Citrus Sinensis ID: 017950


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MDRFHLPERRMDSHLSIGYYIKTLRRHRKIAGYYKRQEKLLKGYNEVDTFTELGILPGSLTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATHQLEHKPKKL
cccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccc
cccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccEccEEEEEEcccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccc
mdrfhlperrmdshLSIGYYIKTLRRHRKIAGYYKRQEKLLKgynevdtftelgilpgslTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYamkkpnqyqypigknrmqpVGIVVFASIMATLGLQILFESGRelfteaqperdpekekWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVdfnathqlehkpkkl
mdrfhlperrmdshlsiGYYIKTLRRHRKIAGYYKRQEKLLKGYNEVDTFTELGILPGSLTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFteaqperdpekekwmigIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFnathqlehkpkkl
MDRFHLPERRMDSHLSIGYYIKTLRRHRKIAGYYKRQEKLLKGYNEVDTFTELGILPGSLTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTldslldllsGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATHQLEHKPKKL
*************HLSIGYYIKTLRRHRKIAGYYKRQEKLLKGYNEVDTFTELGILPGSLTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELF************KWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEM*********************VERAFVHVDFN************
***********************************RQEKLLKGYNEV************************ERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATHQ********
********RRMDSHLSIGYYIKTLRRHRKIAGYYKRQEKLLKGYNEVDTFTELGILPGSLTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELF**********KEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATH*********
*****LP*RRMDSHLSIGYYIKTLRRHRKIAGYYKRQEKLLKGYNEVDTFTELGILPGSLTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNAT**********
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MDRFHLPERRMDSHLSIGYYIKTLRRHRKIAGYYKRQEKLLKGYNEVDTFTELGILPGSLTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATHQLEHKPKKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
Q0WU02428 Metal tolerance protein 1 yes no 0.988 0.838 0.685 1e-143
Q9SAJ7402 Metal tolerance protein 9 no no 0.969 0.875 0.681 1e-139
Q9LDU0391 Metal tolerance protein 7 yes no 0.986 0.915 0.670 1e-134
Q5NA18415 Metal tolerance protein 5 no no 0.903 0.790 0.627 1e-117
O80632394 Metal tolerance protein 1 no no 0.928 0.855 0.607 1e-100
Q10PP8397 Metal tolerance protein 4 no no 0.944 0.863 0.515 9e-99
Q6Z7K5410 Metal tolerance protein 3 no no 0.889 0.787 0.519 7e-96
Q0DHJ5376 Metal tolerance protein 6 no no 0.848 0.819 0.526 9e-93
Q9M2P2411 Putative metal tolerance no no 0.895 0.790 0.519 8e-92
Q9ZCC5300 Protein p34 OS=Rickettsia yes no 0.741 0.896 0.247 2e-17
>sp|Q0WU02|MTP10_ARATH Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1 Back     alignment and function desciption
 Score =  507 bits (1305), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/362 (68%), Positives = 298/362 (82%), Gaps = 3/362 (0%)

Query: 1   MDRFHLPER---RMDSHLSIGYYIKTLRRHRKIAGYYKRQEKLLKGYNEVDTFTELGILP 57
           +D F LP     R D       Y +T R+ R+++ YYK+QE+LL+G+NE++T  E G   
Sbjct: 65  LDAFQLPSSTGGRHDGRTRFSRYFRTPRKERRVSEYYKKQERLLEGFNEMETIHENGFAS 124

Query: 58  GSLTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGF 117
           G  T+EEMK+LAK+ER+A++ SNA NLVLF+AKVYAS ESRS+AVIASTLDSLLDLLSGF
Sbjct: 125 GVPTEEEMKKLAKSERLAVHISNATNLVLFVAKVYASMESRSMAVIASTLDSLLDLLSGF 184

Query: 118 ILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERD 177
           ILWFTA AM+KPNQ+ YPIGK RMQPVGI+VFAS+MATLGLQ+L ESGR+L  ++    +
Sbjct: 185 ILWFTANAMRKPNQFHYPIGKRRMQPVGIIVFASVMATLGLQVLLESGRQLVAKSGIHMN 244

Query: 178 PEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKF 237
             +EKWMIGIMVSVT+VK  LM+YCR F+NEIVRAYAQDH FDV+TNSIGLATA+LA+KF
Sbjct: 245 STEEKWMIGIMVSVTIVKFLLMLYCRGFQNEIVRAYAQDHLFDVVTNSIGLATAVLAVKF 304

Query: 238 YWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIET 297
           YWWIDP GAILIALYT+  W  TV+ENV SLIGR+AP ++LAKLT+LIWNHHE+IK+I+T
Sbjct: 305 YWWIDPTGAILIALYTIATWARTVLENVHSLIGRSAPPDFLAKLTFLIWNHHEQIKHIDT 364

Query: 298 VRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATHQLE 357
           VRAY FG  YFVE D+VLP +M L EAHNIGE+LQEKLEQL EVERAFVH+DF  TH+ E
Sbjct: 365 VRAYTFGSHYFVEVDIVLPEDMRLQEAHNIGETLQEKLEQLAEVERAFVHIDFEFTHRPE 424

Query: 358 HK 359
           HK
Sbjct: 425 HK 426




Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SAJ7|MTP9_ARATH Metal tolerance protein 9 OS=Arabidopsis thaliana GN=MTP9 PE=2 SV=2 Back     alignment and function description
>sp|Q9LDU0|MTP7_ORYSJ Metal tolerance protein 7 OS=Oryza sativa subsp. japonica GN=MTP7 PE=2 SV=1 Back     alignment and function description
>sp|Q5NA18|MTP5_ORYSJ Metal tolerance protein 5 OS=Oryza sativa subsp. japonica GN=MTP5 PE=2 SV=1 Back     alignment and function description
>sp|O80632|MTP11_ARATH Metal tolerance protein 11 OS=Arabidopsis thaliana GN=MTP11 PE=2 SV=1 Back     alignment and function description
>sp|Q10PP8|MTP4_ORYSJ Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z7K5|MTP3_ORYSJ Metal tolerance protein 3 OS=Oryza sativa subsp. japonica GN=MTP3 PE=2 SV=1 Back     alignment and function description
>sp|Q0DHJ5|MTP6_ORYSJ Metal tolerance protein 6 OS=Oryza sativa subsp. japonica GN=MTP6 PE=2 SV=2 Back     alignment and function description
>sp|Q9M2P2|MTPC3_ARATH Putative metal tolerance protein C3 OS=Arabidopsis thaliana GN=MTPC3 PE=3 SV=2 Back     alignment and function description
>sp|Q9ZCC5|P34_RICPR Protein p34 OS=Rickettsia prowazekii (strain Madrid E) GN=p34 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
224101327404 metal tolerance protein [Populus trichoc 0.997 0.896 0.809 0.0
356529072 518 PREDICTED: metal tolerance protein 10-li 0.994 0.696 0.772 1e-166
225462260400 PREDICTED: metal tolerance protein 10 [V 0.994 0.902 0.778 1e-165
255555586403 cation efflux protein/ zinc transporter, 0.994 0.895 0.759 1e-161
224109072370 metal tolerance protein [Populus trichoc 0.994 0.975 0.761 1e-159
388503294401 unknown [Medicago truncatula] 1.0 0.905 0.741 1e-159
449444286400 PREDICTED: metal tolerance protein 10-li 0.994 0.902 0.753 1e-158
357462197401 Cation diffusion facilitator [Medicago t 1.0 0.905 0.738 1e-158
28628308412 cation diffusion facilitator 11 [Stylosa 0.994 0.876 0.723 1e-154
28628304406 cation diffusion facilitator 9 [Stylosan 0.936 0.837 0.741 1e-153
>gi|224101327|ref|XP_002312234.1| metal tolerance protein [Populus trichocarpa] gi|222852054|gb|EEE89601.1| metal tolerance protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 293/362 (80%), Positives = 330/362 (91%)

Query: 1   MDRFHLPERRMDSHLSIGYYIKTLRRHRKIAGYYKRQEKLLKGYNEVDTFTELGILPGSL 60
           MD+F LPERRMD+H   GY++KTLRR ++I+ YY+RQEKL++G++EVD+F ELGILPGSL
Sbjct: 42  MDKFQLPERRMDNHFGFGYFLKTLRRQKRISEYYRRQEKLVEGFHEVDSFIELGILPGSL 101

Query: 61  TQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILW 120
           +++EMKQLA+NER AIYASN ANLVLFLAKVYAS ESRSLAVIASTLDS LDLLSGFILW
Sbjct: 102 SEDEMKQLARNERGAIYASNVANLVLFLAKVYASTESRSLAVIASTLDSFLDLLSGFILW 161

Query: 121 FTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEK 180
           FTA+ M+KPNQ+QYPIGK RMQPVGIV+FAS+MATLGLQILFESGREL T AQPERDP+K
Sbjct: 162 FTAHTMRKPNQFQYPIGKQRMQPVGIVIFASVMATLGLQILFESGRELITRAQPERDPDK 221

Query: 181 EKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWW 240
           EKWMIGIMVS TVVK  L +YCRRF NEIVRAYAQDHFFDVITNSIGL TA+LAIKFYWW
Sbjct: 222 EKWMIGIMVSATVVKFVLTVYCRRFSNEIVRAYAQDHFFDVITNSIGLGTAVLAIKFYWW 281

Query: 241 IDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRA 300
           IDPIGAI+IALYTMGNW  TV+ENVWSLIGRTAP EYLAKLTYLIWNHH++IK+IETVRA
Sbjct: 282 IDPIGAIVIALYTMGNWAKTVVENVWSLIGRTAPPEYLAKLTYLIWNHHKDIKHIETVRA 341

Query: 301 YNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATHQLEHKP 360
           Y FGCQYFVE  +VLP +MSL +AHNIGE+L+EKLEQLPEVERAFVHVDF+ TH LEHK 
Sbjct: 342 YTFGCQYFVEVHIVLPQDMSLDQAHNIGETLEEKLEQLPEVERAFVHVDFDTTHHLEHKS 401

Query: 361 KK 362
           K+
Sbjct: 402 KR 403




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529072|ref|XP_003533121.1| PREDICTED: metal tolerance protein 10-like [Glycine max] Back     alignment and taxonomy information
>gi|225462260|ref|XP_002263815.1| PREDICTED: metal tolerance protein 10 [Vitis vinifera] gi|147866746|emb|CAN78996.1| hypothetical protein VITISV_013375 [Vitis vinifera] gi|297736126|emb|CBI24164.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255555586|ref|XP_002518829.1| cation efflux protein/ zinc transporter, putative [Ricinus communis] gi|223542002|gb|EEF43547.1| cation efflux protein/ zinc transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224109072|ref|XP_002315072.1| metal tolerance protein [Populus trichocarpa] gi|222864112|gb|EEF01243.1| metal tolerance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388503294|gb|AFK39713.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449444286|ref|XP_004139906.1| PREDICTED: metal tolerance protein 10-like [Cucumis sativus] gi|449475845|ref|XP_004154568.1| PREDICTED: metal tolerance protein 10-like [Cucumis sativus] gi|386783473|gb|AFJ24702.1| metal transport protein 9 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357462197|ref|XP_003601380.1| Cation diffusion facilitator [Medicago truncatula] gi|355490428|gb|AES71631.1| Cation diffusion facilitator [Medicago truncatula] Back     alignment and taxonomy information
>gi|28628308|gb|AAO38710.1| cation diffusion facilitator 11 [Stylosanthes hamata] Back     alignment and taxonomy information
>gi|28628304|gb|AAO38708.1| cation diffusion facilitator 9 [Stylosanthes hamata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
TAIR|locus:2032830428 AT1G16310 [Arabidopsis thalian 0.988 0.838 0.660 5.2e-129
TAIR|locus:2039697394 MTP11 [Arabidopsis thaliana (t 0.903 0.832 0.593 8.6e-104
TAIR|locus:2095873411 AT3G58060 [Arabidopsis thalian 0.895 0.790 0.498 6.4e-83
DICTYBASE|DDB_G0285541434 DDB_G0285541 "putative cation 0.920 0.769 0.380 1.4e-57
WB|WBGene00019841489 R02F11.3 [Caenorhabditis elega 0.768 0.570 0.347 6e-48
UNIPROTKB|G4MRQ3561 MGG_04623 "Cation efflux famil 0.768 0.497 0.350 3.2e-43
WB|WBGene00019803341 PDB1.1 [Caenorhabditis elegans 0.906 0.964 0.309 5.7e-43
ASPGD|ASPL0000076507558 AN5049 [Emericella nidulans (t 0.760 0.494 0.340 1.4e-41
ASPGD|ASPL0000052398401 AN10155 [Emericella nidulans ( 0.793 0.718 0.329 7.5e-41
WB|WBGene00044481352 ZK185.5 [Caenorhabditis elegan 0.889 0.917 0.285 5.8e-34
TAIR|locus:2032830 AT1G16310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1266 (450.7 bits), Expect = 5.2e-129, P = 5.2e-129
 Identities = 239/362 (66%), Positives = 289/362 (79%)

Query:     1 MDRFHLPER---RMDSHLSIGYYIKTLRRHRKIAGYYKRQEKLLKGYNEVDTFTELGILP 57
             +D F LP     R D       Y +T R+ R+++ YYK+QE+LL+G+NE++T  E G   
Sbjct:    65 LDAFQLPSSTGGRHDGRTRFSRYFRTPRKERRVSEYYKKQERLLEGFNEMETIHENGFAS 124

Query:    58 GSLTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTXXXXXXXXXGF 117
             G  T+EEMK+LAK+ER+A++ SNA NLVLF+AKVYAS ESRS+AVIAST         GF
Sbjct:   125 GVPTEEEMKKLAKSERLAVHISNATNLVLFVAKVYASMESRSMAVIASTLDSLLDLLSGF 184

Query:   118 ILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERD 177
             ILWFTA AM+KPNQ+ YPIGK RMQPVGI+VFAS+MATLGLQ+L ESGR+L  ++    +
Sbjct:   185 ILWFTANAMRKPNQFHYPIGKRRMQPVGIIVFASVMATLGLQVLLESGRQLVAKSGIHMN 244

Query:   178 PEKEKWMIGIMVSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKF 237
               +EKWMIGIMVSVT+VK  LM+YCR F+NEIVRAYAQDH FDV+TNSIGLATA+LA+KF
Sbjct:   245 STEEKWMIGIMVSVTIVKFLLMLYCRGFQNEIVRAYAQDHLFDVVTNSIGLATAVLAVKF 304

Query:   238 YWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIET 297
             YWWIDP GAILIALYT+  W  TV+ENV SLIGR+AP ++LAKLT+LIWNHHE+IK+I+T
Sbjct:   305 YWWIDPTGAILIALYTIATWARTVLENVHSLIGRSAPPDFLAKLTFLIWNHHEQIKHIDT 364

Query:   298 VRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATHQLE 357
             VRAY FG  YFVE D+VLP +M L EAHNIGE+LQEKLEQL EVERAFVH+DF  TH+ E
Sbjct:   365 VRAYTFGSHYFVEVDIVLPEDMRLQEAHNIGETLQEKLEQLAEVERAFVHIDFEFTHRPE 424

Query:   358 HK 359
             HK
Sbjct:   425 HK 426




GO:0006812 "cation transport" evidence=IEA;ISS
GO:0008324 "cation transmembrane transporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0010224 "response to UV-B" evidence=RCA
TAIR|locus:2039697 MTP11 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095873 AT3G58060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285541 DDB_G0285541 "putative cation efflux pump" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00019841 R02F11.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G4MRQ3 MGG_04623 "Cation efflux family protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
WB|WBGene00019803 PDB1.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ASPGD|ASPL0000076507 AN5049 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000052398 AN10155 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00044481 ZK185.5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LDU0MTP7_ORYSJNo assigned EC number0.67030.98620.9156yesno
Q0WU02MTP10_ARATHNo assigned EC number0.68500.98890.8387yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
PtrMTP9
metal tolerance protein (404 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
COG0053304 COG0053, MMT1, Predicted Co/Zn/Cd cation transport 1e-43
pfam01545273 pfam01545, Cation_efflux, Cation efflux family 2e-41
TIGR01297268 TIGR01297, CDF, cation diffusion facilitator famil 3e-28
COG1230296 COG1230, CzcD, Co/Zn/Cd efflux system component [I 2e-10
PRK09509299 PRK09509, fieF, ferrous iron efflux protein F; Rev 7e-08
COG3965314 COG3965, COG3965, Predicted Co/Zn/Cd cation transp 0.002
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
 Score =  152 bits (387), Expect = 1e-43
 Identities = 74/293 (25%), Positives = 143/293 (48%), Gaps = 13/293 (4%)

Query: 63  EEMKQLAKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFT 122
            E ++L    R A+ +  A NL L L K+ A   + S+A++A  + SL D+++  I+   
Sbjct: 3   MEEERLKLVRRAALISL-AVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIG 61

Query: 123 AYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEK 182
                KP    +P G  + + +  ++ + ++   G +IL E+ + L +    E       
Sbjct: 62  LRISSKPPDRDHPYGHGKAETLASLIVSILIFAAGFEILLEAIKRLISPQPVEPPL---- 117

Query: 183 WMIGIMVSVTVVKLALMMYCRR----FKNEIVRAYAQDHFFDVITNSIGLATALLAIKF- 237
             +G+ +   V+K AL  Y RR      ++ + A A  H  DV+T S+ +   LL     
Sbjct: 118 LALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLT-SLAVLVGLLGSLLG 176

Query: 238 YWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIET 297
           + W+DP+ A+LI+LY +        E+V  L+      E L K+  +I +    +K +  
Sbjct: 177 WPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILS-VPGVKGVHD 235

Query: 298 VRAYNFGCQYFVEADVVLPAEMSLSEAHNIGESLQEKL-EQLPEVERAFVHVD 349
           +R    G + F++  + +  ++SL EAH I + +++++ ++ P+V    +HV+
Sbjct: 236 LRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVE 288


