Citrus Sinensis ID: 017966

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
cccccccccccEEEcccHHHHHHHHHHHcccccEEccccccccEEEEccccccccEEEEEEEEEccccEEEEEcccccccccccccccEEEccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccEEEEEEccccccHHHHHccHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHcc
ccccccccccEEEEEccHHHHHHHHHHHHccEEEEEccccEEEEEEEEcccccccEEEEEEEEEccccEEEEEccccEEccccHHHHEEEEccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEcccEEEEEEEEEccccccHccHHHHHcccccccccccccHHHHHHHHHHHcccccEEEEEEcccccEEEEEccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccHHHHHHHHHHHccccccccHcccHHHHHHHHHHHHHHHHHHcc
mlfgkrgksGLVALNLDLAQVAEFVKGRlgtevemggckgpittfivepfvphnqEYYLSIVSdrlgctisfsecggieieenwDKVKTIflptekhmtldacapliatlplefrgkigDFIMGVFAVFqdldfsfiemnpftlvngepypldmrgelddTAAFKNFKkwaniefplpfgrvlsstESFIHSldektsaslkftvlnpkgrIWTMVAGGGASVIYADtvgdlgyaselgnyaeysgapneEEVLQYARVVIDCatadpdgrKRALLIgggianftdVATTFNGIIRALREKESKLKAARMHIFvrrggpnyqTGLAKMRALGEelgiplevygpeatmtGICKQAIDCIMSAS
mlfgkrgksglvaLNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSEcggieieenwDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSldektsaslkFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIgggianftdvATTFNGIIRALREKESKLKAARMHIfvrrggpnyqTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
*********GLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM***
MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLS**************ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM***
MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
*****RGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
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MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
Q2QZ86423 ATP-citrate synthase alph yes no 1.0 0.858 0.917 0.0
O80526424 ATP-citrate synthase alph yes no 0.991 0.849 0.911 0.0
Q2QNG7423 ATP-citrate synthase alph no no 1.0 0.858 0.900 0.0
O22718423 ATP-citrate synthase alph no no 1.0 0.858 0.829 0.0
Q9SGY2423 ATP-citrate synthase alph no no 1.0 0.858 0.834 0.0
Q53JY8407 ATP-citrate synthase subu no no 0.953 0.850 0.854 0.0
Q91V92 1091 ATP-citrate synthase OS=M yes no 0.977 0.325 0.449 6e-84
P16638 1100 ATP-citrate synthase OS=R yes no 0.969 0.32 0.448 3e-83
Q2TCH3 1101 ATP-citrate synthase OS=O N/A no 0.972 0.320 0.444 1e-82
P53396 1101 ATP-citrate synthase OS=H yes no 0.972 0.320 0.444 1e-82
>sp|Q2QZ86|ACLA2_ORYSJ ATP-citrate synthase alpha chain protein 2 OS=Oryza sativa subsp. japonica GN=ACLA-2 PE=2 SV=2 Back     alignment and function desciption
 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/363 (91%), Positives = 347/363 (95%)

Query: 1   MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLS 60
           MLFGKRGKSGLVALNLD+AQV EFVK RLG EVEMGGCK PITTFIVEPFVPH+QEYYLS
Sbjct: 61  MLFGKRGKSGLVALNLDIAQVKEFVKERLGVEVEMGGCKAPITTFIVEPFVPHDQEYYLS 120

Query: 61  IVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGD 120
           IVS+RLG TISFSECGGIEIEENWDKVKTIFLPTEK MT DACAPLIATLPLE RGKIGD
Sbjct: 121 IVSERLGSTISFSECGGIEIEENWDKVKTIFLPTEKPMTPDACAPLIATLPLEARGKIGD 180

Query: 121 FIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFG 180
           FI GVFAVFQDLDFSF+EMNPFT+VNGEPYPLDMRGELDDTAAFKNFKKW NIEFPLPFG
Sbjct: 181 FIKGVFAVFQDLDFSFLEMNPFTIVNGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240

Query: 181 RVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 240
           RVLSSTE FIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVLSSTEGFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300

Query: 241 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALRE 300
           YAEYSGAPNEEEVLQYARVV+DCATADPDGRKRALLIGGGIANFTDV  TF+GIIRALRE
Sbjct: 301 YAEYSGAPNEEEVLQYARVVLDCATADPDGRKRALLIGGGIANFTDVGATFSGIIRALRE 360

Query: 301 KESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360
           KESKLKAARMHI+VRRGGPNYQTGLAKMR LG ELG+P+EVYGPEATMTGICKQAI+C+M
Sbjct: 361 KESKLKAARMHIYVRRGGPNYQTGLAKMRKLGAELGVPIEVYGPEATMTGICKQAIECVM 420

