Citrus Sinensis ID: 017961
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 363 | ||||||
| 297742494 | 361 | unnamed protein product [Vitis vinifera] | 0.953 | 0.958 | 0.843 | 1e-171 | |
| 359473999 | 371 | PREDICTED: transmembrane protein 120 hom | 0.933 | 0.913 | 0.845 | 1e-169 | |
| 449456299 | 365 | PREDICTED: transmembrane protein 120 hom | 0.953 | 0.947 | 0.837 | 1e-162 | |
| 359806628 | 354 | uncharacterized protein LOC100789483 [Gl | 0.955 | 0.980 | 0.787 | 1e-162 | |
| 356576897 | 354 | PREDICTED: transmembrane protein 120 hom | 0.936 | 0.960 | 0.797 | 1e-161 | |
| 255646863 | 354 | unknown [Glycine max] | 0.936 | 0.960 | 0.794 | 1e-161 | |
| 255555863 | 360 | conserved hypothetical protein [Ricinus | 0.928 | 0.936 | 0.847 | 1e-159 | |
| 224117700 | 363 | predicted protein [Populus trichocarpa] | 0.909 | 0.909 | 0.815 | 1e-159 | |
| 224056717 | 345 | predicted protein [Populus trichocarpa] | 0.914 | 0.962 | 0.809 | 1e-156 | |
| 18413335 | 347 | TMPIT-like protein [Arabidopsis thaliana | 0.944 | 0.988 | 0.757 | 1e-150 |
| >gi|297742494|emb|CBI34643.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 296/351 (84%), Positives = 320/351 (91%), Gaps = 5/351 (1%)
Query: 13 EEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNL 72
+E+V VVE+AKELQ+AA++ I+RTS EEQ+LR+ ALSLDSNI RLRSL+ S N +
Sbjct: 15 DEQVSGVVEQAKELQDAASSHISRTSVEEQALRKSALSLDSNIHRLRSLIDSL--HRNKI 72
Query: 73 LRFDSKLADKQLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLK 132
L D KLADK L+EDLQ+A+C++ DGDAS+FLP AQG F++MF+GPINV A+RKDVQLK
Sbjct: 73 L--DPKLADK-LDEDLQRARCILVDGDASSFLPGNAQGGFLRMFLGPINVHATRKDVQLK 129
Query: 133 VKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENI 192
VKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLP FPVQLYQAWLLFLYTGLALRENI
Sbjct: 130 VKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPTFPVQLYQAWLLFLYTGLALRENI 189
Query: 193 LRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLL 252
LR+NGSDIRPWWIYHHYCAM+MALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLL
Sbjct: 190 LRVNGSDIRPWWIYHHYCAMIMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLL 249
Query: 253 QNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTA 312
QNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTA
Sbjct: 250 QNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTA 309
Query: 313 LVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMKKSKSKPEF 363
VGVV EWQV FCG LLVLMAVGNF NTVQTLM KSRFKAKMK+SKSK E
Sbjct: 310 FVGVVSEWQVVFCGVLLVLMAVGNFANTVQTLMVKSRFKAKMKRSKSKQEL 360
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473999|ref|XP_002276903.2| PREDICTED: transmembrane protein 120 homolog isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449456299|ref|XP_004145887.1| PREDICTED: transmembrane protein 120 homolog [Cucumis sativus] gi|449524416|ref|XP_004169219.1| PREDICTED: transmembrane protein 120 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|359806628|ref|NP_001241531.1| uncharacterized protein LOC100789483 [Glycine max] gi|255639685|gb|ACU20136.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356576897|ref|XP_003556566.1| PREDICTED: transmembrane protein 120 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255646863|gb|ACU23902.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255555863|ref|XP_002518967.1| conserved hypothetical protein [Ricinus communis] gi|223541954|gb|EEF43500.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224117700|ref|XP_002317646.1| predicted protein [Populus trichocarpa] gi|222860711|gb|EEE98258.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224056717|ref|XP_002298988.1| predicted protein [Populus trichocarpa] gi|222846246|gb|EEE83793.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|18413335|ref|NP_567356.1| TMPIT-like protein [Arabidopsis thaliana] gi|42572865|ref|NP_974529.1| TMPIT-like protein [Arabidopsis thaliana] gi|16648995|gb|AAL24349.1| putative protein [Arabidopsis thaliana] gi|20259956|gb|AAM13325.1| putative protein [Arabidopsis thaliana] gi|332657481|gb|AEE82881.1| TMPIT-like protein [Arabidopsis thaliana] gi|332657482|gb|AEE82882.1| TMPIT-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 363 | ||||||
| TAIR|locus:2127701 | 347 | AT4G10430 "AT4G10430" [Arabido | 0.859 | 0.899 | 0.703 | 1.6e-118 | |
| TAIR|locus:2196668 | 347 | AT1G33230 "AT1G33230" [Arabido | 0.859 | 0.899 | 0.690 | 3.4e-116 | |
| DICTYBASE|DDB_G0288699 | 368 | tmem120 "TMPIT-like family pro | 0.674 | 0.665 | 0.314 | 7.1e-29 | |
| UNIPROTKB|Q05B45 | 343 | TMEM120A "Transmembrane protei | 0.696 | 0.737 | 0.302 | 1.6e-24 | |
| MGI|MGI:2686991 | 343 | Tmem120a "transmembrane protei | 0.696 | 0.737 | 0.306 | 1.6e-24 | |
| RGD|1311474 | 343 | Tmem120a "transmembrane protei | 0.696 | 0.737 | 0.306 | 1.6e-24 | |
| UNIPROTKB|F1P7N5 | 408 | F1P7N5 "Uncharacterized protei | 0.685 | 0.610 | 0.307 | 2.6e-24 | |
| UNIPROTKB|Q9BXJ8 | 343 | TMEM120A "Transmembrane protei | 0.685 | 0.725 | 0.307 | 2.6e-24 | |
| ZFIN|ZDB-GENE-041010-17 | 337 | zgc:103681 "zgc:103681" [Danio | 0.680 | 0.732 | 0.288 | 3.4e-22 | |
| ZFIN|ZDB-GENE-070424-21 | 341 | tmem120a "transmembrane protei | 0.683 | 0.727 | 0.278 | 9e-22 |
| TAIR|locus:2127701 AT4G10430 "AT4G10430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
Identities = 225/320 (70%), Positives = 252/320 (78%)
Query: 26 LQEAAATLINRTSSEEQSLRQRALSLDXXXXXXXXXXXXXXXXXXXXXRFDSKLADKQLE 85
L ++AA+ I+ +S +E SLRQ+A ++D D KL +K LE
Sbjct: 17 LHDSAASFISSSSQQELSLRQKASAVDSSIRRLHSTIVSNK-------NLDPKLVEK-LE 68
Query: 86 EDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTA 145
EDL +A+C++ DG+ S+FLPSK QG FV+MF GP+NVRA RKDVQLKVKEEYN YRD+TA
Sbjct: 69 EDLHRARCMLVDGETSSFLPSKPQGRFVRMFCGPVNVRALRKDVQLKVKEEYNRYRDKTA 128
Query: 146 XXXXXXXXXXXXXRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWI 205
RS+ W GCLPAFPVQLY+AWLLFLY GLA+RENILR NGSDIRPWW+
Sbjct: 129 LLFLFFPATLLILRSYYWGGCLPAFPVQLYEAWLLFLYAGLAMRENILRANGSDIRPWWL 188
Query: 206 YHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRI 265
YHHYCAM MALVSLTWEIKGQPNC QKQRGV LFLQWAMMQGVAMLLQNRYQRQRLYTRI
Sbjct: 189 YHHYCAMAMALVSLTWEIKGQPNCVQKQRGVHLFLQWAMMQGVAMLLQNRYQRQRLYTRI 248
Query: 266 ALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFC 325
ALGKAKRMDVVWGETAGVDGQLWLLCPILFILQ FEAYVGLLLL+ + GVV EWQV C
Sbjct: 249 ALGKAKRMDVVWGETAGVDGQLWLLCPILFILQVFEAYVGLLLLRKTVTGVVNEWQVMVC 308
Query: 326 GALLVLMAVGNFINTVQTLM 345
G LLV+MAVGNFINTV+TLM
Sbjct: 309 GILLVVMAVGNFINTVETLM 328
|
|
| TAIR|locus:2196668 AT1G33230 "AT1G33230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0288699 tmem120 "TMPIT-like family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q05B45 TMEM120A "Transmembrane protein 120A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2686991 Tmem120a "transmembrane protein 120A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1311474 Tmem120a "transmembrane protein 120A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P7N5 F1P7N5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9BXJ8 TMEM120A "Transmembrane protein 120A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-041010-17 zgc:103681 "zgc:103681" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-070424-21 tmem120a "transmembrane protein 120A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00000451001 | SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (361 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 363 | |||
| pfam07851 | 330 | pfam07851, TMPIT, TMPIT-like protein | 1e-110 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.004 |
| >gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein | Back alignment and domain information |
|---|
Score = 325 bits (836), Expect = e-110
Identities = 106/344 (30%), Positives = 171/344 (49%), Gaps = 17/344 (4%)
Query: 13 EEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNL 72
EEE + + +E ++LQE + E+ Q ++ +RL+ L+ S +L
Sbjct: 3 EEEWKELEKEFQQLQETHRLYKQKLEEVEKLQEQCTSAIARQRKRLKQLIVSLKKLKKSL 62
Query: 73 LRFDSKLADKQLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLK 132
DS+L + QLEE +++ + +D ++ FLP K G ++++ +G +NV K +
Sbjct: 63 TPEDSELVE-QLEEQIKERKNQFFDMES--FLPKK-NGLYLRLVLGNVNVTLLSKQAKFA 118
Query: 133 VKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENI 192
K+EY ++ ++ LL T L L ++ L+ L++ Y L +RE+I
Sbjct: 119 YKDEYEKFKLYLTVILLLLAFTCLFLLNY-------RVLDALFNFLLVWYYCTLTIRESI 171
Query: 193 LRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLL 252
L +NGS I+ WW++HHY + ++ V LTW P+ Q FL ++M Q + L
Sbjct: 172 LIVNGSRIKGWWVFHHYISTALSGVMLTW-----PDGEMYQLFRNQFLYFSMYQSLVQFL 226
Query: 253 QNRYQRQRLYTRIALGKAKRMDVVW-GETAGVDGQLWLLCPILFILQGFEAYVGLLLLKT 311
QN YQ LY ALG+ MD+ G + + L L P LF Q F+ Y L +
Sbjct: 227 QNYYQSGCLYRLRALGERHNMDLTVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAWTLFRL 286
Query: 312 ALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMK 355
A EWQV CG L +++ +GNF T+ + K R +AKMK
Sbjct: 287 ARHPECKEWQVFVCGLLFLVLFLGNFFTTLMVVYQKFRNQAKMK 330
|
A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. Length = 330 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 363 | |||
| PF07851 | 330 | TMPIT: TMPIT-like protein; InterPro: IPR012926 A n | 100.0 | |
| KOG4758 | 220 | consensus Predicted membrane protein [General func | 100.0 | |
| KOG4758 | 220 | consensus Predicted membrane protein [General func | 99.64 | |
| PF07851 | 330 | TMPIT: TMPIT-like protein; InterPro: IPR012926 A n | 94.38 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 83.47 |
| >PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-125 Score=920.74 Aligned_cols=313 Identities=34% Similarity=0.600 Sum_probs=294.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHHHH
Q 017961 9 EKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDL 88 (363)
Q Consensus 9 ~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~~i 88 (363)
.++...+..+|+||+.++|+.|+++|+||++ |+++++++|++|+++.+. | +++.++ +++++|
T Consensus 16 Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkk-------rLk~L~~sLk~~~~~~~~----e------~~~~i~-~L~~~I 77 (330)
T PF07851_consen 16 LQETHRSYKQKLEELSKLQDKCSSSISHQKK-------RLKELKKSLKRCKKSLSA----E------ERELIE-KLEEDI 77 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccCCCh----h------HHHHHH-HHHHHH
Confidence 4556678899999999999999999999977 999999999999854222 2 236677 699999
Q ss_pred HHHhhhccccchhccCCCCCCCccceeecccceeeeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHH-HHhhcCCC
Q 017961 89 QKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILR-SWIWDGCL 167 (363)
Q Consensus 89 ~~~~~~~~~~dme~~LP~k~nG~yL~l~LG~vNvtll~k~~kf~yKdEYEkFKl~~t~i~ll~~~~ll~~~-~~~~~~~~ 167 (363)
++|+++++ |||++||+| ||+||+++||||||+++++++||+|||||||||+++|++++++|++|+++. +++.
T Consensus 78 k~r~~~l~--DmEa~LPkk-NGlyL~liLGnVNVsll~k~~kf~yKdEYEkFKl~~tii~l~~~~~~~~~~~~r~~---- 150 (330)
T PF07851_consen 78 KERRCQLF--DMEAFLPKK-NGLYLRLILGNVNVSLLSKQAKFKYKDEYEKFKLYLTIILLLFAVALLFLLNYRVL---- 150 (330)
T ss_pred HHHHhhHH--HHHhhCCCC-CCcccceecccccceecccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcChHHH----
Confidence 99999999 999999985 999999999999999999999999999999999999999999999887754 4444
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHhhhhhhcccccCCCchhhhhhhhhHHHHHHHHHH
Q 017961 168 PAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQG 247 (363)
Q Consensus 168 ~~~~~~~~~flLvwyYcTLtiREsIL~vNGSrIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~f~~qFl~fs~~qs 247 (363)
+++|+|||||||||||||||||+||||||||||+.|||+||++||||||| |||+.||+||+||+.||+|||
T Consensus 151 ----d~~~~f~lvwyY~tLtiRE~IL~~NGS~Ik~WW~~HHy~s~~~s~v~Ltw-----p~~~~~~~fr~~fl~f~~~~~ 221 (330)
T PF07851_consen 151 ----DQLFNFLLVWYYCTLTIRESILIVNGSRIKGWWVFHHYISTFLSGVMLTW-----PDGEAYQKFRPQFLLFSLYQS 221 (330)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHhccccC-----CCcHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999 799999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHhccccccccc-ccCccccccchHhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q 017961 248 VAMLLQNRYQRQRLYTRIALGKAKRMDVV-WGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCG 326 (363)
Q Consensus 248 ~Vq~lQ~rYQrgcLYrl~ALGe~~~MDvt-~g~~~~v~ggLtfLlPfLf~g~~fQlYna~~L~~~~~~~~~~EWQV~~~~ 326 (363)
+||+||||||||||||||||||||+|||| +|++|||.||||||+||||+||+||+||||+||+++++|+|+||||+|||
T Consensus 222 ~vq~lQ~~YQ~~~Ly~l~AlG~~~~mdvt~eG~~s~~~~~L~fLlPfLf~~~~~q~yn~~~l~~~~~~~~~~ewqv~~~~ 301 (330)
T PF07851_consen 222 VVQFLQYRYQRGCLYRLRALGKRHNMDVTVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAYTLFELSYHPECREWQVFVCG 301 (330)
T ss_pred HHHHHHHHHHHhHHHHHHHhccCccceeeecccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHH
Confidence 99999999999999999999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 017961 327 ALLVLMAVGNFINTVQTLMTKSRFKAKMK 355 (363)
Q Consensus 327 llf~il~~GNf~TTl~vv~~K~~~~~~~~ 355 (363)
++|++||+|||+||++|+++|+++++|||
T Consensus 302 ~~f~~l~~gN~~tt~~v~~~K~~~~~~~~ 330 (330)
T PF07851_consen 302 LLFLILFLGNFFTTLKVVHQKLKKKAKMK 330 (330)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999986
|
; GO: 0016021 integral to membrane |
| >KOG4758 consensus Predicted membrane protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4758 consensus Predicted membrane protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 363 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-08 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 3e-08
Identities = 57/379 (15%), Positives = 117/379 (30%), Gaps = 107/379 (28%)
Query: 8 CEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSIS 67
K +EE V++ VEE L+ L++ +E+ RQ ++ I + R L++
Sbjct: 72 LSK-QEEMVQKFVEEV--LRINYKFLMSPIKTEQ---RQPSMMTRMYIEQ-RDRLYNDNQ 124
Query: 68 --STNNLLRFDSKLADKQLEEDLQKAQCLIYDGD---------ASAFLPSKAQGAFV-KM 115
+ N+ R L +Q +L+ A+ ++ DG L K Q K+
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 116 F---IGPIN------------------VRASRKDVQLKVKEEYNSYRDRTALLFLL--FP 152
F + N SR D +K +S + L +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 153 STLLILR----SWIWDGCLPAFPVQ--------------------LYQAWLLFLYTGLAL 188
+ LL+L + W+ AF + L L
Sbjct: 245 NCLLVLLNVQNAKAWN----AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 189 RE------NILRINGSDIRPWWIYHH--YCAMLMALVS---LTWEIKGQPNCAQKQRGVQ 237
E L D+ + + +++ + TW+ NC + ++
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 238 LFLQWAMMQGVAMLLQNRYQRQRLYTRIALG------KAKRMDVVWGETAGVDGQLWLLC 291
L + + ++++ R+++ + ++W + D +
Sbjct: 361 SSLN----------VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV---- 406
Query: 292 PILFILQGFEAYVGLLLLK 310
++ Y L+ K
Sbjct: 407 ----VVNKLHKY--SLVEK 419
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00