Length = 304

>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family Back     alignment and domain information
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter Back     alignment and domain information
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed Back     alignment and domain information
>gnl|CDD|226474 COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
KOG1485412 consensus Mitochondrial Fe2+ transporter MMT1 and 100.0
COG0053304 MMT1 Predicted Co/Zn/Cd cation transporters [Inorg 100.0
PRK09509299 fieF ferrous iron efflux protein F; Reviewed 100.0
PRK03557312 zinc transporter ZitB; Provisional 100.0
TIGR01297268 CDF cation diffusion facilitator family transporte 100.0
COG1230296 CzcD Co/Zn/Cd efflux system component [Inorganic i 100.0
PF01545284 Cation_efflux: Cation efflux family; InterPro: IPR 100.0
KOG1482379 consensus Zn2+ transporter [Inorganic ion transpor 99.97
KOG1484354 consensus Putative Zn2+ transporter MSC2 (cation d 99.97
KOG1483404 consensus Zn2+ transporter ZNT1 and related Cd2+/Z 99.96
COG3965314 Predicted Co/Zn/Cd cation transporters [Inorganic 99.95
KOG2802503 consensus Membrane protein HUEL (cation efflux sup 99.9
COG0053304 MMT1 Predicted Co/Zn/Cd cation transporters [Inorg 98.35
TIGR01297268 CDF cation diffusion facilitator family transporte 98.19
PRK09509299 fieF ferrous iron efflux protein F; Reviewed 98.18
PRK03557312 zinc transporter ZitB; Provisional 97.45
KOG1485412 consensus Mitochondrial Fe2+ transporter MMT1 and 96.63
PF01545284 Cation_efflux: Cation efflux family; InterPro: IPR 95.15
COG1230296 CzcD Co/Zn/Cd efflux system component [Inorganic i 93.81
PF03780108 Asp23: Asp23 family; InterPro: IPR005531 This entr 89.74
PF0744484 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR01 89.47
COG4956 356 Integral membrane protein (PIN domain superfamily) 86.79
COG1183234 PssA Phosphatidylserine synthase [Lipid metabolism 85.28
PF00873 1021 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010 85.16
TIGR02898158 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ 82.15
PF1453596 AMP-binding_C_2: AMP-binding enzyme C-terminal dom 81.55
KOG1484 354 consensus Putative Zn2+ transporter MSC2 (cation d 80.22
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=2.4e-62  Score=460.69  Aligned_cols=344  Identities=44%  Similarity=0.697  Sum_probs=310.5

Q ss_pred             hHHHHhhhhhchhHHHHHHHHHHHHhhhccchhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017950           18 GYYIKTLRRHRKIAGYYKRQEKLLKGYNEVDTFTELGILPGSLTQEEMKQLAKNERVAIYASNAANLVLFLAKVYASAES   97 (363)
Q Consensus        18 ~~~~~~~~~~~~~~~~y~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sl~~n~~l~v~k~~~~~~s   97 (363)
                      ...++...+.++..+||..|.++.+.+.+..+..+++......++++.+..+..++++.|+++++|++++++|+++++.+
T Consensus        59 ~~~~~~~~~e~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~l~~Nigl~vaK~~as~~s  138 (412)
T KOG1485|consen   59 HKSLRSPEKEDNVSEFYSSQKSLLQKFVEHSHTHEHGFVSEALELEKLQILKNAERRAAWIGLAANIGLAVAKVVASYLS  138 (412)
T ss_pred             ccccccchhhhccchHHHHHHHHhcccccccccccCCCCccccchhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33444555566677999999999999988888877766555444554444455678999999999999999999999999


Q ss_pred             chHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--
Q 017950           98 RSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPE--  175 (363)
Q Consensus        98 ~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~~~~~~~~~~~i~~esi~~l~~~~~~~--  175 (363)
                      ||+|++||++||+.|+++++++|++.+..+|+|+++||||++|+|+++.+.++++|..+|+++++++++++..|....  
T Consensus       139 gS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~iMa~agv~ii~sSl~~i~~~~~~~~~  218 (412)
T KOG1485|consen  139 GSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSVIMAMAGVQIIWSSLRLIVGPHAIGHH  218 (412)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhcccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998722111  


Q ss_pred             CCCc-----chHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 017950          176 RDPE-----KEKWMIGIMVSVTVVKLALMMYCRRFKN-EIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAILI  249 (363)
Q Consensus       176 ~~~~-----~~~~~~~i~~~~~~v~~~l~~~~~~~~s-~~l~a~~~~~~~D~~~~~~~v~~~~~~~~~~~~~D~i~aiii  249 (363)
                      .++.     ...|++++++....+++.++++|++.++ ..++|+|+|||+|+++|+++++++.++.+++||+||+||+++
T Consensus       219 ~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~~~~lDP~gailV  298 (412)
T KOG1485|consen  219 HNPSQLIFINALWLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYYYNYWLDPIGAILV  298 (412)
T ss_pred             cCchhhcccchhhhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcccchhhhhh
Confidence            1111     1227889999999999999999988765 889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEecCeEEEEEEEEeCCCCCHHHHHHHHH
Q 017950          250 ALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYFVEADVVLPAEMSLSEAHNIGE  329 (363)
Q Consensus       250 ~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G~~~~v~v~I~~~~~~~l~~~h~i~~  329 (363)
                      +.++++.|.++..+++..|+|+++|||.++++.+.+.++.+.++.++.+++|+.|..++|++|+++|++++++++|++.+
T Consensus       299 S~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E  378 (412)
T KOG1485|consen  299 STYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGE  378 (412)
T ss_pred             heehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccEEEEEEeeCCCCCCCCCCC
Q 017950          330 SLQEKLEQLPEVERAFVHVDFNATHQLEHKPK  361 (363)
Q Consensus       330 ~l~~~l~~~~~v~~v~Vhid~~~~~~~~h~~~  361 (363)
                      .+|++||.+|+|+|+|||+|++..|+|+|+.+
T Consensus       379 ~lq~~ie~l~ever~fvh~d~e~~hr~~~~~~  410 (412)
T KOG1485|consen  379 TLQKKIELLPEVERAFVHIDYEFLHRPHHEHL  410 (412)
T ss_pred             HHHHHHhhcchheeeeeecCccccCCchHhhc
Confidence            99999999999999999999999999999864



>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09509 fieF ferrous iron efflux protein F; Reviewed Back     alignment and domain information
>PRK03557 zinc transporter ZitB; Provisional Back     alignment and domain information
>TIGR01297 CDF cation diffusion facilitator family transporter Back     alignment and domain information
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt Back     alignment and domain information
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only] Back     alignment and domain information
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01297 CDF cation diffusion facilitator family transporter Back     alignment and domain information
>PRK09509 fieF ferrous iron efflux protein F; Reviewed Back     alignment and domain information
>PRK03557 zinc transporter ZitB; Provisional Back     alignment and domain information
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt Back     alignment and domain information
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family Back     alignment and domain information
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae Back     alignment and domain information
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only] Back     alignment and domain information
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism] Back     alignment and domain information
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors [] Back     alignment and domain information
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family Back     alignment and domain information
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B Back     alignment and domain information
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
3j1z_P306 Inward-facing Conformation Of The Zinc Transporter 2e-05
>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip Revealed By Cryo-electron Microscopy Length = 306 Back     alignment and structure

Iteration: 1

Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/281 (20%), Positives = 116/281 (41%), Gaps = 9/281 (3%) Query: 73 RVAIYASNAANLVLFLAKVYASAESRSLAVIASTXXXXXXXXXGFILWFTAYAMKKPNQY 132 ++A AS A L L K+ A S S +++AS I + P + Sbjct: 12 KLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADH 71 Query: 133 QYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVT 192 + G + +P+ + ++ + +LF G L + E + + V Sbjct: 72 DHRYGHGKAEPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVE----NATLGVVVSVVAI 127 Query: 193 VVKLALMMYCRR----FKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAIL 248 V+ LAL++ +R + +V A + + D+ N+ L +L+ +WW D + A+L Sbjct: 128 VLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQYGWWWADGLFAVL 187 Query: 249 IALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQYF 308 IA Y + ++ +L+ R + ++ LI + + +R G F Sbjct: 188 IACYIGQQAFDLGYRSIQALLDRELDEDTRQRIK-LIAKEDPRVLGLHDLRTRQAGKTVF 246 Query: 309 VEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVD 349 ++ + L +SL+EAH+I ++ +++ E +H D Sbjct: 247 IQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQD 287

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
3h90_A283 Ferrous-iron efflux pump FIEF; membrane protein, z 4e-44
2zzt_A107 Putative uncharacterized protein; cation diffusion 1e-11
3byp_A94 CZRB protein; membrane protein, zinc transporter, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Length = 283 Back     alignment and structure
 Score =  152 bits (387), Expect = 4e-44
 Identities = 48/282 (17%), Positives = 117/282 (41%), Gaps = 11/282 (3%)

Query: 73  RVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFI-LWFTAYAMKKPNQ 131
             A  A+ A   +L L K++A   + S++++A+ +DSL+D+ +    L    Y+++  + 
Sbjct: 3   SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADD 62

Query: 132 YQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSV 191
             +  G  + + +  +  +  ++   L +     + L +              + + +  
Sbjct: 63  -NHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPG----VGVIVTIVA 117

Query: 192 TVVKLALMMYC----RRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAI 247
            +  + L+ +     RR +++ VRA    +  DV+ N   L    L+   +   D + A+
Sbjct: 118 LICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFAL 177

Query: 248 LIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFGCQY 307
            I +Y + +      E V SL+ R  P E   ++  ++      +     +R    G   
Sbjct: 178 GIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTR 236

Query: 308 FVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVD 349
           F++  + +   + L +AH + + +++ + +        +H D
Sbjct: 237 FIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD 278


>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} Length = 107 Back     alignment and structure
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A Length = 94 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
3j1z_P306 YIIP, cation efflux family protein; zinc transport 100.0
3h90_A283 Ferrous-iron efflux pump FIEF; membrane protein, z 100.0
3byp_A94 CZRB protein; membrane protein, zinc transporter, 99.54
2zzt_A107 Putative uncharacterized protein; cation diffusion 99.47
3h90_A283 Ferrous-iron efflux pump FIEF; membrane protein, z 97.44
3j1z_P306 YIIP, cation efflux family protein; zinc transport 97.44
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis} Back     alignment and structure
Probab=100.00  E-value=3.4e-54  Score=406.87  Aligned_cols=279  Identities=22%  Similarity=0.285  Sum_probs=255.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHH
Q 017950           70 KNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVF  149 (363)
Q Consensus        70 ~~~~~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~  149 (363)
                      ...|++.++++++|++++++|+++|++|||+||+||++||++|+++.++++++.+.++||++.+|||||+|+|++++++.
T Consensus         9 ~~vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~   88 (306)
T 3j1z_P            9 FWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQ   88 (306)
T ss_dssp             CCSSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHH
Confidence            44578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHhHHHhhHHHHHHH
Q 017950          150 ASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYCRR----FKNEIVRAYAQDHFFDVITNS  225 (363)
Q Consensus       150 ~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~~~  225 (363)
                      |++++++++++++||++++++|++++    ...+++++++++++++..+++++++    .+|+.+++++.|+++|+++| 
T Consensus        89 ~~~l~~~~~~i~~eai~~l~~p~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s-  163 (306)
T 3j1z_P           89 SAFIMGSAFLLLFYGGERLLNPSPVE----NATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLN-  163 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTTCCGG----GTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHhhhheecCCCcc----ccccchhhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhh-
Confidence            99999999999999999999987642    2355677888889999999888865    46899999999999999997 


Q ss_pred             HHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCccccceeEEEEec
Q 017950          226 IGLATALLAIKF-YWWIDPIGAILIALYTMGNWGNTVMENVWSLIGRTAPAEYLAKLTYLIWNHHEEIKYIETVRAYNFG  304 (363)
Q Consensus       226 ~~v~~~~~~~~~-~~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~~V~~v~~v~~~~~G  304 (363)
                      ++++++.++.++ +||+||++++++++++++.++++++++...|+|+++|++..++|++.+. ..|+|.++|++|+|+.|
T Consensus       164 ~~vli~~~~~~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~-~~~~V~~vh~l~~~~~G  242 (306)
T 3j1z_P          164 AAVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAK-EDPRVLGLHDLRTRQAG  242 (306)
T ss_dssp             TTCCCTTSSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HSTTBCCCCCBCCEEET
T ss_pred             hHHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHh-cCCCcceeeeEEEEEEC
Confidence            566556555544 6899999999999999999999999999999999999999999999996 58999999999999999


Q ss_pred             CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEeeCCCC
Q 017950          305 CQYFVEADVVLPAEMSLSEAHNIGESLQEKLEQLPEVERAFVHVDFNATH  354 (363)
Q Consensus       305 ~~~~v~v~I~~~~~~~l~~~h~i~~~l~~~l~~~~~v~~v~Vhid~~~~~  354 (363)
                      +++++++||++|+++|++|+|+|++++|++|++.+++.+++||+||....
T Consensus       243 ~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v~IhveP~~~e  292 (306)
T 3j1z_P          243 KTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVE  292 (306)
T ss_dssp             TEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTCEEEECCEETTSC
T ss_pred             CcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCC
Confidence            99999999999999999999999999999998766778999999998654



>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Back     alignment and structure
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A Back     alignment and structure
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} Back     alignment and structure
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Back     alignment and structure
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 363
d2qfia2204 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF { 6e-31
d2qfia182 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF 2e-18
d3bypa182 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB { 8e-15
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]
 Score =  114 bits (286), Expect = 6e-31
 Identities = 37/203 (18%), Positives = 81/203 (39%)

Query: 69  AKNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKK 128
            +    A  A+ A   +L L K++A   + S++++A+ +DSL+D+ +            +
Sbjct: 2   GRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQ 61

Query: 129 PNQYQYPIGKNRMQPVGIVVFASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIM 188
           P    +  G  + + +  +  +  ++   L +     + L +              I  +
Sbjct: 62  PADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVAL 121

Query: 189 VSVTVVKLALMMYCRRFKNEIVRAYAQDHFFDVITNSIGLATALLAIKFYWWIDPIGAIL 248
           +   ++        RR +++ VRA    +  DV+ N   L    L+   +   D + A+ 
Sbjct: 122 ICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALG 181

Query: 249 IALYTMGNWGNTVMENVWSLIGR 271
           I +Y + +      E V SL+ R
Sbjct: 182 IGIYILYSALRMGYEAVQSLLDR 204


>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]} Length = 82 Back     information, alignment and structure
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]} Length = 82 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
d2qfia2204 Ferrous-iron efflux pump FieF {Escherichia coli [T 99.96
d3bypa182 Putative Zinc transporter CzrB {Thermus thermophil 99.58
d2qfia182 Ferrous-iron efflux pump FieF (YiiP) {Escherichia 99.49
d2qfia2204 Ferrous-iron efflux pump FieF {Escherichia coli [T 91.89
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]
Probab=99.96  E-value=3.4e-36  Score=265.83  Aligned_cols=197  Identities=19%  Similarity=0.208  Sum_probs=172.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhHHHhHhhHHHHHHHHHHHHHhcCCCCCCCCCcchhHhhhHHHHH
Q 017950           70 KNERVAIYASNAANLVLFLAKVYASAESRSLAVIASTLDSLLDLLSGFILWFTAYAMKKPNQYQYPIGKNRMQPVGIVVF  149 (363)
Q Consensus        70 ~~~~~~l~~sl~~n~~l~v~k~~~~~~s~S~al~ada~~s~~D~~s~~i~l~~~~~~~r~~~~~~P~G~~r~E~l~~li~  149 (363)
                      |..+|+.++++++|++++++|+++|++|||++++||++|++.|+++.++.+++.+.++||++++|||||+|+|++++++.
T Consensus         3 r~~~r~~~~~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~   82 (204)
T d2qfia2           3 RLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQ   82 (204)
T ss_dssp             SSSSTTSHHHHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTTSSSSCSTTSSCSCCTHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccCCcchhHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH----HHhCCHHHHHhHHHhhHHHHHHH
Q 017950          150 ASIMATLGLQILFESGRELFTEAQPERDPEKEKWMIGIMVSVTVVKLALMMYC----RRFKNEIVRAYAQDHFFDVITNS  225 (363)
Q Consensus       150 ~~~~~~~~~~i~~esi~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~l~~~~----~~~~s~~l~a~~~~~~~D~~~~~  225 (363)
                      |++++++++.+++|+++++++|++++    +..+++++++++++++..++.++    ++.+|+.++++++|+++|+++| 
T Consensus        83 ~~~l~~~~~~~~~~si~~l~~~~~~~----~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~s~~~~a~~~~~~~D~~~s-  157 (204)
T d2qfia2          83 SMFISGSALFLFLTGIQHLISPTPMT----DPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMN-  157 (204)
T ss_dssp             TTTTSSSTTGGGSSCTTSSTTTSSSS----TTTSCCCCCGGGSSCGGGGTTTHHHHGGGCCSTTSGGGGGGHHHHTCCS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH-
Confidence            99999999999999999999887642    23444555556666666665554    4567889999999999999997 


Q ss_pred             HHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017950          226 IGLATALLAIKF-YWWIDPIGAILIALYTMGNWGNTVMENVWSLIGR  271 (363)
Q Consensus       226 ~~v~~~~~~~~~-~~~~D~i~aiii~~~i~~~~~~~~~e~~~~L~g~  271 (363)
                      ++++.+.++.++ +||+||++++++++++++.++++++|+.+.|+||
T Consensus       158 ~~vii~~~~~~~~~~~~D~i~aiii~~~i~~~~~~~~~~~~~~Lld~  204 (204)
T d2qfia2         158 GAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDR  204 (204)
T ss_dssp             STTCCCTTSSCSSTTSSSSSSHHHHTTTTTTTTTTHHHHTGGGSSCC
T ss_pred             HHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            555555444444 6899999999999999999999999999999986



>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure