Citrus Sinensis ID: 018034
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| 224141933 | 362 | predicted protein [Populus trichocarpa] | 0.997 | 0.997 | 0.876 | 0.0 | |
| 449441888 | 361 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.994 | 0.873 | 0.0 | |
| 255557757 | 359 | conserved hypothetical protein [Ricinus | 0.988 | 0.997 | 0.865 | 1e-179 | |
| 224089306 | 359 | predicted protein [Populus trichocarpa] | 0.988 | 0.997 | 0.856 | 1e-177 | |
| 388516027 | 360 | unknown [Lotus japonicus] | 0.988 | 0.994 | 0.815 | 1e-176 | |
| 359806029 | 365 | uncharacterized protein LOC100783788 [Gl | 1.0 | 0.991 | 0.821 | 1e-176 | |
| 356552496 | 363 | PREDICTED: uncharacterized protein LOC10 | 0.997 | 0.994 | 0.826 | 1e-173 | |
| 388500814 | 360 | unknown [Medicago truncatula] | 0.986 | 0.991 | 0.8 | 1e-173 | |
| 225430416 | 364 | PREDICTED: uncharacterized protein LOC10 | 0.997 | 0.991 | 0.832 | 1e-172 | |
| 297812727 | 367 | hypothetical protein ARALYDRAFT_910571 [ | 1.0 | 0.986 | 0.814 | 1e-171 |
| >gi|224141933|ref|XP_002324315.1| predicted protein [Populus trichocarpa] gi|222865749|gb|EEF02880.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/363 (87%), Positives = 342/363 (94%), Gaps = 2/363 (0%)
Query: 1 MGCGHLFYSTLVTFSVALITYNIIISANAPLKQDFPNPSS-SSISVDPVIEMPLERSRRH 59
MGCG+ F++ L+T SVALITYNI+ISANAPLKQD P PSS S++ VDPVI+MPLERSRR
Sbjct: 1 MGCGNFFFTVLITLSVALITYNILISANAPLKQDLPGPSSRSTLLVDPVIKMPLERSRR- 59
Query: 60 GAAANKRLFHTAMTASDSVYNTWQCRVMYYWFKKFQNGPNSEMGGFTRILHSGKPDKYMD 119
+ KRLFHTA+TASDSVYNTWQCRVMYYW+KK ++GPNSEMGGFTRILHSGKPDK+M+
Sbjct: 60 SSFGKKRLFHTAVTASDSVYNTWQCRVMYYWYKKHKDGPNSEMGGFTRILHSGKPDKFME 119
Query: 120 EIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIPNLSKD 179
EIPTFIAQPLPAGMDQGYIVLNRPWAFVQWL+K DIKE+YILMAEPDHIIVKPIPNLSKD
Sbjct: 120 EIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLQKTDIKEDYILMAEPDHIIVKPIPNLSKD 179
Query: 180 GLGAAFPFFYIEPKKYESVLRKYFPKDMGPITNIDPIGNSPVVVGRDSLKKIAPVWMNVS 239
GLGAAFPFFYIEPKKYESVLRKYFP+D GPITNIDPIGNSPV+VG++SLKKIAP WMNVS
Sbjct: 180 GLGAAFPFFYIEPKKYESVLRKYFPEDKGPITNIDPIGNSPVIVGKESLKKIAPTWMNVS 239
Query: 240 LAMKKDPETDKAFGWVLEMYAYAVASALNGVGNILYKDFMIQPPWDTEVSNKFIIHYTYG 299
LAMKKDPETDKAFGWVLEMY YAV+SAL+GVGNILYKDFMIQPPWDTEV KFIIHYTYG
Sbjct: 240 LAMKKDPETDKAFGWVLEMYGYAVSSALHGVGNILYKDFMIQPPWDTEVGKKFIIHYTYG 299
Query: 300 CDYDMKGHLTYGKIGEWRFDKRSYDSVPPPRNLPLPPPGVPESVVTLVKMVNEATANIPN 359
CDYDMKG LTYGKIGEWRFDKRSYD+V PPRNLPLPPPGVPESVVTLVKMVNEATANIPN
Sbjct: 300 CDYDMKGKLTYGKIGEWRFDKRSYDTVIPPRNLPLPPPGVPESVVTLVKMVNEATANIPN 359
Query: 360 WGS 362
WGS
Sbjct: 360 WGS 362
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441888|ref|XP_004138714.1| PREDICTED: uncharacterized protein LOC101214063 [Cucumis sativus] gi|449493329|ref|XP_004159257.1| PREDICTED: uncharacterized LOC101214063 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255557757|ref|XP_002519908.1| conserved hypothetical protein [Ricinus communis] gi|223540954|gb|EEF42512.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224089306|ref|XP_002308683.1| predicted protein [Populus trichocarpa] gi|222854659|gb|EEE92206.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|388516027|gb|AFK46075.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|359806029|ref|NP_001241175.1| uncharacterized protein LOC100783788 [Glycine max] gi|255639667|gb|ACU20127.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|356552496|ref|XP_003544603.1| PREDICTED: uncharacterized protein LOC100813136 [Glycine max] | Back alignment and taxonomy information |
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| >gi|388500814|gb|AFK38473.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|225430416|ref|XP_002285410.1| PREDICTED: uncharacterized protein LOC100249264 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297812727|ref|XP_002874247.1| hypothetical protein ARALYDRAFT_910571 [Arabidopsis lyrata subsp. lyrata] gi|297320084|gb|EFH50506.1| hypothetical protein ARALYDRAFT_910571 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| TAIR|locus:504955105 | 366 | AT5G25265 "AT5G25265" [Arabido | 1.0 | 0.989 | 0.765 | 1.5e-154 | |
| TAIR|locus:2059573 | 358 | AT2G25260 "AT2G25260" [Arabido | 0.975 | 0.986 | 0.647 | 4.6e-128 | |
| TAIR|locus:2185046 | 358 | AT5G13500 "AT5G13500" [Arabido | 0.953 | 0.963 | 0.602 | 1.6e-118 | |
| TAIR|locus:2082314 | 802 | AT3G01720 "AT3G01720" [Arabido | 0.646 | 0.291 | 0.25 | 1.3e-08 |
| TAIR|locus:504955105 AT5G25265 "AT5G25265" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1507 (535.5 bits), Expect = 1.5e-154, P = 1.5e-154
Identities = 280/366 (76%), Positives = 306/366 (83%)
Query: 1 MGCGH-LFYSTLVTFSVALITYNIIISANAPLKQDFPNPXXXXX-XVDPVIEMPLERSRR 58
MGCG LFY L+T SVALITYNIIISANAPLKQ FP +DPVIE+P R
Sbjct: 1 MGCGGTLFYPLLITLSVALITYNIIISANAPLKQGFPGRSSSSDISIDPVIELPRGGGSR 60
Query: 59 HGAAANKRLFHTAMTASDSVYNTWQCRVMYYWFKKFQN--GPNSEMGGFTRILHSGKPDK 116
+ RLFHTA+TASDSVYNTWQCRVMYYWFKK Q GP SEMGGFTRILHSGKPD+
Sbjct: 61 NNDGKRIRLFHTAVTASDSVYNTWQCRVMYYWFKKIQASAGPGSEMGGFTRILHSGKPDQ 120
Query: 117 YMDEIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIPNL 176
YMDEIPTF+AQPLP+GMDQGY+VLNRPWAFVQWL++ DIKE+YILM+EPDHIIVKPIPNL
Sbjct: 121 YMDEIPTFVAQPLPSGMDQGYVVLNRPWAFVQWLQQTDIKEDYILMSEPDHIIVKPIPNL 180
Query: 177 SKDGLGAAFPFFYIEPKKYESVLRKYFPKDMGPITNIDPIGNSPVVVGRDSLKKIAPVWM 236
+KDGLGAAFPFFYIEPKKYE VLRKY+P+ GP+TNIDPIGNSPV+VG+D+LKKIAP WM
Sbjct: 181 AKDGLGAAFPFFYIEPKKYEKVLRKYYPEVRGPVTNIDPIGNSPVIVGKDALKKIAPTWM 240
Query: 237 NVSLAMKKDPETDKAFGWVLEMYAYAVASALNGVGNILYKDFMIQPPWDTEVSNKFIIHY 296
NVSLAMKKDPE DKAFGWVLEMYAYAV+SAL+GV NIL+KDFMIQPPWD EV +K+IIHY
Sbjct: 241 NVSLAMKKDPEADKAFGWVLEMYAYAVSSALHGVSNILHKDFMIQPPWDIEVGDKYIIHY 300
Query: 297 TYGCDYDMKGHLTYGKIGEWRFDKRSYDSXXXXXXXXXXXXXXXXXXXTLVKMVNEATAN 356
TYGCDYDMKG LTYGKIGEWRFDKRSYDS TLVKM+NEATAN
Sbjct: 301 TYGCDYDMKGKLTYGKIGEWRFDKRSYDSKPPPRNLTMPPPGVSQSVVTLVKMINEATAN 360
Query: 357 IPNWGS 362
IPNWGS
Sbjct: 361 IPNWGS 366
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| TAIR|locus:2059573 AT2G25260 "AT2G25260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2185046 AT5G13500 "AT5G13500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2082314 AT3G01720 "AT3G01720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 362 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 42.9 bits (100), Expect = 2e-04
Identities = 46/384 (11%), Positives = 101/384 (26%), Gaps = 136/384 (35%)
Query: 1 M-GCGHLFYSTLVT-------------FSVALITYNIIISANAPLKQ----------DFP 36
+ G G + + F + + S L+ ++
Sbjct: 158 VLGSGK---TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 37 NPSSSSISVDPVIEMPLERSRRHGAAANKRLFHTAMTASDSVYNTW-------QCRVMYY 89
+ S S ++ I RR + + + +V N C+++
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLK---SKPYENCLLVLLNVQNAKAWNAFNLSCKILL- 270
Query: 90 WFKKFQNGPNSEMGGFTRILHSGKPDKY-MDEIPTFIAQPLPAGMDQGYIVLNRPWA--- 145
TR K D + + +D + L
Sbjct: 271 ---------------TTR-------FKQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSL 306
Query: 146 FVQWLE--KADIKEEYILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVL---- 199
+++L+ D+ E +L P + + I +DGL + ++ K +++
Sbjct: 307 LLKYLDCRPQDLPRE-VLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 200 --------RKY------FPKDMGPITNIDPI-------GNSPVVVGRDSLKKIAPVWMNV 238
RK FP +I P + + K+
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPS----AHI-PTILLSLIWFDVIKSDVMVVVNKLH----KY 414
Query: 239 SLAMKKDPETDKAFGWVLEMYAYAVASALNGVGNILYKDFMIQPPWDTEVSNKFIIHYTY 298
SL +K P+ ++ S +Y + ++ + + + HY
Sbjct: 415 SLV-EKQPKE----------STISIPS--------IYLELKVKLENEYALHRSIVDHYNI 455
Query: 299 GCDYDMKG------------HLTY 310
+D H+ +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGH 479
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00