Citrus Sinensis ID: 018152

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGSSLSDPARRSKDALSSFLKTFTKEDDLKFIAKVVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMFPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKVDYFLILSFGHSV
ccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccEEEcccccccccccccEEEEEccEEEEccccEEEEEEEEEEccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEccHHHHHHHccccccEEcccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccHHHHHccccccccEEEccccEEEEEccccc
cccHHccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHHccccccccHHHHHcHHHcccccccccccccccccEcccccccccccccccEEEEEEEEEEcccccEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEccccHHHHccccccHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHcccEEccEEEcccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccHHHccHHHHHHHHHccccccccHHHHHHHccccccEEEccccEEEEEEEccc
MDQKLDTLEKKALVEIVKLIQKRRmegtaggwkDFLTSYDkkfgsslsdparrSKDALSSFLKTFTKEDDLKFIAKVVQSHLNRDLVEQLkktspddespeqRLVRLTlqhpqyplcymfpssdegwlvtklgkssktmtSNIMYAVDCEMVLcedgseglVRLCVVDRNLKVTIDELVKPEKAVADYRSEitgltaddlvGVTCSLAEIQKRMKKLLSNGTILVGHSLnndlevlkldhprvidtSLIFKYvdeyrrpslYNLCKSVlgyeirkkgtphncldDASAAMKLVLAIIERRVDnavpllqeDVAETERARLFLhriptkvpseelhgvipgdftIEAKVDYFLILSFGHSV
mdqkldtlekkALVEIVKLIqkrrmegtaggwkDFLTSYDKKFgsslsdparrsKDALSSFLktftkeddLKFIAKVVQSHLNRDLVEqlkktspddespeQRLVRLTLQHPQYPLCYMFPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKvtidelvkpekavaDYRSeitgltaddlvGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIfkyvdeyrrpSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERARLFLhriptkvpseelhgVIPGDFTIEAKVDYFLILSFGHSV
MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGSSLSDPARRSKDALSSFLKTFTKEDDLKFIAKVVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMFPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKVDYFLILSFGHSV
**********KALVEIVKLIQKRRMEGTAGGWKDFLTSYD********************FLKTFTKEDDLKFIAKVVQSHLNR*******************LVRLTLQHPQYPLCYMFPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKVDYFLILSFG***
********EKKALVEIV*******************************************************************************************************PSS********************MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRK****HNCLDDASAAMKLVLAIIERRVDNA*************************PSEELHGVIPGDFTIEAKVDYFLILSFGHSV
MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGSSLSDPARRSKDALSSFLKTFTKEDDLKFIAKVVQSHLNRDLVEQ************QRLVRLTLQHPQYPLCYMFPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKVDYFLILSFGHSV
****LDTLEKKALVEIVKLIQKRRME*TAGGWKDFL*******************DALSSFLKTFTKEDDLKFIAKVVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMFPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKVDYFLILSFGHSV
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MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGSSLSDPARRSKDALSSFLKTFTKEDDLKFIAKVVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMFPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKVDYFLILSFGHSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query360 2.2.26 [Sep-21-2011]
Q8RXK2 782 Small RNA degrading nucle yes no 0.955 0.439 0.571 1e-114
A3KPE8409 Small RNA degrading nucle no no 0.980 0.863 0.539 1e-106
Q9FFG1 466 Small RNA degrading nucle no no 0.952 0.736 0.529 8e-94
Q9SN09322 Putative small RNA degrad no no 0.725 0.810 0.493 8e-66
O94443 631 Uncharacterized exonuclea yes no 0.461 0.263 0.394 8e-26
Q8L7M4 567 Small RNA degrading nucle no no 0.45 0.285 0.396 2e-22
Q8IX06675 Exonuclease GOR OS=Homo s yes no 0.436 0.232 0.372 5e-22
P48778690 Exonuclease GOR OS=Pan tr no no 0.436 0.227 0.372 5e-22
P53331 553 RNA exonuclease 1 OS=Sacc yes no 0.5 0.325 0.360 1e-21
A0PJM3583 Putative exonuclease GOR- no no 0.436 0.269 0.366 1e-21
>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1 SV=1 Back     alignment and function desciption
 Score =  413 bits (1061), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/357 (57%), Positives = 264/357 (73%), Gaps = 13/357 (3%)

Query: 1   MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGSSLSDPARRSKDALSS 60
           M+ KL T EKK LV++VKL+QKR +EG  GGWK+FL  YDKK GSSLSDPARRS D L +
Sbjct: 1   MEHKLATAEKKLLVDLVKLVQKRGLEGENGGWKEFLNVYDKKLGSSLSDPARRSNDVLVA 60

Query: 61  FLKTFTKEDDLKFIAKVVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMF 120
           FL TF K++DL+ IA+V+Q   NR+L+E+ K+ +PD E+PEQRLVRLT+ H  YP  Y F
Sbjct: 61  FLLTFKKKEDLQLIARVMQCGANRELIEKFKQETPDKETPEQRLVRLTITHDDYPGNYTF 120

Query: 121 PSSDEGWLVTKLG-KSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELV 179
           PS  E W VT+LG K SK + S  M ++DCEMV CEDGS+ LVR+  VDR+LKV +D+ V
Sbjct: 121 PSYAEDWYVTELGKKKSKVIKSTRMLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFV 180

Query: 180 KPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLD 239
           KP+K V DY+++ITG+TA+DL   T S+A+IQK++++ LS GTILVGH L+NDL+VL++D
Sbjct: 181 KPDKPVIDYKTDITGVTAEDLERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRID 240

Query: 240 HPRVIDTSLIFKYVD--EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAII 297
           H RVIDTS +F++VD  + +RPSL NLCKSVLG E+R  G  HNC+ DA+AAMKLVLA +
Sbjct: 241 HARVIDTSYVFEFVDAPKTQRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAV 300

