Citrus Sinensis ID: 017756

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------

MAICFSSAVKPANHFTVFFNPAPKKPIFKCSCSLPTVTTTEPEPVFTSVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVGSVRAPR

ccccccccccccccccccccccccccEEEEEccccccccccccccccEEEEEEcccccccccHHHHHHHHccccccEEEEEEccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHccEEEEEEEccccEEEEEccccccEEEEEEEccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHHcccEEEEEcccccEEEEEccccccHHHHHHHHHHHHHHHccccEEEEEccccccccEEEccccccc

cEEEEEccccccccccccccccccccEEEEEcccEEEEEEcccccEEEEEEEEEccccccccccHHHHHHHHHcccEEEEEEccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccHHHccEEEEEEEccccEEEEEccccccEEEEEEEcccEEcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHcccEEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEccccccc

maicfssavkpanhftvffnpapkkpifkcscslptvtttepepvftsvktfapatvanlgpcfdflgcavdglgdyvslkvdpsvhpgevsisevigpsklsknplwncaGIAAISAMKMLGVRSVGLSlslekglplgsglgsSAASAAAAAVAVNEMFGNKLLPDELVIAGLEseakvsgyhadniapaIMGGFVLIrsyepldlmrlnfpekkQLLFVLVtpefeaptkkmraalpaevgmphhiwnCSQAGALVAAVLngdpvglgkalssdkivepkraplipgmEAVKKVAVEAGaygctisgagptavavvdneekgkVIGEKMVEAFWKEGNLKAVSMVKRLDRVGArlvgsvrapr

maicfssavkpanhfTVFFNPAPKKPIFKCSCSLPTVTTTEPEPVFTSVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISevigpsklsknpLWNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKalssdkivepkraplipgMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKrldrvgarlvgsvrapr

MAICFSSAVKPANHFTVFFNPAPKKPIFKCSCSLptvtttepepvFTSVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMlgvrsvglslslekglplgsglgssaasaaaaavaVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMeavkkvaveaGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVGSVRAPR

**ICFSSAVKPANHFTVFFNPAPKKPIFKCSCSLPTVTTTEPEPVFTSVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGL****ASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV*******

**********************PKKPIFKCSCS**********PVFTSVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARL*G******

MAICFSSAVKPANHFTVFFNPAPKKPIFKCSCSLPTVTTTEPEPVFTSVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSG**********AAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVGSVRAPR

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		366	2.2.26 [Sep-21-2011]
A4SGN0		320	Homoserine kinase OS=Pros	yes	no	0.844	0.965	0.426	4e-44
A1BJF6		320	Homoserine kinase OS=Chlo	yes	no	0.844	0.965	0.401	3e-40
B3QWX6		319	Homoserine kinase OS=Chlo	yes	no	0.844	0.968	0.403	7e-39
Q8KAW7		324	Homoserine kinase OS=Chlo	yes	no	0.852	0.962	0.388	2e-37
O58814		293	Homoserine kinase OS=Pyro	yes	no	0.778	0.972	0.377	2e-37
B3EL38		320	Homoserine kinase OS=Chlo	yes	no	0.778	0.890	0.412	1e-36
A7MIJ7		309	Homoserine kinase OS=Cron	yes	no	0.822	0.974	0.332	6e-34
A6T4E3		309	Homoserine kinase OS=Kleb	yes	no	0.825	0.977	0.330	4e-33
A9MXH1		309	Homoserine kinase OS=Salm	yes	no	0.825	0.977	0.339	5e-33
A9MR86		309	Homoserine kinase OS=Salm	N/A	no	0.825	0.977	0.336	9e-33

>sp\|A4SGN0\|KHSE_PROVI Homoserine kinase OS=Prosthecochloris vibrioformis (strain DSM 265) GN=thrB PE=3 SV=1	Back alignment and function desciption

 Score =  179 bits (453), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 137/321 (42%), Positives = 179/321 (55%), Gaps = 12/321 (3%)

Query: 48  SVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPG-EVSISEVIGPS-KLSKN 105
           SV+ FA ATV N+   FD LG A+   GD V L      H G  V+IS + G   KL  +
Sbjct: 3   SVRGFASATVGNVACGFDILGFAITEPGDEVILTRSERKHTGCPVTISSISGDGGKLPLD 62

Query: 106 PLWNCAGIAAISAMKML----GVRSVG-LSLSLEKGLPLGSGLGSSAASAAAAAVAVNEM 160
           P  N +    +  ++ +    G    G +SL L+K LPL SG+GSSAASAAAA  A NE+
Sbjct: 63  PRKNTSSFVVLKFLEHIRTHKGQDCTGHISLELKKHLPLSSGMGSSAASAAAALAAANEL 122

Query: 161 FGNKLLPDELVIAGLESEAKVSGY-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQL 219
            G      ELV   +E E    G  HADN APAI+G FVLIRSY PLDL+ +  PEK  L
Sbjct: 123 LGRPCTKMELVHFAIEGERVACGSAHADNAAPAILGNFVLIRSYTPLDLIVIPPPEK--L 180

Query: 220 LFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKI 279
              LV P  E  T   R+ LP ++ +          GALVA +L  D   +G++L  D +
Sbjct: 181 FCSLVHPHTELRTSFARSVLPTDITLKDATRQWGNVGALVAGLLTSDYALVGRSLV-DVV 239

Query: 280 VEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFW-K 338
            EPKRAPLIPG   VK+ A+ AGA GC+I+G+GP+  A  D+ E     GE M +AF   
Sbjct: 240 AEPKRAPLIPGFAEVKEAALNAGALGCSIAGSGPSIFAFSDSAETAHAAGEAMQKAFLAS 299

Query: 339 EGNLKAVSMVKRLDRVGARLV 359
           + +LK+   V  + R GAR++
Sbjct: 300 KKSLKSDMWVSPICREGARIL 320

Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate.
Prosthecochloris vibrioformis (strain DSM 265) (taxid: 290318)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 9

>sp\|A1BJF6\|KHSE_CHLPD Homoserine kinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=thrB PE=3 SV=1	Back alignment and function description

>sp\|B3QWX6\|KHSE_CHLT3 Homoserine kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=thrB PE=3 SV=1	Back alignment and function description

>sp\|Q8KAW7\|KHSE_CHLTE Homoserine kinase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=thrB PE=3 SV=1	Back alignment and function description

>sp\|O58814\|KHSE_PYRHO Homoserine kinase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=thrB PE=3 SV=2	Back alignment and function description

>sp\|B3EL38\|KHSE_CHLPB Homoserine kinase OS=Chlorobium phaeobacteroides (strain BS1) GN=thrB PE=3 SV=1	Back alignment and function description

>sp\|A7MIJ7\|KHSE_CROS8 Homoserine kinase OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=thrB PE=3 SV=1	Back alignment and function description

>sp\|A6T4E3\|KHSE_KLEP7 Homoserine kinase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=thrB PE=3 SV=1	Back alignment and function description

>sp\|A9MXH1\|KHSE_SALPB Homoserine kinase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=thrB PE=3 SV=1	Back alignment and function description

>sp\|A9MR86\|KHSE_SALAR Homoserine kinase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=thrB PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		366
224131898		366	predicted protein [Populus trichocarpa]	0.994	0.994	0.796	1e-150
255553311		367	homoserine kinase, putative [Ricinus com	0.972	0.970	0.781	1e-150
449454297		373	PREDICTED: homoserine kinase-like [Cucum	0.939	0.922	0.779	1e-143
4927412		370	homoserine kinase [Arabidopsis thaliana]	0.986	0.975	0.759	1e-137
15227800		370	homoserine kinase [Arabidopsis thaliana]	0.986	0.975	0.756	1e-137
225445840		368	PREDICTED: homoserine kinase-like [Vitis	0.969	0.964	0.725	1e-136
147773819		368	hypothetical protein VITISV_035502 [Viti	0.969	0.964	0.725	1e-136
39104572		370	putative homoserine kinase HSK [Arabidop	0.986	0.975	0.756	1e-136
297832328		370	homoserine kinase [Arabidopsis lyrata su	0.986	0.975	0.751	1e-136
357495661		378	Homoserine kinase [Medicago truncatula]	0.920	0.891	0.741	1e-132

>gi\|224131898\|ref\|XP_002328135.1\| predicted protein [Populus trichocarpa] gi\|222837650\|gb\|EEE76015.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 293/368 (79%), Positives = 326/368 (88%), Gaps = 4/368 (1%)

Query: 1   MAICFSSAVKPANHFT-VFFNPAPKKP-IFKCSCSLPTVTTTEPEPVFTSVKTFAPATVA 58
           MAICF S +KP    T +  N  PKKP I +C+ SLP +TTTEPEPVFTSV++FAPATVA
Sbjct: 1   MAICFLSPLKPITPTTSLTTNLNPKKPNILRCNFSLPIITTTEPEPVFTSVRSFAPATVA 60

Query: 59  NLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISA 118
           NLGP FDFLGCAVDGLGD+VSL+VDPSVHPGE+SIS++ G   LSKNPL NCAGIAAI+ 
Sbjct: 61  NLGPGFDFLGCAVDGLGDFVSLRVDPSVHPGELSISDISGTKNLSKNPLNNCAGIAAIAT 120

Query: 119 MKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESE 178
           MKML +RSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFG KL   +LV+AGLESE
Sbjct: 121 MKMLNIRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGRKLEVKDLVLAGLESE 180

Query: 179 AKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAA 238
           AKVSGYHADNIAPAIMGGFVLIRSY+PL+LM L FP +K L+FVLV+P+FEAPTKKMRAA
Sbjct: 181 AKVSGYHADNIAPAIMGGFVLIRSYDPLELMSLQFPVEKDLIFVLVSPDFEAPTKKMRAA 240

Query: 239 LPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVA 298
           LPAE+GM HH+WNCSQAGALVA+VL GD VGLGKALSSDKIVEPKRAPLIPGM  VKK A
Sbjct: 241 LPAEIGMSHHVWNCSQAGALVASVLQGDLVGLGKALSSDKIVEPKRAPLIPGMVGVKKAA 300

Query: 299 VEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARL 358
           +EAGA+GCTISGAGPTAVAVV +E++G  +GE+MVEAFWKEGNLKAV+MVKRLDRVGARL
Sbjct: 301 LEAGAFGCTISGAGPTAVAVVGSEDRGMEVGERMVEAFWKEGNLKAVAMVKRLDRVGARL 360

Query: 359 VGSVRAPR 366
           VGSV  PR
Sbjct: 361 VGSV--PR 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255553311\|ref\|XP_002517698.1\| homoserine kinase, putative [Ricinus communis] gi\|223543330\|gb\|EEF44862.1\| homoserine kinase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449454297\|ref\|XP_004144892.1\| PREDICTED: homoserine kinase-like [Cucumis sativus] gi\|449471990\|ref\|XP_004153462.1\| PREDICTED: homoserine kinase-like [Cucumis sativus] gi\|449522566\|ref\|XP_004168297.1\| PREDICTED: homoserine kinase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|4927412\|gb\|AAD33097.1\|AF082525_1 homoserine kinase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|15227800\|ref\|NP_179318.1\| homoserine kinase [Arabidopsis thaliana] gi\|22135868\|gb\|AAM91516.1\| 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 [Arabidopsis thaliana] gi\|24899693\|gb\|AAN65061.1\| 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 [Arabidopsis thaliana] gi\|330251511\|gb\|AEC06605.1\| homoserine kinase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|225445840\|ref\|XP_002277887.1\| PREDICTED: homoserine kinase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147773819\|emb\|CAN67551.1\| hypothetical protein VITISV_035502 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|39104572\|dbj\|BAC42512.2\| putative homoserine kinase HSK [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297832328\|ref\|XP_002884046.1\| homoserine kinase [Arabidopsis lyrata subsp. lyrata] gi\|297329886\|gb\|EFH60305.1\| homoserine kinase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357495661\|ref\|XP_003618119.1\| Homoserine kinase [Medicago truncatula] gi\|355519454\|gb\|AET01078.1\| Homoserine kinase [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		366
TAIR\|locus:2827533		370	HSK "homoserine kinase" [Arabi	0.986	0.975	0.631	2.8e-114
TIGR_CMR\|CHY_1910		304	CHY_1910 "homoserine kinase" [	0.773	0.930	0.281	3.9e-21
UNIPROTKB\|P00547		310	thrB "ThrB" [Escherichia coli	0.540	0.638	0.299	9.5e-20
UNIPROTKB\|Q9KPK4		318	thrB "Homoserine kinase" [Vibr	0.535	0.616	0.285	2e-16
TIGR_CMR\|VC_2363		318	VC_2363 "homoserine kinase" [V	0.535	0.616	0.285	2e-16
TIGR_CMR\|SO_3414		312	SO_3414 "homoserine kinase" [S	0.827	0.971	0.275	2.3e-15
TIGR_CMR\|CPS_4290		328	CPS_4290 "homoserine kinase" [	0.480	0.536	0.296	6.2e-14
POMBASE\|SPBC4C3.03		338	SPBC4C3.03 "homoserine kinase	0.336	0.363	0.315	2.2e-12
TAIR\|locus:504955502		111	AT4G35295 "AT4G35295" [Arabido	0.153	0.504	0.590	2.3e-11
CGD\|CAL0003628		357	THR1 [Candida albicans (taxid:	0.327	0.336	0.307	6e-11

TAIR\|locus:2827533 HSK "homoserine kinase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1127 (401.8 bits), Expect = 2.8e-114, P = 2.8e-114
 Identities = 231/366 (63%), Positives = 261/366 (71%)

Query:     2 AICFSSAVKPANHFTVFFNPAP----KKPIFKCSCSLXXXXXXXXXXXFTSVKTFAPATV 57
             ++CF S  KP ++F    NP+P    K  +F+C  S+           F SVKTFAPATV
Sbjct:     3 SLCFQSPSKPISYFQPKSNPSPPLFAKVSVFRCRASVQTLVAVEPEPVFVSVKTFAPATV 62

Query:    58 ANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPS-KLSKNPLWNCAGIAAI 116
             ANLGP FDFLGCAVDGLGD+V+L+VDPSV  GEVSISE+ G + KLS NPL NCAGIAAI
Sbjct:    63 ANLGPGFDFLGCAVDGLGDHVTLRVDPSVRAGEVSISEITGTTTKLSTNPLRNCAGIAAI 122

Query:   117 SAMKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNEMFGNKLLPDELVIAGLE 176
             + MKM                                   VNE+FG KL  D+LV+AGLE
Sbjct:   123 ATMKMLGIRSVGLSLDLHKGLPLGSGLGSSAASAAAAAVAVNEIFGRKLGSDQLVLAGLE 182

