Citrus Sinensis ID: 018000

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
Protein Sequence
MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQIL
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHcHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccEEEccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHccEEcHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHEcccccEccccccccEHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHEcccccEccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHcccHHHccHHHHHHHHHHcEcccccEEccccccEcccHHHHcccHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mepdteprgtvtqREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQqlgpsfcsldanrpwICYWILHSMALLgefvdadleDRTIEFLSrcqdpnggygggpgqmphLATTYAAVNALISlggekslpsinrsKVYTFLKcmkdpsgafrmhdageiDVRACYTAISVASILNILDDELLQNVGNYILSCqtyeggiagepgseahggytfCGLAAMILINEADRLDLDALIGWVVFRqgveggfqgrtnkLVDGCYSFWQGGVFALLRRFHsiigesptpvdqrgaecsidntqtttasdvsegdgssdeissqgdehchfqhrereplfHSIALQRYLLLCSQVQIL
Flexible Loop (DISEMBL)
mepdteprgtvtqreqSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLggekslpsinRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGesptpvdqrgaecsidntqtttasdvsegdgSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQIL
Low Complexity Region (SEG)
MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNggygggpgQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAsdvsegdgssdeissqgdeHCHFQHREREPLFHSIALQRYLLLCSQVQIL
Disordered region (IsUnstruct)
*****************MVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIG***************************************************EPLFHSIALQRYLLLCSQV***
Disordered Region (DISOPRED)
MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQIL
Disordered Region (DISEMBL)
************QREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNT**************************HFQHREREPLFHSIALQRYLLLCSQVQIL
Disordered Region (DISPRO)
*****EPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	362	2.2.26 [Sep-21-2011]
Q04903	419	Protein farnesyltransfera	N/A	no	0.867	0.749	0.588	1e-119
Q38920	482	Protein farnesyltransfera	yes	no	0.966	0.726	0.600	1e-109
P49355	437	Protein farnesyltransfera	yes	no	0.740	0.613	0.510	1e-70
Q8K2I1	437	Protein farnesyltransfera	yes	no	0.834	0.691	0.434	2e-70
Q02293	437	Protein farnesyltransfera	yes	no	0.825	0.684	0.436	3e-70
P49356	437	Protein farnesyltransfera	yes	no	0.825	0.684	0.436	5e-70
Q55D51	500	Protein farnesyltransfera	yes	no	0.662	0.48	0.408	5e-52
O13782	382	Protein farnesyltransfera	yes	no	0.674	0.638	0.404	9e-49
P22007	431	Protein farnesyltransfera	yes	no	0.765	0.642	0.379	7e-44
B0G172	339	Probable geranylgeranyl t	no	no	0.621	0.663	0.316	6e-29

>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB PE=2 SV=1

 Score =  427 bits (1099), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/374 (58%), Positives = 259/374 (69%), Gaps = 60/374 (16%)

Query: 7   PRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           P  TV+QR+Q +V + V  +Y ++A +PP AQ+++                         
Sbjct: 10  PTPTVSQRDQWIVESQVFHIYQLFANIPPNAQSII------------------------- 44

Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYA 126
               RPW+CYWI+HS+ALLGE +D DLED T++FL+RCQDPNGGY GGPGQMPHLATTYA
Sbjct: 45  ----RPWLCYWIIHSIALLGESIDDDLEDNTVDFLNRCQDPNGGYAGGPGQMPHLATTYA 100

Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVN LI+LGGEKSL SINR+K+Y F++ MK P+G FRMHD GEIDVRACYTAISVAS+LN
Sbjct: 101 AVNTLITLGGEKSLASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYTAISVASVLN 160

Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           ILDDEL++NVG++ILSCQTYEGG+AGEPGSEAHGGYTFCGLAAMILI E +RLDL  L+ 
Sbjct: 161 ILDDELIKNVGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLLD 220

Query: 247 WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDN 306
           WVVFRQG E GFQGRTNKLVDGCYSFWQGG  ALL+R HSII       D++ AE S   
Sbjct: 221 WVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHSII-------DEQMAEAS--- 270

Query: 307 TQTTTASDVSEGDGSSDEISSQGDEHCHF--------------------QHREREPLFHS 346
            Q  T SD  E     D  SS    H                       + R+ EPLFHS
Sbjct: 271 -QFVTVSDAPEEKECLDGTSSHATSHIRHEGMNESCSSDVKNIGYNFISEWRQSEPLFHS 329

Query: 347 IALQRYLLLCSQVQ 360
           IALQ+Y+LLCSQ Q
Sbjct: 330 IALQQYILLCSQEQ 343

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
Pisum sativum (taxid: 3888)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 8

>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana GN=FTB PE=1 SV=3

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/358 (60%), Positives = 260/358 (72%), Gaps = 8/358 (2%)

Query: 10  TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
           TV+QREQ +V NDV  +Y+ +       Q  MME+QR   ++YL++GL+QLGP F SLDA
Sbjct: 47  TVSQREQFLVENDVFGIYNYFDASDVSTQKYMMEIQRDKQLDYLMKGLRQLGPQFSSLDA 106

Query: 70  NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVN 129
           NRPW+CYWILHS+ALLGE VD +LE   I+FL RCQ   GGYGGGPGQ+PHLATTYAAVN
Sbjct: 107 NRPWLCYWILHSIALLGETVDDELESNAIDFLGRCQGSEGGYGGGPGQLPHLATTYAAVN 166

Query: 130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
           AL++LGG+K+L SINR K+  FL+ MKD SG FRMHD GE+DVRACYTAISVASILNI+D
Sbjct: 167 ALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEMDVRACYTAISVASILNIMD 226

Query: 190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
           DEL Q +G+YILSCQTYEGGI GEPGSEAHGGYT+CGLAAMILINE DRL+LD+L+ W V
Sbjct: 227 DELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRLNLDSLMNWAV 286

Query: 250 FRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRF-----HSIIGESPTPVDQRGAECSI 304
            RQGVE GFQGRTNKLVDGCY+FWQ     LL+R      H + G S           + 
Sbjct: 287 HRQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLYSTNDHDVHGSSHISEGTNEEHHAH 346

Query: 305 DNTQTTTASDVSEGDGSSDEISSQGDEHCH---FQHREREPLFHSIALQRYLLLCSQV 359
           D      + D  + D  +DE S  G    H   + +R  + +F S+ LQRY+LLCS++
Sbjct: 347 DEDDLEDSDDDDDSDEDNDEDSVNGHRIHHTSTYINRRMQLVFDSLGLQRYVLLCSKI 404

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2 SV=1

 Score =  267 bits (682), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/278 (51%), Positives = 182/278 (65%), Gaps = 10/278 (3%)

Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95

Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P GG+GGGPGQ PHLA TYA
Sbjct: 96  LDASRPWLCYWILHSLELLDEPIPQMVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYA 155

Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MHD GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYDVINREKLLQYLYSLKQPDGSFLMHDGGEVDVRSAYCAASVASLTN 215

Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ 
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 275

Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb PE=1 SV=1

 Score =  266 bits (680), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/350 (43%), Positives = 200/350 (57%), Gaps = 48/350 (13%)

Query: 10  TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
           TVT  EQ+ V   +  ++  Y     + + +   LQR+ H  YL RGL+QL  ++  LDA
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLI---LQREKHFHYLKRGLRQLTDAYECLDA 98

Query: 70  NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVN 129
           +RPW+CYWILHS+ LL E +   +     +FL  CQ P+GG+GGGPGQ PHLA TYAAVN
Sbjct: 99  SRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVN 158

Query: 130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
           AL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ NI+ 
Sbjct: 159 ALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIIT 218

Query: 190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
            +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ WV 
Sbjct: 219 PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVT 278

Query: 250 FRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQ 308
            RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R                         
Sbjct: 279 SRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR------------------------- 313

Query: 309 TTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 358
                           + +QGD      H     +FH  ALQ Y+L+C Q
Sbjct: 314 ---------------ALHAQGDPALSMSHW----MFHQQALQEYILMCCQ 344

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus GN=Fntb PE=1 SV=1

 Score =  265 bits (678), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 154/353 (43%), Positives = 200/353 (56%), Gaps = 54/353 (15%)

Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95

Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P+GG+GGGPGQ PHLA TYA
Sbjct: 96  LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 155

Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215

Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ 
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 275

Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSID 305
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R                      
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR---------------------- 313

Query: 306 NTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 358
                              + +QGD      H     +FH  ALQ Y+L+C Q
Sbjct: 314 ------------------ALHAQGDPALSMSHW----MFHQQALQEYILMCCQ 344

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB PE=1 SV=1

 Score =  265 bits (676), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 154/353 (43%), Positives = 198/353 (56%), Gaps = 54/353 (15%)

Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95

Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P GG+GGGPGQ PHLA TYA
Sbjct: 96  LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYA 155

Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215

Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++     L+L +L+ 
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQ 275

Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSID 305
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R                      
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR---------------------- 313

Query: 306 NTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 358
                              + +QGD      H     +FH  ALQ Y+L+C Q
Sbjct: 314 ------------------ALHAQGDPALSMSHW----MFHQQALQEYILMCCQ 344

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium discoideum GN=fntB PE=3 SV=1

 Score =  205 bits (521), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 105/257 (40%), Positives = 163/257 (63%), Gaps = 17/257 (6%)

Query: 44  LQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDA--DLEDRTIEFL 101
           +++K  + +L+ G++++  S   LD+++ WI +WIL+ M +L   +D+  ++  R  ++L
Sbjct: 56  IEKKKILNFLMNGIEKIPMSHQGLDSSKVWISFWILNGMDMLDS-LDSYPNISSRASKYL 114

Query: 102 S--------------RCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSK 147
           S                    GG+GGG     H+ +T+AAV+AL  +G E+S  +I+R  
Sbjct: 115 SILQNDDNNGNNNNRENNQNGGGFGGGNSHTSHVVSTFAAVSALYVIGTEESYKTIDREA 174

Query: 148 VYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYE 207
           +Y FL  MK   GAF   D GE D R  Y AI+VAS+LNIL  EL + V +++LSCQTYE
Sbjct: 175 MYKFLMRMKTKEGAFTSEDGGEYDSRTTYCAIAVASMLNILTAELERGVVDFLLSCQTYE 234

Query: 208 GGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVD 267
           GG    P +EAHGGYTFC +AA+ ++N   ++D+++L  W+ +RQ  +GGF+GRTNKLVD
Sbjct: 235 GGFGAYPFNEAHGGYTFCSVAALSILNSLHKIDMNSLHRWITYRQSNDGGFEGRTNKLVD 294

Query: 268 GCYSFWQGGVFALLRRF 284
            CYS+WQG V+ +++ +
Sbjct: 295 TCYSYWQGAVYIIIQSY 311

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1

 Score =  194 bits (493), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 152/247 (61%), Gaps = 3/247 (1%)

Query: 32  TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDA 91
            V P+          + H++YL + L  L   F  LDA+R W+ YW L S+A+LG+ +D+
Sbjct: 17  AVLPLLNGESQSFNLQKHLKYLTKMLDPLPSPFTVLDASRAWMVYWELSSLAILGK-LDS 75

Query: 92  DLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTF 151
            + +R I  + + + P+GG+ GG GQ  HL +TYA++ ++       +   I R ++Y +
Sbjct: 76  SVCERAISSVRQLKGPSGGFCGGNGQDEHLLSTYASILSICLCDSTDAYSLIERDRLYDW 135

Query: 152 LKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGI 210
           L  +K+P G+FR+++ GE D R+ Y A+ V+S++ I +DD L +    ++  CQTYEGG+
Sbjct: 136 LFSLKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKCQTYEGGL 195

Query: 211 AGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGC 269
           +G P +EAHGGYTFC LAA+ L+   D L+   L  W+V RQ     GF GR+NKLVDGC
Sbjct: 196 SGVPYAEAHGGYTFCALAAIALLGGLDNLNEIKLSTWLVQRQDPALYGFSGRSNKLVDGC 255

Query: 270 YSFWQGG 276
           YS+W G 
Sbjct: 256 YSWWVGA 262

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1 SV=2

 Score =  177 bits (450), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 110/290 (37%), Positives = 169/290 (58%), Gaps = 13/290 (4%)

Query: 1   MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQ-Q 59
           ++P  +   T T   +  VL  V  +Y     + P        L ++ H  YL    +  
Sbjct: 42  IQPLMKELETDTTEARYKVLQSVLEIYDDEKNIEP-------ALTKEFHKMYLDVAFEIS 94

Query: 60  LGPSFCSLDANRPWICYWILHSMALLG-EFVDADLEDRTIEFLSRCQDPNGGYGGGPGQM 118
           L P   +LDA++PW+ YWI +S+ ++  +++  D + + ++ L       G +GGGPGQ+
Sbjct: 95  LPPQMTALDASQPWMLYWIANSLKVMDRDWLSDDTKRKIVDKLFTISPSGGPFGGGPGQL 154

Query: 119 PHLATTYAAVNAL-ISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM-HDAGEIDVRACY 176
            HLA+TYAA+NAL +    +     I+R  +Y +L  +K+P+G F+   + GE+D R  Y
Sbjct: 155 SHLASTYAAINALSLCDNIDGCWDRIDRKGIYQWLISLKEPNGGFKTCLEVGEVDTRGIY 214

Query: 177 TAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPG-SEAHGGYTFCGLAAMILINE 235
            A+S+A++LNIL +EL + V NY+ +CQ YEGG    P   EAHGGYTFC  A++ ++  
Sbjct: 215 CALSIATLLNILTEELTEGVLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAILRS 274

Query: 236 ADRLDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRF 284
            D+++++ L+ W   RQ   E GF GR+NKLVDGCYSFW GG  A+L  F
Sbjct: 275 MDQINVEKLLEWSSARQLQEERGFCGRSNKLVDGCYSFWVGGSAAILEAF 324

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins such as a-factor and RAS. The beta subunit is responsible for peptide-binding.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1

 Score =  128 bits (322), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 122/250 (48%), Gaps = 25/250 (10%)

Query: 49  HVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEF-----------VDADLEDRT 97
           HVEY+++    LG    S +       YW+   + + G +           +D   ++  
Sbjct: 27  HVEYIVK----LGSKKDSFE-------YWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEV 75

Query: 98  IEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD 157
           I++L  CQ  NGG+GG      HL +T +AV  LI      +L  I+ + V  ++  ++ 
Sbjct: 76  IQWLLSCQKSNGGFGGNTSHDDHLLSTLSAVQILIQY---DALDKIDINSVVDYVVKLQR 132

Query: 158 PSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSE 217
             G+F     GE+D R  Y AI   S+L  LD    +    YILSCQ ++GG    PG+E
Sbjct: 133 EDGSFVGDQWGEVDTRFSYAAIMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAE 192

Query: 218 AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV 277
           +H G  F  + A+ ++NE +++D+D L  W+  RQ   GG  GR  K  D CYS+W    
Sbjct: 193 SHAGQIFTCVGALSILNEINKIDIDKLGWWLSERQLPNGGLNGRPEKSSDVCYSWWVLSA 252

Query: 278 FALLRRFHSI 287
            + + R H I
Sbjct: 253 LSAIDRLHWI 262

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
225452468	438	PREDICTED: protein farnesyltransferase s	0.964	0.796	0.690	1e-132
356516702	455	PREDICTED: protein farnesyltransferase s	0.955	0.760	0.624	1e-131
356548601	455	PREDICTED: protein farnesyltransferase s	0.966	0.769	0.648	1e-130
255552586	438	protein farnesyltransferase beta subunit	0.969	0.801	0.664	1e-130
296087672	421	unnamed protein product [Vitis vinifera]	0.941	0.809	0.685	1e-129
449446662	428	PREDICTED: protein farnesyltransferase s	0.964	0.815	0.638	1e-118
417482	419	RecName: Full=Protein farnesyltransferas	0.867	0.749	0.588	1e-117
242058625	451	hypothetical protein SORBIDRAFT_03g03400	0.972	0.780	0.577	1e-113
1732587	446	farnesyltransferase beta subunit, partia	0.961	0.780	0.598	1e-111
33306338	455	farnesyltransferase beta subunit [Cathar	0.969	0.771	0.568	1e-110

>gi|225452468|ref|XP_002278403.1| PREDICTED: protein farnesyltransferase subunit beta-like isoform 1 [Vitis vinifera]

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 245/355 (69%), Positives = 290/355 (81%), Gaps = 6/355 (1%)

Query: 10  TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
           TVTQREQ MV + V  +Y + ++VP  AQ++++ELQR  H+E+L  GL+QLGPSFC LDA
Sbjct: 10  TVTQREQWMVESQVFQMYELLSSVPRNAQSVLLELQRDKHIEFLTNGLRQLGPSFCVLDA 69

Query: 70  NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVN 129
           NRPW+CYWILHS+ALLG+ VD +LE+ TI+FLSRCQDPNGGYGGGPGQMPHLATTYAA+N
Sbjct: 70  NRPWLCYWILHSIALLGDSVDDELENNTIDFLSRCQDPNGGYGGGPGQMPHLATTYAAIN 129

Query: 130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
           ALI+LGG +SL SINR KVYTFL+ MKDPSGAFRMHDAGE+DVRACYTAISVAS+L ILD
Sbjct: 130 ALITLGGHRSLSSINRGKVYTFLRRMKDPSGAFRMHDAGEMDVRACYTAISVASVLTILD 189

Query: 190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
           DEL++ VGN+ILSCQTYEGGI+GEPGSEAHGGYTFCGLA M+LI E +RLDL +LI WVV
Sbjct: 190 DELVKGVGNFILSCQTYEGGISGEPGSEAHGGYTFCGLATMVLIGEVNRLDLTSLIDWVV 249

Query: 250 FRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQT 309
           FRQGVEGGFQGRTNKLVDGCYSFWQGGVFAL+++ HSII E    +D  G+  +ID+ Q 
Sbjct: 250 FRQGVEGGFQGRTNKLVDGCYSFWQGGVFALIQKLHSIIEEQLRLLDAGGS--AIDSPQL 307

Query: 310 TTASDVSEGDGSSDEISSQGDEHCHF----QHREREPLFHSIALQRYLLLCSQVQ 360
            + S  S   G  D   S    +  F    +  E EPLFHSIALQ+Y++LCSQ+Q
Sbjct: 308 ASISCHSGKRGLHDTSGSAKFSNIGFNFLKEPAEMEPLFHSIALQQYIILCSQLQ 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516702|ref|XP_003527032.1| PREDICTED: protein farnesyltransferase subunit beta-like [Glycine max]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/386 (62%), Positives = 280/386 (72%), Gaps = 40/386 (10%)

Query: 2   EPDTEPRG-----TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRG 56
           E DT P       TV+QR+Q MV + V  +Y ++AT+P  AQ LM+ELQR NH++YL +G
Sbjct: 6   ERDTNPAAAPPCPTVSQRDQWMVESQVFQIYQLFATIPGSAQNLMLELQRDNHMQYLSKG 65

Query: 57  LQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPG 116
           L+ L  +F  LDANRPW+CYWI HS+ALLGE VD +LED TI+FL+RCQDPNGGY GGPG
Sbjct: 66  LRHLSSAFSVLDANRPWLCYWIFHSIALLGESVDDELEDNTIDFLNRCQDPNGGYAGGPG 125

Query: 117 QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACY 176
           QMPH+ATTYAAVN LI+LGG+KSL SINR K+Y FL+ MK  +G FRMHD GEIDVRACY
Sbjct: 126 QMPHIATTYAAVNTLITLGGQKSLASINRDKLYGFLRRMKQSNGGFRMHDEGEIDVRACY 185

Query: 177 TAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA 236
           TAISVAS+LNILDDEL++NVG+YILSCQTYEGGIAGEPGSEAHGGYTFCGLA MILI E 
Sbjct: 186 TAISVASVLNILDDELIKNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLATMILIGEV 245

Query: 237 DRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVD 296
           +RLDL  L+ W VFRQG E GFQGRTNKLVDGCYSFWQGG  ALL+R  SII +      
Sbjct: 246 NRLDLPRLVEWAVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLSSIINKQME--- 302

Query: 297 QRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQH------------------- 337
                   + +QT T SDVSE   S D  SS     CH +H                   
Sbjct: 303 --------EASQTFTISDVSEAKESLDGTSSHAT--CHGKHEGTSQSCSADYKSIGYNFI 352

Query: 338 ---REREPLFHSIALQRYLLLCSQVQ 360
              R +EPLFHSIALQ+Y+LLC+Q Q
Sbjct: 353 NEWRAQEPLFHSIALQQYILLCAQEQ 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548601|ref|XP_003542689.1| PREDICTED: protein farnesyltransferase subunit beta [Glycine max]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/361 (64%), Positives = 280/361 (77%), Gaps = 11/361 (3%)

Query: 10  TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
           TV+QREQ MV + V  +Y ++AT+P  AQTLM+ELQR NH++Y+ +GL+ L  +F  LDA
Sbjct: 19  TVSQREQWMVESQVFQIYQLFATIPRNAQTLMLELQRDNHMQYVSKGLRHLSSAFSVLDA 78

Query: 70  NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVN 129
           NRPW+CYWI HS+AL GE VD +LED  I+FL+RCQDPNGGY GGPGQMPH+ATTYAAVN
Sbjct: 79  NRPWLCYWIFHSIALSGESVDDELEDNAIDFLNRCQDPNGGYAGGPGQMPHIATTYAAVN 138

Query: 130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
           +LI+LGGEKSL SINR K+Y FL+ MK P+G FRMHD GEIDVRACYTAISVAS+LNILD
Sbjct: 139 SLITLGGEKSLASINRDKLYGFLRRMKQPNGGFRMHDEGEIDVRACYTAISVASVLNILD 198

Query: 190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
           DEL+QNVG+YI+SCQTYEGGIAGEPGSEAHGGYTFCGLA MILI E + LDL  L+ WVV
Sbjct: 199 DELIQNVGDYIISCQTYEGGIAGEPGSEAHGGYTFCGLATMILIGEVNHLDLPRLVDWVV 258

Query: 250 FRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ-------RGAEC 302
           FRQG E GFQGRTNKLVDGCYSFWQGG  ALL+R  SII +      Q         A+ 
Sbjct: 259 FRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLSSIINKQMEETSQIFAVSYVSEAKE 318

Query: 303 SIDNTQTTTASDVSEGDGSSDEISSQGDEHCHF---QHREREPLFHSIALQRYLLLCSQV 359
           S+D T ++ A+   E +G+S+  SS      +    + R +EPLFHSIALQ+Y+LLC+Q 
Sbjct: 319 SLDGT-SSHATCRGEHEGTSESSSSDFKNIAYKFINEWRAQEPLFHSIALQQYILLCAQE 377

Query: 360 Q 360
           Q
Sbjct: 378 Q 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552586|ref|XP_002517336.1| protein farnesyltransferase beta subunit, putative [Ricinus communis] gi|223543347|gb|EEF44878.1| protein farnesyltransferase beta subunit, putative [Ricinus communis]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/364 (66%), Positives = 289/364 (79%), Gaps = 13/364 (3%)

Query: 1   MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQL 60
           +E  +  R T +Q EQ +V + V  +Y I+A +P  AQTLM+ELQR  H+EYL RGL+QL
Sbjct: 4   VESSSRRRATASQHEQWIVQDQVFQIYDIFANIPHKAQTLMLELQRDKHMEYLTRGLKQL 63

Query: 61  GPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH 120
             SFC LDANRPW+CYWILHS+ALLGE +D +LE+  I+FL+RCQDPNGG+GGGPGQ+PH
Sbjct: 64  SSSFCVLDANRPWLCYWILHSIALLGESIDYELENNAIDFLNRCQDPNGGFGGGPGQLPH 123

Query: 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAIS 180
           LATTYAAVN+L++LGG ++L SINR K+YTFL+ MKDPSG FRMHDAGEIDVRACYTAIS
Sbjct: 124 LATTYAAVNSLVTLGGPRALSSINRGKLYTFLRRMKDPSGPFRMHDAGEIDVRACYTAIS 183

Query: 181 V-ASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL 239
           V A+ILNILDDEL+++VGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLA MILINE +RL
Sbjct: 184 VCANILNILDDELVRDVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLATMILINEVNRL 243

Query: 240 DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRG 299
           DL +LI WVVFRQGVE GFQGRTNKLVDGCYSFWQGGVFALL+R  SI GE     D   
Sbjct: 244 DLSSLINWVVFRQGVECGFQGRTNKLVDGCYSFWQGGVFALLQRLRSIGGEHAAFSDAEA 303

Query: 300 AECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQ---HREREPLFHSIALQRYLLLC 356
             C+   T++++  + ++GD      S+  DE  HF+   H    PLFHS ALQ+Y++LC
Sbjct: 304 GHCA---TESSSEDEGTDGD------STDVDEPGHFKQGGHGVTVPLFHSSALQQYIILC 354

Query: 357 SQVQ 360
           SQ Q
Sbjct: 355 SQEQ 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087672|emb|CBI34928.3| unnamed protein product [Vitis vinifera]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/347 (68%), Positives = 283/347 (81%), Gaps = 6/347 (1%)

Query: 18  MVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYW 77
           MV + V  +Y + ++VP  AQ++++ELQR  H+E+L  GL+QLGPSFC LDANRPW+CYW
Sbjct: 1   MVESQVFQMYELLSSVPRNAQSVLLELQRDKHIEFLTNGLRQLGPSFCVLDANRPWLCYW 60

Query: 78  ILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGE 137
           ILHS+ALLG+ VD +LE+ TI+FLSRCQDPNGGYGGGPGQMPHLATTYAA+NALI+LGG 
Sbjct: 61  ILHSIALLGDSVDDELENNTIDFLSRCQDPNGGYGGGPGQMPHLATTYAAINALITLGGH 120

Query: 138 KSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVG 197
           +SL SINR KVYTFL+ MKDPSGAFRMHDAGE+DVRACYTAISVAS+L ILDDEL++ VG
Sbjct: 121 RSLSSINRGKVYTFLRRMKDPSGAFRMHDAGEMDVRACYTAISVASVLTILDDELVKGVG 180

Query: 198 NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGG 257
           N+ILSCQTYEGGI+GEPGSEAHGGYTFCGLA M+LI E +RLDL +LI WVVFRQGVEGG
Sbjct: 181 NFILSCQTYEGGISGEPGSEAHGGYTFCGLATMVLIGEVNRLDLTSLIDWVVFRQGVEGG 240

Query: 258 FQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSE 317
           FQGRTNKLVDGCYSFWQGGVFAL+++ HSII E    +D  G+  +ID+ Q  + S  S 
Sbjct: 241 FQGRTNKLVDGCYSFWQGGVFALIQKLHSIIEEQLRLLDAGGS--AIDSPQLASISCHSG 298

Query: 318 GDGSSDEISSQGDEHCHF----QHREREPLFHSIALQRYLLLCSQVQ 360
             G  D   S    +  F    +  E EPLFHSIALQ+Y++LCSQ+Q
Sbjct: 299 KRGLHDTSGSAKFSNIGFNFLKEPAEMEPLFHSIALQQYIILCSQLQ 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446662|ref|XP_004141090.1| PREDICTED: protein farnesyltransferase subunit beta-like [Cucumis sativus]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/362 (63%), Positives = 270/362 (74%), Gaps = 13/362 (3%)

Query: 1   MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQL 60
           ME     + T TQ+ Q MV  +V  +Y  +   P  AQ  M+ELQR+NH+EYL  GL  L
Sbjct: 1   MEAPVLEKLTETQQNQRMVEYEVARIYDFFLRAPRSAQEFMLELQRENHIEYLTNGLNHL 60

Query: 61  GPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH 120
           GPSF  LDANRPWICYWILHS+ALLG+ VDA+LE R I+FL+RCQD +GGYGGGPGQ+PH
Sbjct: 61  GPSFRVLDANRPWICYWILHSIALLGDSVDAELEARAIDFLNRCQDSSGGYGGGPGQLPH 120

Query: 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAIS 180
           LATTYAAVN+L++LG  ++L SINR K+YTFL  MK PSG FRMHD GEIDVRACYTAIS
Sbjct: 121 LATTYAAVNSLVTLGSHEALSSINRHKLYTFLLQMKHPSGGFRMHDQGEIDVRACYTAIS 180

Query: 181 VASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD 240
           VASILNILDDEL+QNVGNYI SCQT+EGGIAGEPGSEAHGGYTFCGLA +ILINE  RLD
Sbjct: 181 VASILNILDDELVQNVGNYIQSCQTFEGGIAGEPGSEAHGGYTFCGLATLILINEVHRLD 240

Query: 241 LDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRG 299
           L +L+ WVVFRQ G+E GFQGRTNKLVDGCYSFWQGGV +LL+R    I E     D R 
Sbjct: 241 LRSLLDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCSLLKRLSLDIDEQSVQPDARE 300

Query: 300 AECSIDNTQT--TTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCS 357
              S DN  T   T+  V+  D   + I          +H   +PLF+S+ALQ+Y+LLC+
Sbjct: 301 GS-SFDNLSTGADTSRKVNYNDVGYEFIE---------KHPSSQPLFNSLALQQYILLCA 350

Query: 358 QV 359
           QV
Sbjct: 351 QV 352

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|417482|sp|Q04903.1|FNTB_PEA RecName: Full=Protein farnesyltransferase subunit beta; Short=FTase-beta; AltName: Full=CAAX farnesyltransferase subunit beta; AltName: Full=Ras proteins prenyltransferase subunit beta gi|169049|gb|AAA33649.1| farnesyl-protein transferase beta-subunit [Pisum sativum]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/374 (58%), Positives = 259/374 (69%), Gaps = 60/374 (16%)

Query: 7   PRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           P  TV+QR+Q +V + V  +Y ++A +PP AQ+++                         
Sbjct: 10  PTPTVSQRDQWIVESQVFHIYQLFANIPPNAQSII------------------------- 44

Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYA 126
               RPW+CYWI+HS+ALLGE +D DLED T++FL+RCQDPNGGY GGPGQMPHLATTYA
Sbjct: 45  ----RPWLCYWIIHSIALLGESIDDDLEDNTVDFLNRCQDPNGGYAGGPGQMPHLATTYA 100

Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVN LI+LGGEKSL SINR+K+Y F++ MK P+G FRMHD GEIDVRACYTAISVAS+LN
Sbjct: 101 AVNTLITLGGEKSLASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYTAISVASVLN 160

Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           ILDDEL++NVG++ILSCQTYEGG+AGEPGSEAHGGYTFCGLAAMILI E +RLDL  L+ 
Sbjct: 161 ILDDELIKNVGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLLD 220

Query: 247 WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDN 306
           WVVFRQG E GFQGRTNKLVDGCYSFWQGG  ALL+R HSII       D++ AE S   
Sbjct: 221 WVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHSII-------DEQMAEAS--- 270

Query: 307 TQTTTASDVSEGDGSSDEISSQGDEHCHF--------------------QHREREPLFHS 346
            Q  T SD  E     D  SS    H                       + R+ EPLFHS
Sbjct: 271 -QFVTVSDAPEEKECLDGTSSHATSHIRHEGMNESCSSDVKNIGYNFISEWRQSEPLFHS 329

Query: 347 IALQRYLLLCSQVQ 360
           IALQ+Y+LLCSQ Q
Sbjct: 330 IALQQYILLCSQEQ 343

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242058625|ref|XP_002458458.1| hypothetical protein SORBIDRAFT_03g034000 [Sorghum bicolor] gi|241930433|gb|EES03578.1| hypothetical protein SORBIDRAFT_03g034000 [Sorghum bicolor]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/353 (57%), Positives = 258/353 (73%), Gaps = 1/353 (0%)

Query: 7   PRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           PR TVTQ EQ  V   V  +Y   +   P  +++M+EL R  H+EYL RGL+ LGP+F  
Sbjct: 23  PRLTVTQVEQMKVEARVGDIYRALSGAAPNTKSIMLELWRDQHIEYLTRGLRHLGPAFHV 82

Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYA 126
           LDANRPW+CYW++H +ALL E +D +LED  I+FL+RCQD +GGY GGPGQ+PHLATTYA
Sbjct: 83  LDANRPWLCYWMVHPLALLDEALDDNLEDDIIDFLARCQDKDGGYSGGPGQLPHLATTYA 142

Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVN L+++G E++L SINR  +Y F+  MKD SGAFRMHD GEIDVRA YTAISVAS++N
Sbjct: 143 AVNTLVTIGSERALSSINRGNLYKFMLRMKDVSGAFRMHDGGEIDVRASYTAISVASLVN 202

Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           ILD EL + VG+YI SCQTYEGGIAGEP +EAHGGYTFCGLAA+IL+NEA+++DL +LIG
Sbjct: 203 ILDVELAKGVGDYIASCQTYEGGIAGEPYAEAHGGYTFCGLAALILLNEAEKVDLPSLIG 262

Query: 247 WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDN 306
           WV FRQGVE GFQGRTNKLVDGCYSFWQG   AL ++  +I+ +              D 
Sbjct: 263 WVAFRQGVECGFQGRTNKLVDGCYSFWQGAAIALTQKLLTIVDKQLKSSYSCKRPSGGDA 322

Query: 307 TQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQV 359
             T++    ++   S+ + +  G +    Q  +  PLFH+IALQ+Y+LLCSQV
Sbjct: 323 CSTSSYGCTAKNFSSAVDYAKVGFDFIQ-QSNQIGPLFHNIALQQYILLCSQV 374

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1732587|gb|AAB38796.1| farnesyltransferase beta subunit, partial [Nicotiana glutinosa]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/369 (59%), Positives = 268/369 (72%), Gaps = 21/369 (5%)

Query: 9   GTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLD 68
           GT T  +Q MV   V  +Y+ + ++PP +    +E   + H +YL RGL++LGPSF  LD
Sbjct: 4   GTRTLEDQWMVERQVREIYNFFYSIPPNSH---LETSTEKHFDYLTRGLRKLGPSFSVLD 60

Query: 69  ANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAV 128
           ANRPW+CYWILHS+ALLGE +DA LE+  I+FLSRCQD +GGYGGGPGQMPHLATTYAAV
Sbjct: 61  ANRPWLCYWILHSIALLGESIDAQLENDAIDFLSRCQDEDGGYGGGPGQMPHLATTYAAV 120

Query: 129 NALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL 188
           N+LI+LG  K+L SINR K+YTF   MKD SG FRMHD GE+DVRACYTAISVASIL I+
Sbjct: 121 NSLITLGSPKALSSINREKLYTFWLQMKDTSGGFRMHDGGEVDVRACYTAISVASILQIV 180

Query: 189 DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWV 248
           DDEL+ +VGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA+RLDL  LI WV
Sbjct: 181 DDELINDVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEANRLDLPRLIDWV 240

Query: 249 VFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQ 308
           VFRQGVEGGFQGRTNKLVDGCYSFWQ  V  L++R  S + E     ++   E + D+++
Sbjct: 241 VFRQGVEGGFQGRTNKLVDGCYSFWQAAVAFLIQRLKSTVHEQLGLSNELSTESADDSSE 300

Query: 309 TT---------TASDV-------SEGDGSSDEISSQGDEHCHFQHRE--REPLFHSIALQ 350
           +          T+S V        EG  ++ + +   D    F +R     P+F S  LQ
Sbjct: 301 SELSDEEHLQGTSSHVQKTCPLGQEGQENASDPTKIADTGYDFVNRTIAMRPVFDSFYLQ 360

Query: 351 RYLLLCSQV 359
           +Y+LLCSQ+
Sbjct: 361 QYVLLCSQI 369

Source: Nicotiana glutinosa

Species: Nicotiana glutinosa

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33306338|gb|AAQ02809.1|AF389849_1 farnesyltransferase beta subunit [Catharanthus roseus] gi|47933946|gb|AAT39532.1| farnesyltransferase beta subunit [Catharanthus roseus]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/373 (56%), Positives = 267/373 (71%), Gaps = 22/373 (5%)

Query: 8   RGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSL 67
           +GT TQ +Q M+ + V  +Y  + ++PP AQ   +ELQR NH+EYL  GL++LGPSF  L
Sbjct: 7   KGTKTQEDQWMLNHKVYTIYSQFHSLPPNAQAAYLELQRDNHIEYLTNGLKKLGPSFTVL 66

Query: 68  DANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAA 127
           DANRPW+CYWILH +A++G+ VD +L + TI+FL RCQDP+GGYGGGPGQ+PHLATTYAA
Sbjct: 67  DANRPWLCYWILHPIAVMGDCVDEELANNTIDFLRRCQDPDGGYGGGPGQLPHLATTYAA 126

Query: 128 VNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI 187
           VN+LI+LGGEKSL SI+R KVY+FL  MKD SG FRMHD GE+DVRACYTAISVAS+LNI
Sbjct: 127 VNSLITLGGEKSLSSIDRGKVYSFLLRMKDASGGFRMHDGGELDVRACYTAISVASVLNI 186

Query: 188 LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGW 247
           LDD+L++N+G+YI SCQTYEGGIAGEPGSEAHGGY FCGLAA+ILI+E  RLDL  LI W
Sbjct: 187 LDDKLVKNLGDYISSCQTYEGGIAGEPGSEAHGGYAFCGLAALILIDEVHRLDLPRLIDW 246

Query: 248 VVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNT 307
           +VFRQG EGGFQGRTNKLVDGCYSFWQG V  ++++  S++ +     +        ++ 
Sbjct: 247 LVFRQGWEGGFQGRTNKLVDGCYSFWQGAVAVMIQKLDSVLAKQLGVPNAGDWGYYSESD 306

Query: 308 QTTTASDVSEGDGSSDEISSQGDEHCHFQHRERE----------------------PLFH 345
             + ASD S+    ++  S      C+    E                         LF+
Sbjct: 307 HDSAASDQSDVQEFAERTSEPNGVACNLNQEEDNDSPSANLTDAGYNFISKRTAIGSLFN 366

Query: 346 SIALQRYLLLCSQ 358
           S+ LQ+Y+LLCSQ
Sbjct: 367 SMLLQQYILLCSQ 379

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
TAIR|locus:2173802	482	ERA1 "ENHANCED RESPONSE TO ABA	0.966	0.726	0.561	1.1e-101
ZFIN|ZDB-GENE-030131-2220	419	fntb "farnesyltransferase, CAA	0.748	0.646	0.494	1.4e-70
UNIPROTKB|P49355	437	FNTB "Protein farnesyltransfer	0.748	0.620	0.483	3.7e-70
MGI|MGI:1861305	437	Fntb "farnesyltransferase, CAA	0.748	0.620	0.48	2.6e-69
RGD|620119	437	Fntb "farnesyltransferase, CAA	0.748	0.620	0.48	3.3e-69
UNIPROTKB|Q02293	437	Fntb "Protein farnesyltransfer	0.748	0.620	0.48	3.3e-69
UNIPROTKB|F1Q0W7	437	FNTB "Uncharacterized protein"	0.740	0.613	0.489	4.2e-69
UNIPROTKB|P49356	437	FNTB "Protein farnesyltransfer	0.748	0.620	0.48	4.2e-69
UNIPROTKB|B4DL54	471	CHURC1-FNTB "cDNA FLJ59570, hi	0.662	0.509	0.518	3.7e-68
UNIPROTKB|B4E1A0	391	CHURC1-FNTB "cDNA FLJ58825, hi	0.662	0.613	0.518	3.7e-68

TAIR|locus:2173802 ERA1 "ENHANCED RESPONSE TO ABA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 201/358 (56%), Positives = 247/358 (68%)

Query:    10 TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
             TV+QREQ +V NDV  +Y+ +       Q  MME+QR   ++YL++GL+QLGP F SLDA
Sbjct:    47 TVSQREQFLVENDVFGIYNYFDASDVSTQKYMMEIQRDKQLDYLMKGLRQLGPQFSSLDA 106

Query:    70 NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYAAVN 129
             NRPW+CYWILHS+ALLGE VD +LE   I+FL RCQ           Q+PHLATTYAAVN
Sbjct:   107 NRPWLCYWILHSIALLGETVDDELESNAIDFLGRCQGSEGGYGGGPGQLPHLATTYAAVN 166

Query:   130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
             AL++LGG+K+L SINR K+  FL+ MKD SG FRMHD GE+DVRACYTAISVASILNI+D
Sbjct:   167 ALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEMDVRACYTAISVASILNIMD 226

Query:   190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
             DEL Q +G+YILSCQTYEGGI GEPGSEAHGGYT+CGLAAMILINE DRL+LD+L+ W V
Sbjct:   227 DELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRLNLDSLMNWAV 286

Query:   250 FRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRF-----HSIIGESPTP--VDQRGAEC 302
              RQGVE GFQGRTNKLVDGCY+FWQ     LL+R      H + G S      ++     
Sbjct:   287 HRQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLYSTNDHDVHGSSHISEGTNEEHHAH 346

Query:   303 SIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCH-FQHREREPLFHSIALQRYLLLCSQV 359
               D+ + +                     H   + +R  + +F S+ LQRY+LLCS++
Sbjct:   347 DEDDLEDSDDDDDSDEDNDEDSVNGHRIHHTSTYINRRMQLVFDSLGLQRYVLLCSKI 404

GO:0003824 "catalytic activity" evidence=IEA

GO:0004660 "protein farnesyltransferase activity" evidence=IMP

GO:0005965 "protein farnesyltransferase complex" evidence=IMP

GO:0018342 "protein prenylation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0004311 "farnesyltranstransferase activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009934 "regulation of meristem structural organization" evidence=IMP

ZFIN|ZDB-GENE-030131-2220 fntb "farnesyltransferase, CAAX box, beta" [Danio rerio (taxid:7955)]

 Score = 686 (246.5 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
 Identities = 136/275 (49%), Positives = 173/275 (62%)

Query:    10 TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
             TVT REQ  V   +  +Y +Y  +    Q  ++   R+ H  YL +GL+ L  ++  LDA
Sbjct:    27 TVTSREQRKVERSIQEVYSVYQQIHTSPQPALL---REQHYHYLKKGLRHLSDAYECLDA 83

Query:    70 NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYAAVN 129
             +RPW+CYWILHS+ LL E V A +     +FL+RCQ P         Q  HLA TYAAVN
Sbjct:    84 SRPWLCYWILHSLELLEEPVPAAVASDVCQFLARCQAPTGGFGGGPGQQAHLAPTYAAVN 143

Query:   130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
             AL  LG E++   INR  +  FL  +K P G+F MH  GE+DVR+ Y A SVAS+ NI+ 
Sbjct:   144 ALCILGTEEAYNVINRETLLDFLYSVKQPDGSFVMHIGGEVDVRSAYCAASVASLTNIIA 203

Query:   190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
               L     N+I+SCQ +EGG+ G PG EAHGGYTFCG AA++++ +   LDL AL+ WV 
Sbjct:   204 PTLFDGTHNWIISCQNWEGGLGGVPGLEAHGGYTFCGTAALVILGKEHMLDLKALLRWVT 263

Query:   250 FRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
              RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct:   264 SRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 298

GO:0003824 "catalytic activity" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|P49355 FNTB "Protein farnesyltransferase subunit beta" [Bos taurus (taxid:9913)]

 Score = 675 (242.7 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
 Identities = 133/275 (48%), Positives = 174/275 (63%)

Query:    10 TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
             TVT  EQ+ V   +  ++  Y     + + +   LQR+ H  YL RGL+QL  ++  LDA
Sbjct:    42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV---LQREKHFHYLKRGLRQLTDAYECLDA 98

Query:    70 NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYAAVN 129
             +RPW+CYWILHS+ LL E +   +     +FL  CQ P         Q PHLA TYAAVN
Sbjct:    99 SRPWLCYWILHSLELLDEPIPQMVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVN 158

Query:   130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
             AL  +G E++   INR K+  +L  +K P G+F MHD GE+DVR+ Y A SVAS+ NI+ 
Sbjct:   159 ALCIIGTEEAYDVINREKLLQYLYSLKQPDGSFLMHDGGEVDVRSAYCAASVASLTNIIT 218

Query:   190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
              +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ WV 
Sbjct:   219 PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVT 278

Query:   250 FRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
              RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct:   279 SRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA

GO:0042060 "wound healing" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0004311 "farnesyltranstransferase activity" evidence=IEA

GO:0004660 "protein farnesyltransferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

MGI|MGI:1861305 Fntb "farnesyltransferase, CAAX box, beta" [Mus musculus (taxid:10090)]

 Score = 667 (239.9 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
 Identities = 132/275 (48%), Positives = 174/275 (63%)

Query:    10 TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
             TVT  EQ+ V   +  ++  Y     + + +   LQR+ H  YL RGL+QL  ++  LDA
Sbjct:    42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLI---LQREKHFHYLKRGLRQLTDAYECLDA 98

Query:    70 NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYAAVN 129
             +RPW+CYWILHS+ LL E +   +     +FL  CQ P+        Q PHLA TYAAVN
Sbjct:    99 SRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVN 158

Query:   130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
             AL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ NI+ 
Sbjct:   159 ALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIIT 218

Query:   190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
              +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ WV 
Sbjct:   219 PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVT 278

Query:   250 FRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
              RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct:   279 SRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

GO:0003824 "catalytic activity" evidence=IEA

GO:0004311 "farnesyltranstransferase activity" evidence=IMP

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0004660 "protein farnesyltransferase activity" evidence=ISO

GO:0005875 "microtubule associated complex" evidence=ISO

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

GO:0008144 "drug binding" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA;IMP

GO:0008270 "zinc ion binding" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO;IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0010035 "response to inorganic substance" evidence=ISO

GO:0014070 "response to organic cyclic compound" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018343 "protein farnesylation" evidence=ISO

GO:0019840 "isoprenoid binding" evidence=ISO

GO:0034097 "response to cytokine stimulus" evidence=ISO

GO:0042060 "wound healing" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0042277 "peptide binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045787 "positive regulation of cell cycle" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IMP

GO:0051770 "positive regulation of nitric-oxide synthase biosynthetic process" evidence=ISO

RGD|620119 Fntb "farnesyltransferase, CAAX box, beta" [Rattus norvegicus (taxid:10116)]

 Score = 666 (239.5 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
 Identities = 132/275 (48%), Positives = 174/275 (63%)

Query:    10 TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
             TVT  EQ+ V   +  ++  Y     + + +   LQR+ H  YL RGL+QL  ++  LDA
Sbjct:    42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV---LQREKHFHYLKRGLRQLTDAYECLDA 98

Query:    70 NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYAAVN 129
             +RPW+CYWILHS+ LL E +   +     +FL  CQ P+        Q PHLA TYAAVN
Sbjct:    99 SRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVN 158

Query:   130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
             AL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ NI+ 
Sbjct:   159 ALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIIT 218

Query:   190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
              +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ WV 
Sbjct:   219 PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVT 278

Query:   250 FRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
              RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct:   279 SRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

GO:0004311 "farnesyltranstransferase activity" evidence=IEA;ISO

GO:0004660 "protein farnesyltransferase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005875 "microtubule associated complex" evidence=ISO

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

GO:0008152 "metabolic process" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO;IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IEA;ISO

GO:0010035 "response to inorganic substance" evidence=IMP

GO:0014070 "response to organic cyclic compound" evidence=IMP

GO:0018343 "protein farnesylation" evidence=IEA;ISO

GO:0034097 "response to cytokine stimulus" evidence=IMP

GO:0042060 "wound healing" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IDA

GO:0045787 "positive regulation of cell cycle" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0051770 "positive regulation of nitric-oxide synthase biosynthetic process" evidence=IMP

GO:0008144 "drug binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0019840 "isoprenoid binding" evidence=IDA

GO:0042277 "peptide binding" evidence=IDA

UNIPROTKB|Q02293 Fntb "Protein farnesyltransferase subunit beta" [Rattus norvegicus (taxid:10116)]

 Score = 666 (239.5 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
 Identities = 132/275 (48%), Positives = 174/275 (63%)

Query:    10 TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
             TVT  EQ+ V   +  ++  Y     + + +   LQR+ H  YL RGL+QL  ++  LDA
Sbjct:    42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV---LQREKHFHYLKRGLRQLTDAYECLDA 98

Query:    70 NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYAAVN 129
             +RPW+CYWILHS+ LL E +   +     +FL  CQ P+        Q PHLA TYAAVN
Sbjct:    99 SRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVN 158

Query:   130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
             AL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ NI+ 
Sbjct:   159 ALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIIT 218

Query:   190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
              +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ WV 
Sbjct:   219 PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVT 278

Query:   250 FRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
              RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct:   279 SRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1Q0W7 FNTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 665 (239.2 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
 Identities = 136/278 (48%), Positives = 173/278 (62%)

Query:    10 TVTQREQSMV---LNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
             TVT  EQ+ V   + DV   Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct:    42 TVTSVEQAKVEEKIQDVFSSYKFNHLVPRLI------LQREKHFHYLKRGLRQLTDAYEC 95

Query:    67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
             LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P         Q PHLA TYA
Sbjct:    96 LDASRPWLCYWILHSLELLDEPIPQMVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYA 155

Query:   127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
             AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct:   156 AVNALCIIGTEEAYGVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215

Query:   187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
             I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ 
Sbjct:   216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERYLNLKSLLQ 275

Query:   247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
             WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct:   276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA

GO:0042060 "wound healing" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0004311 "farnesyltranstransferase activity" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

UNIPROTKB|P49356 FNTB "Protein farnesyltransferase subunit beta" [Homo sapiens (taxid:9606)]

 Score = 665 (239.2 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
 Identities = 132/275 (48%), Positives = 172/275 (62%)

Query:    10 TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
             TVT  EQ+ V   +  ++  Y     + + +   LQR+ H  YL RGL+QL  ++  LDA
Sbjct:    42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV---LQREKHFHYLKRGLRQLTDAYECLDA 98

Query:    70 NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYAAVN 129
             +RPW+CYWILHS+ LL E +   +     +FL  CQ P         Q PHLA TYAAVN
Sbjct:    99 SRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVN 158

Query:   130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
             AL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ NI+ 
Sbjct:   159 ALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIIT 218

Query:   190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
              +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++     L+L +L+ WV 
Sbjct:   219 PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVT 278

Query:   250 FRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
              RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct:   279 SRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0018343 "protein farnesylation" evidence=IDA

GO:0004660 "protein farnesyltransferase activity" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|B4DL54 CHURC1-FNTB "cDNA FLJ59570, highly similar to Protein farnesyltransferase subunit beta (EC 2.5.1.58)" [Homo sapiens (taxid:9606)]

 Score = 656 (236.0 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
 Identities = 125/241 (51%), Positives = 158/241 (65%)

Query:    44 LQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSR 103
             LQR+ H  YL RGL+QL  ++  LDA+RPW+CYWILHS+ LL E +   +     +FL  
Sbjct:   107 LQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLEL 166

Query:   104 CQDPNXXXXXXXXQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFR 163
             CQ P         Q PHLA TYAAVNAL  +G E++   INR K+  +L  +K P G+F 
Sbjct:   167 CQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFL 226

Query:   164 MHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYT 223
             MH  GE+DVR+ Y A SVAS+ NI+  +L +    +I  CQ +EGGI G PG EAHGGYT
Sbjct:   227 MHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYT 286

Query:   224 FCGLAAMILINEADRLDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLR 282
             FCGLAA++++     L+L +L+ WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL 
Sbjct:   287 FCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLH 346

Query:   283 R 283
             R
Sbjct:   347 R 347

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|B4E1A0 CHURC1-FNTB "cDNA FLJ58825, highly similar to Protein farnesyltransferase subunit beta (EC 2.5.1.58)" [Homo sapiens (taxid:9606)]

 Score = 656 (236.0 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
 Identities = 125/241 (51%), Positives = 158/241 (65%)

Query:    44 LQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSR 103
             LQR+ H  YL RGL+QL  ++  LDA+RPW+CYWILHS+ LL E +   +     +FL  
Sbjct:    27 LQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLEL 86

Query:   104 CQDPNXXXXXXXXQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFR 163
             CQ P         Q PHLA TYAAVNAL  +G E++   INR K+  +L  +K P G+F 
Sbjct:    87 CQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFL 146

Query:   164 MHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYT 223
             MH  GE+DVR+ Y A SVAS+ NI+  +L +    +I  CQ +EGGI G PG EAHGGYT
Sbjct:   147 MHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYT 206

Query:   224 FCGLAAMILINEADRLDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLR 282
             FCGLAA++++     L+L +L+ WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL 
Sbjct:   207 FCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLH 266

Query:   283 R 283
             R
Sbjct:   267 R 267

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38920	FNTB_ARATH	2, ., 5, ., 1, ., 5, 8	0.6005	0.9668	0.7261	yes	no
P49355	FNTB_BOVIN	2, ., 5, ., 1, ., 5, 8	0.5107	0.7403	0.6132	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.58	0.914
3rd Layer	2.5.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020744001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (439 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00001930001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (331 aa)				•	•		•		0.864

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	362
PLN02710	439	PLN02710, PLN02710, farnesyltranstransferase subun	0.0
cd02893	299	cd02893, FTase, Protein farnesyltransferase (FTase	1e-146
cd02890	286	cd02890, PTase, Protein prenyltransferase (PTase)	1e-114
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	1e-72
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	3e-56
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	7e-52
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	1e-46
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	5e-41
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	1e-18
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	7e-17
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	9e-15
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	3e-13
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	2e-12
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	6e-10
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	6e-09
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	1e-08
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	2e-07
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	5e-05
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	1e-04
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	2e-04
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	8e-04

>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta

 Score =  582 bits (1502), Expect = 0.0
 Identities = 240/364 (65%), Positives = 286/364 (78%), Gaps = 6/364 (1%)

Query: 1   MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQL 60
                 PR TVTQREQ  V   V  +Y  +A+ PP AQ++M+EL R+ H+EYL RGL+QL
Sbjct: 1   RVSSELPRLTVTQREQWKVEAKVFDIYRSFASAPPNAQSVMLELWREKHLEYLTRGLRQL 60

Query: 61  GPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH 120
           GPSF  LDANRPW+CYWILHS+ALLGE +D +LE+ TI+FLSRCQDPNGGYGGGPGQ+PH
Sbjct: 61  GPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPH 120

Query: 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAIS 180
           LATTYAAVN L+++GGE++L SINR K+YTFL  MKDPSG FRMHD GE+DVRACYTAIS
Sbjct: 121 LATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAIS 180

Query: 181 VASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD 240
           VAS+LNILDDEL++ VG+YILSCQTYEGGI GEPG+EAHGGYTFCGLAAMILINE DRLD
Sbjct: 181 VASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLD 240

Query: 241 LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGE----SPTPVD 296
           L +LI WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL++  +I+ E      + + 
Sbjct: 241 LPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIM 300

Query: 297 QRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLC 356
               E   D  +T+++     GD  S + S  G +     +++  PLFHSIALQ+Y+LLC
Sbjct: 301 FEELED--DACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLC 358

Query: 357 SQVQ 360
           SQV 
Sbjct: 359 SQVL 362

Length = 439

>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  414 bits (1066), Expect = e-146
 Identities = 158/314 (50%), Positives = 194/314 (61%), Gaps = 45/314 (14%)

Query: 46  RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQ 105
           R+ H++YL + L+QL  SF SLDA+RPW+ YWILHS+ LLGE +D    D  I FL RCQ
Sbjct: 1   REKHIKYLKKSLRQLPSSFTSLDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQ 60

Query: 106 DPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMH 165
           +P+GG+GGGPGQ+PHLATTYAAVNAL  +G E++   I+R  +Y FL  +K P G+FRMH
Sbjct: 61  NPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMH 120

Query: 166 DAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFC 225
             GE+DVR  Y AISVAS+LNIL DEL + V  YILSCQTYEGG  G PG+EAHGGYTFC
Sbjct: 121 VGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFC 180

Query: 226 GLAAMILINEADRLDLDALIGWVVFRQGV-EGGFQGRTNKLVDGCYSFWQGGVFALLRRF 284
            LAA+ ++ + D+LDL++L+ W+V RQ   EGGFQGRTNKLVDGCYSFW GG   +L   
Sbjct: 181 ALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAI 240

Query: 285 HSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLF 344
            +                                                F       LF
Sbjct: 241 LNAEK--------------------------------------------KFDDSAEGTLF 256

Query: 345 HSIALQRYLLLCSQ 358
              ALQ Y+LLC Q
Sbjct: 257 DQEALQEYILLCCQ 270

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular processes including Ras/mitogen activated protein kinase signaling pathways in mammals and, abscisic acid signal transduction in Arabidopsis. Length = 299

>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  333 bits (856), Expect = e-114
 Identities = 121/244 (49%), Positives = 165/244 (67%), Gaps = 3/244 (1%)

Query: 46  RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQ 105
           R+ H++YL R L+ L  S+ SLDA+R W+ YWIL S+ LLGE +D + +D  I+F+  CQ
Sbjct: 1   REKHIKYLQRCLKLLPSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQ 60

Query: 106 -DPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM 164
            + +GG+GGGPGQ PHLA+TYAAV +L  LG +     I+R K+Y FL  +++P G+FR 
Sbjct: 61  VNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSR-IDREKIYKFLSSLQNPDGSFRG 119

Query: 165 HDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTF 224
              GE+D R  Y A+S+ S+LNIL D   + + +YILSCQ Y+GG  G PG+E+HGGYTF
Sbjct: 120 DLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTF 179

Query: 225 CGLAAMILINEADRLDLDALIGWVVFRQGV-EGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           C +A++ L+   D +D + L+ W+V RQ    GGF GR NKLVD CYSFW G    +L R
Sbjct: 180 CAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGR 239

Query: 284 FHSI 287
            H I
Sbjct: 240 LHLI 243

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTase-II does not recognize its protein acceptor directly but requires Rab to complex with REP (Rab escort protein) before prenylation can occur. These enzymes are found exclusively in eukaryotes. Length = 286

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  229 bits (585), Expect = 1e-72
 Identities = 99/243 (40%), Positives = 141/243 (58%), Gaps = 2/243 (0%)

Query: 41  MMELQRKNHVEYLL-RGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIE 99
            ++L    H+ YL+ R        F  L+A+R    YW  +S+ +L  +     ++R I 
Sbjct: 23  HLQLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKIS 82

Query: 100 FLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPS 159
           F+  C  P+GG+GGGPGQ  HLA+T  A+ +L  L     L  I+R  + +F+  +K+P 
Sbjct: 83  FVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPD 142

Query: 160 GAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAH 219
           G+FR    GE+D R  Y A+S+ S+L  LD EL +   +Y+  CQ YEGG    P +EAH
Sbjct: 143 GSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAH 202

Query: 220 GGYTFCGLAAMILINEADRL-DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF 278
            GYTFC LAA+ L+ + D+L D++ LI W+  RQ   GG  GR+NKLVD CYSFW     
Sbjct: 203 AGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSL 262

Query: 279 ALL 281
           A+L
Sbjct: 263 AIL 265

Length = 342

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score =  185 bits (471), Expect = 3e-56
 Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 19/260 (7%)

Query: 46  RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLE-----DRTIEF 100
            + H++YLLR     G  + SL   + W   W L ++ LL        +     ++ I+ 
Sbjct: 1   IEKHLKYLLRYPYGDGHWYQSLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQR 60

Query: 101 LSRCQDPNGGYGGGPGQM-PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPS 159
           L   Q  +GG+ G  G   P L  T  A+ AL+  G   ++  I+ ++   +L  +++  
Sbjct: 61  LLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNED 120

Query: 160 GAFRMHDAG-------EIDVRACYTAISVASILNIL-DDELLQNVGNYILSCQTYEGGIA 211
           G FR    G       E DVR    A+   ++L  L  D L++   +Y+LSCQ Y+GG  
Sbjct: 121 GGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF- 179

Query: 212 GEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR---TNKLVDG 268
             PG E+HG  T C  AA+ L+ + D  D    + W++ RQ  +GG+      TNKL D 
Sbjct: 180 -GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDS 238

Query: 269 CYSFWQGGVFALLRRFHSII 288
           CY+ W       L +   + 
Sbjct: 239 CYTEWAAYALLALGKLGDLE 258

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  174 bits (442), Expect = 7e-52
 Identities = 94/269 (34%), Positives = 137/269 (50%), Gaps = 32/269 (11%)

Query: 46  RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDR--TIEFLSR 103
           +K HV++  R LQ L  S+ SLD NR  I ++ L  + LLG      +E++   IE++  
Sbjct: 1   KKKHVKFFQRCLQLLPSSYQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYS 60

Query: 104 CQ----DPNGGYGGGPG----------QMPHLATTYAAVNALISLGGEKSLPSINRSKVY 149
            Q     P GG+ G                +LA TY A+ +L+ LG + S   ++R  + 
Sbjct: 61  LQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSR--VDRKAIL 118

Query: 150 TFLKCMKDPSGAFR---MHDAGEIDVRACYTAISVASILNILDDELLQNVG-----NYIL 201
            FL  ++ P G+F      + GE D+R CY A    +I  +LDD   +++      +YI 
Sbjct: 119 NFLSKLQLPDGSFGSVLDSEGGENDMRFCYCA---VAICYMLDDWSEEDIDKEKLIDYIK 175

Query: 202 SCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD---LDALIGWVVFRQGVEGGF 258
           S Q+Y+GG    PG E+HGG TFC +A++ L+ + + L    L+ L  W+V RQ    GF
Sbjct: 176 SSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGF 235

Query: 259 QGRTNKLVDGCYSFWQGGVFALLRRFHSI 287
            GR NK  D CYSFW G    LL  F  I
Sbjct: 236 NGRPNKPADTCYSFWVGASLKLLDAFQLI 264

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  159 bits (405), Expect = 1e-46
 Identities = 75/215 (34%), Positives = 113/215 (52%), Gaps = 10/215 (4%)

Query: 76  YWILHSMALLGEFVDADLEDRTIEFLSRCQDPN-GGYGGGPGQMPHLATTYAAVNALISL 134
           YW L ++ LLG+    +  +  IEF+  CQD   GG+GG PG  PH+ +T +A+  L   
Sbjct: 34  YWGLTALDLLGQLERLN-REEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALY 92

Query: 135 GGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQ 194
                +   N+ K+  F+K +++  G+F     GE+D R  Y A+   ++L  LD   + 
Sbjct: 93  DLLNKIDE-NKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVD 151

Query: 195 NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGV 254
              +Y+LSC  ++GG    PG+E+H G  FC + A+ ++   D +D D L  W+  RQ  
Sbjct: 152 KAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLP 211

Query: 255 EGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIG 289
            GG  GR  KL D CYS+W   V + L     IIG
Sbjct: 212 SGGLNGRPEKLPDVCYSWW---VLSSL----KIIG 239

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score =  145 bits (369), Expect = 5e-41
 Identities = 82/253 (32%), Positives = 126/253 (49%), Gaps = 7/253 (2%)

Query: 37  AQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWI--CYWILHSMALLGEFVDADLE 94
               M EL    HV Y+   L++   SF S+      +   YW L ++ LLG+ +D    
Sbjct: 1   TSGPMGELVVDKHVRYIKS-LEKKKDSFESVVMEHLRMNGAYWGLTALDLLGK-LDDVDR 58

Query: 95  DRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC 154
           D  + ++ RCQ  +GG+GG  G  PH+  T +AV  L        L  ++  KV +++  
Sbjct: 59  DEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALF---DRLDLLDADKVASYVAG 115

Query: 155 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 214
           +++  G+F   + GEID R  Y A+   S+L  LD   ++   +YI+SC+ ++GG    P
Sbjct: 116 LQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTP 175

Query: 215 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 274
           G E+H G  FC + A+ +      +D D L  W+  RQ   GG  GR  KL D CYS+W 
Sbjct: 176 GGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWV 235

Query: 275 GGVFALLRRFHSI 287
                ++ R H I
Sbjct: 236 LSSLIIIDRVHWI 248

Length = 316

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 79.7 bits (197), Expect = 1e-18
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 7/115 (6%)

Query: 98  IEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD 157
           +++L   Q+P+GG+G   G    +A T  A+ AL +LG        +  K   +L   ++
Sbjct: 1   VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETP-----DVKKALAWLLSQQN 55

Query: 158 PSGAFRMHDAGEI-DVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGI 210
           P G F         D+ +   A++   +L    DDE ++   +Y+LSCQ  +GG 
Sbjct: 56  PDGGFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGGF 110

Length = 112

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score = 79.9 bits (197), Expect = 7e-17
 Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 19/194 (9%)

Query: 50  VEYLLRGLQQLGPSFCSLDANRPWI---------CYWILHSMALLGEFVDADLEDRTIEF 100
           + +LL  LQ     F         I           + L ++ALLG+     L ++ +++
Sbjct: 110 LNWLL-SLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDY 168

Query: 101 LSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSG 160
           L  CQ+ +GG+G  PG   H   T  A  AL  LG    L S +  K   +L   + P G
Sbjct: 169 LLSCQNYDGGFG--PGGESHGYGTACAAAALALLG---DLDSPDAKKALRWLLSRQRPDG 223

Query: 161 AFRMH-DAGEIDVRACYTAISVASILNILDDELLQNVG---NYILSCQTYEGGIAGEPGS 216
            +    D       +CYT  +  ++L +     L++      ++LS Q  +GG + +PG 
Sbjct: 224 GWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGK 283

Query: 217 EAHGGYTFCGLAAM 230
                +T   L A+
Sbjct: 284 SYDTQHTVFALLAL 297

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score = 73.7 bits (181), Expect = 9e-15
 Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 17/215 (7%)

Query: 72  PWICYWILHSMALLG--EFVDADLEDRTIEFLSRCQDPNGGYG-------GGPGQMPHLA 122
            W+  + L ++ L G    VD     R + +L   Q+ +GG+           G    + 
Sbjct: 82  LWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVR 141

Query: 123 TTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVA 182
            T  A+ AL  LG     P I ++  Y  L C     G       GE        A +  
Sbjct: 142 LTAYALIALALLGKLDPDPLIEKALDY-LLSCQNYDGGFGPG---GESHGYGTACAAAAL 197

Query: 183 SILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGG---YTF-CGLAAMILINEADR 238
           ++L  LD    +    ++LS Q  +GG               YT     A + L    D 
Sbjct: 198 ALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDL 257

Query: 239 LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFW 273
            D + L+ W++ +Q  +GGF  +  K  D  ++ +
Sbjct: 258 EDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVF 292

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 36/226 (15%)

Query: 28  HIYATVPPIAQTLMMELQRKNHVEYLLR-------GLQQLGPSFCSLDANRPW------I 74
           HI +T+  I Q L +     N ++           GLQ    SF        W       
Sbjct: 78  HILSTLSAI-QILAL-YDLLNKIDENKEKIAKFIKGLQNEDGSFS----GDKWGEVDTRF 131

Query: 75  CYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISL 134
            Y  +  + LLG+    D+ D+ +++L  C + +GG+G  PG   H    +  V AL  L
Sbjct: 132 SYCAVLCLTLLGKLDLIDV-DKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAIL 190

Query: 135 GGEKSLPSINRSKVYTFLKCMK-DPSGAFRMHDAGEIDVRACYT--AISVASIL---NIL 188
           G   SL  I+R ++  +L C +  PSG          DV  CY+   +S   I+   + +
Sbjct: 191 G---SLDLIDRDRLGWWL-CERQLPSGGLNGRPEKLPDV--CYSWWVLSSLKIIGRLHWI 244

Query: 189 DDELLQNVGNYILSCQTYE-GGIAGEPGSEAHGGYTFCGLAAMILI 233
           +   L+N   +IL+CQ  E GG A  PG+     +TF GLA + L+
Sbjct: 245 NKNKLKN---FILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 12/178 (6%)

Query: 74  ICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALIS 133
             Y  L  ++LLG+  D +L +  +++L +CQ+  GG+G  P    H   T+ A+ AL  
Sbjct: 157 FLYIALSILSLLGDL-DKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALAL 215

Query: 134 LGGEKSLPSINRS-KVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDEL 192
           LG    L  ++   K+  +L   +  SG         +D   CY +  V S L IL    
Sbjct: 216 LG---KLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDT--CY-SFWVLSSLAILGKLD 269

Query: 193 LQNVG---NYILSC-QTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
             N     +YIL C Q   GG +  PG E    +T  GLA + LI       +D +  
Sbjct: 270 FINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKYLNPVDPIYC 327

Length = 342

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 53.7 bits (130), Expect = 6e-10
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 194 QNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 234
           + + +Y+LSCQ  +GG  G PG E+   YT+C LAA+ L+ 
Sbjct: 4   EKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 51.0 bits (123), Expect = 6e-09
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 92  DLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLG 135
             +++ +++L  CQ+P+GG+GG PG       TY A+ AL  LG
Sbjct: 1   IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 31/173 (17%)

Query: 74  ICYWILHSMALLGEFVDADL-EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALI 132
           ICY       +L ++ + D+ +++ I+++   Q  +GG+G GPG   H  +T+ A+ +L 
Sbjct: 153 ICY-------MLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLS 205

Query: 133 SLG--GEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRA------CYTAISVASI 184
            LG   E S   + R K   +L          R       + R       CY +  V + 
Sbjct: 206 LLGKLEELSEKFLERLK--RWL--------VHRQVSGTGFNGRPNKPADTCY-SFWVGAS 254

Query: 185 LNILDDELLQNVG---NYILSCQ-TYEGGIAGEPGSEAHGGYTFCGLAAMILI 233
           L +LD   L +     NY+LS Q +  GG A  P S     +++ GLAA+ LI
Sbjct: 255 LKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 240 DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL 281
           D + L+ +++  Q  +GGF GR     D  Y++      ALL
Sbjct: 2   DKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALL 43

Length = 44

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 11/118 (9%)

Query: 50  VEYLLRGLQQL---GPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQD 106
           V+YLL   QQ    G        +   +    L ++A LGE  D     + + +L   Q+
Sbjct: 1   VDYLLS--QQNPDGGWGAAVGGGSDVAMTALALLALAALGETPDVK---KALAWLLSQQN 55

Query: 107 PNGGYGGGP-GQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFR 163
           P+GG+G  P    P L++T  A+ AL  LGGE    ++ ++  Y  L C  +P G F 
Sbjct: 56  PDGGFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDY-LLSCQ-NPDGGFG 111

Length = 112

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 42  MELQRKNHVEYLLRGLQQLGPSFCS---LDANRPWICYWILHSMALLGEFVDADLEDRTI 98
                K  + +LL      G  F      ++       + L ++ LLG   D +  ++ +
Sbjct: 39  ETPDVKKALAWLLSQQNPDG-GFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAV 97

Query: 99  EFLSRCQDPNGGYG 112
           ++L  CQ+P+GG+G
Sbjct: 98  DYLLSCQNPDGGFG 111

Length = 112

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 40/232 (17%)

Query: 21  NDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPW------I 74
           +D ++LY + A V  +A    ++L   + V   + GLQ    SF S D    W       
Sbjct: 81  HDPHILYTLSA-VQILALFDRLDLLDADKVASYVAGLQNEDGSF-SGDE---WGEIDTRF 135

Query: 75  CYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISL 134
            Y  L  ++LL      ++E + ++++  C++ +GG+G  PG   H    +  V AL ++
Sbjct: 136 SYCALCCLSLLKRLDKINVE-KAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGAL-AI 193

Query: 135 GGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVR------ACYT--AISVASILN 186
            G  SL  +++  +  +L          R   +G ++ R       CY+   +S   I++
Sbjct: 194 TG--SLHHVDKDLLGWWL--------CERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIID 243

Query: 187 ----ILDDELLQNVGNYILSCQTYE-GGIAGEPGSEAHGGYTFCGLAAMILI 233
               I  D+L +    +IL CQ  E GGI+  P       +TF G+A + L+
Sbjct: 244 RVHWIDKDKLAK----FILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLL 291

Length = 316

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 143 INRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           I++ K+  +L   ++P G F     GE D    Y A++  ++L 
Sbjct: 1   IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	362
KOG0365	423	consensus Beta subunit of farnesyltransferase [Pos	100.0
PLN02710	439	farnesyltranstransferase subunit beta	100.0
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	100.0
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	100.0
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	100.0
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	100.0
KOG0367	347	consensus Protein geranylgeranyltransferase Type I	100.0
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	100.0
KOG0366	329	consensus Protein geranylgeranyltransferase type I	100.0
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	100.0
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	100.0
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	100.0
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	100.0
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	100.0
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	100.0
PLN02710	439	farnesyltranstransferase subunit beta	100.0
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	99.96
KOG0367	347	consensus Protein geranylgeranyltransferase Type I	99.96
KOG0366	329	consensus Protein geranylgeranyltransferase type I	99.96
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.95
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.93
KOG0365	423	consensus Beta subunit of farnesyltransferase [Pos	99.9
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.83
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.81
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.79
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.77
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.77
PLN03012	759	Camelliol C synthase	99.76
PLN02993	763	lupeol synthase	99.74
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.74
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.73
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.7
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.64
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.62
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.61
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.59
COG1689	274	Uncharacterized protein conserved in archaea [Func	99.56
PLN02993	763	lupeol synthase	99.46
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.45
PLN03012	759	Camelliol C synthase	99.39
COG1689	274	Uncharacterized protein conserved in archaea [Func	99.37
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.37
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	99.33
KOG0497	760	consensus Oxidosqualene-lanosterol cyclase and rel	99.26
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	99.26
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.14
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.08
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.07
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.01
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	98.87
PF07678	246	A2M_comp: A-macroglobulin complement component; In	98.66
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	98.32
KOG0497	760	consensus Oxidosqualene-lanosterol cyclase and rel	98.25
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	98.05
PF07678	246	A2M_comp: A-macroglobulin complement component; In	98.03
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	97.01
KOG1366	1436	consensus Alpha-macroglobulin [Posttranslational m	96.24
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	96.15
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	95.67
PLN02279	784	ent-kaur-16-ene synthase	94.0
PF07944	520	DUF1680: Putative glycosyl hydrolase of unknown fu	90.83
PF01122	326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	90.21
PLN02592	800	ent-copalyl diphosphate synthase	82.72

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.4e-97  Score=701.81  Aligned_cols=310  Identities=54%  Similarity=0.918  Sum_probs=291.6

Q ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHH
Q 018000            4 DTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMA   83 (362)
Q Consensus         4 ~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~   83 (362)
                      ||..+.|.||++|.+||..|.++|..++....+.+..++.| |+||..||.+.|++||..|++||+||||++||++++|+
T Consensus        33 Dd~~v~t~ts~eQ~~~Et~v~~vl~~f~~~~~~~~~~~~~~-r~kH~~YL~~~Lr~Lp~~~~~LDASR~Wm~YWil~sl~  111 (423)
T KOG0365|consen   33 DDLHVDTVTSIEQKETETDVFEVLQSFEEISDDDPRLEPIF-RQKHLMYLDKMLRQLPSQYTCLDASRPWMCYWILNSLA  111 (423)
T ss_pred             hhhhcchHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHH-HHHHHHHHHHHHHhCCCcccccccCcchhHHHHHHHHH
Confidence            45568999999999999999999998876644434344556 99999999999999999999999999999999999999


Q ss_pred             HhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCcee
Q 018000           84 LLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFR  163 (362)
Q Consensus        84 lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~  163 (362)
                      ||+..++++..+++|+||..||.|.|||||||||.+|+++|||||++|+++|.+++++.|||++++.||.++|+|||||+
T Consensus       112 lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFr  191 (423)
T KOG0365|consen  112 LLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFR  191 (423)
T ss_pred             HhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHH
Q 018000          164 MHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDA  243 (362)
Q Consensus       164 ~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~  243 (362)
                      +|.+||+|+|++|||+++++|+|+.++++++++.+||.+|||||||||+.|+.||||||||||+|||+||++.+.+|+++
T Consensus       192 mh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~  271 (423)
T KOG0365|consen  192 MHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEK  271 (423)
T ss_pred             eecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCC-CCCcccCCCCCCCcccccchHHHHHHHHhhhhhccCCCCCCcccCCcccccCCCccccCCCCCCCCCCC
Q 018000          244 LIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSS  322 (362)
Q Consensus       244 l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (362)
                      +++|.++||+ +||||+||+||+||+|||||++|+++||++.....+..+                            + 
T Consensus       272 Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~----------------------------~-  322 (423)
T KOG0365|consen  272 LLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSL----------------------------E-  322 (423)
T ss_pred             HHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHHHHHHhcccccch----------------------------h-
Confidence            9999999999 999999999999999999999999999999876544332                            1 


Q ss_pred             cccccCCCcccccccccCcccccHHHHHHHHHHccCCcC
Q 018000          323 DEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQI  361 (362)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~yil~c~q~~~  361 (362)
                                        .++||.+|||+|||.|||.+.
T Consensus       323 ------------------~~~F~~~~LqeYIL~CcQ~~~  343 (423)
T KOG0365|consen  323 ------------------HLLFNKEALQEYILLCCQSPS  343 (423)
T ss_pred             ------------------hhhcCHHHHHHHHHhhccCCC
Confidence                              279999999999999999864

>PLN02710 farnesyltranstransferase subunit beta

Probab=100.00  E-value=6.2e-88  Score=675.73  Aligned_cols=358  Identities=66%  Similarity=1.113  Sum_probs=311.1

Q ss_pred             CCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHH
Q 018000            1 MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILH   80 (362)
Q Consensus         1 ~~~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~   80 (362)
                      ++-+|++++|.||++|.+||+.|.++|+.+...+++.++.++.|.|++|++||+++|+.||.+|+++|++|+|++||+|+
T Consensus         1 ~~~~~~~~~t~t~~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~H~~yl~~~l~~lp~~~~~lDa~r~~~~Yw~L~   80 (439)
T PLN02710          1 RVSSELPRLTVTQREQWKVEAKVFDIYRSFASAPPNAQSVMLELWREKHLEYLTRGLRQLGPSFSVLDANRPWLCYWILH   80 (439)
T ss_pred             CCcccCCCCCcCHHHHHHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHH
Confidence            45678999999999999999999999998876655555456789999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCC
Q 018000           81 SMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSG  160 (362)
Q Consensus        81 sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dG  160 (362)
                      +|+|||.+++++.++++++||.+||+++|||+++|++.+|+++||+||++|.+||++++++.|||+++++||+++|++||
T Consensus        81 sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dG  160 (439)
T PLN02710         81 SIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSG  160 (439)
T ss_pred             HHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCC
Confidence            99999998888899999999999999999999999999999999999999999998778899999999999999999999


Q ss_pred             ceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCccc
Q 018000          161 AFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD  240 (362)
Q Consensus       161 gF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d  240 (362)
                      ||.+++++|.|+|+||||+++++||+++++++++++++||++||++||||++.|+.|||++|||||||+|+||++.+.+|
T Consensus       161 gF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id  240 (439)
T PLN02710        161 GFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLD  240 (439)
T ss_pred             CcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccC
Confidence            99999999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHHHHhhhhhccCCCCCCcccCCcccccCC-CccccCCCCCCCC
Q 018000          241 LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDN-TQTTTASDVSEGD  319 (362)
Q Consensus       241 ~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  319 (362)
                      ++++++||++||..+|||+|||||+||+|||||++|+|+||+++..++.+++.....+..+.+.+. ++.++.++ ..++
T Consensus       241 ~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  319 (439)
T PLN02710        241 LPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSG-KDDA  319 (439)
T ss_pred             HHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccccccccccccccccc-cccc
Confidence            999999999999999999999999999999999999999999998775433311111111111111 11111111 1111


Q ss_pred             CCCcccccCCCccccccc---ccCcccccHHHHHHHHHHccCCc
Q 018000          320 GSSDEISSQGDEHCHFQH---REREPLFHSIALQRYLLLCSQVQ  360 (362)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~~yil~c~q~~  360 (362)
                      +.. .+.++.++|+.|..   ..+++|||++|||+|||.|||.+
T Consensus       320 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~  362 (439)
T PLN02710        320 GDT-DSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVL  362 (439)
T ss_pred             ccc-ccccccccccccccccccccccccCHHHHHHHHHHHcCCC
Confidence            111 45677888888833   36788999999999999999975

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.5e-68  Score=517.63  Aligned_cols=271  Identities=58%  Similarity=1.055  Sum_probs=253.2

Q ss_pred             HHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhH
Q 018000           46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTY  125 (362)
Q Consensus        46 r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty  125 (362)
                      |++|++||++++..+|++|+++|++|+|++||++++|++|+..++...++++++||++||+++|||++++++++|+.+||
T Consensus         1 ~~~h~~~~~~~l~~~p~~~~~~d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty   80 (299)
T cd02893           1 REKHIKYLKKSLRQLPSSFTSLDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTY   80 (299)
T ss_pred             ChHHHHHHHHHhhcCCccccccccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHH
Confidence            57999999999999999999999999999999999999999877778899999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccC
Q 018000          126 AAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQT  205 (362)
Q Consensus       126 ~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~  205 (362)
                      +|+++|.+++.++.++.+||+++++||+++|++||||+..+++|+|+|++|||++++.||+.+++++++++++||++||+
T Consensus        81 ~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~  160 (299)
T cd02893          81 AAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQT  160 (299)
T ss_pred             HHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC
Confidence            99999999998666889999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             CCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCC-CCcccCCCCCCCcccccchHHHHHHHHhhh
Q 018000          206 YEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGV-EGGFQGRTNKLVDGCYSFWQGGVFALLRRF  284 (362)
Q Consensus       206 ~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~-eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~  284 (362)
                      +||||++.|+.|+|++||||||++|++++..+.+|.+++++||++||.. +|||+|||||+||+|||||++++|+|++++
T Consensus       161 ~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~  240 (299)
T cd02893         161 YEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAI  240 (299)
T ss_pred             CCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998889999999999999995 999999999999999999999999999988


Q ss_pred             hhccCCCCCCcccCCcccccCCCccccCCCCCCCCCCCcccccCCCcccccccccCcccccHHHHHHHHHHccCCc
Q 018000          285 HSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQ  360 (362)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~yil~c~q~~  360 (362)
                      .+..++..                                            +++..+++|+++|++|||.|||..
T Consensus       241 ~~~~~~~~--------------------------------------------~~~~~~~~~~~~l~~~il~~~q~~  272 (299)
T cd02893         241 LNAEKKFD--------------------------------------------DSAEGTLFDQEALQEYILLCCQSE  272 (299)
T ss_pred             hccccccc--------------------------------------------ccccccccCHHHHHHHHHHhcCCC
Confidence            76443110                                            011237999999999999999974

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.9e-67  Score=494.30  Aligned_cols=262  Identities=39%  Similarity=0.712  Sum_probs=249.3

Q ss_pred             hhhhHHHHHHHHHHh-ccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000           42 MELQRKNHVEYLLRG-LQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH  120 (362)
Q Consensus        42 ~~l~r~~H~~yl~~~-l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh  120 (362)
                      +.|.+++|++|+... ...+|.-|.-++++|+|.+||..+++.+|+.......+++.+.+++.|+++.|||+++|+|.+|
T Consensus        24 l~L~~~~H~~yl~~~~~~~~~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~h  103 (342)
T COG5029          24 LQLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSH  103 (342)
T ss_pred             cccccchHHHHHHHhhhccccchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchh
Confidence            679999999999987 5678889999999999999999999999999765678999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018000          121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI  200 (362)
Q Consensus       121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI  200 (362)
                      +++||+||++|++++.-..++.+||+.+++||..+|+|||+|+..-.||+|+|++|+|+++++|++.++.++++.+++||
T Consensus       104 L~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl  183 (342)
T COG5029         104 LASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYL  183 (342)
T ss_pred             HHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence            99999999999999876678899999999999999999999999988999999999999999999999999999999999


Q ss_pred             HhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCccc-HHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHH
Q 018000          201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD-LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFA  279 (362)
Q Consensus       201 ~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d-~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~  279 (362)
                      ++|||||||||..|+.|||++|||||||+|++|++.+.++ ++++++||++||..+|||+||+||+||+|||||+++++.
T Consensus       184 ~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~  263 (342)
T COG5029         184 KKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLA  263 (342)
T ss_pred             HHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchHH
Confidence            9999999999999999999999999999999999999998 799999999999999999999999999999999999999


Q ss_pred             HHhhhhhccCCCCCCcccCCcccccCCCccccCCCCCCCCCCCcccccCCCcccccccccCcccccHHHHHHHHHHccCC
Q 018000          280 LLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQV  359 (362)
Q Consensus       280 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~yil~c~q~  359 (362)
                      ||++.                                                         .++|++.|.+|||.|||.
T Consensus       264 il~~~---------------------------------------------------------~~in~e~L~~yiL~c~q~  286 (342)
T COG5029         264 ILGKL---------------------------------------------------------DFINTEELTDYILDCQQE  286 (342)
T ss_pred             hcchh---------------------------------------------------------hhcCHHHHHHHHHhhccc
Confidence            99833                                                         379999999999999997


Q ss_pred             c
Q 018000          360 Q  360 (362)
Q Consensus       360 ~  360 (362)
                      .
T Consensus       287 ~  287 (342)
T COG5029         287 T  287 (342)
T ss_pred             C
Confidence            3

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=100.00  E-value=3.1e-65  Score=497.81  Aligned_cols=236  Identities=33%  Similarity=0.603  Sum_probs=224.6

Q ss_pred             hhhhHHHHHHHHHHhccCCCCCceec--cCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCC
Q 018000           42 MELQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMP  119 (362)
Q Consensus        42 ~~l~r~~H~~yl~~~l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~s  119 (362)
                      ++|.+++|++||.++++ +|++|.+.  |++|+|.+||++++|++|+. ++..+++++++||++||+++|||++.|++.+
T Consensus         6 ~~l~~~kh~~yl~~~~~-~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~-~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~   83 (316)
T PLN03201          6 GELVVDKHVRYIKSLEK-KKDSFESVVMEHLRMNGAYWGLTALDLLGK-LDDVDRDEVVSWVMRCQHESGGFGGNTGHDP   83 (316)
T ss_pred             hhccHHHHHHHHHHhCC-CCCCccccccccchHHHHHHHHHHHHHhCC-CccccHHHHHHHHHHhcCCCCCcCCCCCCcc
Confidence            57999999999999665 89999775  88999999999999999997 6667889999999999999999999999999


Q ss_pred             chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000          120 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY  199 (362)
Q Consensus       120 hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y  199 (362)
                      |+.+||+|+++|.+++.   ++.+|++++++||.++|++||||.+++++|.|+|++|||++++.|++..+..+++++++|
T Consensus        84 h~~~Ty~al~~L~ll~~---~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~  160 (316)
T PLN03201         84 HILYTLSAVQILALFDR---LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDY  160 (316)
T ss_pred             cHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence            99999999999999953   678999999999999999999999999999999999999999999998887889999999


Q ss_pred             HHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHH
Q 018000          200 ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFA  279 (362)
Q Consensus       200 I~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~  279 (362)
                      |++||++||||+..|+.|||++|||||+|+|+++|..+.+|.+++++||++||..+|||+|||||+||+|||||++++|+
T Consensus       161 i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~  240 (316)
T PLN03201        161 IVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI  240 (316)
T ss_pred             HHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988899999999999999999999999999999999999999999


Q ss_pred             HHh
Q 018000          280 LLR  282 (362)
Q Consensus       280 ll~  282 (362)
                      ||+
T Consensus       241 ll~  243 (316)
T PLN03201        241 IID  243 (316)
T ss_pred             Hhc
Confidence            995

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=4.4e-64  Score=488.03  Aligned_cols=236  Identities=38%  Similarity=0.667  Sum_probs=222.6

Q ss_pred             HHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCC--CHHhHHHHHHHHhhcc----CCCCCCCCCCC---
Q 018000           46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFV--DADLEDRTIEFLSRCQ----DPNGGYGGGPG---  116 (362)
Q Consensus        46 r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~--~~~~~~~~i~~l~~~Q----~~dGGFgg~pg---  116 (362)
                      ++||++|++++++.||.+|+++|++|+|++||+|++|.+|+.+.  +.++++++++||.+||    +++|||+++++   
T Consensus         1 ~~~H~~y~~~~l~~lp~~~~~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~   80 (307)
T cd02895           1 KKKHVKFFQRCLQLLPSSYQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGL   80 (307)
T ss_pred             ChHHHHHHHHHhhhCCchhhhhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcc
Confidence            47899999999999999999999999999999999999999865  5688999999999999    99999999887   


Q ss_pred             -------CCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc---CCCcccchHHHHHHHHHHhc
Q 018000          117 -------QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD---AGEIDVRACYTAISVASILN  186 (362)
Q Consensus       117 -------~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~---~ge~D~r~~Y~al~~~~LL~  186 (362)
                             +.+|+.+||+|+++|.+|+++  ++.+||+++++||+++|++||||...+   ++|.|+|+||||+++++||+
T Consensus        81 ~~~~~~~~~~~l~~ty~Al~~L~lL~~~--~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~  158 (307)
T cd02895          81 PGTASKYDTGNLAMTYFALLSLLILGDD--LSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLD  158 (307)
T ss_pred             ccccccCCcccHHHHHHHHHHHHHhCCc--hhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhC
Confidence                   589999999999999999864  556899999999999999999999987   89999999999999999999


Q ss_pred             cCC--HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCC---cccHHHHHHHHHhCCCCCCcccCC
Q 018000          187 ILD--DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD---RLDLDALIGWVVFRQGVEGGFQGR  261 (362)
Q Consensus       187 ~~~--~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~---~~d~~~l~~WL~~rQ~~eGGF~GR  261 (362)
                      ..+  ..+++++++||++||++||||+..|+.|+|++|||||+++|.+|+..+   .+|.+++++||++||..+|||+||
T Consensus       159 ~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr  238 (307)
T cd02895         159 DWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR  238 (307)
T ss_pred             CCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence            876  467899999999999999999999999999999999999999999876   689999999999999999999999


Q ss_pred             CCCCCcccccchHHHHHHHHhh
Q 018000          262 TNKLVDGCYSFWQGGVFALLRR  283 (362)
Q Consensus       262 ~nKlvD~CYsfW~~a~l~ll~~  283 (362)
                      +||++|+|||||++|+|+||+.
T Consensus       239 ~~k~~D~cysfw~~a~L~iL~~  260 (307)
T cd02895         239 PNKPADTCYSFWVGASLKLLDA  260 (307)
T ss_pred             CCCCCccchhhHHHHHHHHcCc
Confidence            9999999999999999999963

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-61  Score=450.77  Aligned_cols=244  Identities=35%  Similarity=0.640  Sum_probs=222.8

Q ss_pred             hhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCC--------CCCCC
Q 018000           42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPN--------GGYGG  113 (362)
Q Consensus        42 ~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~d--------GGFgg  113 (362)
                      .++.|+||++|++|+|+.||.+|+++|.+|+.++|+++.+|++|+. ++..+++.+|+||.+.|-..        -||-|
T Consensus         9 ~~~~~~kH~~ff~RhL~llP~~y~shd~~R~tiafFaisGLd~L~~-ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~G   87 (347)
T KOG0367|consen    9 SRFERKKHIKFFERHLQLLPSPYQSHDTNRLTIAFFAISGLDLLDA-LDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRG   87 (347)
T ss_pred             chhhHHHHHHHHHHHHHhCCCcccccccchHHHHHHHHcchhhhhh-hhccchhHHHHHHHhceeccccCCCceeeeeee
Confidence            5799999999999999999999999999999999999999999998 55566999999999988532        25655


Q ss_pred             C----------CCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceee-ccCCCcccchHHHHHHHH
Q 018000          114 G----------PGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM-HDAGEIDVRACYTAISVA  182 (362)
Q Consensus       114 ~----------pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~-~~~ge~D~r~~Y~al~~~  182 (362)
                      .          +-+.||++.||+++++|.++|++  ++.+||+.+++++..+|+|||+|.. ..++|+|||++|||++|+
T Consensus        88 sr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGdd--LsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~  165 (347)
T KOG0367|consen   88 SRSMNIPIATNTYNEPHLAMTYTSLACLVILGDD--LSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAIC  165 (347)
T ss_pred             eccccCCCCCCCCcchhHHHHHHHHHHHHHHcch--HhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHH
Confidence            3          23579999999999999999986  8999999999999999999999997 467899999999999999


Q ss_pred             HHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccC--C----cccHHHHHHHHHhCCCCCC
Q 018000          183 SILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA--D----RLDLDALIGWVVFRQGVEG  256 (362)
Q Consensus       183 ~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~--~----~~d~~~l~~WL~~rQ~~eG  256 (362)
                      +||+.+...+.++++.||++||+||||||..|+.|||+|+||||||+|+|+++.  +    ..+++++++|+.+||..+|
T Consensus       166 ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sg  245 (347)
T KOG0367|consen  166 YMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSG  245 (347)
T ss_pred             HHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccC
Confidence            999988888999999999999999999999999999999999999999999987  3    3358999999999999999


Q ss_pred             cccCCCCCCCcccccchHHHHHHHHhhhhhcc
Q 018000          257 GFQGRTNKLVDGCYSFWQGGVFALLRRFHSII  288 (362)
Q Consensus       257 GF~GR~nKlvD~CYsfW~~a~l~ll~~~~~~~  288 (362)
                      ||+||+||.||+||+||+|++|.||.+...++
T Consensus       246 GfqGR~NKp~DTCYaFWigasLklL~~~~~~d  277 (347)
T KOG0367|consen  246 GFQGRTNKPVDTCYAFWIGASLKLLDADWLID  277 (347)
T ss_pred             CcCCCCCCCchhHHHHHHHHHHHHccchHhhh
Confidence            99999999999999999999999998765444

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=5.8e-60  Score=454.99  Aligned_cols=236  Identities=33%  Similarity=0.623  Sum_probs=223.8

Q ss_pred             hhHHHHHHHHHHhcc-CCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhcc-CCCCCCCCCCCCCCch
Q 018000           44 LQRKNHVEYLLRGLQ-QLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQ-DPNGGYGGGPGQMPHL  121 (362)
Q Consensus        44 l~r~~H~~yl~~~l~-~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q-~~dGGFgg~pg~~shl  121 (362)
                      |+++||++||+++++ .+|.+|.++|++|+|++||++++|.+|+. .+..+++++++||++|| +++|||++.+++.+|+
T Consensus         1 ~~~~~h~~y~~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~-~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~   79 (287)
T cd02894           1 LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQ-LERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHI   79 (287)
T ss_pred             CCHHHHHHHHHHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHhcCCCCCCCCCCCCcchH
Confidence            578999999999998 58999999999999999999999999997 45568899999999999 7899999999999999


Q ss_pred             hhhHHHHHHHHHcCCCCCCChhh--HHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000          122 ATTYAAVNALISLGGEKSLPSIN--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY  199 (362)
Q Consensus       122 ~~Ty~Av~sL~ilg~~~~l~~id--r~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y  199 (362)
                      .+||+|+.+|.+++.   ++.+|  ++++++||+++|++||||.+.++++.|+|+||||++++.|++..+..+++++++|
T Consensus        80 ~~t~~a~~~L~ll~~---~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~  156 (287)
T cd02894          80 LSTLSAIQILALYDL---LNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDY  156 (287)
T ss_pred             HHHHHHHHHHHHhhh---hhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHH
Confidence            999999999999964   45677  8999999999999999999999999999999999999999998878889999999


Q ss_pred             HHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHH
Q 018000          200 ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFA  279 (362)
Q Consensus       200 I~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~  279 (362)
                      |++||++||||++.|+.|+|++||||||++|.++|+.+.++++++++||.+||..+|||+|||||.+|+|||||++++|.
T Consensus       157 l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~  236 (287)
T cd02894         157 LLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLK  236 (287)
T ss_pred             HHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHH
Confidence            99999999999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 018000          280 LLRR  283 (362)
Q Consensus       280 ll~~  283 (362)
                      +|+.
T Consensus       237 ~l~~  240 (287)
T cd02894         237 IIGR  240 (287)
T ss_pred             Hhcc
Confidence            9863

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-58  Score=427.03  Aligned_cols=246  Identities=32%  Similarity=0.590  Sum_probs=229.3

Q ss_pred             hhhhHHHHHHHHHHhccCCCCCc--eeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCC
Q 018000           42 MELQRKNHVEYLLRGLQQLGPSF--CSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMP  119 (362)
Q Consensus        42 ~~l~r~~H~~yl~~~l~~l~~~~--~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~s  119 (362)
                      .+|.++||++|+...=+ -..+|  ...+.-|+..+||.+.+|++|+. +....++++|.|+++||+.+|||++.||+.|
T Consensus        16 ~~Ll~dkH~~yI~~~~~-kk~~fey~l~EhlRmsgiYWg~tal~ll~~-le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~   93 (329)
T KOG0366|consen   16 DELLKDKHARYIESYGK-KKDSFEYCLTEHLRMSGIYWGLTALDLLGQ-LERMSREEIVSFVLSCQHEDGGFAGCPGHDP   93 (329)
T ss_pred             HHHHHHHHHHHHHHhcc-ccchHHHHHHhHhhhcchhhhhhHHHHhcc-cchhhHHHHHHHHHheecCCCCcCCCCCCCh
Confidence            68999999999988332 23444  45677799999999999999998 5556799999999999999999999999999


Q ss_pred             chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000          120 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY  199 (362)
Q Consensus       120 hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y  199 (362)
                      |+.+|.+||++|++...   +..+|++++..|+..+|++||+|.+...||+|+|++|||++.++||+.++..+++++++|
T Consensus        94 hll~TlsAvQiL~~yds---i~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~  170 (329)
T KOG0366|consen   94 HLLYTLSAVQILALYDS---INVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDF  170 (329)
T ss_pred             HHHHHHHHHHHHHHHcc---cccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHH
Confidence            99999999999999974   788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHH
Q 018000          200 ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFA  279 (362)
Q Consensus       200 I~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~  279 (362)
                      +++|.|.|||||..||.|||++..||+|++|+++|+.+.+|.+.+-.||..||.+.||.||||.|++|+|||||++++|.
T Consensus       171 ~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~  250 (329)
T KOG0366|consen  171 VLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLA  250 (329)
T ss_pred             HHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccCCCC
Q 018000          280 LLRRFHSIIGESP  292 (362)
Q Consensus       280 ll~~~~~~~~~~~  292 (362)
                      |++++.+++.+++
T Consensus       251 iigrl~wId~ekL  263 (329)
T KOG0366|consen  251 IIGRLHWIDREKL  263 (329)
T ss_pred             HhhhhhhccHHHH
Confidence            9999988776544

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=4.1e-57  Score=433.52  Aligned_cols=238  Identities=50%  Similarity=0.964  Sum_probs=227.6

Q ss_pred             HHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhcc-CCCCCCCCCCCCCCchhhh
Q 018000           46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQ-DPNGGYGGGPGQMPHLATT  124 (362)
Q Consensus        46 r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q-~~dGGFgg~pg~~shl~~T  124 (362)
                      +++|++||++++..+|.++...|++|+|++||+|++|.+||.+++...++++++||++|| +++|||++.+++.+|+..|
T Consensus         1 ~~~h~~~l~~~~~~~~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T   80 (286)
T cd02890           1 REKHIKYLQRCLKLLPSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLAST   80 (286)
T ss_pred             ChHHHHHHHHHhhcCChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHH
Confidence            479999999999989999999999999999999999999999888899999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 018000          125 YAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQ  204 (362)
Q Consensus       125 y~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ  204 (362)
                      |+|+.+|.+++.+ .++.+|++++++||.++|++||||+..+.++.|+|+|||+++++.+++....++++++++||++||
T Consensus        81 ~~al~~l~llg~~-~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q  159 (286)
T cd02890          81 YAAVLSLAILGDD-ALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQ  159 (286)
T ss_pred             HHHHHHHHHcCcc-ccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhC
Confidence            9999999999964 456788999999999999999999999999999999999999999999887788999999999999


Q ss_pred             CCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCC-cccCCCCCCCcccccchHHHHHHHHhh
Q 018000          205 TYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEG-GFQGRTNKLVDGCYSFWQGGVFALLRR  283 (362)
Q Consensus       205 ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eG-GF~GR~nKlvD~CYsfW~~a~l~ll~~  283 (362)
                      ++||||+..|+.|+|+.+||||+++|.+++..+.++++++++||.+||..+| ||+||+||++|+||+||++++|.+|++
T Consensus       160 ~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~  239 (286)
T cd02890         160 NYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGR  239 (286)
T ss_pred             CCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHccc
Confidence            9999999999999999999999999999999988999999999999999776 999999999999999999999999975


Q ss_pred             h
Q 018000          284 F  284 (362)
Q Consensus       284 ~  284 (362)
                      +
T Consensus       240 ~  240 (286)
T cd02890         240 L  240 (286)
T ss_pred             c
Confidence            5

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=2.1e-45  Score=357.21  Aligned_cols=238  Identities=21%  Similarity=0.324  Sum_probs=218.6

Q ss_pred             hhhHHHHHHHHHHhcc---CCCCCceec------------cCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCC
Q 018000           43 ELQRKNHVEYLLRGLQ---QLGPSFCSL------------DANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDP  107 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~---~l~~~~~~l------------D~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~  107 (362)
                      .++|++.++||.+++.   ...|+|...            |.++++.+||++.+|.+|+.+.+..+++++++||++||++
T Consensus        48 ~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~  127 (307)
T cd02895          48 VEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLP  127 (307)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCC
Confidence            5889999999999872   456778652            4689999999999999999766556899999999999999


Q ss_pred             CCCCCCCC---CCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHH
Q 018000          108 NGGYGGGP---GQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASI  184 (362)
Q Consensus       108 dGGFgg~p---g~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~L  184 (362)
                      ||||++.+   +.++|+..||+||++|.+++..+. +.+|++++++||.++|++||||...+++|+|.++||||++++.+
T Consensus       128 dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~-~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~l  206 (307)
T cd02895         128 DGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE-EDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSL  206 (307)
T ss_pred             CCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc-ccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHH
Confidence            99999987   889999999999999999996422 35789999999999999999999999999999999999999999


Q ss_pred             hccCC---HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCC-CCCcccC
Q 018000          185 LNILD---DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQG  260 (362)
Q Consensus       185 L~~~~---~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~-~eGGF~G  260 (362)
                      |+..+   .++.+++++||++||+++|||++.|+.++|+.||||++|+|.+|++.+.+|.+++.+||.++|. .+|||++
T Consensus       207 L~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~  286 (307)
T cd02895         207 LGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAK  286 (307)
T ss_pred             cCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCC
Confidence            99875   6889999999999999999999999999999999999999999999988999999999999886 7899999


Q ss_pred             CCCCCCcccccchHHHHHHHH
Q 018000          261 RTNKLVDGCYSFWQGGVFALL  281 (362)
Q Consensus       261 R~nKlvD~CYsfW~~a~l~ll  281 (362)
                      ||.|.+|.|+|||.+++|.|+
T Consensus       287 ~p~~~~D~~ht~~~la~Lsl~  307 (307)
T cd02895         287 NPDSHPDPLHSYLGLAALSLI  307 (307)
T ss_pred             CCCCCCChhHHHHHHHHHHhC
Confidence            999999999999999999875

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.7e-45  Score=354.58  Aligned_cols=235  Identities=20%  Similarity=0.302  Sum_probs=216.1

Q ss_pred             hhhHHHHHHHHHHhccCCCCCceeccCCh--hHHHHHHHHHHHHhCCCCCHH--hHHHHHHHHhhccCCCCCCCCCCCCC
Q 018000           43 ELQRKNHVEYLLRGLQQLGPSFCSLDANR--PWICYWILHSMALLGEFVDAD--LEDRTIEFLSRCQDPNGGYGGGPGQM  118 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~~l~~~~~~lD~sr--~w~~Yw~l~sL~lLg~~~~~~--~~~~~i~~l~~~Q~~dGGFgg~pg~~  118 (362)
                      .++|++|++||++++...+++|...+.++  +..+|.++.+|.+|+. ++..  .++++++||++||++||||++.++.+
T Consensus        48 ~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~-~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e  126 (287)
T cd02894          48 RLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDL-LNKIDENKEKIAKFIKGLQNEDGSFSGDKWGE  126 (287)
T ss_pred             hhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhh-hhhccHHHHHHHHHHHHHcCCCCCeecCCCCC
Confidence            47899999999998867799998876554  4567899999999864 3333  48999999999999999999999999


Q ss_pred             CchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHH
Q 018000          119 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN  198 (362)
Q Consensus       119 shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~  198 (362)
                      +|+..||+|+++|.+++.   .+.++++++++||.++|++||||..++++|+|++.||||++++.+++..+..+++++++
T Consensus       127 ~d~~~ty~a~~~l~ll~~---~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~  203 (287)
T cd02894         127 VDTRFSYCAVLCLTLLGK---LDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGW  203 (287)
T ss_pred             chHHHHHHHHHHHHHhCC---cchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHH
Confidence            999999999999999974   56788999999999999999999999999999999999999999999887788999999


Q ss_pred             HHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCC-CCCcccCCCCCCCcccccchHHHH
Q 018000          199 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGV  277 (362)
Q Consensus       199 yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~  277 (362)
                      ||++||+++|||++.|+.++|+.||||++++|++++..+.+|.+++.+||.++|. .+|||++||+|.+|.|||||.+++
T Consensus       204 ~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~  283 (287)
T cd02894         204 WLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAG  283 (287)
T ss_pred             HHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHH
Confidence            9999999999999999999999999999999999999888999999999999996 789999999999999999999999


Q ss_pred             HHHH
Q 018000          278 FALL  281 (362)
Q Consensus       278 l~ll  281 (362)
                      |.||
T Consensus       284 Lsl~  287 (287)
T cd02894         284 LSLL  287 (287)
T ss_pred             HHhC
Confidence            9875

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.2e-41  Score=326.58  Aligned_cols=237  Identities=19%  Similarity=0.283  Sum_probs=217.1

Q ss_pred             hhhhHHHHHHHHHHhccCCCCCceec--cCChhHHHHHHHHHHHHhCCC-CCHHhHHHHHHHHhhccCCCCCCCCCCCCC
Q 018000           42 MELQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEF-VDADLEDRTIEFLSRCQDPNGGYGGGPGQM  118 (362)
Q Consensus        42 ~~l~r~~H~~yl~~~l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~~-~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~  118 (362)
                      ...+++++++||+++....+++|...  +.++++.+|+++.+|.++|.+ .+..+++++++||.+||+++|||++.|+.+
T Consensus        45 ~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~  124 (286)
T cd02890          45 DDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGE  124 (286)
T ss_pred             chHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCC
Confidence            45889999999999872457888753  568899999999999999974 455678899999999999999999999999


Q ss_pred             CchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHH
Q 018000          119 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN  198 (362)
Q Consensus       119 shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~  198 (362)
                      +|+..||+||++|.+++..   ..++++++++||.++|++||||..++++++|++.||||++++.+++..+..+++++++
T Consensus       125 ~d~~~ty~al~~l~ll~~~---~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~  201 (286)
T cd02890         125 VDTRFVYCALSILSLLNIL---TDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLR  201 (286)
T ss_pred             chHHHHHHHHHHHHHhCCc---hhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHH
Confidence            9999999999999999964   3578899999999999999999999999999999999999999999888889999999


Q ss_pred             HHHhccCCCC-CcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHH-hCCCCCCcccCCCCCCCcccccchHHH
Q 018000          199 YILSCQTYEG-GIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV-FRQGVEGGFQGRTNKLVDGCYSFWQGG  276 (362)
Q Consensus       199 yI~scQ~~dG-GFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~-~rQ~~eGGF~GR~nKlvD~CYsfW~~a  276 (362)
                      ||++||+.+| ||++.|+.++|+.||||++++|.+++.....+.+++.+||. ..|..+|||++||+|.+|.|||||.++
T Consensus       202 ~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~  281 (286)
T cd02890         202 WLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLS  281 (286)
T ss_pred             HHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHH
Confidence            9999999987 99999999999999999999999999887789999999999 456699999999999999999999999


Q ss_pred             HHHHH
Q 018000          277 VFALL  281 (362)
Q Consensus       277 ~l~ll  281 (362)
                      +|.++
T Consensus       282 ~lsl~  286 (286)
T cd02890         282 GLSLL  286 (286)
T ss_pred             HHHcC
Confidence            99874

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=100.00  E-value=5.7e-40  Score=320.24  Aligned_cols=236  Identities=20%  Similarity=0.308  Sum_probs=216.7

Q ss_pred             hhhHHHHHHHHHHhccCCCCCceecc--CChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000           43 ELQRKNHVEYLLRGLQQLGPSFCSLD--ANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH  120 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~~l~~~~~~lD--~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh  120 (362)
                      .+++++.++||.+|.. ..|+|....  ..+...+|.++.+|.+++. ++..+++++++||.++|++||||++.++.++|
T Consensus        55 ~~~~~~~i~~l~~cq~-~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~-~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D  132 (316)
T PLN03201         55 DVDRDEVVSWVMRCQH-ESGGFGGNTGHDPHILYTLSAVQILALFDR-LDLLDADKVASYVAGLQNEDGSFSGDEWGEID  132 (316)
T ss_pred             cccHHHHHHHHHHhcC-CCCCcCCCCCCcccHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHhcCCCCCccCCCCCCcc
Confidence            3688999999999865 567886532  2478899999999999976 66678899999999999999999998999999


Q ss_pred             hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018000          121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI  200 (362)
Q Consensus       121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI  200 (362)
                      +..||+|+++|.+++.   ++.+|++++++||.++|++||||..++++|+|...|||+++++.+++.++..+.+.+++||
T Consensus       133 ~r~ty~a~a~l~LL~~---~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL  209 (316)
T PLN03201        133 TRFSYCALCCLSLLKR---LDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWL  209 (316)
T ss_pred             HHHHHHHHHHHHHhCc---cchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHH
Confidence            9999999999999984   4668899999999999999999999999999999999999999999977666778999999


Q ss_pred             HhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCC-CCCcccCCCCCCCcccccchHHHHHH
Q 018000          201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFA  279 (362)
Q Consensus       201 ~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~l~  279 (362)
                      .+||+++|||++.|+.++|+.||||++|+|+++++.+.+|.+++.+||.++|. ..|||+++|+|.||.|||||.++.|+
T Consensus       210 ~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~ls  289 (316)
T PLN03201        210 CERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLS  289 (316)
T ss_pred             HHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHH
Confidence            99999999999999999999999999999999999889999999999999998 68999999999999999999999999


Q ss_pred             HHhh
Q 018000          280 LLRR  283 (362)
Q Consensus       280 ll~~  283 (362)
                      |++.
T Consensus       290 l~~~  293 (316)
T PLN03201        290 LLGY  293 (316)
T ss_pred             hcCC
Confidence            9864

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=8.1e-36  Score=289.05  Aligned_cols=234  Identities=18%  Similarity=0.235  Sum_probs=211.9

Q ss_pred             hhhHHHHHHHHHHhccCCCCCceec--cCChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHHHhhccCCCCCCCCCCCCC
Q 018000           43 ELQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEF--VDADLEDRTIEFLSRCQDPNGGYGGGPGQM  118 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~  118 (362)
                      .+.|++.++||.++.. ..++|...  +.++++.+|.++.+|.+|+.+  ++..+++++++||.+||++||||+..++.+
T Consensus        46 ~~~~~~~i~~i~~~q~-~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e  124 (299)
T cd02893          46 QSYADDVISFLRRCQN-PSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGE  124 (299)
T ss_pred             HHHHHHHHHHHHHhcC-CCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCC
Confidence            4678999999999875 47788764  357899999999999999964  456678899999999999999999999999