Query: 298 ERRVDN----------AVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTI 344
           E+              A    QE   E  +A+LFLH+IP  VPSEELHGV+ G+FT+
Sbjct: 301 EKGAATLIQPTEEMMVAEKRRQEARQEAGKAQLFLHKIPHDVPSEELHGVLSGNFTL 357
3'-5' exonuclease degrading single-stranded small RNAs.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|A3KPE8|SDN1_ARATH Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FFG1|SDN2_ARATH Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SN09|SDN4_ARATH Putative small RNA degrading nuclease 4 OS=Arabidopsis thaliana GN=SDN4 PE=3 SV=1 Back     alignment and function description
>sp|O94443|YFE9_SCHPO Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC637.09 PE=3 SV=2 Back     alignment and function description
>sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2 SV=2 Back     alignment and function description
>sp|Q8IX06|GOR_HUMAN Exonuclease GOR OS=Homo sapiens GN=REXO1L1 PE=2 SV=2 Back     alignment and function description
>sp|P48778|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3 Back     alignment and function description
>sp|P53331|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNH70 PE=1 SV=1 Back     alignment and function description
>sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P PE=5 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
359480658389 PREDICTED: small RNA degrading nuclease 0.986 0.912 0.638 1e-132
296087401360 unnamed protein product [Vitis vinifera] 0.983 0.983 0.637 1e-131
255567879 504 exonuclease, putative [Ricinus communis] 0.961 0.686 0.642 1e-123
449448294 524 PREDICTED: small RNA degrading nuclease 0.963 0.662 0.611 1e-123
388506214 525 unknown [Lotus japonicus] 0.958 0.657 0.609 1e-120
356563578 509 PREDICTED: small RNA degrading nuclease 0.958 0.677 0.601 1e-118
79547863 782 small RNA degrading nuclease 3 [Arabidop 0.955 0.439 0.571 1e-113
297794263 776 exonuclease [Arabidopsis lyrata subsp. l 0.955 0.443 0.554 1e-112
10177611 782 unnamed protein product [Arabidopsis tha 0.955 0.439 0.560 1e-110
186510862409 small RNA degrading nuclease 1 [Arabidop 0.980 0.863 0.539 1e-105
>gi|359480658|ref|XP_002278458.2| PREDICTED: small RNA degrading nuclease 3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/357 (63%), Positives = 284/357 (79%), Gaps = 2/357 (0%)

Query: 1   MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGSSLSDPARRSKDALSS 60
           MD  L   EK+ LVE+VKL QKR +EG+ G WKDFL++YD+K G SLSDP+RR  D L S
Sbjct: 1   MDNTLVNAEKEVLVEMVKLAQKRGLEGSKGSWKDFLSTYDRKLGPSLSDPSRRPVDTLVS 60

Query: 61  FLKTFTKEDDLKFIAKVVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMF 120
           FLKTF+KE+DLKF AK++Q + NR +VE+ K  S   ESPEQRL+RLTL+HPQYPL Y F
Sbjct: 61  FLKTFSKEEDLKFFAKILQCYANRKVVEEFKTKSHGKESPEQRLIRLTLEHPQYPLDYSF 120

Query: 121 PSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVK 180
           PS +EGW+VTK+ +  K   SN M AVDCEMVLCEDG+EGLVR+CVVDRNL+V ++ELVK
Sbjct: 121 PSHEEGWMVTKIRQKFKFTRSNAMLAVDCEMVLCEDGTEGLVRVCVVDRNLQVKLNELVK 180

Query: 181 PEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDH 240
           P KAV DYR+EITG++A D    T SL +IQ+ MKKLLS+G +LVGHSL+NDL+ LKLDH
Sbjct: 181 PHKAVVDYRTEITGVSAKDFDETTSSLVDIQRSMKKLLSHGAVLVGHSLHNDLKALKLDH 240

Query: 241 PRVIDTSLIFKYVDE--YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIE 298
            RVIDT+ I+KY ++   RRPSL NLCKS+LGYE+R+K  PHNCLDDASAAMKLVLA +E
Sbjct: 241 ARVIDTAFIYKYENQPINRRPSLNNLCKSILGYEVRQKDAPHNCLDDASAAMKLVLAKLE 300

Query: 299 RRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKVDYFLILS 355
           + +D+A+P + EDV E E A+L LHRIPT VP EEL+ +IPG+FT+E +V Y L++S
Sbjct: 301 QGLDDAIPFVHEDVPENEMAKLLLHRIPTDVPIEELNRIIPGEFTMEHQVQYILLVS 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087401|emb|CBI33775.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255567879|ref|XP_002524917.1| exonuclease, putative [Ricinus communis] gi|223535752|gb|EEF37414.1| exonuclease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449448294|ref|XP_004141901.1| PREDICTED: small RNA degrading nuclease 3-like [Cucumis sativus] gi|449517369|ref|XP_004165718.1| PREDICTED: small RNA degrading nuclease 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388506214|gb|AFK41173.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356563578|ref|XP_003550038.1| PREDICTED: small RNA degrading nuclease 3-like [Glycine max] Back     alignment and taxonomy information
>gi|79547863|ref|NP_201525.2| small RNA degrading nuclease 3 [Arabidopsis thaliana] gi|75330762|sp|Q8RXK2.1|SDN3_ARATH RecName: Full=Small RNA degrading nuclease 3 gi|19423880|gb|AAL87318.1| unknown protein [Arabidopsis thaliana] gi|25055029|gb|AAN71976.1| unknown protein [Arabidopsis thaliana] gi|332010934|gb|AED98317.1| small RNA degrading nuclease 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297794263|ref|XP_002865016.1| exonuclease [Arabidopsis lyrata subsp. lyrata] gi|297310851|gb|EFH41275.1| exonuclease [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|10177611|dbj|BAB10958.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186510862|ref|NP_190579.2| small RNA degrading nuclease 1 [Arabidopsis thaliana] gi|215274638|sp|A3KPE8.1|SDN1_ARATH RecName: Full=Small RNA degrading nuclease 1 gi|126352268|gb|ABO09879.1| At3g50100 [Arabidopsis thaliana] gi|195971097|gb|ACG60893.1| small RNA-degrading nuclease 1 [Arabidopsis thaliana] gi|332645105|gb|AEE78626.1| small RNA degrading nuclease 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
TAIR|locus:2155563 782 SDN3 "small RNA degrading nucl 0.963 0.443 0.572 3.8e-114
TAIR|locus:2083163409 SDN1 "small RNA degrading nucl 0.947 0.833 0.557 5e-99
TAIR|locus:2169717 466 SDN2 "small RNA degrading nucl 0.952 0.736 0.535 4.5e-91
TAIR|locus:2083153322 AT3G50090 [Arabidopsis thalian 0.725 0.810 0.496 2e-63
POMBASE|SPAC637.09 631 SPAC637.09 "ribonuclease H70 ( 0.461 0.263 0.394 2.7e-27
WB|WBGene00015462 594 C05C8.5 [Caenorhabditis elegan 0.6 0.363 0.351 5.2e-26
UNIPROTKB|E1BR93 755 LOC427001 "Uncharacterized pro 0.486 0.231 0.398 9.1e-25
UNIPROTKB|F1P5D1 773 LOC427001 "Uncharacterized pro 0.486 0.226 0.398 9.5e-25
ASPGD|ASPL0000067196 723 AN7566 [Emericella nidulans (t 0.475 0.236 0.385 2.8e-24
UNIPROTKB|Q8IX06675 REXO1L1 "Exonuclease GOR" [Hom 0.430 0.229 0.383 4.1e-24
TAIR|locus:2155563 SDN3 "small RNA degrading nuclease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1027 (366.6 bits), Expect = 3.8e-114, Sum P(2) = 3.8e-114
 Identities = 206/360 (57%), Positives = 267/360 (74%)