Query:   177 SEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMR 236
             SEAKVSGYHADNIAPAIMGGFVLIR+YEPLDL  L FP  K L FVLV+P+FEAPTKKMR
Sbjct:   183 SEAKVSGYHADNIAPAIMGGFVLIRNYEPLDLKPLRFPSDKDLFFVLVSPDFEAPTKKMR 242

Query:   237 AALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXX 296
             AALP E+ M HH+WN SQA ALVAAVL GD V LGKALSSDKIVEP RAPLIPGM     
Sbjct:   243 AALPTEIPMVHHVWNSSQAAALVAAVLEGDAVMLGKALSSDKIVEPTRAPLIPGMEAVKK 302

Query:   297 XXXXXGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGA 356
                  GA+GCTISGAGPTAVAV+D+EEKG+VIGEKMVEAFWK G+LK+V+ VK+LD VGA
Sbjct:   303 AALEAGAFGCTISGAGPTAVAVIDSEEKGQVIGEKMVEAFWKVGHLKSVASVKKLDNVGA 362

Query:   357 RLVGSV 362
             RLV SV
Sbjct:   363 RLVNSV 368

GO:0004413 "homoserine kinase activity" evidence=IEA;ISS;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=RCA;TAS

GO:0009088 "threonine biosynthetic process" evidence=TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009617 "response to bacterium" evidence=IGI

GO:0009620 "response to fungus" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TIGR_CMR\|CHY_1910 CHY_1910 "homoserine kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

UNIPROTKB\|P00547 thrB "ThrB" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KPK4 thrB "Homoserine kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2363 VC_2363 "homoserine kinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_3414 SO_3414 "homoserine kinase" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_4290 CPS_4290 "homoserine kinase" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

POMBASE\|SPBC4C3.03 SPBC4C3.03 "homoserine kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

TAIR\|locus:504955502 AT4G35295 "AT4G35295" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

CGD\|CAL0003628 THR1 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7M9R6	KHSE_ECO45	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
B8D797	KHSE_BUCAT	2, ., 7, ., 1, ., 3, 9	0.3176	0.8251	0.9773	yes	no
P65226	KHSE_SALTY	2, ., 7, ., 1, ., 3, 9	0.3364	0.8251	0.9773	yes	no
B4TVY5	KHSE_SALSV	2, ., 7, ., 1, ., 3, 9	0.3364	0.8251	0.9773	yes	no
B4T6C6	KHSE_SALNS	2, ., 7, ., 1, ., 3, 9	0.3364	0.8251	0.9773	yes	no
B7UI48	KHSE_ECO27	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
Q57TQ2	KHSE_SALCH	2, ., 7, ., 1, ., 3, 9	0.3364	0.8251	0.9773	yes	no
A4SGN0	KHSE_PROVI	2, ., 7, ., 1, ., 3, 9	0.4267	0.8442	0.9656	yes	no
B7L4C8	KHSE_ECO55	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
Q1RGK1	KHSE_ECOUT	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
B7N2U2	KHSE_ECO81	2, ., 7, ., 1, ., 3, 9	0.3301	0.8196	0.9677	yes	no
C5B7K5	KHSE_EDWI9	2, ., 7, ., 1, ., 3, 9	0.3271	0.8087	0.9579	yes	no
A1BJF6	KHSE_CHLPD	2, ., 7, ., 1, ., 3, 9	0.4018	0.8442	0.9656	yes	no
C4ZPT0	KHSE_ECOBW	2, ., 7, ., 1, ., 3, 9	0.3249	0.8224	0.9709	yes	no
B8D8Z2	KHSE_BUCA5	2, ., 7, ., 1, ., 3, 9	0.3176	0.8251	0.9773	yes	no
A6T4E3	KHSE_KLEP7	2, ., 7, ., 1, ., 3, 9	0.3301	0.8251	0.9773	yes	no
B7NHA6	KHSE_ECO7I	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
A9MXH1	KHSE_SALPB	2, ., 7, ., 1, ., 3, 9	0.3396	0.8251	0.9773	yes	no
B1IRH0	KHSE_ECOLC	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
Q8KAW7	KHSE_CHLTE	2, ., 7, ., 1, ., 3, 9	0.3888	0.8524	0.9629	yes	no
B5REZ9	KHSE_SALG2	2, ., 7, ., 1, ., 3, 9	0.3364	0.8251	0.9773	yes	no
Q326L9	KHSE_SHIBS	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
Q3Z611	KHSE_SHISS	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
O66132	KHSE_BUCAI	2, ., 7, ., 1, ., 3, 9	0.3207	0.8251	0.9773	yes	no
B7M0A0	KHSE_ECO8A	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
Q32KB5	KHSE_SHIDS	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
B5BLG9	KHSE_SALPK	2, ., 7, ., 1, ., 3, 9	0.3364	0.8251	0.9773	yes	no
B7LWR1	KHSE_ESCF3	2, ., 7, ., 1, ., 3, 9	0.3280	0.8224	0.9741	yes	no
C0Q4E3	KHSE_SALPC	2, ., 7, ., 1, ., 3, 9	0.3364	0.8251	0.9773	yes	no
A1A756	KHSE_ECOK1	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
B5Y254	KHSE_KLEP3	2, ., 7, ., 1, ., 3, 9	0.3270	0.8251	0.9773	yes	no
A7MIJ7	KHSE_CROS8	2, ., 7, ., 1, ., 3, 9	0.3322	0.8224	0.9741	yes	no
A7ZVW2	KHSE_ECOHS	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
B2U219	KHSE_SHIB3	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
B5FH97	KHSE_SALDC	2, ., 7, ., 1, ., 3, 9	0.3364	0.8251	0.9773	yes	no
B2VH20	KHSE_ERWT9	2, ., 7, ., 1, ., 3, 9	0.3448	0.8224	0.9741	yes	no
A7ZH92	KHSE_ECO24	2, ., 7, ., 1, ., 3, 9	0.3217	0.8224	0.9709	yes	no
B1XBC8	KHSE_ECODH	2, ., 7, ., 1, ., 3, 9	0.3249	0.8224	0.9709	yes	no
B5R5H5	KHSE_SALEP	2, ., 7, ., 1, ., 3, 9	0.3364	0.8251	0.9773	yes	no
B5F6C2	KHSE_SALA4	2, ., 7, ., 1, ., 3, 9	0.3364	0.8251	0.9773	yes	no
A8ALV4	KHSE_CITK8	2, ., 7, ., 1, ., 3, 9	0.3301	0.8251	0.9773	yes	no
B4TIA4	KHSE_SALHS	2, ., 7, ., 1, ., 3, 9	0.3364	0.8251	0.9773	yes	no
Q5PDM3	KHSE_SALPA	2, ., 7, ., 1, ., 3, 9	0.3364	0.8251	0.9773	yes	no
A1JJC7	KHSE_YERE8	2, ., 7, ., 1, ., 3, 9	0.3406	0.8196	0.9708	yes	no
B3QWX6	KHSE_CHLT3	2, ., 7, ., 1, ., 3, 9	0.4031	0.8442	0.9686	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1.39	0.824
3rd Layer	2.7.1	0.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_scaffold_66000196	homoserine kinase (EC-2.7.1.39) (366 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.97.110.1	threonine synthase (EC-4.2.3.1) (462 aa)	•			•	•	0.992
	gw1.44.139.1	threonine synthase (EC-4.2.3.1) (461 aa)	•			•	•	0.991
	fgenesh4_pg.C_LG_XIX000654	hypothetical protein (829 aa)	•	•	•	•	•	0.987
	gw1.41.659.1	hypothetical protein (843 aa)	•	•	•	•	•	0.986
	gw1.13401.3.1	Predicted protein (303 aa)	•		•	•	•	0.979
	estExt_fgenesh4_pm.C_LG_XVII0132	SubName- Full=Putative uncharacterized protein; (532 aa)	•			•	•	0.886
	grail3.17125000101	annotation not avaliable (190 aa)	•			•		0.812
	HMT2	homocysteine s-methyltransferase (EC-2.1.1.10) (338 aa)				•		0.800
	MS1	SubName- Full=Putative uncharacterized protein; (766 aa)				•		0.800
	HMT3	homocysteine s-methyltransferase (EC-2.1.1.10) (327 aa)				•		0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		366
PLN02451		370	PLN02451, PLN02451, homoserine kinase	0.0
PRK01212		301	PRK01212, PRK01212, homoserine kinase; Provisional	3e-86
COG0083		299	COG0083, ThrB, Homoserine kinase [Amino acid trans	2e-78
TIGR00191		302	TIGR00191, thrB, homoserine kinase	2e-58
PTZ00299		336	PTZ00299, PTZ00299, homoserine kinase; Provisional	9e-20
pfam00288		67	pfam00288, GHMP_kinases_N, GHMP kinases N terminal	4e-15
COG1577		307	COG1577, ERG12, Mevalonate kinase [Lipid metabolis	3e-14
TIGR01920		261	TIGR01920, Shik_kin_archae, shikimate kinase	4e-12
COG1947		289	COG1947, IspE, 4-diphosphocytidyl-2C-methyl-D-eryt	2e-10
TIGR00549		274	TIGR00549, mevalon_kin, mevalonate kinase	4e-10
PRK03926		302	PRK03926, PRK03926, mevalonate kinase; Provisional	1e-09
COG1685		278	COG1685, COG1685, Archaeal shikimate kinase [Amino	3e-09
PRK00128		286	PRK00128, ipk, 4-diphosphocytidyl-2-C-methyl-D-ery	3e-09
PRK03188		300	PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-	5e-08
TIGR00154		294	TIGR00154, ispE, 4-diphosphocytidyl-2C-methyl-D-er	1e-07
PRK14614		280	PRK14614, PRK14614, 4-diphosphocytidyl-2-C-methyl-	1e-06
COG1907		312	COG1907, COG1907, Predicted archaeal sugar kinases	3e-06
PRK03817		351	PRK03817, PRK03817, galactokinase; Provisional	6e-06
pfam08544		86	pfam08544, GHMP_kinases_C, GHMP kinases C terminal	4e-05
PRK04181		257	PRK04181, PRK04181, 4-diphosphocytidyl-2-C-methyl-	9e-05
COG4542		293	COG4542, PduX, Protein involved in propanediol uti	1e-04
COG0153		390	COG0153, GalK, Galactokinase [Carbohydrate transpo	1e-04
COG1829		283	COG1829, COG1829, Predicted archaeal kinase (sugar	2e-04
COG3407		329	COG3407, MVD1, Mevalonate pyrophosphate decarboxyl	4e-04
PTZ00298		328	PTZ00298, PTZ00298, mevalonate kinase; Provisional	4e-04
PRK01123		282	PRK01123, PRK01123, shikimate kinase; Provisional	7e-04
PRK02534		312	PRK02534, PRK02534, 4-diphosphocytidyl-2-C-methyl-	0.001
PRK00650		288	PRK00650, PRK00650, 4-diphosphocytidyl-2-C-methyl-	0.003
PRK14611		275	PRK14611, PRK14611, 4-diphosphocytidyl-2-C-methyl-	0.004

