Citrus Sinensis ID: 017872

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
MTSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLGGYTLKR
cccccEEEEcccccccccccccccccccccccEEEEEEEccccEEEcHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccccccccEEEEEEEccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccEEEEEcccccEEEccccEEEEEEccccccHHHHHHHccccccccEEEcccccccccccHHHHHHHHHHHHccccEEEEEccHHHHHHccEEEEccccccEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccc
ccccEEEEEccEEEcccccccHHHHHHcccccEEEEEccccccEEEcHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHcccccEEEEEEEEEccccccccccccccccccccEEEEEEEccccccccccccccEEEEEEccccccHHccccHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEEEEEEEEEcccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHEHcccEEEEccEEEEcccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHccccccc
mtstrivfsngvvsqasdtpsvSTFLQErrgaytttrthnngsclLFWERHLRRLASSARILynsspnllfksptpsglepirtpssssslSMWESMIKSLVNDSMNEALPIAlkerrdgeELAVTVLVSgdygklsgienmgsddflgvFDVSvhfsgyvpfvfgvegtGARLALVGRGRDVAEAKYSDWVrlrkpleklrppsvtelllsndgdqllegsITNFFVVCRKDNSEAEDKFLQTcnnshsfevqtapisdgvlpGVIRQLVIEVCRskgipirelaSSWSQHELWKEAFITSSLRVLQHVESiqvpktwelqesdcWNDIAWEQKlfeggpgmitKTIQEEIMERaglggytlkr
mtstrivfsngvvsqasdtpsvstFLQERrgaytttrthnngscLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIAlkerrdgeeLAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVgrgrdvaeakysdwvrlrkpleklrppsvTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQtapisdgvlpGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMeraglggytlkr
MTSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPssssslsmwesmiksLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLGGYTLKR
*****************************RGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNS**********************************************IAL*****GEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGL*******
*TSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGL*******
MTSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPT*****************MWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLGGYTLKR
*TSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPT*****PIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLGGYTL**
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MTSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLGGYTLKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
296086080360 unnamed protein product [Vitis vinifera] 0.964 0.977 0.631 1e-129
225449178357 PREDICTED: uncharacterized protein LOC10 0.956 0.977 0.623 1e-125
356574408364 PREDICTED: uncharacterized protein LOC10 0.980 0.983 0.586 1e-120
255565848364 conserved hypothetical protein [Ricinus 0.961 0.964 0.573 1e-117
449451713365 PREDICTED: uncharacterized protein LOC10 0.967 0.967 0.560 1e-103
224109664333 predicted protein [Populus trichocarpa] 0.871 0.954 0.562 1e-101
297820252359 hypothetical protein ARALYDRAFT_324027 [ 0.939 0.955 0.547 1e-95
21553997353 unknown [Arabidopsis thaliana] 0.947 0.980 0.544 1e-91
18410169353 D-aminoacid aminotransferase-like PLP-de 0.931 0.963 0.544 1e-91
449525028294 PREDICTED: uncharacterized LOC101222891, 0.802 0.996 0.559 1e-78
>gi|296086080|emb|CBI31521.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/364 (63%), Positives = 282/364 (77%), Gaps = 12/364 (3%)

Query: 2   TSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARI 61
           TS+R +F+NGV+S+ SDTP VST L+   GAYTT+RTHNN SCLLFWERHL+RLA S RI
Sbjct: 3   TSSRFLFTNGVISRTSDTPPVSTLLEAHSGAYTTSRTHNNTSCLLFWERHLQRLAESTRI 62

Query: 62  LYNSSPNLLFKS--PTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRD 119
           LYNS P  LFKS  P PS L           LS+W+S+I+SLV+DSMN+A+PI L ERR 
Sbjct: 63  LYNSKPGFLFKSNKPMPSLL----------PLSVWDSVIQSLVHDSMNKAIPIVLNERRS 112

Query: 120 GEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGR 179
           G ELA+T LVSG++ KLS  EN+  +    + DV +H   YVP VFGV    A+LA+VG 
Sbjct: 113 GGELAITTLVSGNFEKLSENENVDEERISQILDVYLHVGSYVPPVFGVRENCAKLAVVGP 172

Query: 180 GRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAED 239
           GRDVA AKYSDW+RLRKPLEKLRP  VTELLLSNDGDQ+LEG ITNFFVVCR+D+SE + 
Sbjct: 173 GRDVAMAKYSDWLRLRKPLEKLRPDLVTELLLSNDGDQILEGCITNFFVVCREDSSEVKA 232