Query:     1 MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGSSLSDPARRSKDALSS 60
             M+ KL T EKK LV++VKL+QKR +EG  GGWK+FL  YDKK GSSLSDPARRS D L +
Sbjct:     1 MEHKLATAEKKLLVDLVKLVQKRGLEGENGGWKEFLNVYDKKLGSSLSDPARRSNDVLVA 60

Query:    61 FLKTFTKEDDLKFIAKVVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMF 120
             FL TF K++DL+ IA+V+Q   NR+L+E+ K+ +PD E+PEQRLVRLT+ H  YP  Y F
Sbjct:    61 FLLTFKKKEDLQLIARVMQCGANRELIEKFKQETPDKETPEQRLVRLTITHDDYPGNYTF 120

Query:   121 PSSDEGWLVTKLGKS-SKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELV 179
             PS  E W VT+LGK  SK + S  M ++DCEMV CEDGS+ LVR+  VDR+LKV +D+ V
Sbjct:   121 PSYAEDWYVTELGKKKSKVIKSTRMLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFV 180

Query:   180 KPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLD 239
             KP+K V DY+++ITG+TA+DL   T S+A+IQK++++ LS GTILVGH L+NDL+VL++D
Sbjct:   181 KPDKPVIDYKTDITGVTAEDLERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRID 240

Query:   240 HPRVIDTSLIFKYVD--EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAII 297
             H RVIDTS +F++VD  + +RPSL NLCKSVLG E+R  G  HNC+ DA+AAMKLVLA +
Sbjct:   241 HARVIDTSYVFEFVDAPKTQRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAV 300

Query:   298 ERRVDNAV-PLLQEDVAETER---------ARLFLHRIPTKVPSEELHGVIPGDFTIEAK 347
             E+     + P  +  VAE  R         A+LFLH+IP  VPSEELHGV+ G+FT+  K
Sbjct:   301 EKGAATLIQPTEEMMVAEKRRQEARQEAGKAQLFLHKIPHDVPSEELHGVLSGNFTLVVK 360
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004527 "exonuclease activity" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0016592 "mediator complex" evidence=IDA
TAIR|locus:2083163 SDN1 "small RNA degrading nuclease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169717 SDN2 "small RNA degrading nuclease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083153 AT3G50090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC637.09 SPAC637.09 "ribonuclease H70 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
WB|WBGene00015462 C05C8.5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BR93 LOC427001 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P5D1 LOC427001 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ASPGD|ASPL0000067196 AN7566 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IX06 REXO1L1 "Exonuclease GOR" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
SDN3
SDN3 (SMALL RNA DEGRADING NUCLEASE 3); exonuclease/ nucleic acid binding; SMALL RNA DEGRADING NUCLEASE 3 (SDN3); FUNCTIONS IN- exonuclease activity, nucleic acid binding; LOCATED IN- intracellular; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- RNA recognition motif, RNP-1 (InterPro-IPR000504), Exonuclease (InterPro-IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro-IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro-IPR013520); BEST Arabidopsis thaliana protein match is- SDN1 (SMALL RNA DEGRADING NUC [...] (782 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT3G21350
RNA polymerase transcriptional regulation mediator-related; RNA polymerase transcriptional regu [...] (298 aa)
    ••  0.960
AT1G44910
protein binding; protein binding; FUNCTIONS IN- protein binding; INVOLVED IN- biological_proces [...] (958 aa)
   • •  0.951
FIB2
FIB2 (FIBRILLARIN 2); snoRNA binding; encodes a fibrillarin, a key nucleolar protein in eukaryo [...] (320 aa)
   • •  0.930
AT3G10690
DNA gyrase subunit A family protein; DNA gyrase subunit A family protein; FUNCTIONS IN- DNA top [...] (950 aa)
   • •  0.907
BIP2
BIP2; ATP binding; luminal binding protein (BiP) ; Probably plays a role in facilitating the as [...] (668 aa)
     •  0.899
AT5G41910
RNA polymerase II mediator complex protein-related; RNA polymerase II mediator complex protein- [...] (186 aa)
     •  0.899
BIP1
BIP1; ATP binding; Encodes the luminal binding protein BiP, an ER-localized member of the HSP70 [...] (669 aa)
     •  0.899
AT5G19910
SOH1 family protein; SOH1 family protein; FUNCTIONS IN- RNA polymerase II transcription mediato [...] (196 aa)
     •  0.899
AT5G03500
transcription coactivator; transcription coactivator; FUNCTIONS IN- transcription coactivator a [...] (168 aa)
     •  0.899
AT5G03220
transcriptional co-activator-related; transcriptional co-activator-related; FUNCTIONS IN- trans [...] (168 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
cd06145150 cd06145, REX1_like, DEDDh 3'-5' exonuclease domain 2e-67
cd06144152 cd06144, REX4_like, DEDDh 3'-5' exonuclease domain 4e-39
cd06137161 cd06137, DEDDh_RNase, DEDDh 3'-5' exonuclease doma 4e-34
smart00479169 smart00479, EXOIII, exonuclease domain in DNA-poly 4e-29
cd06149157 cd06149, ISG20, DEDDh 3'-5' exonuclease domain of 5e-20
pfam00929161 pfam00929, RNase_T, Exonuclease 3e-18
cd06143174 cd06143, PAN2_exo, DEDDh 3'-5' exonuclease domain 6e-11
cd06127159 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain fam 4e-10
COG0847243 COG0847, DnaQ, DNA polymerase III, epsilon subunit 3e-07
cd06130156 cd06130, DNA_pol_III_epsilon_like, an uncharacteri 1e-05
pfam01612172 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 6e-05
PRK07740244 PRK07740, PRK07740, hypothetical protein; Provisio 9e-05
COG2176 1444 COG2176, PolC, DNA polymerase III, alpha subunit ( 1e-04
TIGR01405 1213 TIGR01405, polC_Gram_pos, DNA polymerase III, alph 1e-04
cd06141170 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain o 1e-04
PRK06310250 PRK06310, PRK06310, DNA polymerase III subunit eps 2e-04
TIGR00573217 TIGR00573, dnaq, exonuclease, DNA polymerase III, 0.002
>gnl|CDD|99848 cd06145, REX1_like, DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information 
 Score =  208 bits (532), Expect = 2e-67
 Identities = 72/151 (47%), Positives = 102/151 (67%), Gaps = 2/151 (1%)