>gnl\|CDD\|215248 PLN02451, PLN02451, homoserine kinase	Back alignment and domain information

 Score =  584 bits (1507), Expect = 0.0
 Identities = 265/367 (72%), Positives = 302/367 (82%), Gaps = 5/367 (1%)

Query: 1   MAICFSSAVKPANHF----TVFFNPAPKKPIFKCSCSLPTVTTTEPEPVFTSVKTFAPAT 56
            AICF S  KP +              ++ + +  C++      EPEPVFTSVK FAPAT
Sbjct: 2   AAICFQSPSKPISSSPSTSKTSPPLFARRSVRRVRCNVSLTGKVEPEPVFTSVKAFAPAT 61

Query: 57  VANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPS-KLSKNPLWNCAGIAA 115
           VANLGP FDFLGCAVDGLGD+V+ +VDP V PGEVSISE+ G + +LSK+PL NCAGIAA
Sbjct: 62  VANLGPGFDFLGCAVDGLGDFVTARVDPGVRPGEVSISEITGDTGRLSKDPLRNCAGIAA 121

Query: 116 ISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGL 175
           I+ MK+LG+RSVGLSLSL KGLPLGSGLGSSAASAAAAAVAVNE+FG+ L  D+LV+AGL
Sbjct: 122 IATMKLLGIRSVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGL 181

Query: 176 ESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKM 235
           ESEAKVSGYHADNIAPA+MGGFVLIRSYEPL L+ L FP  K L FVLV+P+FEAPTKKM
Sbjct: 182 ESEAKVSGYHADNIAPALMGGFVLIRSYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTKKM 241

Query: 236 RAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVK 295
           RAALP E+ M HH+WNCSQA ALVAA+L GD V LG+ALSSDKIVEP RAPLIPGMEAVK
Sbjct: 242 RAALPKEIPMKHHVWNCSQAAALVAAILQGDAVLLGEALSSDKIVEPTRAPLIPGMEAVK 301

Query: 296 KVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVG 355
           K A+EAGAYGCTISGAGPTAVAV+D+EEKG+ +GE+MVEAF K GNLKA + VK+LDRVG
Sbjct: 302 KAALEAGAYGCTISGAGPTAVAVIDDEEKGEEVGERMVEAFRKAGNLKATASVKKLDRVG 361

Query: 356 ARLVGSV 362
           ARLV SV
Sbjct: 362 ARLVESV 368

Length = 370

>gnl\|CDD\|234920 PRK01212, PRK01212, homoserine kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|223161 COG0083, ThrB, Homoserine kinase [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|129295 TIGR00191, thrB, homoserine kinase	Back alignment and domain information

>gnl\|CDD\|140320 PTZ00299, PTZ00299, homoserine kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain	Back alignment and domain information

>gnl\|CDD\|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|233637 TIGR01920, Shik_kin_archae, shikimate kinase	Back alignment and domain information

>gnl\|CDD\|224858 COG1947, IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|233017 TIGR00549, mevalon_kin, mevalonate kinase	Back alignment and domain information

>gnl\|CDD\|179677 PRK03926, PRK03926, mevalonate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|224599 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|234652 PRK00128, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|235110 PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|188029 TIGR00154, ispE, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	Back alignment and domain information

>gnl\|CDD\|173078 PRK14614, PRK14614, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|224819 COG1907, COG1907, Predicted archaeal sugar kinases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|235163 PRK03817, PRK03817, galactokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal	Back alignment and domain information

>gnl\|CDD\|235243 PRK04181, PRK04181, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|226917 COG4542, PduX, Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|224742 COG1829, COG1829, Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|225941 COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|234906 PRK01123, PRK01123, shikimate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|235049 PRK02534, PRK02534, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|134340 PRK00650, PRK00650, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|184767 PRK14611, PRK14611, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		366
PLN02451		370	homoserine kinase	100.0
COG0083		299	ThrB Homoserine kinase [Amino acid transport and m	100.0
PTZ00299		336	homoserine kinase; Provisional	100.0
PRK01212		301	homoserine kinase; Provisional	100.0
TIGR00191		302	thrB homoserine kinase. P.aeruginosa homoserine ki	100.0
PRK02534		312	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
COG1947		289	IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p	100.0
PRK03188		300	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
PRK14608		290	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
PRK14615		296	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
PRK14616		287	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
PRK00128		286	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	100.0
PRK14613		297	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
COG0153		390	GalK Galactokinase [Carbohydrate transport and met	100.0
PRK14610		283	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
PTZ00298		328	mevalonate kinase; Provisional	100.0
PRK14612		276	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
PRK14609		269	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
PRK03926		302	mevalonate kinase; Provisional	100.0
TIGR00154		293	ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin	100.0
PRK05101		382	galactokinase; Provisional	100.0
PRK00650		288	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
PRK14614		280	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
PRK00555		363	galactokinase; Provisional	100.0
TIGR00131		386	gal_kin galactokinase. The galactokinases found by	100.0
TIGR00144		324	beta_RFAP_syn beta-RFAP synthase. This protein fam	100.0
PRK14611		275	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
PRK05322		387	galactokinase; Provisional	100.0
PRK05905		258	hypothetical protein; Provisional	100.0
PRK03817		351	galactokinase; Provisional	100.0
PRK00343		271	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	100.0
PLN02521		497	galactokinase	100.0
PRK04181		257	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
COG1577		307	ERG12 Mevalonate kinase [Lipid metabolism]	100.0
TIGR00549		273	mevalon_kin mevalonate kinase. Paracoccus exhibits	100.0
PLN02865		423	galactokinase	100.0
TIGR01220		358	Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ	100.0
PTZ00290		468	galactokinase; Provisional	100.0
PLN02677		387	mevalonate kinase	99.98
COG2605		333	Predicted kinase related to galactokinase and meva	99.97
PRK13412		974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	99.97
PRK01123		282	shikimate kinase; Provisional	99.97
KOG1537		355	consensus Homoserine kinase [Amino acid transport	99.96
KOG1511		397	consensus Mevalonate kinase MVK/ERG12 [Lipid trans	99.95
TIGR01920		261	Shik_kin_archae shikimate kinase. This model repre	99.94
COG1907		312	Predicted archaeal sugar kinases [General function	99.94
TIGR01240		305	mevDPdecarb diphosphomevalonate decarboxylase. Alt	99.91
COG1685		278	Archaeal shikimate kinase [Amino acid transport an	99.89
TIGR01219		454	Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type,	99.84
KOG0631		489	consensus Galactokinase [Carbohydrate transport an	99.74
PLN02407		343	diphosphomevalonate decarboxylase	99.74
COG3407		329	MVD1 Mevalonate pyrophosphate decarboxylase [Lipid	99.71
COG4542		293	PduX Protein involved in propanediol utilization,	99.67
KOG2833		395	consensus Mevalonate pyrophosphate decarboxylase [	99.65
PF00288		67	GHMP_kinases_N: GHMP kinases N terminal domain; In	99.43
PF08544		85	GHMP_kinases_C: GHMP kinases C terminal ; InterPro	99.29
KOG4644		948	consensus L-fucose kinase [Carbohydrate transport	99.19
COG1829		283	Predicted archaeal kinase (sugar kinase superfamil	99.18
COG3890		337	ERG8 Phosphomevalonate kinase [Lipid metabolism]	98.98
KOG4519		459	consensus Phosphomevalonate kinase [Lipid transpor	97.94
PF10509		52	GalKase_gal_bdg: Galactokinase galactose-binding s	97.16
KOG1537		355	consensus Homoserine kinase [Amino acid transport	95.01

>PLN02451 homoserine kinase	Back alignment and domain information

Probab=100.00  E-value=1.3e-57  Score=437.60  Aligned_cols=360  Identities=74%  Similarity=1.137  Sum_probs=305.6

Q ss_pred             CceeccCCCCCCCCCCccCCCCCCCC------eeeeecCCCccccccCCCCcceeEEEeeeeecccccChhccccccccc
Q 017756            1 MAICFSSAVKPANHFTVFFNPAPKKP------IFKCSCSLPTVTTTEPEPVFTSVKTFAPATVANLGPCFDFLGCAVDGL   74 (366)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~aPaki~nlGe~~dv~g~~~~~l   74 (366)
                      |++||+|..||...+.--....|..+      -.||+++++..  .+|+|||+++++++|||++|||++||++|+|+|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~aPA~~ANLGpgfD~lG~a~d~l   79 (370)
T PLN02451          2 AAICFQSPSKPISSSPSTSKTSPPLFARRSVRRVRCNVSLTGK--VEPEPVFTSVKAFAPATVANLGPGFDFLGCAVDGL   79 (370)
T ss_pred             chhhhcCCCCCCCcCCCcCCCCCCccccccceEEEEeeccccc--cCchhhcceEEEEeccchhhcccChhhhhhhhccC
Confidence            68999999999988776665555443      36788888774  67778889999999999999999999999999889


Q ss_pred             CCEEEEEEcCCCCCCcEEEEeecCCC-CCCCCCCccHHHHHHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHH
Q 017756           75 GDYVSLKVDPSVHPGEVSISEVIGPS-KLSKNPLWNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAA  153 (366)
Q Consensus        75 ~~~v~v~~~~~~~~~~i~i~~~~g~~-~~~~~~~~n~i~~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~  153 (366)
                      ||+++++..+....+.+.+.+..|+. .++.++++|++++|++.+++++|....|++|+++|+||.++|||||||+++|+
T Consensus        80 ~d~v~~~~~~~~~~~~~~i~~~~g~~~~l~~~~~~Nlv~~a~~~~~~~~g~~~~gv~I~i~k~IP~g~GLGSSaA~avA~  159 (370)
T PLN02451         80 GDFVTARVDPGVRPGEVSISEITGDTGRLSKDPLRNCAGIAAIATMKLLGIRSVGLSLSLHKGLPLGSGLGSSAASAAAA  159 (370)
T ss_pred             cCEEEEEECCCCCcccEEEEEeccccccCCCCcccCcHHHHHHHHHHHcCCCCCCEEEEEeCCCCCCCCccHHHHHHHHH
Confidence            99999987541001247765433432 46666458999999999999999744699999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchH
Q 017756          154 AVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTK  233 (366)
Q Consensus       154 l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~  233 (366)
                      +.+++++++.+++++||++++.++|.+++|+++||++++++||+++..+.++..+.+++++..++|++++++|++.++|+
T Consensus       160 l~aln~l~g~~ls~~eL~~la~~~E~~v~g~h~Dnva~a~~GG~v~~~~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~sT~  239 (370)
T PLN02451        160 AVAVNELFGSPLGKDDLVLAGLESEAKVSGYHADNIAPALMGGFVLIRSYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTK  239 (370)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHhchhcCCCccchhHhhcCCEEEEEecCCCeEEEeecCCCCCeEEEEEcCCCCccHH
Confidence            99999999999999999999999999999999999998999999998765444556665542257999999999999999


Q ss_pred             HHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccC
Q 017756          234 KMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGP  313 (366)
Q Consensus       234 ~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~  313 (366)
                      ++|+.++....+.+.+.+..++..++.+|.++|++.++++|+||++||+++..++|+++++++.+++.|++|++||||||
T Consensus       240 ~ar~~lp~~~~~~~~v~~~~~~~~l~~al~~~d~~~l~~~m~nD~~~e~~r~~~~P~l~~l~~~~~~~GA~ga~mSGSGp  319 (370)
T PLN02451        240 KMRAALPKEIPMKHHVWNCSQAAALVAAILQGDAVLLGEALSSDKIVEPTRAPLIPGMEAVKKAALEAGAYGCTISGAGP  319 (370)
T ss_pred             HHHHHHhhhcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhHHHHhhhCccHHHHHHHHHHCCCeEEEEEccch
Confidence            99998876655555555555567788999999999999999989999999999999999999999999999999999999