Q ss_pred             CchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHH
Q 018000          119 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN  198 (362)
Q Consensus       119 shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~  198 (362)
                      +|+..||+||+++.+|+.   +..++.+++++||.++|++||||...+++|+|...|||+++++.+++..+..+++++++
T Consensus       125 ~D~r~tycava~~~lL~~---~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~  201 (299)
T cd02893         125 VDVRGTYCAISVASLLNI---LTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLR  201 (299)
T ss_pred             chHhHHHHHHHHHHHhCC---CchhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHH
Confidence            999999999999999985   35567899999999999999999999999999999999999999999877778999999


Q ss_pred             HHHhccCC-CCCcCCCCCCCCchhHhHHHHHHHHHhccC-------------CcccHHHHHHHHHhCCC-CCCcccCCCC
Q 018000          199 YILSCQTY-EGGIAGEPGSEAHGGYTFCGLAAMILINEA-------------DRLDLDALIGWVVFRQG-VEGGFQGRTN  263 (362)
Q Consensus       199 yI~scQ~~-dGGFg~~pg~esh~~~TfcALaaL~llg~~-------------~~~d~~~l~~WL~~rQ~-~eGGF~GR~n  263 (362)
                      ||++||+. +|||.+.|+.++|..||||++++|++++..             ..+|.+++.+||..+|. .+|||+.+|+
T Consensus       202 wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~  281 (299)
T cd02893         202 WLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPG  281 (299)
T ss_pred             HHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCC
Confidence            99999998 999999999999999999999999999874             35789999999997665 7899999999


Q ss_pred             CCCcccccchHHHHHHH
Q 018000          264 KLVDGCYSFWQGGVFAL  280 (362)
Q Consensus       264 KlvD~CYsfW~~a~l~l  280 (362)
                      |.+|...++..++.|++
T Consensus       282 ~~~D~yHT~~~l~~Lsl  298 (299)
T cd02893         282 KPRDFYHTCYALSGLSI  298 (299)
T ss_pred             CCCCchhHHHHHHHHhc
Confidence            99999999999988876

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>PLN02710 farnesyltranstransferase subunit beta

Probab=100.00  E-value=1.8e-35  Score=297.13  Aligned_cols=240  Identities=16%  Similarity=0.225  Sum_probs=216.5

Q ss_pred             hhhHHHHHHHHHHhccCCCCCceec--cCChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHHHhhccCCCCCCCCCCCCC
Q 018000           43 ELQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEF--VDADLEDRTIEFLSRCQDPNGGYGGGPGQM  118 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~  118 (362)
                      ..+|++.++||.+|.. ..|+|...  +.+++..+||++.+|.+||.+  ++..+++++++||++||++||||++.++.+
T Consensus        91 ~~~~~~ii~~l~~cQ~-~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE  169 (439)
T PLN02710         91 DELENDTIDFLSRCQD-PNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGE  169 (439)
T ss_pred             HHHHHHHHHHHHHhcC-CCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCC
Confidence            3577999999999865 46788752  356889999999999999964  555679999999999999999999999999


Q ss_pred             CchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHH
Q 018000          119 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN  198 (362)
Q Consensus       119 shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~  198 (362)
                      +|+..||+|++++.+++.   ++.++.+++++||.++|..||||.+.+++|+|..++||+++++.||+.++..+.+++++
T Consensus       170 ~D~R~tYcAlail~LL~~---l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~  246 (439)
T PLN02710        170 MDVRACYTAISVASLLNI---LDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLIN  246 (439)
T ss_pred             CCcCCcHHHHHHHHHhCc---CchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHH
Confidence            999999999999999985   56678899999999999999999999999999999999999999999887778999999


Q ss_pred             HHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCC-----------------------------------------
Q 018000          199 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD-----------------------------------------  237 (362)
Q Consensus       199 yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~-----------------------------------------  237 (362)
                      ||.+||+.+|||+++|+..+|+.|+||++|+|+|+++.+                                         
T Consensus       247 WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (439)
T PLN02710        247 WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSAD  326 (439)
T ss_pred             HHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999998642                                         


Q ss_pred             ------------------cccHHHHHHHHHhCCC-CCCcccCCCCCCCcccccchHHHHHHHHhhhhh
Q 018000          238 ------------------RLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHS  286 (362)
Q Consensus       238 ------------------~~d~~~l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~~~  286 (362)
                                        .+|.+++.+||...|. +.|||+-+|+|.+|.-.++..++.|++++....
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~~~~  394 (439)
T PLN02710        327 YSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYSAS  394 (439)
T ss_pred             ccccccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHHhhccc
Confidence                              1467799999998765 789999999999999999999999999997654

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.1e-29  Score=237.73  Aligned_cols=190  Identities=28%  Similarity=0.442  Sum_probs=166.2

Q ss_pred             hhhHHHHHHHHHHhccCCCCCcee-cc-CChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000           43 ELQRKNHVEYLLRGLQQLGPSFCS-LD-ANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH  120 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~~l~~~~~~-lD-~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh  120 (362)
                      .++|+...+|+.. +++..|+|.+ ++ .++..++|.+++.+.|||. ++.++.+.+|+||++|||.+||||..|+-++|
T Consensus       125 ~idr~~l~~fi~~-lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~-~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaH  202 (342)
T COG5029         125 RIDRDSLASFISG-LKNPDGSFRSDLEGEVDTRFLYIALSILSLLGD-LDKELFEGAVDYLKKCQNYEGGFGLCPYAEAH  202 (342)
T ss_pred             hhhHHHHHHHHHh-ccCCCCceecccCCcchHHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHhhccCCcccCCCchhhc
Confidence            5788899999977 5556799975 22 2355679999999999995 88889999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHcCCCCCCChhh-HHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000          121 LATTYAAVNALISLGGEKSLPSIN-RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY  199 (362)
Q Consensus       121 l~~Ty~Av~sL~ilg~~~~l~~id-r~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y  199 (362)
                      .+.||||+++|++|+.   ++.++ .+++.+||..+|.+.|||.+++++.+|+++.|++++.+.+++...-.+.+.+.+|
T Consensus       203 ag~tFcalaalalL~~---Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~y  279 (342)
T COG5029         203 AGYTFCALAALALLGK---LDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDY  279 (342)
T ss_pred             cchHHHHHHHHHHHhc---ccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHH
Confidence            9999999999999995   77888 5999999999999999999999999999444445555667776666788999999


Q ss_pred             HHhccCC-CCCcCCCCCCCCchhHhHHHHHHHHHhccCC
Q 018000          200 ILSCQTY-EGGIAGEPGSEAHGGYTFCGLAAMILINEAD  237 (362)
Q Consensus       200 I~scQ~~-dGGFg~~pg~esh~~~TfcALaaL~llg~~~  237 (362)
                      |+.||.. -|||+..|+.+++.+||..++++|++++...
T Consensus       280 iL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~~~k~  318 (342)
T COG5029         280 ILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKY  318 (342)
T ss_pred             HHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHhccCC
Confidence            9999887 7999999999999999999999999998653

>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-28  Score=232.04  Aligned_cols=193  Identities=20%  Similarity=0.255  Sum_probs=168.6

Q ss_pred             hhhhHHHHHHHHHHhccCCCCCceec---cCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCC
Q 018000           42 MELQRKNHVEYLLRGLQQLGPSFCSL---DANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQM  118 (362)
Q Consensus        42 ~~l~r~~H~~yl~~~l~~l~~~~~~l---D~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~  118 (362)
                      .+++|+..++|+..+.+ ..|+|.+.   -.++++++|++++...+|+. .+..+.++++.||++||+.|||||..|+.+
T Consensus       123 srlDrksil~~v~~~Q~-~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~-~s~iD~ek~~~yI~~~q~YdgGfg~~pg~E  200 (347)
T KOG0367|consen  123 SRLDRKSILRFVSACQR-PDGSFVSINVGSESDMRFVYCAVAICYMLDF-WSGIDKEKLIGYIRSSQRYDGGFGQHPGGE  200 (347)
T ss_pred             hhhhHHHHHHHHHHhcC-CCCceeecCCCCchhhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHhhccccccccCCCCC
Confidence            46999999999988655 46999853   23579999999999999995 556788999999999999999999999999


Q ss_pred             CchhhhHHHHHHHHHcCCC--C-CCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHH
Q 018000          119 PHLATTYAAVNALISLGGE--K-SLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQN  195 (362)
Q Consensus       119 shl~~Ty~Av~sL~ilg~~--~-~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~  195 (362)
                      ||..+||||+++|+++|.-  + ....-+.+++++|+..+|..+|||.+++++.+|++++|+..+++.||+.....+.+.
T Consensus       201 sHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~  280 (347)
T KOG0367|consen  201 SHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQV  280 (347)
T ss_pred             CCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHH
Confidence            9999999999999998862  2 233344689999999999999999999999999966666666777888877788899


Q ss_pred             HHHHHHhccCC-CCCcCCCCCCCCchhHhHHHHHHHHHhccC
Q 018000          196 VGNYILSCQTY-EGGIAGEPGSEAHGGYTFCGLAAMILINEA  236 (362)
Q Consensus       196 ~~~yI~scQ~~-dGGFg~~pg~esh~~~TfcALaaL~llg~~  236 (362)
                      +.+||++||.. -|||++.|+..|+..|||.+++||++++.+
T Consensus       281 lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~  322 (347)
T KOG0367|consen  281 LRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEK  322 (347)
T ss_pred             HHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhcCC
Confidence            99999999986 599999999999999999999999999875

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.6e-28  Score=225.24  Aligned_cols=236  Identities=19%  Similarity=0.281  Sum_probs=216.8

Q ss_pred             hhhHHHHHHHHHHhccCCCCCceeccCC--hhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000           43 ELQRKNHVEYLLRGLQQLGPSFCSLDAN--RPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH  120 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~~l~~~~~~lD~s--r~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh  120 (362)
                      .+.|++.+.|+++|.. -.|+|..-..-  .+..+..++..|.+.+. ++..++++++.||...|++||.|.|..-.+-.
T Consensus        65 ~~~~eeiv~~v~~C~~-~~GGfa~~~Ghd~hll~TlsAvQiL~~yds-i~~~d~d~v~~yi~gLq~edGsF~gD~wGEvD  142 (329)
T KOG0366|consen   65 RMSREEIVSFVLSCQH-EDGGFAGCPGHDPHLLYTLSAVQILALYDS-INVLDRDKVASYIKGLQQEDGSFSGDIWGEVD  142 (329)
T ss_pred             hhhHHHHHHHHHheec-CCCCcCCCCCCChHHHHHHHHHHHHHHHcc-cccccHHHHHHHHHhhcCcCCcccCCcccccc
Confidence            4789999999999987 57888754332  45556678888888886 67778999999999999999999998777888


Q ss_pred             hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018000          121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI  200 (362)
Q Consensus       121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI  200 (362)
                      .-.+|+||++|.+||.   ++.++.+++++|++++.+-||||...|+.|+..-.+||.+.++++++.++..+.+.+..||
T Consensus       143 TRfs~~av~~L~lLg~---ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwl  219 (329)
T KOG0366|consen  143 TRFSYCAVACLALLGK---LDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWL  219 (329)
T ss_pred             hhhhHHHHHHHHHHhh---HHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHH
Confidence            9999999999999995   7899999999999999999999999999999999999999999999999888999999999


Q ss_pred             HhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCC-CCCcccCCCCCCCcccccchHHHHHH
Q 018000          201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFA  279 (362)
Q Consensus       201 ~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~l~  279 (362)
                      ...|-+.||..++|..-|+.-|+++.+++|+++|+.+.+|.+++.+||...|. +.|||+.||...+|.-.++...|.|+
T Consensus       220 ceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLS  299 (329)
T KOG0366|consen  220 CERQLPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLS  299 (329)
T ss_pred             HhccCCCCCCCCCcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHh
Confidence            99999999999999999999999999999999999999999999999999999 88999999999999999999999999


Q ss_pred             HHhh
Q 018000          280 LLRR  283 (362)
Q Consensus       280 ll~~  283 (362)
                      +|+-
T Consensus       300 Llg~  303 (329)
T KOG0366|consen  300 LLGY  303 (329)
T ss_pred             hhCC
Confidence            9984

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.95  E-value=3.1e-26  Score=213.96  Aligned_cols=236  Identities=32%  Similarity=0.548  Sum_probs=203.8

Q ss_pred             HHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCC-----CCHHhHHHHHHHHhhccCCCCCCCCCCCC-CCc
Q 018000           47 KNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEF-----VDADLEDRTIEFLSRCQDPNGGYGGGPGQ-MPH  120 (362)
Q Consensus        47 ~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~-----~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~-~sh  120 (362)
                      ++|++||.+.....++.+......++|.+++++.++..++..     .....++++++||.++|++||||+..++. .++
T Consensus         2 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~   81 (300)
T cd00688           2 EKHLKYLLRYPYGDGHWYQSLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPS   81 (300)
T ss_pred             hhHHHHHHHccccCCCccccCCcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCcc
Confidence            579999998776666666666788999999999999998752     34567899999999999999999998777 899


Q ss_pred             hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCC-------CcccchHHHHHHHHHHhccCC-HHH
Q 018000          121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAG-------EIDVRACYTAISVASILNILD-DEL  192 (362)
Q Consensus       121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~g-------e~D~r~~Y~al~~~~LL~~~~-~~~  192 (362)
                      +..|++++.+|..++.........++++++||.+.|++||+|......       ..|++.+++++.++.+++... ...
T Consensus        82 ~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~~  161 (300)
T cd00688          82 LWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPL  161 (300)
T ss_pred             hHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcHH
Confidence            999999999999998643344556789999999999999999976443       678888999999998887654 567


Q ss_pred             HHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCC---CCCCccc
Q 018000          193 LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT---NKLVDGC  269 (362)
Q Consensus       193 ~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~---nKlvD~C  269 (362)
                      ++++++||.++|+.+|||  .++.++|...|+|++.+|.+++......++++++||.++|..+|||....   ++.+|.|
T Consensus       162 ~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~  239 (300)
T cd00688         162 IEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSC  239 (300)
T ss_pred             HHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCchH
Confidence            899999999999999999  67888999999999999999997645568999999999999999999875   8899999


Q ss_pred             ccchHHHHHHHHhhh
Q 018000          270 YSFWQGGVFALLRRF  284 (362)
Q Consensus       270 YsfW~~a~l~ll~~~  284 (362)
                      +++|++.+|..++..
T Consensus       240 ~~~~~~~aL~~~~~~  254 (300)
T cd00688         240 YTEWAAYALLALGKL  254 (300)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999887754

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.93  E-value=2.4e-24  Score=201.18  Aligned_cols=234  Identities=22%  Similarity=0.296  Sum_probs=199.2

Q ss_pred             hhhhHHHHHHHHHHhccCCCCCceecc---CChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHHHhhccCCCCCCCCCCC
Q 018000           42 MELQRKNHVEYLLRGLQQLGPSFCSLD---ANRPWICYWILHSMALLGEF--VDADLEDRTIEFLSRCQDPNGGYGGGPG  116 (362)
Q Consensus        42 ~~l~r~~H~~yl~~~l~~l~~~~~~lD---~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~l~~~Q~~dGGFgg~pg  116 (362)
                      ..-..+++++||.+. +..+|+|..-.   .+.+|.+++++.+|..++..  ++...++++++||.++|++||||.....
T Consensus        50 ~~~~~~~~~~~l~~~-q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~  128 (300)
T cd00688          50 ADENIEKGIQRLLSY-QLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGP  128 (300)
T ss_pred             chHHHHHHHHHHHhc-cCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecC
Confidence            346788999999884 45678886533   56899999999999999874  5667889999999999999999987654


Q ss_pred             C-------CCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCC
Q 018000          117 Q-------MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD  189 (362)
Q Consensus       117 ~-------~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~  189 (362)
                      .       .++...|++++.+|..++...  ...+++++++||.+.|+++|+|  .++++.|+..+++++.++.+++...
T Consensus       129 ~~~~~~~~~~~~~~t~~al~aL~~~~~~~--~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~  204 (300)
T cd00688         129 GNHRIGGDESDVRLTAYALIALALLGKLD--PDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLD  204 (300)
T ss_pred             CCCcccCCCCcccHHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcc
Confidence            3       689999999999999998532  1446789999999999999999  5667888888888888888777654


Q ss_pred             HHHHHHHHHHHHhccCCCCCcCCCC---CCCCchhHhHHHHHHHHHhccC-CcccHHHHHHHHHhCCCCCCcccCCCCCC
Q 018000          190 DELLQNVGNYILSCQTYEGGIAGEP---GSEAHGGYTFCGLAAMILINEA-DRLDLDALIGWVVFRQGVEGGFQGRTNKL  265 (362)
Q Consensus       190 ~~~~~~~~~yI~scQ~~dGGFg~~p---g~esh~~~TfcALaaL~llg~~-~~~d~~~l~~WL~~rQ~~eGGF~GR~nKl  265 (362)
                      ...++++++||+++|+.+|||+..+   ..+++..+|++++.+|..++.. .....+++++||.++|..+|||.+++++.
T Consensus       205 ~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~  284 (300)
T cd00688         205 SPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKS  284 (300)
T ss_pred             hHHHHHHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCC
Confidence            5778999999999999999999875   6789999999999999999864 45568999999999999999999999999


Q ss_pred             CcccccchHHHHHHH
Q 018000          266 VDGCYSFWQGGVFAL  280 (362)
Q Consensus       266 vD~CYsfW~~a~l~l  280 (362)
                      +|+++++|++.+|..
T Consensus       285 ~~~~~t~~al~aL~~  299 (300)
T cd00688         285 YDTQHTVFALLALSL  299 (300)
T ss_pred             CcchhhHHHHHHHhc
Confidence            999999999988754

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.9e-23  Score=200.09  Aligned_cols=187  Identities=25%  Similarity=0.357  Sum_probs=162.1

Q ss_pred             hhhhHHHHHHHHHHhccCCCCCceecc--CChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCC
Q 018000           42 MELQRKNHVEYLLRGLQQLGPSFCSLD--ANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMP  119 (362)
Q Consensus        42 ~~l~r~~H~~yl~~~l~~l~~~~~~lD--~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~s  119 (362)
                      ..++|++..+||.+ ++..+|+|...+  -.+.+-+|++++...|||.+ .++.-+.+.+||.+||+.+|||||.|+.++
T Consensus       169 ~~InR~~l~~fL~s-lK~~dGgFrmh~~GE~DvRs~YcA~svasllni~-~deL~eG~~~wi~~CQtyEGG~GG~P~~EA  246 (423)
T KOG0365|consen  169 SSINREKLYQFLFS-LKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIP-MDELFEGTLDWIASCQTYEGGFGGEPGVEA  246 (423)
T ss_pred             HHhhHHHHHHHHHH-hcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhcccccCCcCCCccccc
Confidence            35999999999987 788899998643  35778999999999999995 457888999999999999999999999999


Q ss_pred             chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCC-CCCceeeccCCCcccchHHHHHHHHH--Hhcc-C---C---
Q 018000          120 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD-PSGAFRMHDAGEIDVRACYTAISVAS--ILNI-L---D---  189 (362)
Q Consensus       120 hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~-~dGgF~~~~~ge~D~r~~Y~al~~~~--LL~~-~---~---  189 (362)
                      |..+||||+++|++|+.   ++.+|++++.+|..++|. -.|||.++.++.+|-  ||+.|+.+.  ||.. .   .   
T Consensus       247 HGGYTFCalAalalLn~---~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDG--CYSFWvga~~~il~~~~~~~~~s~  321 (423)
T KOG0365|consen  247 HGGYTFCALAALALLNE---MDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDG--CYSFWVGASAPILQAFYSSAGHSL  321 (423)
T ss_pred             cCCeeHHHHHHHHHHhh---hhhhCHHHHHHHHHHhhhhhhccccccccchhhh--hHHHHhcchHHHHHHHhcccccch
Confidence            99999999999999986   688999999999999997 589999999999997  888887654  3321 1   1   


Q ss_pred             ---HHHHHHHHHHHHh-ccCCCCCcCCCCCCCCchhHhHHHHHHHHHhcc
Q 018000          190 ---DELLQNVGNYILS-CQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE  235 (362)
Q Consensus       190 ---~~~~~~~~~yI~s-cQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~  235 (362)
                         -.+.+++.+||+- ||...|||...|+...+.+||.+.|.+|++...
T Consensus       322 ~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCYcLsGLSiAq~  371 (423)
T KOG0365|consen  322 EHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCYCLSGLSIAQH  371 (423)
T ss_pred             hhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhhHhcchhHHhh
Confidence               1356789999987 699999999999999999999999999997653

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.83  E-value=2.8e-19  Score=189.19  Aligned_cols=182  Identities=19%  Similarity=0.233  Sum_probs=144.0

Q ss_pred             CCHHhHHHHHHHHhhccCCCCCCCCCC---------------------CCCCchhhhHHHHHHHHHcCCCCC---CChhh
Q 018000           89 VDADLEDRTIEFLSRCQDPNGGYGGGP---------------------GQMPHLATTYAAVNALISLGGEKS---LPSIN  144 (362)
Q Consensus        89 ~~~~~~~~~i~~l~~~Q~~dGGFgg~p---------------------g~~shl~~Ty~Av~sL~ilg~~~~---l~~id  144 (362)
                      ++.+..+++++||+++||+||||+...                     ...+++..|..+|.+|..++....   -..|+
T Consensus       397 ~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~  476 (634)
T TIGR03463       397 VPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRIT  476 (634)
T ss_pred             ccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHH
Confidence            445678899999999999999999421                     136799999999999999874321   11222


Q ss_pred             --HHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhcc-CCHHHHHHHHHHHHhccCCCCCcCC---------
Q 018000          145 --RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGIAG---------  212 (362)
Q Consensus       145 --r~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~-~~~~~~~~~~~yI~scQ~~dGGFg~---------  212 (362)
                        .+++++||++.|++||||.+.. |...+..|++++.++...+. .....++++++||++||+.||||+.         
T Consensus       477 ~ai~rav~~L~~~Q~~dGsW~g~W-g~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~  555 (634)
T TIGR03463       477 RAISRGVRFLRSRQREDGSFPGSW-GVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQAR  555 (634)
T ss_pred             HHHHHHHHHHHHhcCCCCCccccC-CCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCcccccc
Confidence              3689999999999999998765 44556667777777766665 3457789999999999999999985         


Q ss_pred             -CCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCC--CCCCccccc
Q 018000          213 -EPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT--NKLVDGCYS  271 (362)
Q Consensus       213 -~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~--nKlvD~CYs  271 (362)
                       .++.+++...|++||.+|...|..+...++++++||.++|.++|||....  .-.+..||-
T Consensus       556 y~~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~l  617 (634)
T TIGR03463       556 YVEGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAML  617 (634)
T ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCceeeeeCcceeE
Confidence             24567999999999999999998776779999999999999999997753  445666664

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.81  E-value=5.8e-20  Score=151.51  Aligned_cols=109  Identities=31%  Similarity=0.546  Sum_probs=91.3

Q ss_pred             HHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHH--HHHHHhcCCCCCceeecc-CCCcccch
Q 018000           98 IEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKV--YTFLKCMKDPSGAFRMHD-AGEIDVRA  174 (362)
Q Consensus        98 i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~--~~fL~s~Q~~dGgF~~~~-~ge~D~r~  174 (362)
                      |+||+++|++||||+.. +..+++..|+.|+.+|..++..     .+++++  ++||.++|++||+|...+ +.+.|++.
T Consensus         1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~-----~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~   74 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEE-----PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYT   74 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSH-----HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHH
T ss_pred             CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCc-----ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHH
Confidence            68999999999999987 8899999999999999999853     247788  999999999999999987 45689999


Q ss_pred             HHHHHHHHHHhccCCH-HHHHHHHHHHHhccCCCCCcCC
Q 018000          175 CYTAISVASILNILDD-ELLQNVGNYILSCQTYEGGIAG  212 (362)
Q Consensus       175 ~Y~al~~~~LL~~~~~-~~~~~~~~yI~scQ~~dGGFg~  212 (362)
                      +|+++.++.+++.... +.++++++||++||++||||+.
T Consensus        75 t~~~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y  113 (113)
T PF13249_consen   75 TYVALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY  113 (113)
T ss_dssp             HHHHHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence            9999999988876553 6789999999999999999974

...

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.79  E-value=5.1e-18  Score=180.01  Aligned_cols=183  Identities=20%  Similarity=0.226  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHhCCC------CCHHhHHHHHHHHhhccCCCCCCCCC-C--------------------CCCCchhhhHH
Q 018000           74 ICYWILHSMALLGEF------VDADLEDRTIEFLSRCQDPNGGYGGG-P--------------------GQMPHLATTYA  126 (362)
Q Consensus        74 ~~Yw~l~sL~lLg~~------~~~~~~~~~i~~l~~~Q~~dGGFgg~-p--------------------g~~shl~~Ty~  126 (362)
                      .+-.++.+|..++..      ++.+.++++++||+++|++||||+.. +                    ...+++..|++
T Consensus       376 ~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~  455 (634)
T cd02892         376 DTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGS  455 (634)
T ss_pred             chHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHH
Confidence            455566677666642      34567889999999999999999742 1                    12578889999


Q ss_pred             HHHHHHHcCCCCCCC--hh--hHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHH---HHHHHhccC--CHHHHHHHH
Q 018000          127 AVNALISLGGEKSLP--SI--NRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAI---SVASILNIL--DDELLQNVG  197 (362)
Q Consensus       127 Av~sL~ilg~~~~l~--~i--dr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al---~~~~LL~~~--~~~~~~~~~  197 (362)
                      ++.+|..++......  .+  -.+++++||.+.|++||||.+.. +   ++.+|..+   .++...+..  ....+++++
T Consensus       456 ~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~w-g---~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~  531 (634)
T cd02892         456 VLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRW-G---VCYIYGTWFALEALAAAGEDYENSPYIRKAC  531 (634)
T ss_pred             HHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccC-C---CccHHHHHHHHHHHHHhCCcccCcHHHHHHH
Confidence            999999998532110  12  24689999999999999997654 2   34455543   334334432  346789999


Q ss_pred             HHHHhccCCCCCcCCC----------CCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccC
Q 018000          198 NYILSCQTYEGGIAGE----------PGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG  260 (362)
Q Consensus       198 ~yI~scQ~~dGGFg~~----------pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~G  260 (362)
                      +||++||+.||||+..          ++.+++...|.+||.+|...+..+...++++++||.++|..+|||.-
T Consensus       532 ~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w~~  604 (634)
T cd02892         532 DFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQLPDGDWPQ  604 (634)
T ss_pred             HHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999853          24568999999999999998877666789999999999999999966

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.77  E-value=2.5e-17  Score=174.36  Aligned_cols=210  Identities=19%  Similarity=0.183  Sum_probs=154.0

Q ss_pred             HHHHHHHHHHhccCCCC------------Cce--ecc--CChhHHHHHHHHHHHHhCCC---CCHHhHHHHHHHHhhccC
Q 018000           46 RKNHVEYLLRGLQQLGP------------SFC--SLD--ANRPWICYWILHSMALLGEF---VDADLEDRTIEFLSRCQD  106 (362)
Q Consensus        46 r~~H~~yl~~~l~~l~~------------~~~--~lD--~sr~w~~Yw~l~sL~lLg~~---~~~~~~~~~i~~l~~~Q~  106 (362)
                      ..|-.+||.+.+...|+            ++.  ..+  .+..+-+-.+|.+|..++.+   ......+++++||+++||
T Consensus       338 l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn  417 (635)
T TIGR01507       338 LVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQS  417 (635)
T ss_pred             HHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcC
Confidence            34567788887533333            222  111  13556666788888777532   224578899999999999


Q ss_pred             CCCCCCCCCC-------------------CCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccC
Q 018000          107 PNGGYGGGPG-------------------QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDA  167 (362)
Q Consensus       107 ~dGGFgg~pg-------------------~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~  167 (362)
                      +||||+....                   .+|....|-.++.+|...+....  ..-.++.++||.+.|++||||.+..+
T Consensus       418 ~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~--~~~i~rav~~L~~~Q~~dG~W~g~wg  495 (635)
T TIGR01507       418 SNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDA--WPVIERAVEYLKREQEPDGSWFGRWG  495 (635)
T ss_pred             CCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHccCCCCCCccCCC
Confidence            9999975211                   24677889999999999875322  22246899999999999999976643


Q ss_pred             CCcccchHHHHHHHHHHhc---c-CCHHHHHHHHHHHHhccCCCCCcCCC----------CCCCCchhHhHHHHHHHHHh
Q 018000          168 GEIDVRACYTAISVASILN---I-LDDELLQNVGNYILSCQTYEGGIAGE----------PGSEAHGGYTFCGLAAMILI  233 (362)
Q Consensus       168 ge~D~r~~Y~al~~~~LL~---~-~~~~~~~~~~~yI~scQ~~dGGFg~~----------pg~esh~~~TfcALaaL~ll  233 (362)
                          ++.+|+.+.++..|.   . ...+.++++++||++||+.||||+..          +.++++...|.+||.+|...
T Consensus       496 ----~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~a  571 (635)
T TIGR01507       496 ----VNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAA  571 (635)
T ss_pred             ----CccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHh
Confidence                455676655444332   2 23467899999999999999999854          23478999999999999999


Q ss_pred             ccCCcccHHHHHHHHHhCCCCCCcccCC
Q 018000          234 NEADRLDLDALIGWVVFRQGVEGGFQGR  261 (362)
Q Consensus       234 g~~~~~d~~~l~~WL~~rQ~~eGGF~GR  261 (362)
                      +..+...++++++||.++|.++|||.-.
T Consensus       572 g~~~~~~I~rav~~L~~~Q~~dG~W~e~  599 (635)
T TIGR01507       572 GRAESEAARRGVQYLVETQRPDGGWDEP  599 (635)
T ss_pred             CCCCcHHHHHHHHHHHHhcCCCCCCCCc
Confidence            8776667899999999999999999654

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.77  E-value=4.2e-17  Score=159.76  Aligned_cols=168  Identities=17%  Similarity=0.227  Sum_probs=128.1

Q ss_pred             CCHHhHHHHHHHHhhccCCCCCCCCC-C------------------CCCCchhhhHHHHHHHHHcCCCCCCC--h--hhH
Q 018000           89 VDADLEDRTIEFLSRCQDPNGGYGGG-P------------------GQMPHLATTYAAVNALISLGGEKSLP--S--INR  145 (362)
Q Consensus        89 ~~~~~~~~~i~~l~~~Q~~dGGFgg~-p------------------g~~shl~~Ty~Av~sL~ilg~~~~l~--~--idr  145 (362)
                      +.++.++++++||.++|++||||... +                  ...+++..|.+++.+|..++......  .  .-.
T Consensus       114 ~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i  193 (348)
T cd02889         114 VSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAI  193 (348)
T ss_pred             hhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHH
Confidence            45677889999999999999999843 2                  12467889999999999988532110  0  124


Q ss_pred             HHHHHHHHhcCCCCCceeeccCCCcccchHHHH---HHHHHHhcc-CCHHHHHHHHHHHHhccCCCCCcCCC--------
Q 018000          146 SKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA---ISVASILNI-LDDELLQNVGNYILSCQTYEGGIAGE--------  213 (362)
Q Consensus       146 ~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~a---l~~~~LL~~-~~~~~~~~~~~yI~scQ~~dGGFg~~--------  213 (362)
                      +++++||.+.|++||+|....+ ..   .+|+.   +.++...+. ...+.++++++||++||+.||||+..        
T Consensus       194 ~~a~~~L~~~q~~dG~w~~~~~-~~---~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~  269 (348)
T cd02889         194 RRAVKYLEREQEPDGSWYGRWG-VC---FIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPS  269 (348)
T ss_pred             HHHHHHHHHhCCCCCCccccCC-Cc---chHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCccccccccc
Confidence            6899999999999999975432 22   34443   333333343 23467889999999999999999863        


Q ss_pred             --CCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccC
Q 018000          214 --PGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG  260 (362)
Q Consensus       214 --pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~G  260 (362)
                        ++..++...|.++|.+|...+..+...++++++||.++|.++|||..
T Consensus       270 ~~~~~~~~~~~Ta~al~aL~~~g~~~~~~v~~a~~wL~~~Q~~dG~f~~  318 (348)
T cd02889         270 YAGGGRSTVVQTAWALLALMAAGEPDSEAVKRGVKYLLNTQQEDGDWPQ  318 (348)
T ss_pred             ccCCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCCCcCC
Confidence              34568899999999999998876666789999999999999999986

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>PLN03012 Camelliol C synthase

Probab=99.76  E-value=5.7e-18  Score=180.13  Aligned_cols=181  Identities=19%  Similarity=0.206  Sum_probs=139.1

Q ss_pred             CCCCHHhHHHHHHHHhhccCCCCCCCCCCC---------------------CCCchhhhHHHHHHHHHcCCCCC---CCh
Q 018000           87 EFVDADLEDRTIEFLSRCQDPNGGYGGGPG---------------------QMPHLATTYAAVNALISLGGEKS---LPS  142 (362)
Q Consensus        87 ~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg---------------------~~shl~~Ty~Av~sL~ilg~~~~---l~~  142 (362)
                      .+++++...++|+||+++||+||||+....                     .++..-.|-.+|.+|.+++....   -+.
T Consensus       508 ~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~  587 (759)
T PLN03012        508 PKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEE  587 (759)
T ss_pred             ccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhh
Confidence            445567788999999999999999865321                     36777789999999999875211   112


Q ss_pred             hh--HHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHh---cc--CCHHHHHHHHHHHHhccCCCCCcCCCC-
Q 018000          143 IN--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL---NI--LDDELLQNVGNYILSCQTYEGGIAGEP-  214 (362)
Q Consensus       143 id--r~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL---~~--~~~~~~~~~~~yI~scQ~~dGGFg~~p-  214 (362)
                      ++  .+++++||++.|++||||.++.+    ++++|+.+.++.-|   +.  .+...++++++||++.|+.|||||..- 
T Consensus       588 i~~~i~rAv~~L~~~Q~~DGsW~G~Wg----v~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~  663 (759)
T PLN03012        588 INAFIKKAAEYIENIQMLDGSWYGNWG----ICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYL  663 (759)
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCccccc----ccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCC
Confidence            32  46899999999999999998774    57778776655433   22  223679999999999999999999752 


Q ss_pred             -----------CCCCchhHhHHHHHHHHHhccCCc--ccHHHHHHHHHhCCCCCCcccCC--CCCCCccccc
Q 018000          215 -----------GSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVEGGFQGR--TNKLVDGCYS  271 (362)
Q Consensus       215 -----------g~esh~~~TfcALaaL~llg~~~~--~d~~~l~~WL~~rQ~~eGGF~GR--~nKlvD~CYs  271 (362)
                                 +..||...|.+||.+|...|..+.  ..++|+++||.++|.++|+|.-.  +.-....||-
T Consensus       664 Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i  735 (759)
T PLN03012        664 SCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLL  735 (759)
T ss_pred             CCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEE
Confidence                       345999999999999999997643  35899999999999999998553  3335566664

>PLN02993 lupeol synthase

Probab=99.74  E-value=8.3e-17  Score=171.61  Aligned_cols=182  Identities=18%  Similarity=0.221  Sum_probs=137.7

Q ss_pred             CCCHHhHHHHHHHHhhccCCCCCCCCCCC---------------------CCCchhhhHHHHHHHHHcCCCC-CC--Chh
Q 018000           88 FVDADLEDRTIEFLSRCQDPNGGYGGGPG---------------------QMPHLATTYAAVNALISLGGEK-SL--PSI  143 (362)
Q Consensus        88 ~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg---------------------~~shl~~Ty~Av~sL~ilg~~~-~l--~~i  143 (362)
                      +++++...++++||+++||+||||+....                     .++..-.|-++|.+|.+++... ..  +.|
T Consensus       509 ~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei  588 (763)
T PLN02993        509 KIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEI  588 (763)
T ss_pred             cchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhH
Confidence            34556788999999999999999976421                     2688899999999999987421 11  222


Q ss_pred             h--HHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccC--CHHHHHHHHHHHHhccCCCCCcCCCC-----
Q 018000          144 N--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL--DDELLQNVGNYILSCQTYEGGIAGEP-----  214 (362)
Q Consensus       144 d--r~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~--~~~~~~~~~~yI~scQ~~dGGFg~~p-----  214 (362)
                      +  .+++++||.+.|++||||.++. |...+.+|++++.++...+..  ....++++++||+++|+.|||||..-     
T Consensus       589 ~~~i~rAv~yL~~~Q~~DGSW~G~W-gv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~  667 (763)
T PLN02993        589 IKSIEKAVQFIESKQTPDGSWYGNW-GICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPE  667 (763)
T ss_pred             HHHHHHHHHHHHHhcCCCCCccccc-ccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCC
Confidence            2  4789999999999999999865 433444444445444444443  22678999999999999999999742     


Q ss_pred             -------CCCCchhHhHHHHHHHHHhccCCc--ccHHHHHHHHHhCCCCCCcccCC--CCCCCcccc
Q 018000          215 -------GSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVEGGFQGR--TNKLVDGCY  270 (362)
Q Consensus       215 -------g~esh~~~TfcALaaL~llg~~~~--~d~~~l~~WL~~rQ~~eGGF~GR--~nKlvD~CY  270 (362)
                             +..|++..|.+|+.+|...|..+.  .-++++++||.++|..+|+|.-.  +.-.+-.||
T Consensus       668 ~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~  734 (763)
T PLN02993        668 QRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCM  734 (763)
T ss_pred             cccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccce
Confidence                   346899999999999999987544  24899999999999999998553  444666777

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.74  E-value=4e-16  Score=152.87  Aligned_cols=231  Identities=15%  Similarity=0.183  Sum_probs=163.7

Q ss_pred             HHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCC-CCCHHhHHHHHHHHhhcc--------------CCCCCCC
Q 018000           48 NHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGE-FVDADLEDRTIEFLSRCQ--------------DPNGGYG  112 (362)
Q Consensus        48 ~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~-~~~~~~~~~~i~~l~~~Q--------------~~dGGFg  112 (362)
                      +-++||.+.++ .+|+|.... +..|.+.+++.+|...|. +-..+.++++++||.+.|              .++|||+
T Consensus         3 ~~~~~L~~~Q~-~dG~W~~~~-~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~   80 (348)
T cd02889           3 RALDFLLSLQA-PDGHWPGEY-SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWA   80 (348)
T ss_pred             hHHHHHHHhcc-CCCCccccC-CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCc
Confidence            45789988554 577786544 778999999999998886 234567889999999999              6899988


Q ss_pred             CCCC--CCCchhhhHHHHHHHHHcCCCC----CCChhhHHHHHHHHHhcCCCCCceeeccCC------------------
Q 018000          113 GGPG--QMPHLATTYAAVNALISLGGEK----SLPSINRSKVYTFLKCMKDPSGAFRMHDAG------------------  168 (362)
Q Consensus       113 g~pg--~~shl~~Ty~Av~sL~ilg~~~----~l~~idr~~~~~fL~s~Q~~dGgF~~~~~g------------------  168 (362)
                      ....  ..++...|..++.+|..++...    ....-...++++||.+.|++||+|......                  
T Consensus        81 y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~  160 (348)
T cd02889          81 FSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMI  160 (348)
T ss_pred             ccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCcc
Confidence            6432  2456678889999998876421    111222468899999999999999843211                  


Q ss_pred             -CcccchHHHHHHHHHHhccC-CH------HHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccC-Ccc
Q 018000          169 -EIDVRACYTAISVASILNIL-DD------ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA-DRL  239 (362)
Q Consensus       169 -e~D~r~~Y~al~~~~LL~~~-~~------~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~-~~~  239 (362)
                       ..++..|..++.++..++.. +.      +.++++++||+++|+.+|||.+.. ...+...|++++.+|..+|.. ...
T Consensus       161 ~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~-~~~~~y~ta~a~~aL~~~g~~~~~~  239 (348)
T cd02889         161 DPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRW-GVCFIYGTWFALEALAAAGEDENSP  239 (348)
T ss_pred             CCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccC-CCcchHHHHHHHHHHHHcCCCcCcH
Confidence             12232244444444444432 22      467899999999999999996532 235667788899999988864 234


Q ss_pred             cHHHHHHHHHhCCCCCCcccCCC----------CCCCcccccchHHHHHHHH
Q 018000          240 DLDALIGWVVFRQGVEGGFQGRT----------NKLVDGCYSFWQGGVFALL  281 (362)
Q Consensus       240 d~~~l~~WL~~rQ~~eGGF~GR~----------nKlvD~CYsfW~~a~l~ll  281 (362)
                      .++++++||.++|.++|||....          ...+|.+++.|++-+|...
T Consensus       240 ~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~  291 (348)
T cd02889         240 YVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAA  291 (348)
T ss_pred             HHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhc
Confidence            57899999999999999997642          2346777777777666543

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.73  E-value=2.3e-16  Score=166.83  Aligned_cols=177  Identities=19%  Similarity=0.232  Sum_probs=132.3

Q ss_pred             CCHHhHHHHHHHHhhccCCCCCCCCC-------------C--------CCCCchhhhHHHHHHHHHcCCCC-CCChhhHH
Q 018000           89 VDADLEDRTIEFLSRCQDPNGGYGGG-------------P--------GQMPHLATTYAAVNALISLGGEK-SLPSINRS  146 (362)
Q Consensus        89 ~~~~~~~~~i~~l~~~Q~~dGGFgg~-------------p--------g~~shl~~Ty~Av~sL~ilg~~~-~l~~idr~  146 (362)
                      ++.+..+++++||+++||+||||+..             |        -..+....|..+|.+|..++... .+. -..+
T Consensus       385 ~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~-~~i~  463 (621)
T TIGR01787       385 VKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIR-NVLE  463 (621)
T ss_pred             ccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHH-HHHH
Confidence            45567889999999999999999842             2        12345578999999999887411 111 1247


Q ss_pred             HHHHHHHhcCCCCCceeeccCCCcccchHHHHHHH---HHHhccC--CHHHHHHHHHHHHhccCCCCCcCCCC-------
Q 018000          147 KVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISV---ASILNIL--DDELLQNVGNYILSCQTYEGGIAGEP-------  214 (362)
Q Consensus       147 ~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~---~~LL~~~--~~~~~~~~~~yI~scQ~~dGGFg~~p-------  214 (362)
                      ++++||.+.|++||+|.+..+    ++++|+.+.+   +..++..  ..+.++++++||+++|+.||||+...       
T Consensus       464 rAl~~L~~~Q~~DGsw~g~wg----~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~  539 (621)
T TIGR01787       464 RALEYLRREQRADGSWFGRWG----VNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPS  539 (621)
T ss_pred             HHHHHHHHhcCCCCCCcccCC----CCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccc
Confidence            899999999999999987653    3445554443   3333432  22678999999999999999998542       


Q ss_pred             ---CCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCC--CC-CCcccc
Q 018000          215 ---GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT--NK-LVDGCY  270 (362)
Q Consensus       215 ---g~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~--nK-lvD~CY  270 (362)
                         ..+|+...|.+||.+|...+......++++++||.++|.++|||....  .- .+-.||
T Consensus       540 y~~~~~S~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~  601 (621)
T TIGR01787       540 YVGSGGSTPSQTGWALMALIAAGEADSEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFY  601 (621)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccce
Confidence               246899999999999998887665578999999999999999996542  32 235676

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.70  E-value=2.8e-17  Score=135.41  Aligned_cols=108  Identities=23%  Similarity=0.354  Sum_probs=86.6

Q ss_pred             HHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHH--HHHHHhccCCCCCcCCCC-CCCCchhHhHH
Q 018000          149 YTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNV--GNYILSCQTYEGGIAGEP-GSEAHGGYTFC  225 (362)
Q Consensus       149 ~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~--~~yI~scQ~~dGGFg~~p-g~esh~~~Tfc  225 (362)
                      ++||+++|++||||... +.+.++-.|+.++.++..++..  ...+++  ++||.+||++||||+..| +.+++..+|++
T Consensus         1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~--~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~   77 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEE--PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV   77 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSH--HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred             CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence            68999999999999987 6778886677777666655543  347778  999999999999999999 56789999999


Q ss_pred             HHHHHHHhccCCc-ccHHHHHHHHHhCCCCCCccc
Q 018000          226 GLAAMILINEADR-LDLDALIGWVVFRQGVEGGFQ  259 (362)
Q Consensus       226 ALaaL~llg~~~~-~d~~~l~~WL~~rQ~~eGGF~  259 (362)
                      ++++|.+++.... ..++++++||.+.|+++|||+
T Consensus        78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~  112 (113)
T PF13249_consen   78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWG  112 (113)
T ss_dssp             HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred             HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence            9999999987653 568999999999999999996

...

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.64  E-value=2.2e-14  Score=152.44  Aligned_cols=214  Identities=16%  Similarity=0.171  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHhccCC-CCCc-eeccCChhHHHHHHHHHHHHhCCC-CCHHhHHHHHHHHhhccC--------------CC
Q 018000           46 RKNHVEYLLRGLQQL-GPSF-CSLDANRPWICYWILHSMALLGEF-VDADLEDRTIEFLSRCQD--------------PN  108 (362)
Q Consensus        46 r~~H~~yl~~~l~~l-~~~~-~~lD~sr~w~~Yw~l~sL~lLg~~-~~~~~~~~~i~~l~~~Q~--------------~d  108 (362)
                      ..+|++++.+.+-.- ++.. ...+.+..|-+=+++.+|.-.|.. -.....+++++||++.|.              +.
T Consensus       280 ~~~~l~~l~~~~~~~~~g~~~~~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~  359 (634)
T cd02892         280 FKRHLERIDDFLWLGPEGMKMCQTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRK  359 (634)
T ss_pred             HHHHHHHHHhcEEEecCCcEEEcCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCC
Confidence            457888888876322 3332 334567899999999998766753 223467899999999996              35


Q ss_pred             CCCCCC--CCCCCchhhhHHHHHHHHHcCCCCC----CChhhHHHHHHHHHhcCCCCCceeecc-C--C-----------
Q 018000          109 GGYGGG--PGQMPHLATTYAAVNALISLGGEKS----LPSINRSKVYTFLKCMKDPSGAFRMHD-A--G-----------  168 (362)
Q Consensus       109 GGFgg~--pg~~shl~~Ty~Av~sL~ilg~~~~----l~~idr~~~~~fL~s~Q~~dGgF~~~~-~--g-----------  168 (362)
                      |||+..  +...|.+..|..++.+|..++....    ...-..+++++||.++|++||||.... .  +           
T Consensus       360 GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~  439 (634)
T cd02892         360 GGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFED  439 (634)
T ss_pred             CCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhh
Confidence            777654  3345778899999999998875311    111124678999999999999997421 1  0           


Q ss_pred             -------CcccchHHHHHHHHHHhccCCH-------HHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhc
Q 018000          169 -------EIDVRACYTAISVASILNILDD-------ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN  234 (362)
Q Consensus       169 -------e~D~r~~Y~al~~~~LL~~~~~-------~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg  234 (362)
                             ...+--|..++.++.+++...+       ..++++++||+++|+.||||.+.- ...+.+.|+.++.+|..+|
T Consensus       440 ~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~~G  518 (634)
T cd02892         440 FGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRW-GVCYIYGTWFALEALAAAG  518 (634)
T ss_pred             hcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccC-CCccHHHHHHHHHHHHHhC
Confidence                   0111126666666666554322       468899999999999999996543 3466778999999999988


Q ss_pred             cC--CcccHHHHHHHHHhCCCCCCcccC
Q 018000          235 EA--DRLDLDALIGWVVFRQGVEGGFQG  260 (362)
Q Consensus       235 ~~--~~~d~~~l~~WL~~rQ~~eGGF~G  260 (362)
                      ..  ....++++++||.++|..+|||..
T Consensus       519 ~~~~~~~~i~~a~~~L~s~Q~~DGgWge  546 (634)
T cd02892         519 EDYENSPYIRKACDFLLSKQNPDGGWGE  546 (634)
T ss_pred             CcccCcHHHHHHHHHHHhcCCCCCCCCC
Confidence            75  234689999999999999999974

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.62  E-value=6.5e-14  Score=148.47  Aligned_cols=237  Identities=16%  Similarity=0.078  Sum_probs=160.6

Q ss_pred             hHHHHHHHHHHhccCCCCCcee-ccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccC-------------CCCC
Q 018000           45 QRKNHVEYLLRGLQQLGPSFCS-LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQD-------------PNGG  110 (362)
Q Consensus        45 ~r~~H~~yl~~~l~~l~~~~~~-lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~-------------~dGG  110 (362)
                      .+.+|++++.+.+...+++... -..|..|-+-+++.+|...|.+.++....++.+||+++|.             +.||
T Consensus       288 ~~~~~l~~l~~~~~~~~~g~~~~~~~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GG  367 (635)
T TIGR01507       288 FIKLGWEGIDLYGVELDDSWMFQACVSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGG  367 (635)
T ss_pred             HHHHHHHHHHHheEecCCceEecCCCCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCc
Confidence            4667999998876554444322 2357899999999999888864444567899999999973             2578


Q ss_pred             CCCC--CCCCCchhhhHHHHHHHHHcCCC-CCCChhhHHHHHHHHHhcCCCCCceeecc--C----------C----Ccc
Q 018000          111 YGGG--PGQMPHLATTYAAVNALISLGGE-KSLPSINRSKVYTFLKCMKDPSGAFRMHD--A----------G----EID  171 (362)
Q Consensus       111 Fgg~--pg~~shl~~Ty~Av~sL~ilg~~-~~l~~idr~~~~~fL~s~Q~~dGgF~~~~--~----------g----e~D  171 (362)
                      |+..  +...|.+..|..++.+|..++.. +.......++.++||.++|++||||....  +          +    ..|
T Consensus       368 W~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D  447 (635)
T TIGR01507       368 WAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTD  447 (635)
T ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccC
Confidence            7765  44479999999999999887532 11112235789999999999999996421  0          0    011


Q ss_pred             cchHH-HHHHHHH--Hhcc-CCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCC-cccHHHHHH
Q 018000          172 VRACY-TAISVAS--ILNI-LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD-RLDLDALIG  246 (362)
Q Consensus       172 ~r~~Y-~al~~~~--LL~~-~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~-~~d~~~l~~  246 (362)
                      --..- ++.++..  ..+. .....++++++||++.|+.||||-+. .+..+.+-|..+|.+|...|... ...++++++
T Consensus       448 ~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~-wg~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~  526 (635)
T TIGR01507       448 PPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGR-WGVNYLYGTGAVLSALKAVGIDTREPYIQKALA  526 (635)
T ss_pred             CCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccC-CCCccccHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence            10111 2222222  2222 22457899999999999999997332 22345666888888888777532 334799999


Q ss_pred             HHHhCCCCCCcccCCC----------CCCCcccccchHHHHHHHHh
Q 018000          247 WVVFRQGVEGGFQGRT----------NKLVDGCYSFWQGGVFALLR  282 (362)
Q Consensus       247 WL~~rQ~~eGGF~GR~----------nKlvD~CYsfW~~a~l~ll~  282 (362)
                      ||.++|..+|||....          ....|.-.+.|++-+|...+
T Consensus       527 wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag  572 (635)
T TIGR01507       527 WLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAG  572 (635)
T ss_pred             HHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhC
Confidence            9999999999997431          12345556777777765543

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.61  E-value=6.9e-14  Score=148.34  Aligned_cols=235  Identities=18%  Similarity=0.215  Sum_probs=158.0

Q ss_pred             HHHHHHHHHHhccCCCC-C--ceeccCChhHHHHHHHHHHHHhCCCC--CHHhHHHHHHHHhhccC--------------
Q 018000           46 RKNHVEYLLRGLQQLGP-S--FCSLDANRPWICYWILHSMALLGEFV--DADLEDRTIEFLSRCQD--------------  106 (362)
Q Consensus        46 r~~H~~yl~~~l~~l~~-~--~~~lD~sr~w~~Yw~l~sL~lLg~~~--~~~~~~~~i~~l~~~Q~--------------  106 (362)
                      ..+|+++|.+.+-.-+. +  .+...+ ..|-+=+++.+|.--|..-  .....+++.+||+++|.              
T Consensus       278 ~~k~l~~l~~~~~~~~~~g~~~q~~~s-~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~  356 (634)
T TIGR03463       278 VAAHLEGLEDYRYEDDDRGLRYNGYNS-SEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDP  356 (634)
T ss_pred             HHHHHHHHHhhEEEcCCCCEEEeeCCC-CchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCC
Confidence            56899999887754444 2  233333 3488888888886655311  11346789999999995              


Q ss_pred             CCCCCCCCC--CCCCchhhhHHHHHHHHHcCC---C--CCCChhhHHHHHHHHHhcCCCCCceeeccC---C--------
Q 018000          107 PNGGYGGGP--GQMPHLATTYAAVNALISLGG---E--KSLPSINRSKVYTFLKCMKDPSGAFRMHDA---G--------  168 (362)
Q Consensus       107 ~dGGFgg~p--g~~shl~~Ty~Av~sL~ilg~---~--~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~---g--------  168 (362)
                      +.|||+...  ...|..-.|-.++.+|..+..   .  +....-...++++||+++|++||||.....   +        
T Consensus       357 ~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~  436 (634)
T TIGR03463       357 AKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNP  436 (634)
T ss_pred             CCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCCh
Confidence            468888763  456788899989988877432   1  111222245789999999999999984221   1        


Q ss_pred             -------CcccchHHHHHHHHHHh---ccCC--------HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHH
Q 018000          169 -------EIDVRACYTAISVASIL---NILD--------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAM  230 (362)
Q Consensus       169 -------e~D~r~~Y~al~~~~LL---~~~~--------~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL  230 (362)
                             ..|....+|...++..|   ....        ...++++++||++.|+.||||.+.-+ ....+-|+++|.+|
T Consensus       437 ~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL  515 (634)
T TIGR03463       437 SEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGL  515 (634)
T ss_pred             HHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHH
Confidence                   12333444544333322   2221        23478999999999999999965433 34555699999999


Q ss_pred             HHhccC-CcccHHHHHHHHHhCCCCCCcccCCCC----------CCCcccccchHHHHHHHHh
Q 018000          231 ILINEA-DRLDLDALIGWVVFRQGVEGGFQGRTN----------KLVDGCYSFWQGGVFALLR  282 (362)
Q Consensus       231 ~llg~~-~~~d~~~l~~WL~~rQ~~eGGF~GR~n----------KlvD~CYsfW~~a~l~ll~  282 (362)
                      ..+|.. ....++++++||.+.|.++|||.++..          .......+.|++.+|...+
T Consensus       516 ~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g  578 (634)
T TIGR03463       516 RAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAG  578 (634)
T ss_pred             HHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcC
Confidence            998874 345589999999999999999987532          1344455667777765543

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.59  E-value=1.2e-13  Score=146.13  Aligned_cols=236  Identities=17%  Similarity=0.139  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHhcc-CCCCCceeccCChhHHHHHHHHHHHHhCC---CCCHHhHHHHHHHHhhccCCC-------------
Q 018000           46 RKNHVEYLLRGLQ-QLGPSFCSLDANRPWICYWILHSMALLGE---FVDADLEDRTIEFLSRCQDPN-------------  108 (362)
Q Consensus        46 r~~H~~yl~~~l~-~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~---~~~~~~~~~~i~~l~~~Q~~d-------------  108 (362)
                      ..+|++.|.+.+- ...+.+..-..|..|=+=+++.+|.--|.   +-......++++||.++|..+             
T Consensus       269 ~~~~l~~l~~~~~~~~dg~~~q~~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~  348 (621)
T TIGR01787       269 FQKHLQRIDDYLWLQLDGMKMQGTGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNL  348 (621)
T ss_pred             HHHHHHHHhhcEEEeCCccEEecCCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCC
Confidence            4678888887653 23444544457889999999999976663   222346789999999999977             


Q ss_pred             --CCCCCC--CCCCCchhhhHHHHHHHHHcCCC-CCCChhhHHHHHHHHHhcCCCCCceeecc-C-C-------------
Q 018000          109 --GGYGGG--PGQMPHLATTYAAVNALISLGGE-KSLPSINRSKVYTFLKCMKDPSGAFRMHD-A-G-------------  168 (362)
Q Consensus       109 --GGFgg~--pg~~shl~~Ty~Av~sL~ilg~~-~~l~~idr~~~~~fL~s~Q~~dGgF~~~~-~-g-------------  168 (362)
                        |||+..  ....|.+..|-+++.++.++..+ +....-..+++++||.++|++||||.... . +             
T Consensus       349 ~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f  428 (621)
T TIGR01787       349 KPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVF  428 (621)
T ss_pred             CCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhh
Confidence              666543  22356777787777776665432 12222234679999999999999997421 1 1             


Q ss_pred             -C--cccc---hHHHHHHHHHHhccC---CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc-
Q 018000          169 -E--IDVR---ACYTAISVASILNIL---DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR-  238 (362)
Q Consensus       169 -e--~D~r---~~Y~al~~~~LL~~~---~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~-  238 (362)
                       +  .|-.   -|-.++.++...+..   ....++++++||+++|+.||+|.+.-+ ....+-|.+++.+|..+|.... 
T Consensus       429 ~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg-~~y~YgT~~al~aL~~~G~~~~~  507 (621)
T TIGR01787       429 GDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWG-VNYTYGTGFVLSALAAAGRTYRN  507 (621)
T ss_pred             ccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCC-CCCchhHHHHHHHHHHhCCcccC
Confidence             0  1111   133333333333221   135689999999999999999865433 2334458889999999887532 


Q ss_pred             -ccHHHHHHHHHhCCCCCCcccCCCC----------CCCcccccchHHHHHHHHh
Q 018000          239 -LDLDALIGWVVFRQGVEGGFQGRTN----------KLVDGCYSFWQGGVFALLR  282 (362)
Q Consensus       239 -~d~~~l~~WL~~rQ~~eGGF~GR~n----------KlvD~CYsfW~~a~l~ll~  282 (362)
                       ..++++++||++.|..+|||.....          ..+|...+.|++-+|...+
T Consensus       508 ~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag  562 (621)
T TIGR01787       508 CPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAG  562 (621)
T ss_pred             CHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcC
Confidence             4489999999999999999975422          2457777788777665433

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.56  E-value=2.8e-14  Score=129.97  Aligned_cols=185  Identities=22%  Similarity=0.235  Sum_probs=142.9

Q ss_pred             HHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh-cCCCCCceeec----
Q 018000           91 ADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRMH----  165 (362)
Q Consensus        91 ~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s-~Q~~dGgF~~~----  165 (362)
                      ..+++++++||...|+.||||+...+-...++.||.||.++.+||.    ++..+++.++||.+ +|..-++|.+.    
T Consensus         5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~----evPr~EktiefL~d~~qt~~~~~a~~~~~l   80 (274)
T COG1689           5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGH----EVPRKEKTIEFLYDQMQTAGVGVAMAIEFL   80 (274)
T ss_pred             hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCC----cCchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            4678999999999999999999887777778999999999999995    45568999999998 44444444321    


Q ss_pred             ------------------------------c------CCCcccchHHHHHHHHHHhcc-CCHH-----------------
Q 018000          166 ------------------------------D------AGEIDVRACYTAISVASILNI-LDDE-----------------  191 (362)
Q Consensus       166 ------------------------------~------~ge~D~r~~Y~al~~~~LL~~-~~~~-----------------  191 (362)
                                                    .      +...-++.+|++..++.+.|. ..++                 
T Consensus        81 ~~lg~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~~~eE~k~~v~~~~re~~~g~~  160 (274)
T COG1689          81 RILGAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYEYLEEMKEKVIEFVREFGIGDA  160 (274)
T ss_pred             HHhcccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcCchHHHHHHHHHHhhhhccccc
Confidence                                          0      112347889999999998873 1111                 


Q ss_pred             ----------------------HHHHHHHHHHhccCCCCCcCCCCCC-CCchhHhHHHHHHHHHhccCCcccHHHHHHHH
Q 018000          192 ----------------------LLQNVGNYILSCQTYEGGIAGEPGS-EAHGGYTFCGLAAMILINEADRLDLDALIGWV  248 (362)
Q Consensus       192 ----------------------~~~~~~~yI~scQ~~dGGFg~~pg~-esh~~~TfcALaaL~llg~~~~~d~~~l~~WL  248 (362)
                                            ..+.+..|=.+| -.+|||...|++ .|-..-||+|+..|.||+...  -+++.++|+
T Consensus       161 YGv~~pnt~~t~~aly~l~~k~~~~~v~~Fe~~c-~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k~--~i~~~~rFI  237 (274)
T COG1689         161 YGVTHPNTTMTYQALYTLGSKGPKEEVRHFELCC-GDWGGFTEVPNSYPPYIEPTFYALRGLELLGGKY--CISDHIRFI  237 (274)
T ss_pred             cccCCcchHHHHHHHHhhccccchHHHHhHHhcc-ccCCCcccCCCCCCCccchHHHHHhHHHHHccCc--CchHHHHHH
Confidence                                  123344444444 457999999986 468889999999999999863  367899999


Q ss_pred             HhCCCCCCcccCCC-CCCCcccccchHHHHHHHHh
Q 018000          249 VFRQGVEGGFQGRT-NKLVDGCYSFWQGGVFALLR  282 (362)
Q Consensus       249 ~~rQ~~eGGF~GR~-nKlvD~CYsfW~~a~l~ll~  282 (362)
                      .+.|+++|||+... -..+-.-|+|.++++|..|.
T Consensus       238 ~slqN~nGGFRRS~~~GISt~e~tYrAl~~L~~l~  272 (274)
T COG1689         238 RSLQNQNGGFRRSYELGISTFENTYRALASLASLH  272 (274)
T ss_pred             HHhhcCCCCeeeeEeccccchHHHHHHHHHHHHHh
Confidence            99999999999764 35677889999999998875

>PLN02993 lupeol synthase

Probab=99.46  E-value=4.3e-12  Score=135.85  Aligned_cols=193  Identities=12%  Similarity=0.121  Sum_probs=140.5

Q ss_pred             cCChhHHHHHHHHHHHHhCCC-CCHHhHHHHHHHHhhccCC-----C----------CCCCCC--CCCCCchhhhHHHHH
Q 018000           68 DANRPWICYWILHSMALLGEF-VDADLEDRTIEFLSRCQDP-----N----------GGYGGG--PGQMPHLATTYAAVN  129 (362)
Q Consensus        68 D~sr~w~~Yw~l~sL~lLg~~-~~~~~~~~~i~~l~~~Q~~-----d----------GGFgg~--pg~~shl~~Ty~Av~  129 (362)
                      -.|..|=+-+++.+|.--|.. -......++.+||++.|-.     |          |||+..  ....|..-.|..++.
T Consensus       414 ~gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lk  493 (763)
T PLN02993        414 FGSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALK  493 (763)
T ss_pred             CCCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHH
Confidence            378999999999998777642 1234678999999999873     2          777765  445788899999988


Q ss_pred             HHHHcCCCC------CCChhhHHHHHHHHHhcCCCCCceeecc------------------CCCcccchHHHHHHHHHHh
Q 018000          130 ALISLGGEK------SLPSINRSKVYTFLKCMKDPSGAFRMHD------------------AGEIDVRACYTAISVASIL  185 (362)
Q Consensus       130 sL~ilg~~~------~l~~idr~~~~~fL~s~Q~~dGgF~~~~------------------~ge~D~r~~Y~al~~~~LL  185 (362)
                      ++.+|....      ....-...++++||+++|++||||..-.                  +--+|-..++|...++..|
T Consensus       494 a~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL  573 (763)
T PLN02993        494 CCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQAL  573 (763)
T ss_pred             HHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHH
Confidence            654443211      1111123578999999999999997532                  1124455677766655444


Q ss_pred             ccC----C-------HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc--ccHHHHHHHHHhCC
Q 018000          186 NIL----D-------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQ  252 (362)
Q Consensus       186 ~~~----~-------~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~--~d~~~l~~WL~~rQ  252 (362)
                      ...    +       +..++++++||++.|+.||||.+. .+....+-|++||.+|...|+...  ..++++++||+++|
T Consensus       574 ~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q  652 (763)
T PLN02993        574 VLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQ  652 (763)
T ss_pred             HHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence            322    1       246789999999999999999764 344667779999999999987632  46899999999999


Q ss_pred             CCCCcccCC
Q 018000          253 GVEGGFQGR  261 (362)
Q Consensus       253 ~~eGGF~GR  261 (362)
                      +++|||...
T Consensus       653 ~~DGGWGEs  661 (763)
T PLN02993        653 RDDGGWGES  661 (763)
T ss_pred             CCCCCcCcC
Confidence            999999874

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.45  E-value=5.6e-12  Score=122.27  Aligned_cols=199  Identities=17%  Similarity=0.241  Sum_probs=143.2

Q ss_pred             HHHHHHHHHhc------cCCCCCcee--ccCChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhhccCCCCCCCCCC-
Q 018000           47 KNHVEYLLRGL------QQLGPSFCS--LDANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGGGP-  115 (362)
Q Consensus        47 ~~H~~yl~~~l------~~l~~~~~~--lD~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~~Q~~dGGFgg~p-  115 (362)
                      ++-.+|+.+.+      ++.+|+|..  ...+.+|++-+++.+|.....  .+++...+++++||.+.|++||+|...- 
T Consensus        48 ~~~~~~i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~  127 (297)
T cd02896          48 DEALKYIRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSP  127 (297)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCC
Confidence            44555555443      446888853  346789999999999988764  4677889999999999999999998531 


Q ss_pred             -----------CCCCchhhhHHHHHHHHHcCCCCCC----ChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHH
Q 018000          116 -----------GQMPHLATTYAAVNALISLGGEKSL----PSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAIS  180 (362)
Q Consensus       116 -----------g~~shl~~Ty~Av~sL~ilg~~~~l----~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~  180 (362)
                                 +.++.+..|.+++.+|...+.....    .....++.++||.+.+.+             +...|..+.
T Consensus       128 ~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~-------------~~~~Y~~Al  194 (297)
T cd02896         128 VIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN-------------LQRPYALAI  194 (297)
T ss_pred             ccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc-------------CCChHHHHH
Confidence                       1136778898999998887642110    112356889999997653             233676555


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhccCCCCCcCCC--------CC---CCCchhHhHHHHHHHHHhccCCcccHHHHHHHHH
Q 018000          181 VASILNILDDELLQNVGNYILSCQTYEGGIAGE--------PG---SEAHGGYTFCGLAAMILINEADRLDLDALIGWVV  249 (362)
Q Consensus       181 ~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~--------pg---~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~  249 (362)
                      ++..|.........++.++|.+.|+.|||++..        ++   .......|.+||.++...+.  .....+.++||.
T Consensus       195 ~ayALal~~~~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~--~~~a~~iv~WL~  272 (297)
T cd02896         195 TAYALALADSPLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGD--IEYANPIARWLT  272 (297)
T ss_pred             HHHHHHHcCChhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCC--chhHHHHHHHHH
Confidence            554454444446788999999999999998742        11   12367899999999887774  336789999999


Q ss_pred             hCCCCCCcccC
Q 018000          250 FRQGVEGGFQG  260 (362)
Q Consensus       250 ~rQ~~eGGF~G  260 (362)
                      ++|+..|||..
T Consensus       273 ~qr~~~Ggf~s  283 (297)
T cd02896         273 EQRNYGGGFGS  283 (297)
T ss_pred             hcCCCCCCeeh
Confidence            99999999974

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>PLN03012 Camelliol C synthase

Probab=99.39  E-value=5.1e-11  Score=127.47  Aligned_cols=193  Identities=12%  Similarity=0.152  Sum_probs=133.1

Q ss_pred             CChhHHHHHHHHHHHHhCCCC-CHHhHHHHHHHHhhccCCC---------------CCCCCC--CCCCCchhhhHHHHHH
Q 018000           69 ANRPWICYWILHSMALLGEFV-DADLEDRTIEFLSRCQDPN---------------GGYGGG--PGQMPHLATTYAAVNA  130 (362)
Q Consensus        69 ~sr~w~~Yw~l~sL~lLg~~~-~~~~~~~~i~~l~~~Q~~d---------------GGFgg~--pg~~shl~~Ty~Av~s  130 (362)
                      .|..|=+-+++.+|.--|..- ......++.+||++.|..+               |||+..  ....|..-.|..|+.+
T Consensus       415 gSqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka  494 (759)
T PLN03012        415 GSQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKC  494 (759)
T ss_pred             CCcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHH
Confidence            788999999999887666421 2336779999999999842               666654  3346888889888866


Q ss_pred             HHH---cCCC---CCCChhhHHHHHHHHHhcCCCCCceeeccC----------------C--CcccchHHHHH---HHHH
Q 018000          131 LIS---LGGE---KSLPSINRSKVYTFLKCMKDPSGAFRMHDA----------------G--EIDVRACYTAI---SVAS  183 (362)
Q Consensus       131 L~i---lg~~---~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~----------------g--e~D~r~~Y~al---~~~~  183 (362)
                      +.+   +..+   +....-...++++||+++|++||||..-..                +  -+|-...-|..   .++.
T Consensus       495 ~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~  574 (759)
T PLN03012        495 CLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALI  574 (759)
T ss_pred             HHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHH
Confidence            333   3211   111111235789999999999999964211                1  12333333443   3333


Q ss_pred             HhccCC--------HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc--ccHHHHHHHHHhCCC
Q 018000          184 ILNILD--------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQG  253 (362)
Q Consensus       184 LL~~~~--------~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~--~d~~~l~~WL~~rQ~  253 (362)
                      +++...        ...++++++||++.|+.||||.+.=+. -..+-|..||.+|...|+...  .-++++++||+++|.
T Consensus       575 ~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv-~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~  653 (759)
T PLN03012        575 LFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGI-CFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQK  653 (759)
T ss_pred             HHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccc-cCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcC
Confidence            333211        346789999999999999999976444 344568899999999987532  458999999999999


Q ss_pred             CCCcccCCC
Q 018000          254 VEGGFQGRT  262 (362)
Q Consensus       254 ~eGGF~GR~  262 (362)
                      +||||.+..
T Consensus       654 ~DGGWGEs~  662 (759)
T PLN03012        654 DNGGWGESY  662 (759)
T ss_pred             CCCCcCCCC
Confidence            999998853

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.37  E-value=2.1e-11  Score=111.43  Aligned_cols=159  Identities=20%  Similarity=0.196  Sum_probs=121.0

Q ss_pred             CCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCC
Q 018000           60 LGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKS  139 (362)
Q Consensus        60 l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~  139 (362)
                      +.+++.-.-+.-+..+||+..+|.+.+.+++++.++++++|    |+.+|++.+.-...|+.-.||.|+..|...+.   
T Consensus       111 lggs~~f~t~~~Le~ty~~~~~l~~~n~~~~eE~k~~v~~~----~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~---  183 (274)
T COG1689         111 LGGSEEFGTATPLEATYWMMSALNMVNYEYLEEMKEKVIEF----VREFGIGDAYGVTHPNTTMTYQALYTLGSKGP---  183 (274)
T ss_pred             cCceeecCCCchHHHHHHHHHHHHHhCcCchHHHHHHHHHH----hhhhccccccccCCcchHHHHHHHHhhccccc---
Confidence            33444433455678999999999999987777666666555    66777776655567888899988888766652   


Q ss_pred             CChhhHHHHHHHHHhcCCCCCceeeccCCC-cccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCC-CCCC
Q 018000          140 LPSINRSKVYTFLKCMKDPSGAFRMHDAGE-IDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGE-PGSE  217 (362)
Q Consensus       140 l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge-~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~-pg~e  217 (362)
                           ++....|=.+|- .+|||...|++- .-+.-+|.|+.++.||+..  --+.+.++||++.||.+|||..+ .++.
T Consensus       184 -----~~~v~~Fe~~c~-~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~slqN~nGGFRRS~~~GI  255 (274)
T COG1689         184 -----KEEVRHFELCCG-DWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISDHIRFIRSLQNQNGGFRRSYELGI  255 (274)
T ss_pred             -----hHHHHhHHhccc-cCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchHHHHHHHHhhcCCCCeeeeEeccc
Confidence                 355666666644 489999887653 4566699999999999754  34578899999999999999876 4577


Q ss_pred             CchhHhHHHHHHHHHh
Q 018000          218 AHGGYTFCGLAAMILI  233 (362)
Q Consensus       218 sh~~~TfcALaaL~ll  233 (362)
                      |...+||.||++|..+
T Consensus       256 St~e~tYrAl~~L~~l  271 (274)
T COG1689         256 STFENTYRALASLASL  271 (274)
T ss_pred             cchHHHHHHHHHHHHH
Confidence            9999999999999875

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.37  E-value=1.1e-10  Score=112.56  Aligned_cols=200  Identities=18%  Similarity=0.242  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHhc------cCCCCCceec----cCChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhhccCCCCCCCC
Q 018000           46 RKNHVEYLLRGL------QQLGPSFCSL----DANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGG  113 (362)
Q Consensus        46 r~~H~~yl~~~l------~~l~~~~~~l----D~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~~Q~~dGGFgg  113 (362)
                      +++..+||...+      ++.+|+|..-    +.+.+|++-+++.+|.....  .+++..++++++||.+.|++||||+.
T Consensus        44 ~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~  123 (292)
T cd02897          44 ESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFRE  123 (292)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence            567778887643      5678888643    25688999999999988763  46778899999999999999999984


Q ss_pred             C-C--------CCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHH
Q 018000          114 G-P--------GQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASI  184 (362)
Q Consensus       114 ~-p--------g~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~L  184 (362)
                      . +        +..+++..|..++.+|...|...  .....++.++||.+.+.+             +..+|....++..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~--~~~~i~~a~~yL~~~~~~-------------~~~~y~~al~a~A  188 (292)
T cd02897         124 VGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPS--ERPVVEKALSCLEAALDS-------------ISDPYTLALAAYA  188 (292)
T ss_pred             CCcccChhhcCCCCCCcchHHHHHHHHHhcCCcc--ccHHHHHHHHHHHHhccc-------------CCCHHHHHHHHHH
Confidence            2 1        22356778999999999888532  122347899999987664             2235554433322


Q ss_pred             hccCCHHHHHHHHHHHH---hccCCCCCcCCC----------CC-CCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHh
Q 018000          185 LNILDDELLQNVGNYIL---SCQTYEGGIAGE----------PG-SEAHGGYTFCGLAAMILINEADRLDLDALIGWVVF  250 (362)
Q Consensus       185 L~~~~~~~~~~~~~yI~---scQ~~dGGFg~~----------pg-~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~  250 (362)
                      |.........++.+++.   ..++..|+|+..          +. ..++..-|.+||.+|...+.+......+.++||.+
T Consensus       189 L~~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~  268 (292)
T cd02897         189 LTLAGSEKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAK  268 (292)
T ss_pred             HHHcCCccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHH
Confidence            21111112334444443   345455667532          11 23577889999999887764333456788899999


Q ss_pred             CCCCCCcccC
Q 018000          251 RQGVEGGFQG  260 (362)
Q Consensus       251 rQ~~eGGF~G  260 (362)
                      .|..+|||..
T Consensus       269 ~q~~~Ggf~s  278 (292)
T cd02897         269 QRNSLGGFSS  278 (292)
T ss_pred             cCCCCCCccc
Confidence            9999999974

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=99.33  E-value=2.2e-12  Score=90.18  Aligned_cols=43  Identities=40%  Similarity=0.845  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhc
Q 018000          192 LLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN  234 (362)
Q Consensus       192 ~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg  234 (362)
                      +++++++||++||++||||++.|+.++|..|||||+++|+++|
T Consensus         2 d~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg   44 (44)
T PF00432_consen    2 DVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG   44 (44)
T ss_dssp             HHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999999999999986

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]

Probab=99.26  E-value=7.4e-11  Score=122.67  Aligned_cols=237  Identities=18%  Similarity=0.187  Sum_probs=164.6

Q ss_pred             CHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhhHHHHHHHHHHhcc--CCCCCce------------eccCChhHH---
Q 018000           12 TQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQ--QLGPSFC------------SLDANRPWI---   74 (362)
Q Consensus        12 ts~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~l~r~~H~~yl~~~l~--~l~~~~~------------~lD~sr~w~---   74 (362)
                      |+..|..|+-.|..++..-.  +++     ..-...+-.+||++...  ++|+.+.            -.|.-+.|.   
T Consensus       413 ~~sQ~Wdt~falqalla~~~--~~E-----~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsD  485 (760)
T KOG0497|consen  413 FNSQLWDTAFALQALLAAGL--VDE-----FRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSD  485 (760)
T ss_pred             cchhHHHHHHHHHHHHhcCC--cHH-----HHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeecc
Confidence            44667778777776654211  111     12223445579988763  4555431            123323322   


Q ss_pred             -----H-HHHH---HHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCC-------------C--------CCCchhhh
Q 018000           75 -----C-YWIL---HSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGP-------------G--------QMPHLATT  124 (362)
Q Consensus        75 -----~-Yw~l---~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~p-------------g--------~~shl~~T  124 (362)
                           . -..+   -...+++..++++..-++++.|+..|+.+|||....             .        .+..+-.|
T Consensus       486 ctaEal~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT  565 (760)
T KOG0497|consen  486 CTAEALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECT  565 (760)
T ss_pred             ccHHHHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccH
Confidence                 1 0111   123445556777777889999999999999997531             1        25678889


Q ss_pred             HHHHHHHHHcCCCCC-C--Chhh--HHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccC-----CHHHHH
Q 018000          125 YAAVNALISLGGEKS-L--PSIN--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-----DDELLQ  194 (362)
Q Consensus       125 y~Av~sL~ilg~~~~-l--~~id--r~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~-----~~~~~~  194 (362)
                      -++|.+|......-. .  ..|.  ..++++||.+.|.+||||.++.+    ++++|..+....-|-..     .-..++
T Consensus       566 ~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkty~nc~~ir  641 (760)
T KOG0497|consen  566 SSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKTYENCEAIR  641 (760)
T ss_pred             HHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchhhhccHHHH
Confidence            999999999865211 1  1222  25789999999999999999874    89999988765433211     135689


Q ss_pred             HHHHHHHhccCCCCCcCCCC------------CCCCchhHhHHHHHHHHHhccCCcc--cHHHHHHHHHhCCCCCCccc
Q 018000          195 NVGNYILSCQTYEGGIAGEP------------GSEAHGGYTFCGLAAMILINEADRL--DLDALIGWVVFRQGVEGGFQ  259 (362)
Q Consensus       195 ~~~~yI~scQ~~dGGFg~~p------------g~esh~~~TfcALaaL~llg~~~~~--d~~~l~~WL~~rQ~~eGGF~  259 (362)
                      ++++||++-|+.|||||..+            |..++...|.+|+.+|.+.|++...  .+.|+++.|.+.|.++|-|.
T Consensus       642 ka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfp  720 (760)
T KOG0497|consen  642 KACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFP  720 (760)
T ss_pred             HHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcc
Confidence            99999999999999999763            4458999999999999999987654  68999999999999888875

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=99.26  E-value=4e-12  Score=88.88  Aligned_cols=44  Identities=32%  Similarity=0.648  Sum_probs=42.1

Q ss_pred             ccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHHHHh
Q 018000          239 LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLR  282 (362)
Q Consensus       239 ~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~ll~  282 (362)
                      +|++++++||.++|.++|||++++++.+|+|||||++++|+||+
T Consensus         1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg   44 (44)
T PF00432_consen    1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG   44 (44)
T ss_dssp             SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999999999999974

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.14  E-value=1.5e-09  Score=105.32  Aligned_cols=154  Identities=14%  Similarity=0.027  Sum_probs=108.8

Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc-------
Q 018000           94 EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD-------  166 (362)
Q Consensus        94 ~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~-------  166 (362)
                      +++.++.++++|++||||+..++..++...|.+++.+|.........+.--.++.++||.+.|++||+|....       
T Consensus        54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m  133 (297)
T cd02896          54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM  133 (297)
T ss_pred             HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence            4556677889999999998776678999999999999988864322222234679999999999999998542       


Q ss_pred             -CC----CcccchHHHHHHHHHHhccC---------CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHH
Q 018000          167 -AG----EIDVRACYTAISVASILNIL---------DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMIL  232 (362)
Q Consensus       167 -~g----e~D~r~~Y~al~~~~LL~~~---------~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~l  232 (362)
                       ++    +.++  ..+|.++..|+...         ....++++++||.+++..          ..+.+.+.-+..||++
T Consensus       134 ~gg~~~~~~~~--~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal  201 (297)
T cd02896         134 TGGVEGSEGDV--SLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALAL  201 (297)
T ss_pred             cCCccccCCCc--cchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHH
Confidence             11    1233  44555555554321         124678999999998853          1244445555556777


Q ss_pred             hccCCcccHHHHHHHHHhCCCCCCcccCCC
Q 018000          233 INEADRLDLDALIGWVVFRQGVEGGFQGRT  262 (362)
Q Consensus       233 lg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~  262 (362)
                      .|.+   ...++.+||.++|..+||+..+.
T Consensus       202 ~~~~---~~~~a~~~L~~~~~~d~~~~~~~  228 (297)
T cd02896         202 ADSP---LSHAANRKLLSLAKRDGNGWYWW  228 (297)
T ss_pred             cCCh---hhHHHHHHHHHHhhhCCCcceec
Confidence            7754   56889999999999999887543

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.08  E-value=1.1e-08  Score=98.73  Aligned_cols=184  Identities=11%  Similarity=0.093  Sum_probs=116.0

Q ss_pred             CCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHh-------hccCCCCCCCCCCCC--CCchhhhHHHHHH
Q 018000           60 LGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLS-------RCQDPNGGYGGGPGQ--MPHLATTYAAVNA  130 (362)
Q Consensus        60 l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~-------~~Q~~dGGFgg~pg~--~shl~~Ty~Av~s  130 (362)
                      .|.+-...-.++.+-...++.-|.-.+. ++++.++++++||.       ++|++||||+..++.  .++...|.+++.+
T Consensus        11 ~P~gc~Eq~~~~~~p~~~~~~yl~~~~~-~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~   89 (292)
T cd02897          11 MPYGCGEQNMVNFAPNIYVLDYLKATGQ-LTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKS   89 (292)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHH
Confidence            5654333334555555556666666554 55666677776665       699999999865433  7889999999999


Q ss_pred             HHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc--------CC-CcccchHHHHHHHHHHh--ccC-CHHHHHHHHH
Q 018000          131 LISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD--------AG-EIDVRACYTAISVASIL--NIL-DDELLQNVGN  198 (362)
Q Consensus       131 L~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~--------~g-e~D~r~~Y~al~~~~LL--~~~-~~~~~~~~~~  198 (362)
                      |.........+.--.++.++||.+.|++||+|....        ++ ..++  .-++.++..|.  +.. ....++++++
T Consensus        90 L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~--~~TA~vl~aL~~~g~~~~~~~i~~a~~  167 (292)
T cd02897          90 FAQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEV--ALTAYVLIALLEAGLPSERPVVEKALS  167 (292)
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCc--chHHHHHHHHHhcCCccccHHHHHHHH
Confidence            988763212233235789999999999999997421        11 1111  22333333332  322 2356899999


Q ss_pred             HHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCC---CCCCccc
Q 018000          199 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQ---GVEGGFQ  259 (362)
Q Consensus       199 yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ---~~eGGF~  259 (362)
                      ||.+.+..          ..+..-+..+..||.+++..   ..++++++|.+.+   ...|+|.
T Consensus       168 yL~~~~~~----------~~~~y~~al~a~AL~~~~~~---~~~~~~~~l~~~~~~~~~~~~W~  218 (292)
T cd02897         168 CLEAALDS----------ISDPYTLALAAYALTLAGSE---KRPEALKKLDELAISEDGTKHWS  218 (292)
T ss_pred             HHHHhccc----------CCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhccCCCCCCC
Confidence            99997753          24566677788888888832   2456666665543   3445554

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=99.07  E-value=7.8e-11  Score=96.72  Aligned_cols=104  Identities=20%  Similarity=0.247  Sum_probs=40.7

Q ss_pred             HHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccC-CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhH
Q 018000          146 SKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTF  224 (362)
Q Consensus       146 ~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~-~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~Tf  224 (362)
                      +++++||.+.|+|||||....+  .|+-.+++++.++..++.. ..+.++++++||+++|+.||||+..+.  .+...|.
T Consensus         2 ~~~~~~l~~~Q~~dG~W~~~~~--~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t~   77 (109)
T PF13243_consen    2 KRAAEWLLSQQNPDGSWGYNWG--SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMTA   77 (109)
T ss_dssp             -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred             cccccccccccccccccccccc--ccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHHH
Confidence            5789999999999999987643  4554566666555555431 234579999999999999999998732  3455677


Q ss_pred             HHHHHHHHhccC-CcccHHHHHHHHHhCCC
Q 018000          225 CGLAAMILINEA-DRLDLDALIGWVVFRQG  253 (362)
Q Consensus       225 cALaaL~llg~~-~~~d~~~l~~WL~~rQ~  253 (362)
                      .++++|.+.+.. +...+++.++||.+.|.
T Consensus        78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~  107 (109)
T PF13243_consen   78 AAIAALALAGVYPDDEAVERGLEWILSHQL  107 (109)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence            778888776653 33458999999998874

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=99.01  E-value=4.1e-10  Score=92.43  Aligned_cols=105  Identities=26%  Similarity=0.332  Sum_probs=34.7

Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccch
Q 018000           95 DRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRA  174 (362)
Q Consensus        95 ~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~  174 (362)
                      +++++||++.|++||||+...  .++...|++++.+|...+.....+.|  ++.++||.+.|++||+|......  .+..
T Consensus         2 ~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~ai--~ka~~~l~~~Q~~dG~w~~~~~~--~~~~   75 (109)
T PF13243_consen    2 KRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDEAI--KKAIDWLLSHQNPDGGWGYSGGE--YVSM   75 (109)
T ss_dssp             -----------------------------------------TS-SSBSS--HHHHHHHHH---TTS--S-TS----HHHH
T ss_pred             ccccccccccccccccccccc--cccccccccccccccccCCCCcHHHH--HHHHHHHHHhcCCCCCCCCcCCC--CHHH
Confidence            678999999999999998653  37789999999999999865333444  79999999999999999977322  2222


Q ss_pred             HHHHHHHHHHhcc-CCHHHHHHHHHHHHhccC
Q 018000          175 CYTAISVASILNI-LDDELLQNVGNYILSCQT  205 (362)
Q Consensus       175 ~Y~al~~~~LL~~-~~~~~~~~~~~yI~scQ~  205 (362)
                      +..++.++.+.+. ...+.++++++||++-|.
T Consensus        76 t~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~  107 (109)
T PF13243_consen   76 TAAAIAALALAGVYPDDEAVERGLEWILSHQL  107 (109)
T ss_dssp             HHHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence            3333444433333 245678999999998764

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=98.87  E-value=1e-07  Score=90.65  Aligned_cols=73  Identities=14%  Similarity=0.058  Sum_probs=58.7

Q ss_pred             hHHHHHHHHhhccCCCCCCCCCCCC-CCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeec
Q 018000           93 LEDRTIEFLSRCQDPNGGYGGGPGQ-MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMH  165 (362)
Q Consensus        93 ~~~~~i~~l~~~Q~~dGGFgg~pg~-~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~  165 (362)
                      .+++++++|.++|++||||+..++. .++...|.+++.+|...+.....+.--.++.++||.+.|++||+|...
T Consensus        50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~  123 (282)
T cd02891          50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFREL  123 (282)
T ss_pred             HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCC
Confidence            4567889999999999999988877 899999999999998775421111112578899999999999999864

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=98.66  E-value=5.5e-07  Score=85.18  Aligned_cols=188  Identities=21%  Similarity=0.311  Sum_probs=124.2

Q ss_pred             cCCCCCceec---cCChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhhccCCCCCCCCCCCC---------CCchhh
Q 018000           58 QQLGPSFCSL---DANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGGGPGQ---------MPHLAT  123 (362)
Q Consensus        58 ~~l~~~~~~l---D~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~---------~shl~~  123 (362)
                      ++-+|+|...   ..+.+|++=+++..+.....  .+++...+++++||.+.|++||.|......         ...+..
T Consensus        10 ~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~l   89 (246)
T PF07678_consen   10 RRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIAL   89 (246)
T ss_dssp             B-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHH
T ss_pred             CCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeee
Confidence            4568888765   45788999999999998876  457888999999999999999999753110         124556


Q ss_pred             hHHHHHHHHHcCCCC----CCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccC-CHHHHHHHHH
Q 018000          124 TYAAVNALISLGGEK----SLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-DDELLQNVGN  198 (362)
Q Consensus       124 Ty~Av~sL~ilg~~~----~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~-~~~~~~~~~~  198 (362)
                      |.+.+.+|.-.+.--    .......+++++||.+...             .+...|....++..|... .....+.+.+
T Consensus        90 TA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~-------------~~~~~Y~lAl~aYAL~la~~~~~~~~~~~  156 (246)
T PF07678_consen   90 TAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLD-------------NIQDPYTLALVAYALALAGDSPQASKLLN  156 (246)
T ss_dssp             HHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHG-------------CTSSHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             hHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhcc-------------ccCCHHHHHHHHHHHHhhcccchHHHHHH
Confidence            666666666555210    0111235788999986511             123366654444434333 4567788889


Q ss_pred             HHHhccCCCCCcCCCCCCC--------------CchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccC
Q 018000          199 YILSCQTYEGGIAGEPGSE--------------AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG  260 (362)
Q Consensus       199 yI~scQ~~dGGFg~~pg~e--------------sh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~G  260 (362)
                      -|.+....+||....+...              .....|.+||.++...  .+.......++||.+.|+..|||..
T Consensus       157 ~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~--~~~~~~~~iv~WL~~qr~~~Ggf~S  230 (246)
T PF07678_consen  157 KLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR--GDLEEASPIVRWLISQRNSGGGFGS  230 (246)
T ss_dssp             HHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCTTTTSSTSS
T ss_pred             HHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcCCCCccCc
Confidence            9988887777753322211              2356788888666655  4445678999999999999999975

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=98.32  E-value=4.6e-06  Score=79.26  Aligned_cols=107  Identities=13%  Similarity=0.108  Sum_probs=78.5

Q ss_pred             HHHHHHHHhcCCCCCceeeccCC-CcccchHHHHHHHHHHh---ccCCHHHHHHHHHHHHhccCCCCCcCCCCC------
Q 018000          146 SKVYTFLKCMKDPSGAFRMHDAG-EIDVRACYTAISVASIL---NILDDELLQNVGNYILSCQTYEGGIAGEPG------  215 (362)
Q Consensus       146 ~~~~~fL~s~Q~~dGgF~~~~~g-e~D~r~~Y~al~~~~LL---~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg------  215 (362)
                      ++.+++|.++|++||||...++. ..|+..|-.++-.+...   +..++..++++++||.+.|..+|+|.....      
T Consensus        52 ~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~  131 (282)
T cd02891          52 RKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHREM  131 (282)
T ss_pred             HHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhh
Confidence            57899999999999999877655 56664444433333322   234556789999999999999999986433      


Q ss_pred             ---CCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCC
Q 018000          216 ---SEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQ  252 (362)
Q Consensus       216 ---~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ  252 (362)
                         ..+....|.+++.+|...|......+.+.++||..+.
T Consensus       132 ~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~  171 (282)
T cd02891         132 KGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQL  171 (282)
T ss_pred             cCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhc
Confidence               2244467889999998888754446789999999765

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]

Probab=98.25  E-value=1.9e-05  Score=83.14  Aligned_cols=231  Identities=15%  Similarity=0.211  Sum_probs=146.3

Q ss_pred             HHHHHhccCCCCCc---------eeccCChhHHHHHHHHHHHHhCCCCCHHh---HHHHHHHHhhccCCC----------
Q 018000           51 EYLLRGLQQLGPSF---------CSLDANRPWICYWILHSMALLGEFVDADL---EDRTIEFLSRCQDPN----------  108 (362)
Q Consensus        51 ~yl~~~l~~l~~~~---------~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~---~~~~i~~l~~~Q~~d----------  108 (362)
                      +++++++.++|+-.         ++.. +..|.+=++|.++-.-+..  ++.   ..+.-+|+.+-|-++          
T Consensus       388 ~~Fkkhl~Ri~d~lw~gedGmkmq~~~-sQ~Wdt~falqalla~~~~--~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~y  464 (760)
T KOG0497|consen  388 DAFKKHLARIPDFLWIAEDGMKMQGFN-SQLWDTAFALQALLAAGLV--DEFRSTLVKAYDFLKKSQVRENPPGDFKKMY  464 (760)
T ss_pred             HHHHHHhccccCeEEEcCCCceEeecc-hhHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhhhcccccCCCcchhhhe
Confidence            45666666555422         2333 7899999999887665543  443   456778998887543          


Q ss_pred             -----CCCCCCCCC--CCchhhhHHHHHHHHHcCCC---CCCChhhHHH---HHHHHHhcCCCCCceeec----------
Q 018000          109 -----GGYGGGPGQ--MPHLATTYAAVNALISLGGE---KSLPSINRSK---VYTFLKCMKDPSGAFRMH----------  165 (362)
Q Consensus       109 -----GGFgg~pg~--~shl~~Ty~Av~sL~ilg~~---~~l~~idr~~---~~~fL~s~Q~~dGgF~~~----------  165 (362)
                           |||+.+...  .+=.-+|.=|+.+..+++..   .....+|+++   .++.|..+|..+|||..-          
T Consensus       465 R~~~kG~wtfS~~d~gw~vsDctaEal~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE  544 (760)
T KOG0497|consen  465 RHISKGGWTFSDRDQGWPVSDCTAEALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLE  544 (760)
T ss_pred             eccccccccccccccceeeccccHHHHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHH
Confidence                 333332211  22334566666666666542   1235667776   466788999999999752          


Q ss_pred             ------cCCCcccchHH--HH---HHHHHHhccC-C-------HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHH
Q 018000          166 ------DAGEIDVRACY--TA---ISVASILNIL-D-------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCG  226 (362)
Q Consensus       166 ------~~ge~D~r~~Y--~a---l~~~~LL~~~-~-------~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcA  226 (362)
                            +.+..++...|  |+   ++.+...... +       ...++++++||.+.|.+||.|=+.-|. --.+-|+.|
T Consensus       545 ~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgv-CFtY~t~Fa  623 (760)
T KOG0497|consen  545 LLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGV-CFTYGTWFA  623 (760)
T ss_pred             hcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhH-HHHHHHHHh
Confidence                  12445554444  32   3333333221 1       135778999999999999998654332 234568899


Q ss_pred             HHHHHHhccCC--cccHHHHHHHHHhCCCCCCcccCCC----CC--------CCcccccchHHHHHHHHhhhh
Q 018000          227 LAAMILINEAD--RLDLDALIGWVVFRQGVEGGFQGRT----NK--------LVDGCYSFWQGGVFALLRRFH  285 (362)
Q Consensus       227 LaaL~llg~~~--~~d~~~l~~WL~~rQ~~eGGF~GR~----nK--------lvD~CYsfW~~a~l~ll~~~~  285 (362)
                      +-+|+..|+..  ...+++++++|++.|+.+||+.-..    +|        -..+--++|+.-.|-+.+...
T Consensus       624 ~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~  696 (760)
T KOG0497|consen  624 LRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAE  696 (760)
T ss_pred             cchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcc
Confidence            99999999863  3458999999999999999997642    11        133445678877776666543

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=98.05  E-value=1.4e-05  Score=82.56  Aligned_cols=209  Identities=18%  Similarity=0.153  Sum_probs=133.4

Q ss_pred             hhhHHHHHHHHHHhcc--CCCCCcee-------ccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCC
Q 018000           43 ELQRKNHVEYLLRGLQ--QLGPSFCS-------LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGG  113 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~--~l~~~~~~-------lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg  113 (362)
                      -|.+..|.++....+.  ..|+++..       -|+....     -...++.+. -+..+.++.++||..+|+..|||..
T Consensus       229 ~L~~kq~~~~~~~~~~~~~~~g~W~f~~~~~~ypd~d~T~-----~~~~al~~~-~~~~~~~~~l~~V~~~q~~~g~~a~  302 (517)
T COG1657         229 FLLDKQVLKYADWAVKRKFSPGGWGFSNINTGYPDADDTA-----GVVRALIGV-QSLPNFELGLDWVLYMQNKLGGLAV  302 (517)
T ss_pred             hhHHHHHHHhhccccccccCCCccceeecccCCCCchhhh-----HHHHHHHhh-cchhhHHhhhhHhhhcccccCceee
Confidence            4666677777666554  23444431       2333211     112233333 2234556699999999999999876


Q ss_pred             CCCC-------------------CCchhhhHHHHHHHHHcCC-CCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccc
Q 018000          114 GPGQ-------------------MPHLATTYAAVNALISLGG-EKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVR  173 (362)
Q Consensus       114 ~pg~-------------------~shl~~Ty~Av~sL~ilg~-~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r  173 (362)
                      .+-.                   .+-+..|-..+.+|+.+.. .++.+....++.+.||++.|.++|+|.+..+    ++
T Consensus       303 ~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~----v~  378 (517)
T COG1657         303 YEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWG----VC  378 (517)
T ss_pred             eccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEE----EE
Confidence            4321                   2223333333444444332 1111123457899999999999999998874    67


Q ss_pred             hHHHHHHHHHHhccCCH-----HHHHHHHHHHHhccCCCCCcCCCCCC---------C-CchhHhHHHHHHHHHhccCCc
Q 018000          174 ACYTAISVASILNILDD-----ELLQNVGNYILSCQTYEGGIAGEPGS---------E-AHGGYTFCGLAAMILINEADR  238 (362)
Q Consensus       174 ~~Y~al~~~~LL~~~~~-----~~~~~~~~yI~scQ~~dGGFg~~pg~---------e-sh~~~TfcALaaL~llg~~~~  238 (362)
                      .+|..+..++.+....+     ..+.+++.|+.+||+.+|||+..-..         + +-.-.|-+|+..+....++..
T Consensus       379 ~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~  458 (517)
T COG1657         379 YIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQ  458 (517)
T ss_pred             EEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccch
Confidence            88888888777665432     46889999999999999999975222         2 233456777777777666644


Q ss_pred             ccHHHHHHHHHhCCCCCCcccCC
Q 018000          239 LDLDALIGWVVFRQGVEGGFQGR  261 (362)
Q Consensus       239 ~d~~~l~~WL~~rQ~~eGGF~GR  261 (362)
                      .-++..++.+.++|.++|-++++
T Consensus       459 ~~i~~~~~~~~~~~~~~g~~~~~  481 (517)
T COG1657         459 EAIKPGINLLVSDQEPDGSWREA  481 (517)
T ss_pred             hhhcccccccccCcCCCCccccc
Confidence            34788899999999988777665

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=98.03  E-value=3.8e-05  Score=72.64  Aligned_cols=150  Identities=15%  Similarity=0.149  Sum_probs=97.1

Q ss_pred             HHHhhccCCCCCCCCC-CCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc-------CCCc
Q 018000           99 EFLSRCQDPNGGYGGG-PGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD-------AGEI  170 (362)
Q Consensus        99 ~~l~~~Q~~dGGFgg~-pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~-------~ge~  170 (362)
                      +-+++.+++||||+.. ....++...|.+++-.|......-..+.-...+.++||.+.|++||+|....       .|..
T Consensus         4 qr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~   83 (246)
T PF07678_consen    4 QRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGV   83 (246)
T ss_dssp             HHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGG
T ss_pred             HHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCC
Confidence            3467889999999988 6778999999999999998875311222224678999999999999997531       1212


Q ss_pred             ccchHHHHHHHHHHhccC---------CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccH
Q 018000          171 DVRACYTAISVASILNIL---------DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDL  241 (362)
Q Consensus       171 D~r~~Y~al~~~~LL~~~---------~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~  241 (362)
                      +-..+.+|.++.+|+...         ....++++.+||.+-..          ...+. |+ -||.+.++.-..+..+.
T Consensus        84 ~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~----------~~~~~-Y~-lAl~aYAL~la~~~~~~  151 (246)
T PF07678_consen   84 EDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLD----------NIQDP-YT-LALVAYALALAGDSPQA  151 (246)
T ss_dssp             THHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHG----------CTSSH-HH-HHHHHHHHHHTTTCHHH
T ss_pred             CCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhcc----------ccCCH-HH-HHHHHHHHHhhcccchH
Confidence            233467777777776543         13568899999977511          01122 22 34444444322145567


Q ss_pred             HHHHHHHHhCCCCCCcccC
Q 018000          242 DALIGWVVFRQGVEGGFQG  260 (362)
Q Consensus       242 ~~l~~WL~~rQ~~eGGF~G  260 (362)
                      ..++.-|.++...+||...
T Consensus       152 ~~~~~~L~~~a~~~~~~~~  170 (246)
T PF07678_consen  152 SKLLNKLNSMATTEGGLRY  170 (246)
T ss_dssp             HHHHHHHHCHCEETTTTCE
T ss_pred             HHHHHHHHHhhhhccccCc
Confidence            8888888887776666633

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=97.01  E-value=0.0024  Score=66.28  Aligned_cols=199  Identities=20%  Similarity=0.260  Sum_probs=122.1

Q ss_pred             CChhHHHHHHHHHHHHhCCCCCH-------------HhHHHHHHHHhhccCCCCCCCCCC--CCCCchhhhHHHHHHHHH
Q 018000           69 ANRPWICYWILHSMALLGEFVDA-------------DLEDRTIEFLSRCQDPNGGYGGGP--GQMPHLATTYAAVNALIS  133 (362)
Q Consensus        69 ~sr~w~~Yw~l~sL~lLg~~~~~-------------~~~~~~i~~l~~~Q~~dGGFgg~p--g~~shl~~Ty~Av~sL~i  133 (362)
                      .+.-|-..|+.-.+.-=|.--.+             ....+..+|-...+..-||++...  ...++...|-.++.++..
T Consensus       197 ~~q~wD~~f~~~~~~~~g~~~~~~~aiaka~~~L~~kq~~~~~~~~~~~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~  276 (517)
T COG1657         197 GSQVWDGGFIRRALLVAGLAETPIPAIAKALMFLLDKQVLKYADWAVKRKFSPGGWGFSNINTGYPDADDTAGVVRALIG  276 (517)
T ss_pred             ccccccchhhhhhhhhcCccccchHhHHhhhhhhHHHHHHHhhccccccccCCCccceeecccCCCCchhhhHHHHHHHh
Confidence            35667777777666554431111             111222233223333345555433  367888888888888877


Q ss_pred             cCCCCCCChhhHHHHHHHHHhcCCCCCceeeccC----------------CCcccchHHH---HHHHHHHhcc-CC---H
Q 018000          134 LGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDA----------------GEIDVRACYT---AISVASILNI-LD---D  190 (362)
Q Consensus       134 lg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~----------------ge~D~r~~Y~---al~~~~LL~~-~~---~  190 (362)
                      ..+     ..+-++.+.|+..+|+..|+|...+.                ..+|....=|   ....+.-++. ++   .
T Consensus       277 ~~~-----~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~  351 (517)
T COG1657         277 VQS-----LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDG  351 (517)
T ss_pred             hcc-----hhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccccC
Confidence            763     34456799999999999999986321                1111100111   0111111222 22   2


Q ss_pred             HHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc--ccHHHHHHHHHhCCCCCCcccCCCCCCCcc
Q 018000          191 ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVEGGFQGRTNKLVDG  268 (362)
Q Consensus       191 ~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~--~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~  268 (362)
                      ..++++++||++-|..+|-+-+.=+. --.+-|.-++.+|.+.|..+.  .-+.+++.|+..+|+++|||..--+-.+|.
T Consensus       352 ~~i~~a~e~LL~~Q~~~GsW~g~w~v-~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~  430 (517)
T COG1657         352 QPIERALEWLLSDQEPDGSWYGRWGV-CYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDP  430 (517)
T ss_pred             CcccHHHhhhhhhccccCceeeEEEE-EEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCccccccccccc
Confidence            45889999999999999976543111 123345566777777776642  237899999999999999999988888888


Q ss_pred             cccch
Q 018000          269 CYSFW  273 (362)
Q Consensus       269 CYsfW  273 (362)
                      -|++=
T Consensus       431 ~~~~t  435 (517)
T COG1657         431 VYTGT  435 (517)
T ss_pred             ccccc
Confidence            88764

>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.076  Score=61.63  Aligned_cols=201  Identities=16%  Similarity=0.198  Sum_probs=114.2

Q ss_pred             ccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHH-------hhccCCCCCCCCC--CCCCCchhhhHHH
Q 018000           57 LQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFL-------SRCQDPNGGYGGG--PGQMPHLATTYAA  127 (362)
Q Consensus        57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l-------~~~Q~~dGGFgg~--pg~~shl~~Ty~A  127 (362)
                      |..+|.+-......-..-.++++.=|...+. +.++.+++++++|       +..+++||.|+..  ....+..+-|.+.
T Consensus       930 Ll~lP~GcGEQnMi~faPni~v~~YL~~t~q-~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafv 1008 (1436)
T KOG1366|consen  930 LLRLPYGCGEQNMINFAPNIYVLKYLPKTNQ-LTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFV 1008 (1436)
T ss_pred             hccCCCCcccceeecccchhhHHHHHhhhhc-cChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHH
Confidence            3345644333222222234456666666666 6677888888886       5677899998743  2345666677777


Q ss_pred             HHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc--------CCCcc--------------cc---hHHHH----
Q 018000          128 VNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD--------AGEID--------------VR---ACYTA----  178 (362)
Q Consensus       128 v~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~--------~ge~D--------------~r---~~Y~a----  178 (362)
                      +-++......-.++.--..++++||...|+++|+|....        ++..+              +.   .++..    
T Consensus      1009 lr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e~~~v~~~~~qg~l~~~~~l~~~~l~~~~~~~~~~~~~a~~~~~ 1088 (1436)
T KOG1366|consen 1009 LRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKEVGEVLHNEMQGGLQDIVALTAIVLSVILDVDNASIQKAVAYLE 1088 (1436)
T ss_pred             HHHhhhccCceEecHHHHHHHHHHHHHhhccCceEeccccccchhhhcCCCCcceeeeEeeeeeccchhhHHHHHHHHHh
Confidence            777766643212232234689999999999999997531        12222              11   11111    


Q ss_pred             -------------HHHHHHhcc-CCHHHHHHHHHHHHhccCCCCC----cCC----------CC-CCCCchhHhHHHHHH
Q 018000          179 -------------ISVASILNI-LDDELLQNVGNYILSCQTYEGG----IAG----------EP-GSEAHGGYTFCGLAA  229 (362)
Q Consensus       179 -------------l~~~~LL~~-~~~~~~~~~~~yI~scQ~~dGG----Fg~----------~p-g~esh~~~TfcALaa  229 (362)
                                   ..++..+.. ..+...+.+.. +.+--...|+    |..          .+ ....+...|.+||.+
T Consensus      1089 ~~~~~~~~~~~~~a~~ayAl~l~~sp~a~~~~~~-l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~s~~VE~tsYaLL~ 1167 (1436)
T KOG1366|consen 1089 ESLDSGSMDVYTVAITAYALQLAKSPQAAKALAK-LKSLARVEGDRRYWWASALKAKNAVKYSPQARSIDVETTAYALLA 1167 (1436)
T ss_pred             hccCccccccchHHHHHHHHHhccCchHHHHHHh-hhhhhcccCCceeeeeccccccCcccCCCccchhhccchHHHHHH
Confidence                         111111111 11122222222 3332222232    111          11 122477889999999


Q ss_pred             HHHhccCCcccHHHHHHHHHhCCCCCCcccCC
Q 018000          230 MILINEADRLDLDALIGWVVFRQGVEGGFQGR  261 (362)
Q Consensus       230 L~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR  261 (362)
                      +.++...+  -+...++||.+.+...|||+--
T Consensus      1168 ~~~~~~~~--~~~pivrWl~~qr~~~GGf~ST 1197 (1436)
T KOG1366|consen 1168 YLLLAQVD--YALPIVRWLVEQRNALGGFSST 1197 (1436)
T ss_pred             HHHhcccC--cCchhHhhhhhhhcccCceeeh
Confidence            99988765  4667899999988899999854

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=96.15  E-value=0.069  Score=51.94  Aligned_cols=116  Identities=15%  Similarity=0.107  Sum_probs=65.2

Q ss_pred             HHhHHHHHHHHhhccCCCCCCCCC-CCC-CCchhhhH------HHHHHHHHcCC-CCCCChhh----------HHHHHHH
Q 018000           91 ADLEDRTIEFLSRCQDPNGGYGGG-PGQ-MPHLATTY------AAVNALISLGG-EKSLPSIN----------RSKVYTF  151 (362)
Q Consensus        91 ~~~~~~~i~~l~~~Q~~dGGFgg~-pg~-~shl~~Ty------~Av~sL~ilg~-~~~l~~id----------r~~~~~f  151 (362)
                      .+-..++++||++.|+++|||... |-. .-|-..||      .++..|..+.. ...+..++          .++.++|
T Consensus        66 ~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~  145 (290)
T TIGR02474        66 RDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIEC  145 (290)
T ss_pred             HHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHH
Confidence            345678999999999999999853 210 11221222      33444433321 11112221          2578999


Q ss_pred             HHhcCCCCCceeeccCCCcc----------------cchHHHHHHHHHHhccC--CH---HHHHHHHHHHHhccCC
Q 018000          152 LKCMKDPSGAFRMHDAGEID----------------VRACYTAISVASILNIL--DD---ELLQNVGNYILSCQTY  206 (362)
Q Consensus       152 L~s~Q~~dGgF~~~~~ge~D----------------~r~~Y~al~~~~LL~~~--~~---~~~~~~~~yI~scQ~~  206 (362)
                      |++.|.++||+...+..-.|                +.+.=++-.+..|+.+.  ++   ..++.+++|+.+..-.
T Consensus       146 ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~  221 (290)
T TIGR02474       146 ILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIR  221 (290)
T ss_pred             HHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCC
Confidence            99999998877654321111                11222334445555543  22   3467899999988743

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=95.67  E-value=0.029  Score=54.53  Aligned_cols=95  Identities=18%  Similarity=0.151  Sum_probs=58.4

Q ss_pred             CCCcccchHHHHHHHHHHh-ccC----CHHHHHHHHHHHHhccCCCCCcCCCCC--CCCchhHhHH---HHHHHHHhcc-
Q 018000          167 AGEIDVRACYTAISVASIL-NIL----DDELLQNVGNYILSCQTYEGGIAGEPG--SEAHGGYTFC---GLAAMILINE-  235 (362)
Q Consensus       167 ~ge~D~r~~Y~al~~~~LL-~~~----~~~~~~~~~~yI~scQ~~dGGFg~~pg--~esh~~~Tfc---ALaaL~llg~-  235 (362)
                      .+..|=..|+..+.-+.-+ ..-    -...+.++++||++.|+++|||...--  ..-|...||+   .+.+|.+|.. 
T Consensus        38 ~~TiDN~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i  117 (290)
T TIGR02474        38 SGTIDNGATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDI  117 (290)
T ss_pred             cccccCccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHH
Confidence            3456667788776554332 111    135678999999999999999986421  1123333333   2333444321 


Q ss_pred             ----CC------------cccHHHHHHHHHhCCCCCCcccCC
Q 018000          236 ----AD------------RLDLDALIGWVVFRQGVEGGFQGR  261 (362)
Q Consensus       236 ----~~------------~~d~~~l~~WL~~rQ~~eGGF~GR  261 (362)
                          ..            ..-+++++.+|+.-|.+.||..++
T Consensus       118 ~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~  159 (290)
T TIGR02474       118 ANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTV  159 (290)
T ss_pred             HhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCc
Confidence                10            113689999999999988887764

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>PLN02279 ent-kaur-16-ene synthase

Probab=94.00  E-value=0.26  Score=54.25  Aligned_cols=210  Identities=14%  Similarity=0.167  Sum_probs=106.6

Q ss_pred             hhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCC----CC
Q 018000           44 LQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQ----MP  119 (362)
Q Consensus        44 l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~----~s  119 (362)
                      +.-+.+++-+++.|+...-+-.      +.=+-|+.-.-+. +..-.+ .-...++||+..|.+||+||..+..    .-
T Consensus        33 ~~~~~~~~~i~~~l~~~e~s~s------~YDTAWvamv~~~-~~~~~p-~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D  104 (784)
T PLN02279         33 VSFEGTKERIKKMFDKVELSVS------SYDTAWVAMVPSP-NSQQAP-LFPECVKWLLENQLEDGSWGLPHDHPLLVKD  104 (784)
T ss_pred             ccchhHHHHHHHHhccCcCCCc------hhhhHHHHhcccC-CCCCCC-CChHHHHHHHhcCCCCCCCCCCCCCcchhHH
Confidence            4456777888887775411111      1223354433222 221111 2357899999999999999965321    23


Q ss_pred             chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh----cCC----CCCceeec-cC-----CCcccchHHHHHHHHHHh
Q 018000          120 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC----MKD----PSGAFRMH-DA-----GEIDVRACYTAISVASIL  185 (362)
Q Consensus       120 hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s----~Q~----~dGgF~~~-~~-----ge~D~r~~Y~al~~~~LL  185 (362)
                      -+.+|.|||.||..-+..  -..+  ++-+.||.+    +..    .-=||..- |.     .+.++...|.--.+-.++
T Consensus       105 ~ll~TlAcvlAL~~w~~~--~~~~--~~gl~fi~~n~~~~~d~~~~~pvGfei~fP~ll~~a~~~gl~~~~~~~~l~~~~  180 (784)
T PLN02279        105 ALSSTLASILALKKWGVG--EEQI--NKGLQFIELNSASVTDEKQHKPIGFDIIFPGMIEYAKDLDLNLPLGSEVVDAML  180 (784)
T ss_pred             hhHHHHHHHHHHHHHhcC--cccc--hhhHHHHHHHHHhhcccccCCCceEEEehHHHHHHHHHcCCCCCCChHHHHHHH
Confidence            568999999999886532  1122  233355552    111    01345431 10     001111122111111111


Q ss_pred             ccCCH------------------HHHHHHH---H--HHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHH
Q 018000          186 NILDD------------------ELLQNVG---N--YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLD  242 (362)
Q Consensus       186 ~~~~~------------------~~~~~~~---~--yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~  242 (362)
                      .....                  ...++..   +  =|...|..+|.|..+|.      .|.+++.     . .  -| +
T Consensus       181 ~~r~~~l~~~~~~~~~~~~~~l~~s~Egl~~~~dw~~v~~~q~~~Gs~~~SPs------aTAa~l~-----~-~--~~-~  245 (784)
T PLN02279        181 HKRDLDLKSGGGSNTKGREAYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPS------TTAAAFS-----H-L--QN-A  245 (784)
T ss_pred             HhhhHHHhhcchhhcCCCcchHHHHHhhccccccHHHHHhhcCCCCCcccCcH------HHHHHHH-----c-c--CC-h
Confidence            11100                  1112322   2  25678999999998764      3444432     1 1  12 7


Q ss_pred             HHHHHHHhCCC-CCCcccCCCCC-CCcccccchHHHHHHHHhh
Q 018000          243 ALIGWVVFRQG-VEGGFQGRTNK-LVDGCYSFWQGGVFALLRR  283 (362)
Q Consensus       243 ~l~~WL~~rQ~-~eGGF~GR~nK-lvD~CYsfW~~a~l~ll~~  283 (362)
                      ++++||.+-+. .+||   -|+- ++|....-|++.+|.-++-
T Consensus       246 ~~~~yL~~~~~~~~g~---vP~~yp~~~fe~l~lvd~L~rlGi  285 (784)
T PLN02279        246 GCLRYLRSLLQKFGNA---VPTVYPLDQYARLSMVDTLERLGI  285 (784)
T ss_pred             HHHHHHHHHHHhcCCC---CCCCCcccHHHHhHHHHHHHHhCC
Confidence            88899976554 4444   4443 4666666677777755543

>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function

Probab=90.83  E-value=4.2  Score=42.75  Aligned_cols=181  Identities=18%  Similarity=0.235  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHhCCCCCHH---hHHHHHHHHhhccCCCCCCCCCCCCC-----------CchhhhHH-----HHHHHHHc
Q 018000           74 ICYWILHSMALLGEFVDAD---LEDRTIEFLSRCQDPNGGYGGGPGQM-----------PHLATTYA-----AVNALISL  134 (362)
Q Consensus        74 ~~Yw~l~sL~lLg~~~~~~---~~~~~i~~l~~~Q~~dGGFgg~pg~~-----------shl~~Ty~-----Av~sL~il  134 (362)
                      +-+|.-.+..++-..-+++   ..+++|+.|.+||.+||=++..+...           .|-..|..     ++......
T Consensus        62 ~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~t  141 (520)
T PF07944_consen   62 VGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEAT  141 (520)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHHHH
Confidence            4466655444443322333   35568999999999998555433211           23334432     33333445


Q ss_pred             CCCCCCChhhHHHHHHHH---HhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCH-HHHHHHHHHHHhcc-CC---
Q 018000          135 GGEKSLPSINRSKVYTFL---KCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDD-ELLQNVGNYILSCQ-TY---  206 (362)
Q Consensus       135 g~~~~l~~idr~~~~~fL---~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~-~~~~~~~~yI~scQ-~~---  206 (362)
                      |++.+++.+  .++.+|+   .+...++-.......+...+     -.++..|..+-.+ ...+-+..|+...- .+   
T Consensus       142 G~~~~L~v~--~k~ad~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~  214 (520)
T PF07944_consen  142 GNERALDVA--TKLADWVYRRLSRLGPEPGQKMGYPEHGGI-----NEALVRLYEITGDERYLDLAEYFVDQRGFDPYDL  214 (520)
T ss_pred             CcHHHHHHH--HHHHHHHHHHhccCCHHHhhcccccccchH-----HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCch
Confidence            665444443  5778888   33322221111111111122     1334444443322 33333333433221 11   


Q ss_pred             CCCcCCCCCCC-----Cchh---HhHHHHHHHHHhccCC-ccc-HHHHHHHHHhCCC-CCCcccCC
Q 018000          207 EGGIAGEPGSE-----AHGG---YTFCGLAAMILINEAD-RLD-LDALIGWVVFRQG-VEGGFQGR  261 (362)
Q Consensus       207 dGGFg~~pg~e-----sh~~---~TfcALaaL~llg~~~-~~d-~~~l~~WL~~rQ~-~eGGF~GR  261 (362)
                      .-+....|+.+     +|+.   |-+.+++-+..+...+ ..+ .+++.+.+..+++ ..||+.++
T Consensus       215 ~~~~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~  280 (520)
T PF07944_consen  215 AYGQDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSD  280 (520)
T ss_pred             hhcCccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCC
Confidence            12233334433     5553   5666666666654322 222 5777888887777 77888877

One member of this family is annotated as a possible arabinosidase, but no references were found to back this.

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals

Probab=90.21  E-value=0.73  Score=45.62  Aligned_cols=140  Identities=17%  Similarity=0.103  Sum_probs=79.9

Q ss_pred             CchhhhHH----HHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhcc----CC-
Q 018000          119 PHLATTYA----AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI----LD-  189 (362)
Q Consensus       119 shl~~Ty~----Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~----~~-  189 (362)
                      .|..++|+    +|.+|+..+.     .+....+.+++...+.. ..|..  .-.+|+    .|++++++.-.    .. 
T Consensus       139 g~P~TnyYq~sL~vLALCv~~~-----~~~~~~v~kL~~~~~~~-~~~~~--~~sVDT----~AmA~LALtCv~~~~~~~  206 (326)
T PF01122_consen  139 GHPLTNYYQYSLGVLALCVHNK-----RVSLSVVAKLLKAENHN-FYHGS--QFSVDT----GAMAVLALTCVKNSNPNG  206 (326)
T ss_dssp             TS-SSGHHHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHSS-TSS-S--TCHHHH----HHHHHHHHHHHHTTTSTT
T ss_pred             CCCCCcccchHHHHHHHHccCC-----CcCHHHHHHHHHHHHhh-cccCC--CCCccH----HHHHHHHHHHHhccCcCc
Confidence            34455553    4556666653     34445566777665553 22222  224566    55666655321    11 


Q ss_pred             -------HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc---ccHHHHHHHHHhCCCCCCccc
Q 018000          190 -------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR---LDLDALIGWVVFRQGVEGGFQ  259 (362)
Q Consensus       190 -------~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~---~d~~~l~~WL~~rQ~~eGGF~  259 (362)
                             ...++++++.|++-|..||-||.       .+.|--|+.+|...+....   .+-.++++++... ..+|.|+
T Consensus       207 ~~~~~~i~~~i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~-i~~G~F~  278 (326)
T PF01122_consen  207 PELRRRIQQAIRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKE-ISQGAFQ  278 (326)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHH-HTTTTT-
T ss_pred             HhHHHHHHHHHHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH-hhcCCCC
Confidence                   13467888999999999999984       4668888998888877532   4578899999863 3578887


Q ss_pred             CCCCCCCcccccchHHHHHHHHhhhhhcc
Q 018000          260 GRTNKLVDGCYSFWQGGVFALLRRFHSII  288 (362)
Q Consensus       260 GR~nKlvD~CYsfW~~a~l~ll~~~~~~~  288 (362)
                      .-          -=+-..||.|..-...|
T Consensus       279 nP----------~a~aQiLPaL~gKTYLD  297 (326)
T PF01122_consen  279 NP----------MAIAQILPALNGKTYLD  297 (326)
T ss_dssp             SH----------HHHHHHHHHHTT--GGG
T ss_pred             CH----------HHHHHHHHHHcCCCccc
Confidence            53          22445565555544444

Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.

>PLN02592 ent-copalyl diphosphate synthase

Probab=82.72  E-value=2.3  Score=47.05  Aligned_cols=56  Identities=21%  Similarity=0.236  Sum_probs=39.0

Q ss_pred             HHHHHHHhhccCCCCCCCCCCC--CCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh
Q 018000           95 DRTIEFLSRCQDPNGGYGGGPG--QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC  154 (362)
Q Consensus        95 ~~~i~~l~~~Q~~dGGFgg~pg--~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s  154 (362)
                      ...++||+..|.+|||||..+.  ..--+.+|.|||.||..-+..  -..  .++.+.||.+
T Consensus       118 P~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~--~~~--i~rGl~fi~~  175 (800)
T PLN02592        118 PSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH--PEK--CEKGMSFFRE  175 (800)
T ss_pred             HHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc--HHH--HHHHHHHHHH
Confidence            4789999999999999997533  224578899999999775421  012  2456666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	362
1o1r_B	427	Structure Of Fpt Bound To Ggpp Length = 427		5e-71
3pz4_B	426	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		5e-71
2zir_B	440	Crystal Structure Of Rat Protein Farnesyltransferas		5e-71
1ft1_B	437	Crystal Structure Of Protein Farnesyltransferase At		5e-71
1n94_B	397	Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf		5e-71
1ft2_B	401	Co-Crystal Structure Of Protein Farnesyltransferase		6e-71
1nl4_B	401	Crystal Structure Of Rat Farnesyl Transferase In Co		7e-71
1n95_B	402	Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf		8e-71
1jcq_B	437	Crystal Structure Of Human Protein Farnesyltransfer		9e-71
2h6h_B	437	Y365f Protein Farnesyltransferase Mutant Complexed		9e-71
2h6g_B	437	W102t Protein Farnesyltransferase Mutant Complexed		3e-69
2h6i_B	437	W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN		3e-69
3euv_B	427	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		2e-68
3q73_B	520	Cryptococcus Neoformans Protein Farnesyltransferase		4e-44
1dce_B	331	Crystal Structure Of Rab Geranylgeranyltransferase		1e-24
3pz1_B	330	Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)		1e-24
1n4p_B	377	Protein Geranylgeranyltransferase Type-I Complexed		3e-22
3dra_B	390	Candida Albicans Protein Geranylgeranyltransferase-		4e-11

>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427

Iteration: 1
 Score =  264 bits (675), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P+        Q PHLA TYA
Sbjct: 96  LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ 
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426

Iteration: 1
 Score =  264 bits (675), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 41  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 94
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P+        Q PHLA TYA
Sbjct: 95  LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 154
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 155 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 214
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ 
Sbjct: 215 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 274
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 275 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 312

>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440

Iteration: 1
 Score =  264 bits (675), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 45  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 98
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P+        Q PHLA TYA
Sbjct: 99  LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 158
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 159 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 218
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ 
Sbjct: 219 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 278
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 279 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 316

>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437

Iteration: 1
 Score =  264 bits (675), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P+        Q PHLA TYA
Sbjct: 96  LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ 
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397

Iteration: 1
 Score =  264 bits (675), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 21  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 74
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P+        Q PHLA TYA
Sbjct: 75  LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 134
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 135 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 194
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ 
Sbjct: 195 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 254
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 255 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 292

>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401

Iteration: 1
 Score =  264 bits (674), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 21  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 74
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P+        Q PHLA TYA
Sbjct: 75  LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 134
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 135 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 194
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ 
Sbjct: 195 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 254
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 255 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 292

>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401

Iteration: 1
 Score =  264 bits (674), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 20  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 73
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P+        Q PHLA TYA
Sbjct: 74  LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 133
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 134 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 193
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ 
Sbjct: 194 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 253
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 254 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 291

>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402

Iteration: 1
 Score =  263 bits (673), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 21  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 74
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P+        Q PHLA TYA
Sbjct: 75  LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 134
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 135 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 194
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ 
Sbjct: 195 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 254
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 255 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 292

>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437

Iteration: 1
 Score =  263 bits (673), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 134/278 (48%), Positives = 172/278 (61%), Gaps = 10/278 (3%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P         Q PHLA TYA
Sbjct: 96  LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++     L+L +L+ 
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437

Iteration: 1
 Score =  263 bits (673), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 134/278 (48%), Positives = 172/278 (61%), Gaps = 10/278 (3%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P         Q PHLA TYA
Sbjct: 96  LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++     L+L +L+ 
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437

Iteration: 1
 Score =  258 bits (660), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 133/278 (47%), Positives = 171/278 (61%), Gaps = 10/278 (3%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RP +CYWILHS+ LL E +   +     +FL  CQ P         Q PHLA TYA
Sbjct: 96  LDASRPTLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++     L+L +L+ 
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437

Iteration: 1
 Score =  258 bits (660), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 133/278 (47%), Positives = 171/278 (61%), Gaps = 10/278 (3%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RP +CYWILHS+ LL E +   +     +FL  CQ P         Q PHLA TYA
Sbjct: 96  LDASRPTLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++     L+L +L+ 
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427

Iteration: 1
 Score =  256 bits (653), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/278 (47%), Positives = 172/278 (61%), Gaps = 10/278 (3%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RP +CYWILHS+ LL E +   +     +FL  CQ P+        Q PHLA T A
Sbjct: 96  LDASRPTLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTTA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ 
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313

>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 520

Iteration: 1
 Score =  175 bits (443), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 160/316 (50%), Gaps = 52/316 (16%)
Query: 8   RGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMME-------LQRKNHVEYLLRGLQQL 60
           R + T  EQ+   + ++ L+ + A        L+ E       L+++ H ++L     QL
Sbjct: 22  RPSATLDEQAETEDLISQLFDLTAD----PNALVSEHGKRYSGLRKQEHTQFLASSFFQL 77
Query: 61  GPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXX--XXXXXXQM 118
              F SLDA+RPW+ +W +HS+ LLG  +D   +DR +  L     P           Q+
Sbjct: 78  PGKFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQI 137
Query: 119 PHLATTYAAVNALI------SLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDV 172
           PHL  TYA+V +L       S GG K L +  +S    F++C K P G F + + GE+DV
Sbjct: 138 PHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRC-KRPDGGFVVCEGGEVDV 196
Query: 173 RACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIA------------------GEP 214
           R  Y  + VA++L+I+  ELL NV  ++ +CQTYEGG A                   EP
Sbjct: 197 RGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEP 256
Query: 215 G-----SEAHGGYTFCGLAAMILINEAD------RLDLDALIGWVVFRQGVE---GGFQG 260
                 +EAHGGYT C L +  L+           +D +A + W V +QG     GGF+G
Sbjct: 257 SCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRG 316
Query: 261 RTNKLVDGCYSFWQGG 276
           RTNKLVDGCYS+W GG
Sbjct: 317 RTNKLVDGCYSWWVGG 332

>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 9/250 (3%)
Query: 39  TLMMELQRKNHVEYLLR-GLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRT 97
           TL++E     H +Y+   G ++    +C  +  R    YW L  M L+G+    + E+  
Sbjct: 17  TLLLE----KHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEIL 72
Query: 98  IEFLSRCQDPNXXXXXXXXQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD 157
           + F+  CQ             PHL  T +AV  L       S+  IN  KV  +++ ++ 
Sbjct: 73  V-FIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLY---DSIHVINVDKVVAYVQSLQK 128
Query: 158 PSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSE 217
             G+F     GEID R  + A++  ++L  LD   ++    ++LSC  ++GG    PGSE
Sbjct: 129 EDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSE 188
Query: 218 AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV 277
           +H G  +C    + + ++  +++ D L  W+  RQ   GG  GR  KL D CYS+W    
Sbjct: 189 SHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLAS 248
Query: 278 FALLRRFHSI 287
             ++ R H I
Sbjct: 249 LKIIGRLHWI 258

>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 9/250 (3%)
Query: 39  TLMMELQRKNHVEYLLR-GLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRT 97
           TL++E     H +Y+   G ++    +C  +  R    YW L  M L+G+    + E+  
Sbjct: 16  TLLLE----KHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEIL 71
Query: 98  IEFLSRCQDPNXXXXXXXXQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD 157
           + F+  CQ             PHL  T +AV  L       S+  IN  KV  +++ ++ 
Sbjct: 72  V-FIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLY---DSIHVINVDKVVAYVQSLQK 127
Query: 158 PSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSE 217
             G+F     GEID R  + A++  ++L  LD   ++    ++LSC  ++GG    PGSE
Sbjct: 128 EDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSE 187
Query: 218 AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV 277
           +H G  +C    + + ++  +++ D L  W+  RQ   GG  GR  KL D CYS+W    
Sbjct: 188 SHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLAS 247
Query: 278 FALLRRFHSI 287
             ++ R H I
Sbjct: 248 LKIIGRLHWI 257

>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 128/275 (46%), Gaps = 36/275 (13%)
Query: 42  MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEF- 100
           ++  R  HV +  R LQ L   + SL+ +R  I ++ L  + +L + +D   +D  IE+ 
Sbjct: 18  LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDML-DSLDVVNKDDIIEWI 76
Query: 101 -------------LSRCQ--------DPNXXXXXXXXQMP----HLATTYAAVNALISLG 135
                        L RC          P           P    H+A TY  ++ LI LG
Sbjct: 77  YSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG 136
Query: 136 GEKSLPSINRSKVYTFLKCMKDPSGAF-RMHDAGEIDVRACYTAISVASILNILDDELLQ 194
            +  L  +++      L+ ++   G+F  + +  E D+R  Y A  +  +LN      ++
Sbjct: 137 DD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMK 194
Query: 195 NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL----DLDALIGWVVF 250
              +YI    +Y+ G+A   G E+HGG TFCG+A++ L+ + + +    +L+ +  W + 
Sbjct: 195 KAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM 254
Query: 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 285
           RQ  + G+ GR NK VD CYSFW G    LL+ F 
Sbjct: 255 RQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287

>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 390

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 126/313 (40%), Gaps = 87/313 (27%)
Query: 41  MMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLE------ 94
           M +L    H ++  R L  L  +  S D+N+  I Y+ LH + L+ +F   + E      
Sbjct: 1   MNQLLINKHEKFFNRCLIGLPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRN 60
Query: 95  ----------DRTIEFLSR--CQDPNXXXXXXXXQMPHLATT-YAAVNALISLGGEKSLP 141
                     ++ I F S    Q  N          P+L++T +A  N LI      ++ 
Sbjct: 61  FIINQFMIENNQIISFRSTHYFQKTNQKY-----DCPNLSSTLFALYNLLILKSPYHTI- 114
Query: 142 SINRSKVYTFL-KC-MKD---------------PSGAFRMHDAGEIDVRACYTAISVASI 184
            INR K+  FL KC +KD                +G ++ +  GE D+R CY A+ +  +
Sbjct: 115 -INRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQY--GEPDLRVCYMALLIRHL 171
Query: 185 LNILD-------------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 231
           +   D             D  L ++  +IL      GG +     E+H G+TFC +A++ 
Sbjct: 172 MKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLK 231
Query: 232 LINEADRLDLDALIGWVVFRQ---------------------------GVE-GGFQGRTN 263
           L+N      L +   W++ RQ                            ++ GGF GR N
Sbjct: 232 LLNYPLE-KLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGREN 290
Query: 264 KLVDGCYSFWQGG 276
           KL D CYS+W  G
Sbjct: 291 KLSDTCYSWWCTG 303
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	362
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	1e-98
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	3e-20
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	2e-98
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	4e-06
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	3e-84
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	4e-26
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	8e-15
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	4e-81
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	2e-23
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	1e-20
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	8e-75
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	3e-13
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437

 Score =  298 bits (764), Expect = 1e-98
 Identities = 140/289 (48%), Positives = 183/289 (63%), Gaps = 4/289 (1%)

Query: 10  TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
           TVT  EQ+ V   +  ++  Y     + +   + LQR+ H  YL RGL+QL  ++  LDA
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPR---LVLQREKHFHYLKRGLRQLTDAYECLDA 98

Query: 70  NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVN 129
           +RPW+CYWILHS+ LL E +   +     +FL  CQ P GG+GGGPGQ PHLA TYAAVN
Sbjct: 99  SRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVN 158

Query: 130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
           AL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ NI+ 
Sbjct: 159 ALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIIT 218

Query: 190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
            +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++     L+L +L+ WV 
Sbjct: 219 PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVT 278

Query: 250 FRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 297
            RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R     G+    +  
Sbjct: 279 SRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 327

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437

 Score = 90.2 bits (223), Expect = 3e-20
 Identities = 46/212 (21%), Positives = 78/212 (36%), Gaps = 28/212 (13%)

Query: 44  LQRKNHVEYLLRGLQQLGPSFCSLDANR--PWICYWILHSMALLGEFVDADLEDRTIEFL 101
           + R+  ++YL   L+Q   SF             Y      +L    +  DL + T E++
Sbjct: 172 INREKLLQYLYS-LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNI-ITPDLFEGTAEWI 229

Query: 102 SRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCM-KDPSG 160
           +RCQ+  GG GG PG   H   T+  + AL+ L       S+N   +  ++        G
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK---RERSLNLKSLLQWVTSRQMRFEG 286

Query: 161 AFRMHDAGEIDVRACYTAISVASIL----------------NILDDELLQNVGNYILSC- 203
            F+      +D    +    +  +L                 +   + LQ    YIL C 
Sbjct: 287 GFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQE---YILMCC 343

Query: 204 QTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 235
           Q   GG+  +PG      +T   L+ + +   
Sbjct: 344 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQH 375

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520

 Score =  300 bits (769), Expect = 2e-98
 Identities = 121/400 (30%), Positives = 178/400 (44%), Gaps = 67/400 (16%)

Query: 3   PDTEPRGTVTQREQSMVLNDVNMLYHIYAT---VPPIAQTLMMELQRKNHVEYLLRGLQQ 59
             +  R + T  EQ+   + ++ L+ + A    +          L+++ H ++L     Q
Sbjct: 17  LPSNSRPSATLDEQAETEDLISQLFDLTADPNALVSEHGKRYSGLRKQEHTQFLASSFFQ 76

Query: 60  LGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPG--Q 117
           L   F SLDA+RPW+ +W +HS+ LLG  +D   +DR +  L     P GG+GGGP   Q
Sbjct: 77  LPGKFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQ 136

Query: 118 MPHLATTYAAVNALISLGGEKSLPS-----INRSKVYTFLKCMKDPSGAFRMHDAGEIDV 172
           +PHL  TYA+V +L   G + S          R  +Y F    K P G F + + GE+DV
Sbjct: 137 IPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDV 196

Query: 173 RACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGE------------------- 213
           R  Y  + VA++L+I+  ELL NV  ++ +CQTYEGG A                     
Sbjct: 197 RGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEP 256

Query: 214 ----PGSEAHGGYTFCGLAAMILINEAD------RLDLDALIGWVVFRQGV---EGGFQG 260
                 +EAHGGYT C L +  L+           +D +A + W V +QG     GGF+G
Sbjct: 257 SCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRG 316

Query: 261 RTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDG 320
           RTNKLVDGCYS+W GG   +                                        
Sbjct: 317 RTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVK-------------------------K 351

Query: 321 SSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQ 360
           S  E+  +  E          P+F+ +ALQ + L+ +Q  
Sbjct: 352 SRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQD 391

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520

 Score = 47.6 bits (112), Expect = 4e-06
 Identities = 33/261 (12%), Positives = 61/261 (23%), Gaps = 78/261 (29%)

Query: 54  LRGLQQLGPSFCSLD--ANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGY 111
               ++    F   +         Y +L    LL       L     +F+S CQ   GG+
Sbjct: 176 FMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLH-NVDKFVSACQTYEGGF 234

Query: 112 GGGPGQM-----------------------PHLATTYAAVNALISLGG---EKSLPSINR 145
                                          H   T  ++N+   L          SI+ 
Sbjct: 235 ACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDA 294

Query: 146 SKVYTFL---KCMKDPSGAFRMHDAG--EIDVRACYTAISVASILNILDDELLQNVG--- 197
           +    +    +      G FR    G     V  CY+   V     + ++ + +      
Sbjct: 295 NAALRWTVLQQGEPIEGGGFR----GRTNKLVDGCYS-WWVGGGAPVAEELVRREKSRKV 349

Query: 198 --------------------------------NYILSCQTYE----GGIAGEPGSEAHGG 221
                                            + L     +    GG+  +PG      
Sbjct: 350 KKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQY 409

Query: 222 YTFCGLAAMILINEADRLDLD 242
           +T   L+ + +          
Sbjct: 410 HTCNNLSGLSIAQHKMSHSPS 430

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score =  258 bits (659), Expect = 3e-84
 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 5/244 (2%)

Query: 43  ELQRKNHVEYLLRGLQQLGPS-FCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFL 101
            L  + H +Y+     +     +C  +  R    YW L  M L+G+      ++  + F+
Sbjct: 17  TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQL-HRMNKEEILVFI 75

Query: 102 SRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGA 161
             CQ   GG     G  PHL  T +AV  L       S+  IN  KV  +++ ++   G+
Sbjct: 76  KSCQHECGGVSASIGHDPHLLYTLSAVQILTLYD---SIHVINVDKVVAYVQSLQKEDGS 132

Query: 162 FRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGG 221
           F     GEID R  + A++  ++L  LD   ++    ++LSC  ++GG    PGSE+H G
Sbjct: 133 FAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAG 192

Query: 222 YTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL 281
             +C    + + ++  +++ D L  W+  RQ   GG  GR  KL D CYS+W      ++
Sbjct: 193 QIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKII 252

Query: 282 RRFH 285
            R H
Sbjct: 253 GRLH 256

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score =  105 bits (263), Expect = 4e-26
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 24  NMLYHIYATVPPIAQTLMME----LQRKNHVEYLLRGLQQLGPSFCSLD--ANRPWICYW 77
               H+  T+  +    + +    +     V Y+   LQ+   SF             + 
Sbjct: 90  GHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQS-LQKEDGSFAGDIWGEIDTRFSFC 148

Query: 78  ILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGE 137
            + ++ALLG+    ++ ++ IEF+  C + +GG+G  PG   H    Y     L      
Sbjct: 149 AVATLALLGKLDAINV-EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITS-- 205

Query: 138 KSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVG 197
             L  +N   +  +L   + PSG          DV   +  ++   I+  L     + + 
Sbjct: 206 -QLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLR 264

Query: 198 NYILSCQTYE-GGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDAL 244
           ++IL+CQ  E GG A  PG      +T  G+A + L+ E     +  +
Sbjct: 265 SFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPV 312

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score = 73.6 bits (180), Expect = 8e-15
 Identities = 28/173 (16%), Positives = 64/173 (36%), Gaps = 8/173 (4%)

Query: 137 EKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNV 196
             +  ++   K   ++         +    +  + +   Y  ++V  ++  L     + +
Sbjct: 12  SDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEI 71

Query: 197 GNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEG 256
             +I SCQ   GG++   G + H  YT   +  + L +    +++D ++ +V   Q  +G
Sbjct: 72  LVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDG 131

Query: 257 GFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQT 309
            F G     +D  +SF      ALL +           ++   A   + +   
Sbjct: 132 SFAGDIWGEIDTRFSFCAVATLALLGK--------LDAINVEKAIEFVLSCMN 176

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score =  251 bits (642), Expect = 4e-81
 Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 36/282 (12%)

Query: 37  AQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDR 96
            +   ++  R  HV +  R LQ L   + SL+ +R  I ++ L  + +L    D   +D 
Sbjct: 13  GEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSL-DVVNKDD 71

Query: 97  TIEFLSRCQ--------------------------DPNGGYGGGPGQMPHLATTYAAVNA 130
            IE++   Q                                   P    H+A TY  ++ 
Sbjct: 72  IIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSC 131

Query: 131 LISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM-HDAGEIDVRACYTAISVASILNILD 189
           LI LG +  L  +++      L+ ++   G+F    +  E D+R  Y A  +  +LN   
Sbjct: 132 LIILGDD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWS 189

Query: 190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL----DLDALI 245
              ++   +YI    +Y+ G+A   G E+HGG TFCG+A++ L+ + + +    +L+ + 
Sbjct: 190 GMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIK 249

Query: 246 GWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 287
            W + RQ  + G+ GR NK VD CYSFW G    LL+ F   
Sbjct: 250 RWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYT 289

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score = 99.1 bits (246), Expect = 2e-23
 Identities = 39/199 (19%), Positives = 70/199 (35%), Gaps = 10/199 (5%)

Query: 54  LRGLQQLGPSFCSLDANRP---WICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGG 110
           LR LQ    SFC++           Y       +L  +   D+  + I ++ R    + G
Sbjct: 151 LRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDM-KKAISYIRRSMSYDNG 209

Query: 111 YGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLK--CMKDPSGAFRMHDAG 168
              G G   H  +T+  + +L  +G    L  +   K    +K  C+      +      
Sbjct: 210 LAQGAGLESHGGSTFCGIASLCLMG---KLEEVFSEKELNRIKRWCIMRQQNGYHGRPNK 266

Query: 169 EIDVRACYTAISVASILNILDDELLQNVGNYILSC-QTYEGGIAGEPGSEAHGGYTFCGL 227
            +D    +   +   +L I      +   NYILS      GG A  P S     + + G+
Sbjct: 267 PVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGI 326

Query: 228 AAMILINEADRLDLDALIG 246
             + L+ E+    +   + 
Sbjct: 327 CGLSLMEESGICKVHPALN 345

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score = 90.6 bits (224), Expect = 1e-20
 Identities = 36/241 (14%), Positives = 83/241 (34%), Gaps = 15/241 (6%)

Query: 61  GPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGP-GQMP 119
             +    D+    + Y  L  + +LG+ +    ++  +  L   Q  +G +   P G   
Sbjct: 111 PGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSEN 170

Query: 120 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAI 179
            +   Y A      L    +   ++  K  ++++               E    + +  I
Sbjct: 171 DMRFVYCASCICYMLN---NWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGI 227

Query: 180 SVASILNILDDELLQNVGNYILS--CQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD 237
           +   ++  L++   +   N I        + G  G P       Y+F   A + L+    
Sbjct: 228 ASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287

Query: 238 RLDLDALIGWVVF-RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPT-PV 295
             + +    +++  +  + GGF    +   D  ++++  G+  L     S++ ES    V
Sbjct: 288 YTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYF--GICGL-----SLMEESGICKV 340

Query: 296 D 296
            
Sbjct: 341 H 341

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score =  235 bits (601), Expect = 8e-75
 Identities = 70/310 (22%), Positives = 114/310 (36%), Gaps = 71/310 (22%)

Query: 41  MMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLG--EFVDADLEDRTI 98
           M +L    H ++  R L  L  +  S D+N+  I Y+ LH + L+   +F + +L     
Sbjct: 1   MNQLLINKHEKFFNRCLIGLPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRN 60

Query: 99  EFLSRCQDPN-----------GGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSK 147
             +++    N                     P+L++T  A+  L+ L        INR K
Sbjct: 61  FIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSP-YHTIINRKK 119

Query: 148 VYTFLKCMKDPSGAFR---------------MHDAGEIDVRACYTAISVASILNILDDEL 192
           +  FL   +   G  +                   GE D+R CY A+ +  ++   D+  
Sbjct: 120 IMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNN 179

Query: 193 -------------LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL 239
                        L ++  +IL      GG +     E+H G+TFC +A++ L+N     
Sbjct: 180 NNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYPLE- 238

Query: 240 DLDALIGWVVFRQ----------------------------GVEGGFQGRTNKLVDGCYS 271
            L +   W++ RQ                               GGF GR NKL D CYS
Sbjct: 239 KLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYS 298

Query: 272 FWQGGVFALL 281
           +W  G    +
Sbjct: 299 WWCTGSLYNI 308

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score = 69.1 bits (168), Expect = 3e-13
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 28/171 (16%)

Query: 95  DRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLG------------------- 135
               +F+    + NGG+        HL  T+ A+ +L  L                    
Sbjct: 194 ISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYPLEKLKSTKEWLIHRQVD 253

Query: 136 -----GEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDD 190
                  K            +        G F   +    D    +        +++   
Sbjct: 254 YPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFI 313

Query: 191 ELL--QNVGNYILSCQTYE--GGIAGEPGSEAHGGYTFCGLAAMILINEAD 237
           +L+      +Y+L+    +  GG   +P S     +++  LA++ L N   
Sbjct: 314 KLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNHEK 364

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 41/218 (18%), Positives = 71/218 (32%), Gaps = 39/218 (17%)

Query: 75  CYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYG-------------------GGP 115
             W L+++ L  E    D   +   ++   Q  NGG+G                   G  
Sbjct: 381 VVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEV 440

Query: 116 GQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRAC 175
              P    T   +    S G + +   I R     +LK  + P G++         V   
Sbjct: 441 TDPPSEDVTAHVLECFGSFGYDDAWKVIRR--AVEYLKREQKPDGSWFGRWG----VNYL 494

Query: 176 YTAISVASILNIL----DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGY--------- 222
           Y   +V S L  +     +  +Q   +++   Q  +GG   +  S     Y         
Sbjct: 495 YGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPS 554

Query: 223 -TFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQ 259
            T   L A+I    A+       + ++V  Q  +GG+ 
Sbjct: 555 QTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWD 592

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 45/369 (12%), Positives = 87/369 (23%), Gaps = 112/369 (30%)

Query: 5   TEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSF 64
           TE R         M +   + LY+        A+     + R      L + L +L P+ 
Sbjct: 100 TEQRQP--SMMTRMYIEQRDRLYN---DNQVFAK---YNVSRLQPYLKLRQALLELRPA- 150

Query: 65  CSLDANRPWICYWILHSMA------LLGEFVDADLEDRTIEF------LSRCQDPNGGYG 112
                    +   ++  +       +  +   +      ++F      L  C  P     
Sbjct: 151 -------KNV---LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE---- 196

Query: 113 GGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDV 172
                +  L      ++   +   + S     R         +       R     +   
Sbjct: 197 ---TVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---------IHSIQAELRRLLKSKPYE 244

Query: 173 RACYTAISVASILNILDD----ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLA 228
                       L +L +    +         LSC+                        
Sbjct: 245 NC----------LLVLLNVQNAKAWNAFN---LSCK------------------------ 267

Query: 229 AMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRR----- 283
             IL+    +   D L         ++      T   V      +       L R     
Sbjct: 268 --ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 284 ---FHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHRER 340
                SII ES      R    + DN +      ++    SS             +  E 
Sbjct: 326 NPRRLSIIAES-----IRDGLATWDNWKHVNCDKLTTIIESSLN---------VLEPAEY 371

Query: 341 EPLFHSIAL 349
             +F  +++
Sbjct: 372 RKMFDRLSV 380

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	362
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	100.0
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	100.0
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	100.0
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	100.0
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	100.0
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	100.0
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	100.0
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	100.0
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	99.97
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	99.96
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.89
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.83
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.74
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.73
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.61
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.6
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.26
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	99.16
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.1
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.01
2hr0_B	915	Complement C3 alpha' chain; complement component C	98.92
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	98.82
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	98.69
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	98.32
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	98.28
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	98.19
2hr0_B	915	Complement C3 alpha' chain; complement component C	98.07
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	98.06
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	97.91
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	97.87
3prx_B	1642	Cobra venom factor; immune system, complement, imm	97.8
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	97.8
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	97.79
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	97.76
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	97.64
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	97.52
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	97.51
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	96.6
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	96.32
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	95.66
3prx_B	1642	Cobra venom factor; immune system, complement, imm	95.24
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	94.97
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	89.64
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	89.59
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	89.28
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	89.14

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=100.00  E-value=1.3e-81  Score=639.08  Aligned_cols=284  Identities=39%  Similarity=0.729  Sum_probs=261.5

Q ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHhhhcC--CCch-hhhhhhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHH
Q 018000            3 PDTEPRGTVTQREQSMVLNDVNMLYHIYATV--PPIA-QTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWIL   79 (362)
Q Consensus         3 ~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~--~~~~-~~~~~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l   79 (362)
                      .++|+++|.||++|.+||+.|.++|+.....  ..+. ....+.|.|++|++||+++|..||.+|+++|++|+|++||+|
T Consensus        17 ~~~d~~~T~Ts~~Q~~te~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~~Hi~yl~~~L~~LP~~y~~~Dasr~wl~Yw~l   96 (520)
T 3q7a_B           17 LPSNSRPSATLDEQAETEDLISQLFDLTADPNALVSEHGKRYSGLRKQEHTQFLASSFFQLPGKFVSLDASRPWLVFWTV   96 (520)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHHHHHHHBCCTTCSSCCTTSBCCCCCHHHHHHHHHHHHSCBCGGGGGGGGGHHHHHHHHH
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHhhhCChhhhhcccchHHHHHHHH
Confidence            5789999999999999999999999863211  0011 112457999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCC--CCCCchhhhHHHHHHHHHcCCC---CCCChhh--HHHHHHHH
Q 018000           80 HSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGP--GQMPHLATTYAAVNALISLGGE---KSLPSIN--RSKVYTFL  152 (362)
Q Consensus        80 ~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~p--g~~shl~~Ty~Av~sL~ilg~~---~~l~~id--r~~~~~fL  152 (362)
                      ++|+|||.+++++.++++|+||++||+++|||+++|  ++.+|+++||+||++|++++..   ++++.||  |+++++||
T Consensus        97 ~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL  176 (520)
T 3q7a_B           97 HSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFF  176 (520)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHH
T ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHH
Confidence            999999988988999999999999999999999999  9999999999999999999975   3577899  99999999


Q ss_pred             HhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCC--------------------
Q 018000          153 KCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAG--------------------  212 (362)
Q Consensus       153 ~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~--------------------  212 (362)
                      .++|++||||.++.+|+.|+|+||||++++.+|+.++.++++++++||++||++|||||.                    
T Consensus       177 ~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp  256 (520)
T 3q7a_B          177 MRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEP  256 (520)
T ss_dssp             HHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CC
T ss_pred             HHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCcccccccccccccccccccc
Confidence            999999999999988999999999999999999999999999999999999999999999                    


Q ss_pred             ---CCCCCCchhHhHHHHHHHHHhccC------CcccHHHHHHHHHhCCC---CCCcccCCCCCCCcccccchHHHHHHH
Q 018000          213 ---EPGSEAHGGYTFCGLAAMILINEA------DRLDLDALIGWVVFRQG---VEGGFQGRTNKLVDGCYSFWQGGVFAL  280 (362)
Q Consensus       213 ---~pg~esh~~~TfcALaaL~llg~~------~~~d~~~l~~WL~~rQ~---~eGGF~GR~nKlvD~CYsfW~~a~l~l  280 (362)
                         .|+.|||++|||||||+|+||++.      +.+|++++++||++||.   .+|||+||+||+||+|||||++++|+|
T Consensus       257 ~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~i  336 (520)
T 3q7a_B          257 SCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPV  336 (520)
T ss_dssp             SEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHH
T ss_pred             ccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHH
Confidence               789999999999999999999996      46899999999999998   359999999999999999999999999


Q ss_pred             Hhhhhh
Q 018000          281 LRRFHS  286 (362)
Q Consensus       281 l~~~~~  286 (362)
                      |+++..
T Consensus       337 L~~~~~  342 (520)
T 3q7a_B          337 AEELVR  342 (520)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            999843

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=1.5e-73  Score=566.47  Aligned_cols=261  Identities=29%  Similarity=0.412  Sum_probs=240.4

Q ss_pred             hhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCC-CCHHhHHHHHHHHhhccCCC----CCCCCCC--
Q 018000           43 ELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEF-VDADLEDRTIEFLSRCQDPN----GGYGGGP--  115 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~-~~~~~~~~~i~~l~~~Q~~d----GGFgg~p--  115 (362)
                      .|+|+||++||+++|+.||.+|+++|++|||++||+|++|+|||.+ +.++.++++++||.+||.++    |||+++|  
T Consensus         3 ~l~~~kHiky~~~~L~~Lp~~~~s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~   82 (390)
T 3dra_B            3 QLLINKHEKFFNRCLIGLPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRSTHYF   82 (390)
T ss_dssp             CCCHHHHHHHHHHHHHCCCGGGGGGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSSGGG
T ss_pred             cccHHHHHHHHHHHHHhCCcchhhcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCCccC
Confidence            5899999999999999999999999999999999999999999985 36778999999999998764    9999985  


Q ss_pred             ---C---CCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCC---C-CCceeecc-----------CCCcccch
Q 018000          116 ---G---QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD---P-SGAFRMHD-----------AGEIDVRA  174 (362)
Q Consensus       116 ---g---~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~---~-dGgF~~~~-----------~ge~D~r~  174 (362)
                         +   +.+|+++||+||++|++||++ +++.|||+++++||.++|+   | ||||.++.           +||.|+|+
T Consensus        83 ~~~g~~~~~~hl~~Ty~Al~~L~ilg~~-~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~  161 (390)
T 3dra_B           83 QKTNQKYDCPNLSSTLFALYNLLILKSP-YHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRV  161 (390)
T ss_dssp             GGSCTTTSCCBHHHHHHHHHHHHHTTCC-GGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHH
T ss_pred             CCCCCccCcccHHHHHHHHHHHHHhCch-hhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHH
Confidence               5   789999999999999999976 5688999999999999999   7 89999654           68999999


Q ss_pred             HHHHHHHHHHhccCC-------------HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccH
Q 018000          175 CYTAISVASILNILD-------------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDL  241 (362)
Q Consensus       175 ~Y~al~~~~LL~~~~-------------~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~  241 (362)
                      ||||+++++||+..+             .++++++++||++||++|||||..|+.|||++|||||||||++|++. ..|+
T Consensus       162 ~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~d~  240 (390)
T 3dra_B          162 CYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LEKL  240 (390)
T ss_dssp             HHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GGGC
T ss_pred             HHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-cccH
Confidence            999999999999887             56789999999999999999999999999999999999999999998 5789


Q ss_pred             HHHHHHHHhCCC----------------------------CCCcccCCCCCCCcccccchHHHHHHHHhhhhhccCCCCC
Q 018000          242 DALIGWVVFRQG----------------------------VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPT  293 (362)
Q Consensus       242 ~~l~~WL~~rQ~----------------------------~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~~~~~~~~~~  293 (362)
                      +++++||++||.                            ++|||+|||||+||+|||||++++|+||++..      . 
T Consensus       241 ~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~------~-  313 (390)
T 3dra_B          241 KSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNF------I-  313 (390)
T ss_dssp             HHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGG------G-
T ss_pred             HHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhcccc------c-
Confidence            999999999998                            47999999999999999999999999998510      0 


Q ss_pred             CcccCCcccccCCCccccCCCCCCCCCCCcccccCCCcccccccccCcccccHHHHHHHHHHccCCc
Q 018000          294 PVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQ  360 (362)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~yil~c~q~~  360 (362)
                                                                      .++|+++|++|||.|||++
T Consensus       314 ------------------------------------------------~l~d~~~l~~yiL~c~Q~~  332 (390)
T 3dra_B          314 ------------------------------------------------KLVDLNKAEDYLLNKTQNQ  332 (390)
T ss_dssp             ------------------------------------------------GGSCHHHHHHHHHHTTBCT
T ss_pred             ------------------------------------------------cccCHHHHHHHHHHhccCC
Confidence                                                            3899999999999999985

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=100.00  E-value=7e-72  Score=563.69  Aligned_cols=311  Identities=48%  Similarity=0.873  Sum_probs=282.9

Q ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHH
Q 018000            2 EPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHS   81 (362)
Q Consensus         2 ~~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~s   81 (362)
                      ..+++++.|.||++|.+||+.|.++|+.+.....+   ..+.|.+++|++||.++++.+|++|..+|++|+|++||+|++
T Consensus        34 ~~~~~~~~t~ts~~Q~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~hi~~l~~~lq~~~gg~~a~D~~r~~l~y~~l~a  110 (437)
T 2h6f_B           34 RLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLV---PRLVLQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHS  110 (437)
T ss_dssp             SCCCTTCCCHHHHHHHHHHHHHHHHHHTTCBTTBC---CCCCCCHHHHHHHHHHHTTEECGGGGGGTTCHHHHHHHHHHH
T ss_pred             ecccCCCCCCCHHHHHHHHHHHHHHHHHHhhcccC---CcccccHHHHHHHHHHcCCCCCCCcccccCCCccHHHHHHHH
Confidence            35789999999999999999999999887643111   125799999999999998889999999999999999999999


Q ss_pred             HHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCc
Q 018000           82 MALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGA  161 (362)
Q Consensus        82 L~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGg  161 (362)
                      |++||.+++++.++++++||++||++||||++.+++.+|+..||+||.+|.++|..++++.++++++++||+++|++|||
T Consensus       111 L~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGs  190 (437)
T 2h6f_B          111 LELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS  190 (437)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSC
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCC
Confidence            99999888888999999999999999999999999999999999999999999964335678899999999999999999


Q ss_pred             eeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccH
Q 018000          162 FRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDL  241 (362)
Q Consensus       162 F~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~  241 (362)
                      |.++++|+.|+|++||||+++.+++..+.+.++++++||++||++|||||..|+.|||+++|||||+||.++|+.+.+++
T Consensus       191 f~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~  270 (437)
T 2h6f_B          191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNL  270 (437)
T ss_dssp             BBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCH
T ss_pred             eeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccH
Confidence            99998999999999999999999998877888999999999999999999999999999999999999999999989999


Q ss_pred             HHHHHHHHhCCC-CCCcccCCCCCCCcccccchHHHHHHHHhhhhhccCC-CCCCcccCCcccccCCCccccCCCCCCCC
Q 018000          242 DALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGE-SPTPVDQRGAECSIDNTQTTTASDVSEGD  319 (362)
Q Consensus       242 ~~l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (362)
                      +++++||.+||. ++|||+|||||+||+|||||++++|+||++++...+. .+                          .
T Consensus       271 ~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~--------------------------~  324 (437)
T 2h6f_B          271 KSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPAL--------------------------S  324 (437)
T ss_dssp             HHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTC--------------------------C
T ss_pred             HHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhccccccc--------------------------c
Confidence            999999999999 8999999999999999999999999999998643221 11                          0


Q ss_pred             CCCcccccCCCcccccccccCcccccHHHHHHHHHHccCCc
Q 018000          320 GSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQ  360 (362)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~yil~c~q~~  360 (362)
                      .                   ..+++|+++|++|||.|||.+
T Consensus       325 ~-------------------~~~l~d~~~l~~yIL~~~Q~~  346 (437)
T 2h6f_B          325 M-------------------SHWMFHQQALQEYILMCCQCP  346 (437)
T ss_dssp             S-------------------SCCSSCHHHHHHHHHHHSBCT
T ss_pred             c-------------------ccccCCHHHHHHHHHHHccCC
Confidence            0                   126999999999999999986

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=100.00  E-value=3.6e-68  Score=527.67  Aligned_cols=237  Identities=31%  Similarity=0.607  Sum_probs=222.1

Q ss_pred             hhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccC---------CCCCCC
Q 018000           42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQD---------PNGGYG  112 (362)
Q Consensus        42 ~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~---------~dGGFg  112 (362)
                      +.|.|++|++||+++++.+|.+|+++|++|+|++||+|++|++||. ++...++++|+||++||+         ++|||+
T Consensus        18 ~~l~~~~H~~y~~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lLg~-l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~   96 (377)
T 1n4q_B           18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFR   96 (377)
T ss_dssp             CCCCHHHHHHHHHHHHHEECGGGGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHTTEECCCTTCTTGGGCEEC
T ss_pred             cccCHHHHHHHHHHHhhcCCccccccccchHHHHHHHHHHHHHhCC-CCccCHHHHHHHHHHhcCCccccccCCCCCccC
Confidence            4699999999999999999999999999999999999999999997 444458999999999999         689999


Q ss_pred             CCCCC-----------------CCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeec-cCCCcccch
Q 018000          113 GGPGQ-----------------MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMH-DAGEIDVRA  174 (362)
Q Consensus       113 g~pg~-----------------~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~-~~ge~D~r~  174 (362)
                      +++++                 .+|+++||+||++|++++..  ++.|||+++++||.++|+|||||.+. .+|+.|+|+
T Consensus        97 g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~--~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~Dirf  174 (377)
T 1n4q_B           97 GSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRF  174 (377)
T ss_dssp             SSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCC--STTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHH
T ss_pred             CCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHH
Confidence            98764                 59999999999999999964  78899999999999999999999986 789999999


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcc----cHHHHHHHHHh
Q 018000          175 CYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL----DLDALIGWVVF  250 (362)
Q Consensus       175 ~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~----d~~~l~~WL~~  250 (362)
                      ||||++++++++..+.++++++++||++||++|||||..|+.|||+++||||+|+|.+++..+..    +++++++||++
T Consensus       175 tY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~  254 (377)
T 1n4q_B          175 VYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM  254 (377)
T ss_dssp             HHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHh
Confidence            99999999999988788899999999999999999999999999999999999999999987654    79999999999


Q ss_pred             CCCCCCcccCCCCCCCcccccchHHHHHHHHhh
Q 018000          251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRR  283 (362)
Q Consensus       251 rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~  283 (362)
                      ||  +|||+|||||+||+|||||++++|+||++
T Consensus       255 rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~  285 (377)
T 1n4q_B          255 RQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKI  285 (377)
T ss_dssp             TB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTC
T ss_pred             cC--CCCcCCCCCcchhHHHHHHHHHHHHHhCC
Confidence            99  89999999999999999999999999974

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=100.00  E-value=1.7e-64  Score=494.10  Aligned_cols=238  Identities=29%  Similarity=0.525  Sum_probs=227.8

Q ss_pred             hhhhHHHHHHHHHHhc-cCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000           42 MELQRKNHVEYLLRGL-QQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH  120 (362)
Q Consensus        42 ~~l~r~~H~~yl~~~l-~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh  120 (362)
                      .+|.|++|++||++++ +.+|..|..+|++|+|++||++++|++||. ++..+++++++||++||++||||+++|++.+|
T Consensus        16 ~~l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~-l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~   94 (331)
T 3dss_B           16 DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPH   94 (331)
T ss_dssp             CSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBC
T ss_pred             hhhhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHhhhcCCCCCcCCCCCCCcc
Confidence            5799999999999986 468999999999999999999999999997 66678999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018000          121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI  200 (362)
Q Consensus       121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI  200 (362)
                      +.+||+||++|++++.   ++.+|++++++||.++|++||||.++++||.|+|+||||++++.+++.++.+.++++++||
T Consensus        95 l~~Ty~Al~~L~~l~~---~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L  171 (331)
T 3dss_B           95 LLYTLSAVQILTLYDS---IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFV  171 (331)
T ss_dssp             HHHHHHHHHHHHHTTC---GGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC---ccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            9999999999999974   7889999999999999999999999999999999999999999999988778899999999


Q ss_pred             HhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHHH
Q 018000          201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFAL  280 (362)
Q Consensus       201 ~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~l  280 (362)
                      ++||++||||+..|+.|||++||||||++|.+++..+.++++++++||.+||.++|||+||+||++|+|||||++++|.+
T Consensus       172 ~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~l  251 (331)
T 3dss_B          172 LSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKI  251 (331)
T ss_dssp             HTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHH
T ss_pred             HHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             Hhh
Q 018000          281 LRR  283 (362)
Q Consensus       281 l~~  283 (362)
                      +++
T Consensus       252 lg~  254 (331)
T 3dss_B          252 IGR  254 (331)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            874

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=100.00  E-value=7.8e-40  Score=319.79  Aligned_cols=236  Identities=18%  Similarity=0.272  Sum_probs=218.0

Q ss_pred             hhhHHHHHHHHHHhccCCCCCceec--cCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000           43 ELQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH  120 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh  120 (362)
                      .++|+++++||.++. +.+|+|...  ..+++..+|.++.+|.+++. ++..+++++++||.++|++||||++.+..++|
T Consensus        65 ~~~r~~~i~~l~s~Q-~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~-~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d  142 (331)
T 3dss_B           65 RMNKEEILVFIKSCQ-HECGGVSASIGHDPHLLYTLSAVQILTLYDS-IHVINVDKVVAYVQSLQKEDGSFAGDIWGEID  142 (331)
T ss_dssp             GSCHHHHHHHHHHTB-CTTSCBBSSTTSCBCHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBC
T ss_pred             hhhHHHHHHHHhhhc-CCCCCcCCCCCCCccHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHhccCCCCCCEecccCCCCc
Confidence            478999999999976 457888763  23578889999999999986 66678999999999999999999998888999


Q ss_pred             hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018000          121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI  200 (362)
Q Consensus       121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI  200 (362)
                      +..||+|+.+|.++|.   ++.++++++++||+++|++||||..+++.++++..||||++++.+++..+..+++++++||
T Consensus       143 ~~~ty~Al~~L~llg~---~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL  219 (331)
T 3dss_B          143 TRFSFCAVATLALLGK---LDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWL  219 (331)
T ss_dssp             HHHHHHHHHHHHHHTC---GGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence            9999999999999996   4667889999999999999999999999999999999999999999887767789999999


Q ss_pred             HhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCC-CcccCCCCCCCcccccchHHHHHH
Q 018000          201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVE-GGFQGRTNKLVDGCYSFWQGGVFA  279 (362)
Q Consensus       201 ~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~e-GGF~GR~nKlvD~CYsfW~~a~l~  279 (362)
                      .++|++||||++.|+.++|..||||++++|.++|+.+.+|++++++||.++|+.+ |||+.+|++.+|..++||+++.|.
T Consensus       220 ~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls  299 (331)
T 3dss_B          220 CERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLS  299 (331)
T ss_dssp             HTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHH
T ss_pred             HHhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988899999999999999976 999999999999999999999999


Q ss_pred             HHhh
Q 018000          280 LLRR  283 (362)
Q Consensus       280 ll~~  283 (362)
                      +++.
T Consensus       300 ~~g~  303 (331)
T 3dss_B          300 LLGE  303 (331)
T ss_dssp             HTTC
T ss_pred             HcCC
Confidence            9974

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=100.00  E-value=1.1e-32  Score=278.09  Aligned_cols=237  Identities=15%  Similarity=0.167  Sum_probs=210.4

Q ss_pred             hhHHHHHHHHHHhccCCCCCceec--cCChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHHHhhccCCCCCCCCCCCCCC
Q 018000           44 LQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEF--VDADLEDRTIEFLSRCQDPNGGYGGGPGQMP  119 (362)
Q Consensus        44 l~r~~H~~yl~~~l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~s  119 (362)
                      ..+++.++||.++.. ..|+|...  +.+.+..+|.+|.+|.++|..  .+...++++++||+++|++||||++.++.++
T Consensus       121 ~~~~r~v~~l~s~Q~-~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~  199 (437)
T 2h6f_B          121 IVATDVCQFLELCQS-PEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEV  199 (437)
T ss_dssp             HHHHHHHHHHHHHBC-TTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCB
T ss_pred             HHHHHHHHHHHHhCC-CCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCc
Confidence            467889999998654 57888763  456888999999999999974  3445689999999999999999999888899


Q ss_pred             chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000          120 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY  199 (362)
Q Consensus       120 hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y  199 (362)
                      |+..||+|+.+|.++|..   +....+++++||+++|++||||...++++++...||||++++.+++..+...++++++|
T Consensus       200 d~~~ty~A~~~L~llg~~---~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~w  276 (437)
T 2h6f_B          200 DVRSAYCAASVASLTNII---TPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQW  276 (437)
T ss_dssp             SHHHHHHHHHHHHHTTCC---CTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHH
T ss_pred             cchhHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHH
Confidence            999999999999999853   44456789999999999999999999999999899999999988887776788999999


Q ss_pred             HHhccC-CCCCcCCCCCCCCchhHhHHHHHHHHHhccC-------------CcccHHHHHHHHHh-CCCCCCcccCCCCC
Q 018000          200 ILSCQT-YEGGIAGEPGSEAHGGYTFCGLAAMILINEA-------------DRLDLDALIGWVVF-RQGVEGGFQGRTNK  264 (362)
Q Consensus       200 I~scQ~-~dGGFg~~pg~esh~~~TfcALaaL~llg~~-------------~~~d~~~l~~WL~~-rQ~~eGGF~GR~nK  264 (362)
                      |++||. .+|||.+.|+..+++-|||+++++|.+|+..             ..+|.+++.+||.. .|..+|||+.++++
T Consensus       277 L~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~  356 (437)
T 2h6f_B          277 VTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGK  356 (437)
T ss_dssp             HHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTS
T ss_pred             HHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCC
Confidence            999999 7899999999999999999999999999753             15789999999987 78899999999999


Q ss_pred             CCcccccchHHHHHHHHhhh
Q 018000          265 LVDGCYSFWQGGVFALLRRF  284 (362)
Q Consensus       265 lvD~CYsfW~~a~l~ll~~~  284 (362)
                      .+|...+|..++.|.+++..
T Consensus       357 ~~D~yHT~y~L~gLsl~~~~  376 (437)
T 2h6f_B          357 SRDFYHTCYCLSGLSIAQHF  376 (437)
T ss_dssp             CCCHHHHHHHHHHHHHHHEE
T ss_pred             CCCHHHHHHHHHHHHHhccc
Confidence            99999999999999999853

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=100.00  E-value=1e-31  Score=266.32  Aligned_cols=235  Identities=14%  Similarity=0.201  Sum_probs=211.7

Q ss_pred             hhHHHHHHHHHHhccC--------CCCCceec-------------------cCChhHHHHHHHHHHHHhCCCCCHHhHHH
Q 018000           44 LQRKNHVEYLLRGLQQ--------LGPSFCSL-------------------DANRPWICYWILHSMALLGEFVDADLEDR   96 (362)
Q Consensus        44 l~r~~H~~yl~~~l~~--------l~~~~~~l-------------------D~sr~w~~Yw~l~sL~lLg~~~~~~~~~~   96 (362)
                      +++++.++|+.++...        ..++|...                   |..++..+|.+|.+|.+|+..++..++++
T Consensus        67 ~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~  146 (377)
T 1n4q_B           67 VNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEA  146 (377)
T ss_dssp             SCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHH
T ss_pred             cCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHH
Confidence            5699999999986541        24667543                   34789999999999999998777778899


Q ss_pred             HHHHHhhccCCCCCCCCC-CCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchH
Q 018000           97 TIEFLSRCQDPNGGYGGG-PGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRAC  175 (362)
Q Consensus        97 ~i~~l~~~Q~~dGGFgg~-pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~  175 (362)
                      +++||+++|.+||+|.+. .....++-.||+|+.+|.++|.   +..++++++++||+++|++||||...+++|+..-.|
T Consensus       147 ~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~---~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T  223 (377)
T 1n4q_B          147 CLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNN---WSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGST  223 (377)
T ss_dssp             HHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTC---GGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHH
T ss_pred             HHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHH
Confidence            999999999999999986 4568899999999999999996   466788999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCHH----HHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhC
Q 018000          176 YTAISVASILNILDDE----LLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFR  251 (362)
Q Consensus       176 Y~al~~~~LL~~~~~~----~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~r  251 (362)
                      ||||+++.+++..+..    .++++++||.+.|  +|||.++|+..++.-|+|+.+++|.+|+..+.+|.+++.+||...
T Consensus       224 ~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~c  301 (377)
T 1n4q_B          224 FCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILST  301 (377)
T ss_dssp             HHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHH
Confidence            9999999999865433    7899999999999  999999999999999999999999999998889999999999999


Q ss_pred             CCC-CCcccCCCCCCCcccccchHHHHHHHHhh
Q 018000          252 QGV-EGGFQGRTNKLVDGCYSFWQGGVFALLRR  283 (362)
Q Consensus       252 Q~~-eGGF~GR~nKlvD~CYsfW~~a~l~ll~~  283 (362)
                      |.+ .|||+.+|++.+|.-.||..++.|.+++.
T Consensus       302 Q~~~~GGf~~~p~~~~D~~HT~~~LagLsl~~~  334 (377)
T 1n4q_B          302 QDRLVGGFAKWPDSHPDALHAYFGICGLSLMEE  334 (377)
T ss_dssp             BCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTC
T ss_pred             cCCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence            997 89999999999999999999999999974

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.97  E-value=4.7e-31  Score=261.87  Aligned_cols=240  Identities=18%  Similarity=0.204  Sum_probs=209.4

Q ss_pred             hhhHHHHHHHHHHhccC---CCCCceec----------cCChhHHHHHHHHHHHHhCCC-CCHHhHHHHHHHHhhccC--
Q 018000           43 ELQRKNHVEYLLRGLQQ---LGPSFCSL----------DANRPWICYWILHSMALLGEF-VDADLEDRTIEFLSRCQD--  106 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~~---l~~~~~~l----------D~sr~w~~Yw~l~sL~lLg~~-~~~~~~~~~i~~l~~~Q~--  106 (362)
                      ..+|++.++|+.+|...   ..++|...          +...++.+|++|.+|.+||.+ ++..+|+++++||.+||.  
T Consensus        52 ~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~  131 (390)
T 3dra_B           52 NQELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKD  131 (390)
T ss_dssp             HHHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCS
T ss_pred             hHHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCC
Confidence            45688999999998642   12566543          567899999999999999986 355679999999999999  


Q ss_pred             -C-CCCCCCCC-----------CCCCchhhhHHHHHHHHHcCCCCC----------CChhhHHHHHHHHHhcCCCCCcee
Q 018000          107 -P-NGGYGGGP-----------GQMPHLATTYAAVNALISLGGEKS----------LPSINRSKVYTFLKCMKDPSGAFR  163 (362)
Q Consensus       107 -~-dGGFgg~p-----------g~~shl~~Ty~Av~sL~ilg~~~~----------l~~idr~~~~~fL~s~Q~~dGgF~  163 (362)
                       + ||||+..+           +.+.++-.||+|++++.+|+....          ...+|.+++++||.++|+.||||.
T Consensus       132 ~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg  211 (390)
T 3dra_B          132 GINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFS  211 (390)
T ss_dssp             STTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBC
T ss_pred             CCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcC
Confidence             7 89999543           568999999999999999986421          015889999999999999999999


Q ss_pred             eccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccC----------------------------CCCCcCCCCC
Q 018000          164 MHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQT----------------------------YEGGIAGEPG  215 (362)
Q Consensus       164 ~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~----------------------------~dGGFg~~pg  215 (362)
                      ..++.|+....||||+++++||+.+ ..+++++++||.++|.                            .+|||.++|+
T Consensus       212 ~~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~n  290 (390)
T 3dra_B          212 STIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGREN  290 (390)
T ss_dssp             SSTTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTT
T ss_pred             CCCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCC
Confidence            9999999999999999999999876 3678999999999998                            4799999999


Q ss_pred             CCCchhHhHHHHHHHHHhcc--CCcccHHHHHHHHHhC-CCC-CCcccCCCCCCCcccccchHHHHHHHHhh
Q 018000          216 SEAHGGYTFCGLAAMILINE--ADRLDLDALIGWVVFR-QGV-EGGFQGRTNKLVDGCYSFWQGGVFALLRR  283 (362)
Q Consensus       216 ~esh~~~TfcALaaL~llg~--~~~~d~~~l~~WL~~r-Q~~-eGGF~GR~nKlvD~CYsfW~~a~l~ll~~  283 (362)
                      ..+|.-|+||++++|.+|+.  .+.+|.+++.+||..+ |.. .|||+.+|.+.+|...||..++.|++++.
T Consensus       291 Kl~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~~  362 (390)
T 3dra_B          291 KLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNH  362 (390)
T ss_dssp             CCBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             CccchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCC
Confidence            99999999999999999995  5678999999999997 454 89999999999999999999999999984

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=99.96  E-value=2.7e-29  Score=255.44  Aligned_cols=239  Identities=17%  Similarity=0.154  Sum_probs=211.2

Q ss_pred             hhhHHHHHHHHHHhccCCCCCcee----ccCChhHHHHHHHHHHHHhCCC-----CCHHh--HHHHHHHHhhccCCCCCC
Q 018000           43 ELQRKNHVEYLLRGLQQLGPSFCS----LDANRPWICYWILHSMALLGEF-----VDADL--EDRTIEFLSRCQDPNGGY  111 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~~l~~~~~~----lD~sr~w~~Yw~l~sL~lLg~~-----~~~~~--~~~~i~~l~~~Q~~dGGF  111 (362)
                      ...+++.++||.++.. ..|+|..    .+.+.+..+|.+|.+|.+|+..     ++..+  ++++++||.++|.+||+|
T Consensus       108 ~~~~~~~I~~Ils~Q~-~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF  186 (520)
T 3q7a_B          108 QGTKDRVVSTLLHFLS-PKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGF  186 (520)
T ss_dssp             HHHHHHHHHHHHTTBC-TTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCB
T ss_pred             hHHHHHHHHHHHHHcC-CCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCE
Confidence            3578899999998754 5778875    3567899999999999999974     33455  889999999999999999


Q ss_pred             CCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceee-----------------------ccCC
Q 018000          112 GGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM-----------------------HDAG  168 (362)
Q Consensus       112 gg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~-----------------------~~~g  168 (362)
                      .+..+...++-.||+|+.+|.++|.   +..++.+++++||+++|+.||||..                       .|++
T Consensus       187 ~g~~wGe~Dir~TY~Al~~L~lLg~---~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~  263 (520)
T 3q7a_B          187 VVCEGGEVDVRGTYCLLVVATLLDI---ITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMA  263 (520)
T ss_dssp             BSSTTCCBCHHHHHHHHHHHHHHTC---CCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECS
T ss_pred             ecCCCCCchHHHHHHHHHHHHHcCC---CChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCC
Confidence            9877778999999999999999985   4677889999999999999999998                       6789


Q ss_pred             CcccchHHHHHHHHHHhccCC------HHHHHHHHHHHHhccC---CCCCcCCCCCCCCchhHhHHHHHHHHHhccC---
Q 018000          169 EIDVRACYTAISVASILNILD------DELLQNVGNYILSCQT---YEGGIAGEPGSEAHGGYTFCGLAAMILINEA---  236 (362)
Q Consensus       169 e~D~r~~Y~al~~~~LL~~~~------~~~~~~~~~yI~scQ~---~dGGFg~~pg~esh~~~TfcALaaL~llg~~---  236 (362)
                      |+..-.||||++++.||+.++      ..++++++.||...|.   .+|||.++|+..+|+-|+||..++|.||+..   
T Consensus       264 EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~  343 (520)
T 3q7a_B          264 EAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRR  343 (520)
T ss_dssp             CCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhc
Confidence            999999999999999999763      4678999999999997   3599999999999999999999999999863   


Q ss_pred             -----------------------------CcccHHHHHHHHH-hCCCCC---CcccCCCCCCCcccccchHHHHHHHHhh
Q 018000          237 -----------------------------DRLDLDALIGWVV-FRQGVE---GGFQGRTNKLVDGCYSFWQGGVFALLRR  283 (362)
Q Consensus       237 -----------------------------~~~d~~~l~~WL~-~rQ~~e---GGF~GR~nKlvD~CYsfW~~a~l~ll~~  283 (362)
                                                   ..+|.+++.+||+ ..|...   |||+.+|.|.+|...+|..++.|++++.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh  423 (520)
T 3q7a_B          344 EKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQH  423 (520)
T ss_dssp             HHHHHC---------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHS
T ss_pred             ccccccccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCC
Confidence                                         2478999999998 588876   9999999999999999999999999986


Q ss_pred             hh
Q 018000          284 FH  285 (362)
Q Consensus       284 ~~  285 (362)
                      ..
T Consensus       424 ~~  425 (520)
T 3q7a_B          424 KM  425 (520)
T ss_dssp             CE
T ss_pred             CC
Confidence            54

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.89  E-value=7e-22  Score=207.75  Aligned_cols=223  Identities=17%  Similarity=0.154  Sum_probs=174.0

Q ss_pred             hHHHHHHHHHHhccCCCCC------------ceecc----CChhHHHHHHHHHHHHhCCCC---CHHhHHHHHHHHhhcc
Q 018000           45 QRKNHVEYLLRGLQQLGPS------------FCSLD----ANRPWICYWILHSMALLGEFV---DADLEDRTIEFLSRCQ  105 (362)
Q Consensus        45 ~r~~H~~yl~~~l~~l~~~------------~~~lD----~sr~w~~Yw~l~sL~lLg~~~---~~~~~~~~i~~l~~~Q  105 (362)
                      ..+|.++||.+.....++.            +.-.+    ....|.+.+++.+|..++.+.   .++..+++++||+++|
T Consensus       332 ~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q  411 (631)
T 2sqc_A          332 RLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQ  411 (631)
T ss_dssp             HHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhc
Confidence            3567889999876543332            21111    145899999999999999742   2346789999999999


Q ss_pred             CCCCCCCCCCC-------------------CCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc
Q 018000          106 DPNGGYGGGPG-------------------QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD  166 (362)
Q Consensus       106 ~~dGGFgg~pg-------------------~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~  166 (362)
                      ++||||+..+.                   ..+++..|..++.+|..++.+  .....++++++||.++|++||||.+..
T Consensus       412 ~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~--~~~~~i~rai~~L~~~Q~~DGsw~g~w  489 (631)
T 2sqc_A          412 SSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYD--DAWKVIRRAVEYLKREQKPDGSWFGRW  489 (631)
T ss_dssp             CTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCC--TTSHHHHHHHHHHHHHCCTTSCCCCSS
T ss_pred             CCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            99999975321                   127788999999999999853  223456899999999999999996543


Q ss_pred             CCCcccchHHHHHHHHHHhccCC----HHHHHHHHHHHHhccCCCCCcCCCC----------CCCCchhHhHHHHHHHHH
Q 018000          167 AGEIDVRACYTAISVASILNILD----DELLQNVGNYILSCQTYEGGIAGEP----------GSEAHGGYTFCGLAAMIL  232 (362)
Q Consensus       167 ~ge~D~r~~Y~al~~~~LL~~~~----~~~~~~~~~yI~scQ~~dGGFg~~p----------g~esh~~~TfcALaaL~l  232 (362)
                          +++.+|+.+.++..|....    ...++++++||++||+.||||+..+          +.++|...|+|||.+|..
T Consensus       490 ----g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~  565 (631)
T 2sqc_A          490 ----GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIA  565 (631)
T ss_dssp             ----BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHH
T ss_pred             ----CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence                4677898877766554332    4678999999999999999998653          467899999999999999


Q ss_pred             hccCCcccHHHHHHHHHhCCCCCCcccCCCCC---CCcccccch
Q 018000          233 INEADRLDLDALIGWVVFRQGVEGGFQGRTNK---LVDGCYSFW  273 (362)
Q Consensus       233 lg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~nK---lvD~CYsfW  273 (362)
                      ++..+...++++++||.++|.++|||......   .+..||--|
T Consensus       566 ag~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y  609 (631)
T 2sqc_A          566 GGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGY  609 (631)
T ss_dssp             TTCSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEE
T ss_pred             cCCCChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceeec
Confidence            99876667899999999999999999887543   568898753

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.83  E-value=2.6e-19  Score=191.01  Aligned_cols=224  Identities=13%  Similarity=0.123  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHhccCC-------------CCCceecc----CChhHHHHHHHHHHHHhCC-------CCCHHhHHHHHHHH
Q 018000           46 RKNHVEYLLRGLQQL-------------GPSFCSLD----ANRPWICYWILHSMALLGE-------FVDADLEDRTIEFL  101 (362)
Q Consensus        46 r~~H~~yl~~~l~~l-------------~~~~~~lD----~sr~w~~Yw~l~sL~lLg~-------~~~~~~~~~~i~~l  101 (362)
                      .++-++||.++...-             +|+|.-.+    ....+.+-+++.+|..++.       .++++..+++++||
T Consensus       411 l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wL  490 (732)
T 1w6k_A          411 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL  490 (732)
T ss_dssp             HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence            457788998876422             15554322    1356788889999888742       35667789999999


Q ss_pred             hhccCCCCCCCCCCC---------------------CCCchhhhHHHHHHHHHcCCC-CCCC----hhhHHHHHHHHHhc
Q 018000          102 SRCQDPNGGYGGGPG---------------------QMPHLATTYAAVNALISLGGE-KSLP----SINRSKVYTFLKCM  155 (362)
Q Consensus       102 ~~~Q~~dGGFgg~pg---------------------~~shl~~Ty~Av~sL~ilg~~-~~l~----~idr~~~~~fL~s~  155 (362)
                      +++|++||||+....                     ..+++..|.+++.+|..++.. ....    ....+++++||.+.
T Consensus       491 ls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~  570 (732)
T 1w6k_A          491 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ  570 (732)
T ss_dssp             HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhh
Confidence            999999999963211                     235778899999999988631 0111    12357899999999


Q ss_pred             CCCCCceeeccCCCcccchHHHHHHHHHHhccCC-H----HHHHHHHHHHHhccCCCCCcCCC----------CCCCCch
Q 018000          156 KDPSGAFRMHDAGEIDVRACYTAISVASILNILD-D----ELLQNVGNYILSCQTYEGGIAGE----------PGSEAHG  220 (362)
Q Consensus       156 Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~-~----~~~~~~~~yI~scQ~~dGGFg~~----------pg~esh~  220 (362)
                      |++||||.+.. +..++.++++++.++.+++... .    ..++++++||+++|+.||||+..          ++.++|.
T Consensus       571 Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v  649 (732)
T 1w6k_A          571 QRADGSWEGSW-GVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI  649 (732)
T ss_dssp             SCTTSCCCCSS-BSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred             cCCCCCccCcC-CCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCH
Confidence            99999998755 3344445555555566666532 1    57899999999999999999974          3567899


Q ss_pred             hHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCCC--CCCcccc
Q 018000          221 GYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTN--KLVDGCY  270 (362)
Q Consensus       221 ~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~n--KlvD~CY  270 (362)
                      ..|.+||.+|..++..+...++++++||.++|..+|||.-++.  ..+..||
T Consensus       650 ~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~  701 (732)
T 1w6k_A          650 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCA  701 (732)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEE
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCcccccccchhh
Confidence            9999999999988887666789999999999999999996643  3466787

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.74  E-value=3.7e-17  Score=174.40  Aligned_cols=236  Identities=17%  Similarity=0.193  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHhccCCCCCceecc--CChhHHHHHHHHHHHHhCCCCC---HHhHHHHHHHHhhccCCC------------
Q 018000           46 RKNHVEYLLRGLQQLGPSFCSLD--ANRPWICYWILHSMALLGEFVD---ADLEDRTIEFLSRCQDPN------------  108 (362)
Q Consensus        46 r~~H~~yl~~~l~~l~~~~~~lD--~sr~w~~Yw~l~sL~lLg~~~~---~~~~~~~i~~l~~~Q~~d------------  108 (362)
                      ..+|++.|.+.+..-+.+.....  .+..|-+-+++.+|.-.|..-+   ....+++++||+++|..+            
T Consensus       358 ~~~~l~~l~~~l~~~~dG~~~q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~  437 (732)
T 1w6k_A          358 FQEHVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQM  437 (732)
T ss_dssp             HHHHHHTSGGGEEEETTEEEECSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCC
T ss_pred             HHHHHHHHHHhheeCCCCceeCCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCC
Confidence            44577777665443343333332  3788999999999988875322   235689999999999876            


Q ss_pred             --CCCCCCCC--CCCchhhhHHHHHHHHHcCCCC-----CCChhhHHHHHHHHHhcCCCCCceeecc-------------
Q 018000          109 --GGYGGGPG--QMPHLATTYAAVNALISLGGEK-----SLPSINRSKVYTFLKCMKDPSGAFRMHD-------------  166 (362)
Q Consensus       109 --GGFgg~pg--~~shl~~Ty~Av~sL~ilg~~~-----~l~~idr~~~~~fL~s~Q~~dGgF~~~~-------------  166 (362)
                        |||+....  ..+++..|..++.+|..+....     ....-..+++++||.++|++||||....             
T Consensus       438 ~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~  517 (732)
T 1w6k_A          438 RKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNP  517 (732)
T ss_dssp             CTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCC
T ss_pred             CCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcc
Confidence              88876543  4689999999999998874210     1222234789999999999999995321             


Q ss_pred             ---CCCcccc--hHHH---HHHHHHHhccC--------CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHH
Q 018000          167 ---AGEIDVR--ACYT---AISVASILNIL--------DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAM  230 (362)
Q Consensus       167 ---~ge~D~r--~~Y~---al~~~~LL~~~--------~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL  230 (362)
                         .+...+.  .+++   ++.++.+++..        ....++++++||+++|+.||||.+..+. .+.+.|++++.+|
T Consensus       518 ~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~-~~~Y~T~~al~AL  596 (732)
T 1w6k_A          518 SEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGV-CFTYGTWFGLEAF  596 (732)
T ss_dssp             CSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBS-SHHHHHHHHHHHH
T ss_pred             hhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCC-ccchHHHHHHHHH
Confidence               1122222  2233   33334434321        1356889999999999999999876543 5666799999999


Q ss_pred             HHhccCCc-----ccHHHHHHHHHhCCCCCCcccCCC----------CCCCcccccchHHHHHHHHh
Q 018000          231 ILINEADR-----LDLDALIGWVVFRQGVEGGFQGRT----------NKLVDGCYSFWQGGVFALLR  282 (362)
Q Consensus       231 ~llg~~~~-----~d~~~l~~WL~~rQ~~eGGF~GR~----------nKlvD~CYsfW~~a~l~ll~  282 (362)
                      .++|....     ..++++++||.++|..+|||..+.          .+..|.+.+.|++-+|..++
T Consensus       597 ~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag  663 (732)
T 1w6k_A          597 ACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVR  663 (732)
T ss_dssp             HHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTT
T ss_pred             HHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcC
Confidence            99997542     358999999999999999998643          44678888888876665443

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.73  E-value=1.3e-16  Score=167.79  Aligned_cols=237  Identities=15%  Similarity=0.073  Sum_probs=164.8

Q ss_pred             HHHHHHHHHHhccCCCC-Ccee-ccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCC-------------CC
Q 018000           46 RKNHVEYLLRGLQQLGP-SFCS-LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPN-------------GG  110 (362)
Q Consensus        46 r~~H~~yl~~~l~~l~~-~~~~-lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~d-------------GG  110 (362)
                      .++|++.+.+.+-.-+. ++.. --.|..|-+.|++.+|..+|.+.+...++++++||.++|..+             ||
T Consensus       283 ~~~~~~~~~~~~~~~~dGg~~~~~~~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~Gg  362 (631)
T 2sqc_A          283 FIKGWEGLELYGVELDYGGWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGG  362 (631)
T ss_dssp             HHHHHHGGGGGEEECTTSCEEECSSCCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCC
T ss_pred             HHHHHHHHHhceEEcCCCceeeCCCCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCC
Confidence            56677777766533232 4432 234789999999999999998655667889999999998643             44


Q ss_pred             CCC--CCCCCCchhhhHHHHHHHHHcCCCCC-CChhhHHHHHHHHHhcCCCCCceeeccCC----------------C--
Q 018000          111 YGG--GPGQMPHLATTYAAVNALISLGGEKS-LPSINRSKVYTFLKCMKDPSGAFRMHDAG----------------E--  169 (362)
Q Consensus       111 Fgg--~pg~~shl~~Ty~Av~sL~ilg~~~~-l~~idr~~~~~fL~s~Q~~dGgF~~~~~g----------------e--  169 (362)
                      |+.  .+...|++..|..++.+|..++.... ...-..+++++||.++|++||||.....+                .  
T Consensus       363 W~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d  442 (631)
T 2sqc_A          363 FAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTD  442 (631)
T ss_dssp             BCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSC
T ss_pred             CccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccC
Confidence            432  23346889999999999999885210 01112468999999999999999642110                1  


Q ss_pred             -cccchHHHHHHHHHHhccC-CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCC-cccHHHHHH
Q 018000          170 -IDVRACYTAISVASILNIL-DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD-RLDLDALIG  246 (362)
Q Consensus       170 -~D~r~~Y~al~~~~LL~~~-~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~-~~d~~~l~~  246 (362)
                       .++--|..++.++..++.. ....++++++||+++|+.||||.+..+ ..+...|..++.+|..++... ...++++++
T Consensus       443 ~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg-~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~  521 (631)
T 2sqc_A          443 PPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKALD  521 (631)
T ss_dssp             CCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence             2222233334444434431 236789999999999999999965544 345666777888888887642 346899999


Q ss_pred             HHHhCCCCCCcccCCC----------CCCCcccccchHHHHHHHHhh
Q 018000          247 WVVFRQGVEGGFQGRT----------NKLVDGCYSFWQGGVFALLRR  283 (362)
Q Consensus       247 WL~~rQ~~eGGF~GR~----------nKlvD~CYsfW~~a~l~ll~~  283 (362)
                      ||.++|.++|||...+          ....|...++|++.+|..++.
T Consensus       522 ~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~  568 (631)
T 2sqc_A          522 WVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGR  568 (631)
T ss_dssp             HHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999995432          235677888898888776554

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.61  E-value=1.4e-14  Score=139.39  Aligned_cols=203  Identities=12%  Similarity=0.120  Sum_probs=135.6

Q ss_pred             ccCCCCCceeccCChhHHHHHHHHHHHHhCCC--CCHHh-------HHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHH
Q 018000           57 LQQLGPSFCSLDANRPWICYWILHSMALLGEF--VDADL-------EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAA  127 (362)
Q Consensus        57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~--~~~~~-------~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~A  127 (362)
                      |...|.+-...-.++.+-..+++.-|+..+.-  ++++.       .++.+++++++|++||||+..++..++...|.++
T Consensus        10 L~~~P~GC~EQ~~~~~~P~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v   89 (310)
T 2wy7_A           10 LIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYV   89 (310)
T ss_dssp             GCCCCCSSTTHHHHHHHHHHHHHHHHHHHTCHHHHCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHH
T ss_pred             HHhCCCCcHHHHHHHHhHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHH
Confidence            33455443333345555555566555665541  12223       3445566999999999999988889999999999


Q ss_pred             HHHHHHcCCCCCCChhhHHHHHHHHHh-cCCCCCceeeccC-------CCc----ccchHHHHHHHHHHhcc-------C
Q 018000          128 VNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRMHDA-------GEI----DVRACYTAISVASILNI-------L  188 (362)
Q Consensus       128 v~sL~ilg~~~~l~~idr~~~~~fL~s-~Q~~dGgF~~~~~-------ge~----D~r~~Y~al~~~~LL~~-------~  188 (362)
                      +.+|..+......+.--.++.++||.+ .|++||+|.....       |+.    +.+.+++|.++.+|+..       .
T Consensus        90 ~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~  169 (310)
T 2wy7_A           90 VKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQV  169 (310)
T ss_dssp             HHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCC
Confidence            999999875211222223589999996 9999999986532       111    33456777777666543       1


Q ss_pred             --CHHHHHHHHHHHHhccCC---------------------------------CCCcCCCCCCCC-chhHhHHHHHHHHH
Q 018000          189 --DDELLQNVGNYILSCQTY---------------------------------EGGIAGEPGSEA-HGGYTFCGLAAMIL  232 (362)
Q Consensus       189 --~~~~~~~~~~yI~scQ~~---------------------------------dGGFg~~pg~es-h~~~TfcALaaL~l  232 (362)
                        ....++++++||.+||+.                                 +|++-..|+..+ ....|.+||.+|..
T Consensus       170 ~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~  249 (310)
T 2wy7_A          170 NSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQ  249 (310)
T ss_dssp             TTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHh
Confidence              135678999999999764                                 334433333211 44577788888877


Q ss_pred             hccCCcccHHHHHHHHHhCCCCCCcccCC
Q 018000          233 INEADRLDLDALIGWVVFRQGVEGGFQGR  261 (362)
Q Consensus       233 lg~~~~~d~~~l~~WL~~rQ~~eGGF~GR  261 (362)
                      .+..  .++.++++||.++|..+|||...
T Consensus       250 ~~~~--~~~~~~v~wL~~qq~~~Ggw~sT  276 (310)
T 2wy7_A          250 LKDF--DFVPPVVRWLNEQRYYGGGYGST  276 (310)
T ss_dssp             HTCT--TTHHHHHHHHHHTTCCCCSTTCH
T ss_pred             cCCh--hhHHHHHHHHHHccCCCCCeecc
Confidence            7653  56899999999999999999763

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.60  E-value=4.7e-14  Score=133.35  Aligned_cols=166  Identities=14%  Similarity=0.193  Sum_probs=119.0

Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh-cCCCCCceeeccC-----
Q 018000           94 EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRMHDA-----  167 (362)
Q Consensus        94 ~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s-~Q~~dGgF~~~~~-----  167 (362)
                      +++.+++++++|++||||+..++..++...|.+++.+|..+......+.--.++.++||.+ .|++||+|.....     
T Consensus        40 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~  119 (277)
T 1qqf_A           40 IKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQE  119 (277)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred             HHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchh
Confidence            3445556999999999999988889999999999999999875212222223588999996 9999999986532     


Q ss_pred             --CCc----ccchHHHHHHHHHHhcc-------C--CHHHHHHHHHHHHhccCC--------------------------
Q 018000          168 --GEI----DVRACYTAISVASILNI-------L--DDELLQNVGNYILSCQTY--------------------------  206 (362)
Q Consensus       168 --ge~----D~r~~Y~al~~~~LL~~-------~--~~~~~~~~~~yI~scQ~~--------------------------  206 (362)
                        |+.    |.+.++++.++.+|+..       .  ....++++++||.++++.                          
T Consensus       120 ~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~  199 (277)
T 1qqf_A          120 MIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLT  199 (277)
T ss_dssp             GGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHH
T ss_pred             hcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence              111    33456777777666543       1  135678999999999764                          


Q ss_pred             -------CCCcCCCCCCC-CchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCC
Q 018000          207 -------EGGIAGEPGSE-AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR  261 (362)
Q Consensus       207 -------dGGFg~~pg~e-sh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR  261 (362)
                             +|++-..|+.. .....|.+||.+|...+.  ..++.++++||.++|..+|||..-
T Consensus       200 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~sT  260 (277)
T 1qqf_A          200 KFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGST  260 (277)
T ss_dssp             HHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTCH
T ss_pred             HHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeecc
Confidence                   34443334321 134567777777777664  356899999999999999999863

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=99.26  E-value=8.2e-11  Score=115.77  Aligned_cols=201  Identities=12%  Similarity=0.078  Sum_probs=126.6

Q ss_pred             ccCCCCCceeccCChhHHHHHHHHHHHHhCC--CCC-------HHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHH
Q 018000           57 LQQLGPSFCSLDANRPWICYWILHSMALLGE--FVD-------ADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAA  127 (362)
Q Consensus        57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~--~~~-------~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~A  127 (362)
                      |...|.+....-.++..-..+++..|.-.+.  .++       ....++.+++|+++|++||||+..++..++...|.++
T Consensus        47 L~~~P~Gc~EQ~~s~~~P~~~v~~~l~~~~~w~~~~~~~~~~~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v  126 (367)
T 1hzf_A           47 LLRLPRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFV  126 (367)
T ss_dssp             TCCCCCSSHHHHHHHHHHHHHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHH
Confidence            4456766554444444434455555554332  022       1245678899999999999999877777888889999


Q ss_pred             HHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCC------------CcccchHHHHHHHHHHhccC-------
Q 018000          128 VNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAG------------EIDVRACYTAISVASILNIL-------  188 (362)
Q Consensus       128 v~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~g------------e~D~r~~Y~al~~~~LL~~~-------  188 (362)
                      +.+|..++.....+.--.+++++||.+.|++||+|......            +.++  .-+|+++..|+...       
T Consensus       127 ~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~~--~lTA~vl~aL~~~g~~~~~~~  204 (367)
T 1hzf_A          127 LKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETV--ALTAFVTIALHHGLAVFQDEG  204 (367)
T ss_dssp             HHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHHH--HHHHHHHHHHHHHHTTCCTTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCcccc--cchHHHHHHHHhhhccccccc
Confidence            99998887431122222467899999999999999865211            1222  22344444443211       


Q ss_pred             -------CHHHHHHHHHHHHhc--cC------------------------------------CCCC---cCCCC------
Q 018000          189 -------DDELLQNVGNYILSC--QT------------------------------------YEGG---IAGEP------  214 (362)
Q Consensus       189 -------~~~~~~~~~~yI~sc--Q~------------------------------------~dGG---Fg~~p------  214 (362)
                             ....++++++||.+.  ++                                    .+|+   |+...      
T Consensus       205 ~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~  284 (367)
T 1hzf_A          205 AEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNA  284 (367)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCEECSSCEECC---------
T ss_pred             cchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCccccc
Confidence                   123567888998766  21                                    1444   44311      


Q ss_pred             ---------------CCCC-chhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccC
Q 018000          215 ---------------GSEA-HGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG  260 (362)
Q Consensus       215 ---------------g~es-h~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~G  260 (362)
                                     ...+ ....|.+||.+|...+.. ...+.+.++||.+.|+.+|||..
T Consensus       285 ~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~~-~~~~~~iv~WL~~qrn~~Ggw~s  345 (367)
T 1hzf_A          285 VSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK-AEMADQASAWLTRQGSFQGGFRS  345 (367)
T ss_dssp             ---------------CCCHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTSTTCSCS
T ss_pred             ccccccccccccccCCCccchhHHHHHHHHHHHhccCc-hhhhHHHHHHHHhCcCCCCCccc
Confidence                           0111 456788888888765432 34578999999999999999974

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=99.16  E-value=4.6e-10  Score=126.70  Aligned_cols=201  Identities=14%  Similarity=0.139  Sum_probs=134.1

Q ss_pred             ccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHH-------HHHhhccCCCCCCCCCCCCCCchhhhHHHHH
Q 018000           57 LQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTI-------EFLSRCQDPNGGYGGGPGQMPHLATTYAAVN  129 (362)
Q Consensus        57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i-------~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~  129 (362)
                      |.+.|.+-...-.++..-..+++.-|.-.+. ++++.+++++       ++++++|++||||+..++..++...|.+++.
T Consensus       831 L~~~PyGC~EQ~~s~~~p~~~~~~yl~~~~~-~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~  909 (1325)
T 2pn5_A          831 LLGVPTGCGEQNMVKFVPNILVLDYLHAIGS-KEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGT  909 (1325)
T ss_dssp             CCSSCCCSTTGGGGGTHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHH
T ss_pred             HhcCCCCchhHHHHHHhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHH
Confidence            3344544333345565555555655555554 5555455554       4569999999999999999999999999999


Q ss_pred             HHHHcCCCC-CCChhhHHHHHHHHHhcCCCCCceeeccC-------CCcccchHHHHHHHHHHhccC-----CHHHHHHH
Q 018000          130 ALISLGGEK-SLPSINRSKVYTFLKCMKDPSGAFRMHDA-------GEIDVRACYTAISVASILNIL-----DDELLQNV  196 (362)
Q Consensus       130 sL~ilg~~~-~l~~idr~~~~~fL~s~Q~~dGgF~~~~~-------ge~D~r~~Y~al~~~~LL~~~-----~~~~~~~~  196 (362)
                      +|..+.... ..+.--.+++++||.+.|++||+|.....       |+.+.+.+|++.+.++|+...     ....++++
T Consensus       910 ~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a  989 (1325)
T 2pn5_A          910 SMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKG  989 (1325)
T ss_dssp             HHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHH
T ss_pred             HHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHH
Confidence            999985421 12222246899999999999999976421       344555677776666665431     12356788


Q ss_pred             HHHHHhccCC-CCCcCCC-----------C------------------------CCCCchhHhHHHHHHHHHhccCCccc
Q 018000          197 GNYILSCQTY-EGGIAGE-----------P------------------------GSEAHGGYTFCGLAAMILINEADRLD  240 (362)
Q Consensus       197 ~~yI~scQ~~-dGGFg~~-----------p------------------------g~esh~~~TfcALaaL~llg~~~~~d  240 (362)
                      ++||.++|.. +++++..           +                        ...+....|.+||.+|...+.  ...
T Consensus       990 ~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w~~~s~ve~tA~aLlall~~~~--~~~ 1067 (1325)
T 2pn5_A          990 MTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAEK--YTD 1067 (1325)
T ss_dssp             HHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEECCSSSHHHHHHHHHHHHHHTTC--HHH
T ss_pred             HHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccCCCCCchHHHHHHHHHHhhhcc--chh
Confidence            9999988765 6665321           0                        002344566777777666553  335


Q ss_pred             HHHHHHHHHhCCCCCCcccC
Q 018000          241 LDALIGWVVFRQGVEGGFQG  260 (362)
Q Consensus       241 ~~~l~~WL~~rQ~~eGGF~G  260 (362)
                      ..++++||.++|..+|||.-
T Consensus      1068 ~~~~v~wL~~q~~~~g~w~s 1087 (1325)
T 2pn5_A         1068 GIPVMNWLVNQRYVTGSFPS 1087 (1325)
T ss_dssp             HHHHHHHHHTTCCTTSSCSS
T ss_pred             hHHHHHHHHhccCCCCCccc
Confidence            68899999998888899873

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.10  E-value=1.2e-09  Score=102.90  Aligned_cols=178  Identities=15%  Similarity=0.210  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHh------ccCCCCCceecc--CChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhh-ccCCCCCCCCC
Q 018000           46 RKNHVEYLLRG------LQQLGPSFCSLD--ANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSR-CQDPNGGYGGG  114 (362)
Q Consensus        46 r~~H~~yl~~~------l~~l~~~~~~lD--~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~-~Q~~dGGFgg~  114 (362)
                      +++-++|+.+.      +++.+|+|..-+  .+.+|++-+++.+|..+..  .+++..++++++||.+ .|.+||+|.+.
T Consensus        33 ~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~  112 (277)
T 1qqf_A           33 RQEALELIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQED  112 (277)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCS
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCC
Confidence            44555563333      345688887543  4678999999999999875  4677788999999995 99999999763


Q ss_pred             CCC-------------CCchhhhHHHHHHHHHcCCC--CCCC--hhhHHHHHHHHHhcCCC-------------------
Q 018000          115 PGQ-------------MPHLATTYAAVNALISLGGE--KSLP--SINRSKVYTFLKCMKDP-------------------  158 (362)
Q Consensus       115 pg~-------------~shl~~Ty~Av~sL~ilg~~--~~l~--~idr~~~~~fL~s~Q~~-------------------  158 (362)
                      .+.             .+.+..|++++.+|...+..  ..+.  ....+++++||.+.+++                   
T Consensus       113 ~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~  192 (277)
T 1qqf_A          113 GPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNK  192 (277)
T ss_dssp             SCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTC
T ss_pred             ccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCC
Confidence            221             22355677788888766320  0011  22356889999987653                   


Q ss_pred             --------------CCceeeccCCC-cccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHh
Q 018000          159 --------------SGAFRMHDAGE-IDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYT  223 (362)
Q Consensus       159 --------------dGgF~~~~~ge-~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~T  223 (362)
                                    +|.|-..+++. .+++  -++++++.++.......+++++.||.+.|+++|||+.       .-.|
T Consensus       193 ~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve--~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T  263 (277)
T 1qqf_A          193 LEEPYLTKFLNTAKDRNRWEEPGQQLYNVE--ATSYALLALLLLKDFDSVPPVVRWLNDERYYGGGYGS-------TQAT  263 (277)
T ss_dssp             CCTTHHHHHHHHSBTTTBCCCTTCHHHHHH--HHHHHHHHHHHTTCTTSHHHHHHHHHHCCCCTTSTTC-------HHHH
T ss_pred             hHHHHHHHHHHhccCCCCCCCCCCccchhH--HHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeec-------chHH
Confidence                          33332222211 1332  3445555555544456788999999999999999975       3568


Q ss_pred             HHHHHHHHH
Q 018000          224 FCGLAAMIL  232 (362)
Q Consensus       224 fcALaaL~l  232 (362)
                      ..||-||+-
T Consensus       264 ~~aL~AL~~  272 (277)
T 1qqf_A          264 FMVFQALAQ  272 (277)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877764

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.01  E-value=3.8e-09  Score=101.30  Aligned_cols=167  Identities=16%  Similarity=0.213  Sum_probs=111.3

Q ss_pred             cCCCCCceecc--CChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhh-ccCCCCCCCCCCCC-------------CC
Q 018000           58 QQLGPSFCSLD--ANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSR-CQDPNGGYGGGPGQ-------------MP  119 (362)
Q Consensus        58 ~~l~~~~~~lD--~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~-~Q~~dGGFgg~pg~-------------~s  119 (362)
                      ++.+|+|..-+  .+.+|++-+++.+|..+..  .+++..++++++||.+ .|.+||+|.+..+.             .+
T Consensus        67 q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~  146 (310)
T 2wy7_A           67 RQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEK  146 (310)
T ss_dssp             BCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCH
T ss_pred             cCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCccccccc
Confidence            45688887543  4678999999999999875  4677788999999996 99999999763221             23


Q ss_pred             chhhhHHHHHHHHHcCCC--CCCC--hhhHHHHHHHHHhcCCC---------------------------------CCce
Q 018000          120 HLATTYAAVNALISLGGE--KSLP--SINRSKVYTFLKCMKDP---------------------------------SGAF  162 (362)
Q Consensus       120 hl~~Ty~Av~sL~ilg~~--~~l~--~idr~~~~~fL~s~Q~~---------------------------------dGgF  162 (362)
                      .+..|.+++.+|...+..  ..+.  ....+++++||.+.+++                                 +|.|
T Consensus       147 ~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~  226 (310)
T 2wy7_A          147 DMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNR  226 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTB
T ss_pred             ccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Confidence            355677788888766320  0011  22356888999987653                                 2222


Q ss_pred             eeccCCC-cccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHh
Q 018000          163 RMHDAGE-IDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILI  233 (362)
Q Consensus       163 ~~~~~ge-~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~ll  233 (362)
                      ...+++. .+++  -++++++.++.......+++++.||.+.|+++|||..       --.|..||-||+..
T Consensus       227 w~~~~~~~~~ve--~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~y  289 (310)
T 2wy7_A          227 WEDPGKQLYNVE--ATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQALAQY  289 (310)
T ss_dssp             CCCSSCHHHHHH--HHHHHHHHHHHHTCTTTHHHHHHHHHHTTCCCCSTTC-------HHHHHHHHHHHHHH
T ss_pred             CCCCCCcccchH--HHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeec-------cHHHHHHHHHHHHH
Confidence            2222110 1332  3445555555444456788999999999999999964       25677777777664

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=98.92  E-value=2.6e-08  Score=108.70  Aligned_cols=201  Identities=12%  Similarity=0.131  Sum_probs=125.5

Q ss_pred             ccCCCCCceeccCChhHHHHHHHHHHHHhCCC--CCHHhH-------HHHHHHHhhccCCCCCCCCCCCCCCchhhhHHH
Q 018000           57 LQQLGPSFCSLDANRPWICYWILHSMALLGEF--VDADLE-------DRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAA  127 (362)
Q Consensus        57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~--~~~~~~-------~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~A  127 (362)
                      |...|.+-...-.++..-..+++.-|...+.-  ++++.+       ++.+++++.+|++||||+..++..++...|.++
T Consensus       255 L~~yPyGC~EQ~~s~~~P~l~~~~yL~~~~q~~~~~~~~~~~a~~~i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv  334 (915)
T 2hr0_B          255 LIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYV  334 (915)
T ss_dssp             GCSSCCCSTTGGGGGTHHHHHHHHHHHHTTCHHHHCTHHHHHHHHHHHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHH
T ss_pred             HHhCCCCcHHHHHHhhhhHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCcceehHHH
Confidence            44456543333455655555566656655531  122233       345566889999999999988888899999999


Q ss_pred             HHHHHHcCCCCCCChhhHHHHHHHHHh-cCCCCCceeeccC-------CCc----ccchHHHHHHHHHHhcc-------C
Q 018000          128 VNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRMHDA-------GEI----DVRACYTAISVASILNI-------L  188 (362)
Q Consensus       128 v~sL~ilg~~~~l~~idr~~~~~fL~s-~Q~~dGgF~~~~~-------ge~----D~r~~Y~al~~~~LL~~-------~  188 (362)
                      +..|..+......+.--..++++||.+ .|++||+|.....       |..    +...++.|.++.+|+..       .
T Consensus       335 ~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~  414 (915)
T 2hr0_B          335 VKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQV  414 (915)
T ss_dssp             HHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTC
T ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCc
Confidence            999988864211222224678999995 9999999975321       111    11224445444444322       1


Q ss_pred             --CHHHHHHHHHHHHhccCC---------------------------------CCC-cCCCCCCC-CchhHhHHHHHHHH
Q 018000          189 --DDELLQNVGNYILSCQTY---------------------------------EGG-IAGEPGSE-AHGGYTFCGLAAMI  231 (362)
Q Consensus       189 --~~~~~~~~~~yI~scQ~~---------------------------------dGG-Fg~~pg~e-sh~~~TfcALaaL~  231 (362)
                        ....++++++||.+.+..                                 +|. |.. ++.. +....|.+||.+|.
T Consensus       415 ~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~w~~-~~~~~~~ve~TayaLlall  493 (915)
T 2hr0_B          415 NSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWED-PGKQLYNVEATSYALLALL  493 (915)
T ss_dssp             TTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTBCCC-SSCHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCCCC-CCCCccchHHHHHHHHHHH
Confidence              124567888898876543                                 121 221 1111 14456788888888


Q ss_pred             HhccCCcccHHHHHHHHHhCCCCCCcccC
Q 018000          232 LINEADRLDLDALIGWVVFRQGVEGGFQG  260 (362)
Q Consensus       232 llg~~~~~d~~~l~~WL~~rQ~~eGGF~G  260 (362)
                      ..+..  ....+.++||.++|..+|||..
T Consensus       494 ~~~~~--~~~~~~v~wL~~qq~~~Ggw~S  520 (915)
T 2hr0_B          494 QLKDF--DFVPPVVRWLNEQRYYGGGYGS  520 (915)
T ss_dssp             HTTCT--TTHHHHHHHHHTCCCSSSSCCS
T ss_pred             hcCCh--hhHHHHHHHHHhcccCCCCccc
Confidence            87764  3578999999999999999974

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=98.82  E-value=4.7e-08  Score=111.24  Aligned_cols=218  Identities=13%  Similarity=0.128  Sum_probs=132.3

Q ss_pred             ccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhH-------HHHHHHHhhccCCCCCCCCCCC----CCCchhhhH
Q 018000           57 LQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLE-------DRTIEFLSRCQDPNGGYGGGPG----QMPHLATTY  125 (362)
Q Consensus        57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~-------~~~i~~l~~~Q~~dGGFgg~pg----~~shl~~Ty  125 (362)
                      |.+.|.+-...-.++..-.-+++.-|.-.+. ++++.+       ++.+++++.+|++||||+..++    ..++...|.
T Consensus       942 L~~yPyGC~EQ~ms~~~P~l~~~~yL~~t~q-~~~~~~~~a~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTA 1020 (1451)
T 4acq_A          942 LLQMPYGCGEXNMVLFAPNIYVLDYLNETQQ-LTPEIKSKAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTA 1020 (1451)
T ss_dssp             GCCCCCSSTTTTHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHH
T ss_pred             HHhCCCCchhhhhhhhhhHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHH
Confidence            4445544333333444444445555554554 554443       4567889999999999997653    468889999


Q ss_pred             HHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc--------CCC-cccchHHHHHHHHHHh--ccC-CHHHH
Q 018000          126 AAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD--------AGE-IDVRACYTAISVASIL--NIL-DDELL  193 (362)
Q Consensus       126 ~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~--------~ge-~D~r~~Y~al~~~~LL--~~~-~~~~~  193 (362)
                      +++..|.........+.--..++++||.+.|++||+|....        +|. .++  .-.|.++.+|+  +.. ....+
T Consensus      1021 yv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~--~lTAyvl~aL~~~g~~~~~~~i 1098 (1451)
T 4acq_A         1021 FVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEV--TLSAYITIALLEIPLTVTHPVV 1098 (1451)
T ss_dssp             HHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHH--HHHHHHHHHHHHTTCCTTCHHH
T ss_pred             HHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCc--cchHHHHHHHHHcCCCCCCHHH
Confidence            99999998874322233335688999999999999998421        221 233  12233323332  221 22446


Q ss_pred             HHHHHHHHhc------------------------------------------cCCCCC---cCCCCC------------C
Q 018000          194 QNVGNYILSC------------------------------------------QTYEGG---IAGEPG------------S  216 (362)
Q Consensus       194 ~~~~~yI~sc------------------------------------------Q~~dGG---Fg~~pg------------~  216 (362)
                      +++++||.++                                          -..+||   |+....            .
T Consensus      1099 ~~A~~~L~~~~~~~~~~~~~~~~y~~AllAyAlal~g~~~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~ 1178 (1451)
T 4acq_A         1099 RNALFCLESAWKTAQEGDHGSHVYTKALLAYAFALAGNQDKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQA 1178 (1451)
T ss_dssp             HHHHHHHHHHHHHHTSSCSSSTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCT
T ss_pred             HHHHHHHHHhhhhcccccccCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCC
Confidence            6666666654                                          112455   432211            0


Q ss_pred             -CCchhHhHHHHHHHHHhccC----CcccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHHHH
Q 018000          217 -EAHGGYTFCGLAAMILINEA----DRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL  281 (362)
Q Consensus       217 -esh~~~TfcALaaL~llg~~----~~~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~ll  281 (362)
                       .+....|.+||.+|..++..    +.....+.++||.+.|...|||..-    -|+....-+++-+...
T Consensus      1179 ~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~~Ggf~ST----QdTv~aL~ALa~Y~~~ 1244 (1451)
T 4acq_A         1179 PSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQGGFSST----QDTVVALHALSKYGAA 1244 (1451)
T ss_dssp             TGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCTTSCCSSH----HHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCCCCCcccH----HHHHHHHHHHHHHHHh
Confidence             12456788999888877632    2234678999999999999999743    2666666666655554

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=98.69  E-value=3.7e-07  Score=89.59  Aligned_cols=168  Identities=15%  Similarity=0.160  Sum_probs=106.1

Q ss_pred             ccCCCCCceecc--CChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhhccCCCCCCCCCCC------------CCCc
Q 018000           57 LQQLGPSFCSLD--ANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGGGPG------------QMPH  120 (362)
Q Consensus        57 l~~l~~~~~~lD--~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg------------~~sh  120 (362)
                      +++-+|+|..-+  ...+|++-+++.+|..++.  .+++...+++++||.+.|++||+|.+...            ..+.
T Consensus       103 ~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~  182 (367)
T 1hzf_A          103 FRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDET  182 (367)
T ss_dssp             TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHH
T ss_pred             ccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCccc
Confidence            345688886543  3678999999999988873  46677889999999999999999986421            1233


Q ss_pred             hhhhHHHHHHHHHcCCC--CCC-------ChhhHHHHHHHHHhc--CC--------------------------------
Q 018000          121 LATTYAAVNALISLGGE--KSL-------PSINRSKVYTFLKCM--KD--------------------------------  157 (362)
Q Consensus       121 l~~Ty~Av~sL~ilg~~--~~l-------~~idr~~~~~fL~s~--Q~--------------------------------  157 (362)
                      +..|.+++.+|...+..  ...       .....++.++||.+.  ++                                
T Consensus       183 ~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~~~~~~~~~L~  262 (367)
T 1hzf_A          183 VALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPADLRGVAHNNLM  262 (367)
T ss_dssp             HHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            66778888888765421  000       001235677888654  21                                


Q ss_pred             ----CCCc--eeeccC----------------------CC-cccchHHHHHHHHHHhcc-CCHHHHHHHHHHHHhccCCC
Q 018000          158 ----PSGA--FRMHDA----------------------GE-IDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYE  207 (362)
Q Consensus       158 ----~dGg--F~~~~~----------------------ge-~D~r~~Y~al~~~~LL~~-~~~~~~~~~~~yI~scQ~~d  207 (362)
                          .+|+  |-....                      +. .++..+  +++++.++.. .+.+...++++||.+.|+++
T Consensus       263 ~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~T--AyaLLall~~~~~~~~~~~iv~WL~~qrn~~  340 (367)
T 1hzf_A          263 AMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETT--AYALLHLLLHEGKAEMADQASAWLTRQGSFQ  340 (367)
T ss_dssp             TTCEECSSCEECC------------------------CCCHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTST
T ss_pred             HHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHH--HHHHHHHHhccCchhhhHHHHHHHHhCcCCC
Confidence                1232  111110                      00 123222  3444444432 23466889999999999999


Q ss_pred             CCcCCCCCCCCchhHhHHHHHHHHHh
Q 018000          208 GGIAGEPGSEAHGGYTFCGLAAMILI  233 (362)
Q Consensus       208 GGFg~~pg~esh~~~TfcALaaL~ll  233 (362)
                      |||+.       --.|..||-||+..
T Consensus       341 Ggw~s-------TqdTvvAL~AL~~y  359 (367)
T 1hzf_A          341 GGFRS-------TQDTVIALDALSAY  359 (367)
T ss_dssp             TCSCS-------HHHHHHHHHHHHHH
T ss_pred             CCccc-------HHHHHHHHHHHHHH
Confidence            99974       25677888777653

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=98.32  E-value=3.8e-05  Score=82.01  Aligned_cols=106  Identities=8%  Similarity=0.024  Sum_probs=76.1

Q ss_pred             CCCCCceeccCChhHHHHHHHHHHHHhCCC--CCHHhHHHH-------HHHHhhccCCCCCCCCCCCCCCchhhhHHHHH
Q 018000           59 QLGPSFCSLDANRPWICYWILHSMALLGEF--VDADLEDRT-------IEFLSRCQDPNGGYGGGPGQMPHLATTYAAVN  129 (362)
Q Consensus        59 ~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~-------i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~  129 (362)
                      ..|.+-...-.++..-..|++.-|...+..  ++++.++++       ++-+++.|++||||+..++..++...|.+++-
T Consensus       326 ~~P~GC~EQ~ms~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~  405 (767)
T 4fxk_B          326 RLPRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLK  405 (767)
T ss_dssp             SCCCCSTTGGGGGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHH
T ss_pred             hccccchhhHHHhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHH
Confidence            455544444456666677888888777652  333444444       44467899999999998888899999999999


Q ss_pred             HHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceee
Q 018000          130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM  164 (362)
Q Consensus       130 sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~  164 (362)
                      +|......-..+.-.....++||.+.|.+||+|..
T Consensus       406 ~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e  440 (767)
T 4fxk_B          406 VLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQD  440 (767)
T ss_dssp             HHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred             HHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchh
Confidence            99988642122222345788999999999999974

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=98.28  E-value=2.3e-06  Score=84.91  Aligned_cols=163  Identities=13%  Similarity=0.163  Sum_probs=93.2

Q ss_pred             hHHHHHHHHhhccCCCCCCCCCCC--------------------------------------CCCchhhhHHHHHHHHHc
Q 018000           93 LEDRTIEFLSRCQDPNGGYGGGPG--------------------------------------QMPHLATTYAAVNALISL  134 (362)
Q Consensus        93 ~~~~~i~~l~~~Q~~dGGFgg~pg--------------------------------------~~shl~~Ty~Av~sL~il  134 (362)
                      ..+++.+.|+..|.++|||.-...                                      .......|..++.+|..+
T Consensus        82 ~A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv  161 (408)
T 1r76_A           82 AARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQV  161 (408)
T ss_dssp             HHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHH
Confidence            457899999999999999965211                                      012234588888888775


Q ss_pred             CCC-C--CCChh--hHHHHHHHHHhcCCCCCceeeccC--CC-------c-ccchHHHHHHHHHHhcc-------CC---
Q 018000          135 GGE-K--SLPSI--NRSKVYTFLKCMKDPSGAFRMHDA--GE-------I-DVRACYTAISVASILNI-------LD---  189 (362)
Q Consensus       135 g~~-~--~l~~i--dr~~~~~fL~s~Q~~dGgF~~~~~--ge-------~-D~r~~Y~al~~~~LL~~-------~~---  189 (362)
                      ... .  .-...  -..+.++||+.+|.++|||.-..-  +.       . |+  +--++.++..++.       ++   
T Consensus       162 ~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDv--t~rvle~L~~~~~~~~~~~~~~~~~  239 (408)
T 1r76_A          162 VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDA--LVHVAELLSDIAAGRDGFGFVPPAI  239 (408)
T ss_dssp             HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGH--HHHHHHHHHHHHHTCTTCTTSCHHH
T ss_pred             HhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHH--HHHHHHHHHHHHhccCcccccchhh
Confidence            321 0  00010  125789999999999999964311  00       1 22  2222222322222       11   


Q ss_pred             ----HHHHHHHHHHHHhccCC-CCCcCCCCCCCCchhH-------------hHHHHHHH----HHhccCCcc-----cHH
Q 018000          190 ----DELLQNVGNYILSCQTY-EGGIAGEPGSEAHGGY-------------TFCGLAAM----ILINEADRL-----DLD  242 (362)
Q Consensus       190 ----~~~~~~~~~yI~scQ~~-dGGFg~~pg~esh~~~-------------TfcALaaL----~llg~~~~~-----d~~  242 (362)
                          ...++++++||+++|-. ||.+-..  +--|..-             +.+++.+.    .||+....-     -++
T Consensus       240 ~~~~~~av~Rgi~~Ll~~Qe~~dGsw~rW--g~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~  317 (408)
T 1r76_A          240 RTRALEATNAAIHCIVETQVVQDGKRLGW--GQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIR  317 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCEETTEECCC--CSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhhcccCCcccch--hcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHH
Confidence                24578999999999999 8875421  1111111             11222222    334433221     279


Q ss_pred             HHHHHHHhCCCCCCccc
Q 018000          243 ALIGWVVFRQGVEGGFQ  259 (362)
Q Consensus       243 ~l~~WL~~rQ~~eGGF~  259 (362)
                      ++++||.+.|.++|||.
T Consensus       318 ~Av~WL~s~Q~~dg~w~  334 (408)
T 1r76_A          318 GGVAWLNTSVIRDRAWV  334 (408)
T ss_dssp             HHHHHHHHSCCCC----
T ss_pred             HHHHHHHHhhcCCCcee
Confidence            99999999999999987

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=98.19  E-value=4.2e-05  Score=88.23  Aligned_cols=199  Identities=15%  Similarity=0.166  Sum_probs=118.0

Q ss_pred             ccCCCCCceeccCChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHH-------HhhccCCCCCCCCCCCCCCchhhhHHH
Q 018000           57 LQQLGPSFCSLDANRPWICYWILHSMALLGEF--VDADLEDRTIEF-------LSRCQDPNGGYGGGPGQMPHLATTYAA  127 (362)
Q Consensus        57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~-------l~~~Q~~dGGFgg~pg~~shl~~Ty~A  127 (362)
                      |...|.+-...-.++..-..+++.-|...+..  +.++.+++++++       ++..|++||||+..++..++...|.++
T Consensus      1002 L~~~PyGC~EQ~~s~~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv 1081 (1661)
T 2b39_A         1002 LIQTPSGCGEQNMIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYV 1081 (1661)
T ss_dssp             SSSSCCCSTTGGGGGTHHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHH
T ss_pred             HhhcCCCchhhhhhhcccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHH
Confidence            44456443333456655555666666666541  223444455544       568999999999988888999999999


Q ss_pred             HHHHHHcCCCCCCChhhHHHHHHHHHh-cCCCCCceeecc--------CCC-----cccchHHHHHHHHHHhcc------
Q 018000          128 VNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRMHD--------AGE-----IDVRACYTAISVASILNI------  187 (362)
Q Consensus       128 v~sL~ilg~~~~l~~idr~~~~~fL~s-~Q~~dGgF~~~~--------~ge-----~D~r~~Y~al~~~~LL~~------  187 (362)
                      +..|..+...-..+.--..++++||.+ .|+++|+|....        +|.     .++  .+.|.++.+|+..      
T Consensus      1082 ~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~--~ltAyvl~aL~~~~~~~~~ 1159 (1661)
T 2b39_A         1082 VKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDV--SLTAFVLIALHEAKDICEA 1159 (1661)
T ss_dssp             HHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSH--HHHHHHHHHHHHTTTTTTT
T ss_pred             HHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCcc--ccHHHHHHHHHhccccccc
Confidence            999998864212222224678999995 999999996421        111     133  3344444444322      


Q ss_pred             -C--CHHHHHHHHHHHHhccC---------------------------------CCCC-cCCCCCC-CCchhHhHHHHHH
Q 018000          188 -L--DDELLQNVGNYILSCQT---------------------------------YEGG-IAGEPGS-EAHGGYTFCGLAA  229 (362)
Q Consensus       188 -~--~~~~~~~~~~yI~scQ~---------------------------------~dGG-Fg~~pg~-esh~~~TfcALaa  229 (362)
                       .  ....+.++.+||.+...                                 .+|. |. .++. ......|.+||.+
T Consensus      1160 ~~~~~~~~i~~a~~yL~~~~~~~~~~y~~A~layAL~l~g~~a~~~l~~L~~~~~~~~~W~-~~~~~~~~vE~tayaLla 1238 (1661)
T 2b39_A         1160 QVNSLGRSIAKAGDFLENHYRELRRPYTVAIAAYALALLGKLEGDRLTKFLNTAKEKNRWE-EPNQKLYNVEATSYALLA 1238 (1661)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCC-CSSCHHHHHHHHHHHHHH
T ss_pred             cCcchhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCCcHHHHHHHHHhhccCCCCCC-CCCCCcchHHHHHHHHHH
Confidence             1  11234445555543211                                 0121 21 1111 1133467778888


Q ss_pred             HHHhccCCcccHHHHHHHHHhCCCCCCcccC
Q 018000          230 MILINEADRLDLDALIGWVVFRQGVEGGFQG  260 (362)
Q Consensus       230 L~llg~~~~~d~~~l~~WL~~rQ~~eGGF~G  260 (362)
                      |...+...  .....++||.+.|...|||..
T Consensus      1239 ll~~~~~~--~~~~iv~wL~~qr~~~gg~~S 1267 (1661)
T 2b39_A         1239 LLARKDYD--TTPPVVRWLNEQRYYGGGYGS 1267 (1661)
T ss_dssp             HHHHTCTT--TSHHHHHHHHHCCTBTTBBCS
T ss_pred             HHhcCChh--hHHHHHHHHHhcccCCCCccc
Confidence            77776543  367889999998888899975

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=98.07  E-value=3.1e-05  Score=84.49  Aligned_cols=167  Identities=17%  Similarity=0.233  Sum_probs=104.7

Q ss_pred             cCCCCCceec--cCChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhh-ccCCCCCCCCCCCC-------------CC
Q 018000           58 QQLGPSFCSL--DANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSR-CQDPNGGYGGGPGQ-------------MP  119 (362)
Q Consensus        58 ~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~-~Q~~dGGFgg~pg~-------------~s  119 (362)
                      ++-+|+|..-  +.+.+|++=+++..|..+..  .+++...+++++||.+ .|.++|.|.+....             .+
T Consensus       312 Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~  391 (915)
T 2hr0_B          312 RQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEK  391 (915)
T ss_dssp             CCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTH
T ss_pred             hcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCcccc
Confidence            4568888753  34568999999999888763  3677788999999995 99999999642110             13


Q ss_pred             chhhhHHHHHHHHHcCCCC--CCChh--hHHHHHHHHHhcCCC---------------------------------CCce
Q 018000          120 HLATTYAAVNALISLGGEK--SLPSI--NRSKVYTFLKCMKDP---------------------------------SGAF  162 (362)
Q Consensus       120 hl~~Ty~Av~sL~ilg~~~--~l~~i--dr~~~~~fL~s~Q~~---------------------------------dGgF  162 (362)
                      .+..|.+++.+|...|...  .+...  ...++++||.+.+..                                 +|.|
T Consensus       392 ~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~  471 (915)
T 2hr0_B          392 DMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNR  471 (915)
T ss_dssp             HHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTB
T ss_pred             ccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC
Confidence            4566777888887775310  11111  234677888775432                                 1221


Q ss_pred             eeccCCC-cccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHh
Q 018000          163 RMHDAGE-IDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILI  233 (362)
Q Consensus       163 ~~~~~ge-~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~ll  233 (362)
                      ....++. .+++.+  +++++.++.........+++.||.+.|+.+|||...       -.|..||-||+..
T Consensus       472 w~~~~~~~~~ve~T--ayaLlall~~~~~~~~~~~v~wL~~qq~~~Ggw~ST-------QdT~~Al~AL~~y  534 (915)
T 2hr0_B          472 WEDPGKQLYNVEAT--SYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGST-------QATFMVFQALAQY  534 (915)
T ss_dssp             CCCSSCHHHHHHHH--HHHHHHHHHTTCTTTHHHHHHHHHTCCCSSSSCCSH-------HHHHHHHHHHHHH
T ss_pred             CCCCCCCccchHHH--HHHHHHHHhcCChhhHHHHHHHHHhcccCCCCccch-------hhHHHHHHHHHHH
Confidence            1111110 133333  344444443333345788999999999999999742       4577777777654

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=98.06  E-value=2.8e-05  Score=87.84  Aligned_cols=179  Identities=17%  Similarity=0.154  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHh------ccCCCCCceec--cCChhHHHHHHHHHHHHhC---CCCCHHhHHHHHHHHhhccCCCCCCCCC
Q 018000           46 RKNHVEYLLRG------LQQLGPSFCSL--DANRPWICYWILHSMALLG---EFVDADLEDRTIEFLSRCQDPNGGYGGG  114 (362)
Q Consensus        46 r~~H~~yl~~~------l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg---~~~~~~~~~~~i~~l~~~Q~~dGGFgg~  114 (362)
                      +++-.+++.+.      +++-+|+|..-  +.+.+|++-+++.+|..+.   ..+++...+++++||.+.|.+||.|-+.
T Consensus       867 ~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~  946 (1325)
T 2pn5_A          867 IDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKA  946 (1325)
T ss_dssp             HHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCcccc
Confidence            45556666443      34557887643  4467899999999999874   3477788899999999999999998653


Q ss_pred             CC---------CCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCC-CCceeec-------------------
Q 018000          115 PG---------QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDP-SGAFRMH-------------------  165 (362)
Q Consensus       115 pg---------~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~-dGgF~~~-------------------  165 (362)
                      ..         .....+.|.+++.+|.-.|....-.....+++++||.+.+.. +++|...                   
T Consensus       947 ~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~ 1026 (1325)
T 2pn5_A          947 GAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALN 1026 (1325)
T ss_dssp             SCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHH
T ss_pred             ccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHH
Confidence            11         112344444444444332210000012345677888876554 4544211                   


Q ss_pred             ----------------cCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHH
Q 018000          166 ----------------DAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAA  229 (362)
Q Consensus       166 ----------------~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaa  229 (362)
                                      +....+++.+  |+++++++.........+++.||++.|+.+|||..       --.|..||-|
T Consensus      1027 ~L~~~~~~~~~~~~~~w~~~s~ve~t--A~aLlall~~~~~~~~~~~v~wL~~q~~~~g~w~s-------Tq~T~~aL~A 1097 (1325)
T 2pn5_A         1027 KLIDMSFIDADKNERFWNTTNPIETT--AYALLSFVMAEKYTDGIPVMNWLVNQRYVTGSFPS-------TQDTFVGLKA 1097 (1325)
T ss_dssp             HHHHTCEEETTTTEEECCSSSHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTSSCSS-------HHHHHHHHHH
T ss_pred             HHHhhhhhccCCCcccCCCCCchHHH--HHHHHHHhhhccchhhHHHHHHHHhccCCCCCccc-------hHHHHHHHHH
Confidence                            0011233332  45555555544455678899999999999999973       2456777777


Q ss_pred             HHHh
Q 018000          230 MILI  233 (362)
Q Consensus       230 L~ll  233 (362)
                      |...
T Consensus      1098 L~~y 1101 (1325)
T 2pn5_A         1098 LTKM 1101 (1325)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=97.91  E-value=3.4e-05  Score=76.55  Aligned_cols=118  Identities=11%  Similarity=0.077  Sum_probs=72.7

Q ss_pred             hHHHHHHHHhhccCCCCCCCCC-CCC---CCch----hhhHHHHHHHHHcCCC-CCCChhh----------HHHHHHHHH
Q 018000           93 LEDRTIEFLSRCQDPNGGYGGG-PGQ---MPHL----ATTYAAVNALISLGGE-KSLPSIN----------RSKVYTFLK  153 (362)
Q Consensus        93 ~~~~~i~~l~~~Q~~dGGFgg~-pg~---~shl----~~Ty~Av~sL~ilg~~-~~l~~id----------r~~~~~fL~  153 (362)
                      -..|.++||+.+|+++|||+.. |..   ..|+    -.|--.+..|..++.. ..+..++          .++.++||+
T Consensus       176 Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll  255 (408)
T 1r76_A          176 AALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIV  255 (408)
T ss_dssp             HHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHH
Confidence            4568999999999999999864 211   1111    1344556666665431 1122222          257899999


Q ss_pred             hcCCC-CCceeeccC-----CC-----------cccchHHHHHHHHHHhccCCH-----HHHHHHHHHHHhccCCCCCcC
Q 018000          154 CMKDP-SGAFRMHDA-----GE-----------IDVRACYTAISVASILNILDD-----ELLQNVGNYILSCQTYEGGIA  211 (362)
Q Consensus       154 s~Q~~-dGgF~~~~~-----ge-----------~D~r~~Y~al~~~~LL~~~~~-----~~~~~~~~yI~scQ~~dGGFg  211 (362)
                      +.|.+ ||+|. ..+     |.           .-+.+.=+++.+..|+....+     ..++++++||.++|+.||||-
T Consensus       256 ~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~  334 (408)
T 1r76_A          256 ETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWV  334 (408)
T ss_dssp             HHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC----
T ss_pred             HhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhcCCCcee
Confidence            99999 99997 432     11           122233344555566665432     258899999999999999986

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=97.87  E-value=1.4e-05  Score=79.58  Aligned_cols=115  Identities=15%  Similarity=-0.013  Sum_probs=75.3

Q ss_pred             HHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCC-------HHHHHHHH-
Q 018000          126 AAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD-------DELLQNVG-  197 (362)
Q Consensus       126 ~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~-------~~~~~~~~-  197 (362)
                      .+|.||+..|.+     + ++..++.|...+. +++|.....-.+|+    .|+++++|..+..       ...+++++ 
T Consensus       141 L~vLALC~~g~~-----v-~~~~v~~Ll~~~~-~~~~~~g~~~sVDT----~AMA~lAL~C~~~~~~~~~~~~~i~~al~  209 (414)
T 2bb6_A          141 LGILALCVHQKR-----V-HDSVVGKLLYAVE-HKPHLLQDHVSVDT----MAMAGMAFSCLELSNLNPKQRNRINLALK  209 (414)
T ss_dssp             HHHHHHHHTTCC-----C-CHHHHHHHHHHHH-SSSCSCCTTTHHHH----HHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHcCCC-----c-cHHHHHHHHHHhh-ccCcCCCCcccccH----HHHHHHHHHHHhhcCCCcchHHHHHHHHH
Confidence            567788888753     2 2345555555554 34554222223454    4555555432211       23355555 


Q ss_pred             ---HHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc---ccHHHHHHHHHhCCCCCCccc
Q 018000          198 ---NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR---LDLDALIGWVVFRQGVEGGFQ  259 (362)
Q Consensus       198 ---~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~---~d~~~l~~WL~~rQ~~eGGF~  259 (362)
                         ++|++-|+.||+||       +...|..|+.||...+....   .+..++++||.+ |..+|+|+
T Consensus       210 ~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~  269 (414)
T 2bb6_A          210 RVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ  269 (414)
T ss_dssp             HHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred             HHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC
Confidence               88889999999997       24558899999988887543   367789999998 99999997

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=97.80  E-value=2.9e-06  Score=97.57  Aligned_cols=211  Identities=13%  Similarity=0.123  Sum_probs=0.0

Q ss_pred             CCCCceeccCChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHH-------HhhccCCCCCCCCCCCCCCchhhhHHHHHH
Q 018000           60 LGPSFCSLDANRPWICYWILHSMALLGEF--VDADLEDRTIEF-------LSRCQDPNGGYGGGPGQMPHLATTYAAVNA  130 (362)
Q Consensus        60 l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~-------l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~s  130 (362)
                      +|.+-...-.++..-..+++.-|+..+..  +.++.+++++++       ++++|++||||+...+..++.+-|.+++-+
T Consensus       989 ~PyGCgEQnms~~~P~v~v~~yL~~t~q~~~~~~e~~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~ 1068 (1642)
T 3prx_B          989 TPSGCGEQNMIRMAAPVIATYYLDTTEQWETLGINRRTEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKV 1068 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHH
Confidence            45443333344444444444444444331  113344555554       567999999999876677888899999988


Q ss_pred             HHHcCCCCCCChhh---HHHHHHHHHh-cCCCCCceeecc--------CC----CcccchHHHHHHHHHHhccCC-----
Q 018000          131 LISLGGEKSLPSIN---RSKVYTFLKC-MKDPSGAFRMHD--------AG----EIDVRACYTAISVASILNILD-----  189 (362)
Q Consensus       131 L~ilg~~~~l~~id---r~~~~~fL~s-~Q~~dGgF~~~~--------~g----e~D~r~~Y~al~~~~LL~~~~-----  189 (362)
                      |......  ...||   ..++++||.+ .|++||+|....        +|    +.++  +-+|.++.+|+....     
T Consensus      1069 f~~A~~~--i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~--~lTA~vliaL~e~~~~~~~~ 1144 (1642)
T 3prx_B         1069 FAMAAKM--VAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEV--YLTAFILVALLESKTICNDY 1144 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhh--ccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcc--cchHHHHHHHHhcccccccc
Confidence            8876531  11133   3578999998 899999996421        22    2233  445555555543211     


Q ss_pred             ----HHHHHHHHHHHHhccC-----CC-------------------------CCcCC-CCCC-CCchhHhHHHHHHHHHh
Q 018000          190 ----DELLQNVGNYILSCQT-----YE-------------------------GGIAG-EPGS-EAHGGYTFCGLAAMILI  233 (362)
Q Consensus       190 ----~~~~~~~~~yI~scQ~-----~d-------------------------GGFg~-~pg~-esh~~~TfcALaaL~ll  233 (362)
                          ...++++..||.+.-.     |.                         |+.-+ .|+. ......|.+||.|+..+
T Consensus      1145 ~~~~~~~i~~a~~~L~~~~~~~~~~Y~~Ai~aYAl~l~~~~~~~~l~~l~~~~~~~W~~~~~~~~~VE~TaYaLLa~l~~ 1224 (1642)
T 3prx_B         1145 VNSLDSSIKKATNYLLKKYEKLQRPYTTALTAYALAAADQLNDDRVLMAASTGRDHWEEYNAHTHNIEGTSYALLALLKM 1224 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccchHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhcc
Confidence                1235566666653210     00                         11000 1111 12456788888887766


Q ss_pred             ccCCcccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHHH
Q 018000          234 NEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFAL  280 (362)
Q Consensus       234 g~~~~~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~l  280 (362)
                      +.  .......++||.+.|+..|||..-    -|++=..-+++-+..
T Consensus      1225 ~~--~~~a~~iv~WL~~qr~~~Ggf~ST----QdTvvaLqALa~Y~~ 1265 (1642)
T 3prx_B         1225 KK--FDQTGPIVRWLTDQNFYGETYGQT----QATVMAFQALAEYEI 1265 (1642)
T ss_dssp             -----------------------------------------------
T ss_pred             Cc--hhhHHHHHHHHHHhccCCCcccCc----HHHHHHHHHHHHHHH
Confidence            53  235688999999999999999853    244444444444433

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=97.80  E-value=0.00015  Score=72.28  Aligned_cols=133  Identities=11%  Similarity=-0.021  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCC----ChhhH--HHH
Q 018000           75 CYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSL----PSINR--SKV  148 (362)
Q Consensus        75 ~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l----~~idr--~~~  148 (362)
                      .=|.+-+|.+-|..+++    +.+..+...|. +++|.-+  ....+-+|..|+++|..++.....    ..|++  +.+
T Consensus       139 ~sL~vLALC~~g~~v~~----~~v~~Ll~~~~-~~~~~~g--~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l  211 (414)
T 2bb6_A          139 YSLGILALCVHQKRVHD----SVVGKLLYAVE-HKPHLLQ--DHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRV  211 (414)
T ss_dssp             HHHHHHHHHHTTCCCCH----HHHHHHHHHHH-SSSCSCC--TTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCccH----HHHHHHHHHhh-ccCcCCC--CcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Confidence            34666667777877654    45555555454 4566522  245789999999999999752111    11322  345


Q ss_pred             HHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhc--cCCH---HHHHHHHHHHHhccCCCCCcCCCCCCCCchhHh
Q 018000          149 YTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN--ILDD---ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYT  223 (362)
Q Consensus       149 ~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~--~~~~---~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~T  223 (362)
                      +++|.+.|++||+|.       ++.+  +++++-.|+.  ....   ....++.++|++ |..||+|+       .+..|
T Consensus       212 ~~~l~~~Q~~dG~FG-------N~~S--T~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~at  274 (414)
T 2bb6_A          212 QEKILKAQTPEGYFG-------NVYS--TPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMI  274 (414)
T ss_dssp             HHHHHHTBCTTSCBS-------STTT--HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHH
T ss_pred             HHHHHHhhcCCCCcc-------chhh--HHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHH
Confidence            688899999999994       3433  4555555543  3222   367789999999 99999997       34566


Q ss_pred             HHHHHHHH
Q 018000          224 FCGLAAMI  231 (362)
Q Consensus       224 fcALaaL~  231 (362)
                      .-+|-+|.
T Consensus       275 aQ~lpaL~  282 (414)
T 2bb6_A          275 SQLLPVLN  282 (414)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            66665544

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=97.79  E-value=5.3e-06  Score=80.19  Aligned_cols=154  Identities=16%  Similarity=0.185  Sum_probs=91.5

Q ss_pred             HHHHHhhccCCCCCCCCCC-------------CCCCchhhhHHHHHHHHHcCCCCCCChh--hHHHHHHHHHhcCCCCCc
Q 018000           97 TIEFLSRCQDPNGGYGGGP-------------GQMPHLATTYAAVNALISLGGEKSLPSI--NRSKVYTFLKCMKDPSGA  161 (362)
Q Consensus        97 ~i~~l~~~Q~~dGGFgg~p-------------g~~shl~~Ty~Av~sL~ilg~~~~l~~i--dr~~~~~fL~s~Q~~dGg  161 (362)
                      +.+.|+..|+++|||.-..             ...+....|..++.+|+-+.....-...  -.++.++||+.+|.++||
T Consensus        36 ~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGG  115 (332)
T 1gxm_A           36 RADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGA  115 (332)
T ss_dssp             GHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred             HHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCC
Confidence            4778889999999997631             1235666799999999776321000010  125789999999999999


Q ss_pred             eeecc-C-CC-------c-ccchHHHHHHHHHHhcc----C------------CHHHHHHHHHHHHhccCCCCCcCCCCC
Q 018000          162 FRMHD-A-GE-------I-DVRACYTAISVASILNI----L------------DDELLQNVGNYILSCQTYEGGIAGEPG  215 (362)
Q Consensus       162 F~~~~-~-ge-------~-D~r~~Y~al~~~~LL~~----~------------~~~~~~~~~~yI~scQ~~dGGFg~~pg  215 (362)
                      |.... . +.       . |+  +--++-++..++.    .            ....++++++||+++|-.+||+-+. .
T Consensus       116 WpqFdpd~~~Yl~~IpFnDDv--tarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~-W  192 (332)
T 1gxm_A          116 LPQFYPLKGGYSDHATFNDNG--MAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTV-W  192 (332)
T ss_dssp             CBSEESCCSGGGGSEECGGGH--HHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECC-C
T ss_pred             ccccCCCcccccccCCcchHH--HHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCe-e
Confidence            97531 1 10       1 22  2223333333321    1            1245789999999999999875432 1


Q ss_pred             CCCchhHhH-------------HHHHHH----HHhccCCcc----cHHHHHHHHHhCCC
Q 018000          216 SEAHGGYTF-------------CGLAAM----ILINEADRL----DLDALIGWVVFRQG  253 (362)
Q Consensus       216 ~esh~~~Tf-------------cALaaL----~llg~~~~~----d~~~l~~WL~~rQ~  253 (362)
                      +--|...|.             |++.+.    .+|+.+...    -++++++||.+.|.
T Consensus       193 g~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~  251 (332)
T 1gxm_A          193 CAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT  251 (332)
T ss_dssp             CSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred             ccccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence            111222222             222222    234544322    27899999999997

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=97.76  E-value=0.00026  Score=80.76  Aligned_cols=163  Identities=17%  Similarity=0.215  Sum_probs=105.2

Q ss_pred             cCCCCCceec------cCChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhhccCCCCCCCCC-C--------CCCCc
Q 018000           58 QQLGPSFCSL------DANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGGG-P--------GQMPH  120 (362)
Q Consensus        58 ~~l~~~~~~l------D~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~~Q~~dGGFgg~-p--------g~~sh  120 (362)
                      +.-+|+|..-      +.+.+|++=+++..|.....  .+++...+++++||.+.|.+||.|... +        |...+
T Consensus       996 q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~ 1075 (1451)
T 4acq_A          996 KHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDE 1075 (1451)
T ss_dssp             BCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCH
T ss_pred             cCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCC
Confidence            4567888754      24678999999999998874  467788999999999999999999731 1        11356


Q ss_pred             hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhc------------------------------------------CCC
Q 018000          121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCM------------------------------------------KDP  158 (362)
Q Consensus       121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~------------------------------------------Q~~  158 (362)
                      +..|.+++.+|...|... .+ ...+++++||.+.                                          ...
T Consensus      1076 ~~lTAyvl~aL~~~g~~~-~~-~~i~~A~~~L~~~~~~~~~~~~~~~~y~~AllAyAlal~g~~~~~~~~l~~L~~~a~~ 1153 (1451)
T 4acq_A         1076 VTLSAYITIALLEIPLTV-TH-PVVRNALFCLESAWKTAQEGDHGSHVYTKALLAYAFALAGNQDKRKEVLKSLNEEAVK 1153 (1451)
T ss_dssp             HHHHHHHHHHHHHTTCCT-TC-HHHHHHHHHHHHHHHHHTSSCSSSTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCB
T ss_pred             ccchHHHHHHHHHcCCCC-CC-HHHHHHHHHHHHhhhhcccccccCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhc
Confidence            777999999998887531 11 1234555555532                                          112


Q ss_pred             CCceeeccCC-----------------CcccchHHHHHHHHHHhccC------CHHHHHHHHHHHHhccCCCCCcCCCCC
Q 018000          159 SGAFRMHDAG-----------------EIDVRACYTAISVASILNIL------DDELLQNVGNYILSCQTYEGGIAGEPG  215 (362)
Q Consensus       159 dGgF~~~~~g-----------------e~D~r~~Y~al~~~~LL~~~------~~~~~~~~~~yI~scQ~~dGGFg~~pg  215 (362)
                      +|+.. +++.                 ..+++.  +|+++++++...      +.....+++.||.+.|++.|||+..  
T Consensus      1154 ~~~~~-~W~~~~~~~~~~~~~~~~~~~s~~vE~--TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~~Ggf~ST-- 1228 (1451)
T 4acq_A         1154 KDNSV-HWERPQKPKAPVGHFYEPQAPSAEVEM--TSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQGGFSST-- 1228 (1451)
T ss_dssp             CSSCB-CCCCCCCSSSCSSSTTCCCTTGGGGTH--HHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCTTSCCSSH--
T ss_pred             cCCce-ecCCCCCCccccccccccCCchHHHHH--HHHHHHHHhhccccccccchhhHHHHHHHHHHcCCCCCCcccH--
Confidence            34421 1110                 122322  344455555442      1235678999999999999999742  


Q ss_pred             CCCchhHhHHHHHHHHH
Q 018000          216 SEAHGGYTFCGLAAMIL  232 (362)
Q Consensus       216 ~esh~~~TfcALaaL~l  232 (362)
                           -.|..||-||+-
T Consensus      1229 -----QdTv~aL~ALa~ 1240 (1451)
T 4acq_A         1229 -----QDTVVALHALSK 1240 (1451)
T ss_dssp             -----HHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHH
Confidence                 356777776654

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=97.64  E-value=0.00046  Score=79.73  Aligned_cols=96  Identities=9%  Similarity=0.010  Sum_probs=65.7

Q ss_pred             CChhHHHHHHHHHHHHhCC----C-CCHHhHHHHHHH-------HhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCC
Q 018000           69 ANRPWICYWILHSMALLGE----F-VDADLEDRTIEF-------LSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGG  136 (362)
Q Consensus        69 ~sr~w~~Yw~l~sL~lLg~----~-~~~~~~~~~i~~-------l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~  136 (362)
                      .++..-..+++.-|...+.    . ..++.+++++++       ++..|++||||+..++..++...|.+++..|..+..
T Consensus      1012 ~s~~~P~~~~~~yL~~~~qw~~l~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~ 1091 (1676)
T 3cu7_A         1012 LMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNK 1091 (1676)
T ss_dssp             HTTSHHHHHHHHHHHHTTCGGGCSSCHHHHHHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHhhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHh
Confidence            4554444455555555443    0 112345555555       568999999999887788999999999999988764


Q ss_pred             CCCCChhhHHHHHHHHHh-cCCCCCceee
Q 018000          137 EKSLPSINRSKVYTFLKC-MKDPSGAFRM  164 (362)
Q Consensus       137 ~~~l~~idr~~~~~fL~s-~Q~~dGgF~~  164 (362)
                      .-..+.--..++++||.+ .|+++|+|..
T Consensus      1092 ~~~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1120 (1676)
T 3cu7_A         1092 YVEQNQNSICNSLLWLVENYQLDNGSFKE 1120 (1676)
T ss_dssp             TSCCCHHHHHHHHHHHHHHSBCTTSCBCC
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCCCcccC
Confidence            212222224678999999 9999999964

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=97.52  E-value=0.00012  Score=72.52  Aligned_cols=110  Identities=13%  Similarity=0.083  Sum_probs=77.5

Q ss_pred             HHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCC--------------HHH
Q 018000          127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD--------------DEL  192 (362)
Q Consensus       127 Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~--------------~~~  192 (362)
                      +++||+..+.     .+ +...++-|...++.+|+     .-.+|+    .|+++++|..+..              ...
T Consensus       120 ~vLALC~~~~-----~v-~~~~v~kLl~~~~~~g~-----~~sVDT----~AMa~LAL~C~~~~~~~~~~~~~~~~i~~a  184 (399)
T 2pmv_A          120 AILALCQKNS-----EA-TLPIAVRFAKTLLANSS-----PFNVDT----GAMATLALTCMYNKIPVGSEEGYRSLFGQV  184 (399)
T ss_dssp             HHHHHHHHCH-----HH-HHHHHHHHHHHHHHCCS-----CCCHHH----HHHHHHHHHHHHTBCCTTCCSSHHHHHHHH
T ss_pred             HHHHHHhcCC-----CC-CHHHHHHHHHHHHccCC-----cccchH----HHHHHHHHHHHhhccccccchhhHHHHHHH
Confidence            5666666663     23 34555555555555642     124565    5666666543211              245


Q ss_pred             HHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccC--CcccHHHHHHHHHhCCCCCCccc
Q 018000          193 LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA--DRLDLDALIGWVVFRQGVEGGFQ  259 (362)
Q Consensus       193 ~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~--~~~d~~~l~~WL~~rQ~~eGGF~  259 (362)
                      +++++++|++-|+.||+||       +...|--|+.||...+..  ...+..+.++||.. |..+|+|+
T Consensus       185 i~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~  245 (399)
T 2pmv_A          185 LKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH  245 (399)
T ss_dssp             HHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred             HHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC
Confidence            7789999999999999997       578899999999999873  23478999999998 88999997

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=97.51  E-value=6.9e-05  Score=72.44  Aligned_cols=124  Identities=10%  Similarity=0.087  Sum_probs=81.7

Q ss_pred             HHHHHHHhcCCCCCceeecc-------------CCCcccchHHHHHHHHHHhccC--C---HHHHHHHHHHHHhccCCCC
Q 018000          147 KVYTFLKCMKDPSGAFRMHD-------------AGEIDVRACYTAISVASILNIL--D---DELLQNVGNYILSCQTYEG  208 (362)
Q Consensus       147 ~~~~fL~s~Q~~dGgF~~~~-------------~ge~D~r~~Y~al~~~~LL~~~--~---~~~~~~~~~yI~scQ~~dG  208 (362)
                      ++.+-|+..|.++|||....             ..-.|...|..++..+.-+...  .   ...++++++||++.|..+|
T Consensus        35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG  114 (332)
T 1gxm_A           35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  114 (332)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence            35788889999999997531             1225665666655544322211  1   2567899999999999999


Q ss_pred             CcCCC-CCCC-Cch------hHhHHHHHHHHHhccC----------------CcccHHHHHHHHHhCCCCCCcccCC--C
Q 018000          209 GIAGE-PGSE-AHG------GYTFCGLAAMILINEA----------------DRLDLDALIGWVVFRQGVEGGFQGR--T  262 (362)
Q Consensus       209 GFg~~-pg~e-sh~------~~TfcALaaL~llg~~----------------~~~d~~~l~~WL~~rQ~~eGGF~GR--~  262 (362)
                      ||+.. |... -|.      .-|.-.|-.|..++..                ...-++++++||+..|.++||+.||  .
T Consensus       115 GWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg~  194 (332)
T 1gxm_A          115 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCA  194 (332)
T ss_dssp             CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCS
T ss_pred             CccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeecc
Confidence            99975 3221 011      2344566666666421                1123689999999999999999998  5


Q ss_pred             CCCCcccc
Q 018000          263 NKLVDGCY  270 (362)
Q Consensus       263 nKlvD~CY  270 (362)
                      |....+.-
T Consensus       195 qydygT~~  202 (332)
T 1gxm_A          195 QHGALDYQ  202 (332)
T ss_dssp             EECTTTCC
T ss_pred             cccccccc
Confidence            55555565

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=96.60  E-value=0.015  Score=61.99  Aligned_cols=135  Identities=18%  Similarity=0.127  Sum_probs=80.5

Q ss_pred             CCCchhhhHHHHHHHHHcCCCCCCChhhHHH-------HHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhc---
Q 018000          117 QMPHLATTYAAVNALISLGGEKSLPSINRSK-------VYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN---  186 (362)
Q Consensus       117 ~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~-------~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~---  186 (362)
                      ..+.++++..+...|...+....+..--+++       .+.=+.+.|++||||....++..++.-|-.++-++....   
T Consensus       335 ~ms~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i  414 (767)
T 4fxk_B          335 TMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQV  414 (767)
T ss_dssp             GGGGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSS
T ss_pred             HHHhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhc
Confidence            4677777777777777666432232222333       445566789999999987665555432222222222222   


Q ss_pred             cCCHHHHHHHHHHHHhccCCCCCcCCCC------------CCCCchhHhHHHHHHHHHhccCCc------------ccHH
Q 018000          187 ILDDELLQNVGNYILSCQTYEGGIAGEP------------GSEAHGGYTFCGLAAMILINEADR------------LDLD  242 (362)
Q Consensus       187 ~~~~~~~~~~~~yI~scQ~~dGGFg~~p------------g~esh~~~TfcALaaL~llg~~~~------------~d~~  242 (362)
                      ..++..+.++..||++.|..+|.|....            +.+.....|.+.+.+|...+....            ..+.
T Consensus       415 ~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~  494 (767)
T 4fxk_B          415 GGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASIS  494 (767)
T ss_dssp             SCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHH
Confidence            2456778899999999999999996421            112234567777777765443211            1245


Q ss_pred             HHHHHHHhC
Q 018000          243 ALIGWVVFR  251 (362)
Q Consensus       243 ~l~~WL~~r  251 (362)
                      +++.||..+
T Consensus       495 ka~~~L~~~  503 (767)
T 4fxk_B          495 KANSFLGEK  503 (767)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            677777654

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=96.32  E-value=0.025  Score=65.35  Aligned_cols=135  Identities=16%  Similarity=0.085  Sum_probs=80.4

Q ss_pred             CCCchhhhHHHHHHHHHcCCCCCCChhhHHHH-------HHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHh---c
Q 018000          117 QMPHLATTYAAVNALISLGGEKSLPSINRSKV-------YTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL---N  186 (362)
Q Consensus       117 ~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~-------~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL---~  186 (362)
                      ..+...+...+...|...+....+..-.++++       +.=+++.|++||||....+++.++.-|-.++-.+...   .
T Consensus      1013 ~~s~~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~ 1092 (1661)
T 2b39_A         1013 NMIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLI 1092 (1661)
T ss_dssp             GGGGTHHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS
T ss_pred             hhhhcccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcc
Confidence            35666666666665555543111111122334       4445578999999998776555553333333333222   2


Q ss_pred             cCCHHHHHHHHHHHHh-ccCCCCCcCCCC--------C-----CCCchhHhHHHHHHHHHhccCC-------cccHHHHH
Q 018000          187 ILDDELLQNVGNYILS-CQTYEGGIAGEP--------G-----SEAHGGYTFCGLAAMILINEAD-------RLDLDALI  245 (362)
Q Consensus       187 ~~~~~~~~~~~~yI~s-cQ~~dGGFg~~p--------g-----~esh~~~TfcALaaL~llg~~~-------~~d~~~l~  245 (362)
                      ..+...+.++.+||.+ .|..+|.|....        |     .+++...|.+++.+|.-.+...       ...+.+++
T Consensus      1093 ~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~ 1172 (1661)
T 2b39_A         1093 AIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAG 1172 (1661)
T ss_dssp             CCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHH
Confidence            3467788999999995 999999996421        1     1235666778888887765431       11356788


Q ss_pred             HHHHhC
Q 018000          246 GWVVFR  251 (362)
Q Consensus       246 ~WL~~r  251 (362)
                      +||..+
T Consensus      1173 ~yL~~~ 1178 (1661)
T 2b39_A         1173 DFLENH 1178 (1661)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            888654

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=95.66  E-value=0.013  Score=58.04  Aligned_cols=62  Identities=23%  Similarity=0.154  Sum_probs=51.4

Q ss_pred             hHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCcee
Q 018000           93 LEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFR  163 (362)
Q Consensus        93 ~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~  163 (362)
                      ..++++.+|.+.|.+||+||       ++.+|--|+++|...+.. .-..-+..+.++||.+ |.+||+|.
T Consensus       184 ai~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~-~~~~W~c~~al~~l~~-q~~~G~F~  245 (399)
T 2pmv_A          184 VLKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEP-SKKEWNCKKTTDMILN-EIKQGKFH  245 (399)
T ss_dssp             HHHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSC-CSSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred             HHHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCC-ccccccHHHHHHHHHH-HhhCCCcC
Confidence            35667888999999999997       589999999999999864 2223367899999999 88999996

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=95.24  E-value=0.0032  Score=72.61  Aligned_cols=137  Identities=12%  Similarity=0.102  Sum_probs=0.0

Q ss_pred             CCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHH-------HHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHh--
Q 018000          115 PGQMPHLATTYAAVNALISLGGEKSLPSINRSKV-------YTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL--  185 (362)
Q Consensus       115 pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~-------~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL--  185 (362)
                      ....++++++..++.-|...+....+..-.++++       +.-+++.|++||||....+++.++.-|-.++-++...  
T Consensus       995 EQnms~~~P~v~v~~yL~~t~q~~~~~~e~~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~ 1074 (1642)
T 3prx_B          995 EQNMIRMAAPVIATYYLDTTEQWETLGINRRTEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAK 1074 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHh
Confidence            3446777777777666655443111111112333       4455568899999998755444443222222222211  


Q ss_pred             -cc-CCHHHHHHHHHHHHh-ccCCCCCcCCCC------------CCCCchhHhHHHHHHHHHhccCC-------cccHHH
Q 018000          186 -NI-LDDELLQNVGNYILS-CQTYEGGIAGEP------------GSEAHGGYTFCGLAAMILINEAD-------RLDLDA  243 (362)
Q Consensus       186 -~~-~~~~~~~~~~~yI~s-cQ~~dGGFg~~p------------g~esh~~~TfcALaaL~llg~~~-------~~d~~~  243 (362)
                       .. .++..+.++++||.+ +|..||.|....            +.+.+...|.+.+.||.-.+...       ...+.+
T Consensus      1075 ~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~ 1154 (1642)
T 3prx_B         1075 MVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKK 1154 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHH
Confidence             12 455678899999998 999999996431            12345556777777765544320       123577


Q ss_pred             HHHHHHhC
Q 018000          244 LIGWVVFR  251 (362)
Q Consensus       244 l~~WL~~r  251 (362)
                      ++.||.++
T Consensus      1155 a~~~L~~~ 1162 (1642)
T 3prx_B         1155 ATNYLLKK 1162 (1642)
T ss_dssp             --------
T ss_pred             HHHHHHHh
Confidence            88888754

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=94.97  E-value=0.043  Score=63.45  Aligned_cols=83  Identities=10%  Similarity=0.043  Sum_probs=53.1

Q ss_pred             HHhcCCCCCceeeccCCCcccchHHHHHHHHHHh---ccCCHHHHHHHHHHHHh-ccCCCCCcCCCCC---C--------
Q 018000          152 LKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL---NILDDELLQNVGNYILS-CQTYEGGIAGEPG---S--------  216 (362)
Q Consensus       152 L~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL---~~~~~~~~~~~~~yI~s-cQ~~dGGFg~~pg---~--------  216 (362)
                      +++.|++||||....++..++.-|-.++-.+...   ...++..+.++.+||.+ .|..+|.|.....   .        
T Consensus      1056 ~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~ 1135 (1676)
T 3cu7_A         1056 IMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPV 1135 (1676)
T ss_dssp             GGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHH
T ss_pred             HhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCccc
Confidence            4468999999998755555654333333333322   23567788999999999 9999999864211   0        


Q ss_pred             ---CCchhHhHHHHHHHHHhc
Q 018000          217 ---EAHGGYTFCGLAAMILIN  234 (362)
Q Consensus       217 ---esh~~~TfcALaaL~llg  234 (362)
                         +++...|.+++.+|.-.+
T Consensus      1136 ~~~~~~~~ltAyvl~aL~~~~ 1156 (1676)
T 3cu7_A         1136 EARENSLYLTAFTVIGIRKAF 1156 (1676)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTG
T ss_pred             ccccCccccHHHHHHHHHhcc
Confidence               013345666777776554

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=89.64  E-value=0.42  Score=50.78  Aligned_cols=56  Identities=23%  Similarity=0.191  Sum_probs=41.1

Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCC--chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh
Q 018000           95 DRTIEFLSRCQDPNGGYGGGPGQMP--HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC  154 (362)
Q Consensus        95 ~~~i~~l~~~Q~~dGGFgg~pg~~s--hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s  154 (362)
                      ...++||+..|.+||+||...+...  -+.+|.+||.||..-+-    ..-..++.+.||.+
T Consensus        53 p~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~----~~~~i~rGl~fl~~  110 (727)
T 3pya_A           53 PSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNL----FPHQCNKGITFFRE  110 (727)
T ss_dssp             HHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHH
Confidence            5789999999999999996422222  47899999999988542    22234577788875

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=89.59  E-value=0.42  Score=51.04  Aligned_cols=57  Identities=16%  Similarity=0.074  Sum_probs=42.0

Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCC--chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh
Q 018000           94 EDRTIEFLSRCQDPNGGYGGGPGQMP--HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC  154 (362)
Q Consensus        94 ~~~~i~~l~~~Q~~dGGFgg~pg~~s--hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s  154 (362)
                      -...++||+..|.+||+||...+...  -+.+|.+||.||..-+.    ..-..++.+.||.+
T Consensus        55 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~----~~~~i~~Gl~fl~~  113 (764)
T 3p5p_A           55 FPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKT----GHSQVQQGAEFIAE  113 (764)
T ss_dssp             CHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHH
Confidence            45789999999999999996432222  48899999999988653    22234677888875

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=89.28  E-value=0.45  Score=50.98  Aligned_cols=56  Identities=20%  Similarity=0.265  Sum_probs=41.7

Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCC--chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh
Q 018000           95 DRTIEFLSRCQDPNGGYGGGPGQMP--HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC  154 (362)
Q Consensus        95 ~~~i~~l~~~Q~~dGGFgg~pg~~s--hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s  154 (362)
                      ...++||+..|.+||+||.......  -+.+|.+||.||...+.    ..-..++.+.||.+
T Consensus        77 p~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~----~~~~i~~Gl~fl~~  134 (785)
T 3s9v_A           77 PETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRT----GETQVQKGIEFFRT  134 (785)
T ss_dssp             HHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHccc----CHHHHHHHHHHHHH
Confidence            5789999999999999997532222  38899999999998653    22234577788875

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=89.14  E-value=0.48  Score=50.99  Aligned_cols=56  Identities=18%  Similarity=0.280  Sum_probs=41.9

Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCC--chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh
Q 018000           95 DRTIEFLSRCQDPNGGYGGGPGQMP--HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC  154 (362)
Q Consensus        95 ~~~i~~l~~~Q~~dGGFgg~pg~~s--hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s  154 (362)
                      ...++||+..|.+||+||.......  -+.+|.+||.||...+.    ..-..++.+.||.+
T Consensus       104 p~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~----~~~~i~~Gl~fl~~  161 (817)
T 3sdr_A          104 PQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNV----GDLQVEQGIEFIKS  161 (817)
T ss_dssp             HHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHH
Confidence            5789999999999999996433222  48899999999988653    22234577888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	362
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	1e-108
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	2e-14
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	3e-86
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	1e-18
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	2e-18
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	1e-04
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	6e-81
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	7e-24
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	9e-22
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	1e-05
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	5e-04
d2sqca1	352	a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla	1e-04
d1w6ka2	279	a.102.4.2 (A:100-378) Lanosterol synthase {Human (	0.002

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  320 bits (820), Expect = e-108
 Identities = 148/350 (42%), Positives = 194/350 (55%), Gaps = 48/350 (13%)

Query: 10  TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
           TVT  EQ+ V   +     ++++         + LQR+ H  YL RGL+QL  ++  LDA
Sbjct: 22  TVTSIEQAKVEEKIQ---EVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDA 78

Query: 70  NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVN 129
           +RPW+CYWILHS+ LL E +   +     +FL  CQ P GG+GGGPGQ PHLA TYAAVN
Sbjct: 79  SRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVN 138

Query: 130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
           AL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ NI+ 
Sbjct: 139 ALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIIT 198

Query: 190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
            +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++     L+L +L+ WV 
Sbjct: 199 PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVT 258

Query: 250 FRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQ 308
            RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R     G+    +             
Sbjct: 259 SRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH----------- 307

Query: 309 TTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 358
                                             +FH  ALQ Y+L+C Q
Sbjct: 308 ---------------------------------WMFHQQALQEYILMCCQ 324

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (175), Expect = 2e-14
 Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 26/211 (12%)

Query: 44  LQRKNHVEYLLRGLQQLGPSFCSLDA-NRPWICYWILHSMALLGEFVDADLEDRTIEFLS 102
           + R+  ++YL    Q  G     +         Y      +L       DL + T E+++
Sbjct: 152 INREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII-TPDLFEGTAEWIA 210

Query: 103 RCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFL-KCMKDPSGA 161
           RCQ+  GG GG PG   H   T+  + AL+ L       S+N   +  ++        G 
Sbjct: 211 RCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK---RERSLNLKSLLQWVTSRQMRFEGG 267

Query: 162 FRMHDAGEIDVRACYTAISVASILN----------------ILDDELLQNVGNYILSC-Q 204
           F+      +D    +    +  +L+                +   + LQ    YIL C Q
Sbjct: 268 FQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQE---YILMCCQ 324

Query: 205 TYEGGIAGEPGSEAHGGYTFCGLAAMILINE 235
              GG+  +PG      +T   L+ + +   
Sbjct: 325 CPAGGLLDKPGKSRDFYHTCYCLSGLSIAQH 355

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  262 bits (671), Expect = 3e-86
 Identities = 74/277 (26%), Positives = 124/277 (44%), Gaps = 36/277 (12%)

Query: 42  MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFL 101
           ++  R  HV +  R LQ L   + SL+ +R  I ++ L  + +L    D   +D  IE++
Sbjct: 1   LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSL-DVVNKDDIIEWI 59

Query: 102 SRCQDP--------------------------NGGYGGGPGQMPHLATTYAAVNALISLG 135
              Q                                   P    H+A TY  ++ LI LG
Sbjct: 60  YSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG 119

Query: 136 GEKSLPSINRSKVYTFLKCMKDPSGAFR-MHDAGEIDVRACYTAISVASILNILDDELLQ 194
            +  L  +++      L+ ++   G+F  + +  E D+R  Y A  +  +LN      ++
Sbjct: 120 DD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMK 177

Query: 195 NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL----DLDALIGWVVF 250
              +YI    +Y+ G+A   G E+HGG TFCG+A++ L+ + + +    +L+ +  W + 
Sbjct: 178 KAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM 237

Query: 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 287
           RQ  + G+ GR NK VD CYSFW G    LL+ F   
Sbjct: 238 RQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYT 272

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.5 bits (206), Expect = 1e-18
 Identities = 41/202 (20%), Positives = 76/202 (37%), Gaps = 14/202 (6%)

Query: 42  MELQRKNHVEYLLRGLQQLGPSFCSLDANRP---WICYWILHSMALLGEFVDADLEDRTI 98
           +    K      LR LQ    SFC++           Y       +L  +   D++ + I
Sbjct: 122 LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMK-KAI 180

Query: 99  EFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGG-EKSLPSINRSKVYTFLKCMKD 157
            ++ R    + G   G G   H  +T+  + +L  +G  E+       +++  +   M+ 
Sbjct: 181 SYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWC-IMRQ 239

Query: 158 PSGAFRMHDAGEIDVRACYTAISVASILNIL---DDELLQNVGNYILSCQTYE-GGIAGE 213
            +G +       +D    +   +   +L I    + E  +N   YILS Q    GG A  
Sbjct: 240 QNG-YHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRN---YILSTQDRLVGGFAKW 295

Query: 214 PGSEAHGGYTFCGLAAMILINE 235
           P S     + + G+  + L+ E
Sbjct: 296 PDSHPDALHAYFGICGLSLMEE 317

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.1 bits (205), Expect = 2e-18
 Identities = 29/201 (14%), Positives = 68/201 (33%), Gaps = 7/201 (3%)

Query: 76  YWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGP-GQMPHLATTYAAVNALISL 134
           Y  L  + +LG+ +    ++  +  L   Q  +G +   P G    +   Y A      L
Sbjct: 109 YTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYML 168

Query: 135 GGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQ 194
                   ++  K  ++++               E    + +  I+   ++  L++   +
Sbjct: 169 NN---WSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSE 225

Query: 195 NVGNYILS--CQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVF-R 251
              N I        + G  G P       Y+F   A + L+      + +    +++  +
Sbjct: 226 KELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQ 285

Query: 252 QGVEGGFQGRTNKLVDGCYSF 272
             + GGF    +   D  +++
Sbjct: 286 DRLVGGFAKWPDSHPDALHAY 306

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 43  ELQRKNHVEYLLRGLQQLGP-SFCSLDANRPWICY--WILHSMALLGEFVDADLEDRTIE 99
           E+  +  +  + R         +          CY  W+  ++ LL  F   + E +   
Sbjct: 221 EVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFE-KNRN 279

Query: 100 F-LSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSIN 144
           + LS      GG+   P   P     Y  +  L SL  E  +  ++
Sbjct: 280 YILSTQDRLVGGFAKWPDSHPDALHAYFGICGL-SLMEESGICKVH 324

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  247 bits (633), Expect = 6e-81
 Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 5/246 (2%)

Query: 43  ELQRKNHVEYLLRGLQQLGPS-FCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFL 101
            L  + H +Y+     +     +C  +  R    YW L  M L+G+    + ++  + F+
Sbjct: 11  TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMN-KEEILVFI 69

Query: 102 SRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGA 161
             CQ   GG     G  PHL  T +AV  L       S+  IN  KV  +++ ++   G+
Sbjct: 70  KSCQHECGGVSASIGHDPHLLYTLSAVQILTLY---DSIHVINVDKVVAYVQSLQKEDGS 126

Query: 162 FRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGG 221
           F     GEID R  + A++  ++L  LD   ++    ++LSC  ++GG    PGSE+H G
Sbjct: 127 FAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAG 186

Query: 222 YTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL 281
             +C    + + ++  +++ D L  W+  RQ   GG  GR  KL D CYS+W      ++
Sbjct: 187 QIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKII 246

Query: 282 RRFHSI 287
            R H I
Sbjct: 247 GRLHWI 252

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.1 bits (244), Expect = 7e-24
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 6/232 (2%)

Query: 43  ELQRKNHVEYLLRGLQQLGP-SFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFL 101
            + ++  + ++     + G  S               +  + L       +  D+ + ++
Sbjct: 59  RMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVIN-VDKVVAYV 117

Query: 102 SRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGA 161
              Q  +G + G          ++ AV  L  LG    L +IN  K   F+    +  G 
Sbjct: 118 QSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGK---LDAINVEKAIEFVLSCMNFDGG 174

Query: 162 FRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGG 221
           F      E      Y      +I + L       +G ++   Q   GG+ G P       
Sbjct: 175 FGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVC 234

Query: 222 YTFCGLAAMILINEADRLDLDALIGWVVF-RQGVEGGFQGRTNKLVDGCYSF 272
           Y++  LA++ +I     +D + L  +++  +    GGF  R   +VD  ++ 
Sbjct: 235 YSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTL 286

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.4 bits (229), Expect = 9e-22
 Identities = 49/218 (22%), Positives = 87/218 (39%), Gaps = 7/218 (3%)

Query: 21  NDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSF--CSLDANRPWICYWI 78
                L +  + V  +     + +   + V   ++ LQ+   SF             +  
Sbjct: 84  GHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA 143

Query: 79  LHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEK 138
           + ++ALLG+    ++E + IEF+  C + +GG+G  PG   H    Y     L       
Sbjct: 144 VATLALLGKLDAINVE-KAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITS--- 199

Query: 139 SLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 198
            L  +N   +  +L   + PSG          DV   +  ++   I+  L     + + +
Sbjct: 200 QLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRS 259

Query: 199 YILSCQTYE-GGIAGEPGSEAHGGYTFCGLAAMILINE 235
           +IL+CQ  E GG A  PG      +T  G+A + L+ E
Sbjct: 260 FILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGE 297

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 6/122 (4%)

Query: 28  HIYATVPPIAQTLMMELQRKNHVEYLLRGL---QQLGPSFCSLDANRPWICY--WILHSM 82
           H            +     + + + L   L   Q             P +CY  W+L S+
Sbjct: 184 HAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASL 243

Query: 83  ALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPS 142
            ++G     D E      L+   +  GG+   PG M     T   +  L SL GE+ +  
Sbjct: 244 KIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGL-SLLGEEQIKP 302

Query: 143 IN 144
           ++
Sbjct: 303 VS 304

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 15/93 (16%), Positives = 31/93 (33%)

Query: 198 NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGG 257
           +YI S  + +                + GL  M L+ +  R++ + ++ ++   Q   GG
Sbjct: 19  DYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGG 78

Query: 258 FQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGE 290
                       Y+     +  L    H I  +
Sbjct: 79  VSASIGHDPHLLYTLSAVQILTLYDSIHVINVD 111

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 38/214 (17%), Positives = 68/214 (31%), Gaps = 33/214 (15%)

Query: 75  CYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYG-------------------GGP 115
             W L+++ L  E    D   +   ++   Q  NGG+G                   G  
Sbjct: 103 VVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEV 162

Query: 116 GQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRAC 175
              P    T   +    S G + +   I R+  Y   +   D S   R    G   +   
Sbjct: 163 TDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRW---GVNYLYGT 219

Query: 176 YTAISV-ASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGY----------TF 224
              +S   ++     +  +Q   +++   Q  +GG   +  S     Y          T 
Sbjct: 220 GAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTA 279

Query: 225 CGLAAMILINEADRLDLDALIGWVVFRQGVEGGF 258
             L A+I    A+       + ++V  Q  +GG+
Sbjct: 280 WALMALIAGGRAESEAARRGVQYLVETQRPDGGW 313

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 13/64 (20%), Positives = 25/64 (39%)

Query: 84  LLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSI 143
           +    + A   +  + +L   Q P+GG+G        +  T     +L  LG     P +
Sbjct: 15  VARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDL 74

Query: 144 NRSK 147
            R++
Sbjct: 75  VRAR 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	362
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	100.0
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	100.0
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	100.0
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	100.0
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	99.97
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	99.97
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.82
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.77
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.72
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.43
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.37
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	98.41
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	98.23
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	98.2
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	98.08
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	97.83
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	97.78
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	97.74
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	97.56
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	97.21
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	97.17
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	96.05

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-87  Score=666.78  Aligned_cols=311  Identities=48%  Similarity=0.868  Sum_probs=288.7

Q ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHH
Q 018000            3 PDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSM   82 (362)
Q Consensus         3 ~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL   82 (362)
                      .+||+++|.||++|.+||+.|.++|+.+...   .....+.|.|++|++||+++|+.||.+|+++|+||||++||+|++|
T Consensus        15 ~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~---~~~~~~~L~r~~H~~y~~~~L~~lp~~~~~lD~~r~~l~yw~l~~L   91 (401)
T d2h6fb1          15 LQDDSVETVTSIEQAKVEEKIQEVFSSYKFN---HLVPRLVLQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSL   91 (401)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHHHHHHTTCBT---TBCCCCCCCHHHHHHHHHHHTTEECGGGGGGTTCHHHHHHHHHHHH
T ss_pred             ccCCCCccCCHHHHHHHHHHHHHHHHHhhhh---cCCccccccHHHHHHHHHHHHHhCCHHhhccccccHHHHHHHHHHH
Confidence            5789999999999999999999999877532   1222367999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCce
Q 018000           83 ALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAF  162 (362)
Q Consensus        83 ~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF  162 (362)
                      +|||.+++++.++++++||.+||+++|||+++|++.||+++||+||++|.++|.+++++.+||+++++||.++|+|||||
T Consensus        92 ~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~fL~slQ~pDGsF  171 (401)
T d2h6fb1          92 ELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSF  171 (401)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCB
T ss_pred             HHcCCCccHHHHHHHHHHHHHHcCCCCCcCCCCCCCcchHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHhcCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999877788999999999999999999999


Q ss_pred             eeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHH
Q 018000          163 RMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLD  242 (362)
Q Consensus       163 ~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~  242 (362)
                      .+++++|.|+|++|||+++++||++.++++++++++||++||++|||||..|+.|||++|||||||+|++|++.+.+|++
T Consensus       172 ~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~  251 (401)
T d2h6fb1         172 LMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLK  251 (401)
T ss_dssp             BSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHH
T ss_pred             cccccCCcccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCC-CCCcccCCCCCCCcccccchHHHHHHHHhhhhhccCCCCCCcccCCcccccCCCccccCCCCCCCCCC
Q 018000          243 ALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGS  321 (362)
Q Consensus       243 ~l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (362)
                      ++++||++||+ .+|||+||+||+||+|||||++|+|+||++.........                         ... 
T Consensus       252 ~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~-------------------------~~~-  305 (401)
T d2h6fb1         252 SLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPA-------------------------LSM-  305 (401)
T ss_dssp             HHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTT-------------------------CCS-
T ss_pred             HHHHHHHHcCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHhhcccccc-------------------------ccc-
Confidence            99999999998 699999999999999999999999999999887543211                         000 


Q ss_pred             CcccccCCCcccccccccCcccccHHHHHHHHHHccCCc
Q 018000          322 SDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQ  360 (362)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~yil~c~q~~  360 (362)
                                        ..+|||+++||+|||.|||.+
T Consensus       306 ------------------~~~l~d~~~l~~yiL~~~Q~~  326 (401)
T d2h6fb1         306 ------------------SHWMFHQQALQEYILMCCQCP  326 (401)
T ss_dssp             ------------------SCCSSCHHHHHHHHHHHSBCT
T ss_pred             ------------------cccccCHHHHHHHHHHHcCCC
Confidence                              127999999999999999976

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3e-71  Score=540.44  Aligned_cols=257  Identities=30%  Similarity=0.551  Sum_probs=236.8

Q ss_pred             hhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCC-------------
Q 018000           42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPN-------------  108 (362)
Q Consensus        42 ~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~d-------------  108 (362)
                      ++|.|+||++|++++++.+|.+|+++|++|+|++||+|++|+|||. +++..++++++||++||.+.             
T Consensus         1 ~~f~~~kH~~y~~~~l~~lp~~~~~~D~~R~~~~Yw~l~sL~lL~~-l~~~~~~~~i~~l~~~q~~~~~~~~~~~~~gf~   79 (346)
T d1n4qb_           1 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFR   79 (346)
T ss_dssp             CCCCHHHHHHHHHHHHHEECGGGGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHTTEECCCTTCTTGGGCEEC
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHHcCC-CccccHHHHHHHHHHHhccccccccCccccCcc
Confidence            3689999999999999999999999999999999999999999996 66778999999999999532             


Q ss_pred             -------------CCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceee-ccCCCcccch
Q 018000          109 -------------GGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM-HDAGEIDVRA  174 (362)
Q Consensus       109 -------------GGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~-~~~ge~D~r~  174 (362)
                                   |+|++.+++.+|+++||+||++|.+++++  ++.+||+++++||.++|++||||.. +.++|.|+|+
T Consensus        80 gs~~~~~~~~~~~~~~~~~~~~~~hl~~Ty~Al~~L~~lg~~--~~~idr~~i~~~l~~lq~~DGsF~~~~~gge~D~R~  157 (346)
T d1n4qb_          80 GSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRF  157 (346)
T ss_dssp             SSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCC--STTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHH
T ss_pred             CcccccCCCCcccCCCCCCccchhHHHHHHHHHHHHHHhchH--hhHhHHHHHHHHHHHhcCCCCCccccCCCCcchHHH
Confidence                         34555677899999999999999999964  8899999999999999999999975 5678999999


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcc----cHHHHHHHHHh
Q 018000          175 CYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL----DLDALIGWVVF  250 (362)
Q Consensus       175 ~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~----d~~~l~~WL~~  250 (362)
                      ||||++++++|+..++++++++++||++||++|||||..|+.|||++|||||||+|+++++.+.+    |++++++||++
T Consensus       158 tY~A~~i~~lL~~~~~~~~~~~~~~I~scq~~DGGfg~~p~~EsHgg~TfCavasL~ll~~~~~~~~~~~~~~l~~WL~~  237 (346)
T d1n4qb_         158 VYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM  237 (346)
T ss_dssp             HHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCccccHHHHHHHHHHhcCcCCCccCCCCCCccHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999987555    78999999999


Q ss_pred             CCCCCCcccCCCCCCCcccccchHHHHHHHHhhhhhccCCCCCCcccCCcccccCCCccccCCCCCCCCCCCcccccCCC
Q 018000          251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGD  330 (362)
Q Consensus       251 rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (362)
                      ||  +|||+|||||+||+|||||++++|.||+..                                              
T Consensus       238 Rq--~gGf~GR~nK~~D~CYs~W~~~~l~iL~~~----------------------------------------------  269 (346)
T d1n4qb_         238 RQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIF----------------------------------------------  269 (346)
T ss_dssp             TB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCG----------------------------------------------
T ss_pred             cc--cCCcCCCCCCccchHHHHHHHHHHHHcccc----------------------------------------------
Confidence            99  799999999999999999999999998632                                              


Q ss_pred             cccccccccCcccccHHHHHHHHHHccCCc
Q 018000          331 EHCHFQHREREPLFHSIALQRYLLLCSQVQ  360 (362)
Q Consensus       331 ~~~~~~~~~~~~l~~~~~l~~yil~c~q~~  360 (362)
                                 .++|+++|++|||.|||.+
T Consensus       270 -----------~~~d~~~l~~yil~~~q~~  288 (346)
T d1n4qb_         270 -----------QYTNFEKNRNYILSTQDRL  288 (346)
T ss_dssp             -----------GGSCHHHHHHHHHTTBCTT
T ss_pred             -----------cccCHHHHHHHHHHHcCCC
Confidence                       3689999999999999964

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2e-68  Score=518.51  Aligned_cols=238  Identities=29%  Similarity=0.523  Sum_probs=227.9

Q ss_pred             hhhhHHHHHHHHHHhcc-CCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000           42 MELQRKNHVEYLLRGLQ-QLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH  120 (362)
Q Consensus        42 ~~l~r~~H~~yl~~~l~-~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh  120 (362)
                      .+|.+++|++||++++. .+|..|...|++|+|++||+|++|++||. +++.+++++++||.+||+++|||++++++.+|
T Consensus        10 ~~l~~~~H~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~sL~lLg~-l~~~~~~~~i~~L~s~Q~~dGGf~g~~~~~~~   88 (325)
T d3dssb1          10 DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPH   88 (325)
T ss_dssp             CSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBC
T ss_pred             hHHHHHHHHHHHHHhcccCCCccceehhhhHHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhcCCCCCcCCCCCCccc
Confidence            36999999999999874 68889999999999999999999999997 67788999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018000          121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI  200 (362)
Q Consensus       121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI  200 (362)
                      +++||+|+.+|.+++.   ++.+||+++++||+++|+|||||.++++++.|+|+||||++++++++..++++++++++||
T Consensus        89 l~~T~~al~~L~l~~~---~~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r~ty~Al~~l~ll~~~~~~~~~~~~~~i  165 (325)
T d3dssb1          89 LLYTLSAVQILTLYDS---IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFV  165 (325)
T ss_dssp             HHHHHHHHHHHHHTTC---GGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcc---ccccCHHHHHHHHHHhhCcCCCCccCCCCCccHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Confidence            9999999999999875   5789999999999999999999999999999999999999999999988888999999999


Q ss_pred             HhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHHH
Q 018000          201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFAL  280 (362)
Q Consensus       201 ~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~l  280 (362)
                      ++||++|||||..|+.|+|+++||||||+|++++..+.++.+++++||++||.++|||+||+||++|+|||||++++|.+
T Consensus       166 ~scQn~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~~~GGf~GR~~K~~D~cys~W~~~~l~~  245 (325)
T d3dssb1         166 LSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKI  245 (325)
T ss_dssp             HTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHH
T ss_pred             HHhcCCcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             Hhh
Q 018000          281 LRR  283 (362)
Q Consensus       281 l~~  283 (362)
                      |+.
T Consensus       246 L~~  248 (325)
T d3dssb1         246 IGR  248 (325)
T ss_dssp             TTC
T ss_pred             cCc
Confidence            964

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.5e-34  Score=274.97  Aligned_cols=236  Identities=18%  Similarity=0.263  Sum_probs=216.7

Q ss_pred             hhhHHHHHHHHHHhccCCCCCcee--ccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000           43 ELQRKNHVEYLLRGLQQLGPSFCS--LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH  120 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~~l~~~~~~--lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh  120 (362)
                      ..+|++-++||.++.. ..++|..  .+.++...+|+++.+|.+++. .+..+++++++||+++|++||||.+.++..++
T Consensus        59 ~~~~~~~i~~L~s~Q~-~dGGf~g~~~~~~~l~~T~~al~~L~l~~~-~~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D  136 (325)
T d3dssb1          59 RMNKEEILVFIKSCQH-ECGGVSASIGHDPHLLYTLSAVQILTLYDS-IHVINVDKVVAYVQSLQKEDGSFAGDIWGEID  136 (325)
T ss_dssp             GSCHHHHHHHHHHTBC-TTSCBBSSTTSCBCHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBC
T ss_pred             hHHHHHHHHHHHHhcC-CCCCcCCCCCCcccHHHHHHHHHHHHhhcc-ccccCHHHHHHHHHHhhCcCCCCccCCCCCcc
Confidence            4789999999998764 5778875  345678999999999999886 55668999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018000          121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI  200 (362)
Q Consensus       121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI  200 (362)
                      +..||+|+.++.+++.   .+.++.+++++||+++|+.||||...++.|++...||||++++.+++.++..+.+++++|+
T Consensus       137 ~r~ty~Al~~l~ll~~---~~~~~~~~~~~~i~scQn~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL  213 (325)
T d3dssb1         137 TRFSFCAVATLALLGK---LDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWL  213 (325)
T ss_dssp             HHHHHHHHHHHHHHTC---GGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC---CchhhHHHHHHHHHHhcCCcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHH
Confidence            9999999999999985   4667889999999999999999999999999999999999999999988777889999999


Q ss_pred             HhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCC-CCCcccCCCCCCCcccccchHHHHHH
Q 018000          201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFA  279 (362)
Q Consensus       201 ~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~l~  279 (362)
                      .+.|..+|||.++|+..++.-|||+++++|.+|+..+.+|.+++.+||...|. ..|||+.+++|.+|..+||..++.|+
T Consensus       214 ~~rQ~~~GGf~GR~~K~~D~cys~W~~~~l~~L~~~~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~y~l~gLs  293 (325)
T d3dssb1         214 CERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLS  293 (325)
T ss_dssp             HTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHH
T ss_pred             HHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCccccccHHHHHHHHHHHcCCCCCCcCCCCCCCCChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999889999999999988865 78999999999999999999999999


Q ss_pred             HHhh
Q 018000          280 LLRR  283 (362)
Q Consensus       280 ll~~  283 (362)
                      |++.
T Consensus       294 l~~~  297 (325)
T d3dssb1         294 LLGE  297 (325)
T ss_dssp             HTTC
T ss_pred             HCCC
Confidence            9874

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=3.4e-31  Score=257.00  Aligned_cols=235  Identities=14%  Similarity=0.230  Sum_probs=208.2

Q ss_pred             hhhHHHHHHHHHHhccCCCCC---------c-------------------eeccCChhHHHHHHHHHHHHhCCCCCHHhH
Q 018000           43 ELQRKNHVEYLLRGLQQLGPS---------F-------------------CSLDANRPWICYWILHSMALLGEFVDADLE   94 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~~l~~~---------~-------------------~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~   94 (362)
                      ...|++.++|+.+++.. |+.         |                   ...|...+-.+|+++.+|.+|+.+++..++
T Consensus        49 ~~~~~~~i~~l~~~q~~-~~~~~~~~~~~gf~gs~~~~~~~~~~~~~~~~~~~~~~hl~~Ty~Al~~L~~lg~~~~~idr  127 (346)
T d1n4qb_          49 VVNKDDIIEWIYSLQVL-PTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDK  127 (346)
T ss_dssp             GSCHHHHHHHHHTTEEC-CCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCH
T ss_pred             cccHHHHHHHHHHHhcc-ccccccCccccCccCcccccCCCCcccCCCCCCccchhHHHHHHHHHHHHHHhchHhhHhHH
Confidence            35789999999987631 111         1                   112445788999999999999987877789


Q ss_pred             HHHHHHHhhccCCCCCCCCCC-CCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccc
Q 018000           95 DRTIEFLSRCQDPNGGYGGGP-GQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVR  173 (362)
Q Consensus        95 ~~~i~~l~~~Q~~dGGFgg~p-g~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r  173 (362)
                      +++.+||.+||++||||.+.+ +.++++-.||+|++++.+|+.   ++.+|.+++++||.++|+.||||...++.|++.-
T Consensus       128 ~~i~~~l~~lq~~DGsF~~~~~gge~D~R~tY~A~~i~~lL~~---~~~~~~~~~~~~I~scq~~DGGfg~~p~~EsHgg  204 (346)
T d1n4qb_         128 EACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNN---WSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGG  204 (346)
T ss_dssp             HHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTC---GGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHH
T ss_pred             HHHHHHHHHhcCCCCCccccCCCCcchHHHHHHHHHHHHHhCC---CccccHHHHHHHHHHhcCcCCCccCCCCCCccHH
Confidence            999999999999999997654 679999999999999999985   5778899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccC----CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHH
Q 018000          174 ACYTAISVASILNIL----DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV  249 (362)
Q Consensus       174 ~~Y~al~~~~LL~~~----~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~  249 (362)
                      .||||++++.+|+.+    ...+++++++||...|  +|||.++|+..+|.-|+||..++|.+|+..+.+|.+++.+||.
T Consensus       205 ~TfCavasL~ll~~~~~~~~~~~~~~l~~WL~~Rq--~gGf~GR~nK~~D~CYs~W~~~~l~iL~~~~~~d~~~l~~yil  282 (346)
T d1n4qb_         205 STFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYIL  282 (346)
T ss_dssp             HHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhhHHHHHHHHHhcc--cCCcCCCCCCccchHHHHHHHHHHHHcccccccCHHHHHHHHH
Confidence            999999999999864    3447899999998777  7999999999999999999999999999988999999999998


Q ss_pred             hCCC-CCCcccCCCCCCCcccccchHHHHHHHHhh
Q 018000          250 FRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRR  283 (362)
Q Consensus       250 ~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~  283 (362)
                      +.|. ..|||+.+|.+.+|..+||..++.|++++.
T Consensus       283 ~~~q~~~GGf~~~p~~~pD~~HT~~~l~gLsl~~~  317 (346)
T d1n4qb_         283 STQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEE  317 (346)
T ss_dssp             TTBCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTC
T ss_pred             HHcCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCC
Confidence            8865 789999999999999999999999999874

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.7e-31  Score=259.89  Aligned_cols=238  Identities=15%  Similarity=0.167  Sum_probs=212.7

Q ss_pred             hhhHHHHHHHHHHhccCCCCCceec--cCChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHHHhhccCCCCCCCCCCCCC
Q 018000           43 ELQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEF--VDADLEDRTIEFLSRCQDPNGGYGGGPGQM  118 (362)
Q Consensus        43 ~l~r~~H~~yl~~~l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~  118 (362)
                      +..+++.++||.++.. ..|+|...  +...+..+|+++.+|.+||..  ++..+++++++||.+||++||||...++.+
T Consensus       100 ~~~~~~ii~~l~~~q~-~~GGF~g~pg~~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~fL~slQ~pDGsF~~~~~ge  178 (401)
T d2h6fb1         100 QIVATDVCQFLELCQS-PEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGE  178 (401)
T ss_dssp             HHHHHHHHHHHHHHBC-TTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCC
T ss_pred             HHHHHHHHHHHHHHcC-CCCCcCCCCCCCcchHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHhcCCCCCccccccCC
Confidence            4678889999998765 46788753  456889999999999999973  334568899999999999999999998999


Q ss_pred             CchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHH
Q 018000          119 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN  198 (362)
Q Consensus       119 shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~  198 (362)
                      +++-.||+|+.++.+++.   +..++.+++++||.++|+.||||...++.|++.-.||||++++.+|+.+...++++++.
T Consensus       179 ~D~R~~Y~Av~i~~lL~~---~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~~l~~  255 (401)
T d2h6fb1         179 VDVRSAYCAASVASLTNI---ITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQ  255 (401)
T ss_dssp             BSHHHHHHHHHHHHHTTC---CCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHH
T ss_pred             cccchhHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHHHHHH
Confidence            999999999999999985   45667889999999999999999999999999999999999999999887778999999


Q ss_pred             HHHhccCC-CCCcCCCCCCCCchhHhHHHHHHHHHhccC-------------CcccHHHHHHHHHhC-CCCCCcccCCCC
Q 018000          199 YILSCQTY-EGGIAGEPGSEAHGGYTFCGLAAMILINEA-------------DRLDLDALIGWVVFR-QGVEGGFQGRTN  263 (362)
Q Consensus       199 yI~scQ~~-dGGFg~~pg~esh~~~TfcALaaL~llg~~-------------~~~d~~~l~~WL~~r-Q~~eGGF~GR~n  263 (362)
                      |+.+.|.. +|||.++|+..+|+-|+||..++|.+|+..             ..+|.+++.+||... |.+.|||+-+|+
T Consensus       256 WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL~~~Q~~~GGf~d~Pg  335 (401)
T d2h6fb1         256 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPG  335 (401)
T ss_dssp             HHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTT
T ss_pred             HHHHcCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCC
Confidence            99999975 899999999999999999999999999752             136899999999775 669999999999


Q ss_pred             CCCcccccchHHHHHHHHhhh
Q 018000          264 KLVDGCYSFWQGGVFALLRRF  284 (362)
Q Consensus       264 KlvD~CYsfW~~a~l~ll~~~  284 (362)
                      |.+|...||..++.|++++..
T Consensus       336 ~~pD~yHT~y~L~gLSl~~~~  356 (401)
T d2h6fb1         336 KSRDFYHTCYCLSGLSIAQHF  356 (401)
T ss_dssp             SCCCHHHHHHHHHHHHHHHEE
T ss_pred             CCCCccHHHHHHHHHHhcCCc
Confidence            999999999999999999864

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.82  E-value=6.6e-19  Score=170.56  Aligned_cols=175  Identities=17%  Similarity=0.197  Sum_probs=130.6

Q ss_pred             hHHHHHHHHhhccCCCCCCCCC-C------------------CCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHH
Q 018000           93 LEDRTIEFLSRCQDPNGGYGGG-P------------------GQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLK  153 (362)
Q Consensus        93 ~~~~~i~~l~~~Q~~dGGFgg~-p------------------g~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~  153 (362)
                      ..+++++||+++||+||||+.. +                  ...+....|..++.+|...+.++. + .-.+++++||.
T Consensus       121 ai~~av~~Lls~Qn~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~T~~~l~al~~~g~~~~-~-~~I~kav~~L~  198 (352)
T d2sqca1         121 AMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDA-W-KVIRRAVEYLK  198 (352)
T ss_dssp             HHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTT-S-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCcccccccCccchhhccchhhhhhccCCCchHHHHHHHHHHHhcCCchh-h-HHHHHHHHHHH
Confidence            4667899999999999999742 1                  124667779999999888875422 1 22478999999


Q ss_pred             hcCCCCCceeeccCCCcccchHHHHHHHHHHhcc-CCHHHHHHHHHHHHhccCCCCCcCCC----------CCCCCchhH
Q 018000          154 CMKDPSGAFRMHDAGEIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGIAGE----------PGSEAHGGY  222 (362)
Q Consensus       154 s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~-~~~~~~~~~~~yI~scQ~~dGGFg~~----------pg~esh~~~  222 (362)
                      +.|+|||+|.+..+ ...+-.|+.++..+..++. ...+.++++++||+++|+.|||||..          +...++...
T Consensus       199 ~~Q~~dG~w~~~~~-~~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~~L~~~Q~~dGgWg~~~~~~~~~~~~~~~~s~~~~  277 (352)
T d2sqca1         199 REQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQ  277 (352)
T ss_dssp             HHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHH
T ss_pred             hccCCCCCccccCC-CCcchHHHHHHHHHHhcccccchHHHHHHHHHHHhccCCCCCcccCcccccCcccCCCCCCcHHH
Confidence            99999999977653 2333333444444444554 33467899999999999999999843          334578889


Q ss_pred             hHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccC-CCCC--CCcccc
Q 018000          223 TFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG-RTNK--LVDGCY  270 (362)
Q Consensus       223 TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~G-R~nK--lvD~CY  270 (362)
                      |.+||.+|...+......+++.++||+++|.++|||.- .++.  .+..||
T Consensus       278 Ta~al~aL~~a~~~~~~~i~ra~~~L~~~Q~~dG~w~~~~~~g~~f~~~~~  328 (352)
T d2sqca1         278 TAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFY  328 (352)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEE
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCCCCCCCcceecccccccce
Confidence            99999999888877665689999999999999999973 3442  466776

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.9e-18  Score=171.09  Aligned_cols=182  Identities=12%  Similarity=0.145  Sum_probs=136.2

Q ss_pred             CCCHHhHHHHHHHHhhccCCCCCCCCC---------------------CCCCCchhhhHHHHHHHHHcCCCCC---CChh
Q 018000           88 FVDADLEDRTIEFLSRCQDPNGGYGGG---------------------PGQMPHLATTYAAVNALISLGGEKS---LPSI  143 (362)
Q Consensus        88 ~~~~~~~~~~i~~l~~~Q~~dGGFgg~---------------------pg~~shl~~Ty~Av~sL~ilg~~~~---l~~i  143 (362)
                      .++++...++++||+++||+||||+..                     +-..++...|..++.+|..++....   ...+
T Consensus       193 ~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~~~  272 (448)
T d1w6ka1         193 HIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEI  272 (448)
T ss_dssp             CCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccccc
Confidence            355667889999999999999999742                     1236788899999999998864211   1112


Q ss_pred             h--HHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCC-----HHHHHHHHHHHHhccCCCCCcCCC---
Q 018000          144 N--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD-----DELLQNVGNYILSCQTYEGGIAGE---  213 (362)
Q Consensus       144 d--r~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~-----~~~~~~~~~yI~scQ~~dGGFg~~---  213 (362)
                      +  .++.++||.+.|++||||.+..+ ...+-+|.+++..+...+...     ...++++++||+++|+.||||+..   
T Consensus       273 ~~~i~ral~yL~~~Q~~DGsW~g~wg-~~~~ygT~~al~aL~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~~s  351 (448)
T d1w6ka1         273 RETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFES  351 (448)
T ss_dssp             HHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHH
T ss_pred             hHHHHHHHHHHHccCCCCCcccccCC-CcccHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCCcc
Confidence            2  36889999999999999988653 233333334444444444321     256899999999999999999853   


Q ss_pred             -------CCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCC--CCCCCcccc
Q 018000          214 -------PGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR--TNKLVDGCY  270 (362)
Q Consensus       214 -------pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR--~nKlvD~CY  270 (362)
                             ++..|+...|.+||.+|...+......+++.++||+++|.++|+|.-.  +.-.+..||
T Consensus       352 ~~~~~~~~~~~s~~~~TAwAl~aL~~ag~~~~~~v~rgv~~L~~~Q~~~G~W~~~~~~g~f~~~~~  417 (448)
T d1w6ka1         352 CEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCA  417 (448)
T ss_dssp             HHHTSCCBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEE
T ss_pred             ccCcccCCCCCCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCCCCCCCCceeeeecccce
Confidence                   466789999999999998888877777899999999999999999643  223566676

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.72  E-value=1.3e-16  Score=154.21  Aligned_cols=211  Identities=18%  Similarity=0.152  Sum_probs=145.2

Q ss_pred             HHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccC-------------CCCCCCC
Q 018000           47 KNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQD-------------PNGGYGG  113 (362)
Q Consensus        47 ~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~-------------~dGGFgg  113 (362)
                      +|-++||.+..+ .+|++..-..+-.|-+=+++.+|---|.+-+.....++++||.++|.             +.|||+.
T Consensus         9 ~rav~~L~~~q~-~dG~w~~~~~s~vwdTala~~Al~eaG~~~~~~~l~ka~~~L~~~Q~~~~gd~~~~~~~~~~Ggw~~   87 (352)
T d2sqca1           9 DRAVEYLLSCQK-DEGYWWGPLISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAF   87 (352)
T ss_dssp             HHHHHHHHHHCC-TTSCCCCCECCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCS
T ss_pred             HHHHHHHHHhcC-CCCceeCCCCCcHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCcccc
Confidence            457899988654 46777554456778888888887666764443467899999999984             2367665


Q ss_pred             C--CCCCCchhhhHHHHHHHHHcCCCCCCChhh---HHHHHHHHHhcCCCCCceeeccC---------------CC-ccc
Q 018000          114 G--PGQMPHLATTYAAVNALISLGGEKSLPSIN---RSKVYTFLKCMKDPSGAFRMHDA---------------GE-IDV  172 (362)
Q Consensus       114 ~--pg~~shl~~Ty~Av~sL~ilg~~~~l~~id---r~~~~~fL~s~Q~~dGgF~~~~~---------------ge-~D~  172 (362)
                      .  .+..|....|..++.+|..+....  +.+.   ..+.++||+++|++||||.....               ++ .|.
T Consensus        88 s~~~~~~p~~d~Ta~~l~aL~~~~~~~--~~~~~~ai~~av~~Lls~Qn~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d~  165 (352)
T d2sqca1          88 QFDNVYYPDVCDTAVVVWALNTLRLPD--ERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDP  165 (352)
T ss_dssp             SSSCTTCCBHHHHHHHHHHHTTCCCSC--HHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCC
T ss_pred             ccCCCCCCccccHHHHHHhhhhhcCCc--hhhHHHHHHHHHHHHHHhhcCCCCcccccccCccchhhccchhhhhhccCC
Confidence            3  334677888888888887775321  1111   35789999999999999974210               11 122


Q ss_pred             chHHHH-HHHHHHhcc---CCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCC-cccHHHHHHH
Q 018000          173 RACYTA-ISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD-RLDLDALIGW  247 (362)
Q Consensus       173 r~~Y~a-l~~~~LL~~---~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~-~~d~~~l~~W  247 (362)
                      -.+.+. .++..+...   .....++++++||+++|++||||.+..+ .++...|+.++.+|..+|... ...++++++|
T Consensus       166 ~~~~~T~~~l~al~~~g~~~~~~~I~kav~~L~~~Q~~dG~w~~~~~-~~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~~  244 (352)
T d2sqca1         166 PSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKALDW  244 (352)
T ss_dssp             CBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhccCCCCCccccCC-CCcchHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            111111 111222221   1236789999999999999999977544 467888999999999998643 3458899999


Q ss_pred             HHhCCCCCCcccCC
Q 018000          248 VVFRQGVEGGFQGR  261 (362)
Q Consensus       248 L~~rQ~~eGGF~GR  261 (362)
                      |.++|.++|||...
T Consensus       245 L~~~Q~~dGgWg~~  258 (352)
T d2sqca1         245 VEQHQNPDGGWGED  258 (352)
T ss_dssp             HHHTCCTTSCCCCC
T ss_pred             HHhccCCCCCcccC
Confidence            99999999999643

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.1e-12  Score=126.98  Aligned_cols=193  Identities=19%  Similarity=0.245  Sum_probs=133.4

Q ss_pred             cCChhHHHHHHHHHHHHhCCCCC---HHhHHHHHHHHhhccCCC--------------CCCCCC--CCCCCchhhhHHHH
Q 018000           68 DANRPWICYWILHSMALLGEFVD---ADLEDRTIEFLSRCQDPN--------------GGYGGG--PGQMPHLATTYAAV  128 (362)
Q Consensus        68 D~sr~w~~Yw~l~sL~lLg~~~~---~~~~~~~i~~l~~~Q~~d--------------GGFgg~--pg~~shl~~Ty~Av  128 (362)
                      +.|..|-+=+++.+|.--|....   ....+++.+||+..|..+              |||+..  ....|..-.|..++
T Consensus        98 ~~S~vWDTal~~~AL~~ag~~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~n~~~Pd~DdTA~~l  177 (448)
T d1w6ka1          98 NGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEAL  177 (448)
T ss_dssp             SCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHhhccCcCCCcchhhcCCCCCCceeCCcCCCCCCCCccHHHHH
Confidence            45788999999999876663212   234778999999998643              566543  23568888999999


Q ss_pred             HHHHHcCC--CCCCChhh---HHHHHHHHHhcCCCCCceeecc------------------CCCcccch---HHHHHHHH
Q 018000          129 NALISLGG--EKSLPSIN---RSKVYTFLKCMKDPSGAFRMHD------------------AGEIDVRA---CYTAISVA  182 (362)
Q Consensus       129 ~sL~ilg~--~~~l~~id---r~~~~~fL~s~Q~~dGgF~~~~------------------~ge~D~r~---~Y~al~~~  182 (362)
                      .+|..+..  ...-+.++   ..+.++||.++|++||||....                  +-..|...   |..++.++
T Consensus       178 ~al~~~~~~~~~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL  257 (448)
T d1w6ka1         178 KAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQAL  257 (448)
T ss_dssp             HHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHH
T ss_pred             HHHHHHhccCccccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHH
Confidence            99877632  11112222   3468999999999999997421                  11123322   33333333


Q ss_pred             HHhcc-CC-------HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc-----ccHHHHHHHHH
Q 018000          183 SILNI-LD-------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR-----LDLDALIGWVV  249 (362)
Q Consensus       183 ~LL~~-~~-------~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~-----~d~~~l~~WL~  249 (362)
                      ..++. .+       ...++++++||.+.|+.||||.+..+. .+.+-|.++|.+|..+|....     .-++++++||+
T Consensus       258 ~~~~~~~p~~r~~~~~~~i~ral~yL~~~Q~~DGsW~g~wg~-~~~ygT~~al~aL~~~G~~~~~~~~~~~v~ka~~wLl  336 (448)
T d1w6ka1         258 KYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGV-CFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLL  336 (448)
T ss_dssp             HHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHH
T ss_pred             HHHhhhCCccccccchHHHHHHHHHHHccCCCCCcccccCCC-cccHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHH
Confidence            33321 11       245789999999999999999876543 577779999999999986432     24789999999


Q ss_pred             hCCCCCCcccCC
Q 018000          250 FRQGVEGGFQGR  261 (362)
Q Consensus       250 ~rQ~~eGGF~GR  261 (362)
                      ++|..+|||...
T Consensus       337 s~Q~~DGGWge~  348 (448)
T d1w6ka1         337 SRQMADGGWGED  348 (448)
T ss_dssp             TTCCTTSCCCBC
T ss_pred             hccCCCCCccCC
Confidence            999999999653

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.37  E-value=1.1e-11  Score=115.09  Aligned_cols=178  Identities=17%  Similarity=0.120  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHH
Q 018000           73 WICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFL  152 (362)
Q Consensus        73 w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL  152 (362)
                      .++.-.+..+.++|. ++.+.++++++||++.|++||||+-.++..+++..|..|+.+|.++|...  +..-..++.+||
T Consensus         5 ~~~a~~i~~~~~~g~-~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~T~~~~~AL~~~g~~~--~~~~~~ra~~~i   81 (271)
T d2sqca2           5 TMEAEYVLLCHILDR-VDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSR--DEEPMQKALRFI   81 (271)
T ss_dssp             HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCT--TSHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCCCCCccCCCCCCCcHHHHHHHHHHHHHhCCCC--chHHHHHHHHHH
Confidence            344556668999996 78888999999999999999999998889999999999999999998542  222246777788


Q ss_pred             HhcCCCCCc--e-----------------ee-------------cc----------------------------------
Q 018000          153 KCMKDPSGA--F-----------------RM-------------HD----------------------------------  166 (362)
Q Consensus       153 ~s~Q~~dGg--F-----------------~~-------------~~----------------------------------  166 (362)
                      .++.-..+.  |                 ..             ++                                  
T Consensus        82 ~~~GG~~~~~~~~k~~LA~~G~~~w~~v~~iP~E~~llP~~~p~~p~~~~~~~R~v~~p~~~l~~~~~~~~~~~~~~l~e  161 (271)
T d2sqca2          82 QSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPE  161 (271)
T ss_dssp             HHTTCGGGSCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGGCCGG
T ss_pred             HHcCCcccCchHHHHHHHhcCCCCccccCCCCHHHHcCCCccccCchhhheehhhhhhhHHHhhccCccCCCchhhHHHH
Confidence            876421100  0                 00             00                                  


Q ss_pred             -----------CCCcccchHH-HHHHHHHHhccC-----CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHH
Q 018000          167 -----------AGEIDVRACY-TAISVASILNIL-----DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAA  229 (362)
Q Consensus       167 -----------~ge~D~r~~Y-~al~~~~LL~~~-----~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaa  229 (362)
                                 .+.......| .+..++..+..+     ....++++++||++.|++|||||..      ...|+++|.+
T Consensus       162 L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~l~~~~lr~~a~~~a~~wl~~~q~~dGgwG~i------~p~~~~~l~a  235 (271)
T d2sqca2         162 LYETDVPPRRRGAKGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGI------QPPWFYALIA  235 (271)
T ss_dssp             GGCCSSCCCCCCCTTCCCHHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHCCTTSSSTTS------HHHHHHHHHH
T ss_pred             HhcCCCccccccccccccHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHccCCCCcccc------CHHHHHHHHH
Confidence                       0000111122 111222222211     1255788999999999999999843      2247899999


Q ss_pred             HHHhccCCcccHHHHHHHHHhC--CCCCCccc
Q 018000          230 MILINEADRLDLDALIGWVVFR--QGVEGGFQ  259 (362)
Q Consensus       230 L~llg~~~~~d~~~l~~WL~~r--Q~~eGGF~  259 (362)
                      |..+|..+...+.+.+++|..-  |.++||+.
T Consensus       236 L~~~G~~~~p~v~r~l~~l~~~~~~~~dG~~~  267 (271)
T d2sqca2         236 LKILDMTQHPAFIKGWEGLELYGVELDYGGWM  267 (271)
T ss_dssp             HHHTTCTTSHHHHHHHHGGGGGEEECTTSCEE
T ss_pred             HHhcCCCCCHHHHHHHHHHHHheeEcCCCcee
Confidence            9999977666789999999763  56888874

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.8e-06  Score=76.34  Aligned_cols=71  Identities=10%  Similarity=0.078  Sum_probs=56.3

Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceee
Q 018000           94 EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM  164 (362)
Q Consensus        94 ~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~  164 (362)
                      +++.++-|.++|++||||+..++..++...|-+++..|..+...-..+.-...+...|+.+.|.++|+|..
T Consensus        54 i~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~  124 (326)
T d1hzfa_          54 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQD  124 (326)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCC
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCchHHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHhhhcccccc
Confidence            44556678899999999999998889999999999999887532122333456788999999999999975

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=98.23  E-value=2.2e-06  Score=78.55  Aligned_cols=79  Identities=18%  Similarity=0.242  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCC-cccHHHHHHHHHhCCC
Q 018000          175 CYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD-RLDLDALIGWVVFRQG  253 (362)
Q Consensus       175 ~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~-~~d~~~l~~WL~~rQ~  253 (362)
                      +...+.++.+++..+.+.++++++||++.|+.||||+..++..++...|.-++.||.++|... ...+.++.+||.+++.
T Consensus         7 ~a~~i~~~~~~g~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~T~~~~~AL~~~g~~~~~~~~~ra~~~i~~~GG   86 (271)
T d2sqca2           7 EAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGG   86 (271)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCCcHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCC
Confidence            555677788889888889999999999999999999999999999999999999999998653 3347899999999855

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=98.20  E-value=4.4e-06  Score=80.71  Aligned_cols=164  Identities=16%  Similarity=0.193  Sum_probs=90.7

Q ss_pred             hHHHHHHHHhhccCCCCCCCCCCC---------C-----------------------------CCchhhhHHHHHHHHHc
Q 018000           93 LEDRTIEFLSRCQDPNGGYGGGPG---------Q-----------------------------MPHLATTYAAVNALISL  134 (362)
Q Consensus        93 ~~~~~i~~l~~~Q~~dGGFgg~pg---------~-----------------------------~shl~~Ty~Av~sL~il  134 (362)
                      ...++.+.|+..|+++|||...-.         .                             ...-..|..+|..|+.+
T Consensus        82 eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~~  161 (408)
T d1r76a_          82 AARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQV  161 (408)
T ss_dssp             HHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCCCccccccccccchhhhhhhccccccccchhhhhhhhhhcccCCCcCcchHHHHHHHHHHH
Confidence            456899999999999999953210         0                             01123478888888766


Q ss_pred             CC---CCCCChh--hHHHHHHHHHhcCCCCCceeeccCCCcccchHH---------HHHHHHHHhc----------cCCH
Q 018000          135 GG---EKSLPSI--NRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACY---------TAISVASILN----------ILDD  190 (362)
Q Consensus       135 g~---~~~l~~i--dr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y---------~al~~~~LL~----------~~~~  190 (362)
                      -.   +..-..+  -..+.++||+.+|.+||||.-...    .+..|         ..+-++.+|.          .+++
T Consensus       162 ~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p----~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~  237 (408)
T d1r76a_         162 VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWP----LEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPP  237 (408)
T ss_dssp             HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSS----CCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCH
T ss_pred             HHHcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCC----CCcccccccccCchHHHHHHHHHHHHHHhccccccCCH
Confidence            21   1000111  124789999999999999975321    11122         1111222221          1222


Q ss_pred             -------HHHHHHHHHHHhccCCCCCc----CCC-------CC----CC-CchhHhHHHHHHHHHhccCC-cc----cHH
Q 018000          191 -------ELLQNVGNYILSCQTYEGGI----AGE-------PG----SE-AHGGYTFCGLAAMILINEAD-RL----DLD  242 (362)
Q Consensus       191 -------~~~~~~~~yI~scQ~~dGGF----g~~-------pg----~e-sh~~~TfcALaaL~llg~~~-~~----d~~  242 (362)
                             ..+++.++||+++|..+||+    +..       |-    -| +...-+-.+-..+.||.... ..    -++
T Consensus       238 ~~r~r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~~~~aI~  317 (408)
T d1r76a_         238 AIRTRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIR  317 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHHHHHHhCCCCChhHHHHHH
Confidence                   35789999999999999884    321       10    01 22211112222233343222 11    378


Q ss_pred             HHHHHHHhCCCCCCcccC
Q 018000          243 ALIGWVVFRQGVEGGFQG  260 (362)
Q Consensus       243 ~l~~WL~~rQ~~eGGF~G  260 (362)
                      +++.||.+.|..+|++-.
T Consensus       318 ~av~Wl~~~~~~~~~~~~  335 (408)
T d1r76a_         318 GGVAWLNTSVIRDRAWVK  335 (408)
T ss_dssp             HHHHHHHHSCCCC-----
T ss_pred             HHHHHHHhcccCCceeee
Confidence            999999999998887753

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.3e-06  Score=77.03  Aligned_cols=76  Identities=17%  Similarity=0.155  Sum_probs=65.4

Q ss_pred             HHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcC
Q 018000           79 LHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMK  156 (362)
Q Consensus        79 l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q  156 (362)
                      +-++.++|.+++++.++++++||.+.|++||||+-.++..+.+..|.-|..+|.++|.+.  +.....++.+||.+.-
T Consensus        10 Vial~i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~--~~p~m~rAr~wI~~~G   85 (279)
T d1w6ka2          10 LITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGP--DDPDLVRARNILHKKG   85 (279)
T ss_dssp             HHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCT--TSHHHHHHHHHHHHTT
T ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHhCC
Confidence            457889999899999999999999999999999998888999999999999999999642  2233578889999853

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.3e-05  Score=72.06  Aligned_cols=73  Identities=14%  Similarity=0.083  Sum_probs=62.7

Q ss_pred             HHHHHHhcc-CCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCC-cccHHHHHHHHHhC
Q 018000          179 ISVASILNI-LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD-RLDLDALIGWVVFR  251 (362)
Q Consensus       179 l~~~~LL~~-~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~-~~d~~~l~~WL~~r  251 (362)
                      +.++++++. .+.+..+++++||.++|+.||||+..+++.++...|.-|..||.++|... ...+.++.+||.++
T Consensus        10 Vial~i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~~p~m~rAr~wI~~~   84 (279)
T d1w6ka2          10 LITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHKK   84 (279)
T ss_dssp             HHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHT
T ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence            445677775 46678899999999999999999999999999999999999999999743 33478999999997

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.00051  Score=61.54  Aligned_cols=71  Identities=13%  Similarity=0.062  Sum_probs=51.3

Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhh-HHHHHHHHHhcCCCCCceee
Q 018000           94 EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSIN-RSKVYTFLKCMKDPSGAFRM  164 (362)
Q Consensus        94 ~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~id-r~~~~~fL~s~Q~~dGgF~~  164 (362)
                      +++.++-|.++|++||||+..++..++...|.+++..|......-....-. .+....|+.+.|..+|.|..
T Consensus        56 i~~gi~rl~~~Q~~dGgf~~w~~~~~~~~lTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~e  127 (294)
T d1c3da_          56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQE  127 (294)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCC
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhhhhcCCCccc
Confidence            345566789999999999998888899999999999998875321111111 23455666678888888863

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=97.74  E-value=1.3e-05  Score=75.15  Aligned_cols=162  Identities=17%  Similarity=0.210  Sum_probs=87.5

Q ss_pred             HHHHHHhhccCCCCCCCCCC-----CC------C--CchhhhHHHHHHHHHcCC---CCCCChhhHHHHHHHHHhcCCCC
Q 018000           96 RTIEFLSRCQDPNGGYGGGP-----GQ------M--PHLATTYAAVNALISLGG---EKSLPSINRSKVYTFLKCMKDPS  159 (362)
Q Consensus        96 ~~i~~l~~~Q~~dGGFgg~p-----g~------~--shl~~Ty~Av~sL~ilg~---~~~l~~idr~~~~~fL~s~Q~~d  159 (362)
                      ++.++|++.|+++|||.-..     ..      .  -.-..|..++..|+.+..   ++.+.. -..+.++||+.+|.++
T Consensus        27 ~~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d~~~~~-A~~Rgi~~LL~~Q~~n  105 (324)
T d1gxma_          27 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRD-AVRKAANFLVNSQYST  105 (324)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHCCTT
T ss_pred             hhhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCChhHHH-HHHHHHHHHHhhccCC
Confidence            46788999999999997321     00      1  133457777777766531   111111 1257899999999999


Q ss_pred             Cceeec-cC-CC--ccc----chHHHHHHHHHHh---------ccCCH-------HHHHHHHHHHHhccCCCCCc----C
Q 018000          160 GAFRMH-DA-GE--IDV----RACYTAISVASIL---------NILDD-------ELLQNVGNYILSCQTYEGGI----A  211 (362)
Q Consensus       160 GgF~~~-~~-ge--~D~----r~~Y~al~~~~LL---------~~~~~-------~~~~~~~~yI~scQ~~dGGF----g  211 (362)
                      |||.-. +. +.  ..+    ....-++.++.-.         ..++.       ..++++++||+++|-.+||+    |
T Consensus       106 GGWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~gg~~t~Wg  185 (324)
T d1gxma_         106 GALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWC  185 (324)
T ss_dssp             SCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred             CCccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhcccCCCCChhh
Confidence            999643 11 11  111    0111122222111         11221       34789999999999998884    3


Q ss_pred             CC-------CC----CC-CchhHhHHHHHHHHHhccCCccc----HHHHHHHHHhCCCCCCcc
Q 018000          212 GE-------PG----SE-AHGGYTFCGLAAMILINEADRLD----LDALIGWVVFRQGVEGGF  258 (362)
Q Consensus       212 ~~-------pg----~e-sh~~~TfcALaaL~llg~~~~~d----~~~l~~WL~~rQ~~eGGF  258 (362)
                      ..       |-    -| +...-+-.+-..+.||..+...+    ++++++|+.+.+...+|+
T Consensus       186 ~Qhd~~tl~Pa~AR~yE~~sls~~ES~~iv~~LM~~~~s~~i~~ai~~avaWl~~~k~~~~~~  248 (324)
T d1gxma_         186 AQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTYLEGY  248 (324)
T ss_dssp             SEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTSEEEE
T ss_pred             hccCcccccccccccccChhhhhhhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhchhcccce
Confidence            21       10    01 11111112222333444443333    578889999887765666

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=97.56  E-value=0.00013  Score=70.22  Aligned_cols=121  Identities=12%  Similarity=0.134  Sum_probs=72.3

Q ss_pred             hHHHHHHHHhhccCCCCCCCCC-C---CCCCch----hhhHHHHHHHHHcCC-CCCCChhh----------HHHHHHHHH
Q 018000           93 LEDRTIEFLSRCQDPNGGYGGG-P---GQMPHL----ATTYAAVNALISLGG-EKSLPSIN----------RSKVYTFLK  153 (362)
Q Consensus        93 ~~~~~i~~l~~~Q~~dGGFgg~-p---g~~shl----~~Ty~Av~sL~ilg~-~~~l~~id----------r~~~~~fL~  153 (362)
                      -..++++||+..|++||||... |   +...|+    ..+--++..|..+.. ...+..++          .++.++||+
T Consensus       176 a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r~r~~~a~~rgi~~ll  255 (408)
T d1r76a_         176 AALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIV  255 (408)
T ss_dssp             HHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCccccCCCCcccccccccCchHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999753 2   112222    111223333333211 11222222          257899999


Q ss_pred             hcCCCCCceeeccCCCc----------------ccchHHHHHHHHHHhccC--CH---HHHHHHHHHHHhccCCCCCcCC
Q 018000          154 CMKDPSGAFRMHDAGEI----------------DVRACYTAISVASILNIL--DD---ELLQNVGNYILSCQTYEGGIAG  212 (362)
Q Consensus       154 s~Q~~dGgF~~~~~ge~----------------D~r~~Y~al~~~~LL~~~--~~---~~~~~~~~yI~scQ~~dGGFg~  212 (362)
                      +.|.++||+...++...                -+.+.-++.++..|+.+.  ++   ..++++++|+.++|-.+|++..
T Consensus       256 ~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~~~~aI~~av~Wl~~~~~~~~~~~~  335 (408)
T d1r76a_         256 ETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWVK  335 (408)
T ss_dssp             HHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC-----
T ss_pred             HHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHHHHHHhCCCCChhHHHHHHHHHHHHHhcccCCceeee
Confidence            99999999876543221                244556777777777654  33   2578999999999999998865


Q ss_pred             C
Q 018000          213 E  213 (362)
Q Consensus       213 ~  213 (362)
                      .
T Consensus       336 ~  336 (408)
T d1r76a_         336 S  336 (408)
T ss_dssp             -
T ss_pred             c
Confidence            3

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=97.21  E-value=7.3e-05  Score=69.84  Aligned_cols=115  Identities=14%  Similarity=0.174  Sum_probs=70.4

Q ss_pred             HHHHHHHhcCCCCCceeec-------------cCCCcccchHHHHHHHHHHhcc--CC---HHHHHHHHHHHHhccCCCC
Q 018000          147 KVYTFLKCMKDPSGAFRMH-------------DAGEIDVRACYTAISVASILNI--LD---DELLQNVGNYILSCQTYEG  208 (362)
Q Consensus       147 ~~~~fL~s~Q~~dGgF~~~-------------~~ge~D~r~~Y~al~~~~LL~~--~~---~~~~~~~~~yI~scQ~~dG  208 (362)
                      +..++|++.|.++|||...             ..+.+|-..|..++..+..+..  .+   ...+.++++||+..|+.+|
T Consensus        27 ~~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d~~~~~A~~Rgi~~LL~~Q~~nG  106 (324)
T d1gxma_          27 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  106 (324)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             hhhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhccCCC
Confidence            4568888999999999622             1122566667766555443321  12   2467899999999999999


Q ss_pred             CcCCC-CCCC-CchhHhHH---HHHHHHHhc-----cC-------Cc-------ccHHHHHHHHHhCCCCCCcccCC
Q 018000          209 GIAGE-PGSE-AHGGYTFC---GLAAMILIN-----EA-------DR-------LDLDALIGWVVFRQGVEGGFQGR  261 (362)
Q Consensus       209 GFg~~-pg~e-sh~~~Tfc---ALaaL~llg-----~~-------~~-------~d~~~l~~WL~~rQ~~eGGF~GR  261 (362)
                      ||+.. |... -|...||.   -+.+|.+|.     ..       ..       --++++++||+..|.++||+.++
T Consensus       107 GWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~gg~~t~  183 (324)
T d1gxma_         107 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTV  183 (324)
T ss_dssp             CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECC
T ss_pred             CccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhcccCCCCCh
Confidence            99874 3221 12222322   111222221     11       00       12589999999999999998775

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00041  Score=63.42  Aligned_cols=70  Identities=21%  Similarity=0.217  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc---ccHHHHHHHHHhCCCCCCcccCC
Q 018000          192 LLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR---LDLDALIGWVVFRQGVEGGFQGR  261 (362)
Q Consensus       192 ~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~---~d~~~l~~WL~~rQ~~eGGF~GR  261 (362)
                      .+++.++-|++.|++||||+..|+.+++...|.+++-+|..+.+...   -.+.+.+.|+..+|..+|+|.-.
T Consensus        53 ~i~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~~  125 (326)
T d1hzfa_          53 LIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDP  125 (326)
T ss_dssp             HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCS
T ss_pred             HHHHHHHHHHHhcCCCCCcccCCCCCCchHHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHhhhccccccc
Confidence            45677788889999999999999999999999999999999876433   34678899999999999999764

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.008  Score=53.34  Aligned_cols=68  Identities=16%  Similarity=0.058  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCccc---HHH-HHHHHHhCCCCCCccc
Q 018000          192 LLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD---LDA-LIGWVVFRQGVEGGFQ  259 (362)
Q Consensus       192 ~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d---~~~-l~~WL~~rQ~~eGGF~  259 (362)
                      .++..++=|.+.|++||||+..++.+++...|.+++-.|..+.+....+   +.+ ...|+.+.|..+|-|.
T Consensus        55 ~i~~gi~rl~~~Q~~dGgf~~w~~~~~~~~lTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~  126 (294)
T d1c3da_          55 LIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQ  126 (294)
T ss_dssp             HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBC
T ss_pred             HHHHHHHHHHHhcCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhhhhcCCCcc
Confidence            4567777888999999999999999999999999999999887654332   333 4445556676666664