Query: 145 YAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 204
           +A+DCEM    DG E L R+ VVD N KV +DELVKP+  + DY +  +G+T + L  VT
Sbjct: 1   FALDCEMCYTTDGLE-LTRVTVVDENGKVVLDELVKPDGEIVDYNTRFSGITEEMLENVT 59

Query: 205 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYR-RPSLYN 263
            +L ++QK++  L+S  TILVGHSL NDL+ LKL HPRVIDT+++F +      +PSL N
Sbjct: 60  TTLEDVQKKLLSLISPDTILVGHSLENDLKALKLIHPRVIDTAILFPHPRGPPYKPSLKN 119

Query: 264 LCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 294
           L K  LG +I++    H+ ++DA AA++LV 
Sbjct: 120 LAKKYLGRDIQQGEGGHDSVEDARAALELVK 150

This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T. Length = 150
>gnl|CDD|99847 cd06144, REX4_like, DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>gnl|CDD|99840 cd06137, DEDDh_RNase, DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>gnl|CDD|214685 smart00479, EXOIII, exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>gnl|CDD|99852 cd06149, ISG20, DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>gnl|CDD|216200 pfam00929, RNase_T, Exonuclease Back     alignment and domain information
>gnl|CDD|99846 cd06143, PAN2_exo, DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 Back     alignment and domain information
>gnl|CDD|176648 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>gnl|CDD|223916 COG0847, DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|99834 cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>gnl|CDD|216604 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease Back     alignment and domain information
>gnl|CDD|236085 PRK07740, PRK07740, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>gnl|CDD|176653 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>gnl|CDD|180525 PRK06310, PRK06310, DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>gnl|CDD|129663 TIGR00573, dnaq, exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 360
KOG2248380 consensus 3'-5' exonuclease [Replication, recombin 100.0
cd06143174 PAN2_exo DEDDh 3'-5' exonuclease domain of the euk 100.0
cd06145150 REX1_like DEDDh 3'-5' exonuclease domain of RNA ex 100.0
KOG2249280 consensus 3'-5' exonuclease [Replication, recombin 100.0
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 100.0
cd06149157 ISG20 DEDDh 3'-5' exonuclease domain of Interferon 100.0
cd06144152 REX4_like DEDDh 3'-5' exonuclease domain of RNA ex 100.0
PRK05711240 DNA polymerase III subunit epsilon; Provisional 99.97
TIGR01406225 dnaQ_proteo DNA polymerase III, epsilon subunit, P 99.97
PRK09146239 DNA polymerase III subunit epsilon; Validated 99.96
PRK07740244 hypothetical protein; Provisional 99.96
PRK06310250 DNA polymerase III subunit epsilon; Validated 99.95
PRK06309232 DNA polymerase III subunit epsilon; Validated 99.95
PRK07247195 DNA polymerase III subunit epsilon; Validated 99.95
PRK09145202 DNA polymerase III subunit epsilon; Validated 99.95
cd06131167 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl 99.95
smart00479169 EXOIII exonuclease domain in DNA-polymerase alpha 99.95
PRK07942232 DNA polymerase III subunit epsilon; Provisional 99.95
PRK06807313 DNA polymerase III subunit epsilon; Validated 99.95
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 99.94
PRK07983219 exodeoxyribonuclease X; Provisional 99.94
cd06136177 TREX1_2 DEDDh 3'-5' exonuclease domain of three pr 99.94
PRK08517257 DNA polymerase III subunit epsilon; Provisional 99.94
cd06130156 DNA_pol_III_epsilon_like an uncharacterized bacter 99.94
PRK06063313 DNA polymerase III subunit epsilon; Provisional 99.94
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 99.94
PRK07748207 sporulation inhibitor KapD; Provisional 99.93
PRK06195309 DNA polymerase III subunit epsilon; Validated 99.93
TIGR01298200 RNaseT ribonuclease T. in gamma-subdivision Proteo 99.93
cd06134189 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. 99.93
PRK05168211 ribonuclease T; Provisional 99.93
PRK07883 557 hypothetical protein; Validated 99.93
PRK07246 820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.93
PRK05601377 DNA polymerase III subunit epsilon; Validated 99.92
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 99.92
PRK06722281 exonuclease; Provisional 99.92
TIGR01407 850 dinG_rel DnaQ family exonuclease/DinG family helic 99.91
PRK08074 928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.91
COG0847243 DnaQ DNA polymerase III, epsilon subunit and relat 99.91
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 99.91
cd06133176 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o 99.91
cd06127159 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh 99.91
cd06138183 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o 99.91
PRK09182294 DNA polymerase III subunit epsilon; Validated 99.89
PF00929164 RNase_T: Exonuclease; InterPro: IPR013520 This ent 99.88
PRK05359181 oligoribonuclease; Provisional 99.86
cd06135173 Orn DEDDh 3'-5' exonuclease domain of oligoribonuc 99.85
PRK11779 476 sbcB exonuclease I; Provisional 99.85
PRK00448 1437 polC DNA polymerase III PolC; Validated 99.84
PTZ00315 582 2'-phosphotransferase; Provisional 99.82
KOG3242208 consensus Oligoribonuclease (3'->5' exoribonucleas 99.42
COG1949184 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA 99.37
cd05160199 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain 99.06
cd06139193 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease 98.95
KOG0542280 consensus Predicted exonuclease [Replication, reco 98.86
COG5018210 KapD Inhibitor of the KinA pathway to sporulation, 98.8
COG2925 475 SbcB Exonuclease I [DNA replication, recombination 98.73
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 98.64
cd0612596 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas 98.5
PRK05755 880 DNA polymerase I; Provisional 98.48
cd06146193 mut-7_like_exo DEDDy 3'-5' exonuclease domain of C 98.36
cd00007155 35EXOc 3'-5' exonuclease. The 35EXOc domain is res 98.17
cd05780195 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom 98.16
cd06129161 RNaseD_like DEDDy 3'-5' exonuclease domain of RNas 98.04
PF13482164 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 98.01
cd05781188 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of 97.94
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 97.91
PRK10829 373 ribonuclease D; Provisional 97.77
cd05779204 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai 97.53
PF04857262 CAF1: CAF1 family ribonuclease; InterPro: IPR00694 97.47
smart00474172 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo 97.42
cd05785207 DNA_polB_like2_exo Uncharacterized bacterial subgr 97.35
cd06142178 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon 97.34
COG0349 361 Rnd Ribonuclease D [Translation, ribosomal structu 97.33
cd06148197 Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro 97.32
TIGR01388 367 rnd ribonuclease D. This model describes ribonucle 97.31
cd05784193 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of 97.17
cd05777230 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain 96.99
cd05783204 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of 96.51
cd06140178 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' 96.3
cd05782208 DNA_polB_like1_exo Uncharacterized bacterial subgr 96.29
PF10108209 DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate 96.08
cd05778231 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease 96.02
COG0749 593 PolA DNA polymerase I - 3'-5' exonuclease and poly 95.95
cd09018150 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease 95.9
smart00486 471 POLBc DNA polymerase type-B family. DNA polymerase 95.46
PRK05762 786 DNA polymerase II; Reviewed 95.18
KOG4793318 consensus Three prime repair exonuclease [Replicat 95.17
PTZ00166 1054 DNA polymerase delta catalytic subunit; Provisiona 95.1
cd06147192 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y 95.04
cd05776234 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas 95.03
COG3359278 Predicted exonuclease [DNA replication, recombinat 94.72
PF03104325 DNA_pol_B_exo1: DNA polymerase family B, exonuclea 94.08
TIGR00593 887 pola DNA polymerase I. This family is based on the 93.84
TIGR00592 1172 pol2 DNA polymerase (pol2). This family is based o 91.57
PHA02570220 dexA exonuclease; Provisional 89.79
PHA02528 881 43 DNA polymerase; Provisional 89.65
COG0417 792 PolB DNA polymerase elongation subunit (family B) 86.29
KOG0304239 consensus mRNA deadenylase subunit [RNA processing 80.31
>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=7.9e-44  Score=353.05  Aligned_cols=301  Identities=35%  Similarity=0.449  Sum_probs=264.7