Q ss_pred             ceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEEccc
Q 017756          314 TAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVGSV  362 (366)
Q Consensus       314 ~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~~~~  362 (366)
                      |+|+|++++++++++.+.+++.|.+.++..++++++++|++|+++...+
T Consensus       320 tvfal~~~~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~d~~Ga~v~~~~  368 (370)
T PLN02451        320 TAVAVIDDEEKGEEVGERMVEAFRKAGNLKATASVKKLDRVGARLVESV  368 (370)
T ss_pred             heEEEEcCHHHHHHHHHHHHHHHHHhcCCCceEEEeccCCCCeEEEecC
Confidence            9999998777899999999999877655678999999999999997654

>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]	Back alignment and domain information

>PTZ00299 homoserine kinase; Provisional	Back alignment and domain information

>PRK01212 homoserine kinase; Provisional	Back alignment and domain information

>TIGR00191 thrB homoserine kinase	Back alignment and domain information

>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]	Back alignment and domain information

>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PTZ00298 mevalonate kinase; Provisional	Back alignment and domain information

>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK03926 mevalonate kinase; Provisional	Back alignment and domain information

>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	Back alignment and domain information

>PRK05101 galactokinase; Provisional	Back alignment and domain information

>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK00555 galactokinase; Provisional	Back alignment and domain information

>TIGR00131 gal_kin galactokinase	Back alignment and domain information

>TIGR00144 beta_RFAP_syn beta-RFAP synthase	Back alignment and domain information

>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK05322 galactokinase; Provisional	Back alignment and domain information

>PRK05905 hypothetical protein; Provisional	Back alignment and domain information

>PRK03817 galactokinase; Provisional	Back alignment and domain information

>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PLN02521 galactokinase	Back alignment and domain information

>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]	Back alignment and domain information

>TIGR00549 mevalon_kin mevalonate kinase	Back alignment and domain information

>PLN02865 galactokinase	Back alignment and domain information

>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch	Back alignment and domain information

>PTZ00290 galactokinase; Provisional	Back alignment and domain information

>PLN02677 mevalonate kinase	Back alignment and domain information

>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]	Back alignment and domain information

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional	Back alignment and domain information

>PRK01123 shikimate kinase; Provisional	Back alignment and domain information

>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]	Back alignment and domain information

>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]	Back alignment and domain information

>TIGR01920 Shik_kin_archae shikimate kinase	Back alignment and domain information

>COG1907 Predicted archaeal sugar kinases [General function prediction only]	Back alignment and domain information

>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase	Back alignment and domain information

>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch	Back alignment and domain information

>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN02407 diphosphomevalonate decarboxylase	Back alignment and domain information

>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]	Back alignment and domain information

>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]	Back alignment and domain information

>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2	Back alignment and domain information

>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2	Back alignment and domain information

>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]	Back alignment and domain information

>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]	Back alignment and domain information

>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]	Back alignment and domain information

>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []	Back alignment and domain information

>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		366
1fwk_A		296	Crystal Structure Of Homoserine Kinase Complexed Wi		2e-22
3hul_A		298	Structure Of Putative Homoserine Kinase Thrb From L		3e-10

>pdb|1FWK|A Chain A, Crystal Structure Of Homoserine Kinase Complexed With Adp Length = 296

Back alignment and structure

Iteration: 1

Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 118/271 (43%), Gaps = 10/271 (3%) Query: 48 SVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPL 107 V+ AP T ANLG FD G + D + ++ ++ E+ I + + +P Sbjct: 2 KVRVKAPCTSANLGVGFDVFGLCLKEPYDVIEVE---AIDDKEIIIE--VDDKNIPTDPD 56 Query: 108 WNCAGIAAISAMKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNEMFGNKLLP 167 N AGI A M +NE+F L Sbjct: 57 KNVAGIVA-KKMIDDFNIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDK 115 Query: 168 DELVIAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTP 226 +LV E SG HADN+APAI GGF ++ +YEPL++ L+ P +L ++ P Sbjct: 116 LKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNYEPLEV--LHIPIDFKLDILIAIP 173 Query: 227 EFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAP 286 TK+ R LP VG+ + N +A +V A+ N D G+ + SDK++EP R Sbjct: 174 NISINTKEAREILPKAVGLKDLVNNVGKACGMVYALYNKDKSLFGRYMMSDKVIEPVRGK 233 Query: 287 LIPGMXXXXXXXXXXGAYGCTISGAGPTAVA 317 LIP YG TISG+GP+ +A Sbjct: 234 LIPNYFKIKEEVKDK-VYGITISGSGPSIIA 263

PyMOL of 1fwk

>pdb|3HUL|A Chain A, Structure Of Putative Homoserine Kinase Thrb From Listeria Monocytogenes Length = 298

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		366
1h72_C		296	HK, homoserine kinase; transferase, threonine bios	1e-91
3hul_A		298	HSK, HK, homoserine kinase; structural genomics, p	4e-87
2hfs_A		332	Mevalonate kinase, putative; GHMP kinase, trypanos	2e-19
2x7i_A		308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	1e-16
2oi2_A		292	Mevalonate kinase; enzyme-inhibitor complex, trans	7e-14
3pyf_A		306	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	4e-13
3k85_A		357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	3e-12
1kkh_A		317	Mevalonate kinase; mixed beta sheet, phosphate-bin	7e-11
2cz9_A		350	Probable galactokinase; structural genomics, NPPSF	1e-09
2ww4_A		283	4-diphosphocytidyl-2C-methyl-D-erythritol kinase;	3e-09
1uek_A		275	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	9e-09
2v8p_A		271	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	1e-08
3k17_A		365	LIN0012 protein; protein structure initiative II(P	7e-07
2gs8_A		317	Mevalonate pyrophosphate decarboxylase; streptococ	9e-07
1pie_A		419	Galactokinase; galactose, galactosemia, transferas	3e-06
2pg9_A		337	Phosphomevalonate kinase; GHMP kinase superfamily,	3e-06
1wuu_A		399	Galactokinase; galactosemia, GHMP superfamily, tra	5e-06
3qt5_A		332	Mevalonate diphosphate decarboxylase; GHMP kinase	8e-06
1fi4_A		416	Mevalonate 5-diphosphate decarboxylase; mixed alph	2e-05
2a2c_A		478	N-acetylgalactosamine kinase; galactokinase, , tra	2e-04
3lto_A		323	Mevalonate diphosphate decarboxylase; protein stru	3e-04

>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Length = 296	Back alignment and structure

 Score =  275 bits (706), Expect = 1e-91
 Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 11/291 (3%)

Query: 48  SVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPL 107
            V+  AP T ANLG  FD  G  +    D + ++        E+ I EV     +  +P 
Sbjct: 2   KVRVKAPCTSANLGVGFDVFGLCLKEPYDVIEVEAIDD---KEIII-EVDD-KNIPTDPD 56

Query: 108 WNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLP 167
            N AGI A   +        G+ ++++KG+  GSGLGSSAAS+A  A A+NE+F   L  
Sbjct: 57  KNVAGIVAKKMIDDFN-IGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDK 115

Query: 168 DELVIAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTP 226
            +LV      E   SG  HADN+APAI GGF ++ +YEPL+++ +    K  L  ++  P
Sbjct: 116 LKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNYEPLEVLHIPIDFK--LDILIAIP 173

Query: 227 EFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAP 286
                TK+ R  LP  VG+   + N  +A  +V A+ N D    G+ + SDK++EP R  
Sbjct: 174 NISINTKEAREILPKAVGLKDLVNNVGKACGMVYALYNKDKSLFGRYMMSDKVIEPVRGK 233

Query: 287 LIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFW 337
           LIP    +K+  V+   YG TISG+GP+ +A    EE    +   + + + 
Sbjct: 234 LIPNYFKIKE-EVKDKVYGITISGSGPSIIAFPK-EEFIDEVENILRDYYE 282

PyMOL of 1h72

>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Length = 298	Back alignment and structure

>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332	Back alignment and structure

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308	Back alignment and structure

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292	Back alignment and structure

>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Length = 306	Back alignment and structure

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357	Back alignment and structure

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317	Back alignment and structure

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350	Back alignment and structure

>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Length = 283	Back alignment and structure

>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Length = 275	Back alignment and structure

>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Length = 271	Back alignment and structure

>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365	Back alignment and structure

>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Length = 317	Back alignment and structure

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419	Back alignment and structure

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399	Back alignment and structure

>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 3qt8_A* 2hk2_A 2hk3_A Length = 332	Back alignment and structure

>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Length = 416	Back alignment and structure

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478	Back alignment and structure

>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Length = 323	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		366
3hul_A		298	HSK, HK, homoserine kinase; structural genomics, p	100.0
1h72_C		296	HK, homoserine kinase; transferase, threonine bios	100.0
3pyf_A		306	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
3k85_A		357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	100.0
4hac_A		321	Mevalonate kinase; GHMP, ATP binding, phosphorylat	100.0
2cz9_A		350	Probable galactokinase; structural genomics, NPPSF	100.0
2hfs_A		332	Mevalonate kinase, putative; GHMP kinase, trypanos	100.0
1wuu_A		399	Galactokinase; galactosemia, GHMP superfamily, tra	100.0
1pie_A		419	Galactokinase; galactose, galactosemia, transferas	100.0
2v8p_A		271	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	100.0
2x7i_A		308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	100.0
2pg9_A		337	Phosphomevalonate kinase; GHMP kinase superfamily,	100.0
3qt5_A		332	Mevalonate diphosphate decarboxylase; GHMP kinase	100.0
2a2c_A		478	N-acetylgalactosamine kinase; galactokinase, , tra	100.0
1uek_A		275	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	100.0
1kkh_A		317	Mevalonate kinase; mixed beta sheet, phosphate-bin	100.0
3k17_A		365	LIN0012 protein; protein structure initiative II(P	100.0
1kvk_A		395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	100.0
2oi2_A		292	Mevalonate kinase; enzyme-inhibitor complex, trans	100.0
2ww4_A		283	4-diphosphocytidyl-2C-methyl-D-erythritol kinase;	100.0
3gon_A		335	Phosphomevalonate kinase; GHMP kinase superfamily,	100.0
2gs8_A		317	Mevalonate pyrophosphate decarboxylase; streptococ	99.97
3v2u_C		520	Protein GAL3; rossmann fold, GHMP superfamily, tra	99.97
2hke_A		380	Diphosphomevalonate decarboxylase, putative; meval	99.97
1fi4_A		416	Mevalonate 5-diphosphate decarboxylase; mixed alph	99.97
3lto_A		323	Mevalonate diphosphate decarboxylase; protein stru	99.95
3f0n_A		414	Mevalonate pyrophosphate decarboxylase; cholestero	99.92

>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}	Back alignment and structure

Probab=100.00  E-value=4.2e-46  Score=349.50  Aligned_cols=287  Identities=25%  Similarity=0.335  Sum_probs=229.8

Q ss_pred             eEEEeeeeecccccChhcccccccccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHHHHHHhCCCCcc
Q 017756           49 VKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLGVRSVG  128 (366)
Q Consensus        49 ~~~~aPaki~nlGe~~dv~g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~~~~~~g~~~~g  128 (366)
                      +++++||+.+|||+++|.+|.+++ +||+++++...    +.+++... +...+|.+ ++|+++|+++.+++   . ..|
T Consensus         3 ~~v~vPat~anlG~Gfd~lg~al~-l~d~v~~~~~~----~~~~i~~~-~~~~~p~~-~~nlv~~a~~~~~~---~-~~g   71 (298)
T 3hul_A            3 LRIRVPATTANLGPGFDSCGLALT-LYLTLDIGAEA----DSWYIEHN-IGGGIPHD-ETNVIIETALNLAP---N-LTP   71 (298)
T ss_dssp             EEEEEEEEEESCTTCTTTEEEEEE-EEEEEEEEEEC----SSCEEECC-CCTTCCSS-TTSHHHHHHHHHCT---T-CCC
T ss_pred             EEEEEeeceeccCCCcchhhhhcc-cceEEEEEEcC----CceEEEec-CcccCCCC-CCcHHHHHHHHHhc---c-CCc
Confidence            899999999999999999999997 99999997422    46676532 11246655 57999999887766   2 358


Q ss_pred             eEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCeEEEeecCCCce
Q 017756          129 LSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDL  208 (366)
Q Consensus       129 ~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~~~~~~~~~~~~  208 (366)
                      ++|+++|+||.++|||||||+++|++.|++++++++++.++|+++|.++|.     ++|++++|++||+++..+. ++.+
T Consensus        72 ~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg-----~~ddv~~~~~GG~~~~~g~-ge~~  145 (298)
T 3hul_A           72 HHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEG-----HPDNVAPAVLGNWVVGAKL-DGED  145 (298)
T ss_dssp             EEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHS-----CSTTHHHHHHCSEEEEEEE-TTEE
T ss_pred             eEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC-----CcccCcccccCCEEEEEeC-CCcE
Confidence            999999999999999999999999999999999999999999999999994     6788988899999997765 4555


Q ss_pred             E--EeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC
Q 017756          209 M--RLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAP  286 (366)
Q Consensus       209 ~--~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~~~  286 (366)
                      .  ++++   +++++++++|+++++|+++|+.+++..++.+.+.+..++..++.+|.++|++.++++|+||.+||+++..
T Consensus       146 ~~~~~~~---p~~~~vlv~p~~~~sT~~a~~~l~~~~~~~~~~~~~~~~~~~~~al~~~d~~~l~~~l~nd~~~e~~~~~  222 (298)
T 3hul_A          146 FYVRHLF---PDCALIAFIPKAELLTSESRGVLPDTLPFKEAVQASSIANVMIAAILRNDMTLAGEMMERDLWHEKYRSQ  222 (298)
T ss_dssp             EEEEECC---C-CEEEEEECCCCCC--------CCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHTCCCC-----CT
T ss_pred             EEEEcCC---CCeEEEEEECCCCCCcHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhhhHHHHHHHHh
Confidence            4  6654   3689999999999999999999887655555555555677889999999999999999888778999888


Q ss_pred             CCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEEcc
Q 017756          287 LIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVGS  361 (366)
Q Consensus       287 ~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~~~  361 (366)
                      .+|+++++++.+++.|+++++||||||++|+|++ ++.++++.+.+++    .+ ..++++++++++.|++|+.+
T Consensus       223 ~~p~l~~l~~~~~~~Ga~ga~~SGsGptv~al~~-~~~a~~v~~~l~~----~~-~~~~~~~~~~~~~Ga~v~~~  291 (298)
T 3hul_A          223 LVPHLAQIRDVAKNQGAYAACLSGAGPTVLVFAP-RNLANKLQTSLQT----LE-IDADVLLLDVEGSGAEVFRE  291 (298)
T ss_dssp             TGGGHHHHHHHHHTTTCCEEEECTTSSCEEEEEC-GGGHHHHHHHHHT----TC-CSSEEEEEEBCCCCCEEEEC
T ss_pred             hCchHHHHHHHHHHCCCEEEEEeccchheEEEEC-HHHHHHHHHHHHh----cC-CCcEEEEcccCCCceEEEec
Confidence            8999999999999999999999999999999998 6777777666554    33 35889999999999999865

PyMOL of 3hul

>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*	Back alignment and structure

>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*	Back alignment and structure

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}	Back alignment and structure

>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}	Back alignment and structure

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*	Back alignment and structure

>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*	Back alignment and structure

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7	Back alignment and structure

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7	Back alignment and structure

>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*	Back alignment and structure

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}	Back alignment and structure

>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A	Back alignment and structure

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*	Back alignment and structure

>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5	Back alignment and structure

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A	Back alignment and structure

>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}	Back alignment and structure

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A	Back alignment and structure

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}	Back alignment and structure

>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*	Back alignment and structure

>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A	Back alignment and structure

>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}	Back alignment and structure

>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*	Back alignment and structure

>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}	Back alignment and structure

>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2	Back alignment and structure

>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}	Back alignment and structure

>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		366
d1h72c1		163	d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Met	9e-31
d1h72c2		133	d.58.26.1 (C:168-300) Homoserine kinase {Archaeon	4e-21
d1ueka2		120	d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C	2e-08
d1fi4a1		188	d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarb	9e-05

>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 163	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Homoserine kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  112 bits (282), Expect = 9e-31
 Identities = 59/165 (35%), Positives = 88/165 (53%), Gaps = 7/165 (4%)

Query: 48  SVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPL 107
            V+  AP T ANLG  FD  G  +    D + ++        +  I   +    +  +P 
Sbjct: 2   KVRVKAPCTSANLGVGFDVFGLCLKEPYDVIEVEAID-----DKEIIIEVDDKNIPTDPD 56

Query: 108 WNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLP 167
            N AGI A   +    +   G+ ++++KG+  GSGLGSSAAS+A  A A+NE+F   L  
Sbjct: 57  KNVAGIVAKKMIDDFNIG-KGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDK 115

Query: 168 DELVIAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRL 211
            +LV      E   SG  HADN+APAI GGF ++ +YEPL+++ +
Sbjct: 116 LKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNYEPLEVLHI 160

PyMOL of d1h72c1

>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 133	Back information, alignment and structure

>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Length = 120	Back information, alignment and structure

>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		366
d1h72c1		163	Homoserine kinase {Archaeon Methanococcus jannasch	99.97
d1ueka1		148	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	99.9
d1s4ea1		176	Galactokinase {Archaeon Pyrococcus furiosus [TaxId	99.9
d1piea1		205	Galactokinase {Lactococcus lactis [TaxId: 1358]}	99.89
d1oj4a1		163	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	99.88
d1kkha1		180	Mevalonate kinase {Archaeon Methanococcus jannasch	99.87
d1h72c2		133	Homoserine kinase {Archaeon Methanococcus jannasch	99.85
d1wuua1		215	Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1k47a1		194	Phosphomevalonate kinase (PMK) {Streptococcus pneu	99.78
d1kvka1		225	Mevalonate kinase {Rat (Rattus norvegicus) [TaxId:	99.74
d1ueka2		120	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	99.59
d1s4ea2		171	Galactokinase {Archaeon Pyrococcus furiosus [TaxId	99.53
d1kvka2		169	Mevalonate kinase {Rat (Rattus norvegicus) [TaxId:	99.48
d1piea2		183	Galactokinase {Lactococcus lactis [TaxId: 1358]}	99.42
d1wuua2		176	Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1oj4a2		120	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	99.31
d1kkha2		137	Mevalonate kinase {Archaeon Methanococcus jannasch	99.28
d1k47a2		135	Phosphomevalonate kinase (PMK) {Streptococcus pneu	99.21
d1fi4a1		188	Mevalonate 5-diphosphate decarboxylase {Baker's ye	99.0
d1fi4a2		203	Mevalonate 5-diphosphate decarboxylase {Baker's ye	96.42

>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Homoserine kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=3.1e-30  Score=218.38  Aligned_cols=160  Identities=38%  Similarity=0.554  Sum_probs=139.2

Q ss_pred             eeEEEeeeeecccccChhcccccccccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHHHHHHhCCCCc
Q 017756           48 SVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLGVRSV  127 (366)
Q Consensus        48 ~~~~~aPaki~nlGe~~dv~g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~~~~~~g~~~~  127 (366)
                      ++++++||+++|||+|||++|.+++.+||+++++....   ..+.+.. .+. .++.++++|++.++++.+++.++.+ .
T Consensus         2 ~i~v~~Pas~aNlg~GFD~lg~Al~~~~d~v~v~~~~~---~~i~i~~-~~~-~i~~~~~~n~~~~~~~~~~~~~~~~-~   75 (163)
T d1h72c1           2 KVRVKAPCTSANLGVGFDVFGLCLKEPYDVIEVEAIDD---KEIIIEV-DDK-NIPTDPDKNVAGIVAKKMIDDFNIG-K   75 (163)
T ss_dssp             EEEEEEEEEEECTGGGTTTEEEEEEEEEEEEEEEEESS---SSEEEEE-SCT-TSCCCTTTSHHHHHHHHHHHHTTCC-C
T ss_pred             EEEEEEeccHHhccccHhHhhhhhcCCccEEEEEECCC---CeEEEEe-cCc-ccCCchhhhhHHHHHHHHHHhcCCC-C
Confidence            58999999999999999999999976799999988764   5676653 222 4676767899999999999999885 7


Q ss_pred             ceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccC-CCcchhhHhhhcCeEEEeecCCC
Q 017756          128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPL  206 (366)
Q Consensus       128 g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g-~~~D~~a~~~~GG~~~~~~~~~~  206 (366)
                      +++|+++|+||.++|||||||+++|++.++|+++++++++++|+++|..+|..+.| ++.||+++|++||+++..+.++.
T Consensus        76 ~~~i~i~~~IP~gaGLGsSSA~a~a~l~aln~l~~~~ls~~~l~~~A~~~e~~~~g~~~gddv~~~~~GG~~~~~~~~~~  155 (163)
T d1h72c1          76 GVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNYEPL  155 (163)
T ss_dssp             EEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEEEETTTT
T ss_pred             CEEEEEeeccccccccCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCCchHhHHHhhCCEEEEecCCCC
Confidence            99999999999999999999999999999999999999999999999999998887 47899999999999998887555


Q ss_pred             ceEEeeC
Q 017756          207 DLMRLNF  213 (366)
Q Consensus       207 ~~~~l~~  213 (366)
                      ++.++|+
T Consensus       156 ~~~~~P~  162 (163)
T d1h72c1         156 EVLHIPI  162 (163)
T ss_dssp             EEEEECC
T ss_pred             ceEeCCC
Confidence            5666654

PyMOL of d1h72c1

>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}	Back information, alignment and structure

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}	Back information, alignment and structure

>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure