3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=91.02 E-value=4.8 Score=33.30 Aligned_cols=25 Identities=8% Similarity=0.357 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELH 113 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~ 113 (366)
...+|.-|...++.++|.+.++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4567777888888888888887754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.66 E-value=7.5 Score=33.40 Aligned_cols=187 Identities=9% Similarity=0.012 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHH----HHHhcCC
Q 017743 66 LAKALGYFQKMKG----MERCKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYTYNGVMD----AYGKNGM 136 (366)
Q Consensus 66 ~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~----~~~~~~~ 136 (366)
++.|++.+..+.+ ......+......++..|...++++...+.+..+.+. |..+ .....+++ .......
T Consensus 32 ~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 32 CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcCCc
Confidence 4555544433332 1223445566677777777777777776666555432 2211 11222222 2222222
Q ss_pred HHH--HHHHHHHHH---HCCCCC---CHHHHHHHHHHHhccCChhHHHHHHHHHHhc--CCCCC---HHHHHHHHHHHHh
Q 017743 137 IKE--MESVLSRMK---SNQCKP---DIITFNLLIDSYGKRQAFDKMEQVFKSLMHS--KEKPT---LPTFNSMIINYGK 203 (366)
Q Consensus 137 ~~~--a~~~~~~~~---~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~ 203 (366)
.+. -..+.+.+. +..+-. .......|...+...|++.+|.+++..+... +..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 221 111111110 011111 1223345667777778888888887776432 11111 3456666777777
Q ss_pred cCcHhHHHHHHHHHHh----CCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 204 ARLQGKAEYVFQKMTA----MKYTPS--FITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
.+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7888888777776532 222222 23456666666677777777776666543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.59 E-value=3 Score=28.66 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 017743 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303 (366)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 303 (366)
+.-+..+-++.+...+..|++....+.+.+|-+.+++..|.++|+-.+.+ ..+....|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 33445555566666666677777777777777777777777777766543 223344455554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.58 E-value=3.7 Score=28.20 Aligned_cols=24 Identities=8% Similarity=-0.100 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 126 GVMDAYGKNGMIKEMESVLSRMKS 149 (366)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~ 149 (366)
.+.-++.+.|++++|.+..+.+.+
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333344444444444444444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.84 E-value=5.8 Score=27.24 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3345555555554432112333444455555555555555555555553
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.33 E-value=7 Score=30.68 Aligned_cols=116 Identities=15% Similarity=0.024 Sum_probs=77.8
Q ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCC
Q 017743 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGL 276 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~ 276 (366)
....+.|.+++++.....-++.. +.|...-..+++.+|-.|+++.|.+-++.+.+..+.. ....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 44567899999999888888775 6678888899999999999999999998888764331 22234444433
Q ss_pred hhHHHHHHHHhhhCC-----CCCCHHHHHHHHHHHH--hhchHHHHHHHHHHHHhC
Q 017743 277 PTEADLLFENSHNMG-----VTPDSSTYKLLYKAYT--KANMKELVQKLLKRMEQN 325 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~ 325 (366)
+..-.+...-+ +.....-...++.+.. ..|+.++|..+-....+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222222221 1223445566666654 469999999998888654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=85.89 E-value=0.0062 Score=51.91 Aligned_cols=216 Identities=11% Similarity=0.134 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
|+..|..++.+..+.|.+++-.+.+...++.. -+...=+.|+-+|++.++..+..+++. .||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 44456666677777777777666665554432 233444566667777666554333321 244444455555
Q ss_pred HHhccCChhHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC
Q 017743 165 SYGKRQAFDKMEQVFKSLMHS--------------------KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 224 (366)
-|...|.++.|.-+|..+... .-..++.||-.+-.+|...+.+.-|.-.--.++-. |
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H
Confidence 555555555555444432211 01235678888888888888888776554444422 2
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCC------CHH
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM-GVTP------DSS 297 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p------~~~ 297 (366)
+ -...++..|...|.+++-+.+++.-.... ......|+-|.-.|++- ++++..+.++..-.. +++- ...
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 1 12346778888999999999998877543 34788899998888876 666666665543321 2211 123
Q ss_pred HHHHHHHHHHhhchHHHHH
Q 017743 298 TYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~ 316 (366)
.|.-++-.|.+-.+++.|.
T Consensus 306 LW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcchhHHHHH
Confidence 4555555566666666553
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=85.70 E-value=0.00013 Score=61.78 Aligned_cols=200 Identities=13% Similarity=0.111 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
.+..|..|..+....+++.+|++-|-+ . -|+..|..++.+..+.|.+++-.+++....+..- +...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 445688899999999988888776622 2 2677889999999999999999999887776533 3444567899
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC--------------------CCC
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--------------------YTP 224 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~ 224 (366)
+|++.++..+..+++ ..|+..-...+..-|...|.++.|.-+|..+.... -..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999877654433 23566666677777888888887776666543211 123
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 304 (366)
++.||..+-.+|...+.+.-|.-.--.+.-. +.-...++..|-..|.+++.+.+++.-.... +....+|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 4556777777777777766655443333321 1122345666777788888777777655321 233444444333
Q ss_pred H
Q 017743 305 A 305 (366)
Q Consensus 305 ~ 305 (366)
.
T Consensus 272 L 272 (624)
T 3lvg_A 272 L 272 (624)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.33 E-value=7.5 Score=27.09 Aligned_cols=67 Identities=4% Similarity=-0.096 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 017743 84 PNIVTYNILLRACAQARN---VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 150 (366)
|+..+--.+..+++++.. ..+++.+++.+.+.+..-.......+.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444444444444444443 2244444544444322112223333344444555555555555544443
|
| >2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A | Back alignment and structure |
|---|
Probab=84.62 E-value=6.1 Score=31.88 Aligned_cols=25 Identities=8% Similarity=0.357 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELH 113 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~ 113 (366)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567777888888888888887753
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.58 E-value=11 Score=32.12 Aligned_cols=97 Identities=7% Similarity=-0.133 Sum_probs=54.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh---CCCCCCHH--HHH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKE--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTA---MKYTPSFI--TYE 230 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~--~~~ 230 (366)
+...+...|.+.|+++.|.+.+.++...-. ..-...+-.++..+...+++..+...+.+... .+..|+.. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455667777777777777777777765422 22345566666777777777777777766542 22122221 112
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHh
Q 017743 231 CIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 231 ~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 223334455666666666555443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.53 E-value=13 Score=31.83 Aligned_cols=119 Identities=11% Similarity=-0.026 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChhHHHH
Q 017743 102 VDQVNALFKELHESI-LAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCKPDIITFNLLIDSYGKRQAFDKMEQ 177 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~ 177 (366)
+++..+......+.. ... -..+...+...|.+.|++++|.+.+.++... +...-...+-.++..+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 444444444444422 111 2346788999999999999999999999764 233346778888999999999999999
Q ss_pred HHHHHHhc---CCCCCHHHHH--HHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 178 VFKSLMHS---KEKPTLPTFN--SMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 178 ~~~~~~~~---~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
.+.++... +..|+...-. .-...+...+++..|...|-+....
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 99887542 3333322111 1112234568899888888776543
|
| >2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A | Back alignment and structure |
|---|
Probab=82.54 E-value=4.1 Score=27.95 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=35.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCC
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL--PTEADLLFENSHNMGVT 293 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 293 (366)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456677777777788887777776532111 12333334444443322 34456666666665544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.01 E-value=6.9 Score=30.70 Aligned_cols=113 Identities=4% Similarity=-0.047 Sum_probs=70.9
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHhhcc
Q 017743 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS----FITYECIITMYGYC 239 (366)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 239 (366)
....+.|+++++++....-++. -+.|...-..+++.+|-.|++++|..-++...+.. |+ ...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH----
Confidence 4466788888888888877776 34577778888888899999999988888877653 43 2344444432
Q ss_pred CcHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHh--cCChhHHHHHHHHhhh
Q 017743 240 DNVSRAREIFDELSKLGKD-----MKVSTLNAMLEAYCM--NGLPTEADLLFENSHN 289 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~ 289 (366)
+..=.....-+-. ....-...++.+... .|+.++|.++-..+.+
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1111222222211 123344455555443 5888888888777654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.70 E-value=4.9 Score=28.86 Aligned_cols=23 Identities=4% Similarity=-0.230 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHH
Q 017743 195 NSMIINYGKARLQGKAEYVFQKM 217 (366)
Q Consensus 195 ~~li~~~~~~~~~~~a~~~~~~~ 217 (366)
..+.+++...+++..|...|++.
T Consensus 67 ~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 67 VYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 33444455555555555555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.29 E-value=11 Score=26.19 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3455556666555433223333344555566666666666666666553
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.00 E-value=8.9 Score=24.73 Aligned_cols=50 Identities=6% Similarity=0.040 Sum_probs=24.2
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
+...|++++|..+.+.. ..||...|.++-. .+.|..+++...+..+...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 44555555555444333 3455555444322 34455555555555555444
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.31 E-value=9.5 Score=24.64 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=23.9
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
+...|++++|..+.+.. ..||...|.++-. .+.|..+++...+..+...|
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 44555555555544433 3455555444332 24455555555554444444
|
| >2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A | Back alignment and structure |
|---|
Probab=80.26 E-value=5.2 Score=28.35 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=40.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCCC
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL--PTEADLLFENSHNMGVTPD 295 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~ 295 (366)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567778888888889998888887532221 22333444444444322 3456677777776665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.44 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.43 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.39 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.31 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.3 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.23 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.18 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.17 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.94 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.84 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.81 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.78 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.77 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.76 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.66 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.65 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.62 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.57 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.56 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.45 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.37 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.3 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.19 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.19 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.18 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.12 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.08 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.08 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.05 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.02 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.98 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.95 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.94 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.8 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.66 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.45 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.43 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.11 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.94 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.74 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.51 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.91 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.73 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.02 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 94.49 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.04 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.16 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.67 | |
| d2nsza1 | 129 | Programmed cell death 4, PDCD4 {Mouse (Mus musculu | 82.21 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1e-19 Score=153.68 Aligned_cols=313 Identities=11% Similarity=0.058 Sum_probs=243.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 017743 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95 (366)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (366)
+...+.+.|++++|.+.|+++.+. .| +...+..+...+... |++++|+..|++..+.. +.+..+|..+..+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~ 76 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQC----RRLDRSAHFSTLAIKQN--PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 445667788888888888888765 34 345566666666643 44888888888876532 4456778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC---------------------------------------------------------
Q 017743 96 CAQARNVDQVNALFKELHESILA--------------------------------------------------------- 118 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~--------------------------------------------------------- 118 (366)
+...|++++|...+....+....
T Consensus 77 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
T d1w3ba_ 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHH
Confidence 88888888888887766543211
Q ss_pred ----------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC
Q 017743 119 ----------PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188 (366)
Q Consensus 119 ----------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 188 (366)
.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...... +
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 234 (388)
T d1w3ba_ 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-h
Confidence 122344555666777899999999999887763 3367788889999999999999999999988763 4
Q ss_pred CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268 (366)
Q Consensus 189 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 268 (366)
.+...+..+...+.+.|++++|...+++..+.. +.+..++..+..++...|++++|...++......+. +...+..+.
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 312 (388)
T d1w3ba_ 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHH
Confidence 467778888999999999999999999998875 445788999999999999999999999998887543 788899999
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhcc
Q 017743 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN-KRFFLEALETFSSS 344 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~ 344 (366)
..+...|++++|++.|++..+... -+..++..+...+...|++++|...|++..+ +.|+ ...+..+-..+.+.
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999988642 3678889999999999999999999999987 4565 44566655555443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.6e-18 Score=144.03 Aligned_cols=290 Identities=9% Similarity=0.048 Sum_probs=238.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCC-------
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER------- 81 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~------- 81 (366)
++.++..+...+.+.|++++|...|+...+.. | +...+..+...+. ..|++++|+..+........
T Consensus 32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~ 105 (388)
T d1w3ba_ 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYK----ERGQLQEAIEHYRHALRLKPDFIDGYI 105 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhh----hhccccccccccccccccccccccccc
Confidence 57788889999999999999999999998763 4 4566777777776 44447777777666543210
Q ss_pred -----------------------------------------------------------CCCCHHHHHHHHHHHHhcCCH
Q 017743 82 -----------------------------------------------------------CKPNIVTYNILLRACAQARNV 102 (366)
Q Consensus 82 -----------------------------------------------------------~~~~~~~~~~l~~~~~~~~~~ 102 (366)
.+.+...+..+...+...|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (388)
T d1w3ba_ 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcH
Confidence 112345566677788889999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 017743 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (366)
+.|...+++..+.. +-+..++..+...+...|++++|...+....... +.+...+..+...+.+.|++++|...|++.
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 263 (388)
T d1w3ba_ 186 WLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988864 3366788899999999999999999999988764 346778888999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH
Q 017743 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262 (366)
Q Consensus 183 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 262 (366)
.+.. +.+..++..+...+...|++++|...++...... +.+...+..+...+...|++++|...|++..+..+. +..
T Consensus 264 l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 340 (388)
T d1w3ba_ 264 IELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAA 340 (388)
T ss_dssp HHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH
Confidence 8863 3467889999999999999999999999988764 667888999999999999999999999999887654 678
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhch
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 311 (366)
++..+..+|...|++++|...|++..+..+. +...|..+..++.+.||
T Consensus 341 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999886422 57888999888887765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.5e-14 Score=117.37 Aligned_cols=219 Identities=9% Similarity=0.055 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 017743 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 145 (366)
+++|+..|+++.+.. |.+..+|..+..++...|++++|...|.+..+.. +-+...+..+...+...|++++|.+.++
T Consensus 35 ~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~ 111 (323)
T d1fcha_ 35 LPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILR 111 (323)
T ss_dssp HHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccccccchh
Confidence 444444444444321 2234444444444555555555555554444432 1133444444444445555555555544
Q ss_pred HHHHCCCC--------------CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCcHhHH
Q 017743 146 RMKSNQCK--------------PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKA 210 (366)
Q Consensus 146 ~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a 210 (366)
........ .+.......+..+...+.+.+|.+.+.+...... ..+...+..+...+...|++++|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A 191 (323)
T d1fcha_ 112 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 191 (323)
T ss_dssp HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhh
Confidence 44432110 0000111112223344556777777777665432 23566777777788888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
...+++..... +-+..+|..+..++...|++++|.+.|+...+..+. +..+|..+..+|.+.|++++|+..|++.++
T Consensus 192 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 192 VDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888877654 345677788888888888888888888888776544 577788888888888888888888887765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2e-14 Score=117.97 Aligned_cols=230 Identities=8% Similarity=-0.028 Sum_probs=186.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (366)
.....+.+.|++++|...|+++++.. +-+..+|..+..++...|++++|...+.+..+... -+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 45667889999999999999999874 33678899999999999999999999999987643 36788888999999999
Q ss_pred ChhHHHHHHHHHHhcCCCC--------------CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 017743 171 AFDKMEQVFKSLMHSKEKP--------------TLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITM 235 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~--------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 235 (366)
++++|.+.++......... +.......+..+...+.+.++...+.+..+.. -.++..++..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999999987643210 00011112233445567788888888877543 23457788889999
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 315 (366)
+...|++++|...|+......+. +...|..+...|...|++++|.+.|++..+... -+..+|..+..+|.+.|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999887655 688999999999999999999999999988642 3678899999999999999999
Q ss_pred HHHHHHHHh
Q 017743 316 QKLLKRMEQ 324 (366)
Q Consensus 316 ~~~~~~m~~ 324 (366)
+..|++.++
T Consensus 260 ~~~~~~al~ 268 (323)
T d1fcha_ 260 VEHFLEALN 268 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.7e-10 Score=93.45 Aligned_cols=249 Identities=7% Similarity=-0.015 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
...++.+...+.+.+..++|+++++++++.. |-+..+|+....++...| ++++|+..++...+... -+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhH
Confidence 3456677777888889999999999999874 335667788888888766 58999999999877643 37888888889
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC----
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD---- 240 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 240 (366)
.+.+.|++++|++.++++++.. +.+...|..+...+...|++++|...++.+++.+ +.+...|+.+...+.+.+
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 9999999999999999998863 3468889999999999999999999999998875 445667776665554443
Q ss_pred --cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhh--------
Q 017743 241 --NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-DSSTYKLLYKAYTKA-------- 309 (366)
Q Consensus 241 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-------- 309 (366)
.+++|...+....+..+. +...|+.+...+.. ...+++.+.++...+....+ +...+..++..|...
T Consensus 199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 367888888888887654 67777777665544 44677777777776543322 455666666666443
Q ss_pred -chHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHh
Q 017743 310 -NMKELVQKLLKRMEQNGIVPNK-RFFLEALETF 341 (366)
Q Consensus 310 -~~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~ 341 (366)
..+++|.+++..+.+. +.|-. ..|..+.+.+
T Consensus 277 ~~~~~ka~~l~~~l~~~-~DpiR~~yw~~~~~~l 309 (315)
T d2h6fa1 277 EDILNKALELCEILAKE-KDTIRKEYWRYIGRSL 309 (315)
T ss_dssp HHHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 3355666666655443 23322 3344444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.43 E-value=1.4e-10 Score=93.93 Aligned_cols=187 Identities=16% Similarity=0.159 Sum_probs=145.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHH
Q 017743 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215 (366)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 215 (366)
..++|..+|+...+...+.+...|...+..+.+.|+++.|..+|++++..........|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888888887655556677888888888899999999999998876444445678888888888899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CC
Q 017743 216 KMTAMKYTPSFITYECIITM-YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-VT 293 (366)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~ 293 (366)
...+.+ +.+...|...... +...|+.+.|..+|+.+.+..+. +...|...+..+...|+++.|..+|++..... ..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 988765 3334444433332 33467899999999999887444 68889999999999999999999999987753 23
Q ss_pred CC--HHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 294 PD--SSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 294 p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
|+ ...|...+..-...|+.+.+.++++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 45788888888889999999999998876
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=2.4e-10 Score=92.49 Aligned_cols=220 Identities=8% Similarity=0.020 Sum_probs=164.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh--------------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 017743 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQ--------------ARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132 (366)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 132 (366)
+++..+|+++... ++.+...|...+..+.. .+..++|..+|++..+...+.+...+...+....
T Consensus 33 ~Rv~~vyerAl~~--~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3444455554432 24455566555554432 2345788899999887654556667788888889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCcHhHHH
Q 017743 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKARLQGKAE 211 (366)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~ 211 (366)
+.|++++|..+|+.+.+........+|...+..+.+.|+.+.|.++|+.+.+.... +...|...... +...|+.+.|.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence 99999999999999987644434567889999999999999999999999886443 34444433332 34568999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK-DM--KVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
.+|+.+.... +.+...|...+..+...|+++.|..+|++..+... .| ....|...+..-...|+.+.+.++++++.
T Consensus 190 ~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998763 55678899999999999999999999999887643 33 24678888888888999999999999876
Q ss_pred hC
Q 017743 289 NM 290 (366)
Q Consensus 289 ~~ 290 (366)
+.
T Consensus 269 ~~ 270 (308)
T d2onda1 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=5.1e-10 Score=88.02 Aligned_cols=219 Identities=8% Similarity=-0.113 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 017743 66 LAKALGYFQKMKGMERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 143 (366)
.+.++..+++........+ ...+|..+..+|.+.|++++|.+.|++.++.. +-+..+|+.+..++.+.|++++|++.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4555555666654222222 23467778889999999999999999999875 34678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC
Q 017743 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223 (366)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 223 (366)
|+++.+... .+..++..+..++...|+++.|.+.|+...+..+ .+......+..++.+.+..+....+..........
T Consensus 94 ~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 94 FDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred hhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 999988643 3567788888999999999999999999887633 34544444455555666666666666655554322
Q ss_pred CCHHHHHHHHHHhhcc----CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 224 PSFITYECIITMYGYC----DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 224 ~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
+. .+. ++..+... +..+.+...+......... ...+|..+...+...|++++|.+.|+......
T Consensus 172 ~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 172 QW--GWN-IVEFYLGNISEQTLMERLKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp ST--HHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hh--hhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 21 222 12222211 2222222222221111111 23456667778888888888888888877653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=5.6e-11 Score=97.52 Aligned_cols=278 Identities=9% Similarity=0.007 Sum_probs=183.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhh-HHHHH---HHHhhc---hHHHHHHHHHHHHHHHHhcCCCCCCCHH
Q 017743 15 SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV-YNALI---TAHLHT---RDKAKALAKALGYFQKMKGMERCKPNIV 87 (366)
Q Consensus 15 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~-~~~ll---~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 87 (366)
..++....+....++|+++++...+. .|+..+ |+..- ..+... ....+.+++|+.+++...+.. +.+..
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~ 108 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYG 108 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHH
Confidence 33433333444458999999999875 566543 43322 211111 124566888999999887532 55677
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 88 TYNILLRACAQAR--NVDQVNALFKELHESILAPDIYTYN-GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 88 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
.|..+..++...+ ++++|...+..+.+.. +++...+. .....+...+..++|+..++.+.+... -+...|..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~ 186 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSC 186 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 7777777776655 4889999999988864 33455544 344666778899999999998887754 37788888888
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (366)
++.+.|++++|...+....+. .|+ .......+...+..+++...+....... +++...+..+...+...++.++
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~ 260 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELE 260 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHH
Confidence 888888888776655544332 111 1122333455566777777777766654 3444455566666677788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHH
Q 017743 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYT 307 (366)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 307 (366)
|...+....+.++. +...+..+..++...|++++|.+.+++..+.+ |+ ..-|..+...+.
T Consensus 261 a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 261 SCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHHh
Confidence 88888887776543 56777778888888888888888888888753 43 444555544444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=5.5e-10 Score=90.37 Aligned_cols=216 Identities=6% Similarity=-0.032 Sum_probs=169.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 017743 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ-AFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200 (366)
Q Consensus 122 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 200 (366)
..++.+...+.+.+..++|+++++++.+... -+...|+....++...| ++++|+..++..++.. +-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 4566677778889999999999999998743 36778888888888876 5899999999998863 3478899999999
Q ss_pred HHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 017743 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL---- 276 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 276 (366)
+.+.|++++|+..+.++.+.. +.+...|..+...+...|++++|...++.+.+.++. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 999999999999999999875 556889999999999999999999999999998766 78888888777777665
Q ss_pred --hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhc
Q 017743 277 --PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP-NKRFFLEALETFSS 343 (366)
Q Consensus 277 --~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~ 343 (366)
+++|++.+....+..+ .+...|..+...+...| .+++...++...+....+ +...+..+...+..
T Consensus 200 ~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 5788889988888653 37777877766655444 466777777776543222 23344555555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=2.8e-09 Score=87.58 Aligned_cols=271 Identities=11% Similarity=-0.001 Sum_probs=170.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh------hhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC-
Q 017743 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP------SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN- 85 (366)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~------~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 85 (366)
........+...|++++|.+++++..+. .|+. ..+..+-..+. ..|++++|+..|++......-.++
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~ 87 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLH----CKGELTRSLALMQQTEQMARQHDVW 87 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhhcch
Confidence 3444567778899999999999998775 3332 12333333444 555688888888776532111112
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----
Q 017743 86 ---IVTYNILLRACAQARNVDQVNALFKELHES----ILAPD---IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ---- 151 (366)
Q Consensus 86 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---- 151 (366)
...+..+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+.......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 167 (366)
T d1hz4a_ 88 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 167 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence 345566677788888988888888776542 11111 1244556677778888888888888776532
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcC--CCCC----HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC--
Q 017743 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK--EKPT----LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-- 223 (366)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-- 223 (366)
.......+......+...+++..+...+....... .... ...+..+...+...|+++.|...++........
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 247 (366)
T d1hz4a_ 168 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 247 (366)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccc
Confidence 22234455556666777788888877776654321 1111 233455566677778888888888776654322
Q ss_pred -CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 224 -PSFITYECIITMYGYCDNVSRAREIFDELSKL----GKDM-KVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 224 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.....+..+..++...|++++|...++..... +..| ....+..+...|...|++++|.+.+++..+
T Consensus 248 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 248 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22345566777788888888888888776532 2222 234566677778888888888888777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=6.2e-09 Score=85.51 Aligned_cols=263 Identities=11% Similarity=0.051 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHh
Q 017743 62 KAKALAKALGYFQKMKGMERCKPN---IVTYNILLRACAQARNVDQVNALFKELHESILA-PD----IYTYNGVMDAYGK 133 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~ 133 (366)
..|++++|++++++......-.+. ...+..+...+...|++++|...+++..+.... ++ ...+..+...+..
T Consensus 24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (366)
T d1hz4a_ 24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 103 (366)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 445699999999987753211111 346777888999999999999999988764211 11 2345666778889
Q ss_pred cCCHHHHHHHHHHHHH----CCCCC---CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC----CCCHHHHHHHHHHHH
Q 017743 134 NGMIKEMESVLSRMKS----NQCKP---DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE----KPTLPTFNSMIINYG 202 (366)
Q Consensus 134 ~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~ 202 (366)
.|++..+...+..... .+... ....+..+...+...|+++.+...+........ ......+......+.
T Consensus 104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (366)
T d1hz4a_ 104 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 183 (366)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999998887653 22111 123555677888999999999999988876432 223445566667778
Q ss_pred hcCcHhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHh
Q 017743 203 KARLQGKAEYVFQKMTAM----KYTPS--FITYECIITMYGYCDNVSRAREIFDELSKLGKD---MKVSTLNAMLEAYCM 273 (366)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~ 273 (366)
..++...+...+...... +..+. ...+..+...+...|++++|...++........ .....+..+...+..
T Consensus 184 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 263 (366)
T d1hz4a_ 184 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 263 (366)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 889999988888765532 11111 234566677788899999999999887665332 234556678889999
Q ss_pred cCChhHHHHHHHHhhh----CCCCCC-HHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 274 NGLPTEADLLFENSHN----MGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.|++++|...++.... .+..|+ ...+..+...+...|++++|.+.+++..+
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 264 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999988763 233333 45678888899999999999999998754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=9.9e-10 Score=86.31 Aligned_cols=218 Identities=13% Similarity=-0.016 Sum_probs=147.9
Q ss_pred CHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 017743 101 NVDQVNALFKELHESILAP---DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177 (366)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 177 (366)
+.+.++.-++++....... ...++..+..+|.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 3455666666666542111 23467778889999999999999999998864 3478899999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC
Q 017743 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257 (366)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (366)
.|+++.+..+ .+..++..+..++...|++++|...++...+.. +.+......+...+.+.+..+.+..+.........
T Consensus 93 ~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 93 AFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 9999998643 356678888999999999999999999998764 34454444445555566666666666565555432
Q ss_pred CCCHHHHHHHHHHHHhcCChh----HHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 258 DMKVSTLNAMLEAYCMNGLPT----EADLLFENSHNMGVTP-DSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~----~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
.+ ..++ ++..+....... .+...+..... ..| ...+|..+...+...|++++|...|++.....
T Consensus 171 ~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 171 EQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22 1222 222222221211 11111111111 112 23467778899999999999999999998743
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=1.6e-10 Score=94.70 Aligned_cols=257 Identities=8% Similarity=-0.061 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHH----------HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 017743 66 LAKALGYFQKMKGMERCKPNIVTYNILLRA----------CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 135 (366)
.++|+++++++.... |-+...|+..-.. +...|++++|...++...+.. +-+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 378888998887532 3344455443332 223445789999999988874 336677777777776655
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHH
Q 017743 136 --MIKEMESVLSRMKSNQCKPDIITFN-LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212 (366)
Q Consensus 136 --~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 212 (366)
+++++...+..+.+... ++...+. .....+...+.++.|+..++.++...+ -+...|..+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHH
Confidence 58899999999987643 3455554 455677788999999999999988643 478889999999999999888766
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 017743 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292 (366)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 292 (366)
.+....+. .|.. ..+...+...+..+++...+.......+. +...+..+...+...|++++|...+.+.....+
T Consensus 200 ~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 273 (334)
T d1dcea1 200 QGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENK 273 (334)
T ss_dssp CCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 55544332 1211 12223344556667777778777766543 455566777788888999999999998887642
Q ss_pred CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHH
Q 017743 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336 (366)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 336 (366)
.+...+..+...+...|+.++|.+.+++..+ +.|+..-|..
T Consensus 274 -~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~ 314 (334)
T d1dcea1 274 -WCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLD 314 (334)
T ss_dssp -HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHH
T ss_pred -hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHH
Confidence 2567788899999999999999999999988 5676554433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=9.1e-08 Score=70.91 Aligned_cols=138 Identities=13% Similarity=-0.019 Sum_probs=75.2
Q ss_pred HhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 017743 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 281 (366)
...|+++.|++.|..+. +|+..+|..+..++...|++++|.+.|++..+.++. +...|..+..+|.+.|++++|.
T Consensus 16 ~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHH
Confidence 44455555555554321 344445555555555555555555555555554433 4455555555555555555555
Q ss_pred HHHHHhhhCC------------C--CC-CHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 017743 282 LLFENSHNMG------------V--TP-DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 282 ~~~~~~~~~~------------~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 344 (366)
+.|++..... . .+ ...++..+..++.+.|++++|.+.+....+....+........|....+.
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~~ 168 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQ 168 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh
Confidence 5555543210 0 01 12455566667777778888877777777665555556666666655544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2e-07 Score=69.00 Aligned_cols=123 Identities=11% Similarity=0.060 Sum_probs=66.6
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
+...|+++.|++.|.++ .+|+..+|..+..+|...|++++|++.|++.++.+ +.+...|..+..++.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHH
Confidence 34455555555555443 23344445555555555555555555555555443 23344555555555555555555
Q ss_pred HHHHHHHHhCCC--------------CC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 017743 246 REIFDELSKLGK--------------DM-KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293 (366)
Q Consensus 246 ~~~~~~~~~~~~--------------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 293 (366)
...|+....... .+ ...++..+..++.+.|++++|.+.+....+....
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 555555433210 00 1245556777788888888888888887765433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=1.4e-07 Score=75.09 Aligned_cols=195 Identities=8% Similarity=-0.068 Sum_probs=103.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-----CCHHHHHHHH
Q 017743 129 DAYGKNGMIKEMESVLSRMKSN----QCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-----PTLPTFNSMI 198 (366)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li 198 (366)
..|...+++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|.+.+++....... ....++..+.
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 3444555555555555544321 1111 1234555566666666666666666654332100 0123344445
Q ss_pred HHHHh-cCcHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC------HHHHHH
Q 017743 199 INYGK-ARLQGKAEYVFQKMTAM----KYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMK------VSTLNA 266 (366)
Q Consensus 199 ~~~~~-~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 266 (366)
..|.. .|++++|...+++..+. +.++. ..++..+...+...|++++|...|+.+........ ...+..
T Consensus 125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (290)
T d1qqea_ 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (290)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH
Confidence 45533 47777777777665432 21111 34567777778888888888888887766432211 122344
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCC-CC---HHHHHHHHHHHHh--hchHHHHHHHHHHHH
Q 017743 267 MLEAYCMNGLPTEADLLFENSHNMGVT-PD---SSTYKLLYKAYTK--ANMKELVQKLLKRME 323 (366)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~--~~~~~~a~~~~~~m~ 323 (366)
.+..+...|+++.|...+++..+..+. ++ ......++.++.. .+.+++|+..|+.+.
T Consensus 205 ~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555666778888888888887765321 11 2234445555544 234666666665443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=4.7e-07 Score=71.93 Aligned_cols=238 Identities=10% Similarity=-0.010 Sum_probs=156.4
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 017743 29 LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL 108 (366)
Q Consensus 29 ~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 108 (366)
++.+++.+..+.+ +|....+. ++ .. ....++++|.++|.+. ...|...|++++|.+.
T Consensus 3 ~~~~~l~~aek~~-~~~~~~~~-~~---~~--~~~~~~~~Aa~~y~~a----------------a~~y~~~~~~~~A~~~ 59 (290)
T d1qqea_ 3 DPVELLKRAEKKG-VPSSGFMK-LF---SG--SDSYKFEEAADLCVQA----------------ATIYRLRKELNLAGDS 59 (290)
T ss_dssp CHHHHHHHHHHHS-SCCCTHHH-HH---SC--CSHHHHHHHHHHHHHH----------------HHHHHHTTCTHHHHHH
T ss_pred CHHHHHHHHHHhc-CcchhHHH-Hh---cC--CccccHHHHHHHHHHH----------------HHHHHHCcCHHHHHHH
Confidence 4556666665543 33332222 21 11 1344577777776654 5678899999999999
Q ss_pred HHHHHHcC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHh-ccCChhHHHH
Q 017743 109 FKELHESI----LAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN----QC-KPDIITFNLLIDSYG-KRQAFDKMEQ 177 (366)
Q Consensus 109 ~~~~~~~~----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~-~~~~~~~a~~ 177 (366)
|.+..+.. -++ -..+|..+..+|.+.|++++|.+.++...+. |. .....++..+...|. ..|+++.|++
T Consensus 60 y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 139 (290)
T d1qqea_ 60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID 139 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHH
Confidence 99887631 111 2357888899999999999999999976542 11 112445566666664 4699999999
Q ss_pred HHHHHHhc----CCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC-----C-HHHHHHHHHHhhccCcHHHHH
Q 017743 178 VFKSLMHS----KEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP-----S-FITYECIITMYGYCDNVSRAR 246 (366)
Q Consensus 178 ~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~-~~~~~~l~~~~~~~~~~~~a~ 246 (366)
.+++..+. +..+ -..++..+...+...|++++|...++++....... . ...+...+..+...|+++.|.
T Consensus 140 ~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~ 219 (290)
T d1qqea_ 140 CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHH
Confidence 99987542 1111 13457788999999999999999999988653211 1 123344555667789999999
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHHHHh--cCChhHHHHHHHHhhh
Q 017743 247 EIFDELSKLGKDM----KVSTLNAMLEAYCM--NGLPTEADLLFENSHN 289 (366)
Q Consensus 247 ~~~~~~~~~~~~~----~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~ 289 (366)
..++...+..+.. .......++.++.. .+.+++|+..|+.+.+
T Consensus 220 ~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 220 RTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 9999988764321 12345667777655 2457888888876654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=4.1e-07 Score=65.08 Aligned_cols=118 Identities=14% Similarity=-0.009 Sum_probs=85.4
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 276 (366)
....|.+.|++++|...|++..+.. +.+...|..+..++...|++++|...|+...+.++. +..+|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCC
Confidence 3456778888888888888888765 456778888888888888888888888888887655 67888888888888888
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHH--HHhhchHHHHHH
Q 017743 277 PTEADLLFENSHNMGVTPDSSTYKLLYKA--YTKANMKELVQK 317 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~ 317 (366)
+++|...+++....... +...+..+..+ ....+.++++..
T Consensus 94 ~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888876422 44444444333 233344555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.6e-07 Score=63.36 Aligned_cols=87 Identities=15% Similarity=-0.007 Sum_probs=41.2
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 315 (366)
+...|++++|...|+...+..+. +...|..+..+|...|++++|+..+....+.+ +.+...|..+..++...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHH
Confidence 34444455555555444444333 44444444445555555555555555444443 22444444444455555555555
Q ss_pred HHHHHHHHh
Q 017743 316 QKLLKRMEQ 324 (366)
Q Consensus 316 ~~~~~~m~~ 324 (366)
+..|++..+
T Consensus 91 ~~~~~~a~~ 99 (117)
T d1elwa_ 91 KRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 555554444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=5.5e-07 Score=60.60 Aligned_cols=87 Identities=13% Similarity=-0.006 Sum_probs=37.0
Q ss_pred HHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 017743 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 280 (366)
+.+.|++++|+..|.+.++.. +.+...|..+..++...|++++|...+....+.++. +...|..+..++...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHHH
Confidence 334444444444444444332 223334444444444444444444444444443322 344444444444444444444
Q ss_pred HHHHHHhhh
Q 017743 281 DLLFENSHN 289 (366)
Q Consensus 281 ~~~~~~~~~ 289 (366)
+..|++..+
T Consensus 91 ~~~~~~a~~ 99 (117)
T d1elwa_ 91 KRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=3e-07 Score=68.63 Aligned_cols=100 Identities=10% Similarity=-0.043 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268 (366)
Q Consensus 189 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 268 (366)
|+...+......+.+.|++++|+..|.+.++.. +.+...|..+..+|.+.|++++|...|+...+..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 677778888899999999999999999988775 567889999999999999999999999999987654 688899999
Q ss_pred HHHHhcCChhHHHHHHHHhhhC
Q 017743 269 EAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
.+|...|++++|+..|++..+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=7.8e-07 Score=63.59 Aligned_cols=101 Identities=8% Similarity=0.050 Sum_probs=67.0
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (366)
...|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|...|+..++.. +-+..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 445667777777777777776653 3356667777777777777777777777776654 44456777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHH
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNA 266 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++|...++......+. +...+..
T Consensus 95 ~eA~~~~~~a~~~~p~-~~~~~~~ 117 (159)
T d1a17a_ 95 RAALRDYETVVKVKPH-DKDAKMK 117 (159)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHH
Confidence 7777777777765433 3444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.65 E-value=4.1e-05 Score=59.41 Aligned_cols=227 Identities=13% Similarity=0.008 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPDIITFN 160 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (366)
|+..+..|...+...+++++|++.|++..+.| +...+..|...|.. ..+...+...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34556666667777788888888888877765 55566666666665 557777888877777664 223333
Q ss_pred HHHHHHh----ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hcCcHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 161 LLIDSYG----KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG----KARLQGKAEYVFQKMTAMKYTPSFITYECI 232 (366)
Q Consensus 161 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (366)
.+...+. ...+.+.|...++.....|.. .....+...+. .......+...+...... .+...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 3333322 245667777777777665432 22222222222 234455666666665553 345556666
Q ss_pred HHHhhc----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 017743 233 ITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304 (366)
Q Consensus 233 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 304 (366)
...+.. ..+...+...++...+.| +......+...|.. ..++++|...|....+.| ++..+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 665553 455667777777777665 55566666655655 457888888888887766 4556666666
Q ss_pred HHHh----hchHHHHHHHHHHHHhCCCCC
Q 017743 305 AYTK----ANMKELVQKLLKRMEQNGIVP 329 (366)
Q Consensus 305 ~~~~----~~~~~~a~~~~~~m~~~g~~~ 329 (366)
.|.+ ..+.++|.++|++..+.|-.+
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 6654 336777888888887777443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.62 E-value=4.3e-07 Score=67.75 Aligned_cols=100 Identities=7% Similarity=-0.023 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233 (366)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 233 (366)
|+...+......+.+.|++++|+..|++.+... +.+...|..+..+|.+.|+++.|+..|+..++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 677888888999999999999999999998864 4578899999999999999999999999999764 34578899999
Q ss_pred HHhhccCcHHHHHHHHHHHHhC
Q 017743 234 TMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
.++...|++++|...|+...+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.57 E-value=6.7e-07 Score=59.61 Aligned_cols=89 Identities=10% Similarity=-0.009 Sum_probs=65.1
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhch
Q 017743 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311 (366)
Q Consensus 232 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 311 (366)
+...+.+.|++++|...|+......+. +...|..+..++.+.|++++|+..+++..+... .+...|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCC
Confidence 344566677788888777777776554 677777777777788888888888877777642 257777777777888888
Q ss_pred HHHHHHHHHHH
Q 017743 312 KELVQKLLKRM 322 (366)
Q Consensus 312 ~~~a~~~~~~m 322 (366)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887777764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=4.2e-07 Score=61.46 Aligned_cols=94 Identities=12% Similarity=-0.090 Sum_probs=48.0
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC---cHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 017743 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD---NVSRAREIFDELSKLGKDMK-VSTLNAMLEAY 271 (366)
Q Consensus 196 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 271 (366)
.+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.+ ++++|..+++.+...+..|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34455555555556666655555543 344455555555554433 23345555555554433222 12444555555
Q ss_pred HhcCChhHHHHHHHHhhhC
Q 017743 272 CMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~ 290 (366)
.+.|++++|.+.|+++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 5555555555555555553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.50 E-value=0.00011 Score=56.87 Aligned_cols=100 Identities=15% Similarity=0.034 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
|+..+..|...+.+.+++++|++.|++..+.| +...+-.|-..+........+...|...+..... .-+....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~----~~~~~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD----LNYSNGC 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc----ccccchh
Confidence 45677777777888888999998888887765 3333333333333211112235666666666554 2233333
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 017743 90 NILLRACAQ----ARNVDQVNALFKELHESI 116 (366)
Q Consensus 90 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 116 (366)
..+...+.. ..+.+.|...++...+.|
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hccccccccccccchhhHHHHHHHhhhhhhh
Confidence 344333332 345666666666665554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.4e-06 Score=58.83 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=54.8
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCCCCCC-HHHHHHHHHHH
Q 017743 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL---PTEADLLFENSHNMGVTPD-SSTYKLLYKAY 306 (366)
Q Consensus 231 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 306 (366)
.+++.+...+++++|.+.|+.....++. ++.++..+..++.+.++ +++|+.+++++...+..|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 3445555566666666666666665433 55555556666554333 3346666666555432222 12455556666
Q ss_pred HhhchHHHHHHHHHHHHhCCCCCChhH
Q 017743 307 TKANMKELVQKLLKRMEQNGIVPNKRF 333 (366)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~~g~~~~~~~ 333 (366)
.+.|++++|++.|+++.+ +.|+..-
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~~~ 107 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQNNQ 107 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHhhhHHHHHHHHHHHH--hCcCCHH
Confidence 666666666666666665 3455443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.44 E-value=1.3e-06 Score=58.10 Aligned_cols=88 Identities=8% Similarity=-0.049 Sum_probs=50.5
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
...+.+.|++++|...|++.+... +-+..+|..+..++.+.|++++|...|+...+..+. +...|..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence 344555566666666666655543 223555566666666666666666666665555433 455566666666666666
Q ss_pred hHHHHHHHHh
Q 017743 278 TEADLLFENS 287 (366)
Q Consensus 278 ~~a~~~~~~~ 287 (366)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=2e-05 Score=56.62 Aligned_cols=82 Identities=12% Similarity=-0.064 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 017743 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306 (366)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 306 (366)
.+|+.+..+|.+.|++++|...++...+.++. ++..|..+..+|...|++++|...|++..+.++. |......+....
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 35677888888999999999999999887655 7888999999999999999999999998886522 555555555444
Q ss_pred Hhhc
Q 017743 307 TKAN 310 (366)
Q Consensus 307 ~~~~ 310 (366)
.+.+
T Consensus 141 ~~~~ 144 (170)
T d1p5qa1 141 QRIR 144 (170)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.1e-05 Score=57.94 Aligned_cols=78 Identities=9% Similarity=-0.053 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
.+|+.+..+|.+.|++++|+..++..++.. +.+..++..+..++...|++++|...|+...+.++. +......+-.+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 346667778888888888888888888765 446778888888888888888888888888886543 555555444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.19 E-value=0.0008 Score=53.41 Aligned_cols=268 Identities=11% Similarity=0.114 Sum_probs=148.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (366)
||..--..+.+.|.+.|.++.|..+|..+. .|..++..+.+.++ ++.|.+++.+. .+..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~----~~~avd~~~k~-------~~~~~ 71 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGE----YQAAVDGARKA-------NSTRT 71 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTC----HHHHHHHHHHH-------TCHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhcc----HHHHHHHHHHc-------CCHHH
Confidence 444445567788889999999999997654 36666667775554 77777777654 36678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
|..+...+.+......+. +.......+......++..|-..|.+++...+++..... -..+...++.++..|++
T Consensus 72 ~k~~~~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 72 WKEVCFACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHHHHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHH
Confidence 888888888887765542 223333445666677889999999999999999987643 24577788888888888
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHH----------HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLP----------TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (366)
.+. ++..+.++... ...+.. .|.-++..|.+.|+++.|..+. ..+ +++..-....+..+.+
T Consensus 146 ~~~-~kl~e~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k 216 (336)
T d1b89a_ 146 FKP-QKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITK 216 (336)
T ss_dssp TCH-HHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHH
T ss_pred hCh-HHHHHHHHhcc---ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHc
Confidence 653 34444443321 111211 1333444444455554443322 111 2222223334444555
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHH-------------HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 017743 239 CDNVSRAREIFDELSKLGKDMKVSTLN-------------AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305 (366)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 305 (366)
..+.+...++.....+.. | ...+ .++..+-+.+++......++.....| +..+.+.+...
T Consensus 217 ~~N~e~~~~~i~~yL~~~--p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~l 289 (336)
T d1b89a_ 217 VANVELYYRAIQFYLEFK--P--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNL 289 (336)
T ss_dssp CSSTHHHHHHHHHHHHHC--G--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHcC--H--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHH
Confidence 556555555555444321 1 1223 34444555555555555665555544 45678888888
Q ss_pred HHhhchHHHHHHH
Q 017743 306 YTKANMKELVQKL 318 (366)
Q Consensus 306 ~~~~~~~~~a~~~ 318 (366)
|...++++.-.+.
T Consensus 290 yie~~d~~~l~~~ 302 (336)
T d1b89a_ 290 FITEEDYQALRTS 302 (336)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HhCcchhHHHHHH
Confidence 8888876554433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.19 E-value=5.7e-05 Score=53.07 Aligned_cols=119 Identities=12% Similarity=-0.012 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCC----CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKY----TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 268 (366)
.+..-...+.+.|++.+|...|.+....-. .++.... ..... ....+|..+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~~----~~~~~~~Nla 74 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKKN----IEISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------Hhhhh----HHHHHHhhHH
Confidence 444555667778888888888887765311 0111100 00000 0123556677
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 017743 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 338 (366)
.+|.+.|++++|++.++..++.+ +.+..+|..+..++...|++++|+..|++..+ +.|+.......+
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l 141 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSY 141 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHH
T ss_pred HHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 77777777777777777777665 33667777777777777777777777777776 345544443333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.3e-06 Score=74.86 Aligned_cols=227 Identities=7% Similarity=-0.042 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhcCCCCChh-hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 017743 29 LAMWLFSEMRNSGCRPDPS-VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI-VTYNILLRACAQARNVDQVN 106 (366)
Q Consensus 29 ~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 106 (366)
+|.+.|++..+. +|+.. .+..+-..+. ..+++++| ++++... .|+. ..++..- ..-...+..+.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~----~~~~l~ea---ye~~i~~---dp~~a~~~~~e~--~Lw~~~y~~~i 69 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWT----SRQALQDL---YQKMLVT---DLEYALDKKVEQ--DLWNHAFKNQI 69 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHH----HHHHHHHH---HHHHHHH---CHHHHHHHTHHH--HHHHHHTHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHH----HHchHHHH---HHHHHHc---ChhhHHHHhHHH--HHHHHHHHHHH
Confidence 677888888764 66643 4444444444 44557665 5555431 2321 1111111 11111234566
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 107 ALFKELHESILAPDIYTYNGVMDAY--GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
+.++...+....++..-....+..+ ...+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+.....
T Consensus 70 e~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 148 (497)
T d1ya0a1 70 TTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS 148 (497)
T ss_dssp HHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHH
T ss_pred HHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 6666666544334433333222222 22344555554444433322 23566677788888899999999888877654
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHH
Q 017743 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264 (366)
Q Consensus 185 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 264 (366)
.. ...++..+...+...+++++|...|++..+.. +.+...|+.+...+...|+..+|...|.+...... |-..++
T Consensus 149 ~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~ 223 (497)
T d1ya0a1 149 YI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAAS 223 (497)
T ss_dssp HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHH
T ss_pred CC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHH
Confidence 21 23567778888899999999999999998875 45578999999999999999999999999988754 477888
Q ss_pred HHHHHHHHhcC
Q 017743 265 NAMLEAYCMNG 275 (366)
Q Consensus 265 ~~li~~~~~~g 275 (366)
..|...+.+..
T Consensus 224 ~nL~~~~~~~~ 234 (497)
T d1ya0a1 224 TNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 88888776544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.18 E-value=8.9e-05 Score=52.01 Aligned_cols=125 Identities=11% Similarity=0.043 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (366)
...+..-...+.+.|++.+|+..|.+.+..-..... .. +.... .... .....+|..+..+
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~-------------~~-~~~~~--~~~~----~~~~~~~~Nla~~ 76 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-------------WD-DQILL--DKKK----NIEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-------------CC-CHHHH--HHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh-------------hh-hHHHH--Hhhh----hHHHHHHhhHHHH
Confidence 345566677889999999999999998764211000 00 00000 0000 0123467778888
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 302 (366)
|.+.|++++|+..++...+.++. +..+|..+..++...|++++|...|+...+.++. |..+...+
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l 141 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY 141 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 88999999999999998887654 7888889999999999999999999988876422 44444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.6e-05 Score=54.02 Aligned_cols=91 Identities=11% Similarity=0.120 Sum_probs=41.3
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC-CC-----HHHHHHHHHH
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD-MK-----VSTLNAMLEA 270 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~li~~ 270 (366)
+...+.+.|++++|+..|.+.++.+ +.+...+..+..+|...|++++|...++.+.+..+. +. ..+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555443 233444555555555555555555555554432111 00 1233344444
Q ss_pred HHhcCChhHHHHHHHHhh
Q 017743 271 YCMNGLPTEADLLFENSH 288 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~ 288 (366)
+...+++++|++.|+...
T Consensus 89 ~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 444445555555544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=3e-05 Score=52.69 Aligned_cols=93 Identities=12% Similarity=0.059 Sum_probs=44.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC--CCC----HHHHHHHHH
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY--TPS----FITYECIIT 234 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~~ 234 (366)
.+...+...|++++|+..|.+.++..+ .+...+..+..+|.+.|++++|...++++++... ... ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555422 2445555555555555555555555555443210 000 123444444
Q ss_pred HhhccCcHHHHHHHHHHHHh
Q 017743 235 MYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~ 254 (366)
.+...+++++|...|.....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 45555555555555554443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=6.3e-05 Score=53.85 Aligned_cols=81 Identities=11% Similarity=-0.053 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 017743 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305 (366)
Q Consensus 226 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 305 (366)
...|..+..++.+.|++++|+..++.+.+..+. ++..|..+..++...|++++|+..|+...+... .+......+...
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 445666777777888888888888888777654 677788888888888888888888888777542 245555554444
Q ss_pred HHh
Q 017743 306 YTK 308 (366)
Q Consensus 306 ~~~ 308 (366)
..+
T Consensus 155 ~~~ 157 (169)
T d1ihga1 155 KQK 157 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.08 E-value=0.00011 Score=52.47 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 017743 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306 (366)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 306 (366)
.+|..+..+|.+.|++++|+..++...+.++. +...|..+..++...|++++|...|+++....+ .+......+-...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 35666778888899999999999998887654 788888899999999999999999999888652 3555555544444
Q ss_pred HhhchHH-HHHHHHHHH
Q 017743 307 TKANMKE-LVQKLLKRM 322 (366)
Q Consensus 307 ~~~~~~~-~a~~~~~~m 322 (366)
...+... ...+.+..|
T Consensus 143 ~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 4433332 234444444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=4e-05 Score=54.97 Aligned_cols=80 Identities=6% Similarity=-0.095 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269 (366)
Q Consensus 190 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 269 (366)
....+..+..++.+.|++++|+..+...++.. +.+...|..+..++...|++++|...|+...+..+. +......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34456677788888899999999998888875 456778888888899999999999999988887544 5555555554
Q ss_pred HH
Q 017743 270 AY 271 (366)
Q Consensus 270 ~~ 271 (366)
+.
T Consensus 154 ~~ 155 (169)
T d1ihga1 154 VK 155 (169)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.05 E-value=0.00014 Score=52.47 Aligned_cols=122 Identities=14% Similarity=0.012 Sum_probs=83.9
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 276 (366)
........|++++|.+.|....... +... +......+.+...-..+... ....+..+...+...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 3345677899999999998888652 1100 00001101111111222221 24567788899999999
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh-----CCCCCChhH
Q 017743 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-----NGIVPNKRF 333 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~ 333 (366)
+++|+..++.+..... -+...|..++.++...|+.++|++.|+++.+ .|+.|+..+
T Consensus 83 ~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 83 ASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred chHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999999988763 4888999999999999999999999998743 599998765
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.02 E-value=2.7e-05 Score=54.14 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----------ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhh
Q 017743 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-----------LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309 (366)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 309 (366)
.+++|...|+...+.++. +..+|..+..+|...| .+++|.+.|++..+. .|+...|..-+..+
T Consensus 56 ~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~--- 129 (145)
T d1zu2a1 56 MIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT--- 129 (145)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH---
Confidence 345566666666665444 5556666666655443 356777777777764 46655555444333
Q ss_pred chHHHHHHHHHHHHhCCC
Q 017743 310 NMKELVQKLLKRMEQNGI 327 (366)
Q Consensus 310 ~~~~~a~~~~~~m~~~g~ 327 (366)
..|..++.+..+.|+
T Consensus 130 ---~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 ---AKAPQLHAEAYKQGL 144 (145)
T ss_dssp ---HTHHHHHHHHHHSSS
T ss_pred ---HHHHHHHHHHHHHhc
Confidence 345666666666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=8.3e-06 Score=69.79 Aligned_cols=227 Identities=11% Similarity=0.060 Sum_probs=127.1
Q ss_pred HHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHH
Q 017743 68 KALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAPDI-YTYNGVMDAYGKNGMIKEMESVLS 145 (366)
Q Consensus 68 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~ 145 (366)
+|.+.|++.... +|+ ...+..+..++...+++++| |++++... |+. ...+..-..+ ...+..+.+.++
T Consensus 4 eA~q~~~qA~~l---~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw--~~~y~~~ie~~r 73 (497)
T d1ya0a1 4 QSAQYLRQAEVL---KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW--NHAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHH---HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH--HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH--HHHHHHHHHHHH
Confidence 677888887653 444 44667777888888888776 66666542 221 1111111111 112445666777
Q ss_pred HHHHCCCCCCHHHHHHHH--HHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC
Q 017743 146 RMKSNQCKPDIITFNLLI--DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223 (366)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 223 (366)
...+....++..-....+ ......+.++.++..+....+. ..++...+..+...+.+.|+.+.|...+.......
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV-DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 666554333332222211 1222345555555555544332 23355667777788888899999888877765421
Q ss_pred CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 017743 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303 (366)
Q Consensus 224 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 303 (366)
...++..+...+...|++++|...|+...+..+. +...|+.+...+...|+..+|...|.+..... +|-..++..|.
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence 2356778888899999999999999999988665 77899999999999999999999999988775 56788888888
Q ss_pred HHHHhhc
Q 017743 304 KAYTKAN 310 (366)
Q Consensus 304 ~~~~~~~ 310 (366)
..+.+..
T Consensus 228 ~~~~~~~ 234 (497)
T d1ya0a1 228 KALSKAL 234 (497)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7776543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.98 E-value=0.00022 Score=50.79 Aligned_cols=79 Identities=11% Similarity=0.025 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
+|+.+..+|.+.|++++|+..++...... +.+..+|..+..++...|++++|...|+.+.+..+. +......+-....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 45556777788888888888888887764 556777888888888888888888888888876543 4555554444433
Q ss_pred h
Q 017743 273 M 273 (366)
Q Consensus 273 ~ 273 (366)
.
T Consensus 144 ~ 144 (168)
T d1kt1a1 144 K 144 (168)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.95 E-value=0.00016 Score=52.05 Aligned_cols=122 Identities=9% Similarity=0.069 Sum_probs=85.7
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (366)
........|++++|.+.|...+.... .... .......-+...-..+.. .....+..+..++...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~r--G~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWR--GPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCC--SSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCc--cccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 34567889999999999999987421 1100 000000011111111111 123567788889999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh-----hCCCCCCHHH
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH-----NMGVTPDSST 298 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~ 298 (366)
+++|...++.+.+..+. +...|..++.++...|+..+|++.|+++. +.|+.|+..+
T Consensus 83 ~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred chHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999999999988655 88999999999999999999999999874 3588998765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.94 E-value=1.6e-05 Score=61.40 Aligned_cols=122 Identities=10% Similarity=-0.011 Sum_probs=77.8
Q ss_pred HhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 017743 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 281 (366)
.+.|++++|+..+++.++.. +.+...+..+...++..|++++|...++...+..+. +...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence 45688888888888888775 556778888888888888888888888888776543 3445554544444433333332
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.-.......+-+++...+......+...|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22111111121222334444556677889999999998888763
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.80 E-value=9.3e-05 Score=51.35 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=74.4
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 017743 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----------NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 306 (366)
-+.+.+++|...|+...+..+. +...+..+..++.. .+.+++|+..|++..+.++ -+..+|..+..+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-hhhHHHhhHHHHH
Confidence 3445567777777777666544 56666666666553 2445789999999988763 3788899998888
Q ss_pred Hhhch-----------HHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 017743 307 TKANM-----------KELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343 (366)
Q Consensus 307 ~~~~~-----------~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 343 (366)
...|+ ++.|.+.|++..+ +.|+...+...+..+.+
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~~k 131 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAK 131 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHT
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHHHH
Confidence 77654 6889999999988 66888888877776643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.66 E-value=5.7e-05 Score=58.23 Aligned_cols=52 Identities=6% Similarity=-0.015 Sum_probs=27.9
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
+.|++++|+..+++.++. .+.+...+..+...++..|++++|...++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445555555555555554 2234555555555555555555555555555544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.45 E-value=0.016 Score=45.74 Aligned_cols=241 Identities=8% Similarity=0.041 Sum_probs=140.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 017743 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93 (366)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 93 (366)
|..++..+.+.++++.|.+++.+. -+..+|..+...+..... ... ..+.. .....+......++
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e----~~l-----a~i~~-~~~~~~~d~l~~~v 106 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE----FRL-----AQMCG-LHIVVHADELEELI 106 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTC----HHH-----HHHTT-TTTTTCHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcH----HHH-----HHHHH-HHhhcCHHHHHHHH
Confidence 445777777888888877776543 256678777777764332 211 12221 22244666667899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------HHHHHHHHHH
Q 017743 94 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD--------IITFNLLIDS 165 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~ 165 (366)
..|-..|.+++...+++..... -..+...++.++..|++.+ .++..+.+...... ..+. ...|..++..
T Consensus 107 ~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~-y~~~k~~~~c~~~~l~~elv~L 183 (336)
T d1b89a_ 107 NYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFL 183 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHHHHhcccc-CCHHHHHHHHHHcCChHHHHHH
Confidence 9999999999999999987643 2456778888999888864 44444444433111 1111 1123445555
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH----------
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM---------- 235 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---------- 235 (366)
|.+.|+++.|..+.-. ..++..-....+..+.+..+.+...++.....+. .|+ ..+.++..
T Consensus 184 y~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~~r~ 254 (336)
T d1b89a_ 184 YDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRA 254 (336)
T ss_dssp HHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHH
T ss_pred HHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCHHHH
Confidence 6666666655544322 1223333444556666777777666666655542 232 22333333
Q ss_pred ---hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 017743 236 ---YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285 (366)
Q Consensus 236 ---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (366)
+.+.+++......++...+.| +..+.+++...|...++++.-.+..+
T Consensus 255 V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 255 VNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 344445555555555544444 45788899999999998766544443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.43 E-value=0.0018 Score=45.24 Aligned_cols=90 Identities=10% Similarity=-0.088 Sum_probs=57.4
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCC-C----------CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-----CCCCC---
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKD-M----------KVSTLNAMLEAYCMNGLPTEADLLFENSHNM-----GVTPD--- 295 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~-~----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~--- 295 (366)
.+...|++++|+..|++..+.... | ....|+.+..+|...|++++|...+++.... ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666665542111 1 1345777777788888888887777766532 11222
Q ss_pred --HHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 296 --SSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 296 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
...+..+..+|...|++++|+..|++..+
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566777888999999999998888664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.35 E-value=0.003 Score=43.96 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=52.3
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCC-CC----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 017743 88 TYNIL--LRACAQARNVDQVNALFKELHESILA-PD----------IYTYNGVMDAYGKNGMIKEMESVLSRMKSN---- 150 (366)
Q Consensus 88 ~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 150 (366)
+|..+ ...+...|++++|++.|++.++.... |+ ..+|+.+..+|.+.|++++|...+++....
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 44555667888888888777753211 11 234566666666777776666666655431
Q ss_pred -CCCCC-----HHHHHHHHHHHhccCChhHHHHHHHHHH
Q 017743 151 -QCKPD-----IITFNLLIDSYGKRQAFDKMEQVFKSLM 183 (366)
Q Consensus 151 -~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (366)
...++ ...+..+..+|...|++++|+..|++..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1134445555556666666666655543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.0031 Score=39.62 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=12.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
++..+..++.+.|++++|...++++.+.
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.0035 Score=39.36 Aligned_cols=60 Identities=12% Similarity=0.022 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 125 NGVMDAYGKNGMIKEMESVLSRMKSNQ-----CKPD-IITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 125 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
..+...+.+.|++++|...|++..+.. ..++ ..++..+..++.+.|++++|++.++++++
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 344444455555555555554443220 0111 23344444444444444444444444444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.74 E-value=0.036 Score=37.00 Aligned_cols=81 Identities=10% Similarity=0.044 Sum_probs=41.1
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----hch
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK----ANM 311 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~ 311 (366)
.+.++|...++...+.| ++.....|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 44555555555555544 33444444444433 234556666666665554 33334444444433 235
Q ss_pred HHHHHHHHHHHHhCC
Q 017743 312 KELVQKLLKRMEQNG 326 (366)
Q Consensus 312 ~~~a~~~~~~m~~~g 326 (366)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666666555
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.51 E-value=0.053 Score=36.09 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHH
Q 017743 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKE 139 (366)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 139 (366)
.++++|+++|++..+. + +...+..|.. ....+.++|.+.+++..+.| +......|...|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~-g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACEL-N---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHT-T---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHC-C---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHH
Confidence 3466777777766542 1 2222222221 22345556666666655544 33334444444432 234555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHhc
Q 017743 140 MESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHS 185 (366)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 185 (366)
|.++|+...+.| ++.....|...|.. ..+.++|.++|+...+.
T Consensus 78 A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 78 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 555555555543 22233333333322 23445555555554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.91 E-value=0.1 Score=33.68 Aligned_cols=140 Identities=14% Similarity=0.023 Sum_probs=79.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 017743 96 CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (366)
+...|.+++..+++.+...+ .+..-||-++.-....-+-+-..++++.+-+. +. ...+++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FD------------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FD------------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SC------------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-cC------------chhhhcHHHH
Confidence 34456777777777776654 24555565665555555555555555554332 11 1234444444
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
...+-.+ ..+...+...++.+...|.-+...++++.+.+.+ .|++...-.+..+|.+.|...++-+++.+.-+.
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 4443332 1233445555666666677676666666655544 566666666667777777777776666666666
Q ss_pred CC
Q 017743 256 GK 257 (366)
Q Consensus 256 ~~ 257 (366)
|.
T Consensus 150 G~ 151 (161)
T d1wy6a1 150 GE 151 (161)
T ss_dssp TC
T ss_pred hH
Confidence 54
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.73 E-value=0.13 Score=33.29 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 017743 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328 (366)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 328 (366)
+...++..+......|+-++-.++++.+.+.+ +|++...-.+..+|.+.|...++.+++.+..++|+.
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 45667777888889999999999999977754 788899999999999999999999999999999874
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.02 E-value=0.23 Score=32.10 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.+..|.-+|.+.|+++.|.+.++.+++
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333444444444555555554444444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.49 E-value=0.26 Score=30.07 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
+.-++.+-++.+...++.|++......+++|.+.+++..|.++++-.+.+ ..++...|..+++..
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 34456667777777777888888888888888888888888888777643 223345666655544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.04 E-value=0.3 Score=31.59 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=10.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHHh
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
.+.-+|.+.|+++.|.+.++.+++
T Consensus 78 ~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 78 YLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333344444444444444444444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.16 E-value=0.7 Score=28.11 Aligned_cols=48 Identities=15% Similarity=-0.002 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.-++.+-++.+......|++....+.+++|.+.+++..|.++++..+.
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444455555555555666666666666666666666666655543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.67 E-value=8.6 Score=30.98 Aligned_cols=182 Identities=7% Similarity=-0.048 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHH
Q 017743 135 GMIKEMESVLSRMKSNQCKPDIITFN----LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210 (366)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 210 (366)
.+.+.+..++......... +..-+. .+.......+..+.+...+......+. +.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence 4667777777776554222 222121 222233445666677776666655432 333333344445566777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC------------CCC-----------CCHH----H
Q 017743 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL------------GKD-----------MKVS----T 263 (366)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~-----------~~~~----~ 263 (366)
...+..+.... .......--+..++...|+.+.|...|..+... |.+ +... .
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 383 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP 383 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcCh
Confidence 77777664321 222344455667777778888877777765431 111 0000 0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
-..-+..+...|....|...|..+... .+......+.....+.|.++.|+.......
T Consensus 384 ~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 384 EMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 112356677899999999999988764 356677788888999999999998776653
|
| >d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: MIF4G domain-like domain: Programmed cell death 4, PDCD4 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.21 E-value=1.9 Score=27.97 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=37.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHhhhCCCC
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT--EADLLFENSHNMGVT 293 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~ 293 (366)
-...++.-|...++.++|...++++...... ....+..+..+.-+.+.-. .+..++..+...|+-
T Consensus 9 k~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~-~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~i 75 (129)
T d2nsza1 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCchhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCC
Confidence 3566777777888888888888877532211 2233333444443433332 245677777776654
|