Query: 361 SAS 363
           +A+
Sbjct: 421 AAA 423
ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 8
>sp|O80526|ACLA3_ARATH ATP-citrate synthase alpha chain protein 3 OS=Arabidopsis thaliana GN=ACLA-3 PE=2 SV=1 Back     alignment and function description
>sp|Q2QNG7|ACLA3_ORYSJ ATP-citrate synthase alpha chain protein 3 OS=Oryza sativa subsp. japonica GN=ACLA-3 PE=2 SV=1 Back     alignment and function description
>sp|O22718|ACLA2_ARATH ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana GN=ACLA-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SGY2|ACLA1_ARATH ATP-citrate synthase alpha chain protein 1 OS=Arabidopsis thaliana GN=ACLA-1 PE=1 SV=1 Back     alignment and function description
>sp|Q53JY8|ACLA1_ORYSJ ATP-citrate synthase subunit alpha chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLA-1 PE=3 SV=2 Back     alignment and function description
>sp|Q91V92|ACLY_MOUSE ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1 Back     alignment and function description
>sp|P16638|ACLY_RAT ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1 Back     alignment and function description
>sp|Q2TCH3|ACLY_SHEEP ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1 Back     alignment and function description
>sp|P53396|ACLY_HUMAN ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
378405606423 ATP-citrate synthase [Camellia sinensis] 1.0 0.858 0.944 0.0
255543008423 ATP-citrate synthase, putative [Ricinus 1.0 0.858 0.942 0.0
449435576423 PREDICTED: ATP-citrate synthase alpha ch 1.0 0.858 0.936 0.0
224124562423 predicted protein [Populus trichocarpa] 1.0 0.858 0.928 0.0
224124954423 predicted protein [Populus trichocarpa] 1.0 0.858 0.925 0.0
225450474423 PREDICTED: ATP-citrate synthase alpha ch 1.0 0.858 0.925 0.0
359487578435 PREDICTED: ATP-citrate synthase alpha ch 1.0 0.834 0.925 0.0
147775765423 hypothetical protein VITISV_017316 [Viti 1.0 0.858 0.928 0.0
122248711423 RecName: Full=ATP-citrate synthase alpha 1.0 0.858 0.917 0.0
297843736424 ATP-citrate lyase A-3 [Arabidopsis lyrat 0.991 0.849 0.919 0.0
>gi|378405606|gb|AFB82642.1| ATP-citrate synthase [Camellia sinensis] Back     alignment and taxonomy information
 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/363 (94%), Positives = 354/363 (97%)

Query: 1   MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLS 60
           MLFGKRGKSGLVALNLDLAQVA+FVK RLG EVEMGGCK PITTFIVEPFVPH+QEYYLS
Sbjct: 61  MLFGKRGKSGLVALNLDLAQVADFVKARLGVEVEMGGCKAPITTFIVEPFVPHDQEYYLS 120

Query: 61  IVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGD 120
           IVSDRLGCTISFSECGGIEIEENWDKVKTI LPTEK MTL+ACAPLIATLPLE RGKIGD
Sbjct: 121 IVSDRLGCTISFSECGGIEIEENWDKVKTISLPTEKPMTLEACAPLIATLPLEVRGKIGD 180

Query: 121 FIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFG 180
           FI+GVFAVFQDLDFSF+EMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKW +IEFPLPFG
Sbjct: 181 FILGVFAVFQDLDFSFLEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWGDIEFPLPFG 240

Query: 181 RVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 240
           RVLS TESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVLSPTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300

Query: 241 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALRE 300
           YAEYSGAPNE+EVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVA TFNGIIRALRE
Sbjct: 301 YAEYSGAPNEDEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVAATFNGIIRALRE 360

Query: 301 KESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360
           KESKLKA+RMHI+VRRGGPNYQTGLAKMRALGEELG+PLEVYGPEATMTGICKQAIDCIM
Sbjct: 361 KESKLKASRMHIYVRRGGPNYQTGLAKMRALGEELGVPLEVYGPEATMTGICKQAIDCIM 420

Query: 361 SAS 363
           SA+
Sbjct: 421 SAA 423

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543008|ref|XP_002512567.1| ATP-citrate synthase, putative [Ricinus communis] gi|223548528|gb|EEF50019.1| ATP-citrate synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449435576|ref|XP_004135571.1| PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Cucumis sativus] gi|449508610|ref|XP_004163361.1| PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224124562|ref|XP_002330054.1| predicted protein [Populus trichocarpa] gi|222871479|gb|EEF08610.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124954|ref|XP_002319466.1| predicted protein [Populus trichocarpa] gi|222857842|gb|EEE95389.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225450474|ref|XP_002280514.1| PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform 1 [Vitis vinifera] gi|296089834|emb|CBI39653.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359487578|ref|XP_003633614.1| PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147775765|emb|CAN64797.1| hypothetical protein VITISV_017316 [Vitis vinifera] Back     alignment and taxonomy information
>gi|122248711|sp|Q2QZ86.2|ACLA2_ORYSJ RecName: Full=ATP-citrate synthase alpha chain protein 2; Short=ATP-citrate synthase A-2; AltName: Full=ATP-citrate lyase A-2; AltName: Full=Citrate cleavage enzyme A-2 gi|108864675|gb|ABA95548.2| ATP-citrate synthase, putative, expressed [Oryza sativa Japonica Group] gi|218186206|gb|EEC68633.1| hypothetical protein OsI_37024 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|297843736|ref|XP_002889749.1| ATP-citrate lyase A-3 [Arabidopsis lyrata subsp. lyrata] gi|297335591|gb|EFH66008.1| ATP-citrate lyase A-3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
TAIR|locus:2012310424 ACLA-3 "ATP-citrate lyase A-3" 0.991 0.849 0.911 1.7e-178
TAIR|locus:2025865423 ACLA-2 "ATP-citrate lyase A-2" 1.0 0.858 0.829 7.6e-167
DICTYBASE|DDB_G0278341450 DDB_G0278341 "putative ATP cit 0.986 0.795 0.563 1.6e-104
MGI|MGI:103251 1091 Acly "ATP citrate lyase" [Mus 0.977 0.325 0.449 2.3e-78
UNIPROTKB|J9NST7 1091 ACLY "Uncharacterized protein" 0.972 0.323 0.447 3e-78
UNIPROTKB|G3V9G4 1091 Acly "ATP citrate lyase, isofo 0.972 0.323 0.447 3e-78
UNIPROTKB|G3V888 1101 Acly "ATP citrate lyase, isofo 0.972 0.320 0.447 3e-78
ZFIN|ZDB-GENE-031113-1 1092 aclya "ATP citrate lyase a" [D 0.972 0.323 0.438 3.8e-78
RGD|2018 1100 Acly "ATP citrate lyase" [Ratt 0.969 0.32 0.448 3.9e-78
UNIPROTKB|F1LQS4 1100 Acly "ATP-citrate synthase" [R 0.969 0.32 0.448 5.1e-78
TAIR|locus:2012310 ACLA-3 "ATP-citrate lyase A-3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1733 (615.1 bits), Expect = 1.7e-178, P = 1.7e-178
 Identities = 328/360 (91%), Positives = 345/360 (95%)

Query:     1 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLS 60
             MLFGKRGKSGLVAL LDLA+VA+FVK RLGTEVEM GCK PITTFIVEPFVPH+QEYYLS
Sbjct:    61 MLFGKRGKSGLVALKLDLAEVADFVKARLGTEVEMEGCKAPITTFIVEPFVPHDQEYYLS 120

Query:    61 IVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGD 120
             IVSDRLGCTISFSECGGIEIEENWDKVKTIFLP EK MTL+ CAPLIATLPLE R KIG+
Sbjct:   121 IVSDRLGCTISFSECGGIEIEENWDKVKTIFLPAEKSMTLEVCAPLIATLPLEVRAKIGN 180

Query:   121 FIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFG 180
             FIMG FAVFQDLDFSF+EMNPFTLV+GEP+PLDMRGELDDTAAFKNF KW +IEFPLPFG
Sbjct:   181 FIMGAFAVFQDLDFSFMEMNPFTLVDGEPFPLDMRGELDDTAAFKNFNKWGDIEFPLPFG 240

Query:   181 RVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 240
             RVLSSTE+FIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct:   241 RVLSSTENFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300

Query:   241 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALRE 300
             YAEYSGAPNEEEVLQYARVVIDCAT DPDGRKRALLIGGGIANFTDVA TFNGIIRALRE
Sbjct:   301 YAEYSGAPNEEEVLQYARVVIDCATTDPDGRKRALLIGGGIANFTDVAATFNGIIRALRE 360

Query:   301 KESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360
             KE++LKA+RMHI+VRRGGPNYQTGLA+MRALGEELG+PLEVYGPEATMTGICK+AIDCIM
Sbjct:   361 KETRLKASRMHIYVRRGGPNYQTGLARMRALGEELGVPLEVYGPEATMTGICKRAIDCIM 420
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016874 "ligase activity" evidence=IEA
GO:0003878 "ATP citrate synthase activity" evidence=ISS
GO:0006085 "acetyl-CoA biosynthetic process" evidence=TAS
GO:0009346 "citrate lyase complex" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=RCA
TAIR|locus:2025865 ACLA-2 "ATP-citrate lyase A-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278341 DDB_G0278341 "putative ATP citrate synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:103251 Acly "ATP citrate lyase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9NST7 ACLY "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9G4 Acly "ATP citrate lyase, isoform CRA_b" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V888 Acly "ATP citrate lyase, isoform CRA_a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031113-1 aclya "ATP citrate lyase a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|2018 Acly "ATP citrate lyase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQS4 Acly "ATP-citrate synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SGY2ACLA1_ARATH2, ., 3, ., 3, ., 80.83471.00.8581nono
Q2QZ86ACLA2_ORYSJ2, ., 3, ., 3, ., 80.91731.00.8581yesno
Q53JY8ACLA1_ORYSJ2, ., 3, ., 3, ., 80.85430.95310.8501nono
O80526ACLA3_ARATH2, ., 3, ., 3, ., 80.91110.99170.8490yesno
O22718ACLA2_ARATH2, ., 3, ., 3, ., 80.82921.00.8581nono
Q2QNG7ACLA3_ORYSJ2, ., 3, ., 3, ., 80.90081.00.8581nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_1310041
ATP citrate (pro-S)-lyase (EC-2.3.3.8) (424 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIX.2128.1
hypothetical protein (435 aa)
     •  0.899
gw1.XIV.3318.1
aconitate hydratase 1 (EC-4.2.1.3) (897 aa)
     •  0.899
gw1.97.147.1
dihydrolipoamide acetyltransferase (448 aa)
     •  0.899
gw1.8105.3.1
annotation not avaliable (106 aa)
     •  0.899
gw1.4745.2.1
annotation not avaliable (67 aa)
     •  0.899
grail3.0001073802
SubName- Full=Putative uncharacterized protein; (354 aa)
     •  0.899
fgenesh4_pm.C_LG_I001100
malate dehydrogenase (EC-1.1.1.37) (356 aa)
     •  0.899
fgenesh4_pg.C_scaffold_155000049
malate dehydrogenase (EC-1.1.1.37) (412 aa)
     •  0.899
fgenesh4_pg.C_LG_III000191
SubName- Full=Putative uncharacterized protein; (512 aa)
     •  0.899
eugene3.01810009
aconitate hydratase 1 (EC-4.2.1.3) (899 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
PLN02235423 PLN02235, PLN02235, ATP citrate (pro-S)-lyase 0.0
COG0045387 COG0045, SucC, Succinyl-CoA synthetase, beta subun 4e-43
TIGR01016386 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be 1e-18
PRK00696388 PRK00696, sucC, succinyl-CoA synthetase subunit be 2e-12
pfam08442202 pfam08442, ATP-grasp_2, ATP-grasp domain 4e-11
PRK14046392 PRK14046, PRK14046, malate--CoA ligase subunit bet 6e-07
>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase Back     alignment and domain information 
 Score =  793 bits (2050), Expect = 0.0
 Identities = 330/363 (90%), Positives = 346/363 (95%)

Query: 1   MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLS 60
           MLFGKRGKSGLVALNLDLAQVA FVK RLG EVEMGGCKGPITTFIVEPFVPH+QE+YLS
Sbjct: 61  MLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLS 120

Query: 61  IVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGD 120
           IVSDRLGC+ISFSECGGIEIEENWDKVKTIFLPTE  +T + CAPLIATLPLE RGKI +
Sbjct: 121 IVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEAPLTSEICAPLIATLPLEIRGKIEE 180

Query: 121 FIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFG 180
           FI GVFAVFQDLDF+F+EMNPFTLV+GEPYPLDMRGELDDTAAFKNFKKW NIEFPLPFG
Sbjct: 181 FIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240

Query: 181 RVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 240
           RV+S TESFIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300

Query: 241 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALRE 300
           YAEYSGAPNEEEVLQYARVVIDCATA+PDGRKRALLIGGGIANFTDVA TFNGIIRALRE
Sbjct: 301 YAEYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALRE 360

Query: 301 KESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 360
           KESKLKAARMHIFVRRGGPNYQ GLAKMRALGEE+G+P+EVYGPEATMTGICKQAID I 
Sbjct: 361 KESKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAIDYIT 420

Query: 361 SAS 363
           +A+
Sbjct: 421 AAA 423

Length = 423
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain Back     alignment and domain information
>gnl|CDD|237594 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
PLN02235423 ATP citrate (pro-S)-lyase 100.0
COG0045387 SucC Succinyl-CoA synthetase, beta subunit [Energy 100.0
PLN00124422 succinyl-CoA ligase [GDP-forming] subunit beta; Pr 100.0
PRK14046392 malate--CoA ligase subunit beta; Provisional 100.0
TIGR01016386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 100.0
KOG1447412 consensus GTP-specific succinyl-CoA synthetase, be 100.0
PRK00696388 sucC succinyl-CoA synthetase subunit beta; Provisi 100.0
KOG2799434 consensus Succinyl-CoA synthetase, beta subunit [E 100.0
PF08442202 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 100.0
PF13549222 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. 99.93
KOG1254 600 consensus ATP-citrate lyase [Energy production and 99.91
PF00549153 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e 99.73
TIGR02717447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 99.63
COG1042 598 Acyl-CoA synthetase (NDP forming) [Energy producti 99.57
COG1042598 Acyl-CoA synthetase (NDP forming) [Energy producti 98.12
PLN02522 608 ATP citrate (pro-S)-lyase 97.41
PF13607138 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin 97.14
PTZ00187317 succinyl-CoA synthetase alpha subunit; Provisional 97.13
PRK06091 555 membrane protein FdrA; Validated 97.08
COG0074293 SucD Succinyl-CoA synthetase, alpha subunit [Energ 96.94
TIGR02717 447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 96.73
TIGR01019286 sucCoAalpha succinyl-CoA synthetase, alpha subunit 96.39
PLN00125300 Succinyl-CoA ligase [GDP-forming] subunit alpha 96.35
PRK05678291 succinyl-CoA synthetase subunit alpha; Validated 96.13
KOG1255329 consensus Succinyl-CoA synthetase, alpha subunit [ 92.69
PRK08654499 pyruvate carboxylase subunit A; Validated 92.56
TIGR00640132 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal 92.49
PRK02261137 methylaspartate mutase subunit S; Provisional 91.02
PRK14569296 D-alanyl-alanine synthetase A; Provisional 90.69
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 90.57
PRK07178472 pyruvate carboxylase subunit A; Validated 88.91
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 88.14
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 87.59
PLN02735 1102 carbamoyl-phosphate synthase 87.43
cd02071122 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin 87.15
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 86.89
PRK08462445 biotin carboxylase; Validated 86.74
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 86.03
COG0616 317 SppA Periplasmic serine proteases (ClpP class) [Po 85.33
PRK10949 618 protease 4; Provisional 85.1
cd07014177 S49_SppA Signal peptide peptidase A. Signal peptid 84.81
cd00578 452 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase 84.64
PF02601 319 Exonuc_VII_L: Exonuclease VII, large subunit; Inte 84.23
PRK12833467 acetyl-CoA carboxylase biotin carboxylase subunit; 84.18
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 83.77
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 83.67
PRK06091555 membrane protein FdrA; Validated 82.83
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 82.61
cd02072128 Glm_B12_BD B12 binding domain of glutamate mutase 82.59
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 82.45
PLN02948577 phosphoribosylaminoimidazole carboxylase 82.21
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 82.13
TIGR00705 584 SppA_67K signal peptide peptidase SppA, 67K type. 81.88
PRK08463478 acetyl-CoA carboxylase subunit A; Validated 81.02
cd07019211 S49_SppA_1 Signal peptide peptidase A (SppA), a se 80.6
TIGR02313 294 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac 80.32
PRK12999 1146 pyruvate carboxylase; Reviewed 80.01
>PLN02235 ATP citrate (pro-S)-lyase Back     alignment and domain information 
Probab=100.00  E-value=3e-90  Score=682.48  Aligned_cols=361  Identities=91%  Similarity=1.438  Sum_probs=338.8

Q ss_pred             CCccccCccCeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCCCceEEEEEEEeCCCCeEEEeccCCCcc
Q 017966            1 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEI   80 (363)
Q Consensus         1 ~~~GgRGKaGGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~~~E~ylgi~~D~~~p~ii~s~~GGv~v   80 (363)
                      +|+|||||+|||+++.|++|+++++++|+++.+.+++++++|++|||||++++.+|||+|++.||..+.|++|.+|||||
T Consensus        61 vl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~S~~GGvdI  140 (423)
T PLN02235         61 MLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISFSECGGIEI  140 (423)
T ss_pred             cccCCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEEEECCCCCcc
Confidence            58999999999999999999999999999999977777779999999999999999999999999988899999999999


Q ss_pred             ccccCceEEEecCCccCCCHHhHHhHHhCCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeeecCCceEEeeeeeeecc
Q 017966           81 EENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDD  160 (363)
Q Consensus        81 E~~~d~~~~~pi~~~~~i~~~~a~~ll~g~~~~d~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~g~~~alDaki~ldd  160 (363)
                      |+.|+++++++|+|..+++++++++++.+++....+++.+++.+||++|.++|++++|||||++.||+++|+|+|+.+||
T Consensus       141 Ee~pe~i~k~~Id~~~gl~~~~~~~~~~~l~~~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~~dg~~~alDaK~~~DD  220 (423)
T PLN02235        141 EENWDKVKTIFLPTEAPLTSEICAPLIATLPLEIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDD  220 (423)
T ss_pred             cCChhHeEEEEcCCCCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCeEEEecceEeeCCCEEEEEeEEcccC
Confidence            99999999999999999999999999998888888999999999999999999999999999997789999999999999


Q ss_pred             hhhhcccccccccccCCCCCCCCChhhhcccccchhhhccCCceEecCCCcEEEEecCCcHHHHHHHHHHhcCCCCCCCc
Q 017966          161 TAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN  240 (363)
Q Consensus       161 ~a~~R~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~paN  240 (363)
                      ||+|||++.|..+.+|.||+++.+|+|.++.++|+++.+++++++|+|+||||||+||||++|+|||++..+|.+|+|||
T Consensus       221 nA~fR~~~~~~~~~f~~~fgr~~~~~E~~~~~~d~a~~~~l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pAN  300 (423)
T PLN02235        221 TAAFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN  300 (423)
T ss_pred             CCcccCHhHhhhhcccccccCCCCHHHHhhccchhhhccCCceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCce
Confidence            99999999898888999999999999999888887777765555599999999999999999999999999844499999


Q ss_pred             eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 017966          241 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN  320 (363)
Q Consensus       241 ~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~  320 (363)
                      |+|+||+|+.++++++++++|++|++||+++++||||||||++||+||+||+||++|++++..++++.++|||||++|||
T Consensus       301 FlDvGG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN  380 (423)
T PLN02235        301 YAEYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPN  380 (423)
T ss_pred             eeecCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999987555556899999999999


Q ss_pred             HHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 017966          321 YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS  361 (363)
Q Consensus       321 ~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~~~~~  361 (363)
                      +++|+++|+++++++|+|+++|++.+||++||+++++..-.
T Consensus       381 ~eeG~~il~e~~~~~gl~i~~~~~~~~m~~a~~~av~~~~~  421 (423)
T PLN02235        381 YQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAIDYITA  421 (423)
T ss_pred             HHHHHHHHHHhHHhcCCcEEEeCCCCCHHHHHHHHHhhhcc
Confidence            99999999988888999999999999999999999975433

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A Back     alignment and domain information
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion] Back     alignment and domain information
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>PLN02522 ATP citrate (pro-S)-lyase Back     alignment and domain information
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A Back     alignment and domain information
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional Back     alignment and domain information
>PRK06091 membrane protein FdrA; Validated Back     alignment and domain information
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit Back     alignment and domain information
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha Back     alignment and domain information
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated Back     alignment and domain information
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain Back     alignment and domain information
>PRK02261 methylaspartate mutase subunit S; Provisional Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10949 protease 4; Provisional Back     alignment and domain information
>cd07014 S49_SppA Signal peptide peptidase A Back     alignment and domain information
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins Back     alignment and domain information
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK06091 membrane protein FdrA; Validated Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
3pff_A 829 Truncated Human Atp-Citrate Lyase With Adp And Tart 9e-84
3mwe_A425 Truncated Human Atp-Citrate Lyase With Tartrate Bou 1e-83
3mwd_A425 Truncated Human Atp-Citrate Lyase With Citrate Boun 2e-81
1cqi_B385 Crystal Structure Of The Complex Of Adp And Mg2+ Wi 5e-07
1scu_B388 The Crystal Structure Of Succinyl-Coa Synthetase Fr 7e-07
1jll_B388 Crystal Structure Analysis Of The E197betaa Mutant 3e-06
1euc_B396 Crystal Structure Of Dephosphorylated Pig Heart, Gt 1e-05
2fp4_B395 Crystal Structure Of Pig Gtp-Specific Succinyl-Coa 1e-05
1eud_B396 Crystal Structure Of Phosphorylated Pig Heart, Gtp- 1e-05
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate Bound Length = 829 Back     alignment and structure 
Iteration: 1

 Score =  306 bits (785), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 160/361 (44%), Positives = 228/361 (63%), Gaps = 7/361 (1%)
Query: 1   MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ--EYY 58
            L  +RGK GLV +NL L  V  ++K RLG E  +G   G +  F++EPFVPH+Q  E+Y
Sbjct: 61  QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 59  LSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTL-DACAPLIATLPLEFRGK 117
           + I + R G  + F   GG+++ +   K + + +  ++ +   D    L+   P + +  
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 118 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPL 177
           +  FI G+F  ++DL F+++E+NP  +     Y LD+  ++D TA +    KW +IEFP 
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 178 PFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 237
           PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 238 LGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIGGGIANFTDVATTFNGII 295
           L NY EYSGAP+E++   YA+ ++   T +  PDG  + L+IGG IANFT+VA TF GI+
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIV 358
Query: 296 RALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 355
           RA+R+ +  LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A
Sbjct: 359 RAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418
Query: 356 I 356
           +
Sbjct: 419 L 419
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound Length = 425 Back     alignment and structure
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound Length = 425 Back     alignment and structure
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 385 Back     alignment and structure
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From Escherichia Coli At 2.5 Angstroms Resolution Length = 388 Back     alignment and structure
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E. Coli Scs Length = 388 Back     alignment and structure
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 396 Back     alignment and structure
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 395 Back     alignment and structure
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 396 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 1e-180
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 1e-152
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 1e-11
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 1e-10
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829 Back     alignment and structure
 Score =  519 bits (1337), Expect = e-180
 Identities = 157/366 (42%), Positives = 226/366 (61%), Gaps = 3/366 (0%)

Query: 1   MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ--EYY 58
            L  +RGK GLV +NL L  V  ++K RLG E  +G   G +  F++EPFVPH+Q  E+Y
Sbjct: 61  QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120

Query: 59  LSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTL-DACAPLIATLPLEFRGK 117
           + I + R G  + F   GG+++ +   K + + +  ++ +   D    L+   P + +  
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180

Query: 118 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPL 177
           +  FI G+F  ++DL F+++E+NP  +     Y LD+  ++D TA +    KW +IEFP 
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240

Query: 178 PFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 237
           PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300

Query: 238 LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRA 297
           L NY EYSGAP+E++   YA+ ++   T +     + L+IGG IANFT+VA TF GI+RA
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA 360

Query: 298 LREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 357
           +R+ +  LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A+ 
Sbjct: 361 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG 420

Query: 358 CIMSAS 363
                +
Sbjct: 421 HRPIPN 426
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425 Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Length = 397 Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Length = 388 Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Length = 395 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 100.0
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 100.0
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 100.0
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 100.0
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 100.0
1wr2_A238 Hypothetical protein PH1789; structural genomics, 99.91
2csu_A457 457AA long hypothetical protein; structural genomi 99.86
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 99.32
3mwd_B334 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 97.21
3dmy_A 480 Protein FDRA; predicted actyl-COA synthetase, nysg 97.02
2fp4_A305 Succinyl-COA ligase [GDP-forming] alpha-chain, mit 96.91
1oi7_A288 Succinyl-COA synthetase alpha chain; SCS, ligase, 96.88
2yv2_A297 Succinyl-COA synthetase alpha chain; COA-binding d 96.74
2yv1_A294 Succinyl-COA ligase [ADP-forming] subunit alpha; C 96.69
2nu8_A288 Succinyl-COA ligase [ADP-forming] subunit alpha; c 96.38
3pff_A829 ATP-citrate synthase; phosphohistidine, organic ac 95.72
2csu_A 457 457AA long hypothetical protein; structural genomi 95.15
3glk_A540 Acetyl-COA carboxylase 2; ATP binding, alternative 94.43
3jrx_A587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 94.36
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 93.81
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 93.1
3ouz_A446 Biotin carboxylase; structural genomics, center fo 92.33
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 91.23
1w96_A554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 90.25
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 89.82
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 89.3
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 88.72
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 87.92
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 87.62
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 87.3
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 86.52
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 85.86
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 85.76
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 85.31
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 85.18
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 85.14
2yxb_A161 Coenzyme B12-dependent mutase; alpha/beta, structu 85.11
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 83.98
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 83.35
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 82.7
1a9x_A1073 Carbamoyl phosphate synthetase (large chain); amid 82.22
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 81.96
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 80.65
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 80.44
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Back     alignment and structure
Probab=100.00  E-value=9.3e-88  Score=673.44  Aligned_cols=354  Identities=44%  Similarity=0.808  Sum_probs=329.3

Q ss_pred             CCccccCccCeEEeeCCHHHHHHHHHHHhcccccccCCceeeeEEEEeeecCC--CceEEEEEEEeCCCCeEEEeccCCC
Q 017966            1 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPH--NQEYYLSIVSDRLGCTISFSECGGI   78 (363)
Q Consensus         1 ~~~GgRGKaGGV~l~~~~eea~~aa~~ll~~~~~~~~~~~~v~gvLVe~~~~~--~~E~ylgi~~D~~~p~ii~s~~GGv   78 (363)
                      +++|||||+|||+++.|++|+++++++|+++...++.|.+++++||||+|+++  ++|+|+|+++||.+|+|+||++|||
T Consensus        61 v~~ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s~~GGv  140 (425)
T 3mwd_A           61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGV  140 (425)
T ss_dssp             SSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCST
T ss_pred             cccCCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEECCCCc
Confidence            46899999999999999999999999999999865567778999999999976  5999999999999999999999999


Q ss_pred             ccccccCceEEEecCCccCCCHHhH-HhHHhCCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEeeeee
Q 017966           79 EIEENWDKVKTIFLPTEKHMTLDAC-APLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRG  156 (363)
Q Consensus        79 ~vE~~~d~~~~~pi~~~~~i~~~~a-~~ll~g~~~~d~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki  156 (363)
                      +||+++|++.++|+++..++....+ ++++.++++.++++++++|.+||++|.++|++++|||||++ ++| ++|+|||+
T Consensus       141 ~IE~vad~~~~~~i~~~~~l~~~~~~~~ll~g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~g-v~AlDAki  219 (425)
T 3mwd_A          141 DVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAA  219 (425)
T ss_dssp             TCCSHHHHSEEEEEETTCCCCHHHHHHTTTTTSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCEEE
T ss_pred             cHhHhhcccceEecCCccccCHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCc-eEEEecee
Confidence            9999999887778888777888777 67888899899999999999999999999999999999999 665 99999999


Q ss_pred             eecchhhhcccccccccccCCCCCCCCChhhhcccccchhhhccCCceEecCCCcEEEEecCCcHHHHHHHHHHhcCCCC
Q 017966          157 ELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS  236 (363)
Q Consensus       157 ~ldd~a~~R~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg  236 (363)
                      ++||||+||||++|..+++|.+|.++.+|+|.++.++|++.+++++++||+|+||||||+||||++|+|||+|..+  ||
T Consensus       220 ~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~~--Gg  297 (425)
T 3mwd_A          220 KVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDL--GG  297 (425)
T ss_dssp             EEEGGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHT--TC
T ss_pred             ecccchhhhChhhhhhhhccccccccCChhhhhhhhhhhhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHHc--CC
Confidence            9999999999999998899888999999999999999999999999999999999999999999999999999997  88


Q ss_pred             --CCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEE
Q 017966          237 --ELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV  314 (363)
Q Consensus       237 --~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvv  314 (363)
                        +||||+|+||+|++++++++++.+++++++||+||++||||||||++|++||+||+||++|+++...++...++||||
T Consensus       298 ~~~pANflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivV  377 (425)
T 3mwd_A          298 VNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFV  377 (425)
T ss_dssp             GGGBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEE
T ss_pred             CcCCcceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEE
Confidence              799999999999999999998888888888999999999999999999999999999999999975322235799999


Q ss_pred             EeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 017966          315 RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID  357 (363)
Q Consensus       315 rl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~~~  357 (363)
                      |++|||+++|+++|++.+++.|+|+|+||++++|++.|.+|+.
T Consensus       378 Rl~Gtn~~eg~~il~~~g~~lgip~~~~gpe~~~~~i~~~a~~  420 (425)
T 3mwd_A          378 RRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG  420 (425)
T ss_dssp             ECBSTTHHHHHHHHHHHHHHHTCCEEEECTTSCTTHHHHHHTT
T ss_pred             ECCcCCHHHHHHHHHhCCcccCCceEEeCccchHHHHHHHHhc
Confidence            9999999999999999888888999999999999999999975
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Back     alignment and structure
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Back     alignment and structure
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Back     alignment and structure
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 363
d2nu7b1150 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta 3e-12
d2nu7b2238 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta- 6e-07
d1eucb2246 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta- 7e-07
d1eucb1148 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta 4e-05
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 150 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 21/147 (14%)

Query: 210 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPD 269
           G I  MV G G ++   D V   G   E  N+ +  G   +E V +  +++     +D  
Sbjct: 19  GNIGCMVNGAGLAMGTMDIVKLHG--GEPANFLDVGGGATKERVTEAFKII----LSDDK 72

Query: 270 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 329
            +    ++              +GII A+ E    +      + VR  G N + G  K+ 
Sbjct: 73  VKA---VLVNIFGGIVRCDLIADGIIGAVAEVGVNVP-----VVVRLEGNNAELGAKKLA 124

Query: 330 ALGEELGIPLEVYGPEATMTGICKQAI 356
               + G+ +        +T   +Q +
Sbjct: 125 ----DSGLNII---AAKGLTDAAQQVV 144
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238 Back     information, alignment and structure
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 Back     information, alignment and structure
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 148 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
d1eucb1148 Succinyl-CoA synthetase, beta-chain, C-terminal do 100.0
d2nu7b1150 Succinyl-CoA synthetase, beta-chain, C-terminal do 100.0
d2nu7b2238 Succinyl-CoA synthetase, beta-chain, N-terminal do 100.0
d1eucb2246 Succinyl-CoA synthetase, beta-chain, N-terminal do 99.97
d2csua3163 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 99.73
d2csua2161 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 97.6
d1oi7a2167 Succinyl-CoA synthetase, alpha-chain, C-terminal d 97.07
d2nu7a2166 Succinyl-CoA synthetase, alpha-chain, C-terminal d 95.48
d1euca2176 Succinyl-CoA synthetase, alpha-chain, C-terminal d 94.45
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 93.23
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 92.4
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 88.89
d1ccwa_137 Glutamate mutase, small subunit {Clostridium cochl 87.87
d7reqa2168 Methylmalonyl-CoA mutase alpha subunit, C-terminal 86.9
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 81.68
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 81.4
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 81.17
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.5e-44  Score=306.75  Aligned_cols=143  Identities=24%  Similarity=0.377  Sum_probs=135.6

Q ss_pred             hhhccCCceEecCCCcEEEEecCCcHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEE
Q 017966          196 KTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRAL  275 (363)
Q Consensus       196 ~~~~~~~~~~i~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~e~~~~a~~~ll~~~~~~~~v~~vlv  275 (363)
                      .+|++++++||+|+|+||||+||+|++|+|||++..+  ||+||||+|+||+|+.+++++|++++++    ||+||+|||
T Consensus         5 ~~a~~~~l~yv~LdG~IG~i~NGAGlaMaTmD~i~~~--Gg~pANFlDiGGga~~e~v~~al~iil~----d~~Vk~IlI   78 (148)
T d1eucb1           5 NEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLN--GGKPANFLDLGGGVKESQVYQAFKLLTA----DPKVEAILV   78 (148)
T ss_dssp             HHHHHTTCEEEECSCSEEEEESSHHHHHHHHHHHHHT--TCCBSEEEECCSSCCHHHHHHHHHHTTS----CTTCCEEEE
T ss_pred             HHHHHcCCcEEEecCcEEEEecCCccchhHHHHHHHc--CCCeeeEEecCCCCCHHHHHHHHHHHHC----CCCccEEEE
Confidence            3488999999999999999999999999999999997  9999999999999999999999999998    999999999


Q ss_pred             EecccCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHH
Q 017966          276 LIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA  355 (363)
Q Consensus       276 ~~~g~i~~~~~vA~~~~giv~a~~~~~~~~~~~~~pvvvrl~G~~~~~~~~~l~~~~~~~Gip~~~~~~~~~~~eav~~~  355 (363)
                      |+||||++|++||   +||++|+++.+     .++|+|+||.|||+++|+++|++    +|+|+++   ++||+||++++
T Consensus        79 NIfGGI~rcD~vA---~GIv~A~~e~~-----~~iPiVVRL~Gtn~eeg~~iL~~----sgl~i~~---~~~l~eAa~~a  143 (148)
T d1eucb1          79 NIFGGIVNCAIIA---NGITKACRELE-----LKVPLVVRLEGTNVHEAQNILTN----SGLPITS---AVDLEDAAKKA  143 (148)
T ss_dssp             EEECSSSCHHHHH---HHHHHHHHHHT-----CCSCEEEEEESTTHHHHHHHHHT----TCSSEEE---CSSHHHHHHHH
T ss_pred             EeeEeehhHHHHH---HHHHHHHHhcC-----CCccEEEEeccCChHHHHHHHHH----CCCCeEE---eCCHHHHHHHH
Confidence            9999999999999   99999999986     47999999999999999999996    9999987   68999999999


Q ss_pred             HHHh
Q 017966          356 IDCI  359 (363)
Q Consensus       356 ~~~~  359 (363)
                      ++.+
T Consensus       144 V~~~  147 (148)
T d1eucb1         144 VASV  147 (148)
T ss_dssp             HHTC
T ss_pred             HHhc
Confidence            9864
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} Back     information, alignment and structure
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure