Citrus Sinensis ID: 018351

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MFTCIACTKQMAEGGEEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISGYRQCKPCTGSSSYKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVYSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSTYTRLGSARESPMSSSMNREWTPRNHYKPSGFDPHYNAGSSTYGGGGPRYEATSMDPSRTTTSSRDEPSVSVSNASEVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEEEcccccccEEEEEEEHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEEcccccEEEEEEEEcHHcccHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccEEEEEEEccccccccEEEEEcHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccEEEEEEEccccccEEEEEEEcHHHccHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MFTCIACTKQMaeggeeveggargsgtpstKEAVKSLTAQIKDMAIKisgyrqckpctgsssykkgqrpypdydmasegvpypylgggsssstpawdftsagrhptgrsdtrfmgvysddrtprgldtasvqscdvvlededepkewmaqvepgvhitflslpnggndlkRIRFSREMFNKWQAQRWWGENYDRIMELYNVQrfnrqalntpprsedeprdstytrlgsarespmsssmnrewtprnhykpsgfdphynagsstyggggpryeatsmdpsrtttssrdepsvsvsnaseveaewveqdepgvYITIRQLADGSRELRRVRFSrerfgevnakTWWEENRERIQAQYL
Flexible Loop (DISEMBL)
mftciactkqmaeggeeveggargsgtpstKEAVKSLTAQIKDMAikisgyrqckpctgsssykkgqrpyPDYDMASEGVPYPYLGGGSSSSTPAWDFTSagrhptgrsdtrfmgvysddrtprgldtasvqsCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFnrqalntpprsedeprdstytrlgsarespmsssmnreWTPRNHYKPSGFDPHYNAGSSTYGGGGPRYEATsmdpsrtttssrdepsvsvsnaseveaewveqdepgvYITIRqladgsrelrrvrfsrerfgevnaktwweenreriqaqyl
Low Complexity Region (SEG)
MFTCIACTKQMAeggeeveggargsgTPSTKEAVKSLTAQIKDMAIKISGYRQCKPCTGSSSYKKGQRPYPDYDMASEGVPYPYLgggssssTPAWDFTSAGRHPTGRSDTRFMGVYSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSTYTRLGSARESPMSSSMNREWTPRNHYKPSGFDPHYNAGSSTYGGGGPRYEATSMDPSRTTTSSRDEPsvsvsnaseveaewveQDEPGVYITIRQLADgsrelrrvrfsrerfgevNAKTWWEENRERIQAQYL
Disordered region (IsUnstruct)
****************************************IKDMAIKISGYRQCK******************************************************************************CDVVL*******EWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFN**************************************************************************************************WVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWE***********
Disordered Region (DISOPRED)
MFTCIAC****************************SLTAQIKDMAIK****************************************************************************************************MAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYN*********************************************************************************************************EQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL
Disordered Region (DISEMBL)
MFTCIACTKQMA********************AVKSLTAQIKDMAIKISGYRQCKPCTGSSSYKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVYSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQAL*********************************WTPRNHYKPSGFDPHYNAGSSTYGGGGPRYEA**************************EAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL
Disordered Region (DISPRO)
MFTCIACTKQ********************KEAVKSLTAQIKDMAIKISGYRQCKPC**************************************************************************************PKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQ**************************************************************************************************EAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTCIACTKQMAEGGEEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISGYRQCKPCTGSSSYKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVYSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSTYTRLGSARESPMSSSMNREWTPRNHYKPSGFDPHYNAGSSTYGGGGPRYEATSMDPSRTTTSSRDEPSVSVSNASEVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	357	2.2.26 [Sep-21-2011]
Q17TI5	344	Protein BREVIS RADIX OS=A	yes	no	0.952	0.988	0.689	1e-138
O82281	331	Protein Brevis radix-like	no	no	0.918	0.990	0.663	1e-118
Q8GYL9	374	Protein Brevis radix-like	no	no	0.952	0.909	0.485	7e-87
Q5HZ09	370	Protein Brevis radix-like	no	no	0.929	0.897	0.465	7e-82
Q6YUB8	397	Protein Brevis radix-like	yes	no	0.949	0.853	0.448	1e-75
Q8GZ92	384	Protein Brevis radix-like	no	no	0.963	0.895	0.448	7e-74
Q6ZIK7	411	Protein Brevis radix-like	no	no	0.966	0.839	0.444	2e-72
Q84T65	329	Protein Brevis radix-like	no	no	0.773	0.838	0.463	2e-65
Q7XPT0	213	Putative protein Brevis r	no	no	0.515	0.863	0.396	2e-29
Q2QWK1	323	Putative protein Brevis r	no	no	0.148	0.164	0.518	2e-09

>sp|Q17TI5|BRX_ARATH Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2

 Score =  493 bits (1269), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/361 (68%), Positives = 296/361 (81%), Gaps = 21/361 (5%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCTG 59
           MF+CIACTK  A+GGEEVE GARG  TP+TKEAVKSLT QIKDMA+K SG Y+QCKPCTG
Sbjct: 1   MFSCIACTK--ADGGEEVEHGARGGTTPNTKEAVKSLTIQIKDMALKFSGAYKQCKPCTG 58

Query: 60  SSS--YKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVY 117
           SSS   KKG R +PDYD ASEGVPYP++GG S+ STPAWDFT++  HP GR +++F  +Y
Sbjct: 59  SSSSPLKKGHRSFPDYDNASEGVPYPFMGG-SAGSTPAWDFTNSSHHPAGRLESKFTSIY 117

Query: 118 SDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSRE 177
            +DR     ++ S QSCDVVL+D D PKEWMAQVEPGVHITF SLP GGNDLKRIRFSRE
Sbjct: 118 GNDR-----ESISAQSCDVVLDD-DGPKEWMAQVEPGVHITFASLPTGGNDLKRIRFSRE 171

Query: 178 MFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEP-RDSTYTRLGSARESPMS 236
           MF+KWQAQRWWGENYD+I+ELYNVQRFNRQAL TP RS+D+  RDSTY+++ SARES   
Sbjct: 172 MFDKWQAQRWWGENYDKIVELYNVQRFNRQALQTPARSDDQSQRDSTYSKMDSARES--- 228

Query: 237 SSMNREWTPRNHYKPSGFDPHYNAGSSTYGGGGPRYEATSMDPSRTTTSSRDEPSVSVSN 296
               ++WTPR++++P G  PH+  G S+  G G  +    MD +RTTTSSRD+P  S+SN
Sbjct: 229 ----KDWTPRHNFRPPGSVPHHFYGGSSNYGPGSYHGGPPMDAARTTTSSRDDPP-SMSN 283

Query: 297 ASEVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQY 356
           ASE++AEW+E+DEPGVYITIRQL+DG+RELRRVRFSRERFGEV+AKTWWE+NRERIQ QY
Sbjct: 284 ASEMQAEWIEEDEPGVYITIRQLSDGTRELRRVRFSRERFGEVHAKTWWEQNRERIQTQY 343

Query: 357 L 357
           L
Sbjct: 344 L 344

Acts as a regulator of cell proliferation and elongation in the root and shoot. Probable transcription regulator. Regulated by the auxin response factor ARF5. Polarly localized in vascular cells and subject to endocytic recycling. Required for CPD expression and for correct nuclear auxin response. Mediates cross-talk between the auxin and brassinosteroid pathways. BRX is a target for auxin-induced, proteasome-mediated degradation.
Arabidopsis thaliana (taxid: 3702)

>sp|O82281|BRXL1_ARATH Protein Brevis radix-like 1 OS=Arabidopsis thaliana GN=BRXL1 PE=2 SV=2

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/360 (66%), Positives = 274/360 (76%), Gaps = 32/360 (8%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCTG 59
           MFTCI CTK    G E+ E  ARGS TP+TKEAVKSLT QIKDMA K SG ++Q KP  G
Sbjct: 1   MFTCINCTKMADRGEEDEEDEARGSTTPNTKEAVKSLTTQIKDMASKFSGSHKQSKPTPG 60

Query: 60  SSSYKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVYSD 119
           SSS     R +PD+D ASE VPYPY  GGS+SSTPAWD   +  H +GR D+RF  +Y  
Sbjct: 61  SSS--SNLRKFPDFDTASESVPYPY-PGGSTSSTPAWDLPRSSYHQSGRPDSRFTSMYGG 117

Query: 120 DRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMF 179
           +R     ++ S QSCDVVLED DEPKEWMAQVEPGVHITF+SLP+GGNDLKRIRFSRE+F
Sbjct: 118 ER-----ESISAQSCDVVLED-DEPKEWMAQVEPGVHITFVSLPSGGNDLKRIRFSREVF 171

Query: 180 NKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEP-RDSTYTRLGSARESPMSSS 238
           +KWQAQRWWGENYDRI+ELYNVQRFNRQAL TP RSED+  RDSTYTR+ SARES     
Sbjct: 172 DKWQAQRWWGENYDRIVELYNVQRFNRQALQTPGRSEDQSQRDSTYTRIDSARES----- 226

Query: 239 MNREWTPR-NHYKPSGFDPHYNAGSSTYGGGGPRYEATSMDPSRTTTSSRDEPSVSVSNA 297
             R+WT R N+++P G       GS  +   GP      MD +R TTSSRDEP  S+SNA
Sbjct: 227 --RDWTQRDNNFRPPG-------GSVPHHFYGP-----PMDAARITTSSRDEPP-SMSNA 271

Query: 298 SEVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 357
           SE++ EWVE+DEPGVYITIRQL DG+RELRRVRFSRERFGEV+AKTWWE+NR+RIQ QYL
Sbjct: 272 SEMQGEWVEEDEPGVYITIRQLPDGTRELRRVRFSRERFGEVHAKTWWEQNRDRIQTQYL 331

May act as a regulator of cell proliferation and elongation in the root.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYL9|BRXL2_ARATH Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1

 Score =  320 bits (821), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 190/391 (48%), Positives = 245/391 (62%), Gaps = 51/391 (13%)

Query: 1   MFTCIACTKQMA--EGGEEVEGGA-----RGSGTPSTKEAVKSLTAQIKDMAIKISG-YR 52
           M TCIACTKQ+    GG + +        R   TP +K+ +KSLT+QIKDMA+K SG Y+
Sbjct: 1   MLTCIACTKQLNTNNGGSKKQEEDEEEEDRVIETPRSKQ-IKSLTSQIKDMAVKASGAYK 59

Query: 53  QCKPCTGSSSYKKGQRPYPDYDMASEG--VPYPYLGGGSSSSTPAWDFTSAGRHPTGRSD 110
            CKPC+GSS+  K  R Y D D+AS      Y Y   GS SSTP       G+      +
Sbjct: 60  SCKPCSGSSNQNKN-RSYADSDVASNSGRFRYAYKRAGSGSSTPKI----LGKE----ME 110

Query: 111 TRFMGVYSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLK 170
           +R  G  S + TP  +   +  +  V +E+EDE KEW+AQVEPGV ITF+SLP GGND+K
Sbjct: 111 SRLKGFLSGEGTPESMSGRTEST--VFMEEEDELKEWVAQVEPGVLITFVSLPEGGNDMK 168

Query: 171 RIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQA--LNTPPRSEDEPRDSTYTRLG 228
           RIRFSREMF+KWQAQ+WW EN+D++MELYNVQ+FN+Q+  L TPPRSED       +R+ 
Sbjct: 169 RIRFSREMFDKWQAQKWWAENFDKVMELYNVQQFNQQSVPLPTPPRSED-----GSSRIQ 223

Query: 229 SARESPMSSSMNREWTPRNHYKPSGFDPHY-----------NAGSSTY----GGGGPRYE 273
           S +  P +  +N+E +    Y  SG   H            ++G +T        G + E
Sbjct: 224 STKNGPATPPLNKECSRGKGYASSGSLAHQPTTQTQSRHHDSSGLATTPKLSSISGTKTE 283

Query: 274 ATSMDPSRTTTSSRDE-------PSVSVSNASEVEAEWVEQDEPGVYITIRQLADGSREL 326
            +S+D S  ++ SR+E         +SVSNAS++E EWVEQDE GVYITIR L DG+REL
Sbjct: 284 TSSVDESARSSFSREEEEADHSGEELSVSNASDIETEWVEQDEAGVYITIRALPDGTREL 343

Query: 327 RRVRFSRERFGEVNAKTWWEENRERIQAQYL 357
           RRVRFSRE+FGE NA+ WWE+NR RIQ QYL
Sbjct: 344 RRVRFSREKFGETNARLWWEQNRARIQQQYL 374

Arabidopsis thaliana (taxid: 3702)

>sp|Q5HZ09|BRXL3_ARATH Protein Brevis radix-like 3 OS=Arabidopsis thaliana GN=BRXL3 PE=2 SV=2

 Score =  304 bits (778), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 184/395 (46%), Positives = 245/395 (62%), Gaps = 63/395 (15%)

Query: 1   MFTCIACTKQMA--EGG----EEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISG-YRQ 53
           M TCIACTKQ+    GG    E+ E G    GTP TK+A+KSLT+Q+KDMA+K SG Y+ 
Sbjct: 1   MLTCIACTKQLNTNNGGSTREEDEEHGV--IGTPRTKQAIKSLTSQLKDMAVKASGAYKN 58

Query: 54  CKPCTGSSSYKKGQRPYPDYDMASEG--VPYPYLGGGSSSSTP-AWDFTSAGRHPTGRSD 110
           CKPC+G+++ +   R Y D D AS+     Y Y   G+++STP  W             +
Sbjct: 59  CKPCSGTTN-RNQNRNYADSDAASDSGRFHYSYQRAGTATSTPKIWG---------NEME 108

Query: 111 TRFMGVYSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLK 170
           +R  G+ S++ TP  +   S ++  +V  ++DE KEW+AQVEPGV ITF+SLP GGNDLK
Sbjct: 109 SRLKGISSEEGTPTSM---SGRTESIVFMEDDEVKEWVAQVEPGVLITFVSLPQGGNDLK 165

Query: 171 RIRF--------------------------SREMFNKWQAQRWWGENYDRIMELYNVQRF 204
           RIRF                           REMFNKWQAQ+WW EN++++MELYNVQ F
Sbjct: 166 RIRFRSTRFPYYRDQLLLWCRQGWVFWPQNCREMFNKWQAQKWWVENFEKVMELYNVQ-F 224

Query: 205 NRQA--LNTPPRSEDEPRDSTYTRLGSARESPMSSSMNREWTPRNHYKPSGFDPHYNAGS 262
           N+Q+  L TPP SED       +++ S ++SP++  + RE   RN    SGF       S
Sbjct: 225 NQQSVPLQTPPVSED-----GGSQIQSVKDSPVTPPLERERPHRNIPGSSGFASTPKLSS 279

Query: 263 STYGGGGPRYEATSMDPSRTTTSSRDEPSVSVSNASEVEAEWVEQDEPGVYITIRQLADG 322
            +    G + E +S+D S  ++S      VSVSNAS++E+EWVEQDEPG+YITIR L DG
Sbjct: 280 IS----GTKTETSSIDGSARSSSVDRSEEVSVSNASDMESEWVEQDEPGIYITIRALPDG 335

Query: 323 SRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 357
           +RELRRVRFSR++FGE +A+ WWE+NR RIQ QYL
Sbjct: 336 NRELRRVRFSRDKFGETHARLWWEQNRARIQQQYL 370

Arabidopsis thaliana (taxid: 3702)

>sp|Q6YUB8|BRXL1_ORYSJ Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica GN=BRXL1 PE=2 SV=1

 Score =  283 bits (724), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 186/415 (44%), Positives = 229/415 (55%), Gaps = 76/415 (18%)

Query: 1   MFTCIACTKQMAEGGEEVE---------GGARGSG---TPSTKEAVKSLTAQIKDMAIKI 48
           M TCIAC+KQ+A G   +            ARG+G   TPST++A+K+LTAQIKDMA+K 
Sbjct: 1   MLTCIACSKQLAGGAPPLREQSDDADDAAVARGAGECATPSTRQAIKALTAQIKDMALKA 60

Query: 49  SG-YRQCKPCTGSSSYK-----KGQRPYPDY-DMASEGVPYPYL----GGGSSSSTPAWD 97
           SG YR CKPC GSSS       +   PY  Y D  S+   Y Y     GG ++ S  A  
Sbjct: 61  SGAYRHCKPCAGSSSSSPAAGARRHHPYHAYADSGSDRFHYAYRRAGSGGDATPSVSART 120

Query: 98  FTSAGRHPTGRSDTRFMGVYSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHI 157
              AG       +    G  +D                    ++DE KEW+AQVEPGV I
Sbjct: 121 DFLAGDEEEEEEEEEEEGTTADG------------------SEDDEAKEWVAQVEPGVLI 162

Query: 158 TFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQA-LNTPPRSE 216
           TFLSLP GGNDLKRIRFSRE+FNKWQAQRWW ENY+++MELYNVQRFN+Q  L T P+SE
Sbjct: 163 TFLSLPEGGNDLKRIRFSREIFNKWQAQRWWAENYEKVMELYNVQRFNQQTPLPTTPKSE 222

Query: 217 DEPRDSTYTRLGSARESPMSSSMNREWT---PRNHYKPSGFDPHYNAGS----------- 262
           DE                +  +++R  T      + +P      +N G+           
Sbjct: 223 DESLKEDIPATPPLNSERLPHTLHRSLTGGRTTGYGQPDSLGHQHNLGNGHRQQHHHCYT 282

Query: 263 --STYGG------------GGPRYEATSMDPSRTTTSSRDEP------SVSVSNASEVEA 302
               YG              G + E +SMD S  ++SS +E       SVSVSNAS+ E 
Sbjct: 283 GHQCYGSVGLASTPKLSSISGAKTETSSMDASMRSSSSPEEVDRSRELSVSVSNASDQER 342

Query: 303 EWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 357
           EWVE+DEPGVYITIR L  G RELRRVRFSRE+F E++A+ WWEENR RI  QYL
Sbjct: 343 EWVEEDEPGVYITIRALPGGIRELRRVRFSREKFSEMHARLWWEENRARIHDQYL 397

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GZ92|BRXL4_ARATH Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1

 Score =  277 bits (709), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 178/397 (44%), Positives = 233/397 (58%), Gaps = 53/397 (13%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCTG 59
           M TCIA +K+    G+E  G       P +K A KSLT+Q+KDMA+K SG YR C PCT 
Sbjct: 1   MLTCIARSKR---AGDESSGQP---DDPDSKNA-KSLTSQLKDMALKASGAYRHCTPCTA 53

Query: 60  SSSYKKGQRPYPDYDMASEGVP--------YPYLGGGSSSSTPAWDFTSAGRHPTGRS-- 109
           +    +GQ P  + + +S  V         +  L G S+SS  A    +A +    R   
Sbjct: 54  AQGQGQGQGPIKN-NPSSSSVKSDFESDQRFKMLYGRSNSSITATAAVAATQQQQPRVWG 112

Query: 110 ---DTRFMGVYSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGG 166
              + R  G+ S + TP+   +   +   +V  +E EPKEW+AQVEPGV ITF+SLP GG
Sbjct: 113 KEMEARLKGISSGEATPKSA-SGRNRVDPIVFVEEKEPKEWVAQVEPGVLITFVSLPGGG 171

Query: 167 NDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQA--LNTPPRSEDEPRDSTY 224
           NDLKRIRFSR+MFNK QAQRWW +NYD++MELYNVQ+ +RQA  L TPPRSEDE     Y
Sbjct: 172 NDLKRIRFSRDMFNKLQAQRWWADNYDKVMELYNVQKLSRQAFPLPTPPRSEDENAKVEY 231

Query: 225 TRLGSARESPMSSSMNREWTPRNHYKPSGFDPHYNAGSSTY-----------GGGGPRYE 273
                  ++P +  +N+E  PR  ++P G   + ++ S  +           G      +
Sbjct: 232 ----HPEDTPATPPLNKERLPRTIHRPPGLAAYSSSDSLDHNSMQSQQFYDSGLLNSTPK 287

Query: 274 ATSMDPSRTTTSSRD-------------EPSVSVSNASEVEAEWVEQDEPGVYITIRQLA 320
            +S+  ++T TSS D                +SVSNAS+V+ EWVEQDEPGVYITI+ L 
Sbjct: 288 VSSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNEWVEQDEPGVYITIKVLP 347

Query: 321 DGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 357
            G RELRRVRFSRERFGE++A+ WWEENR RI  QYL
Sbjct: 348 GGKRELRRVRFSRERFGEMHARLWWEENRARIHEQYL 384

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZIK7|BRXL2_ORYSJ Protein Brevis radix-like 2 OS=Oryza sativa subsp. japonica GN=BRXL2 PE=2 SV=1

 Score =  272 bits (696), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 188/423 (44%), Positives = 232/423 (54%), Gaps = 78/423 (18%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISGY--RQCK--- 55
           M  CIAC+ +  +GGE   GG R +   +T  + KSLT+Q+KDM +K SG    Q K   
Sbjct: 1   MLACIACSTK--DGGE---GGHRSA--TATPNSGKSLTSQLKDMVLKFSGSGRHQYKSGG 53

Query: 56  -PCTGSSSYKKGQR--PYPD------YDMASEGVPYPYL-----GGGSSSSTPAWDFTSA 101
            P   +S + +  R   YP       +     G  Y Y+       G+ ++   WD    
Sbjct: 54  SPSLRTSRFHRSSRLAAYPGIIDESGFTSDGAGEAYTYMRTTTASAGARAAPSTWDLPPK 113

Query: 102 GRH----PTGRSDTRFMGVYSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHI 157
             H    P         GV S        D        V+LE++  P+EW AQVEPGV I
Sbjct: 114 VNHRSFQPRVIRSPSASGVPSIGEEDYDDDDDDDDEETVLLEEDRVPREWTAQVEPGVQI 173

Query: 158 TFLSLPNG-GNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQ-ALNTPPRS 215
           TF+S+P G GNDLKRIRFSREMFNKW+AQRWWGENYDR++ELYNVQ F+RQ   +TP  S
Sbjct: 174 TFVSIPGGAGNDLKRIRFSREMFNKWEAQRWWGENYDRVVELYNVQTFSRQQGFSTPTSS 233

Query: 216 EDEP--RDSTYTRLGSARES--------------------PMSSSMNREW---------T 244
            DE   RDS Y+R+GS RES                    P+S + + +           
Sbjct: 234 VDEAMQRDSFYSRVGSTRESPAMMMPPPPPLPSSGAGREHPISRTASSKAQLSSSSSVAA 293

Query: 245 PRNHYKPSGFDP---------HYNAGSSTYGGGGPRYEATSMDPSRTTTSSRDEPSVSVS 295
            R  + PS   P         H+N  +S   G    Y     DPSR TTSSRDE SVS+S
Sbjct: 294 ARPPFYPSTAVPDPSDHVWAHHFNLLNSAAAGPAAPY-----DPSRGTTSSRDEASVSIS 348

Query: 296 NASEVEA-EWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQA 354
           NAS++EA EWVEQDEPGV ITIR+  DG+RELRRVRFSRERFGE  AK WWE+NR+RI A
Sbjct: 349 NASDLEATEWVEQDEPGVSITIREFGDGTRELRRVRFSRERFGEERAKVWWEQNRDRIHA 408

Query: 355 QYL 357
           QYL
Sbjct: 409 QYL 411

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84T65|BRXL4_ORYSJ Protein Brevis radix-like 4 OS=Oryza sativa subsp. japonica GN=BRXL4 PE=3 SV=1

 Score =  249 bits (637), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 171/369 (46%), Positives = 206/369 (55%), Gaps = 93/369 (25%)

Query: 40  QIKDMAIKISGYRQ---------CKPCTG--SSSYKKGQ-RP-YPDYDMASEGVPYPYLG 86
           Q+KDM +K+SG  +           P  G  +S Y+ G  RP     DMA    P  YLG
Sbjct: 3   QLKDMVMKLSGTSRHHGQQRRGGSPPPRGRTTSVYRSGYYRPGMVQDDMAVP--PATYLG 60

Query: 87  GG-----SSSSTPAWDFTSAGRHPTGRSDTRFMGVYSDDRTPRGLDTASVQSCDVVLEDE 141
           GG     S+SSTPAWDF                                          E
Sbjct: 61  GGGTSMSSASSTPAWDFARPA--------------------------------------E 82

Query: 142 DEPKEWMAQVEPGVHITFLSLPNGG-NDLKRIRFSREMFNKWQAQRWWGENYDRIMELYN 200
            E +EW+AQVEPGV ITF+SL  GG NDLKRIRFSREM++KWQAQ+WWGEN +RIMELYN
Sbjct: 83  GEAREWVAQVEPGVQITFVSLAGGGGNDLKRIRFSREMYDKWQAQKWWGENNERIMELYN 142

Query: 201 VQRFNRQALNTPPRSEDEPRDSTYTRLGSARESPMSSSMNREWTPRNHYKPSGFDPHYNA 260
           V+RF+RQ L TPPRS+D  R+S Y+++GS R SP ++      TP      S F    +A
Sbjct: 143 VRRFSRQVLPTPPRSDDGERESFYSQVGSTRGSPAATPSPAPLTPDRVTSWSAFVRPPSA 202

Query: 261 G------------------------------SSTYGGGGPRYEATSMDPSRTTT-SSRDE 289
                                               G  P   + +MD +RTT+ SSRDE
Sbjct: 203 SRQQQQHSFRPLSPPPPSSSNPSERAWQQQQQPQRAGKSPAAASDAMDAARTTSCSSRDE 262

Query: 290 PSVSVSNASEVEA-EWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEEN 348
             VS+SNASE+E  EWV QDEPGVYIT+R+LADG+RELRRVRFSRERF E+NAK WWEEN
Sbjct: 263 --VSISNASELEVTEWVIQDEPGVYITVRELADGTRELRRVRFSRERFAELNAKLWWEEN 320

Query: 349 RERIQAQYL 357
           +ERIQAQYL
Sbjct: 321 KERIQAQYL 329

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XPT0|BRXL3_ORYSJ Putative protein Brevis radix-like 3 OS=Oryza sativa subsp. japonica GN=BRXL3 PE=3 SV=2

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/227 (39%), Positives = 123/227 (54%), Gaps = 43/227 (18%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISG---YRQCKPC 57
           M  CIAC+ +  EGGE+   G+RG+ TP  ++AVKSLT+Q+KDM +K SG   ++  K  
Sbjct: 1   MLACIACSSK--EGGED---GSRGAATPHGRDAVKSLTSQLKDMVLKFSGSNKHQHYKAA 55

Query: 58  T-GSSSYKKG--QRPYPDYDMASEGVPYPYLGGGS---------------SSSTPAWDFT 99
           T GS S++    +RPYP +   S  +     GG +               S+S   WD T
Sbjct: 56  TAGSPSFRSRSYRRPYPGFIDDSAFMTTTRPGGEAYMYTRAAPPPPVRAASTSMATWDMT 115

Query: 100 SAGRHPTGRSDTRFMGVYSDDRTPRGLDTASVQSC-------DVVLEDEDEPKEWMAQVE 152
            +  +   + D          R+P G  T  +QS        DV + ++  P+EW AQVE
Sbjct: 116 RSKSNRGWQQDA--------GRSPGG--TTWIQSIEEEAGADDVTVVEDAVPREWTAQVE 165

Query: 153 PGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELY 199
           PGV ITF++LP GGNDLKRIRFSRE F + +A+ WW  N DRI   Y
Sbjct: 166 PGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QWK1|BRXL5_ORYSJ Putative protein Brevis radix-like 5 OS=Oryza sativa subsp. japonica GN=BRXL5 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 36/54 (66%)

Query: 303 EWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQY 356
           EWVE+ EPGV+IT+        +LR V  SRE+FGEV A+ WWEEN+ R+   Y
Sbjct: 268 EWVEEYEPGVFITVGAYPGHRLQLRCVELSREKFGEVKARVWWEENKARLHHLY 321

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
225427441	360	PREDICTED: protein BREVIS RADIX [Vitis v	0.997	0.988	0.792	1e-158
356559081	349	PREDICTED: protein BREVIS RADIX-like [Gl	0.971	0.994	0.785	1e-157
356558872	349	PREDICTED: protein BREVIS RADIX-like [Gl	0.971	0.994	0.779	1e-153
449456769	361	PREDICTED: protein BREVIS RADIX-like [Cu	0.974	0.963	0.743	1e-153
296088420	343	unnamed protein product [Vitis vinifera]	0.955	0.994	0.768	1e-151
224138368	342	predicted protein [Populus trichocarpa]	0.955	0.997	0.754	1e-149
224071447	337	predicted protein [Populus trichocarpa]	0.935	0.991	0.758	1e-146
147852857	424	hypothetical protein VITISV_007829 [Viti	0.893	0.752	0.776	1e-145
356496443	348	PREDICTED: protein BREVIS RADIX-like [Gl	0.966	0.991	0.727	1e-141
109020194	344	brevis radix [Arabidopsis thaliana]	0.952	0.988	0.692	1e-137

>gi|225427441|ref|XP_002267479.1| PREDICTED: protein BREVIS RADIX [Vitis vinifera]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/361 (79%), Positives = 314/361 (86%), Gaps = 5/361 (1%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSG-TPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCT 58
           M TCI+C+KQ  E G   EG   G+  TPSTKEAVKSLTAQIKDMA+K SG YRQCKPCT
Sbjct: 1   MLTCISCSKQTEEDGRGEEGSGGGARGTPSTKEAVKSLTAQIKDMALKFSGAYRQCKPCT 60

Query: 59  GSSSYKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVYS 118
           GSSSYKKG RPYPD+D  SEGVPYPYL  GSSSSTPAWDFT++  +P   SD+RF GV  
Sbjct: 61  GSSSYKKGHRPYPDFDTISEGVPYPYLRPGSSSSTPAWDFTTSSHNPGAGSDSRFTGVLR 120

Query: 119 DDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREM 178
            D+TP G+ + S QSCDVVLEDEDEPKEWMAQVEPGVHITF+SLP+GGNDLKRIRFSREM
Sbjct: 121 GDQTPGGV-SISAQSCDVVLEDEDEPKEWMAQVEPGVHITFVSLPHGGNDLKRIRFSREM 179

Query: 179 FNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEP-RDSTYTRLGSARESPMSS 237
           FNKWQAQRWWGENYDRIMELYNVQRFNRQAL+TPPRSEDE  RDS+Y+R+GSARESPM+ 
Sbjct: 180 FNKWQAQRWWGENYDRIMELYNVQRFNRQALHTPPRSEDEVNRDSSYSRMGSARESPMTP 239

Query: 238 SMNREWTPRNHYKPSGFDPH-YNAGSSTYGGGGPRYEATSMDPSRTTTSSRDEPSVSVSN 296
           S+N+EW PRN+YKPSG   H YNAGSS YG GGPR E +SMD SRTTTSSRDE SVS+SN
Sbjct: 240 SLNKEWIPRNYYKPSGSKGHQYNAGSSAYGTGGPRGETSSMDASRTTTSSRDEASVSISN 299

Query: 297 ASEVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQY 356
           AS++E EWVEQDEPGVYITIRQLADG+RELRRVRFSRERFGEV+AKTWWEENRERIQAQY
Sbjct: 300 ASDMETEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVHAKTWWEENRERIQAQY 359

Query: 357 L 357
           L
Sbjct: 360 L 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559081|ref|XP_003547830.1| PREDICTED: protein BREVIS RADIX-like [Glycine max]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 282/359 (78%), Positives = 312/359 (86%), Gaps = 12/359 (3%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCTG 59
           MFTCIACTK      ++ EGG+R SGTPSTKEAVKSLT QIKDMA+K SG Y+QCKPCTG
Sbjct: 1   MFTCIACTKT---DDKDEEGGSRESGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTG 57

Query: 60  SSSYKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVYSD 119
           SSSYKKG RPYPD+D  SEGVPYPY+GG SSSSTPAWDFT++  +P GRSD RF G Y  
Sbjct: 58  SSSYKKGHRPYPDFDTISEGVPYPYIGGASSSSTPAWDFTTS-HYPGGRSDPRFAGAYGG 116

Query: 120 DRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMF 179
           DRTPRG D++SV  CDVVLEDEDEPKEWMAQVEPGVHITF+SLPNGGNDLKRIRFSREMF
Sbjct: 117 DRTPRGRDSSSV--CDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMF 174

Query: 180 NKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSTYTRLGSARESPMSSSM 239
           NKWQAQRWWGENYDRIMELYNVQRFN+QALNTPPRSEDE RDS+Y+RL SARESPM+S  
Sbjct: 175 NKWQAQRWWGENYDRIMELYNVQRFNKQALNTPPRSEDEQRDSSYSRLTSARESPMAS-- 232

Query: 240 NREWTPRNHYKPSGFDPHYNAGSSTYGGGGPRYEA-TSMDPSRTTTSSRDEPSVSVSNAS 298
           N++WTPR+HYKPSG   +Y +    +GGG  +Y A  SM+P+R TT+SRDEP  S+SNAS
Sbjct: 233 NKDWTPRSHYKPSGSRGYYPSEPLDHGGGSGQYHAGPSMEPARDTTASRDEP--SISNAS 290

Query: 299 EVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 357
           E+E EWVEQDEPGVYITIRQLADG+RELRRVRFSRERFGEVNAKTWWEENRERIQAQYL
Sbjct: 291 EMETEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558872|ref|XP_003547726.1| PREDICTED: protein BREVIS RADIX-like [Glycine max]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/359 (77%), Positives = 309/359 (86%), Gaps = 12/359 (3%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCTG 59
           MFTCIACTK      ++ EGGAR SGTPSTKEAVKSLT QIKDMA+K SG Y+QCKPCTG
Sbjct: 1   MFTCIACTKT---DDKDEEGGARESGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTG 57

Query: 60  SSSYKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVYSD 119
           SSSYKK  RPYPD+D  SEGVPYPY+GG SSSSTPAWDFT++  +P GRSD RF G +  
Sbjct: 58  SSSYKKEHRPYPDFDTISEGVPYPYIGGASSSSTPAWDFTTS-HYPGGRSDPRFAGAFGG 116

Query: 120 DRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMF 179
           DRTPR  D+ SV  CDVVLEDEDEPKEWMAQVEPGVHITF+SLPNGGNDLKRIRFSREMF
Sbjct: 117 DRTPRARDSTSV--CDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMF 174

Query: 180 NKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSTYTRLGSARESPMSSSM 239
           NKWQAQRWWGENYDRIMELYNVQRFN+QALNTP RSEDE RDS+Y+RL SARESPM+S  
Sbjct: 175 NKWQAQRWWGENYDRIMELYNVQRFNKQALNTPSRSEDEQRDSSYSRLTSARESPMAS-- 232

Query: 240 NREWTPRNHYKPSGFDPHYNAGSSTYGGGGPRYEA-TSMDPSRTTTSSRDEPSVSVSNAS 298
           N++WTPR+HYKPSG   +Y +    +GGGG +Y A  SM+P+R TT+SRDEP  S+SNAS
Sbjct: 233 NKDWTPRSHYKPSGSRGYYPSEPLDHGGGGGQYHAGPSMEPARDTTASRDEP--SISNAS 290

Query: 299 EVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 357
           E+E EWVEQDEPGVYITIRQLADG+RELRRVRFSRERFGEVNAKTWWEENRERIQAQYL
Sbjct: 291 EMETEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456769|ref|XP_004146121.1| PREDICTED: protein BREVIS RADIX-like [Cucumis sativus] gi|449520457|ref|XP_004167250.1| PREDICTED: protein BREVIS RADIX-like [Cucumis sativus]

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/370 (74%), Positives = 311/370 (84%), Gaps = 22/370 (5%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCTG 59
           MFTCIACTKQ  +GGE+  G ARGSGTPSTKEAVKSLT QIKDMA+K SG YRQCKPCTG
Sbjct: 1   MFTCIACTKQTDDGGED--GAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTG 58

Query: 60  SSSYKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVYSD 119
           SSSYKKGQRPYPD+D ASEGVPYPY+GG S+SSTPAWDF    RHP  RSD+RF   Y  
Sbjct: 59  SSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPINRHPHTRSDSRFKAAYRG 118

Query: 120 DRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMF 179
           D+TP G  T  + +CDVVLEDEDEPKEWMAQVEPGVHITF+SLPNGGNDLKRIRF+REMF
Sbjct: 119 DQTPGGDST--ISACDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMF 176

Query: 180 NKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSTYTRLGSARESPMSSSM 239
           NKWQAQRWWGENYDRI ELYNVQRFN+QAL+TPPR+ED  RDS+Y+++G  R+SPM+S+ 
Sbjct: 177 NKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDG-RDSSYSKVG--RDSPMTSA- 232

Query: 240 NREWTPRNHYKPSG-----FDPHYN-------AGSSTYGGGGPRYEATSMDPSRTTTSSR 287
           N++WTPRN YKPSG      D HY+       AGSS Y  G  + + +SM+ SRTTTSSR
Sbjct: 233 NKDWTPRN-YKPSGSKGFPSDQHYDHGNSHPYAGSSAYPAGSVKGDMSSMEASRTTTSSR 291

Query: 288 DEPSVSVSNASEVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEE 347
           DEPS+S+SNAS++EAEWVE+DEPGVYITIRQL DG+RELRRVRFSRERFGE+NAK WWE 
Sbjct: 292 DEPSISISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEMNAKQWWEH 351

Query: 348 NRERIQAQYL 357
           NRERIQAQYL
Sbjct: 352 NRERIQAQYL 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088420|emb|CBI37411.3| unnamed protein product [Vitis vinifera]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 276/359 (76%), Positives = 304/359 (84%), Gaps = 18/359 (5%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSG-TPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCT 58
           M TCI+C+KQ  E G   EG   G+  TPSTKEAVKSLTAQIKDMA+K SG YRQCKPCT
Sbjct: 1   MLTCISCSKQTEEDGRGEEGSGGGARGTPSTKEAVKSLTAQIKDMALKFSGAYRQCKPCT 60

Query: 59  GSSSYKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVYS 118
           GSSSYKKG RPYPD+D  SEGVPYPYL  GSSSSTPAWDFT++  +P   SD+RF GV  
Sbjct: 61  GSSSYKKGHRPYPDFDTISEGVPYPYLRPGSSSSTPAWDFTTSSHNPGAGSDSRFTGVLR 120

Query: 119 DDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREM 178
            D+TP G+ + S QSCDVVLEDEDEPKEWMAQVEPGVHITF+SLP+GGNDLKRIRFSREM
Sbjct: 121 GDQTPGGV-SISAQSCDVVLEDEDEPKEWMAQVEPGVHITFVSLPHGGNDLKRIRFSREM 179

Query: 179 FNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSTYTRLGSARESPMSSS 238
           FNKWQAQRWWGENYDRIMELYNVQRFNRQAL+TPPRSEDE RDS+Y+R+GSARESPM+ S
Sbjct: 180 FNKWQAQRWWGENYDRIMELYNVQRFNRQALHTPPRSEDE-RDSSYSRMGSARESPMTPS 238

Query: 239 MNREWTPRNHYKPSGFDPHYNAGSSTYGGGGPRYEATSMDPSRTTTSSRDEPSVSVSNAS 298
           +N+EW PRN+YKPS              G GPR E +SMD SRTTTSSRDE SVS+SNAS
Sbjct: 239 LNKEWIPRNYYKPS--------------GSGPRGETSSMDASRTTTSSRDEASVSISNAS 284

Query: 299 EVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 357
           ++E EWVEQDEPGVYITIRQLADG+RELRRVRFSRERFGEV+AKTWWEENRERIQAQYL
Sbjct: 285 DMETEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVHAKTWWEENRERIQAQYL 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138368|ref|XP_002326585.1| predicted protein [Populus trichocarpa] gi|222833907|gb|EEE72384.1| predicted protein [Populus trichocarpa]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 270/358 (75%), Positives = 303/358 (84%), Gaps = 17/358 (4%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCTG 59
           MFTCIACTK  AE G   EGGARGSGTPSTKEAVKSLT+QIKDMA+K+SG Y+QCKPCTG
Sbjct: 1   MFTCIACTKPAAEDGRGEEGGARGSGTPSTKEAVKSLTSQIKDMALKMSGAYKQCKPCTG 60

Query: 60  SSSYKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVYSD 119
            SSYKKGQRPYPD+D ASEGVPYPY GGGSSSSTPAWDFT+   H   R+++RF  +Y  
Sbjct: 61  PSSYKKGQRPYPDFDAASEGVPYPYFGGGSSSSTPAWDFTTPSHHRGARAESRFTSLYGG 120

Query: 120 DRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMF 179
           DRTP   ++ S QSCDVVLE++DEPKEWMAQVEPGVHITF+SLPNGGNDLKRIRFSREMF
Sbjct: 121 DRTPGRAESISAQSCDVVLENDDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMF 180

Query: 180 NKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSTYTRLGSARESPMSSSM 239
           NKWQAQRWWGENYDRIMELYNVQRFN+QAL+TPPR EDE RDS+Y+R+ SARESPM+ S 
Sbjct: 181 NKWQAQRWWGENYDRIMELYNVQRFNQQALHTPPRCEDEQRDSSYSRMESARESPMAPS- 239

Query: 240 NREWTPRNHYKPSGFDPHYNAGSSTYGGGGPRYEATSMDPSRTTTSSRDEPSVSVSNASE 299
              +TPRN+YKPSG   ++              +    D SRTTTSSRDEPS+SVSNAS+
Sbjct: 240 ---FTPRNYYKPSGSKGYFPP------------DTMDQDASRTTTSSRDEPSISVSNASD 284

Query: 300 VEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 357
           VEAEWVEQDEPGVYITIRQLADG+RELRRVRFSRE+FGEV+AK+WWE+NRERIQAQYL
Sbjct: 285 VEAEWVEQDEPGVYITIRQLADGTRELRRVRFSREQFGEVHAKSWWEQNRERIQAQYL 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071447|ref|XP_002303464.1| predicted protein [Populus trichocarpa] gi|222840896|gb|EEE78443.1| predicted protein [Populus trichocarpa]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 273/360 (75%), Positives = 302/360 (83%), Gaps = 26/360 (7%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCTG 59
           MFTCIACTK +AE G   EGGARGSGTPSTKEAVKSLT+QIKDMA+K+SG Y+QCKPCT 
Sbjct: 1   MFTCIACTKPVAEDGRGEEGGARGSGTPSTKEAVKSLTSQIKDMALKMSGAYKQCKPCTS 60

Query: 60  SSSYKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVYSD 119
            SSYKKGQRPYPD+D ASEGVPYPY GGGSSSSTPAWDFT+   +   R+D+RF  +Y  
Sbjct: 61  PSSYKKGQRPYPDFDAASEGVPYPYFGGGSSSSTPAWDFTTPKHNRGTRADSRFSTLYGG 120

Query: 120 DRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMF 179
           DRTP G      +SCDVVLEDEDEPKEWMAQVEPGVHITF+SLPNGGNDLKRIRFSREMF
Sbjct: 121 DRTPGG-----AESCDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMF 175

Query: 180 NKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSTYTRLGSARESPMSSSM 239
           NKWQAQRWWGENYDRI ELYNVQRFNRQAL+TPPR EDE RDS+Y+RL SARESPM+ S 
Sbjct: 176 NKWQAQRWWGENYDRITELYNVQRFNRQALHTPPRCEDEQRDSSYSRLESARESPMAPS- 234

Query: 240 NREWTPRNHYKPSGFDPHYNAGSSTYGGGGPRYEATSMD--PSRTTTSSRDEPSVSVSNA 297
              +TPRN+YKP        AGS  Y      + + +MD   SRTTTSSRDEPS+SVSNA
Sbjct: 235 ---FTPRNYYKP--------AGSKGY------FPSDTMDQEASRTTTSSRDEPSISVSNA 277

Query: 298 SEVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 357
           S++E EWVEQDEPGVYITIRQLADG+RELRRVRFSRE+FGEV+AKTWWE+NRERIQAQYL
Sbjct: 278 SDLETEWVEQDEPGVYITIRQLADGTRELRRVRFSREQFGEVHAKTWWEQNRERIQAQYL 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852857|emb|CAN81277.1| hypothetical protein VITISV_007829 [Vitis vinifera]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 260/335 (77%), Positives = 287/335 (85%), Gaps = 16/335 (4%)

Query: 37  LTAQIKDMAIKISG-YRQCKPCTGSSSYKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPA 95
           +   IKDMA+K SG YRQCKPCTGSSSYKKG RPYPD+D  SEGVPYPYL  GSSSSTPA
Sbjct: 92  VLGLIKDMALKFSGAYRQCKPCTGSSSYKKGHRPYPDFDTISEGVPYPYLRPGSSSSTPA 151

Query: 96  WDFTSAGRHPTGRSDTRFMGVYSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGV 155
           WDFT++  +P   SD+RF GV   D+TP G+ + S QSCDVVLEDEDEPKEWMAQVEPGV
Sbjct: 152 WDFTTSSHNPGAGSDSRFTGVLRGDQTPGGV-SISAQSCDVVLEDEDEPKEWMAQVEPGV 210

Query: 156 HITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRS 215
           HITF+SLP+GGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQAL+TPPRS
Sbjct: 211 HITFVSLPHGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALHTPPRS 270

Query: 216 EDEPRDSTYTRLGSARESPMSSSMNREWTPRNHYKPSG------------FDPH-YNAGS 262
           EDE RDS+Y+R+GSARESPM+ S+N+EW PRN+YKPSG            +  H YNAGS
Sbjct: 271 EDE-RDSSYSRMGSARESPMTPSLNKEWIPRNYYKPSGSKGYFPSEPSDQYGSHQYNAGS 329

Query: 263 STYGGGGPRYEATSMDPSRTTTSSRDEPSVSVSNASEVEAEWVEQDEPGVYITIRQLADG 322
           S YG GGPR E +SMD SRTTTSSRDE SVS+SNAS++E EWVEQDEPGVYITIRQLADG
Sbjct: 330 SAYGTGGPRGETSSMDASRTTTSSRDEASVSISNASDMETEWVEQDEPGVYITIRQLADG 389

Query: 323 SRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 357
           +RELRRVRFSRERFGEV+AKTWWEENRERIQAQYL
Sbjct: 390 TRELRRVRFSRERFGEVHAKTWWEENRERIQAQYL 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496443|ref|XP_003517077.1| PREDICTED: protein BREVIS RADIX-like [Glycine max]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/360 (72%), Positives = 301/360 (83%), Gaps = 15/360 (4%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSGTPST-KEAVKSLTAQIKDMAIKISG-YRQCKPCT 58
           MFTCIACTKQ A+  EE       SGTPST KEAVKSL+AQ+KDMA+K SG Y+QCKPCT
Sbjct: 1   MFTCIACTKQAAKEKEE----EGESGTPSTNKEAVKSLSAQLKDMALKFSGAYKQCKPCT 56

Query: 59  GSSSYKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVYS 118
           GSS+YKKGQRPYPD+D  SEGVPYPY+GG SS+STPAWDFTS+      RSD RFMG +S
Sbjct: 57  GSSTYKKGQRPYPDFDTISEGVPYPYIGGASSTSTPAWDFTSSN-FLGARSDQRFMGGFS 115

Query: 119 DDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREM 178
            DRTPRG  +A   +CDVV+EDEDE KEWMAQVEPGVHITF+SLPNGGNDLKRIRFSRE+
Sbjct: 116 GDRTPRGPQSAP--ACDVVVEDEDETKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREI 173

Query: 179 FNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSTYTRLGSARESPMSSS 238
           F+KWQAQ+WWGENYDRIMELYNVQRFNRQALNTP RSEDE RDS+Y+R+ S  +SPM S 
Sbjct: 174 FDKWQAQKWWGENYDRIMELYNVQRFNRQALNTPSRSEDEQRDSSYSRMTSGHDSPMHSM 233

Query: 239 MNREWTPRNHYKPSGFDPHYNAGSSTYGGGGPRYE-ATSMDPSRTTTSSRDEPSVSVSNA 297
             ++WTPRNHYKPSG +P   + +   GGGG  +  A+S++ SRTTTSSRDE   S+SNA
Sbjct: 234 SLKDWTPRNHYKPSGNNP---SEAMDQGGGGQNFHAASSVEASRTTTSSRDE--RSMSNA 288

Query: 298 SEVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 357
           S++E EW+EQDEPGVYITIRQLADG++ELRRVRFSRERFGE +AK WWE+NRERIQAQYL
Sbjct: 289 SDLETEWIEQDEPGVYITIRQLADGTKELRRVRFSRERFGEGHAKKWWEDNRERIQAQYL 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109020194|gb|ABG25053.1| brevis radix [Arabidopsis thaliana]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/361 (69%), Positives = 296/361 (81%), Gaps = 21/361 (5%)

Query: 1   MFTCIACTKQMAEGGEEVEGGARGSGTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCTG 59
           MF+CIACTK  A+GGEEVE GARG  TP+TKEAVKSLT QIKDMA+K SG Y+QCKPCTG
Sbjct: 1   MFSCIACTK--ADGGEEVEHGARGGTTPNTKEAVKSLTIQIKDMALKFSGAYKQCKPCTG 58

Query: 60  SSS--YKKGQRPYPDYDMASEGVPYPYLGGGSSSSTPAWDFTSAGRHPTGRSDTRFMGVY 117
           SSS   KKG R +PDYD ASEGVPYP++GG S+ STPAWDFT++  HP GR +++F  +Y
Sbjct: 59  SSSSPLKKGHRSFPDYDNASEGVPYPFMGG-SAGSTPAWDFTNSSHHPAGRLESKFTSIY 117

Query: 118 SDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSRE 177
            +DR     ++ S QSCDVVL+D D PKEWMAQVEPGVHITF SLP GGNDLKRIRFSRE
Sbjct: 118 GNDR-----ESISAQSCDVVLDD-DGPKEWMAQVEPGVHITFASLPTGGNDLKRIRFSRE 171

Query: 178 MFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEP-RDSTYTRLGSARESPMS 236
           MF+KWQAQRWWGENYD+I+ELYNVQRFNRQAL TP RS+D+  RDSTY+++ SARES   
Sbjct: 172 MFDKWQAQRWWGENYDKIVELYNVQRFNRQALQTPARSDDQSQRDSTYSKMDSARES--- 228

Query: 237 SSMNREWTPRNHYKPSGFDPHYNAGSSTYGGGGPRYEATSMDPSRTTTSSRDEPSVSVSN 296
               ++WTPR++++P G  PH+  G S+  G G  +    MD +RTTTSSRD+P  S+SN
Sbjct: 229 ----KDWTPRHNFRPPGSVPHHFYGGSSNYGPGSYHGGPPMDAARTTTSSRDDPP-SMSN 283

Query: 297 ASEVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQY 356
           ASE++AEW+E+DEPGVYITIRQL+DGSRELRRVRFSRERFGEV+AKTWWE+NRERIQ QY
Sbjct: 284 ASEMQAEWIEEDEPGVYITIRQLSDGSRELRRVRFSRERFGEVHAKTWWEQNRERIQTQY 343

Query: 357 L 357
           L
Sbjct: 344 L 344

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
TAIR|locus:2034486	344	BRX "BREVIS RADIX" [Arabidopsi	0.949	0.985	0.580	7.5e-105
TAIR|locus:2058694	331	BRXL1 "AT2G35600" [Arabidopsis	0.686	0.740	0.607	2.3e-95
TAIR|locus:2014345	370	BRX-LIKE3 "AT1G54180" [Arabido	0.535	0.516	0.384	6.1e-62
TAIR|locus:2088212	374	ATBRXL2 "AT3G14000" [Arabidops	0.761	0.727	0.431	2.1e-52
TAIR|locus:2149897	384	BRXL4 "AT5G20540" [Arabidopsis	0.700	0.651	0.407	1.9e-44
TAIR|locus:2046997	158	AT2G21030 "AT2G21030" [Arabido	0.355	0.803	0.642	4e-42
TAIR|locus:2165770	1073	AT5G42140 "AT5G42140" [Arabido	0.509	0.169	0.309	8.3e-15
TAIR|locus:505006603	1075	AT5G12350 "AT5G12350" [Arabido	0.243	0.080	0.409	8.2e-14
TAIR|locus:2025277	1103	PRAF1 "AT1G76950" [Arabidopsis	0.212	0.068	0.421	3.3e-13
TAIR|locus:2009739	1006	AT1G65920 [Arabidopsis thalian	0.453	0.161	0.305	2.8e-08

TAIR|locus:2034486 BRX "BREVIS RADIX" [Arabidopsis thaliana (taxid:3702)]

 Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
 Identities = 210/362 (58%), Positives = 249/362 (68%)

Query:     1 MFTCIACTKQMAXXXXXXXXXXXXXXTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCTG 59
             MF+CIACTK  A              TP+TKEAVKSLT QIKDMA+K SG Y+QCKPCTG
Sbjct:     1 MFSCIACTK--ADGGEEVEHGARGGTTPNTKEAVKSLTIQIKDMALKFSGAYKQCKPCTG 58

Query:    60 SSS--YKKGQRPYPDYDMASEGVPYPYLXXXXXXXTPAWDFTSAGRHPTGRSDTRFMGVY 117
             SSS   KKG R +PDYD ASEGVPYP++       TPAWDFT++  HP GR +++F  +Y
Sbjct:    59 SSSSPLKKGHRSFPDYDNASEGVPYPFMGGSAGS-TPAWDFTNSSHHPAGRLESKFTSIY 117

Query:   118 SDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSRE 177
              +DR     ++ S QSCDVVL+D D PKEWMAQVEPGVHITF SLP GGNDLKRIRFSRE
Sbjct:   118 GNDR-----ESISAQSCDVVLDD-DGPKEWMAQVEPGVHITFASLPTGGNDLKRIRFSRE 171

Query:   178 MFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEP-RDSTYTRLGSARESPMS 236
             MF+KWQAQRWWGENYD+I+ELYNVQRFNRQAL TP RS+D+  RDSTY+++ SARES   
Sbjct:   172 MFDKWQAQRWWGENYDKIVELYNVQRFNRQALQTPARSDDQSQRDSTYSKMDSARES--- 228

Query:   237 SSMNREWTPRNHYKPSGFDPH-YNAGSSTYGGGGPRYEATSMDPSRTTTSSRDEPXXXXX 295
                 ++WTPR++++P G  PH +  GSS YG G   +    MD +RTTTSSRD+P     
Sbjct:   229 ----KDWTPRHNFRPPGSVPHHFYGGSSNYGPGS-YHGGPPMDAARTTTSSRDDPPSMSN 283

Query:   296 XXXXXXXXXXXQDEPGVYITIRQLADXXXXXXXXXXXXXXXXXXNAKTWWEENRERIQAQ 355
                        +DEPGVYITIRQL+D                  +AKTWWE+NRERIQ Q
Sbjct:   284 ASEMQAEWIE-EDEPGVYITIRQLSDGTRELRRVRFSRERFGEVHAKTWWEQNRERIQTQ 342

Query:   356 YL 357
             YL
Sbjct:   343 YL 344

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0015250 "water channel activity" evidence=ISS

GO:0048364 "root development" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2058694 BRXL1 "AT2G35600" [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
 Identities = 161/265 (60%), Positives = 185/265 (69%)

Query:     1 MFTCIACTKQMAXXXXXXXXXXXXXXTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCTG 59
             MFTCI CTK                 TP+TKEAVKSLT QIKDMA K SG ++Q KP  G
Sbjct:     1 MFTCINCTKMADRGEEDEEDEARGSTTPNTKEAVKSLTTQIKDMASKFSGSHKQSKPTPG 60

Query:    60 SSSYKKGQRPYPDYDMASEGVPYPYLXXXXXXXTPAWDFTSAGRHPTGRSDTRFMGVYSD 119
             SSS     R +PD+D ASE VPYPY        TPAWD   +  H +GR D+RF  +Y  
Sbjct:    61 SSS--SNLRKFPDFDTASESVPYPY-PGGSTSSTPAWDLPRSSYHQSGRPDSRFTSMYGG 117

Query:   120 DRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMF 179
             +R     ++ S QSCDVVLED DEPKEWMAQVEPGVHITF+SLP+GGNDLKRIRFSRE+F
Sbjct:   118 ER-----ESISAQSCDVVLED-DEPKEWMAQVEPGVHITFVSLPSGGNDLKRIRFSREVF 171

Query:   180 NKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEP-RDSTYTRLGSARESPMSSS 238
             +KWQAQRWWGENYDRI+ELYNVQRFNRQAL TP RSED+  RDSTYTR+ SARES     
Sbjct:   172 DKWQAQRWWGENYDRIVELYNVQRFNRQALQTPGRSEDQSQRDSTYTRIDSARES----- 226

Query:   239 MNREWTPR-NHYKPSGFD-PHYNAG 261
               R+WT R N+++P G   PH+  G
Sbjct:   227 --RDWTQRDNNFRPPGGSVPHHFYG 249

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014345 BRX-LIKE3 "AT1G54180" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
 Identities = 85/221 (38%), Positives = 117/221 (52%)

Query:     1 MFTCIACTKQM----AXXXXXXXXXXXXXXTPSTKEAVKSLTAQIKDMAIKISG-YRQCK 55
             M TCIACTKQ+                   TP TK+A+KSLT+Q+KDMA+K SG Y+ CK
Sbjct:     1 MLTCIACTKQLNTNNGGSTREEDEEHGVIGTPRTKQAIKSLTSQLKDMAVKASGAYKNCK 60

Query:    56 PCTGSSSYKKGQRPYPDYDMASEG--VPYPYLXXXXXXXTPA-WDFTSAGRHPTGRSDTR 112
             PC+G+++ +   R Y D D AS+     Y Y        TP  W             ++R
Sbjct:    61 PCSGTTN-RNQNRNYADSDAASDSGRFHYSYQRAGTATSTPKIWG---------NEMESR 110

Query:   113 FMGVYSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRI 172
               G+ S++ TP  +   S ++  +V  ++DE KEW+AQVEPGV ITF+SLP GGNDLKRI
Sbjct:   111 LKGISSEEGTPTSM---SGRTESIVFMEDDEVKEWVAQVEPGVLITFVSLPQGGNDLKRI 167

Query:   173 RFS-------REMFNKWQAQRW--WGENYDRIMELYNVQRF 204
             RF        R+    W  Q W  W +N   +   +  Q++
Sbjct:   168 RFRSTRFPYYRDQLLLWCRQGWVFWPQNCREMFNKWQAQKW 208

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088212 ATBRXL2 "AT3G14000" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 132/306 (43%), Positives = 175/306 (57%)

Query:     1 MFTCIACTKQMAXXXXXXXXXXXXXX-------TPSTKEAVKSLTAQIKDMAIKISG-YR 52
             M TCIACTKQ+                      TP +K+ +KSLT+QIKDMA+K SG Y+
Sbjct:     1 MLTCIACTKQLNTNNGGSKKQEEDEEEEDRVIETPRSKQ-IKSLTSQIKDMAVKASGAYK 59

Query:    53 QCKPCTGSSSYKKGQRPYPDYDMASEG--VPYPYLXXXXXXXTPAWDFTSAGRHPTGRSD 110
              CKPC+GSS+  K  R Y D D+AS      Y Y        TP       G+      +
Sbjct:    60 SCKPCSGSSNQNKN-RSYADSDVASNSGRFRYAYKRAGSGSSTPK----ILGKE----ME 110

Query:   111 TRFMGVYSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLK 170
             +R  G  S + TP  + +   +S  V +E+EDE KEW+AQVEPGV ITF+SLP GGND+K
Sbjct:   111 SRLKGFLSGEGTPESM-SGRTEST-VFMEEEDELKEWVAQVEPGVLITFVSLPEGGNDMK 168

Query:   171 RIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQA--LNTPPRSEDEPRDSTYTRLG 228
             RIRFSREMF+KWQAQ+WW EN+D++MELYNVQ+FN+Q+  L TPPRSED       +R+ 
Sbjct:   169 RIRFSREMFDKWQAQKWWAENFDKVMELYNVQQFNQQSVPLPTPPRSEDGS-----SRIQ 223

Query:   229 SARESPMSSSMNREWTPRNHYKPSG---FDPHYNAGSSTYGGGG--PRYEATSMDPSRTT 283
             S +  P +  +N+E +    Y  SG     P     S  +   G     + +S+  ++T 
Sbjct:   224 STKNGPATPPLNKECSRGKGYASSGSLAHQPTTQTQSRHHDSSGLATTPKLSSISGTKTE 283

Query:   284 TSSRDE 289
             TSS DE
Sbjct:   284 TSSVDE 289

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149897 BRXL4 "AT5G20540" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 113/277 (40%), Positives = 152/277 (54%)

Query:     1 MFTCIACTKQMAXXXXXXXXXXXXXXTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCTG 59
             M TCIA +K+                 P +K A KSLT+Q+KDMA+K SG YR C PCT 
Sbjct:     1 MLTCIARSKRAGDESSGQPDD------PDSKNA-KSLTSQLKDMALKASGAYRHCTPCTA 53

Query:    60 SSSYKKGQRPYPDYDMASE-------GVPYPYLXXXXXXXTPAWDFTSAGRHPTGR---- 108
             +    +GQ P  +   +S           +  L         A    +A +    R    
Sbjct:    54 AQGQGQGQGPIKNNPSSSSVKSDFESDQRFKMLYGRSNSSITATAAVAATQQQQPRVWGK 113

Query:   109 -SDTRFMGVYSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGN 167
               + R  G+ S + TP+     + +   +V  +E EPKEW+AQVEPGV ITF+SLP GGN
Sbjct:   114 EMEARLKGISSGEATPKSASGRN-RVDPIVFVEEKEPKEWVAQVEPGVLITFVSLPGGGN 172

Query:   168 DLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQA--LNTPPRSEDEPRDSTYT 225
             DLKRIRFSR+MFNK QAQRWW +NYD++MELYNVQ+ +RQA  L TPPRSEDE     Y 
Sbjct:   173 DLKRIRFSRDMFNKLQAQRWWADNYDKVMELYNVQKLSRQAFPLPTPPRSEDENAKVEY- 231

Query:   226 RLGSARESPMSSSMNREWTPRNHYKPSGFDPHYNAGS 262
                   ++P +  +N+E  PR  ++P G   + ++ S
Sbjct:   232 ---HPEDTPATPPLNKERLPRTIHRPPGLAAYSSSDS 265

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2046997 AT2G21030 "AT2G21030" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 88/137 (64%), Positives = 106/137 (77%)

Query:   156 HITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRS 215
             HITF SLP GGNDLKRIRFSREM+NKWQAQR WGENYD+I+ELYNVQRFNRQAL TP RS
Sbjct:    13 HITFASLPTGGNDLKRIRFSREMYNKWQAQRRWGENYDKIVELYNVQRFNRQALQTPARS 72

Query:   216 EDEP-RDSTYTRLGSARESPMSSSMNREWTPRNHYKPSGFDPH-YNAGSSTYGGGGPRYE 273
             +D+  RDSTY+++ SARES       ++WTPR++++P G  PH +  GSS YG G   + 
Sbjct:    73 DDQSQRDSTYSKMDSARES-------KDWTPRHNFRPPGSVPHHFYGGSSNYGPGS-YHG 124

Query:   274 ATSMDPSRTTTSSRDEP 290
                MD +RTTTSSRD+P
Sbjct:   125 GPPMDAARTTTSSRDDP 141

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165770 AT5G42140 "AT5G42140" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 8.3e-15, P = 8.3e-15
 Identities = 65/210 (30%), Positives = 100/210 (47%)

Query:    29 STKEAVKSLTAQIKDMAIKI--SGYRQCKPCTGS--SSYKK---------GQRPYPDYDM 75
             + KE +KSLTAQ+KD+A  +    Y      T +  + +++         GQR      M
Sbjct:   871 AAKEVIKSLTAQVKDIAALLPPGAYEAETTRTANLLNGFEQNGFHFTNANGQRQSRSDSM 930

Query:    76 ASEGVPYPYLXXXXXXXTPAWDFTSAGRHPTGR-----SD-TRFMGVYSDD-RTPRGLDT 128
             +   +  P L          W  + + R+         S+  R    +S+D R  R    
Sbjct:   931 SDTSLASP-LAMPARSMNGLWRNSQSPRNTDASMGELLSEGVRISNGFSEDGRNSRS-SA 988

Query:   129 ASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWW 188
             AS  +   V        EW+ Q EPGV+IT L+L +G  DLKR+RFSR  F + QA+ WW
Sbjct:   989 ASASNASQV------EAEWIEQYEPGVYITLLALGDGTRDLKRVRFSRRRFREQQAETWW 1042

Query:   189 GENYDRIMELYNVQRFNRQALNTPPRSEDE 218
              EN +R+ E YN++  +R ++ T P S+ +
Sbjct:  1043 SENRERVYEKYNIRGTDRSSVATSPISQSQ 1072

GO:0003682 "chromatin binding" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

TAIR|locus:505006603 AT5G12350 "AT5G12350" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 8.2e-14, Sum P(2) = 8.2e-14
 Identities = 36/88 (40%), Positives = 56/88 (63%)

Query:   125 GLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQA 184
             G  T +  + +   E  +E KEW+ Q EPGV+IT  +L  G  DLKR+RFSR+ F++ QA
Sbjct:   988 GTMTPAFGNGEATNEARNE-KEWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEIQA 1046

Query:   185 QRWWGENYDRIMELYNVQRFNRQALNTP 212
             ++WW +N  R+ E YNV+  ++ + + P
Sbjct:  1047 EQWWADNRGRVYEQYNVRMVDKASEDLP 1074

GO:0003682 "chromatin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2025277 PRAF1 "AT1G76950" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
 Identities = 32/76 (42%), Positives = 48/76 (63%)

Query:   146 EWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFN 205
             EW+ Q EPGV+IT ++L +G  DL+R+RFSR  F + QA+ WW EN +++ E YNV+   
Sbjct:  1024 EWIEQYEPGVYITLVALHDGTRDLRRVRFSRRRFGEHQAETWWSENREKVYEKYNVRVSE 1083

Query:   206 RQALNTPPRSEDEPRD 221
             +   +   R  DE  +
Sbjct:  1084 KSTASQTHRDRDEEEE 1099

GO:0003682 "chromatin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2009739 AT1G65920 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 54/177 (30%), Positives = 83/177 (46%)

Query:    31 KEAVKSLTAQ--IKDMAIKISGYRQCKPCTGSSSYKKGQRPYPDY--DMASEGVPYPYLX 86
             +EA KS  A+  IK +A K+   ++ KP   S+  K G    P     +  + +  PYL 
Sbjct:   839 EEAEKSKAAKEIIKALASKLQANKE-KP---SNPLKTGIACNPSQVSPIFDDSMSIPYLT 894

Query:    87 XXXXXXTPAWDFTSAGRHPTGRSDTRFMGV-YSDDRTPRGLDTASVQSCDVVLEDEDEPK 145
                   +         +  T +S  R   +    D +P    T  +Q+     E +D   
Sbjct:   895 PITTARSQHETKQHVEKCVT-KSSNRDSNIKLLVDASPAITRTGYLQN-----ETQDSSA 948

Query:   146 EWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQ 202
             E + Q EPGV+ITF +LP G   LKR+RFSR+ F++ +AQRWW E    +   Y+ +
Sbjct:   949 EQVEQYEPGVYITFTALPCGQKTLKRVRFSRKRFSEKEAQRWWEEKQVLVYNKYDAE 1005

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0046872 "metal ion binding" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q17TI5	BRX_ARATH	No assigned EC number	0.6897	0.9523	0.9883	yes	no
Q6YUB8	BRXL1_ORYSJ	No assigned EC number	0.4481	0.9495	0.8539	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	357
pfam08381	59	pfam08381, BRX, Transcription factor regulating ro	1e-30
pfam08381	59	pfam08381, BRX, Transcription factor regulating ro	2e-29
pfam13713	39	pfam13713, BRX_N, Transcription factor BRX N-termi	9e-12
pfam07781	735	pfam07781, Reovirus_Mu2, Reovirus minor core prote	5e-04

>gnl|CDD|203924 pfam08381, BRX, Transcription factor regulating root and shoot growth via Pin3

 Score =  110 bits (277), Expect = 1e-30
 Identities = 33/59 (55%), Positives = 43/59 (72%)

Query: 142 DEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYN 200
               EW+ QVEPGV+IT ++LP+G   LKR+RFSR+ F + QAQRWW EN +R+ E YN
Sbjct: 1   QVKAEWVEQVEPGVYITLVTLPDGTKILKRVRFSRKRFGEKQAQRWWEENKERVYEKYN 59

The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. The family features a short region of alpha-helix, approximately 60 residues in length, which is found repeated up to three times. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action. Length = 59

>gnl|CDD|203924 pfam08381, BRX, Transcription factor regulating root and shoot growth via Pin3

 Score =  107 bits (269), Expect = 2e-29
 Identities = 37/58 (63%), Positives = 48/58 (82%)

Query: 299 EVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQY 356
           +V+AEWVEQ EPGVYIT+  L DG++ L+RVRFSR+RFGE  A+ WWEEN+ER+  +Y
Sbjct: 1   QVKAEWVEQVEPGVYITLVTLPDGTKILKRVRFSRKRFGEKQAQRWWEENKERVYEKY 58

The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. The family features a short region of alpha-helix, approximately 60 residues in length, which is found repeated up to three times. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action. Length = 59

>gnl|CDD|205888 pfam13713, BRX_N, Transcription factor BRX N-terminal domain

 Score = 58.7 bits (143), Expect = 9e-12
 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 21 GARGSGTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCT 58
              +   + KE +KSLTAQ+KDMA K+SG YR CKPC+
Sbjct: 1  AEEAAKCKAAKEVIKSLTAQLKDMAEKLSGAYRNCKPCS 39

The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. This family features a short region, also alpha-helical, N-terminal to the repeated alpha-helices of family BRX, pfam08381. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action. Length = 39

>gnl|CDD|219573 pfam07781, Reovirus_Mu2, Reovirus minor core protein Mu-2

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 105 PTGRSDTRFMGV-YSDDRTPRGLDTASVQSCDVVLEDEDEPKEWMAQVEPGVHITFLSLP 163
           P+     R  G+       PRG++T+ V   D++ +  DEP   +  VE    +T   +P
Sbjct: 265 PSDARAARLSGLRPQAATPPRGINTSIVPVVDLLCQIVDEPDS-LIPVERPTPLTIHGVP 323

This family represents the Reovirus core protein Mu-2. Mu-2 is a microtubule associated protein and is thought to play a key role in the formation and structural organisation of reovirus inclusion bodies. Length = 735

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
PF08381	59	BRX: Transcription factor regulating root and shoo	99.97
PF08381	59	BRX: Transcription factor regulating root and shoo	99.97
PF13713	39	BRX_N: Transcription factor BRX N-terminal domain	99.29

>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members

Probab=99.97  E-value=1e-32  Score=210.85  Aligned_cols=59  Identities=68%  Similarity=1.254  Sum_probs=57.3

Q ss_pred             CCCCceeeeeCCeeEEEEEecCCCCccceEEeehHhhhchHHHHHHHHHhhhhHHhhhc
Q 018351          142 DEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYN  200 (357)
Q Consensus       142 ~~e~EwVeQ~EPGVyITl~~lp~G~~~LKRVRFSR~~F~e~qAq~WW~eN~~rV~e~Yn  200 (357)
                      ++++|||||+||||||||+++|||+|+||||||||++|+++||+.||+||++||+++||
T Consensus         1 q~~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~eN~~rv~e~Yn   59 (59)
T PF08381_consen    1 QEEKEWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEENRDRVYEKYN   59 (59)
T ss_pred             CCCccEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHHHHHHHHHhcC
Confidence            36789999999999999999999999999999999999999999999999999999997

It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.

>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members

Probab=99.97  E-value=5.5e-32  Score=206.82  Aligned_cols=58  Identities=64%  Similarity=1.189  Sum_probs=56.5

Q ss_pred             ccccceEeeeCCceEEEEEEcCCCccceeEEEeehhccchhhHHHHHHHhHhHHHHhc
Q 018351          299 EVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQY  356 (357)
Q Consensus       299 ~~e~EwVEQ~EPGVYITl~~~p~G~r~LKRVRFSR~~F~e~qA~~WW~eN~~RI~e~Y  356 (357)
                      ++++|||||+||||||||+++|||+++||||||||++|+++||+.||+||++||+++|
T Consensus         1 q~~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~eN~~rv~e~Y   58 (59)
T PF08381_consen    1 QEEKEWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEENRDRVYEKY   58 (59)
T ss_pred             CCCccEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHHHHHHHHHhc
Confidence            3689999999999999999999999999999999999999999999999999999999

It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.

>PF13713 BRX_N: Transcription factor BRX N-terminal domain

Probab=99.29  E-value=1.7e-12  Score=92.72  Aligned_cols=35  Identities=57%  Similarity=0.992  Sum_probs=32.2

Q ss_pred             CCCCCchHHHHHHHHHHHHHHhhhhcc-CccccCCC
Q 018351           24 GSGTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCT   58 (357)
Q Consensus        24 ~~~tp~t~~aiKslt~QiKDmalK~Sg-yr~ckp~~   58 (357)
                      ++.++.++|+||+||+|||||++|++| |++|+||+
T Consensus         4 aak~kaaKe~IKsLt~QlK~maekl~~~~~~~k~~~   39 (39)
T PF13713_consen    4 AAKCKAAKEVIKSLTAQLKDMAEKLPGAYRNCKPCS   39 (39)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhCchhhhccCCCC
Confidence            456788999999999999999999999 99999995

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00