Q ss_pred             CcchhhhHHHHHHHHHHHHHhhccccCCCCchhhHhhhhccccCC-CCCCCCcC--c-hHHHHHHhhccCcchhhHHHHH
Q 018152            1 MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGS-SLSDPARR--S-KDALSSFLKTFTKEDDLKFIAK   76 (360)
Q Consensus         1 ~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~k~~l~~~~~~~~~-~~~d~~~~--~-~~~l~~f~~~~~~~~~~~~~~~   76 (360)
                      |...++++++.+++..++..|+.++.+.+|.||.||+.|.+..+. +.++|+..  . ...+..|..+....+..+++++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~  149 (380)
T KOG2248|consen   70 SLVAEGNAPKIVLLSKPELKQKDYLLSFSGLSKAILNLVATNLKDVDRSDKALLPRPCSRCGSEFYVTEKGREFKDLLCK  149 (380)
T ss_pred             HHHHhccCceeeeeccchhhhhhheeccCCccHHHhhhhhcccccccccCccccCchhhhhhhhhccccchhhhhhhhcc
Confidence            345677888889999999999999999999999999999999984 77777766  3 5678889888887666566777


Q ss_pred             HHHHhhhHHHHHHHHhhCCCCCChhHHHHHhhhcCCCCccccCCCCCCCCceEeccCCC-CCCCCCCcEEEEEEeccCCC
Q 018152           77 VVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMFPSSDEGWLVTKLGKS-SKTMTSNIMYAVDCEMVLCE  155 (360)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~t~~~~~~~~~y~~p~~~~~~~~t~~~~~-~~~~~~~~~ValD~Ettgl~  155 (360)
                      +.+...++......+++.....++.+.++..+..++.|...+.+|+....|+....+.. .......+++||||||+.++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~i~AlDCEm~~te  229 (380)
T KOG2248|consen  150 YHPGKLIREPRRGFKDKTEDCCTPKEGLVSFLCLGPDYHVEILFPSESLDEFVQTLGAKGKAVSKSPNIFALDCEMVVTE  229 (380)
T ss_pred             ccccccccchhccccccCchhhcccccCccceeecccccccccCccccccceecccccCCCCCCCCCCeEEEEeeeeeec
Confidence            77766777777777777777778999999988889999889999988766666655533 34567789999999999999


Q ss_pred             CCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhhCCCEEEEEcchhhHHH
Q 018152          156 DGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEV  235 (360)
Q Consensus       156 ~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~~g~iLVGHnl~fDl~~  235 (360)
                      .| .+++||++||.+++++||.+|+|..+|.||.|+++|||++|++++++++++||.+|+.+++.++|||||++++||++
T Consensus       230 ~g-~el~RVt~VD~~~~vi~D~fVkP~~~VvDy~T~~SGIT~~~~e~~t~tl~dvq~~l~~~~~~~TILVGHSLenDL~a  308 (380)
T KOG2248|consen  230 NG-LELTRVTAVDRDGKVILDTFVKPNKPVVDYNTRYSGITEEDLENSTITLEDVQKELLELISKNTILVGHSLENDLKA  308 (380)
T ss_pred             cc-eeeEEeeeeeccCcEEeEEeecCCCcccccccccccccHHHHhcCccCHHHHHHHHHhhcCcCcEEEeechhhHHHH
Confidence            99 67999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcccCCCccchHHHhhHhCC--CCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 018152          236 LKLDHPRVIDTSLIFKYVDE--YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVD  302 (360)
Q Consensus       236 L~~~~~~viDT~~l~~~~~~--~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~g~~  302 (360)
                      |++.|+.||||+.+|.+..+  ..+.||+.||+.|||+.||++-.+|+|.+||.|||+|+..+++.+..
T Consensus       309 LKl~H~~ViDTa~lf~~~~g~~~~k~sLk~L~~~~L~~~Iq~~~~~HdS~eDA~acm~Lv~~k~~~~~~  377 (380)
T KOG2248|consen  309 LKLDHPSVIDTAVLFKHPTGPYPFKSSLKNLAKSYLGKLIQEGVGGHDSVEDALACMKLVKLKIKNSES  377 (380)
T ss_pred             HhhhCCceeeeeEEEecCCCCccchHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999998887  47788999999999999995445899999999999999988877654

>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 Back     alignment and domain information
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information
>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PRK05711 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>PRK09146 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07740 hypothetical protein; Provisional Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06309 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07247 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK09145 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK06807 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>PRK07983 exodeoxyribonuclease X; Provisional Back     alignment and domain information
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins Back     alignment and domain information
>PRK08517 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PRK07748 sporulation inhibitor KapD; Provisional Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01298 RNaseT ribonuclease T Back     alignment and domain information
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T Back     alignment and domain information
>PRK05168 ribonuclease T; Provisional Back     alignment and domain information
>PRK07883 hypothetical protein; Validated Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06722 exonuclease; Provisional Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins Back     alignment and domain information
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins Back     alignment and domain information
>PRK09182 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III Back     alignment and domain information
>PRK05359 oligoribonuclease; Provisional Back     alignment and domain information
>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins Back     alignment and domain information
>PRK11779 sbcB exonuclease I; Provisional Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>PTZ00315 2'-phosphotransferase; Provisional Back     alignment and domain information
>KOG3242 consensus Oligoribonuclease (3'->5' exoribonuclease) [RNA processing and modification] Back     alignment and domain information
>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification] Back     alignment and domain information
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases Back     alignment and domain information
>KOG0542 consensus Predicted exonuclease [Replication, recombination and repair] Back     alignment and domain information
>COG5018 KapD Inhibitor of the KinA pathway to sporulation, predicted exonuclease [General function prediction only] Back     alignment and domain information
>COG2925 SbcB Exonuclease I [DNA replication, recombination, and repair] Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information
>cd00007 35EXOc 3'-5' exonuclease Back     alignment and domain information
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A Back     alignment and domain information
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>PRK10829 ribonuclease D; Provisional Back     alignment and domain information
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase Back     alignment and domain information
>PF04857 CAF1: CAF1 family ribonuclease; InterPro: IPR006941 CAF1 is an RNase of the DEDD superfamily, and a subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation Back     alignment and domain information
>smart00474 35EXOc 3'-5' exonuclease Back     alignment and domain information
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>TIGR01388 rnd ribonuclease D Back     alignment and domain information
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases Back     alignment and domain information
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase Back     alignment and domain information
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases Back     alignment and domain information
>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins Back     alignment and domain information
>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase Back     alignment and domain information
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] Back     alignment and domain information
>cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins Back     alignment and domain information
>smart00486 POLBc DNA polymerase type-B family Back     alignment and domain information
>PRK05762 DNA polymerase II; Reviewed Back     alignment and domain information
>KOG4793 consensus Three prime repair exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information
>cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins Back     alignment and domain information
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase Back     alignment and domain information
>COG3359 Predicted exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included Back     alignment and domain information
>TIGR00593 pola DNA polymerase I Back     alignment and domain information
>TIGR00592 pol2 DNA polymerase (pol2) Back     alignment and domain information
>PHA02570 dexA exonuclease; Provisional Back     alignment and domain information
>PHA02528 43 DNA polymerase; Provisional Back     alignment and domain information
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0304 consensus mRNA deadenylase subunit [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
1wlj_A189 Human Isg20 Length = 189 6e-13
>pdb|1WLJ|A Chain A, Human Isg20 Length = 189 Back     alignment and structure 
Iteration: 1

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 10/171 (5%)
Query: 146 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 204
           A+DCEMV L      GL R  +V+ +  V  D+ ++PE  + DYR+ ++G+T   +VG T
Sbjct: 9   AMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGAT 68
Query: 205 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTS---LIFK--YVDEYR 257
              A  +  + +LL  G ++VGH L +D + LK D     + DTS   L+++   +D  R
Sbjct: 69  -PFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCR 126
Query: 258 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLL 308
           R SL  L + +L   I+     H+ ++DA A M+L       R    +P L
Sbjct: 127 RVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRARRGLPRL 177

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
1wlj_A189 Interferon stimulated gene 20KDA; exoribonuclease, 9e-54
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
2xri_A224 ERI1 exoribonuclease 3; hydrolase, metal binding; 2e-08
1w0h_A204 3'-5' exonuclease ERI1; nuclease domain, hydrolase 9e-08
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 2e-07
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 3e-07
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 4e-07
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 6e-07
1y97_A238 Three prime repair exonuclease 2; TREX2, hydrolase 1e-06
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 2e-06
3cg7_A308 CRN-4, cell death-related nuclease 4; hydrolase, a 1e-05
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 7e-05
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Length = 189 Back     alignment and structure
 Score =  174 bits (443), Expect = 9e-54
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 10/183 (5%)

Query: 144 MYAVDCEMVLCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVG 202
           + A+DCEMV      E GL R  +V+ +  V  D+ ++PE  + DYR+ ++G+T   +VG
Sbjct: 7   VVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 66

Query: 203 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKY-----VDE 255
            T   A  +  + +LL  G ++VGH L +D + LK D     + DTS          +D 
Sbjct: 67  AT-PFAVARLEILQLLK-GKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDH 124

Query: 256 YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAET 315
            RR SL  L + +L   I+     H+ ++DA A M+L       R    +P L     E 
Sbjct: 125 CRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRARRGLPRLAVSDLEH 184

Query: 316 ERA 318
              
Sbjct: 185 HHH 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Length = 224 Back     alignment and structure
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Length = 204 Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Length = 242 Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Length = 299 Back     alignment and structure
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Length = 186 Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Length = 349 Back     alignment and structure
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Length = 238 Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Length = 314 Back     alignment and structure
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Length = 308 Back     alignment and structure
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Length = 208 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
1wlj_A189 Interferon stimulated gene 20KDA; exoribonuclease, 100.0
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 99.97
2gui_A194 DNA polymerase III epsilon subunit; DNA polymerase 99.96
1w0h_A204 3'-5' exonuclease ERI1; nuclease domain, hydrolase 99.95
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 99.95
1y97_A238 Three prime repair exonuclease 2; TREX2, hydrolase 99.94
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 99.94
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 99.93
2igi_A180 Oligoribonuclease; RNAse, exoribonuclease, exonucl 99.93
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 99.93
2xri_A224 ERI1 exoribonuclease 3; hydrolase, metal binding; 99.93
2gbz_A194 Oligoribonuclease; ORN, deddh, structural genomics 99.93
3cg7_A308 CRN-4, cell death-related nuclease 4; hydrolase, a 99.92
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 99.92
3tr8_A186 Oligoribonuclease; transcription, hydrolase; 2.50A 99.92
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 99.92
2qxf_A 482 Exodeoxyribonuclease I; alpha-beta domain, DNAQ su 99.9
2kfn_A 605 Klenow fragment of DNA polymerase I; complex (poly 98.97
4hec_A190 Putative uncharacterized protein; ssgcid, structur 98.89
1x9m_A 698 DNA polymerase; DNA ploymerase, N-2-acetylaminoflu 98.81
4dfk_A 540 DNA polymerase I, thermostable; DNA polymerase, tr 98.3
3saf_A428 Exosome component 10; exoribonuclease, RNA exosome 98.09
1qht_A 775 Protein (DNA polymerase); archaea, hyperthermostab 97.91
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 97.7
1noy_A388 Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas 97.65
4gmj_B285 CCR4-NOT transcription complex subunit 7; mRNA dec 97.62
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 97.62
1yt3_A 375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 97.49
3pv8_A 592 DNA polymerase I; DNA polymerase I, protein-DNA co 97.42
2hbj_A410 Exosome complex exonuclease RRP6; RNA metabolism, 97.16
3iay_A 919 DNA polymerase delta catalytic subunit; protein-DN 97.12
2d5r_A252 CCR4-NOT transcription complex subunit 7; poly(A) 96.98
1s5j_A 847 DNA polymerase I; replication, disulfide bonds, tr 96.8
1uoc_A289 POP2; hydrolase, DEDD nuclease, mRNA degradation, 96.55
2p51_A333 SPCC18.06C protein; DEDD nuclease fold, hydrolase, 96.52
3cym_A 440 Uncharacterized protein BAD_0989; structural genom 96.51
3qex_A 903 DNA polymerase, GP43; difluorotoluene nucleoside; 96.39
2gv9_A 1193 DNA polymerase; polymerase alpha fold, transferase 96.34
3k59_A 786 POL II, DNA polymerase II; protein-DNA complex, DN 95.97
2a1r_A430 Poly(A)-specific ribonuclease PARN; DEDD, nuclease 95.81
3d45_A507 Poly(A)-specific ribonuclease PARN; CAP analogue, 95.73
2py5_A 575 DNA polymerase; protein-DNA complex, replication, 85.43
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
Probab=100.00  E-value=6.8e-33  Score=249.72  Aligned_cols=157  Identities=32%  Similarity=0.459  Sum_probs=136.4

Q ss_pred             CCcEEEEEEeccCCCCCc-ccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhh
Q 018152          141 SNIMYAVDCEMVLCEDGS-EGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS  219 (360)
Q Consensus       141 ~~~~ValD~Ettgl~~g~-~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~  219 (360)
                      ..++|+|||||||+++.. .+|++|++|+.+|+++|++||+|..+|+++++++||||++||+++| ++.+|+++|.+++ 
T Consensus         4 ~~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~-~~~~v~~~~~~~l-   81 (189)
T 1wlj_A            4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGAT-PFAVARLEILQLL-   81 (189)
T ss_dssp             --CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCE-EHHHHHHHHHHHH-
T ss_pred             CCeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCC-CHHHHHHHHHHHH-
Confidence            457999999999998765 4789999999999989999999999999999999999999999999 9999999999999 


Q ss_pred             CCCEEEEEcchhhHHHHcccCCC--ccchHHHhh--H--hCC-CCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHH
Q 018152          220 NGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFK--Y--VDE-YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL  292 (360)
Q Consensus       220 ~g~iLVGHnl~fDl~~L~~~~~~--viDT~~l~~--~--~~~-~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL  292 (360)
                      ++++|||||+.||++||+..+++  ++||+.+++  +  ..+ ..+++|+.||+.++|++++.++.+|+|++||++|++|
T Consensus        82 ~~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l  161 (189)
T 1wlj_A           82 KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMEL  161 (189)
T ss_dssp             TTSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHH
Confidence            89999999999999999999886  799998754  2  223 4789999999777899987422389999999999999


Q ss_pred             HHHHHHh
Q 018152          293 VLAIIER  299 (360)
Q Consensus       293 ~~~~l~~  299 (360)
                      |+++++.
T Consensus       162 ~~~l~~~  168 (189)
T 1wlj_A          162 YQISQRI  168 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Back     alignment and structure
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* Back     alignment and structure
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Back     alignment and structure
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Back     alignment and structure
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Back     alignment and structure
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Back     alignment and structure
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii} Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* Back     alignment and structure
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Back     alignment and structure
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis} Back     alignment and structure
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Back     alignment and structure
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... Back     alignment and structure
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Back     alignment and structure
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Back     alignment and structure
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Back     alignment and structure
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} Back     alignment and structure
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Back     alignment and structure
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... Back     alignment and structure
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Back     alignment and structure
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9 Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Back     alignment and structure
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9 Back     alignment and structure
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A Back     alignment and structure
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Back     alignment and structure
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ... Back     alignment and structure
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Back     alignment and structure
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Back     alignment and structure
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A Back     alignment and structure
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus} Back     alignment and structure
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 360
d1wlja_173 c.55.3.5 (A:) Interferon-stimulated gene 20 kDa pr 5e-15
d3b6oa1226 c.55.3.5 (A:9-234) Three prime repair exonuclease 2e-06
d1w0ha_200 c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapien 2e-06
d1y97a1228 c.55.3.5 (A:1-228) Three prime repair exonuclease 9e-05
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Length = 173 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Interferon-stimulated gene 20 kDa protein, ISG20
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 5e-15
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 10/173 (5%)

Query: 144 MYAVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVG 202
           + A+DCEMV L      GL R  +V+ +  V  D+ ++PE  + DYR+ ++G+T      
Sbjct: 2   VVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVT--PQHM 59

Query: 203 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR------VIDTSLIF-KYVDE 255
           V  +   + +     L  G ++VGH L +D + LK D           D  L     +D 
Sbjct: 60  VGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDH 119

Query: 256 YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLL 308
            RR SL  L + +L   I+     H+ ++DA A M+L       R    +P L
Sbjct: 120 CRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRARRGLPRL 172
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 226 Back     information, alignment and structure
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 200 Back     information, alignment and structure
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
d1wlja_173 Interferon-stimulated gene 20 kDa protein, ISG20 { 100.0
d2guia1174 N-terminal exonuclease domain of the epsilon subun 99.94
d3b6oa1226 Three prime repair exonuclease 1, TREX1 {Mouse (Mu 99.91
d1y97a1228 Three prime repair exonuclease 2, TREX2 {Human (Ho 99.89
d1w0ha_200 Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960 99.84
d2f96a1202 Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287 99.73
d2qxfa1 467 Exonuclease I {Escherichia coli K12 (Escherichia c 99.72
d2igia1180 Oligoribonuclease {Escherichia coli [TaxId: 562]} 99.52
d1kfsa1195 Exonuclease domain of prokaryotic DNA polymerase { 98.84
d1yt3a3193 Ribonuclease D, catalytic domain {Escherichia coli 98.75
d2hbka2292 Exosome complex exonuclease RRP6 {Baker's yeast (S 98.28
d1x9ma1204 Exonuclease domain of T7 DNA polymerase {Bacteriop 98.28
d2d5ra1252 CCR4-NOT transcription complex subunit 7, CAF1 {Hu 98.26
d2hhva1171 Exonuclease domain of prokaryotic DNA polymerase { 98.21
d1vk0a_206 Hypothetical protein AT5G06450 {Thale-cress (Arabi 97.95
d1tgoa1347 Exonuclease domain of family B DNA polymerases {Ar 97.41
d1uoca_286 Pop2 RNase D domain {Baker's yeast (Saccharomyces 96.65
d1s5ja1410 Exonuclease domain of family B DNA polymerases {Su 96.26
d1q8ia1388 Exonuclease domain of family B DNA polymerases {Es 95.9
d1noya_372 Exonuclease domain of family B DNA polymerases {Ba 93.64
d1ih7a1375 Exonuclease domain of family B DNA polymerases {Ba 92.81
d2py5a1183 Exonuclease domain of phi29 DNA polymerase {Bacter 85.82
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Interferon-stimulated gene 20 kDa protein, ISG20
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-33  Score=243.81  Aligned_cols=153  Identities=31%  Similarity=0.444  Sum_probs=135.5

Q ss_pred             cEEEEEEeccCCCCCcccE-EEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhhCC
Q 018152          143 IMYAVDCEMVLCEDGSEGL-VRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNG  221 (360)
Q Consensus       143 ~~ValD~Ettgl~~g~~~I-~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~~g  221 (360)
                      .+|||||||||++++.+++ ..+++|+.+|.+++|+||+|..+|+++++++||||++|+.+++ ++++++++|.+++ ++
T Consensus         1 ~~v~iD~EttGl~~~~~~ii~~~~iv~~~g~~i~~~~v~p~~~i~~~~~~i~GIt~e~~~~~~-~~~~~~~~~~~~~-~~   78 (173)
T d1wlja_           1 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGAT-PFAVARLEILQLL-KG   78 (173)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCE-EHHHHHHHHHHHH-TT
T ss_pred             CEEEEEEEcCCCCCCCCcEEEEEEEEEecCeEEEEEeeecccccCcceeEEecCcchhhhcCC-cHHHHHHHHHhhc-cc
Confidence            4899999999999887765 4689999999999999999999999999999999999999999 9999999999999 89


Q ss_pred             CEEEEEcchhhHHHHcccCCC------ccchHHHhhHhCC-CCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHH
Q 018152          222 TILVGHSLNNDLEVLKLDHPR------VIDTSLIFKYVDE-YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL  294 (360)
Q Consensus       222 ~iLVGHnl~fDl~~L~~~~~~------viDT~~l~~~~~~-~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~  294 (360)
                      .++||||+.||++||+...++      .+||..+++...+ .++++|+.||+.+++.+++.++.+|+|++||++|++||+
T Consensus        79 ~~lv~hn~~fD~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~i~~~~~~H~Al~Da~at~~l~~  158 (173)
T d1wlja_          79 KLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQ  158 (173)
T ss_dssp             SEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHH
T ss_pred             ceEEeechHhHHHHHHHhhccCcccchhHHHHHHHHHhhcccCCcCHHHHHHHHhCCcccCCCCCCChHHHHHHHHHHHH
Confidence            999999999999999998664      5788888888777 678999999999999998765568999999999999997


Q ss_pred             HHH
Q 018152          295 AII  297 (360)
Q Consensus       295 ~~l  297 (360)
                      .+.
T Consensus       159 ~~~  161 (173)
T d1wlja_         159 ISQ  161 (173)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Back     information, alignment and structure
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Back     information, alignment and structure
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} Back     information, alignment and structure
>d2py5a1 c.55.3.5 (A:5-187) Exonuclease domain of phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} Back     information, alignment and structure