Query: 240 KFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAF 299
           K L    ++ SFEVQTAP+SDGVLPG+IRQ+VIEVC S GIP+RE+A SWS+ ELW+EAF
Sbjct: 233 KNLHDYGSTSSFEVQTAPLSDGVLPGIIRQIVIEVCLSMGIPLREVAPSWSKCELWEEAF 292

Query: 300 ITSSLRVLQHVESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLG 359
           IT+SLRV+QHVE+IQ P +WE  ES+ W +++WE+K F+ GPGMIT  IQ+EIME+A L 
Sbjct: 293 ITNSLRVMQHVETIQAPSSWEQLESNNWKEVSWEEKRFKEGPGMITAVIQKEIMEKASLE 352

Query: 360 GYTL 363
           G+ +
Sbjct: 353 GFPM 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225449178|ref|XP_002275527.1| PREDICTED: uncharacterized protein LOC100256538 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574408|ref|XP_003555340.1| PREDICTED: uncharacterized protein LOC100800620 [Glycine max] Back     alignment and taxonomy information
>gi|255565848|ref|XP_002523913.1| conserved hypothetical protein [Ricinus communis] gi|223536843|gb|EEF38482.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449451713|ref|XP_004143606.1| PREDICTED: uncharacterized protein LOC101222891 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224109664|ref|XP_002315271.1| predicted protein [Populus trichocarpa] gi|222864311|gb|EEF01442.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297820252|ref|XP_002878009.1| hypothetical protein ARALYDRAFT_324027 [Arabidopsis lyrata subsp. lyrata] gi|297323847|gb|EFH54268.1| hypothetical protein ARALYDRAFT_324027 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21553997|gb|AAM63078.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18410169|ref|NP_567011.1| D-aminoacid aminotransferase-like PLP-dependent enzyme-like protein [Arabidopsis thaliana] gi|17381054|gb|AAL36339.1| unknown protein [Arabidopsis thaliana] gi|21280921|gb|AAM45074.1| unknown protein [Arabidopsis thaliana] gi|332645799|gb|AEE79320.1| D-aminoacid aminotransferase-like PLP-dependent enzyme-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449525028|ref|XP_004169523.1| PREDICTED: uncharacterized LOC101222891, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
TAIR|locus:2082722353 AT3G54970 [Arabidopsis thalian 0.945 0.977 0.540 4.3e-86
TIGR_CMR|CBU_0418281 CBU_0418 "4-amino-4-deoxychori 0.164 0.213 0.375 8e-05
TAIR|locus:2082722 AT3G54970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 200/370 (54%), Positives = 247/370 (66%)

Query:     1 MTSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSAR 60
             M++ R ++ NGVV +A   P V+TFL+   GAYTTTRT NNG+  LFWERH++RL+SS R
Sbjct:     1 MSNCRFLYHNGVVLEA---PPVTTFLESHTGAYTTTRTINNGTSFLFWERHMKRLSSSIR 57

Query:    61 ILYNSSPNLLFKSPTPSGLEPIRTPXXXXXXXXXXXXXXXLVNDSMNEALP-IALKE--R 117
             IL  S+P LLF S +        +P                VN SM+EAL  + +KE  R
Sbjct:    58 ILLKSNPELLFSSGS--------SPRFWMNQPVPGSSIYDRVNGSMSEALKSVVVKESER 109

Query:   118 RDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPF-VFGVEGTGARLAL 176
               GEELAVTVLV+G+  KL+ ++   + DFL   DV +H   Y P    GV    A LAL
Sbjct:   110 LYGEELAVTVLVTGNVEKLNRLDVGNNWDFL---DVWLHIGAYSPLGPLGVGENAASLAL 166

Query:   177 VGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSE 236
             VGRGRDVA AKYSDWVRLRKPLEK RPP  TELLLSNDGD LLEG ITNFFVVCR+  S 
Sbjct:   167 VGRGRDVAAAKYSDWVRLRKPLEKFRPPLTTELLLSNDGDHLLEGCITNFFVVCRRVKS- 225

Query:   237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK 296
             +E+ +  + +    FEVQTAPI+DGVL GVIR LVIEVC S+GIP RE A SWS+ ELW+
Sbjct:   226 SENLYGGSLSE---FEVQTAPITDGVLAGVIRDLVIEVCLSEGIPYRERAPSWSERELWE 282

Query:   297 EAFITSSLRVLQHVESIQVPKTWELQESDCWN--DIAWEQKLFEGGPGMITKTIQEEIME 354
             EAFITSSLR+LQHV +I+VP    ++   C    +I W++K F+  PGMIT+ I++ IME
Sbjct:   283 EAFITSSLRILQHVGTIKVP-VGSMEGLACNKPEEIQWKEKRFKERPGMITELIKKAIME 341

