Citrus Sinensis ID: 017879

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
MERHGRVSEGSQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPVSFFWHLLLHYYALHE
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccc
ccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHEEccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccHHEEHHHHHHccc
merhgrvsegsqsdpspewtapgtetgpeglgvgaesyperpdeadcihyvrtgfcaygsrcrfnhprdrgsvmgaaragggefpervgqpvcqyymrtgtckygasckyhhprqgagsvsnvslnyygyplrpgekeCSYYMKtrqckfgatckfhhpqpagvpaptpspapqvaavptpvpapalypplqspsvpsaqqygvvvarppllhgsyvqgpygpvlvspsmfslqgwspyatslnpisspgtgtqssvgsssiygitqlsasapaytgtyqslpssvgpssssqkehpfperpgqqeCQYYmktgdckfgsscrfhhprelivpkmdvtlspfglplrpvSFFWHLLLHYYALHE
merhgrvsegsqsdpspewtapgtetgpeGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAaragggefpervgQPVCQYYMRTGTCKYGASCKYHHprqgagsvsnvSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPVSFFWHLLLHYYALHE
MERHGRVSEGSQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHpqpagvpaptpspapqvaavptpvpapalyppLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPIsspgtgtqssvgsssIYGITQLSASAPAYTGTYQslpssvgpssssQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPVSFFWHLLLHYYALHE
********************************************ADCIHYVRTGFCAYGSRCRFNHPR****VM****AGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFH*******************************************QYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYA******************************************************************CQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPVSFFWHLLLHYYAL**
********************************************ADCIHYVRTGFCAYGSRCRFNHPRD********************QPVCQYYMRTGTCKYGASCKYHH*********************PGEKECSYYMKTRQCKFGATC**********************************************************************************************************************************************************YYMKTGDCKFGSSCRFHH****************GLPLRPVSFFWHLLLHYY*L**
*************************TGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPI*************SSIYGITQLSASAPAYTGTY**********************PGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPVSFFWHLLLHYYALHE
***************************************ERPDEADCIHYVRTGFCAYGSRCRFNHPRD*************EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP*******************************************GVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNP*****************************************************PERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPVSFFWHLLLHYYALHE
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MERHGRVSEGSQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPVSFFWHLLLHYYALHE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query364 2.2.26 [Sep-21-2011]
Q6NPN3 465 Zinc finger CCCH domain-c yes no 0.912 0.713 0.610 1e-111
Q9SQU4462 Zinc finger CCCH domain-c no no 0.928 0.731 0.598 1e-105
Q84W91 468 Zinc finger CCCH domain-c no no 0.876 0.681 0.541 1e-100
Q5NAW2 476 Zinc finger CCCH domain-c yes no 0.796 0.609 0.528 1e-88
Q5NAV3 466 Zinc finger CCCH domain-c no no 0.810 0.633 0.489 7e-77
Q2R4J4444 Zinc finger CCCH domain-c no no 0.826 0.677 0.454 3e-72
Q9SWF9417 Zinc finger CCCH domain-c N/A no 0.802 0.700 0.459 9e-71
Q5JLB5439 Zinc finger CCCH domain-c no no 0.807 0.669 0.453 6e-70
Q2QT65454 Zinc finger CCCH domain-c no no 0.804 0.645 0.448 3e-69
Q8GXX7397 Zinc finger CCCH domain-c no no 0.771 0.707 0.435 1e-67
>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1 Back     alignment and function desciption
 Score =  401 bits (1030), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/362 (61%), Positives = 263/362 (72%), Gaps = 30/362 (8%)

Query: 1   MERHGRVSEG-SQSDPSPEWTAPGTETGPEG---------LGVGAESYPERPDEADCIHY 50
           MER+G   E  S+SDPS EW+A GTETG E           G G E++PERPDE DCI+Y
Sbjct: 1   MERYGGAGEDESRSDPSHEWSAQGTETGIEASMWRLGLRGGGGGGETFPERPDEPDCIYY 60

Query: 51  VRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKY 110
           +RTG C YGSRCRFNHPR+R  V+G  R   GEFPER+GQPVCQ++MRTGTCK+GASCKY
Sbjct: 61  LRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKY 120

Query: 111 HHPRQGAG--SVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPT 168
           HHPRQG G  SV+ VSLNY G+PLRPGEKECSY+M+T QCKFG+TC++HHP P GV AP+
Sbjct: 121 HHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPS 180

Query: 169 PSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGP--YGPVLV 226
                Q++A PT      +YP LQS +VPS+QQYGVV+ARP LL GSYVQ P  YG +++
Sbjct: 181 QQQQQQLSAGPT------MYPSLQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVL 234

Query: 227 SPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSV 286
            P M    GW+PY  S++ + SP  GTQ S+G+SS+YGIT LS SAPA    YQS PSS 
Sbjct: 235 PPGMVPYSGWNPYQASVSAMPSP--GTQPSMGTSSVYGITPLSPSAPA----YQSGPSST 288

Query: 287 GPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPL 346
           G    S KE  FP+RP Q ECQY+M+TGDCKFG+SCRFHHP E   P+   TLS  GLPL
Sbjct: 289 G---VSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEAS-TLSHIGLPL 344

Query: 347 RP 348
           RP
Sbjct: 345 RP 346

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2 Back     alignment and function description
>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2 Back     alignment and function description
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2 SV=2 Back     alignment and function description
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1 Back     alignment and function description
>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2 Back     alignment and function description
>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2 Back     alignment and function description
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
224107375456 predicted protein [Populus trichocarpa] 0.939 0.75 0.697 1e-137
255551693 481 nucleic acid binding protein, putative [ 0.934 0.706 0.726 1e-133
224123154 477 predicted protein [Populus trichocarpa] 0.939 0.716 0.683 1e-128
449432823 481 PREDICTED: zinc finger CCCH domain-conta 0.945 0.715 0.638 1e-123
356521891 484 PREDICTED: zinc finger CCCH domain-conta 0.947 0.712 0.653 1e-122
356563888 484 PREDICTED: zinc finger CCCH domain-conta 0.947 0.712 0.653 1e-121
357478675 582 Zinc finger CCCH domain-containing prote 0.958 0.599 0.614 1e-121
147853205 518 hypothetical protein VITISV_003243 [Viti 0.939 0.660 0.679 1e-117
357478677379 Zinc finger CCCH domain-containing prote 0.931 0.894 0.620 1e-117
225432344 478 PREDICTED: zinc finger CCCH domain-conta 0.939 0.715 0.679 1e-117
>gi|224107375|ref|XP_002314462.1| predicted protein [Populus trichocarpa] gi|222863502|gb|EEF00633.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/354 (69%), Positives = 286/354 (80%), Gaps = 12/354 (3%)

Query: 1   MERHGRVSEGSQSDPSPEWTAPGTETGPEG------LGVGAESYPERPDEADCIHYVRTG 54
           M+R+GR  EGSQSDP+ EWT  G ETG E       +G     YPERP+E DC++Y+RTG
Sbjct: 1   MDRYGRGQEGSQSDPAQEWTGSGQETGLEEGVWQLEIGETESEYPERPNEQDCMYYLRTG 60

Query: 55  FCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPR 114
           FC YG+RCR+NHPRDR +V+GAARAGGGEFPERVGQP+CQYYMRTGTCK+GASCKY+HP+
Sbjct: 61  FCGYGARCRYNHPRDRTAVLGAARAGGGEFPERVGQPLCQYYMRTGTCKFGASCKYNHPK 120

Query: 115 QGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQ 174
           QG  SV  VSLNYYGYPLRPGE+EC+YY+KT QCKFGATCKFHHPQPA +  P  S APQ
Sbjct: 121 QGGSSVRPVSLNYYGYPLRPGERECTYYIKTGQCKFGATCKFHHPQPANMQIPAQSLAPQ 180

Query: 175 VAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQ 234
           VA+    VPA  LYP +QSPSVPS+QQYGV+VARPPLL GSYVQGPYGPVL+SPS+    
Sbjct: 181 VAS----VPAHTLYPTMQSPSVPSSQQYGVMVARPPLLPGSYVQGPYGPVLLSPSLVPYP 236

Query: 235 GWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQK 294
            WSPY   ++P++SP    Q +VGS S+YGI+ LS SAPAYTG YQS+P++ GPSSSSQK
Sbjct: 237 SWSPYPAPVSPVASP--NAQPAVGSGSVYGISPLSPSAPAYTGAYQSIPTAKGPSSSSQK 294

Query: 295 EHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRP 348
           EH FPERPGQ ECQYYMKTGDCKF SSCR+HHP EL+  K +V LSP GLPLRP
Sbjct: 295 EHVFPERPGQPECQYYMKTGDCKFESSCRYHHPPELVTSKTNVVLSPMGLPLRP 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255551693|ref|XP_002516892.1| nucleic acid binding protein, putative [Ricinus communis] gi|223543980|gb|EEF45506.1| nucleic acid binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224123154|ref|XP_002330352.1| predicted protein [Populus trichocarpa] gi|222871556|gb|EEF08687.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449432823|ref|XP_004134198.1| PREDICTED: zinc finger CCCH domain-containing protein 58-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356521891|ref|XP_003529584.1| PREDICTED: zinc finger CCCH domain-containing protein 32-like [Glycine max] Back     alignment and taxonomy information
>gi|356563888|ref|XP_003550189.1| PREDICTED: zinc finger CCCH domain-containing protein 58-like [Glycine max] Back     alignment and taxonomy information
>gi|357478675|ref|XP_003609623.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355510678|gb|AES91820.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|147853205|emb|CAN78551.1| hypothetical protein VITISV_003243 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357478677|ref|XP_003609624.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355510679|gb|AES91821.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225432344|ref|XP_002276435.1| PREDICTED: zinc finger CCCH domain-containing protein 32 [Vitis vinifera] gi|297736890|emb|CBI26091.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
TAIR|locus:2081066462 AT3G06410 [Arabidopsis thalian 0.434 0.341 0.670 3.2e-102
TAIR|locus:2182988465 AT5G18550 [Arabidopsis thalian 0.434 0.339 0.676 6.7e-100
TAIR|locus:2043368 468 AT2G47850 [Arabidopsis thalian 0.406 0.316 0.601 8e-91
TAIR|locus:2075477397 ZFN1 "zinc finger protein 1" [ 0.332 0.304 0.614 1.6e-67
TAIR|locus:2171407375 ZFN3 "zinc finger nuclease 3" 0.346 0.336 0.578 4.2e-63
TAIR|locus:2010562404 AT1G04990 [Arabidopsis thalian 0.346 0.311 0.5 5.8e-51
TAIR|locus:2101170448 AT3G48440 [Arabidopsis thalian 0.332 0.270 0.455 4.7e-44
TAIR|locus:2087775524 HUA1 "ENHANCER OF AG-4 1" [Ara 0.324 0.225 0.460 2.7e-41
TAIR|locus:100623071882 AT1G48195 [Arabidopsis thalian 0.208 0.926 0.486 1.2e-17
TAIR|locus:2013763 321 AT1G29570 [Arabidopsis thalian 0.101 0.115 0.486 1.2e-05
TAIR|locus:2081066 AT3G06410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 621 (223.7 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
 Identities = 116/173 (67%), Positives = 133/173 (76%)

Query:     1 MERHGRVSE-GSQSDPSPEWTAPGTETGPE------GL------GVGAESYPERPDEADC 47
             MER+GR  E GS+SDPS EWT+ G ET  E      GL      G G ESYPERPDE DC
Sbjct:     1 MERYGRPGEEGSRSDPSLEWTSHGGETAVEAPMWRLGLSGGGGGGGGGESYPERPDEPDC 60

Query:    48 IHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGAS 107
             I+Y+RTG C YGSRCRFNHPRDRG+V+G  R   G  PER+G PVCQ++MRTGTCK+GAS
Sbjct:    61 IYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQHFMRTGTCKFGAS 120

Query:   108 CKYHHPRQGAG--SVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 158
             CKYHHPRQG G  SV+ VSL+Y GYPLRPGEKECSYY++T QCKFG TC+F+H
Sbjct:   121 CKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSYYLRTGQCKFGLTCRFNH 173
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2182988 AT5G18550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043368 AT2G47850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075477 ZFN1 "zinc finger protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171407 ZFN3 "zinc finger nuclease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010562 AT1G04990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101170 AT3G48440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087775 HUA1 "ENHANCER OF AG-4 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230718 AT1G48195 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013763 AT1G29570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5NAW2C3H6_ORYSJNo assigned EC number0.52830.79670.6092yesno
Q6NPN3C3H58_ARATHNo assigned EC number0.61040.91200.7139yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 6e-08
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 1e-07
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 7e-07
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 4e-06
smart0035627 smart00356, ZnF_C3H1, zinc finger 2e-04
smart0035627 smart00356, ZnF_C3H1, zinc finger 0.002
PRK11633226 PRK11633, PRK11633, cell division protein DedD; Pr 0.003
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.003
pfam04625 407 pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi 0.003
PRK05641153 PRK05641, PRK05641, putative acetyl-CoA carboxylas 0.004
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information 
 Score = 47.6 bits (114), Expect = 6e-08
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 89  GQPVCQYYMRTGTCKYGASCKYHHPR 114
              +C+++ RTGTCKYG  CK+ H +
Sbjct: 2   KTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region Back     alignment and domain information
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 364
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 99.94
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 99.56
KOG1040325 consensus Polyadenylation factor I complex, subuni 99.06
KOG1040325 consensus Polyadenylation factor I complex, subuni 98.74
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 98.58
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 98.57
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 98.51
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 98.39
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 98.33
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 98.31
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 98.3
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 98.16
KOG4791 667 consensus Uncharacterized conserved protein [Funct 97.9
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 97.82
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 97.8
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 97.78
smart0035627 ZnF_C3H1 zinc finger. 97.76
smart0035627 ZnF_C3H1 zinc finger. 97.71
KOG1763343 consensus Uncharacterized conserved protein, conta 97.32
KOG2333 614 consensus Uncharacterized conserved protein [Gener 97.29
KOG1763343 consensus Uncharacterized conserved protein, conta 97.21
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 97.04
KOG2333 614 consensus Uncharacterized conserved protein [Gener 97.03
KOG4791 667 consensus Uncharacterized conserved protein [Funct 96.98
KOG2185486 consensus Predicted RNA-processing protein, contai 96.66
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 96.55
COG5252299 Uncharacterized conserved protein, contains CCCH-t 96.36
COG5252299 Uncharacterized conserved protein, contains CCCH-t 96.29
KOG2185 486 consensus Predicted RNA-processing protein, contai 96.19
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 95.97
KOG3702681 consensus Nuclear polyadenylated RNA binding prote 95.97
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 95.81
COG5152259 Uncharacterized conserved protein, contains RING a 94.74
COG5152259 Uncharacterized conserved protein, contains RING a 94.63
KOG3702681 consensus Nuclear polyadenylated RNA binding prote 93.57
KOG2202260 consensus U2 snRNP splicing factor, small subunit, 91.05
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 90.59
KOG1039 344 consensus Predicted E3 ubiquitin ligase [Posttrans 89.62
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 89.49
PF1065023 zf-C3H1: Putative zinc-finger domain; InterPro: IP 81.61
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=99.94  E-value=1.1e-25  Score=219.89  Aligned_cols=153  Identities=38%  Similarity=0.740  Sum_probs=117.4

Q ss_pred             CCCCCCCCCCCCCCCCCCccccCC------CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCC
Q 017879           10 GSQSDPSPEWTAPGTETGPEGLGV------GAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGE   83 (364)
Q Consensus        10 ~~~~~~~~~w~~~~~~~~~~~~~~------~~~~~P~Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~   83 (364)
                      ...++...+|.............+      ....||+++.+.+|.+|++++.|.+++.|+++|+..+.......+.....
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~  125 (332)
T KOG1677|consen   46 STRSDNSKQPSELAAEDSSPGTELEQLRTPGSSPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGER  125 (332)
T ss_pred             CcccccccCcccccccccCcccccchhcccccCcCCCCCCccccccccccCCCCCCCCCCccCcccccccCCcccccccc
Confidence            344566666665422222222222      34569999999999999999999999999999997443332211123457


Q ss_pred             CCCCcCCcccccccccCCCCC-CCCCCCCCCCCCCCCcCcccccCCCCCCCCCccccccccccccCCCCCCCcccCCCCC
Q 017879           84 FPERVGQPVCQYYMRTGTCKY-GASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA  162 (364)
Q Consensus        84 ~Per~k~~~Cr~flktG~Ck~-G~~CkFsH~~~~~~~~~~~~ln~~g~P~rpg~~~C~fY~rtG~Ck~G~~CrF~Hp~~~  162 (364)
                      .+++.++++|++|.++|.|+| |++|+|+|..++.+...  .++..+.+.+.++++|.+|++||.|+||++|+|+|+...
T Consensus       126 ~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~  203 (332)
T KOG1677|consen  126 KPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPE  203 (332)
T ss_pred             CcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcc
Confidence            899999999999999999999 99999999988764322  456677888999999999999999999999999999985


Q ss_pred             CC
Q 017879          163 GV  164 (364)
Q Consensus       163 ~~  164 (364)
                      ..
T Consensus       204 ~~  205 (332)
T KOG1677|consen  204 DR  205 (332)
T ss_pred             cc
Confidence            54

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification] Back     alignment and domain information
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 4e-14
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 1e-13
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 2e-05
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 8e-05
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 2e-04
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 1e-06
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 2e-06
2rhk_C72 Cleavage and polyadenylation specificity factor su 5e-06
2rhk_C72 Cleavage and polyadenylation specificity factor su 1e-05
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 1e-04
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 3e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-04
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 4e-04
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 7e-04
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 4e-04
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 7e-04
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
 Score = 65.7 bits (160), Expect = 4e-14
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 93  CQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGA 152
           C+ Y  +G C+YGA C++ H            L       +   + C  +    +C +G+
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLG--------ELRQANRHPKYKTELCHKFKLQGRCPYGS 66

Query: 153 TCKFHHPQ 160
            C F H  
Sbjct: 67  RCHFIHNP 74
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70 Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query364
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.47
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 99.47
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 99.44
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 99.42
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.26
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 99.26
2rhk_C72 Cleavage and polyadenylation specificity factor su 99.24
2rhk_C72 Cleavage and polyadenylation specificity factor su 99.24
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 99.1
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 99.1
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 98.96
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.89
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.88
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.76
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.72
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.63
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 98.62
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 97.37
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 97.44
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 96.55
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 96.44
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 94.59
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 95.52
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 94.1
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 93.23
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 92.62
3v33_A223 Ribonuclease ZC3H12A; rossmann-like sandwich fold, 82.38
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=99.47  E-value=3.3e-14  Score=111.86  Aligned_cols=70  Identities=27%  Similarity=0.681  Sum_probs=58.0

Q ss_pred             CCCCccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcCCcccccccccCCCCCCCCCCCCCCCCCCCCc
Q 017879           41 RPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSV  120 (364)
Q Consensus        41 Rp~~~~C~yflrtG~C~~G~~CkF~Hp~~~~~~~~~~r~~~~~~Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~~~~  120 (364)
                      ..++.+|+||++ |.|++|++|+|+|+.+..                 ++++|+||+++|.|. |++|+|.|.....   
T Consensus         7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~---   64 (77)
T 2d9n_A            7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPES---   64 (77)
T ss_dssp             CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS---
T ss_pred             CCcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCccc---
Confidence            456789999997 999999999999987632                 356899999989999 8999999986532   


Q ss_pred             CcccccCCCCCCCCCcccccccccccc
Q 017879          121 SNVSLNYYGYPLRPGEKECSYYMKTRQ  147 (364)
Q Consensus       121 ~~~~ln~~g~P~rpg~~~C~fY~rtG~  147 (364)
                                    ++++|++|++ |.
T Consensus        65 --------------~~~~C~~f~~-g~   76 (77)
T 2d9n_A           65 --------------KIKDCPWSGP-SS   76 (77)
T ss_dssp             --------------SCSSSSCCTT-TC
T ss_pred             --------------cCCCCccccc-CC
Confidence                          3468999997 63
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 364
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 1e-04
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 7e-04
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 0.002
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 2e-04
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 5e-04
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 0.002
d1rgoa234 g.66.1.1 (A:187-220) Butyrate response factor 2 (T 5e-04
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 47 CIHYVRTGFCAYGSRCRFNH 66
          C  +  +G C YG +C+F H
Sbjct: 9  CRPFEESGTCKYGEKCQFAH 28
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query364
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 98.27
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 98.26
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.15
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.11
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.11
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.1
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.34
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.26
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 95.88
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 95.59
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 85.27
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=2.2e-07  Score=63.10  Aligned_cols=33  Identities=30%  Similarity=0.786  Sum_probs=29.5

Q ss_pred             CCCcCCcccccccccCCCCCCCCCCCCCCCCCC
Q 017879           85 PERVGQPVCQYYMRTGTCKYGASCKYHHPRQGA  117 (364)
Q Consensus        85 Per~k~~~Cr~flktG~Ck~G~~CkFsH~~~~~  117 (364)
                      +.++|+.+|++|+++|.|.+|++|.|+|..++.
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~EL   36 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGEL   36 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHh
Confidence            346899999999999999999999999987765
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure