Citrus Sinensis ID: 017961


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MDEKRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMKKSKSKPEF
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccEEEccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccEEEEEcccHcHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
mdekrsncekvEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDLQKAQCLiydgdasaflpskaQGAFVKMFIGpinvrasrkDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWiwdgclpafpVQLYQAWLLFLYTGLALRENIlringsdirpwwIYHHYCAMLMALVSLTWeikgqpncaqkQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGkakrmdvvwgetagvdgqlWLLCPILFILQGFEAYVGLLLLKTALvgvvpewqVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKmkkskskpef
mdekrsncekveeeeVERVVEEAKELQEAAATlinrtsseeqslRQRALSLDSNIRRLRSLLhssisstnnllRFDSKLADKQLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPinvrasrkdvqLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIalgkakrmDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMtksrfkakmkkskskpef
MDEKRSNCekveeeevervveeakeLQEAAATLINRTSSEEQSLRQRALSLDsnirrlrsllhssisstnnllRFDSKLADKQLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTAllfllfpstllilRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTksrfkakmkkskskPEF
**************************************************************************************DLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMT*****************
**************EVERVVEEAKELQEAAATLI***********************************************************************SKAQGAFVKMFIGPINVRASRKD**LKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLM******************
**********************AKELQEAAATLINR***********ALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKS***************
*****SNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKM*********
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MDEKRSNCxxxxxxxxxxxxxxxxxxxxxxxxxxxxTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMKKSKSKPEF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
Q54IK2368 Transmembrane protein 120 yes no 0.573 0.565 0.337 1e-23
A6QPF8339 Transmembrane protein 120 yes no 0.840 0.899 0.265 2e-22
A0PK00339 Transmembrane protein 120 yes no 0.856 0.917 0.254 2e-22
Q3TA38339 Transmembrane protein 120 yes no 0.909 0.973 0.257 3e-22
A3KNK1341 Transmembrane protein 120 no no 0.661 0.703 0.297 4e-20
Q9U1M2387 Transmembrane protein 120 yes no 0.829 0.777 0.260 1e-19
A1L2R7336 Transmembrane protein 120 N/A no 0.639 0.690 0.295 1e-18
Q1LY80337 Transmembrane protein 120 no no 0.865 0.931 0.255 1e-18
Q5FWV6336 Transmembrane protein 120 yes no 0.639 0.690 0.299 1e-18
Q8C1E7343 Transmembrane protein 120 no no 0.663 0.702 0.270 4e-18
>sp|Q54IK2|TM120_DICDI Transmembrane protein 120 homolog OS=Dictyostelium discoideum GN=tmem120 PE=3 SV=1 Back     alignment and function desciption
 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 122/243 (50%), Gaps = 35/243 (14%)

Query: 102 AFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRT-------ALLFLLFPST 154
           +F P      FV++F+G +NV+  R++ + ++K+EY  ++ +T        +L LL+P +
Sbjct: 119 SFTPETG-SIFVRLFLGQVNVKHMRENEKFRLKQEYEKFKKKTNPQFILFVVLLLLYPQS 177

Query: 155 LLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLM 214
             +  SW              Q WLL+ Y  LALRENIL +NGS I+PWWI HHY ++  
Sbjct: 178 SFVTTSW--------------QIWLLYYYITLALRENILLVNGSSIKPWWIMHHYLSIAG 223

Query: 215 ALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMD 274
           +L +L + +    +    Q  V  F   +  QG+  +L NRYQ+ RLY  +A+GKA  +D
Sbjct: 224 SLTNLLFPLSESFSYFLPQ--VTYF---SGCQGLVQILTNRYQQGRLYKLVAMGKANIID 278

Query: 275 VV-----WGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTAL--VGVVPEWQVSFCGA 327
           V      WG   G       L P L  +Q F+ Y        A    G V EWQV  CG 
Sbjct: 279 VTGESEGWGNDPGWTPSALFLFPFLLFVQFFQLYNSFSFFAFAYQRSGYV-EWQVFSCGF 337

Query: 328 LLV 330
           + +
Sbjct: 338 IFL 340





Dictyostelium discoideum (taxid: 44689)
>sp|A6QPF8|T120B_BOVIN Transmembrane protein 120B OS=Bos taurus GN=TMEM120B PE=2 SV=1 Back     alignment and function description
>sp|A0PK00|T120B_HUMAN Transmembrane protein 120B OS=Homo sapiens GN=TMEM120B PE=2 SV=1 Back     alignment and function description
>sp|Q3TA38|T120B_MOUSE Transmembrane protein 120B OS=Mus musculus GN=Tmem120b PE=2 SV=1 Back     alignment and function description
>sp|A3KNK1|T120A_DANRE Transmembrane protein 120A OS=Danio rerio GN=tmem120a PE=2 SV=1 Back     alignment and function description
>sp|Q9U1M2|TM120_DROME Transmembrane protein 120 homolog OS=Drosophila melanogaster GN=CG32795 PE=1 SV=1 Back     alignment and function description
>sp|A1L2R7|T120A_XENLA Transmembrane protein 120A OS=Xenopus laevis GN=tmem120a PE=2 SV=1 Back     alignment and function description
>sp|Q1LY80|T120B_DANRE Transmembrane protein 120B OS=Danio rerio GN=tmem120b PE=2 SV=1 Back     alignment and function description
>sp|Q5FWV6|T120A_XENTR Transmembrane protein 120A OS=Xenopus tropicalis GN=tmem120a PE=2 SV=2 Back     alignment and function description
>sp|Q8C1E7|T120A_MOUSE Transmembrane protein 120A OS=Mus musculus GN=Tmem120a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
297742494361 unnamed protein product [Vitis vinifera] 0.953 0.958 0.843 1e-171
359473999371 PREDICTED: transmembrane protein 120 hom 0.933 0.913 0.845 1e-169
449456299365 PREDICTED: transmembrane protein 120 hom 0.953 0.947 0.837 1e-162
359806628354 uncharacterized protein LOC100789483 [Gl 0.955 0.980 0.787 1e-162
356576897354 PREDICTED: transmembrane protein 120 hom 0.936 0.960 0.797 1e-161
255646863354 unknown [Glycine max] 0.936 0.960 0.794 1e-161
255555863360 conserved hypothetical protein [Ricinus 0.928 0.936 0.847 1e-159
224117700363 predicted protein [Populus trichocarpa] 0.909 0.909 0.815 1e-159
224056717345 predicted protein [Populus trichocarpa] 0.914 0.962 0.809 1e-156
18413335347 TMPIT-like protein [Arabidopsis thaliana 0.944 0.988 0.757 1e-150
>gi|297742494|emb|CBI34643.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 296/351 (84%), Positives = 320/351 (91%), Gaps = 5/351 (1%)

Query: 13  EEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNL 72
           +E+V  VVE+AKELQ+AA++ I+RTS EEQ+LR+ ALSLDSNI RLRSL+ S     N +
Sbjct: 15  DEQVSGVVEQAKELQDAASSHISRTSVEEQALRKSALSLDSNIHRLRSLIDSL--HRNKI 72

Query: 73  LRFDSKLADKQLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLK 132
           L  D KLADK L+EDLQ+A+C++ DGDAS+FLP  AQG F++MF+GPINV A+RKDVQLK
Sbjct: 73  L--DPKLADK-LDEDLQRARCILVDGDASSFLPGNAQGGFLRMFLGPINVHATRKDVQLK 129

Query: 133 VKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENI 192
           VKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLP FPVQLYQAWLLFLYTGLALRENI
Sbjct: 130 VKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPTFPVQLYQAWLLFLYTGLALRENI 189

Query: 193 LRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLL 252
           LR+NGSDIRPWWIYHHYCAM+MALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLL
Sbjct: 190 LRVNGSDIRPWWIYHHYCAMIMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLL 249

Query: 253 QNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTA 312
           QNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTA
Sbjct: 250 QNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTA 309

Query: 313 LVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMKKSKSKPEF 363
            VGVV EWQV FCG LLVLMAVGNF NTVQTLM KSRFKAKMK+SKSK E 
Sbjct: 310 FVGVVSEWQVVFCGVLLVLMAVGNFANTVQTLMVKSRFKAKMKRSKSKQEL 360




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473999|ref|XP_002276903.2| PREDICTED: transmembrane protein 120 homolog isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449456299|ref|XP_004145887.1| PREDICTED: transmembrane protein 120 homolog [Cucumis sativus] gi|449524416|ref|XP_004169219.1| PREDICTED: transmembrane protein 120 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|359806628|ref|NP_001241531.1| uncharacterized protein LOC100789483 [Glycine max] gi|255639685|gb|ACU20136.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356576897|ref|XP_003556566.1| PREDICTED: transmembrane protein 120 homolog [Glycine max] Back     alignment and taxonomy information
>gi|255646863|gb|ACU23902.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255555863|ref|XP_002518967.1| conserved hypothetical protein [Ricinus communis] gi|223541954|gb|EEF43500.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224117700|ref|XP_002317646.1| predicted protein [Populus trichocarpa] gi|222860711|gb|EEE98258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056717|ref|XP_002298988.1| predicted protein [Populus trichocarpa] gi|222846246|gb|EEE83793.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18413335|ref|NP_567356.1| TMPIT-like protein [Arabidopsis thaliana] gi|42572865|ref|NP_974529.1| TMPIT-like protein [Arabidopsis thaliana] gi|16648995|gb|AAL24349.1| putative protein [Arabidopsis thaliana] gi|20259956|gb|AAM13325.1| putative protein [Arabidopsis thaliana] gi|332657481|gb|AEE82881.1| TMPIT-like protein [Arabidopsis thaliana] gi|332657482|gb|AEE82882.1| TMPIT-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
TAIR|locus:2127701347 AT4G10430 "AT4G10430" [Arabido 0.859 0.899 0.703 1.6e-118
TAIR|locus:2196668347 AT1G33230 "AT1G33230" [Arabido 0.859 0.899 0.690 3.4e-116
DICTYBASE|DDB_G0288699368 tmem120 "TMPIT-like family pro 0.674 0.665 0.314 7.1e-29
UNIPROTKB|Q05B45343 TMEM120A "Transmembrane protei 0.696 0.737 0.302 1.6e-24
MGI|MGI:2686991343 Tmem120a "transmembrane protei 0.696 0.737 0.306 1.6e-24
RGD|1311474343 Tmem120a "transmembrane protei 0.696 0.737 0.306 1.6e-24
UNIPROTKB|F1P7N5408 F1P7N5 "Uncharacterized protei 0.685 0.610 0.307 2.6e-24
UNIPROTKB|Q9BXJ8343 TMEM120A "Transmembrane protei 0.685 0.725 0.307 2.6e-24
ZFIN|ZDB-GENE-041010-17337 zgc:103681 "zgc:103681" [Danio 0.680 0.732 0.288 3.4e-22
ZFIN|ZDB-GENE-070424-21341 tmem120a "transmembrane protei 0.683 0.727 0.278 9e-22
TAIR|locus:2127701 AT4G10430 "AT4G10430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
 Identities = 225/320 (70%), Positives = 252/320 (78%)

Query:    26 LQEAAATLINRTSSEEQSLRQRALSLDXXXXXXXXXXXXXXXXXXXXXRFDSKLADKQLE 85
             L ++AA+ I+ +S +E SLRQ+A ++D                       D KL +K LE
Sbjct:    17 LHDSAASFISSSSQQELSLRQKASAVDSSIRRLHSTIVSNK-------NLDPKLVEK-LE 68

Query:    86 EDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTA 145
             EDL +A+C++ DG+ S+FLPSK QG FV+MF GP+NVRA RKDVQLKVKEEYN YRD+TA
Sbjct:    69 EDLHRARCMLVDGETSSFLPSKPQGRFVRMFCGPVNVRALRKDVQLKVKEEYNRYRDKTA 128

Query:   146 XXXXXXXXXXXXXRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWI 205
                          RS+ W GCLPAFPVQLY+AWLLFLY GLA+RENILR NGSDIRPWW+
Sbjct:   129 LLFLFFPATLLILRSYYWGGCLPAFPVQLYEAWLLFLYAGLAMRENILRANGSDIRPWWL 188

Query:   206 YHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRI 265
             YHHYCAM MALVSLTWEIKGQPNC QKQRGV LFLQWAMMQGVAMLLQNRYQRQRLYTRI
Sbjct:   189 YHHYCAMAMALVSLTWEIKGQPNCVQKQRGVHLFLQWAMMQGVAMLLQNRYQRQRLYTRI 248

Query:   266 ALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFC 325
             ALGKAKRMDVVWGETAGVDGQLWLLCPILFILQ FEAYVGLLLL+  + GVV EWQV  C
Sbjct:   249 ALGKAKRMDVVWGETAGVDGQLWLLCPILFILQVFEAYVGLLLLRKTVTGVVNEWQVMVC 308

Query:   326 GALLVLMAVGNFINTVQTLM 345
             G LLV+MAVGNFINTV+TLM
Sbjct:   309 GILLVVMAVGNFINTVETLM 328




GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016021 "integral to membrane" evidence=IEA
TAIR|locus:2196668 AT1G33230 "AT1G33230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288699 tmem120 "TMPIT-like family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q05B45 TMEM120A "Transmembrane protein 120A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2686991 Tmem120a "transmembrane protein 120A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311474 Tmem120a "transmembrane protein 120A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7N5 F1P7N5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BXJ8 TMEM120A "Transmembrane protein 120A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041010-17 zgc:103681 "zgc:103681" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070424-21 tmem120a "transmembrane protein 120A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00000451001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (361 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
pfam07851330 pfam07851, TMPIT, TMPIT-like protein 1e-110
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.004
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein Back     alignment and domain information
 Score =  325 bits (836), Expect = e-110
 Identities = 106/344 (30%), Positives = 171/344 (49%), Gaps = 17/344 (4%)

Query: 13  EEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNL 72
           EEE + + +E ++LQE       +    E+   Q   ++    +RL+ L+ S      +L
Sbjct: 3   EEEWKELEKEFQQLQETHRLYKQKLEEVEKLQEQCTSAIARQRKRLKQLIVSLKKLKKSL 62

Query: 73  LRFDSKLADKQLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLK 132
              DS+L + QLEE +++ +   +D ++  FLP K  G ++++ +G +NV    K  +  
Sbjct: 63  TPEDSELVE-QLEEQIKERKNQFFDMES--FLPKK-NGLYLRLVLGNVNVTLLSKQAKFA 118

Query: 133 VKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENI 192
            K+EY  ++    ++ LL   T L L ++            L+   L++ Y  L +RE+I
Sbjct: 119 YKDEYEKFKLYLTVILLLLAFTCLFLLNY-------RVLDALFNFLLVWYYCTLTIRESI 171

Query: 193 LRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLL 252
           L +NGS I+ WW++HHY +  ++ V LTW     P+    Q     FL ++M Q +   L
Sbjct: 172 LIVNGSRIKGWWVFHHYISTALSGVMLTW-----PDGEMYQLFRNQFLYFSMYQSLVQFL 226

Query: 253 QNRYQRQRLYTRIALGKAKRMDVVW-GETAGVDGQLWLLCPILFILQGFEAYVGLLLLKT 311
           QN YQ   LY   ALG+   MD+   G  + +   L  L P LF  Q F+ Y    L + 
Sbjct: 227 QNYYQSGCLYRLRALGERHNMDLTVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAWTLFRL 286

Query: 312 ALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMK 355
           A      EWQV  CG L +++ +GNF  T+  +  K R +AKMK
Sbjct: 287 ARHPECKEWQVFVCGLLFLVLFLGNFFTTLMVVYQKFRNQAKMK 330


A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. Length = 330

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
PF07851330 TMPIT: TMPIT-like protein; InterPro: IPR012926 A n 100.0
KOG4758220 consensus Predicted membrane protein [General func 100.0
KOG4758220 consensus Predicted membrane protein [General func 99.64
PF07851330 TMPIT: TMPIT-like protein; InterPro: IPR012926 A n 94.38
COG3883265 Uncharacterized protein conserved in bacteria [Fun 83.47
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this Back     alignment and domain information
Probab=100.00  E-value=1.1e-125  Score=920.74  Aligned_cols=313  Identities=34%  Similarity=0.600  Sum_probs=294.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHHHH
Q 017961            9 EKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKQLEEDL   88 (363)
Q Consensus         9 ~~~~~~e~~~klee~~~LQ~~~~s~i~rq~~e~~~l~~rl~~L~~~lkr~k~~l~~~~~~e~~~~~~~~~~~~~~l~~~i   88 (363)
                      .++...+..+|+||+.++|+.|+++|+||++       |+++++++|++|+++.+.    |      +++.++ +++++|
T Consensus        16 Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkk-------rLk~L~~sLk~~~~~~~~----e------~~~~i~-~L~~~I   77 (330)
T PF07851_consen   16 LQETHRSYKQKLEELSKLQDKCSSSISHQKK-------RLKELKKSLKRCKKSLSA----E------ERELIE-KLEEDI   77 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccCCCh----h------HHHHHH-HHHHHH
Confidence            4556678899999999999999999999977       999999999999854222    2      236677 699999


Q ss_pred             HHHhhhccccchhccCCCCCCCccceeecccceeeeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHH-HHhhcCCC
Q 017961           89 QKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILR-SWIWDGCL  167 (363)
Q Consensus        89 ~~~~~~~~~~dme~~LP~k~nG~yL~l~LG~vNvtll~k~~kf~yKdEYEkFKl~~t~i~ll~~~~ll~~~-~~~~~~~~  167 (363)
                      ++|+++++  |||++||+| ||+||+++||||||+++++++||+|||||||||+++|++++++|++|+++. +++.    
T Consensus        78 k~r~~~l~--DmEa~LPkk-NGlyL~liLGnVNVsll~k~~kf~yKdEYEkFKl~~tii~l~~~~~~~~~~~~r~~----  150 (330)
T PF07851_consen   78 KERRCQLF--DMEAFLPKK-NGLYLRLILGNVNVSLLSKQAKFKYKDEYEKFKLYLTIILLLFAVALLFLLNYRVL----  150 (330)
T ss_pred             HHHHhhHH--HHHhhCCCC-CCcccceecccccceecccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcChHHH----
Confidence            99999999  999999985 999999999999999999999999999999999999999999999887754 4444    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHhhhhhhcccccCCCchhhhhhhhhHHHHHHHHHH
Q 017961          168 PAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQG  247 (363)
Q Consensus       168 ~~~~~~~~~flLvwyYcTLtiREsIL~vNGSrIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~f~~qFl~fs~~qs  247 (363)
                          +++|+|||||||||||||||||+||||||||||+.|||+||++|||||||     |||+.||+||+||+.||+|||
T Consensus       151 ----d~~~~f~lvwyY~tLtiRE~IL~~NGS~Ik~WW~~HHy~s~~~s~v~Ltw-----p~~~~~~~fr~~fl~f~~~~~  221 (330)
T PF07851_consen  151 ----DQLFNFLLVWYYCTLTIRESILIVNGSRIKGWWVFHHYISTFLSGVMLTW-----PDGEAYQKFRPQFLLFSLYQS  221 (330)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHhccccC-----CCcHHHHHHHHHHHHHHHHHH
Confidence                45999999999999999999999999999999999999999999999999     799999999999999999999


Q ss_pred             HHHHHHHHhhhhhhHHHHHhccccccccc-ccCccccccchHhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q 017961          248 VAMLLQNRYQRQRLYTRIALGKAKRMDVV-WGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCG  326 (363)
Q Consensus       248 ~Vq~lQ~rYQrgcLYrl~ALGe~~~MDvt-~g~~~~v~ggLtfLlPfLf~g~~fQlYna~~L~~~~~~~~~~EWQV~~~~  326 (363)
                      +||+||||||||||||||||||||+|||| +|++|||.||||||+||||+||+||+||||+||+++++|+|+||||+|||
T Consensus       222 ~vq~lQ~~YQ~~~Ly~l~AlG~~~~mdvt~eG~~s~~~~~L~fLlPfLf~~~~~q~yn~~~l~~~~~~~~~~ewqv~~~~  301 (330)
T PF07851_consen  222 VVQFLQYRYQRGCLYRLRALGKRHNMDVTVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAYTLFELSYHPECREWQVFVCG  301 (330)
T ss_pred             HHHHHHHHHHHhHHHHHHHhccCccceeeecccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHH
Confidence            99999999999999999999999999999 79999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 017961          327 ALLVLMAVGNFINTVQTLMTKSRFKAKMK  355 (363)
Q Consensus       327 llf~il~~GNf~TTl~vv~~K~~~~~~~~  355 (363)
                      ++|++||+|||+||++|+++|+++++|||
T Consensus       302 ~~f~~l~~gN~~tt~~v~~~K~~~~~~~~  330 (330)
T PF07851_consen  302 LLFLILFLGNFFTTLKVVHQKLKKKAKMK  330 (330)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhhccC
Confidence            99999999999999999999999999986



; GO: 0016021 integral to membrane

>KOG4758 consensus Predicted membrane protein [General function prediction only] Back     alignment and domain information
>KOG4758 consensus Predicted membrane protein [General function prediction only] Back     alignment and domain information
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 57/379 (15%), Positives = 117/379 (30%), Gaps = 107/379 (28%)

Query: 8   CEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSIS 67
             K +EE V++ VEE   L+     L++   +E+   RQ ++     I + R  L++   
Sbjct: 72  LSK-QEEMVQKFVEEV--LRINYKFLMSPIKTEQ---RQPSMMTRMYIEQ-RDRLYNDNQ 124

Query: 68  --STNNLLRFDSKLADKQLEEDLQKAQCLIYDGD---------ASAFLPSKAQGAFV-KM 115
             +  N+ R    L  +Q   +L+ A+ ++ DG              L  K Q     K+
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 116 F---IGPIN------------------VRASRKDVQLKVKEEYNSYRDRTALLFLL--FP 152
           F   +   N                     SR D    +K   +S +     L     + 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 153 STLLILR----SWIWDGCLPAFPVQ--------------------LYQAWLLFLYTGLAL 188
           + LL+L     +  W+    AF +                          L      L  
Sbjct: 245 NCLLVLLNVQNAKAWN----AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 189 RE------NILRINGSDIRPWWIYHH--YCAMLMALVS---LTWEIKGQPNCAQKQRGVQ 237
            E        L     D+    +  +    +++   +     TW+     NC +    ++
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 238 LFLQWAMMQGVAMLLQNRYQRQRLYTRIALG------KAKRMDVVWGETAGVDGQLWLLC 291
             L           +    + ++++ R+++           + ++W +    D  +    
Sbjct: 361 SSLN----------VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV---- 406

Query: 292 PILFILQGFEAYVGLLLLK 310
               ++     Y   L+ K
Sbjct: 407 ----VVNKLHKY--SLVEK 419


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00