Query:   355 RAGLGGYTLK 364
             R    G+ LK
Sbjct:   342 RGIKEGFPLK 351
GO:0003824 "catalytic activity" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
TIGR_CMR|CBU_0418 CBU_0418 "4-amino-4-deoxychorismate lyase, putative" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
cd00449256 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependen 1e-33
pfam01063231 pfam01063, Aminotran_4, Aminotransferase class IV 4e-15
COG0115284 COG0115, IlvE, Branched-chain amino acid aminotran 1e-11
cd01559249 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychor 9e-11
cd01558270 cd01558, D-AAT_like, D-Alanine aminotransferase (D 1e-09
cd01557279 cd01557, BCAT_beta_family, BCAT_beta_family: Branc 6e-07
PRK06680286 PRK06680, PRK06680, D-amino acid aminotransferase; 8e-06
PRK07546209 PRK07546, PRK07546, hypothetical protein; Provisio 1e-04
PRK08320288 PRK08320, PRK08320, branched-chain amino acid amin 2e-04
PRK06606306 PRK06606, PRK06606, branched-chain amino acid amin 2e-04
PRK12479299 PRK12479, PRK12479, branched-chain amino acid amin 9e-04
PLN03117355 PLN03117, PLN03117, Branched-chain-amino-acid amin 0.002
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information 
 Score =  125 bits (315), Expect = 1e-33
 Identities = 63/327 (19%), Positives = 103/327 (31%), Gaps = 84/327 (25%)

Query: 31  GAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSS 90
           G +   R       L   + HL RL  SA+ L           P                
Sbjct: 9   GVFEGLRAGK--GRLFRLDEHLDRLNRSAKRL-------GLPIPYD-------------- 45

Query: 91  LSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGV 150
               E + ++L            L    +G  L +  L++   G L G+    S +    
Sbjct: 46  ---REELREAL----------KELVAANNGASLYIRPLLTRGVGGL-GVAPPPSPEPT-F 90

Query: 151 FDVSVHFSGYVPFVFGVEGTGARLALVGRGR-----DVAEAKYSDWVRLRKPLEKLRPPS 205
              +     Y          G RL      R        +AK    +      ++     
Sbjct: 91  VVFASPVGAY----AKGGEKGVRLITSPDRRRAAPGGTGDAKTGGNLNSVLAKQEAAEAG 146

Query: 206 VTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPG 265
             E LL +D   + EGS +N F+V                      E+ T P+  G+LPG
Sbjct: 147 ADEALLLDDNGYVTEGSASNVFIVKD-------------------GELVTPPLDGGILPG 187

Query: 266 VIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESD 325
           + R  VIE+ +  GI + E   S  +     E F+T +   +  V  I            
Sbjct: 188 ITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEID----------- 236

Query: 326 CWNDIAWEQKLFEGGPGMITKTIQEEI 352
                   + + +G PG +T+ ++E +
Sbjct: 237 -------GRGIGDGKPGPVTRKLRELL 256

This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity. Length = 256
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV Back     alignment and domain information
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 365
PRK12479299 branched-chain amino acid aminotransferase; Provis 100.0
PRK08320288 branched-chain amino acid aminotransferase; Review 100.0
PRK06680286 D-amino acid aminotransferase; Reviewed 100.0
PRK12400290 D-amino acid aminotransferase; Reviewed 100.0
PRK06606306 branched-chain amino acid aminotransferase; Valida 100.0
TIGR01122298 ilvE_I branched-chain amino acid aminotransferase, 100.0
TIGR01121276 D_amino_aminoT D-amino acid aminotransferase. Spec 100.0
PRK07650283 4-amino-4-deoxychorismate lyase; Provisional 100.0
PRK13356286 aminotransferase; Provisional 100.0
cd01558270 D-AAT_like D-Alanine aminotransferase (D-AAT_like) 100.0
PLN02845336 Branched-chain-amino-acid aminotransferase-like pr 100.0
PRK07544292 branched-chain amino acid aminotransferase; Valida 100.0
PRK07849292 4-amino-4-deoxychorismate lyase; Provisional 100.0
PRK06092268 4-amino-4-deoxychorismate lyase; Reviewed 100.0
PRK09266266 hypothetical protein; Provisional 100.0
cd00449256 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes 100.0
TIGR03461261 pabC_Proteo aminodeoxychorismate lyase. Members of 100.0
PRK13357356 branched-chain amino acid aminotransferase; Provis 100.0
cd01557279 BCAT_beta_family BCAT_beta_family: Branched-chain 100.0
TIGR01123313 ilvE_II branched-chain amino acid aminotransferase 100.0
PLN03117355 Branched-chain-amino-acid aminotransferase; Provis 100.0
PLN02782403 Branched-chain amino acid aminotransferase 100.0
cd01559249 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lya 100.0
COG0115284 IlvE Branched-chain amino acid aminotransferase/4- 100.0
PLN02259388 branched-chain-amino-acid aminotransferase 2 100.0
PLN02883384 Branched-chain amino acid aminotransferase 100.0
PF01063231 Aminotran_4: Aminotransferase class IV; InterPro: 100.0
PRK07546209 hypothetical protein; Provisional 100.0
KOG0975379 consensus Branched chain aminotransferase BCAT1, p 100.0
PRK07101187 hypothetical protein; Provisional 99.97
>PRK12479 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-52  Score=407.45  Aligned_cols=278  Identities=22%  Similarity=0.310  Sum_probs=227.7

Q ss_pred             eEEEECCeeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017872            5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP   81 (365)
Q Consensus         5 ~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~   81 (365)
                      .++|+||+++ +.+++.++++||+   |||+|||||+++|  ++++|++|++||.+||+.|+|+.|              
T Consensus         4 ~~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~i~~p--------------   66 (299)
T PRK12479          4 QYIYMNGEFV-EKEKAVVSVYDHGFLYGDGVFEGIRSYGG--NVFCLKEHVKRLYESAKSILLTIP--------------   66 (299)
T ss_pred             cEEEECCEEe-EHHHCccccccchhheeeeEEEEEEEECC--EecCHHHHHHHHHHHHHHhCCCCC--------------
Confidence            5899999999 8888999999985   9999999999999  999999999999999999999765              


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCCC-CCcceeEEEEeecC
Q 017872           82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDD-FLGVFDVSVHFSGY  160 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~~-~~~~~~~~v~~~~~  160 (365)
                             ++.    +++++.+.+.+         +.++..+++||++|++|.+.      +|..+ ....+++++.+.|+
T Consensus        67 -------~~~----~~l~~~i~~~i---------~~~~~~~~~ir~~v~rg~g~------~g~~~~~~~~~~~~i~~~~~  120 (299)
T PRK12479         67 -------LTV----DEMEEAVLQTL---------QKNEYADAYIRLIVSRGKGD------LGLDPRSCVKPSVIIIAEQL  120 (299)
T ss_pred             -------CCH----HHHHHHHHHHH---------HHcCCCCeEEEEEEEecCCC------CCCCCccCCCceEEEEEEEc
Confidence                   122    33444443221         23455678999999998643      12222 23457888888888


Q ss_pred             CCccccccCCCcEEEEecccccC-----CcccccchhhcHHHHHHhCCCCCcEEEE-eCCCCeEEecCcceEEEEEcCCC
Q 017872          161 VPFVFGVEGTGARLALVGRGRDV-----AEAKYSDWVRLRKPLEKLRPPSVTELLL-SNDGDQLLEGSITNFFVVCRKDN  234 (365)
Q Consensus       161 ~~~~~~~~~~Gv~l~~~~~~r~~-----~~~K~~~~~~~~~~l~~a~~~g~de~lL-~~~gg~v~Egs~sN~F~v~~~~~  234 (365)
                      ++.+..++.+|+++.++...|..     +.+|+.||........+|+++|+||+|+ +.+| +|+|++++|+|+|++++ 
T Consensus       121 ~~~~~~~~~~gv~~~~~~~~r~~~~~~~~~~K~~nyl~~vla~~ea~~~g~de~l~ld~~g-~v~E~s~sNlf~v~~~~-  198 (299)
T PRK12479        121 KLFPQEFYDNGLSVVSVASRRNTPDALDPRIKSMNYLNNVLVKIEAAQAGVLEALMLNQQG-YVCEGSGDNVFVVKDGK-  198 (299)
T ss_pred             ccCChhHHhCCeEEEEEeEeccCCCccCccchhhhhHHHHHHHHHHHHcCCCEEEEEcCCC-cEEECCceEEEEEECCE-
Confidence            65544556789999888877753     3578888755444445688899999975 4577 99999999999999987 


Q ss_pred             CcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEc
Q 017872          235 SEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQ  314 (365)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~  314 (365)
                                        |+|||+++|+||||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+||
T Consensus       199 ------------------l~TP~l~~giL~GItR~~il~~~~~~g~~v~e~~i~~~~L~~adevfltnS~~gi~PV~~id  260 (299)
T PRK12479        199 ------------------VLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIPVVKVD  260 (299)
T ss_pred             ------------------EEeCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCeeeeecCcccEEEEEEEC
Confidence                              99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhccCccC
Q 017872          315 VPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLGGYTL  363 (365)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~~~~~  363 (365)
                      +                  ..++++.+||+|++|+++|.+.....+..+
T Consensus       261 ~------------------~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~  291 (299)
T PRK12479        261 S------------------REIGDGKPGSVTKQLTEEFKKLTRERGVRV  291 (299)
T ss_pred             C------------------EEcCCCCcCHHHHHHHHHHHHHHhhcCCCc
Confidence            7                  245567889999999999998877765443

>PRK08320 branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK06680 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK12400 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK06606 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase Back     alignment and domain information
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>PRK13356 aminotransferase; Provisional Back     alignment and domain information
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein Back     alignment and domain information
>PRK07544 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>PRK09266 hypothetical protein; Provisional Back     alignment and domain information
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase Back     alignment and domain information
>PRK13357 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional Back     alignment and domain information
>PLN02782 Branched-chain amino acid aminotransferase Back     alignment and domain information
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PLN02259 branched-chain-amino-acid aminotransferase 2 Back     alignment and domain information
>PLN02883 Branched-chain amino acid aminotransferase Back     alignment and domain information
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue Back     alignment and domain information
>PRK07546 hypothetical protein; Provisional Back     alignment and domain information
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07101 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 6e-15
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 1e-13
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 7e-04
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 1e-13
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 5e-13
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 3e-11
3qqm_A221 MLR3007 protein; structural genomics, joint center 3e-10
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 7e-10
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 4e-09
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 2e-08
1iye_A309 Branched-chain amino acid aminotransferase; hexame 8e-08
3u0g_A328 Putative branched-chain amino acid aminotransfera; 1e-06
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 2e-06
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 8e-05
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 9e-05
3dth_A372 Branched-chain amino acid aminotransferase; open t 1e-04
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Length = 315 Back     alignment and structure
 Score = 73.9 bits (182), Expect = 6e-15
 Identities = 44/345 (12%), Positives = 86/345 (24%), Gaps = 103/345 (29%)

Query: 4   TRIVFSNGVVSQASD--TPSVSTFLQERRGA------YTTTRTHNNGSCLLFWERHLRRL 55
             IV   G   +  +   P V                + T    +         RH  R 
Sbjct: 16  ILIVEPYGGSIRQQNPNLPMVFWD---DAALTRGDGIFETLLIRDG--HACNVRRHGERF 70

Query: 56  ASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALK 115
            +SA +L                   +  P        WE   +  +             
Sbjct: 71  KASAALLG------------------LPEPILED----WEKATQMGIES---------WY 99

Query: 116 ERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLA 175
              +  E + T  +S       G  + G         +++             G     +
Sbjct: 100 SHPNAGEASCTWTLSR------GRSSTGLA----SGWLTITPVSSDKLAQREHGVSVMTS 149

Query: 176 LVGRGRDVAEAKYSDWVRL------RKPLEKLRP--------PSV-----------TELL 210
             G   D          R       R P   L           ++            +++
Sbjct: 150 SRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTLAYAANMAALRYAKSNGFDDVI 209

Query: 211 LSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQL 270
            ++   ++LEG+ +       K +                 +++T      +LPG  +  
Sbjct: 210 FTDGD-RVLEGATSTVVSF--KGD-----------------KIRTPSPGGDILPGTTQAA 249

Query: 271 VIEVCRSKGIPIRELASSWSQHELWK--EAFITSSLRVLQHVESI 313
           +      KG   +E     S  +L+     ++ SS+R    V  +
Sbjct: 250 LFAHATEKGWRCKE--KDLSIDDLFGADSVWLVSSVRGPVRVTRL 292
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Length = 269 Back     alignment and structure
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Length = 269 Back     alignment and structure
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Length = 272 Back     alignment and structure
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Length = 277 Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Length = 221 Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Length = 285 Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Length = 194 Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Length = 246 Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Length = 309 Back     alignment and structure
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Length = 328 Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Length = 308 Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Length = 386 Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Length = 365 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 100.0
3u0g_A328 Putative branched-chain amino acid aminotransfera; 100.0
1iye_A309 Branched-chain amino acid aminotransferase; hexame 100.0
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 100.0
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 100.0
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 100.0
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 100.0
4dqn_A345 Putative branched-chain amino acid aminotransfera; 100.0
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 100.0
3dth_A372 Branched-chain amino acid aminotransferase; open t 100.0
3dtg_A372 Branched-chain amino acid aminotransferase; open t 100.0
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 100.0
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 100.0
3uzo_A358 Branched-chain-amino-acid aminotransferase; BCAT, 100.0
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 100.0
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 100.0
3qqm_A221 MLR3007 protein; structural genomics, joint center 100.0
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 100.0
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Back     alignment and structure
Probab=100.00  E-value=8.2e-54  Score=410.06  Aligned_cols=270  Identities=16%  Similarity=0.178  Sum_probs=224.1

Q ss_pred             EEEECCeeecCCCCCcccccccC---CCeEEEEEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 017872            6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI   82 (365)
Q Consensus         6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~   82 (365)
                      ++|+||+++ +.+++.++++|++   |||+|||||+++|  ++|+|++|++||.+||+.|+|+.|               
T Consensus         2 ~~~~nG~~~-~~~~~~i~~~d~g~~yGdgvFEtir~~~g--~~f~l~~Hl~RL~~Sa~~l~i~~~---------------   63 (277)
T 3daa_A            2 YTLWNDQIV-KDEEVKIDKEDRGYQFGDGVYEVVKVYNG--EMFTVNEHIDRLYASAEKIRITIP---------------   63 (277)
T ss_dssp             EEEETTEEE-EGGGCCBCTTBHHHHTCCEEEEEEEEETT--EETTHHHHHHHHHHHHHHTTCCCS---------------
T ss_pred             EEEECCEEe-EhHHCeechhhhHHhcccEEEEEEEEECC--EEcCHHHHHHHHHHHHHhcCCCCC---------------
Confidence            789999999 8888999999884   9999999999999  899999999999999999999855               


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCC-CCCccCCCCCCCCcceeEEEEeecCC
Q 017872           83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGK-LSGIENMGSDDFLGVFDVSVHFSGYV  161 (365)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~-~~~~~~~g~~~~~~~~~~~v~~~~~~  161 (365)
                            ++.+.+.+.+.+++.             .++..+++||+++++|.+. ++.+     +.....|+++|.+.|++
T Consensus        64 ------~~~~~l~~~i~~li~-------------~n~~~~~~lri~vtrG~~~r~~~~-----p~~~~~~~~~i~~~p~~  119 (277)
T 3daa_A           64 ------YTKDKFHQLLHELVE-------------KNELNTGHIYFQVTRGTSPRAHQF-----PENTVKPVIIGYTKENP  119 (277)
T ss_dssp             ------SCHHHHHHHHHHHHH-------------HHTCCSEEEEEEEESCBCSCCSSC-----CSSCCCCEEEEEEEECC
T ss_pred             ------CCHHHHHHHHHHHHH-------------hcCCCcEEEEEEEEecCCCcCCCC-----CCCCCCcEEEEEEEECC
Confidence                  234444455555442             3445689999999998642 2221     10245688999999987


Q ss_pred             CccccccCCCcEEEEeccccc-CCcccccchhhcHHHHHHhCCCCCcEEEEeCCCCeEEecCcceEEEEEcCCCCcchhh
Q 017872          162 PFVFGVEGTGARLALVGRGRD-VAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDK  240 (365)
Q Consensus       162 ~~~~~~~~~Gv~l~~~~~~r~-~~~~K~~~~~~~~~~l~~a~~~g~de~lL~~~gg~v~Egs~sN~F~v~~~~~~~~~~~  240 (365)
                      ++ ...+.+|+++.+++..|. .+.+|+.||........+|+++|+||+|+.++| +|+||+++|||++++++       
T Consensus       120 ~~-~~~~~~gv~~~~~~~~r~~~~~~Kt~nyl~~~la~~eA~~~g~~e~l~l~~g-~v~E~~~sNif~~~~~~-------  190 (277)
T 3daa_A          120 RP-LENLEKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAILHRNN-TVTEGSSSNVFGIKDGI-------  190 (277)
T ss_dssp             CC-HHHHHHCEEEEEEECCCCSCTTSCBSCCHHHHHHHHHHHHTTCSEEEEEETT-EEEEETTBEEEEEETTE-------
T ss_pred             CC-hHHHhCCeEEEEecCccccCCCcchhhhHHHHHHHHHHHHCCCCEEEEEcCC-EEEEcCceEEEEEECCE-------
Confidence            53 234567999998876553 468999888655445556888999999765677 99999999999999987       


Q ss_pred             hhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEEEEEcCCcccc
Q 017872          241 FLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWE  320 (365)
Q Consensus       241 ~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV~~i~~~~~~~  320 (365)
                                  |+|||+++++||||||+.||++|+++|++|+|+.++++||..|||+|+|||++||+||++||+     
T Consensus       191 ------------l~TP~~~~~iL~GitR~~vl~~~~~~g~~v~e~~i~~~el~~adevf~~ns~~~i~pV~~id~-----  253 (277)
T 3daa_A          191 ------------LYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEIDG-----  253 (277)
T ss_dssp             ------------EEECCSSTTSCCCHHHHHHHHHHHHTTCCEECCCCBHHHHHTCSEEEEEETTTEEEEEEEETT-----
T ss_pred             ------------EECCCCcCCCCccHHHHHHHHHHHHcCCeEEEEeCCHHHHHhcCeeeeecChhhEEEEEEECC-----
Confidence                        999999999999999999999999999999999999999999999999999999999999998     


Q ss_pred             cccccccccccccccccCCCccHHHHHHHHHHHHHH
Q 017872          321 LQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERA  356 (365)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~  356 (365)
                                   ..+.+|.+||+|++|+++|.+.+
T Consensus       254 -------------~~~~~g~~g~~t~~L~~~~~~~i  276 (277)
T 3daa_A          254 -------------KLIRDGKVGEWTRKLQKQFETKI  276 (277)
T ss_dssp             -------------EESTTSSCCHHHHHHHHHHHTTC
T ss_pred             -------------EECCCCCcCHHHHHHHHHHHHhc
Confidence                         24556789999999999998653
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Back     alignment and structure
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Back     alignment and structure
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans} Back     alignment and structure
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Back     alignment and structure
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A* Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Back     alignment and structure
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A* Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 365
d1iyea_304 e.17.1.1 (A:) Branched-chain aminoacid aminotransf 2e-06
d1daaa_277 e.17.1.1 (A:) D-aminoacid aminotransferase {Bacill 2e-05
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Length = 304 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 45/326 (13%), Positives = 87/326 (26%), Gaps = 71/326 (21%)

Query: 31  GAYTTTRTHNN--GSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSS 88
             +   R +++  G  +     H++RL  SA+I        +                  
Sbjct: 31  SVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQSID----------------- 73

Query: 89  SSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFL 148
                     + ++  +   +  I          + V          +      G+    
Sbjct: 74  ----ELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGA 129

Query: 149 GVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTE 208
              +  +                      G         Y   + +     +        
Sbjct: 130 EALEQGIDAMVSSWNRAAPNTIPTAAKAGGN--------YLSSLLVGSEARRHGYQEGIA 181

Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
           L   +    + EG+  N F V  KD                   + T P +   LPG+ R
Sbjct: 182 L---DVNGYISEGAGENLFEV--KDG-----------------VLFTPPFTSSALPGITR 219

Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHVESIQVPKTWELQESDCWN 328
             +I++ +  GI +RE   S     L  E F++ +   +  V S+               
Sbjct: 220 DAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVD-------------- 265

Query: 329 DIAWEQKLFEGGPGMITKTIQEEIME 354
                 ++ EG  G +TK IQ+    
Sbjct: 266 ----GIQVGEGRCGPVTKRIQQAFFG 287
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Length = 277 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
d1iyea_304 Branched-chain aminoacid aminotransferase {Escheri 100.0
d1daaa_277 D-aminoacid aminotransferase {Bacillus sp., strain 100.0
d1i2ka_269 Aminodeoxychorismate lyase {Escherichia coli [TaxI 100.0
d2a1ha1363 Branched-chain aminoacid aminotransferase {Human ( 100.0
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-52  Score=400.43  Aligned_cols=276  Identities=18%  Similarity=0.199  Sum_probs=223.0

Q ss_pred             eEEEECCeeecCCCCCcccccccC---CCeEEEEEEEEcCc--ccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 017872            5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNG--SCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGL   79 (365)
Q Consensus         5 ~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~--~~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~   79 (365)
                      -++|+||+++ +.+++.||++|++   |||||||||+++|.  ..+|+|++|++||.+||+.|+|+.|.           
T Consensus         3 ~~i~~nG~~~-~~~~a~i~~~d~g~~yGdgvFEt~r~~~g~~~~~lf~l~~Hl~RL~~Sa~~l~i~~~~-----------   70 (304)
T d1iyea_           3 DYIWFNGEMV-RWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQ-----------   70 (304)
T ss_dssp             SEEEETTEEE-EGGGCCCCTTCHHHHHCCEEECCEEEECCTTSSEEETHHHHHHHHHHHHHHHTCCCCS-----------
T ss_pred             CEEEECCEEe-ehHHCccCccccHHhhceeeeecEEEEECCCCCeecCHHHHHHHHHHhcccccCCCcc-----------
Confidence            3899999999 8888999999985   99999999999982  12789999999999999999998662           


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhhhhhcCCCcceEEEEEEEecCCCCCCccCCCCC-CCCcceeEEEEee
Q 017872           80 EPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSD-DFLGVFDVSVHFS  158 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~li~~~~~~~l~~~l~~~~~~~~~~iri~vt~g~~~~~~~~~~g~~-~~~~~~~~~v~~~  158 (365)
                                    +.+.+.+++.+.+         +.++..++++|+.++++.+..      |.. +....+.+++.+.
T Consensus        71 --------------~~~~~~~~~~~~v---------~~n~~~~~~vr~~~~~~~~~~------~~~~~~~~~~~~~~~~~  121 (304)
T d1iyea_          71 --------------SIDELMEACRDVI---------RKNNLTSAYIRPLIFVGDVGM------GVNPPAGYSTDVIIAAF  121 (304)
T ss_dssp             --------------CHHHHHHHHHHHH---------HHTTCSSEEEEEEEEECSSCS------SSSCCTTCCEEEEEEEE
T ss_pred             --------------hhhHHHHHHHHHH---------HhcccccceEEEEeeeccccc------ccCCccccccceeeccc
Confidence                          2233333333221         256677899999999876431      222 2335566777777


Q ss_pred             cCCCc-cccccCCCcEEEEecccccCCc------ccccchhhcHHHHHHhCCCCCcEEE-EeCCCCeEEecCcceEEEEE
Q 017872          159 GYVPF-VFGVEGTGARLALVGRGRDVAE------AKYSDWVRLRKPLEKLRPPSVTELL-LSNDGDQLLEGSITNFFVVC  230 (365)
Q Consensus       159 ~~~~~-~~~~~~~Gv~l~~~~~~r~~~~------~K~~~~~~~~~~l~~a~~~g~de~l-L~~~gg~v~Egs~sN~F~v~  230 (365)
                      |...+ ....+..|+++.+....|..+.      .|+.||........+|++.|+||+| ++.+| +|+||+++|||+|+
T Consensus       122 ~~~~~~~~~~~~~gi~~~~~~~~r~~~~~~~~~~~k~~n~~~~~~a~~~A~~~g~deal~ld~~g-~v~E~s~sNif~vk  200 (304)
T d1iyea_         122 PWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNG-YISEGAGENLFEVK  200 (304)
T ss_dssp             CCCCTTCTTHHHHCEEEEECSSCCCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECTTS-BEEEETTBEEEEEE
T ss_pred             cccccCChhhccCceEEEEeeccccCCCCcccccccccCccccchhhhHHHHcCCcceeeecccC-eEeecCceeEEEEe
Confidence            76543 2334567999999888876542      3555665555556678899999996 55577 99999999999999


Q ss_pred             cCCCCcchhhhhhccCCCCceEEEecCCCCCccccHHHHHHHHHHHhCCCCEEEEecCHHHHhhhceeeeeecccceEEE
Q 017872          231 RKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSSLRVLQHV  310 (365)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giLpGItR~~vle~a~~~gi~v~E~~i~~~eL~~adEvFltnS~~gi~PV  310 (365)
                      +++                   |+|||+++++|+||||+.|+++|++.|++|+|+.++++||.+|||+|+|||++||+||
T Consensus       201 ~~~-------------------l~TP~~~~~iL~GItR~~vi~~~~~~gi~v~e~~i~~~~L~~AdEvfltns~~gi~PV  261 (304)
T d1iyea_         201 DGV-------------------LFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPV  261 (304)
T ss_dssp             TTE-------------------EEECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBTTHHHHCSEEEEEETTTEEEEE
T ss_pred             CCE-------------------EEEeecccccCCchHHHHHHHHhhhcccceeeccCCHHHHHhhCHHhhhCCCCeEEEE
Confidence            998                   9999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCcccccccccccccccccccccCCCccHHHHHHHHHHHHHHhcc
Q 017872          311 ESIQVPKTWELQESDCWNDIAWEQKLFEGGPGMITKTIQEEIMERAGLG  359 (365)
Q Consensus       311 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~vt~~L~~~~~~~~~~~  359 (365)
                      ++||+                  ..+++|.+||+|++|+++|.+++...
T Consensus       262 ~~id~------------------~~~~~g~~Gpit~~L~~~~~~i~~g~  292 (304)
T d1iyea_         262 RSVDG------------------IQVGEGRCGPVTKRIQQAFFGLFTGE  292 (304)
T ss_dssp             EEETT------------------EECTTSSCCHHHHHHHHHHHGGGTTS
T ss_pred             EEECC------------------EEcCCCCcCHHHHHHHHHHHHHHcCC
Confidence            99998                  34677899999999999999876543
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Back     information, alignment and structure
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure