Citrus Sinensis ID: 018386

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MGKTTRSQASLERQKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATTSNAGDSVQNRSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPAAQVPLHVDSEKGTRSSKRKAVDVIPILDTPKLFSSKFKVPKLKNSFPHLNVR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHcccccccccEEEEEccccccccccccccccccccccccccccEEcccccccccccEcccccccccccccc
Coil and Loop (DISEMBL)
MGKTTRSQASLERQKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLrqkpkdgepksiEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRksrtasdtpvlnrctriagattsnagdsvqnrsstagikgrlrksgsssvtplsnystttaqslggkngdnvvvnkqmpaaqvplhvdsekgtrsskrkavdvipildtpklfsskfkvpklknsfphlnvr
Flexible Loop (DISEMBL)
mgkttrsqaslerqkrDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVmendltskinskraevDRANERIEKLLAsteqlqlsnnekDETIAKLKTQIAqmetgskkwntEISRLTQELELLrksrtasdtpvlnrCTRIagattsnagdsvqnrsstagikgrlrksgsssvtplsnystttaqslggkNGDNVVVNKQMpaaqvplhvdsekgtrsskrkavdvipildtpklfsskfkvpklknsfphlnvr
Low Complexity Region (SEG)
MGKTTRSQASLERQKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATTSNAGDSVQNRSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPAAQVPLHVDSEKGTRSSKRKAVDVIPILDTPKLFSSKFKVPKLKNSFPHLNVR
Disordered region (IsUnstruct)
********************************TLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQ*********IEVSAFLDERAFLWNQYKVMEND****************************************************************************************************************************************************************************VDVIPILDTPKLF*******************
Disordered Region (DISOPRED)
********************************************LKMQHEKWVSDVR************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*************QKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATT***********STAG****************SNYSTTTAQSLGGKNGDNVVVNKQMPAAQVPLH*************AVDVIPILDTPKLFSSKFKVPKLKNSFPHLNVR
Disordered Region (DISPRO)
**********LERQKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS****************************************************************************************************VIPILDTPKLFSSKFKVPKLKNSF******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKTTRSQASLERQKRDKILVKMxxxxxxxxxxxxxxxxxxxxxLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNNEKDETIAKLKTQIAQMETGxxxxxxxxxxxxxxxxxxxxxRTASDTPVLNRCTRIAGATTSNAGDSVQNRSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPAAQVPLHVDSEKGTRSSKRKAVDVIPILDTPKLFSSKFKVPKLKNSFPHLNVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
224083008	357	predicted protein [Populus trichocarpa]	0.857	0.857	0.430	3e-71
118484708	357	unknown [Populus trichocarpa]	0.857	0.857	0.430	2e-70
359492238	379	PREDICTED: uncharacterized protein LOC10	0.857	0.807	0.396	1e-67
255538940	354	conserved hypothetical protein [Ricinus	0.817	0.824	0.441	1e-65
449437422	365	PREDICTED: uncharacterized protein LOC10	0.843	0.824	0.388	3e-62
297844962	656	hypothetical protein ARALYDRAFT_312926 [	0.789	0.429	0.362	7e-50
449470100	340	PREDICTED: uncharacterized protein LOC10	0.733	0.770	0.385	4e-49
15223725	342	cytomatrix protein-like protein [Arabido	0.792	0.827	0.363	5e-49
8778999	651	Contains a weak similarity to Rap8 (Rac-	0.789	0.433	0.359	6e-48
224065885	277	predicted protein [Populus trichocarpa]	0.652	0.841	0.365	4e-39

>gi|224083008|ref|XP_002306928.1| predicted protein [Populus trichocarpa] gi|222856377|gb|EEE93924.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 169/393 (43%), Positives = 235/393 (59%), Gaps = 87/393 (22%)

Query: 1   MGKTTRSQ-ASLERQKRDKI---LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDV 56
           MG +  +Q  + +R+K DK+   LVK+LKSQQEQ+ETL+KER  LED +K QHE+WVSD+
Sbjct: 1   MGTSNCTQLVTSDREKWDKVFGGLVKLLKSQQEQLETLLKERHFLEDRIKTQHERWVSDI 60

Query: 57  RLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWF 116
           RLYEDHISQ+  ++V +++  +L+AAKSD+++GLK REASL K  LE T+D+LADF AWF
Sbjct: 61  RLYEDHISQINGDLVEKDMACVLEAAKSDLMLGLKQREASLHKSRLEETEDELADFQAWF 120

Query: 117 DLLRQK------------------PKDGEPKSI--------------------EVSAFLD 138
             L Q                    K G  K +                    EVSA L 
Sbjct: 121 SYLSQNLKANSEETANGKGGGSSDMKSGGAKKLEAKVERLKLENEKLVSEKNSEVSALLK 180

Query: 139 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT 198
           E+ F+WNQY ++E++LTSK+ SK AEV++ANE+I ++LA+ E LQ SN+EKDE I +L  
Sbjct: 181 EKTFVWNQYNILESNLTSKLRSKEAEVEKANEKIAEVLATAELLQSSNDEKDEIIRRLNM 240

Query: 199 QIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATTSNAGDSVQNRS 258
           ++A+ME  ++KW  EIS+L+QELE +RKSR+A  T ++  C             S   RS
Sbjct: 241 KVAKMEADAEKWKGEISKLSQELEFIRKSRSAQVTSIMKPC-------------SAPTRS 287

Query: 259 STAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPA---AQVPLHVDSE 315
           S  G+K                          G+N  N +V++++ A   A VP    S+
Sbjct: 288 SNLGVKS------------------------CGRNFSN-LVDRKVSAPILATVP-SKGSD 321

Query: 316 KGTRSSKRKAVDVIPILDTPKLFSSKFKVPKLK 348
           KG+RS K+K +D   IL+TPKLFSS F+VPK+K
Sbjct: 322 KGSRSLKKKRID---ILETPKLFSSTFEVPKVK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484708|gb|ABK94224.1| unknown [Populus trichocarpa]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 169/393 (43%), Positives = 233/393 (59%), Gaps = 87/393 (22%)

Query: 1   MGKTTRSQ-ASLERQKRDKI---LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDV 56
           MG +  +Q  + +R+K DK+   LVK LKSQQEQ+ETL+KER  LED +K QHE+WVSD+
Sbjct: 1   MGTSNCTQLVTSDREKWDKVFGGLVKSLKSQQEQLETLLKERHFLEDRIKTQHERWVSDI 60

Query: 57  RLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWF 116
           RLYEDHISQ+  + V +++  +L+AAKSD+++GLK REASL K  LE T+D+LADF AWF
Sbjct: 61  RLYEDHISQINGDSVEKDMACVLEAAKSDLMLGLKQREASLHKSRLEETEDELADFQAWF 120

Query: 117 DLLRQK------------------PKDGEPKSI--------------------EVSAFLD 138
             L Q                    K G  K +                    EVSA L 
Sbjct: 121 SYLSQNLKANSEETANGKGGGSSDMKSGGAKKLEAKVERLKLENEKLVSEKNSEVSALLK 180

Query: 139 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKT 198
           E+ F+WNQY ++E++LTSK+ SK AEV++ANE+I ++LA+ E LQ SN+EKDE I +L  
Sbjct: 181 EKTFVWNQYNILESNLTSKLRSKEAEVEKANEKIAEVLATAELLQSSNDEKDEIIRRLNM 240

Query: 199 QIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATTSNAGDSVQNRS 258
           ++A+ME  ++KW  EIS+L+QELE +RKSR+A  T ++  C             S   RS
Sbjct: 241 KVAKMEADAEKWKGEISKLSQELEFIRKSRSAQVTSIMKPC-------------SAPTRS 287

Query: 259 STAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPA---AQVPLHVDSE 315
           S  G+K                          G+N  N +V++++ A   A VP    S+
Sbjct: 288 SNLGVKS------------------------CGRNFSN-LVDRKVSAPILATVP-SKGSD 321

Query: 316 KGTRSSKRKAVDVIPILDTPKLFSSKFKVPKLK 348
           KG+RS K+K +D   IL+TPKLFSS F+VPK+K
Sbjct: 322 KGSRSLKKKRID---ILETPKLFSSTFEVPKVK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492238|ref|XP_002279957.2| PREDICTED: uncharacterized protein LOC100259217 [Vitis vinifera] gi|302142661|emb|CBI19864.3| unnamed protein product [Vitis vinifera]

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 164/414 (39%), Positives = 227/414 (54%), Gaps = 108/414 (26%)

Query: 7   SQASLERQKRDKI---LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHI 63
           S  S +RQK  KI   LV ML++QQ Q+E+L KER++LED +K Q+++W+SDV   +D I
Sbjct: 7   SHVSSDRQKWQKIFNALVHMLQTQQTQVESLAKERKLLEDRIKFQYDRWISDVHSLQDQI 66

Query: 64  SQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKP 123
           +QM+ +   QE   L++AAKSD+++GLK RE SL KL LE TDD+L DF    D L  + 
Sbjct: 67  AQMEMKFTVQEKERLVEAAKSDLLMGLKKREVSLCKLKLESTDDELVDFKVLIDFLSHEC 126

Query: 124 KD-------------------------------------GEPK-------------SIEV 133
            D                                     GE +             S EV
Sbjct: 127 LDPNGISKVGDKEKGSRGDNNLKSVKTTKEEEQCAKRLEGEVRKLKWEYENLASRNSAEV 186

Query: 134 SAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETI 193
           SA L E+ F+WNQYK+ME++ ++K+NSK  EV++ANE+I+ LL   EQL+  NNEKD+ I
Sbjct: 187 SALLAEQNFVWNQYKIMESNYSNKLNSKHVEVEQANEKIDNLLVGMEQLESLNNEKDDKI 246

Query: 194 AKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATTSNAGDS 253
            KLKT +A+MET +KK N EISRL++E+ELLRKSR+AS TP+LNRCT             
Sbjct: 247 VKLKTDLAKMETETKKKNEEISRLSKEVELLRKSRSASVTPILNRCTE------------ 294

Query: 254 VQNRSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKN----GDNVVVNKQMPAAQVP 309
              +  T+G                            GKN    G N+ + K+ PA++  
Sbjct: 295 ---KQKTSG---------------------------QGKNKSWIGRNISIKKETPASEKN 324

Query: 310 L---------HVDSEKGTRSSKRKAVDVIPILDTPKLFSSKFKVPKLKNSFPHL 354
                       ++EK +R SKRK ++V P  +TP+LF+S FK+PKLKNS P +
Sbjct: 325 TEKKKESSVSEKNTEKKSRGSKRKEINVTPTSETPRLFTSTFKIPKLKNSSPQI 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538940|ref|XP_002510535.1| conserved hypothetical protein [Ricinus communis] gi|223551236|gb|EEF52722.1| conserved hypothetical protein [Ricinus communis]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 163/369 (44%), Positives = 220/369 (59%), Gaps = 77/369 (20%)

Query: 20  LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLL 79
           LV++LK+QQEQ++TL++ER+ LED +K QHE+W SDVRL EDHISQM   ++ ++L  LL
Sbjct: 16  LVQILKNQQEQLKTLLEERKFLEDRIKSQHERWASDVRLCEDHISQMNDALMEKDLNCLL 75

Query: 80  DAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQ----------KPKDG--- 126
            AAKS++++GLK REASL KL LE T+D+LADF + F+ L Q          K K+G   
Sbjct: 76  QAAKSNLMLGLKHREASLYKLKLEQTEDELADFRSCFNYLSQILEENPKESDKCKEGVED 135

Query: 127 --------------------------EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINS 160
                                       K+ E+SA L E++F+WNQY V+E+ L+ K+ +
Sbjct: 136 SNLRSSGSKRLDNEVKRLKSEYEKLSSEKNSEISALLKEKSFVWNQYNVLESSLSDKLKT 195

Query: 161 KRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQE 220
           K++EVD+AN +I K+LAS E LQ SNNEKDE  +KLK ++ +ME    KW  E SRL QE
Sbjct: 196 KQSEVDQANAKIAKVLASVELLQSSNNEKDEIFSKLKAKLTEMEVDRDKWKEENSRLLQE 255

Query: 221 LELLRKSRTASDTPVLNRCTRIAGATTSNAGDSVQNRSSTAGIKGRLRKSGSSSVTPLSN 280
           LELL+KSR+A  TP L  C   A A++                  R+ KS          
Sbjct: 256 LELLKKSRSAQVTPSLKHCNTGAKASS------------------RVVKSN--------- 288

Query: 281 YSTTTAQSLGGKNGDNVVVNKQM-PAAQVPLHVDSEKGTRSSKRKAVDVIPILDTPKLFS 339
                     G++  NVVV K++ PA   P   D++KG+R SKRK V+ I IL+TPKLFS
Sbjct: 289 ----------GRSRSNVVVKKELCPAKAAPPLKDADKGSRGSKRKEVETITILETPKLFS 338

Query: 340 SKFKVPKLK 348
           + FKVPKLK
Sbjct: 339 ASFKVPKLK 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437422|ref|XP_004136491.1| PREDICTED: uncharacterized protein LOC101222062 [Cucumis sativus] gi|449505782|ref|XP_004162567.1| PREDICTED: uncharacterized LOC101222062 [Cucumis sativus]

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 159/409 (38%), Positives = 220/409 (53%), Gaps = 108/409 (26%)

Query: 1   MGKTTRSQASLERQKRDKI---LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVR 57
           MGK+ RS+ S+ER+   KI   L +ML++QQ Q+ETLV ER++LED +KMQHE+WV+D+R
Sbjct: 1   MGKSDRSKPSIERRNWGKIFNGLTQMLRTQQNQLETLVTERKLLEDRVKMQHERWVADIR 60

Query: 58  LYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFD 117
           LYEDH+SQM+ E+  Q++     A+KSD++ G+K  E  + +L +E+++ +L DF ++FD
Sbjct: 61  LYEDHVSQMRDELFLQDMERSFQASKSDLLAGMKQTELYVCRLKIEHSEAELEDFKSFFD 120

Query: 118 -------------LLRQKPKDGEP------------------------------------ 128
                         LR   +  E                                     
Sbjct: 121 DFIAHKNSKLQESFLRSASEPAEANGGGEGGMSKFGNTDEVRRSEALESEVRRFRSEYEK 180

Query: 129 ----KSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQL 184
               KS EVSA + E  F+WNQY V+E D +SK+ +K +E++RA+ ++E+LLA+ EQLQ 
Sbjct: 181 LASEKSSEVSALVTENKFVWNQYNVIEADYSSKLKNKHSELERAHLKVEELLATLEQLQS 240

Query: 185 SNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAG 244
           SNNEKD+ IA L+ Q+ +MET S K   EISRL+ +LE+ RKS  A+ TPVL  C     
Sbjct: 241 SNNEKDDVIAMLRNQVGKMETDSFKLKDEISRLSHDLEVQRKSVNATATPVLKPC----- 295

Query: 245 ATTSNAGDSVQNRSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNG----DNVVVN 300
                              K  LR SG                 LGGKNG     NV+VN
Sbjct: 296 -------------------KAGLRTSG-----------------LGGKNGSRSRSNVIVN 319

Query: 301 KQMPAAQVPLHVDSEKGTRSSKRKAVDVIPILDTPKLFSSKFKVPKLKN 349
           K   +AQ P H  ++      KR A D I    TP+LF+S FKVPKLKN
Sbjct: 320 KDAYSAQ-PSHSGNQM-----KRGAGD-ISDPGTPRLFTSSFKVPKLKN 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844962|ref|XP_002890362.1| hypothetical protein ARALYDRAFT_312926 [Arabidopsis lyrata subsp. lyrata] gi|297336204|gb|EFH66621.1| hypothetical protein ARALYDRAFT_312926 [Arabidopsis lyrata subsp. lyrata]

 Score =  204 bits (518), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 194/361 (53%), Gaps = 79/361 (21%)

Query: 18  KILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIH 77
           K LVK+L+++Q+Q+E+L+K+R+ILE  +K +HE W+SDVR YED +S M  EI   ++I 
Sbjct: 21  KSLVKILQTKQDQLESLLKDRKILESEIKTKHENWLSDVRNYEDQLSLMMKEIETTKMIQ 80

Query: 78  LLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLR----------------- 120
           LL+ +K +++ GLK ++ SL  L LE+  D+L+DF AWFD L                  
Sbjct: 81  LLETSKCNLLCGLKEKDHSLCNLKLEHAVDELSDFKAWFDFLTLNTNMENESGNSEASAI 140

Query: 121 ------------QKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRA 168
                       +  K    K  EVS  L E  F WNQ+K +E+  T  +  K  E+ +A
Sbjct: 141 KSLEAKIRKLKLEYEKLASEKKCEVSDLLRENGFAWNQFKCIESGFTDTLKRKDDEIAQA 200

Query: 169 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 228
           N +I  L++  EQLQ SN EKDETI++LK ++A+ME  S K + EIS+LT++LE  +KSR
Sbjct: 201 NTKISSLISYQEQLQSSNQEKDETISRLKAKMAEMEVNSTKKDEEISKLTRDLESAKKSR 260

Query: 229 TASDTPVLNRCTRIAGATTSNAGDSVQNRSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQS 288
               TPVL RCT++   T SN G++V                                  
Sbjct: 261 GL--TPVLTRCTKLE--TRSN-GNTV---------------------------------- 281

Query: 289 LGGKNGDNVVVNKQMPAAQVPLHVDSEKGTRSSKRKAVDVIPIL--DTPKLFSSKFKVPK 346
                G ++   K+  AA       +EK ++ SKRK V++ P+   + PKLF+S F++P 
Sbjct: 282 -----GSHISTKKEKVAA----STTNEKVSKRSKRKRVNMTPVSVSEVPKLFTSTFRLPN 332

Query: 347 L 347
           L
Sbjct: 333 L 333

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470100|ref|XP_004152756.1| PREDICTED: uncharacterized protein LOC101210726 [Cucumis sativus] gi|449504076|ref|XP_004162247.1| PREDICTED: uncharacterized LOC101210726 [Cucumis sativus]

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/319 (38%), Positives = 183/319 (57%), Gaps = 57/319 (17%)

Query: 1   MGKTTRSQASLERQKRDKI---LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVR 57
           MG   R ++S +RQ  +KI   LV+ML++QQ+Q+ETLV ER++LED ++MQH++W SD R
Sbjct: 1   MGTIKRLKSSSQRQNWEKIFSALVRMLETQQKQLETLVLERKLLEDRIRMQHDRWTSDSR 60

Query: 58  LYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFD 117
           LYE+ I Q+K E+  +++ H L+A+K D+ + +  R + L ++  E+ +D+L DF   F 
Sbjct: 61  LYENFICQLKGELALRDMEHSLEASKLDLNMSMMQRGSLLRQITSEHANDELQDFKELFS 120

Query: 118 LLRQK-----------------------------------------PKDGEPKSIEVSAF 136
           LL  K                                          K    +S EV+A 
Sbjct: 121 LLYTKITVTPFQDVTSRTFLNSGKSNQRTQNSKALNIEVERLQKAYEKLESERSSEVTAL 180

Query: 137 LDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKL 196
           L E+ F+WNQY +MEND  SK+  +R EV+    +IE LLA+ EQLQ  N+EKD TIA L
Sbjct: 181 LAEKTFVWNQYNLMENDYKSKLRHERTEVELGRTKIENLLANMEQLQSLNDEKDCTIAAL 240

Query: 197 KTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATTSNAGDSVQN 256
           ++++ +ME  S+K N EISR++ E+E+LRK   AS T VLNRCT  +G           N
Sbjct: 241 ESKLEKMEVNSRKLNDEISRISHEMEVLRKHNCASVTSVLNRCT--SG-----------N 287

Query: 257 RSSTAGIKGRLRKSGSSSV 275
           R+   G+K + + SGS+ +
Sbjct: 288 RTFGLGVKEKEKGSGSNII 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223725|ref|NP_173427.1| cytomatrix protein-like protein [Arabidopsis thaliana] gi|28392994|gb|AAO41932.1| unknown protein [Arabidopsis thaliana] gi|28827278|gb|AAO50483.1| unknown protein [Arabidopsis thaliana] gi|332191798|gb|AEE29919.1| cytomatrix protein-like protein [Arabidopsis thaliana]

 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 195/363 (53%), Gaps = 80/363 (22%)

Query: 18  KILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIH 77
           K LVK+L+++Q+Q+E+L+K+++ILE  +K  +E W+SDVR YED +S M  EI   ++  
Sbjct: 21  KSLVKILQTKQDQLESLLKDKKILESEIKTNNENWLSDVRNYEDQLSLMMKEIETTKMFQ 80

Query: 78  LLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLR----------------- 120
           LL+  KS+++ GLK ++ SL  L LE++ D+L DF AWFD L                  
Sbjct: 81  LLETYKSNLLCGLKEKDRSLCNLKLEHSLDELKDFKAWFDFLTLNTNVESVSGNSEGTAI 140

Query: 121 ------------QKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRA 168
                       +  K    K  EVS  L E  F WNQ+K +E++ T K+  K  E+ +A
Sbjct: 141 KSLEAKIRKLKLEYEKLASEKKCEVSDLLRENGFAWNQFKCIESEFTDKLKRKDDEIVQA 200

Query: 169 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 228
           N +I  L++  EQLQ SN EKDETI++LK ++A+MET S K + EIS+LT++LE  +KSR
Sbjct: 201 NTKISSLISYQEQLQSSNQEKDETISRLKAKMAEMETNSTKKDEEISKLTRDLESAKKSR 260

Query: 229 TASDTPVLNRCTRIAGATTSNAGDSVQNRSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQS 288
               TPVL RCT++            + RS+                             
Sbjct: 261 GF--TPVLTRCTKL------------EKRSN----------------------------- 277

Query: 289 LGGKNGDNVVVNKQMPAAQVPLHVDSEKGTRSSKRK-AVDVIP--ILDTPKLFSSKFKVP 345
            G   G ++   K   AA       +EK ++SSKRK A ++ P  + + PKLF+S F++P
Sbjct: 278 -GNTVGSHISTKKDKSAASTT----NEKVSKSSKRKRAKNMTPVSVSEVPKLFTSTFRLP 332

Query: 346 KLK 348
           KLK
Sbjct: 333 KLK 335

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778999|gb|AAF79914.1|AC022472_23 Contains a weak similarity to Rap8 (Rac-3-1) gene from Rhynchosciara americana gb|U69899 [Arabidopsis thaliana]

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 193/362 (53%), Gaps = 80/362 (22%)

Query: 18  KILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIH 77
           K LVK+L+++Q+Q+E+L+K+++ILE  +K  +E W+SDVR YED +S M  EI   ++  
Sbjct: 21  KSLVKILQTKQDQLESLLKDKKILESEIKTNNENWLSDVRNYEDQLSLMMKEIETTKMFQ 80

Query: 78  LLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLR----------------- 120
           LL+  KS+++ GLK ++ SL  L LE++ D+L DF AWFD L                  
Sbjct: 81  LLETYKSNLLCGLKEKDRSLCNLKLEHSLDELKDFKAWFDFLTLNTNVESVSGNSEGTAI 140

Query: 121 ------------QKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRA 168
                       +  K    K  EVS  L E  F WNQ+K +E++ T K+  K  E+ +A
Sbjct: 141 KSLEAKIRKLKLEYEKLASEKKCEVSDLLRENGFAWNQFKCIESEFTDKLKRKDDEIVQA 200

Query: 169 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 228
           N +I  L++  EQLQ SN EKDETI++LK ++A+MET S K + EIS+LT++LE  +KSR
Sbjct: 201 NTKISSLISYQEQLQSSNQEKDETISRLKAKMAEMETNSTKKDEEISKLTRDLESAKKSR 260

Query: 229 TASDTPVLNRCTRIAGATTSNAGDSVQNRSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQS 288
               TPVL RCT++            + RS+                             
Sbjct: 261 GF--TPVLTRCTKL------------EKRSN----------------------------- 277

Query: 289 LGGKNGDNVVVNKQMPAAQVPLHVDSEKGTRSSKRK-AVDVIP--ILDTPKLFSSKFKVP 345
            G   G ++   K   AA       +EK ++SSKRK A ++ P  + + PKLF+S F++P
Sbjct: 278 -GNTVGSHISTKKDKSAA----STTNEKVSKSSKRKRAKNMTPVSVSEVPKLFTSTFRLP 332

Query: 346 KL 347
            L
Sbjct: 333 NL 334

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065885|ref|XP_002301978.1| predicted protein [Populus trichocarpa] gi|222843704|gb|EEE81251.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 166/312 (53%), Gaps = 79/312 (25%)

Query: 75  LIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKD--------- 125
           +  LL+AAK D+++GLK RE SL KL LE T+D+LADF A F  L Q  K+         
Sbjct: 1   MACLLEAAKGDLMLGLKQREVSLHKLKLEQTEDELADFQALFGYLSQSLKENSEETANGK 60

Query: 126 ---------GEPKSIE--------------------VSAFLDERAFLWNQYKVMENDLTS 156
                    GE K +E                    VSA    + F+WNQY ++E++LT+
Sbjct: 61  GPGHSDLKSGEAKKLEAEVERLKLENEKLVFEKNSEVSALQKGKNFVWNQYDILESNLTN 120

Query: 157 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISR 216
           K+  K AEV++ANE+I ++LA+ E LQ SN+EK+E I +L T++A++E  +KKW  E S+
Sbjct: 121 KLRIKEAEVEKANEKIAEVLATAELLQSSNDEKNEIIQRLNTKVAKIEADTKKWKEETSK 180

Query: 217 LTQELELLRKSRTASDTPVLNRCTRIAGATTSNAGDSVQNRSSTAGIKGRLRKSGSSSVT 276
           L++ELELLRK RTA  T V+  C             S   R+ T+G+K   R        
Sbjct: 181 LSRELELLRKLRTAQITTVMKPC-------------SAPVRTFTSGVKSCGR-------- 219

Query: 277 PLSNYSTTTAQSLGGKNGDNVVVNKQMPAAQVPLHVDSEKGTRSSKRKAVDVIPILDTPK 336
                             D  +V++++  + VP   D+EK  RS K+K +D   + + P+
Sbjct: 220 ------------------DCNLVDRKVLQSAVP-SKDAEKSIRSLKKKRMDA-SVFEAPR 259

Query: 337 LFSSKFKVPKLK 348
           LFSS FK+PK+K
Sbjct: 260 LFSSSFKIPKVK 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
TAIR|locus:2198586	342	AT1G19980 "AT1G19980" [Arabido	0.882	0.921	0.285	7.9e-30
ZFIN|ZDB-GENE-100921-78	1182	cgna "cingulin a" [Danio rerio	0.607	0.183	0.232	5.4e-06
UNIPROTKB|F1NGJ4	1905	PCNT "Uncharacterized protein"	0.607	0.113	0.270	7e-05
DICTYBASE|DDB_G0285101	1922	kif4 "kinesin-7" [Dictyosteliu	0.560	0.104	0.246	7.1e-05
DICTYBASE|DDB_G0290503	1492	DDB_G0290503 [Dictyostelium di	0.689	0.164	0.233	0.00015
UNIPROTKB|J9P2D7	1364	EEA1 "Uncharacterized protein"	0.882	0.230	0.226	0.00022
UNIPROTKB|F1PZD3	1411	EEA1 "Uncharacterized protein"	0.882	0.223	0.226	0.00023
FB|FBgn0020503	1690	CLIP-190 "Cytoplasmic linker p	0.764	0.161	0.224	0.00028
UNIPROTKB|E1C947	735	GOLGA5 "Uncharacterized protei	0.753	0.365	0.213	0.00028
UNIPROTKB|F1SQ11	1411	EEA1 "Uncharacterized protein"	0.879	0.222	0.226	0.00029

TAIR|locus:2198586 AT1G19980 "AT1G19980" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 95/333 (28%), Positives = 168/333 (50%)

Query:    18 KILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIH 77
             K LVK+L+++Q+Q+E+L+K+++ILE  +K  +E W+SDVR YED +S M  EI   ++  
Sbjct:    21 KSLVKILQTKQDQLESLLKDKKILESEIKTNNENWLSDVRNYEDQLSLMMKEIETTKMFQ 80

Query:    78 LLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPK-DGEPKSIEVSAF 136
             LL+  KS+++ GLK ++ SL  L LE++ D+L DF AWFD L      +    + E +A 
Sbjct:    81 LLETYKSNLLCGLKEKDRSLCNLKLEHSLDELKDFKAWFDFLTLNTNVESVSGNSEGTAI 140

Query:   137 LDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKL 196
                 A +  + K+    L S+   K+ EV   ++ + +   +  Q +   +E  + + + 
Sbjct:   141 KSLEAKI-RKLKLEYEKLASE---KKCEV---SDLLRENGFAWNQFKCIESEFTDKLKRK 193

Query:   197 KTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATTSNAGDSVQN 256
               +I Q        NT+IS L    E L+ S    D  +     ++A   T++     + 
Sbjct:   194 DDEIVQA-------NTKISSLISYQEQLQSSNQEKDETISRLKAKMAEMETNSTKKDEEI 246

Query:   257 RSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPAAQVPLHVDSEK 316
                T  ++   +  G + V  L+  +    +S G   G ++   K   AA       S K
Sbjct:   247 SKLTRDLESAKKSRGFTPV--LTRCTKLEKRSNGNTVGSHISTKKDKSAASTTNEKVS-K 303

Query:   317 GTRSSKRKAVDVIPILDTPKLFSSKFKVPKLKN 349
              ++  + K +  + + + PKLF+S F++PKLK+
Sbjct:   304 SSKRKRAKNMTPVSVSEVPKLFTSTFRLPKLKS 336

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-100921-78 cgna "cingulin a" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 54/232 (23%), Positives = 109/232 (46%)

Query:     7 SQASLERQKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQM 66
             +Q   +R+++++ L K+ K  +    T  +E  +L+  L  Q +KW  + +  +    + 
Sbjct:   817 TQLDDQRRQQERALDKLNKEMERLSATHREEMRLLQAQLDEQRDKWRKEQQDSQKITKEK 876

Query:    67 KSEI-VAQELIHLLDA----AKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQ 121
              SE+  AQ  IH L       K ++    + R+ +LL    E   ++L    +  +  R 
Sbjct:   877 LSELDKAQSTIHSLQEELGRVKKELFSSYEERDNALLDK--EMLTNRLKHLESEMETQRN 934

Query:   122 KPKDGEPKSIEVSAFLDERAFLWNQYKVMEND---LTSKINSKRAEVDRANERIEKLLAS 178
                D   +S E+ +  D+   L  +    +N    LT +I   R ++++    + +  +S
Sbjct:   935 TQND---RSREIRSLEDKIKHLELELDEEKNSAEMLTERITRSRDQIEQLRAELMQERSS 991

Query:   179 TEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQEL-ELLRKSRT 229
              + L+L  N  +  I + KT++A+ME G  + +T +S+L  ++ EL  + RT
Sbjct:   992 KQDLELDKNALERQIKEYKTRVAEME-GQSRSSTGVSQLESKIQELEERLRT 1042

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1NGJ4 PCNT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 132 (51.5 bits), Expect = 7.0e-05, P = 7.0e-05
 Identities = 64/237 (27%), Positives = 113/237 (47%)

Query:     5 TRSQASL--ERQKRDKILVKM-LKSQ-QEQIET-LVKEREILEDHLKMQHEKWVSDVRLY 59
             T+ QA L  E  K+ K      L S+  E+ ET L+KE E+L        EK   + +  
Sbjct:   168 TQEQAILGEEWSKKWKTSESFTLTSKADEECETGLLKEVELLAK------EKLELECQAE 221

Query:    60 EDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFD-- 117
             +DH S ++S++   E+  L +   S+  +  +L E + LK  +E  + QL +   + D  
Sbjct:   222 KDH-SNLRSQMKVLEM-ELEEQLHSNQDLTKQLMETAELKQQIEVLEKQLKNQRQFMDEQ 279

Query:   118 -LLRQKPKDGEPKSIE-VSAFLDERAFLWNQYKVMENDLT---SKINSKRAEVDRANERI 172
              + R+  +D   + I+ +   L   A L    +  E+ L    S++ S +AEV+   +  
Sbjct:   280 AIERENERDDFQQEIKKLEEQLKLSAKLQTSGEPRESSLLQFDSEVESLQAEVEEKVDDY 339

Query:   173 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229
              KLL   EQ       +D+ I KL  Q+ ++E  S + +  ++ L Q+L+ ++K  T
Sbjct:   340 NKLLLEKEQKHQEIAARDKEIEKLVAQVQELEHSSTEVSKTVNYLQQQLQKMKKVET 396

GO:0006915 "apoptotic process" evidence=IEA

GO:0007051 "spindle organization" evidence=IEA

GO:0021696 "cerebellar cortex morphogenesis" evidence=IEA

GO:0021772 "olfactory bulb development" evidence=IEA

GO:0035108 "limb morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0045171 "intercellular bridge" evidence=IEA

GO:0048854 "brain morphogenesis" evidence=IEA

GO:0061351 "neural precursor cell proliferation" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0005814 "centriole" evidence=IEA

DICTYBASE|DDB_G0285101 kif4 "kinesin-7" [Dictyostelium discoideum (taxid:44689)]

 Score = 132 (51.5 bits), Expect = 7.1e-05, P = 7.1e-05
 Identities = 55/223 (24%), Positives = 108/223 (48%)

Query:    24 LKSQQEQIETLVK---EREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLD 80
             L+ +QE++ TL +   E+E   + L+  H      +  YE+ I+Q+ SEI+  +L     
Sbjct:  1332 LEKKQEELVTLNQDKLEKEKKTNQLESDHSSATIKLENYENQITQLTSEII--DLKSKFQ 1389

Query:    81 AAKSDMVVGLKLREASLLK---LMLEYTDD------QLADFMAWFDLLRQKPKDGEPKSI 131
               KS+    +K +E +L +   L  + T+D      QL+D    FD  +Q       +S 
Sbjct:  1390 EFKSESESNIKQQEINLKESNDLNQQLTNDKFELTKQLSDLKVEFDKSKQLWSTRSSESN 1449

Query:   132 EVSAFLDERAFLWNQYKVMEND----LTSKINSKRAEVDRANERIEKLLASTEQLQLSNN 187
             +    L E     ++ + + ++    LT +IN K  E +  N + ++L  + + ++ SN 
Sbjct:  1450 DTIKELQESIISKDKERQLTSEQLVKLTDQINLKTWEYNDLNSQCQQLTKTLQNVKSSNE 1509

Query:   188 EKDETIAKLKTQIAQMETGSKKWNTEISRLTQE--LELLRKSR 228
             +++++I  L++Q +      K    EIS++ +   LE+L  +R
Sbjct:  1510 QQEQSIVSLESQTSAK---IKSLELEISQIQENHRLEVLELNR 1549

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0043515 "kinetochore binding" evidence=ISS

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0000089 "mitotic metaphase" evidence=ISS

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)]

 Score = 128 (50.1 bits), Expect = 0.00015, P = 0.00015
 Identities = 63/270 (23%), Positives = 136/270 (50%)

Query:     3 KTTRSQASLERQKRDKI--LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYE 60
             K  + Q +L  +K+DKI  LV+  +S  +++++ + +   L D L+ + EK +++  +  
Sbjct:   578 KIDQLQDNLN-EKQDKINELVENNESSSDELQSKLIQ---LSDQLQEKDEKLLNNQSIIN 633

Query:    61 DHISQM-KSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLL 119
             +  S + +++    ELI   + + SD +    ++ +  LK   E         +   D L
Sbjct:   634 ELQSNLNENQNKINELIEN-NQSSSDELNSKLIKLSDELKDKNENVRSLETSIIENQDKL 692

Query:   120 RQKPKDGEPKSIEVSAFLDERAFLWNQYKVMEN------DLTSKINSKRAEVDRANERIE 173
              Q  +  +    E+ + L+E+    NQ  ++EN      +L SK+N K+ E+   N+ IE
Sbjct:   693 DQLIQSNQVTVNELQSKLNEKEININQ--LIENNQSSLDELQSKLNEKQNEI---NQLIE 747

Query:   174 KLLASTEQLQLSNNEKDETIAKLKTQIAQM----ETGSKKWNTEISRLTQELELLRKSRT 229
                +S+++LQ   NEK + I++L++++ ++    E+ S +  +++ +L+ EL+   +   
Sbjct:   748 NNQSSSDELQSKLNEKHQEISELQSKLNELIENNESSSDELQSKLIQLSDELKEKDEKLK 807

Query:   230 ASDTPVLNRCTRIAGATTSNAGDSVQNRSS 259
             + D+ ++    ++   T SN  DS+    S
Sbjct:   808 SLDSIIIENQEKLVQLTKSNQ-DSLDELQS 836

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|J9P2D7 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 126 (49.4 bits), Expect = 0.00022, P = 0.00022
 Identities = 76/335 (22%), Positives = 144/335 (42%)

Query:     1 MGKTTRSQASLERQKRDKIL--VK-MLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVR 57
             M K   S   L+ QK+ + L  +K ML  Q+E+ + L +E E L    KMQH++  + ++
Sbjct:   729 MEKEIVSSTKLDLQKKSEALENIKQMLTEQEEEKKLLKREIENLSQDAKMQHKELNNKIQ 788

Query:    58 LYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFD 117
                  + ++K E   + L+  L A K +     K+ E SL     E+  +      A  D
Sbjct:   789 TAATELQKVKME--KETLMTELSATKENFS---KVSE-SLKNSKSEFEKENQKGKAAILD 842

Query:   118 LLRQKPKDGEPKSIEVSAFLDERAFL---WNQYKVMENDLTSKINSKRAEVDRANERIEK 174
             L +   +      ++    L E+  L     + K   + L  ++NS + +V +A   +++
Sbjct:   843 LEKTCKELKHQLQVQTENTLKEQNELKKSLEKEKQTSHQLKLELNSVQGQVVQAQNTLKQ 902

Query:   175 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQ-ELELLRKS-RTASD 232
                  +QLQ + NE  +   + K QI  ++ G  K  T IS+ T+ E +L ++S + A +
Sbjct:   903 KEKEEQQLQGTINELKQLTEQKKKQIEALQ-GEVK--TAISQKTELESKLQQQSTQAAQE 959

Query:   233 TPVLNRCTRIAGATTSNAGDSV-QNRSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGG 291
                      +   T   + D++ Q +S   G +  L  +     +     S      +  
Sbjct:   960 LTAEKEKMSVLQNTYEKSQDNLKQLQSDFYGKESELLATRQDLKSVEEKLSLAQEDLISN 1019

Query:   292 KN--GDNVVVNKQMPAAQVPLHVDSEKGTRSSKRK 324
             +N  G+   + +++  A+  L  DS K  +  K +
Sbjct:  1020 RNQIGNQNKLIQELKTAKAALEQDSAKKEQQLKEQ 1054

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1PZD3 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 126 (49.4 bits), Expect = 0.00023, P = 0.00023
 Identities = 76/335 (22%), Positives = 144/335 (42%)

Query:     1 MGKTTRSQASLERQKRDKIL--VK-MLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVR 57
             M K   S   L+ QK+ + L  +K ML  Q+E+ + L +E E L    KMQH++  + ++
Sbjct:   776 MEKEIVSSTKLDLQKKSEALENIKQMLTEQEEEKKLLKREIENLSQDAKMQHKELNNKIQ 835

Query:    58 LYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFD 117
                  + ++K E   + L+  L A K +     K+ E SL     E+  +      A  D
Sbjct:   836 TAATELQKVKME--KETLMTELSATKENFS---KVSE-SLKNSKSEFEKENQKGKAAILD 889

Query:   118 LLRQKPKDGEPKSIEVSAFLDERAFL---WNQYKVMENDLTSKINSKRAEVDRANERIEK 174
             L +   +      ++    L E+  L     + K   + L  ++NS + +V +A   +++
Sbjct:   890 LEKTCKELKHQLQVQTENTLKEQNELKKSLEKEKQTSHQLKLELNSVQGQVVQAQNTLKQ 949

Query:   175 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQ-ELELLRKS-RTASD 232
                  +QLQ + NE  +   + K QI  ++ G  K  T IS+ T+ E +L ++S + A +
Sbjct:   950 KEKEEQQLQGTINELKQLTEQKKKQIEALQ-GEVK--TAISQKTELESKLQQQSTQAAQE 1006

Query:   233 TPVLNRCTRIAGATTSNAGDSV-QNRSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGG 291
                      +   T   + D++ Q +S   G +  L  +     +     S      +  
Sbjct:  1007 LTAEKEKMSVLQNTYEKSQDNLKQLQSDFYGKESELLATRQDLKSVEEKLSLAQEDLISN 1066

Query:   292 KN--GDNVVVNKQMPAAQVPLHVDSEKGTRSSKRK 324
             +N  G+   + +++  A+  L  DS K  +  K +
Sbjct:  1067 RNQIGNQNKLIQELKTAKAALEQDSAKKEQQLKEQ 1101

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005969 "serine-pyruvate aminotransferase complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005545 "1-phosphatidylinositol binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0020503 CLIP-190 "Cytoplasmic linker protein 190" [Drosophila melanogaster (taxid:7227)]

 Score = 126 (49.4 bits), Expect = 0.00028, P = 0.00028
 Identities = 67/298 (22%), Positives = 138/298 (46%)

Query:     1 MGKTTRSQASLERQKRDKILVKMLKSQQEQIETLVKEREILEDHLK-MQHEKWVSDVRLY 59
             M +   +Q  LE++  ++ L   LK  Q ++E   K++   E HL+ ++ +    D  L 
Sbjct:   717 MTENAINQIQLEKESIEQQLA--LK--QNELEDFQKKQSESEVHLQEIKAQNTQKDFELV 772

Query:    60 E--DHISQMKSEIVAQELIH-LLDAA----KSDMVVGLKLREASLLKLMLEYTDDQLADF 112
             E  + + +++ ++  + L H  L AA    K +    +K +E  L +L  +  + + A  
Sbjct:   773 ESGESLKKLQQQLEQKTLGHEKLQAALEELKKEKETIIKEKEQELQQLQSKSAESESALK 832

Query:   113 MAWFDL--LRQKPK-DGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRAN 169
             +    L  L+Q+    GE  S  V+   DE +    Q K    +  S++ S ++ ++  +
Sbjct:   833 VVQVQLEQLQQQAAASGEEGSKTVAKLHDEIS----QLKSQAEETQSELKSTQSNLEAKS 888

Query:   170 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT 229
             +++E    S E+    +    E I KLK+++ + +      +T++   T++LE    +  
Sbjct:   889 KQLEAANGSLEEEAKKSGHLLEQITKLKSEVGETQAALSSCHTDVESKTKQLEA---ANA 945

Query:   230 ASDTPVLNRCTRIAGATTSNAGDSVQNRSSTAGIKGRLRKSGSSSV-TPLSNYSTTTA 286
             A +   +N+    + A  S+  D V+  + T   + +  +S SS++ T LS +S   A
Sbjct:   946 ALEK--VNKEYAESRAEASDLQDKVKEITDTLHAELQAERSSSSALHTKLSKFSDEIA 1001

GO:0008017 "microtubule binding" evidence=ISS;IDA

GO:0005875 "microtubule associated complex" evidence=ISS;IDA

GO:0003779 "actin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005938 "cell cortex" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0007349 "cellularization" evidence=IMP

GO:0007017 "microtubule-based process" evidence=ISS

GO:0045169 "fusome" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0051010 "microtubule plus-end binding" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0035371 "microtubule plus end" evidence=IDA

UNIPROTKB|E1C947 GOLGA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 122 (48.0 bits), Expect = 0.00028, P = 0.00028
 Identities = 62/291 (21%), Positives = 126/291 (43%)

Query:     2 GKTTRSQASLERQKR-DKIL--VKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRL 58
             G T   +  L+ +KR D++   VK+ K+Q E  +  + + +     +    EK ++ ++ 
Sbjct:   396 GVTAAERKYLDEKKRADELQQQVKVTKNQLESAKQELADYKQKATRILQSKEKLINSLKE 455

Query:    59 ---YEDHISQMKSEIVAQELIHLLDAAKSDM--VVG------LKLREASLLKLM-LEYTD 106
                 E   SQ  S +  +EL H  D  + ++  ++G       +L++    ++   E   
Sbjct:   456 GSGIEGLDSQTASTMELEELRHERDTQREEIQKLMGQIQQMRTELQDMETQQVSEAESVR 515

Query:   107 DQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVD 166
             +QL D        +   ++ E    E+     E  +   +    +N L S+I  +  E+ 
Sbjct:   516 EQLQDLQEQIAAHKMAKQEAEA---ELERQKQELRYTEEELYRTKNTLQSRIKDREEEIQ 572

Query:   167 RA-NERIEKLLASTEQLQLSN--NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL 223
             +  N+   K L+S+ Q +L N  ++  ET+ + +T +  + T       ++ RL  +L+ 
Sbjct:   573 KLRNQLTNKALSSSSQTELENRLHQLTETLIQKQTMLESLSTEKNSLVYQLERLEHQLKA 632

Query:   224 LRKSRTASDTPVLNRCTRIAGATTSNAGDSVQN-RSSTAGIKGRLRKSGSS 273
              + S T   +  +       GA   N      +  ++ AG+ GR+RK+ SS
Sbjct:   633 FQGSSTNGPSINMAGIDGTEGARMRNVPVLFSDVDTNVAGMYGRVRKAASS 683

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0031985 "Golgi cisterna" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0048193 "Golgi vesicle transport" evidence=IEA

UNIPROTKB|F1SQ11 EEA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 125 (49.1 bits), Expect = 0.00029, P = 0.00029
 Identities = 76/336 (22%), Positives = 147/336 (43%)

Query:     1 MGKTTRSQASLERQKRDKIL--VK-MLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVR 57
             M K T S   L+ QK+ + L  +K ML  Q+E+ + L +E E L  + KMQ ++  + ++
Sbjct:   776 MEKETVSSTKLDLQKKSEALENIKQMLTKQEEEKKILKQEVENLSQNAKMQQKELNNKIQ 835

Query:    58 LYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFD 117
                  + ++K E   + L+  L AAK  +    K+ + SL     E+  +      A  D
Sbjct:   836 AAVTELQKVKME--KETLVTELSAAKEKLS---KVSD-SLKNSKSEFEKESQKGKAAILD 889

Query:   118 LLRQKPKDGEPK-SIEVSAFLDERAFLWNQY---KVMENDLTSKINSKRAEVDRANERIE 173
             L  +  KD + +  +++ +   E+  L N     K   + L  +INS + ++ +A   ++
Sbjct:   890 L-EKTCKDLKHQLQVQIESAHKEQNELKNSLEKEKETSHQLKLEINSMQGQLTQAQNSLK 948

Query:   174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQ-ELELLRKSRTASD 232
             +     +QLQ + NE  +   + K QI  ++ G  K    +S+ T+ E +L ++S  A+ 
Sbjct:   949 QKEKEEQQLQGNINELKQLTEQKKKQIEALQ-GEVK--IAVSQKTELENKLQQQSTQAAQ 1005

Query:   233 TPVLNR--CTRIAGATTSNAGDSVQNRSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQSLG 290
                  +   + +  A   N  +  Q +S   G +  L  +     +     S      + 
Sbjct:  1006 ELAAEKEKISVLQNAYEKNQENLKQLQSDFYGKESELLATRQDLKSVEEKLSLAQEDLIS 1065

Query:   291 GKN--GDNVVVNKQMPAAQVPLHVDSEKGTRSSKRK 324
              +N  G+   + +++  A+  L  DS K     K +
Sbjct:  1066 NRNQIGNQNKLIQELKTARTTLEQDSAKKEEQLKEQ 1101

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005969 "serine-pyruvate aminotransferase complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005545 "1-phosphatidylinositol binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_V1787 SubName- Full=Putative uncharacterized protein; (357 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	357
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 38/204 (18%), Positives = 90/204 (44%), Gaps = 6/204 (2%)

Query: 30  QIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEI-VAQELIHLLDAAKSDMVV 88
           Q+E L ++ E  E + +++ E    ++ L    + +++ E+   +E +  L+    ++  
Sbjct: 201 QLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQE 260

Query: 89  GLKLREASL--LKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQ 146
            L+  E  +  LK  LE   ++L +       L+++ ++ E +   +   L+E      +
Sbjct: 261 ELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEE 320

Query: 147 YKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETG 206
            +    +L  KI + + E++     +E+L     +L+ +  E +E   KL   + ++E  
Sbjct: 321 LEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEE---KLSALLEELEEL 377

Query: 207 SKKWNTEISRLTQELELLRKSRTA 230
            +    E++ L  EL  +R     
Sbjct: 378 FEALREELAELEAELAEIRNELEE 401

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.16
PRK11637	428	AmiB activator; Provisional	96.93
PHA02562	562	46 endonuclease subunit; Provisional	96.89
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.77
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.68
PHA02562	562	46 endonuclease subunit; Provisional	96.44
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.39
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.33
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.2
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.15
PRK03918	880	chromosome segregation protein; Provisional	95.79
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	95.47
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.43
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.4
KOG0996	1293	consensus Structural maintenance of chromosome pro	94.93
PRK02224	880	chromosome segregation protein; Provisional	94.67
PRK02224	880	chromosome segregation protein; Provisional	94.44
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.29
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	93.56
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	93.46
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	93.44
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	93.29
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	92.98
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	92.84
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	92.8
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	92.59
KOG1850	391	consensus Myosin-like coiled-coil protein [Cytoske	92.48
COG2433	652	Uncharacterized conserved protein [Function unknow	92.43
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	92.22
PF00038	312	Filament: Intermediate filament protein; InterPro:	91.96
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	91.84
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	91.74
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	91.66
PRK11637	428	AmiB activator; Provisional	91.63
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	91.5
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	91.49
KOG4807	593	consensus F-actin binding protein, regulates actin	91.34
PRK03918	880	chromosome segregation protein; Provisional	90.89
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	90.69
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	90.31
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	90.0
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	89.96
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	89.42
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	89.12
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	88.8
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	88.4
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	88.29
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	87.93
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	87.83
PRK09039	343	hypothetical protein; Validated	87.76
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	87.56
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	87.39
KOG0933	1174	consensus Structural maintenance of chromosome pro	87.06
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	87.04
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	86.98
KOG0964	1200	consensus Structural maintenance of chromosome pro	86.83
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	86.42
KOG0971	1243	consensus Microtubule-associated protein dynactin	85.27
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	84.52
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	84.52
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	83.94
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	83.89
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	83.61
PRK04778	569	septation ring formation regulator EzrA; Provision	83.53
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	83.53
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	83.04
PRK04863	1486	mukB cell division protein MukB; Provisional	82.9
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	82.79
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	82.58
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	82.55
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	82.2
KOG0018	1141	consensus Structural maintenance of chromosome pro	82.19
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	82.11
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	81.97
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	81.86
cd07658	239	F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin	81.2
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	80.97
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	80.43

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.16  E-value=0.0086  Score=67.31  Aligned_cols=224  Identities=19%  Similarity=0.248  Sum_probs=118.5

Q ss_pred             HHHHHHHhhhchhHHHHHHHHHHHHhcCCCC-CCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHH
Q 018386           95 ASLLKLMLEYTDDQLADFMAWFDLLRQKPKD-GEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIE  173 (357)
Q Consensus        95 ~~l~k~~lE~teDeL~DFka~~~~L~~~lke-~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iq  173 (357)
                      +.-|..+++-.+-+|.+-+..+..=+..+.+ -.+..+|..-++...+-+=.+.++-|+++-.+++..+....+-    .
T Consensus       449 i~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~----e  524 (1293)
T KOG0996|consen  449 IEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKV----E  524 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence            3333333333333444444333332222222 2356677888888999999999999999998887765555544    4


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccccccccccCCCCc
Q 018386          174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTRIAGATTSNAGDS  253 (357)
Q Consensus       174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~~~~~~~~~~~~~  253 (357)
                      .|...++.++....++-++|..++.++..|....+++-.++.+|..+..+|++--.+       .-+++.-.+.+.+-.+
T Consensus       525 ~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~-------~rqrveE~ks~~~~~~  597 (1293)
T KOG0996|consen  525 ELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNK-------LRQRVEEAKSSLSSSR  597 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhh
Confidence            455555566666778888888888887733333333333333333333322221111       1111111111111111


Q ss_pred             ccc-----------cccccccccccccCCCCCccCCCCCccccccccCCCCCCcceeccccCCC---------------C
Q 018386          254 VQN-----------RSSTAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPAA---------------Q  307 (357)
Q Consensus       254 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~k~~~~~---------------~  307 (357)
                      -+|           -.-..||.|||-.-|+-..    -|.  +|-|.+|.--++|||-..-+|.               -
T Consensus       598 s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~----kYD--vAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTF  671 (1293)
T KOG0996|consen  598 SRNKVLDALMRLKESGRIPGFYGRLGDLGAIDE----KYD--VAISTACARLDYIVVDTIETAQECINFLKKNNLGRATF  671 (1293)
T ss_pred             hhhHHHHHHHHHHHcCCCCccccccccccccch----HHH--HHHHHhccccceEEeccHHHHHHHHHHHHHcCCCceeE
Confidence            000           0114688999988776432    222  2333344444677776654442               1


Q ss_pred             CCccccccccccccccccccccccccCcccccc
Q 018386          308 VPLHVDSEKGTRSSKRKAVDVIPILDTPKLFSS  340 (357)
Q Consensus       308 ~~~~~~~~k~~r~~k~k~~~~~~~~e~pklfss  340 (357)
                      +++    + ..+--.++.+++.|-..+|+||.=
T Consensus       672 i~L----D-ki~~~~~~l~~i~tpenvPRLfDL  699 (1293)
T KOG0996|consen  672 IIL----D-KIKDHQKKLAPITTPENVPRLFDL  699 (1293)
T ss_pred             Eeh----H-hhhhhhhccCCCCCCCCcchHhhh
Confidence            222    1 122235667888888999999973

>PRK11637 AmiB activator; Provisional

Probab=96.93  E-value=0.21  Score=49.41  Aligned_cols=82  Identities=15%  Similarity=0.284  Sum_probs=48.1

Q ss_pred             hhhhHhhhhhHHHhhhhhHHHHHHHHHHHHH-----------HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhh
Q 018386          144 WNQYKVMENDLTSKINSKRAEVDRANERIEK-----------LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNT  212 (357)
Q Consensus       144 WNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqK-----------L~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~e  212 (357)
                      -++|...-.+|..-++....+++.+...++.           +.+...+|+..-.++...+..|+.+..+.+....+...
T Consensus       161 l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~  240 (428)
T PRK11637        161 FGYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRA  240 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666666666666655555544444332           33333344555556666788887776666666666666


Q ss_pred             HHHHHHHHHHHHH
Q 018386          213 EISRLTQELELLR  225 (357)
Q Consensus       213 eIs~L~~eLe~lr  225 (357)
                      +.++|...|+.+.
T Consensus       241 ~~~~L~~~I~~l~  253 (428)
T PRK11637        241 NESRLRDSIARAE  253 (428)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666666553

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.89  E-value=0.55  Score=46.85  Aligned_cols=116  Identities=12%  Similarity=0.180  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHhc--CCCC-----CCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 018386          107 DQLADFMAWFDLLRQ--KPKD-----GEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLAST  179 (357)
Q Consensus       107 DeL~DFka~~~~L~~--~lke-----~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~  179 (357)
                      .++..|...+.++..  .|..     .+. ..++..|-...+..=.|++.++..... +.....+.+++...+..+.+.+
T Consensus       269 ~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~-~~~~~~l~d~i~~l~~~l~~l~~~i~~-~~~~~~~~~~~~~~i~el~~~i  346 (562)
T PHA02562        269 SKIEQFQKVIKMYEKGGVCPTCTQQISEG-PDRITKIKDKLKELQHSLEKLDTAIDE-LEEIMDEFNEQSKKLLELKNKI  346 (562)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666643  1111     112 556666666666666666666655552 2222223444444444444444


Q ss_pred             HHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386          180 EQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL  224 (357)
Q Consensus       180 EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l  224 (357)
                      ......-...-.++..|+.++.+++....+..+++..|..+|..+
T Consensus       347 ~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~  391 (562)
T PHA02562        347 STNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI  391 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence            444433333444444445555555444444444444444444433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.77  E-value=0.2  Score=46.69  Aligned_cols=193  Identities=20%  Similarity=0.314  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhh----hhhhHHHHHHhHHhHHHHH-------------------HHHHHHHHhhhh
Q 018386           29 EQIETLVKEREILEDHLKMQHEKWVS----DVRLYEDHISQMKSEIVAQ-------------------ELIHLLDAAKSD   85 (357)
Q Consensus        29 ~QvEsL~~ER~~LEa~ik~QhE~W~s----dv~~lqdrLsqm~~el~~e-------------------E~~~~~EaAk~~   85 (357)
                      ..|..|=.+...|+..|...++.|-.    ....|+..|..++..+..-                   ++..+|+.....
T Consensus        18 ekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~   97 (312)
T PF00038_consen   18 EKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAE   97 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            56778888889999999888887644    3445666666665544431                   122222211100


Q ss_pred             hhhchhhHHHHHHHHHhhhch-------hHHHHHHHHHHHHhcC-------CCC-C---------CcchhhHHhhhhhhh
Q 018386           86 MVVGLKLREASLLKLMLEYTD-------DQLADFMAWFDLLRQK-------PKD-G---------EPKSIEVSAFLDERA  141 (357)
Q Consensus        86 l~LGlK~RE~~l~k~~lE~te-------DeL~DFka~~~~L~~~-------lke-~---------SeKdkEVsALlaEKd  141 (357)
                        ...=+-++..++.-++...       ..+..++..+.+|...       |.. .         .....++++.|++  
T Consensus        98 --~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~e--  173 (312)
T PF00038_consen   98 --RKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALRE--  173 (312)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHH--
T ss_pred             --HHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhh--
Confidence              0000111222222222111       1223334444444332       111 0         1223455665554  


Q ss_pred             hhhhhh--------HhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH-------HHhh---
Q 018386          142 FLWNQY--------KVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ-------IAQM---  203 (357)
Q Consensus       142 FVWNQ~--------k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak-------~aeM---  203 (357)
                       ++.||        ..+|.-|...+......+.++++.+..+...+-.+...-+.-..+|..|+++       +.++   
T Consensus       174 -iR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~  252 (312)
T PF00038_consen  174 -IRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR  252 (312)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence             34444        2688889888888777777777777666666666655555555555555444       3222   


Q ss_pred             -hhcccchhhHHHHHHHHHHHHHh
Q 018386          204 -ETGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       204 -e~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                       ..........|..|+.+|..||.
T Consensus       253 ~~~~~~~~~~~i~~le~el~~l~~  276 (312)
T PF00038_consen  253 LDEEREEYQAEIAELEEELAELRE  276 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccchhHHHHHH
Confidence             33445566777777777777764

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.68  E-value=0.15  Score=55.56  Aligned_cols=200  Identities=20%  Similarity=0.277  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhHHHHHHhHHhHHHHHH-----HHHHHH-----------H
Q 018386           21 VKMLKSQQEQIETLVKEREILEDHL---KMQHEKWVSDVRLYEDHISQMKSEIVAQE-----LIHLLD-----------A   81 (357)
Q Consensus        21 VkMLr~~q~QvEsL~~ER~~LEa~i---k~QhE~W~sdv~~lqdrLsqm~~el~~eE-----~~~~~E-----------a   81 (357)
                      -.+|-++++|++.+-.|+.++..+|   +-.|+.--..+.+++++|.-....+..++     ...++-           .
T Consensus       356 ~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~  435 (775)
T PF10174_consen  356 NSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEAL  435 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHH
Confidence            4678899999999999999997777   45555555677888888766665554433     122221           0


Q ss_pred             hhhhhhhchhhHHHHHHHHHhhhch----hHH-------HHHHHHHHHHhcCCCCCCcchhhHHhhhhhh-hhhhhhhHh
Q 018386           82 AKSDMVVGLKLREASLLKLMLEYTD----DQL-------ADFMAWFDLLRQKPKDGEPKSIEVSAFLDER-AFLWNQYKV  149 (357)
Q Consensus        82 Ak~~l~LGlK~RE~~l~k~~lE~te----DeL-------~DFka~~~~L~~~lke~SeKdkEVsALlaEK-dFVWNQ~k~  149 (357)
                      ...+-.++.++|-..-+...-+..+    +++       .++++.+..|..+|.+   +...+..+--+- .+.=||   
T Consensus       436 ~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsE---k~~~l~~~kee~s~l~s~~---  509 (775)
T PF10174_consen  436 ETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSE---KELQLEDAKEEASKLASSQ---  509 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHhhhHHHHHhhcc---
Confidence            2222345566555555443322222    334       4444444444444443   322222111110 111233   


Q ss_pred             hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386          150 MENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT  229 (357)
Q Consensus       150 ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~  229 (357)
                       ++.++ .|+.=++++.+.++++.+|...++.++..+ +.-+.|..|...++..-..+-+...||.+|-+-|..+=..+.
T Consensus       510 -~K~~s-~i~~l~I~lEk~rek~~kl~~ql~k~~~~~-e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~  586 (775)
T PF10174_consen  510 -EKKDS-EIERLEIELEKKREKHEKLEKQLEKLRANA-ELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKN  586 (775)
T ss_pred             -chhhh-HHHHHHHHHHHhhhHHHHHHHHHHHHHhCH-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33333 467888889999999999988888765544 556678888887777777777777777777776666655554

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.44  E-value=0.12  Score=51.59  Aligned_cols=105  Identities=18%  Similarity=0.250  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 018386          106 DDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLS  185 (357)
Q Consensus       106 eDeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~  185 (357)
                      ++.+......+..|..++++....-.++.....+    ++++..-=.++...+...+..+......+..|+..++.|+..
T Consensus       298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~----~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~  373 (562)
T PHA02562        298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE----FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE  373 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555666667777777666655555555554443    333333334455567777777888888999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhhhcccchhhHH
Q 018386          186 NNEKDETIAKLKTQIAQMETGSKKWNTEI  214 (357)
Q Consensus       186 nqeKDdeI~RLqak~aeMe~~~Kkk~eeI  214 (357)
                      +.+..+++.+|..++.++.....+...+.
T Consensus       374 ~~~~~~~l~~l~~~l~~~~~~~~~~~ke~  402 (562)
T PHA02562        374 FVDNAEELAKLQDELDKIVKTKSELVKEK  402 (562)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887666655544443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.39  E-value=0.7  Score=49.26  Aligned_cols=60  Identities=18%  Similarity=0.317  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 018386          165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELL  224 (357)
Q Consensus       165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~l  224 (357)
                      ..+....++.|.+.++.++....+....+..++.++.+++......+.++..++.+++.+
T Consensus       401 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~  460 (1164)
T TIGR02169       401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL  460 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444455555555555555555555555555555555544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.33  E-value=0.84  Score=49.99  Aligned_cols=95  Identities=20%  Similarity=0.237  Sum_probs=64.0

Q ss_pred             CcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh-------hhhhHH------
Q 018386          127 EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNN-------EKDETI------  193 (357)
Q Consensus       127 SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nq-------eKDdeI------  193 (357)
                      +.|+.|+.+|..+-.=.=||+.-| ..+.+.||.   ....+...+..|+..++.|..--.       +|..-|      
T Consensus       297 ~rk~~E~~~~qt~l~~~~~~~~d~-r~hi~~lke---sl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE  372 (775)
T PF10174_consen  297 SRKKSELEALQTRLETLEEQDSDM-RQHIEVLKE---SLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEE  372 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999988888888888 666667753   666666777777777777754433       344333      


Q ss_pred             -HHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386          194 -AKLKTQIAQMETGSKKWNTEISRLTQELELLR  225 (357)
Q Consensus       194 -~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr  225 (357)
                       .+++.++.+|.-....++-+|+.|...+++|.
T Consensus       373 ~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Le  405 (775)
T PF10174_consen  373 KSRLQGEIEDLRDMLDKKERKINVLQKKIENLE  405 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33344455555556666667777777765554

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.20  E-value=0.94  Score=48.32  Aligned_cols=54  Identities=20%  Similarity=0.283  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHH
Q 018386          163 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISR  216 (357)
Q Consensus       163 ~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~  216 (357)
                      .+....+..++.+.+.+++|+....+...+|..++.++.+.+....+...++..
T Consensus       420 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~  473 (1164)
T TIGR02169       420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD  473 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555555544433333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.15  E-value=0.47  Score=51.98  Aligned_cols=107  Identities=24%  Similarity=0.313  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH--hhhh
Q 018386          109 LADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQL--QLSN  186 (357)
Q Consensus       109 L~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeL--Q~~n  186 (357)
                      -++|--.+..|          .+-|+|+.+|||-.--|.|.+-..++..|.+  .|.+--+|-|.-|...=|.|  +-..
T Consensus       404 ~~e~~QRva~l----------EkKvqa~~kERDalr~e~kslk~ela~~l~~--DeLaEkdE~I~~lm~EGEkLSK~ql~  471 (961)
T KOG4673|consen  404 REEYHQRVATL----------EKKVQALTKERDALRREQKSLKKELAAALLK--DELAEKDEIINQLMAEGEKLSKKQLA  471 (961)
T ss_pred             HHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            36666666665          3569999999999999999988888888877  78888899999999988888  3344


Q ss_pred             hhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386          187 NEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT  229 (357)
Q Consensus       187 qeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~  229 (357)
                      |  ...|-+|.||..+-+++.+++.+-|..|+-|++.|+++-.
T Consensus       472 q--s~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~  512 (961)
T KOG4673|consen  472 Q--SAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILR  512 (961)
T ss_pred             H--HHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            4  6789999999999999999999999999999999987643

>PRK03918 chromosome segregation protein; Provisional

Probab=95.79  E-value=2.8  Score=44.41  Aligned_cols=30  Identities=20%  Similarity=0.409  Sum_probs=15.0

Q ss_pred             HHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386          196 LKTQIAQMETGSKKWNTEISRLTQELELLR  225 (357)
Q Consensus       196 Lqak~aeMe~~~Kkk~eeIs~L~~eLe~lr  225 (357)
                      ++.++.++.........+|..|...++.+.
T Consensus       403 l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~  432 (880)
T PRK03918        403 IEEEISKITARIGELKKEIKELKKAIEELK  432 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344333333455555666666665555

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=95.47  E-value=2  Score=45.56  Aligned_cols=95  Identities=21%  Similarity=0.300  Sum_probs=50.8

Q ss_pred             HHhhhhhhhhhhhhhHhhhhhHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccc
Q 018386          133 VSAFLDERAFLWNQYKVMENDLTSKI---NSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKK  209 (357)
Q Consensus       133 VsALlaEKdFVWNQ~k~ME~Dyt~lL---K~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kk  209 (357)
                      +..+-.+-...=+++.-++.++..+-   ..-..++++..+.+..+...++.++....+-.+++..++.++..++.....
T Consensus       812 ~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~  891 (1179)
T TIGR02168       812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL  891 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344445555555443221   122223333344444455555555555555556666666667777777777


Q ss_pred             hhhHHHHHHHHHHHHHhh
Q 018386          210 WNTEISRLTQELELLRKS  227 (357)
Q Consensus       210 k~eeIs~L~~eLe~lrk~  227 (357)
                      ...++..+..++..+...
T Consensus       892 ~~~~~~~~~~~~~~~~~~  909 (1179)
T TIGR02168       892 LRSELEELSEELRELESK  909 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777777777666654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.43  E-value=0.93  Score=51.29  Aligned_cols=141  Identities=22%  Similarity=0.289  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHh
Q 018386           23 MLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLML  102 (357)
Q Consensus        23 MLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~l  102 (357)
                      =|...|.|++..=+|=++||..|+.+.-        .    +     ....++.+-|+         ++.|+..++..-+
T Consensus       678 ~l~~~~~~~~~~q~el~~le~eL~~le~--------~----~-----~kf~~l~~ql~---------l~~~~l~l~~~r~  731 (1174)
T KOG0933|consen  678 KLKQAQKELRAIQKELEALERELKSLEA--------Q----S-----QKFRDLKQQLE---------LKLHELALLEKRL  731 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H----H-----HHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence            3456666777766676777777766544        0    0     12344444444         7888888888888


Q ss_pred             hhch-----hHHHHHHHHHHHHhcCCCCC--CcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHH
Q 018386          103 EYTD-----DQLADFMAWFDLLRQKPKDG--EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKL  175 (357)
Q Consensus       103 E~te-----DeL~DFka~~~~L~~~lke~--SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL  175 (357)
                      ++++     +++.-....+..+.+++++-  .-|+++.            -++++|++..+--.+++.+..-++-.|+.+
T Consensus       732 ~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~------------~i~~lE~~~~d~~~~re~rlkdl~keik~~  799 (1174)
T KOG0933|consen  732 EQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCED------------KISTLEKKMKDAKANRERRLKDLEKEIKTA  799 (1174)
T ss_pred             hcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhHhhhhhHhHHHHHHHHHHHH
Confidence            8887     34455555555555555542  1222221            234555555555555555555444444444


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHHH
Q 018386          176 LASTEQLQLSNNEKDETIAKLKTQIA  201 (357)
Q Consensus       176 ~q~~EeLQ~~nqeKDdeI~RLqak~a  201 (357)
                      -+.+++--.--.++.++..+|+.+..
T Consensus       800 k~~~e~~~~~~ek~~~e~e~l~lE~e  825 (1174)
T KOG0933|consen  800 KQRAEESSKELEKRENEYERLQLEHE  825 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444433333344444444444433

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.40  E-value=1.7  Score=46.89  Aligned_cols=150  Identities=19%  Similarity=0.203  Sum_probs=82.0

Q ss_pred             hhhhhhhhhhHHHHHHhHHhHHHH-HHHHHHHHHh-------------hhhhhhchhhHHHHHHHHHhhhchhHHHHHHH
Q 018386           49 HEKWVSDVRLYEDHISQMKSEIVA-QELIHLLDAA-------------KSDMVVGLKLREASLLKLMLEYTDDQLADFMA  114 (357)
Q Consensus        49 hE~W~sdv~~lqdrLsqm~~el~~-eE~~~~~EaA-------------k~~l~LGlK~RE~~l~k~~lE~teDeL~DFka  114 (357)
                      ...|..+..-|++...-+...+.. ++-+..+..|             +.+.-++.|+-|+.+.=.-+|-+-.=+.+..+
T Consensus       177 ~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~  256 (629)
T KOG0963|consen  177 EQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLER  256 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345777777777766665544433 3333333222             22333555666665544444444445666777


Q ss_pred             HHHHHhcCCCC-CCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 018386          115 WFDLLRQKPKD-GEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETI  193 (357)
Q Consensus       115 ~~~~L~~~lke-~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI  193 (357)
                      ++..|..++.. ++.++..=...++-..||-||   ||+.-.-+...=+-.-+--.+.+.+.-..+..|...+..|+.+|
T Consensus       257 e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~---kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~l  333 (629)
T KOG0963|consen  257 EVEQLREQLAKANSSKKLAKIDDIDALGSVLNQ---KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISEL  333 (629)
T ss_pred             HHHHHHHHHHhhhhhhhhccCCchHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777665 343333333445557888888   44444444443333333334444444455555666677777777


Q ss_pred             HHHHHHHH
Q 018386          194 AKLKTQIA  201 (357)
Q Consensus       194 ~RLqak~a  201 (357)
                      -.|+.++.
T Consensus       334 eel~~kL~  341 (629)
T KOG0963|consen  334 EELKEKLN  341 (629)
T ss_pred             HHHHHHHh
Confidence            77777654

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.93  E-value=1.2  Score=51.09  Aligned_cols=113  Identities=21%  Similarity=0.353  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHHHhcCCCCC---CcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 018386          107 DQLADFMAWFDLLRQKPKDG---EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQ  183 (357)
Q Consensus       107 DeL~DFka~~~~L~~~lke~---SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ  183 (357)
                      +.|.+.+.-|..|..++.+.   .-|..+|..|++          .|+.=+--+++..+++|.++++.+++|-+.+..++
T Consensus       858 ~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~----------~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~  927 (1293)
T KOG0996|consen  858 KRLKELEEQIEELKKEVEELQEKAAKKARIKELQN----------KIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLT  927 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----------HHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhH
Confidence            34555555555555544331   112445555543          23334455667777777777777777755555544


Q ss_pred             hhhhhhhhHHHHHHH-----------------------------------HHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386          184 LSNNEKDETIAKLKT-----------------------------------QIAQMETGSKKWNTEISRLTQELELLRKSR  228 (357)
Q Consensus       184 ~~nqeKDdeI~RLqa-----------------------------------k~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r  228 (357)
                      +.-..=+--|...|.                                   .+.|-+...++.+.++..+..+++.+.++-
T Consensus       928 ~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~ 1007 (1293)
T KOG0996|consen  928 VAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSE 1007 (1293)
T ss_pred             HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333222222222222                                   233444455566666666677777776664


Q ss_pred             C
Q 018386          229 T  229 (357)
Q Consensus       229 ~  229 (357)
                      .
T Consensus      1008 ~ 1008 (1293)
T KOG0996|consen 1008 N 1008 (1293)
T ss_pred             H
Confidence            4

>PRK02224 chromosome segregation protein; Provisional

Probab=94.67  E-value=7.3  Score=41.58  Aligned_cols=17  Identities=24%  Similarity=0.259  Sum_probs=7.9

Q ss_pred             chhhHHHHHHHHHHHHH
Q 018386          209 KWNTEISRLTQELELLR  225 (357)
Q Consensus       209 kk~eeIs~L~~eLe~lr  225 (357)
                      .....+..|..+++.++
T Consensus       409 ~~e~~l~~l~~~~~~l~  425 (880)
T PRK02224        409 NAEDFLEELREERDELR  425 (880)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            33444444444444444

>PRK02224 chromosome segregation protein; Provisional

Probab=94.44  E-value=6.5  Score=41.96  Aligned_cols=56  Identities=23%  Similarity=0.335  Sum_probs=32.7

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386          174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT  229 (357)
Q Consensus       174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~  229 (357)
                      .+....+.|.....+..+++..+..++.+.+...+...++|..|+.+|+.++....
T Consensus       346 ~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~  401 (880)
T PRK02224        346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG  401 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444444555555555556666666666777777777777666554

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.29  E-value=2.9  Score=46.89  Aligned_cols=69  Identities=25%  Similarity=0.401  Sum_probs=34.1

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-------hhhhcccchhhHHHHHHHHHHHH
Q 018386          156 SKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA-------QMETGSKKWNTEISRLTQELELL  224 (357)
Q Consensus       156 ~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a-------eMe~~~Kkk~eeIs~L~~eLe~l  224 (357)
                      ..+.+.....+...+.+..+...++.++....+.+.+|..|+..+.       +++.......+.+..+.++++.+
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  486 (1163)
T COG1196         411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSL  486 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555556666655555555555555555544433       33333334444444444444433

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=93.56  E-value=12  Score=42.92  Aligned_cols=206  Identities=22%  Similarity=0.234  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhhhhhhhHHHHHHhHHhHHHH-HH----HHHHH---HHhhhhhhhc
Q 018386           22 KMLKSQQEQIETLVKEREILEDH----LKMQHEKWVSDVRLYEDHISQMKSEIVA-QE----LIHLL---DAAKSDMVVG   89 (357)
Q Consensus        22 kMLr~~q~QvEsL~~ER~~LEa~----ik~QhE~W~sdv~~lqdrLsqm~~el~~-eE----~~~~~---EaAk~~l~LG   89 (357)
                      ++|.+..+..+.++..=.++++.    .+.+++.--+.|-+.+.+|......+.. ++    +...+   ......+.-.
T Consensus       238 ~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k  317 (1074)
T KOG0250|consen  238 KNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQK  317 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44455555444444433333322    2344444334555556665555544444 11    11111   1222333334


Q ss_pred             hhhHHHHHHHHHhhhch--hHHHHHHHHHHHHhcCCCCC----CcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHH
Q 018386           90 LKLREASLLKLMLEYTD--DQLADFMAWFDLLRQKPKDG----EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRA  163 (357)
Q Consensus        90 lK~RE~~l~k~~lE~te--DeL~DFka~~~~L~~~lke~----SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~  163 (357)
                      +++-|+.+=.++-|...  .|+.++++-++.+..+..+.    .+.-..|.++-.+.|+..-|.-..+++....+..   
T Consensus       318 ~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~---  394 (1074)
T KOG0250|consen  318 LTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGS---  394 (1074)
T ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---
Confidence            45555555555555444  46777877777777764442    2455566777778888888888888887655555   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHH-------HHHHHHHHHHHhhcCC
Q 018386          164 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEI-------SRLTQELELLRKSRTA  230 (357)
Q Consensus       164 EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeI-------s~L~~eLe~lrk~r~a  230 (357)
                      +..+...++.-|.+.+|.||.....=.+++..++.++.+++-....-..+|       +--+.+|+.|++.-+-
T Consensus       395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~d  468 (1074)
T KOG0250|consen  395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTD  468 (1074)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            444445566667777777765444334444444444444443333333333       3333445555555443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=93.46  E-value=12  Score=39.48  Aligned_cols=31  Identities=13%  Similarity=0.228  Sum_probs=12.9

Q ss_pred             HHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386          193 IAKLKTQIAQMETGSKKWNTEISRLTQELEL  223 (357)
Q Consensus       193 I~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~  223 (357)
                      |..+++++.......+..+++|..++.+++.
T Consensus       437 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  467 (650)
T TIGR03185       437 LFRSEAEIEELLRQLETLKEAIEALRKTLDE  467 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333444444444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=93.44  E-value=3.9  Score=35.93  Aligned_cols=139  Identities=13%  Similarity=0.260  Sum_probs=90.3

Q ss_pred             HHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCC
Q 018386           45 LKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPK  124 (357)
Q Consensus        45 ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~~~lk  124 (357)
                      ++.--+.|.+++..++..+.+++.         +         .--++.|+..++.+....++||.-....+..+...+.
T Consensus         5 lk~E~d~a~~r~e~~e~~~K~le~---------~---------~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le   66 (143)
T PF12718_consen    5 LKLEADNAQDRAEELEAKVKQLEQ---------E---------NEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE   66 (143)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHH---------H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344557777777777777776552         1         2346788889999999999999888888888877776


Q ss_pred             CCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhh
Q 018386          125 DGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQME  204 (357)
Q Consensus       125 e~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe  204 (357)
                      ++.+....+.                  .+...+.--+-++++|.....-....+++....+       ..+.-++..++
T Consensus        67 e~~~~~~~~E------------------~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a-------e~~eRkv~~le  121 (143)
T PF12718_consen   67 ESEKRKSNAE------------------QLNRRIQLLEEELEEAEKKLKETTEKLREADVKA-------EHFERKVKALE  121 (143)
T ss_pred             hHHHHHHhHH------------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHH
Confidence            6543333322                  4455555556666666655544444444443333       33444556666


Q ss_pred             hcccchhhHHHHHHHHHHHHHh
Q 018386          205 TGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       205 ~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      .....|...+..|...+..+++
T Consensus       122 ~~~~~~E~k~eel~~k~~~~k~  143 (143)
T PF12718_consen  122 QERDQWEEKYEELEEKYKEAKK  143 (143)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcC
Confidence            6666888999988888776653

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=93.29  E-value=9.5  Score=44.59  Aligned_cols=126  Identities=17%  Similarity=0.203  Sum_probs=87.6

Q ss_pred             HhhhchhHHHHHHHHHHHHhcCCCCCCcchhh---------HHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHH
Q 018386          101 MLEYTDDQLADFMAWFDLLRQKPKDGEPKSIE---------VSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANER  171 (357)
Q Consensus       101 ~lE~teDeL~DFka~~~~L~~~lke~SeKdkE---------VsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~  171 (357)
                      ++.++-..|.+|-+.+..|+.+...+|.--++         -+|+-||+.|-  ++..-=+--..+|.+|-.....|.+.
T Consensus      1613 ~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~--~lq~~~~~~~~l~~~r~~g~~~ar~r 1690 (1758)
T KOG0994|consen 1613 LATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE--ILQKYYELVDRLLEKRMEGSQAARER 1690 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchhHHHH
Confidence            34444456778888888888776665422221         23466676654  33322222345777777888899999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386          172 IEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR  228 (357)
Q Consensus       172 iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r  228 (357)
                      |++|+...+.|=..+++|-+.|..|+.+.-.-+--...+-.+|-.|+.+|++++.--
T Consensus      1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            999999999998889999999999987765444444566778888999998877643

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=92.98  E-value=13  Score=38.63  Aligned_cols=132  Identities=21%  Similarity=0.268  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHhhhchhHHHHHHHHH---HHHhcCCCCCCcchhhHHhhhhhhhhhhhh--------hHhhhhhHHHhhh
Q 018386           91 KLREASLLKLMLEYTDDQLADFMAWF---DLLRQKPKDGEPKSIEVSAFLDERAFLWNQ--------YKVMENDLTSKIN  159 (357)
Q Consensus        91 K~RE~~l~k~~lE~teDeL~DFka~~---~~L~~~lke~SeKdkEVsALlaEKdFVWNQ--------~k~ME~Dyt~lLK  159 (357)
                      +..+...|+.-++.++..+.++.-.+   ..|..+|..   -..+|..|.+| =+.|..        .+....++...|.
T Consensus       209 ~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~---a~~~l~~Lq~E-l~~~~~~~l~~~~~~~~~~~~~~~~l~  284 (522)
T PF05701_consen  209 REQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAE---ASAELESLQAE-LEAAKESKLEEEAEAKEKSSELQSSLA  284 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHhhhHHhhhhhhhHHHHHH
Confidence            33455556666666666665555555   222222222   22344444433 111111        1222234444566


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386          160 SKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       160 ~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      .-..|..+|+..+++.-.....|+..+.-=-.+|.+.+.++..+.-......-.|+-|..+|..+|.
T Consensus       285 s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~  351 (522)
T PF05701_consen  285 SAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRS  351 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence            6666666666666655555555554444444455555555554444444445555555555554443

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=92.84  E-value=5.4  Score=42.57  Aligned_cols=64  Identities=27%  Similarity=0.339  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH-----------HHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386          163 AEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQ-----------IAQMETGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       163 ~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak-----------~aeMe~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      -|+......|.-|...+-+|+..|.--...|..|+-.           ++.-+...-+..+|+..|..|||.|+-
T Consensus       296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD  370 (546)
T KOG0977|consen  296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLD  370 (546)
T ss_pred             HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4555555556666666666677777777777777544           334444455556677777777777654

>TIGR00606 rad50 rad50

Probab=92.80  E-value=21  Score=40.84  Aligned_cols=19  Identities=16%  Similarity=0.006  Sum_probs=12.8

Q ss_pred             hHHHHHHHHHHHHhcCCCC
Q 018386          107 DQLADFMAWFDLLRQKPKD  125 (357)
Q Consensus       107 DeL~DFka~~~~L~~~lke  125 (357)
                      .++.+.+.-+..|..++..
T Consensus       799 ~ei~~l~~qie~l~~~l~~  817 (1311)
T TIGR00606       799 MELKDVERKIAQQAAKLQG  817 (1311)
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            5667777777777766554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=92.59  E-value=15  Score=41.39  Aligned_cols=42  Identities=21%  Similarity=0.200  Sum_probs=23.7

Q ss_pred             ccccccccccCCCCCccCCCCCccccccccCCCCCCcceeccccCCC
Q 018386          260 TAGIKGRLRKSGSSSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPAA  306 (357)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~k~~~~~  306 (357)
                      -.|+.|++..-++    +=..|.+.-.- -.|.+-.||||..+-.|.
T Consensus       514 ~~Gv~G~v~~li~----v~~~y~~Aie~-alG~~l~~vVV~~~~~a~  555 (1163)
T COG1196         514 LPGVYGPVAELIK----VKEKYETALEA-ALGNRLQAVVVENEEVAK  555 (1163)
T ss_pred             CCCccchHHHhcC----cChHHHHHHHH-HcccccCCeeeCChHHHH
Confidence            5677776654432    22256554444 344555788887755543

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]

Probab=92.48  E-value=14  Score=37.84  Aligned_cols=134  Identities=20%  Similarity=0.191  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018386          110 ADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEK  189 (357)
Q Consensus       110 ~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeK  189 (357)
                      ++.+-+=.-|+.++..-+.|..|...-|+--|=||.-||.==.-.+-++++-+.|.--=..+-.+--..+=+|-..++.+
T Consensus       211 e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~  290 (391)
T KOG1850|consen  211 EEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVR  290 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHH
Confidence            33333434444444444677777777777778788888752222333444433333222222222222233344567788


Q ss_pred             hhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC------CCccccccccccc
Q 018386          190 DETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA------SDTPVLNRCTRIA  243 (357)
Q Consensus       190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a------~~tpvl~~ct~~~  243 (357)
                      |.+|.+||.++..+|-+-.-...+-..|...|+-+.---++      --||+..+|+...
T Consensus       291 ~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~k~~~~~la~pe~~~~~~~~  350 (391)
T KOG1850|consen  291 DKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSAKNAMKDLATPESKPCIILD  350 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccchhhhhhhhcCcccccccccc
Confidence            99999999998876666555555555555555544433332      2478999998633

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.43  E-value=0.42  Score=51.36  Aligned_cols=114  Identities=25%  Similarity=0.293  Sum_probs=65.8

Q ss_pred             hhhhcccchhhHHHHHHHHHHHHHhhcC----CCCccccc--ccc--ccccccccCCCCcccccccccccc-cccccCCC
Q 018386          202 QMETGSKKWNTEISRLTQELELLRKSRT----ASDTPVLN--RCT--RIAGATTSNAGDSVQNRSSTAGIK-GRLRKSGS  272 (357)
Q Consensus       202 eMe~~~Kkk~eeIs~L~~eLe~lrk~r~----a~~tpvl~--~ct--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  272 (357)
                      .++....+++.+|++|+.+|..+++-|.    .-.|||..  --|  .|+.+-.            ..||+ |.+     
T Consensus       485 ~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~------------~~gik~GDv-----  547 (652)
T COG2433         485 RLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEE------------EYGIKEGDV-----  547 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHHH------------hhccccCcE-----
Confidence            3444445899999999999999997664    34577532  111  1111111            12221 110     


Q ss_pred             CCccCCCCCccccccccCCCCCCcceeccccCCCCCCccccccccccccccccccccccccCcccccccc
Q 018386          273 SSVTPLSNYSTTTAQSLGGKNGDNVVVNKQMPAAQVPLHVDSEKGTRSSKRKAVDVIPILDTPKLFSSKF  342 (357)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~k~~~~~~~~~~~~~~k~~r~~k~k~~~~~~~~e~pklfss~f  342 (357)
                      --|---|.-++.+|+-.+++.+.+|.+..++|.++-..          -.+.+|+++|+.|.-.+---.|
T Consensus       548 i~v~~~sG~g~~~a~~li~~~~raii~~~~~s~~A~e~----------f~~~~iPv~~~~dV~i~~ld~~  607 (652)
T COG2433         548 ILVEDPSGGGARTAEELIDKKPRAIIRGEEMSHAAAEE----------FFKNEIPVLPEGDVQIIRLDEF  607 (652)
T ss_pred             EEEEcCCCcchHhHHHHhccCcceEEccCccchHHHHH----------HhhcCCceeecCceEEEEecce
Confidence            00111233456788889999999999998886543222          2456788888776655444333

>TIGR00606 rad50 rad50

Probab=92.22  E-value=25  Score=40.17  Aligned_cols=67  Identities=15%  Similarity=0.253  Sum_probs=33.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH--hhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386          158 INSKRAEVDRANERIEKLLASTEQL--QLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       158 LK~K~~EvaQAtE~iqKL~q~~EeL--Q~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      ++.-..++...+..-..+..++..+  +....+...+|..|..++++|.  ......|..+|..++..|.+
T Consensus      1000 i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~--~~~~~~e~~~l~~~~~~l~~ 1068 (1311)
T TIGR00606      1000 MRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ--VLQMKQEHQKLEENIDLIKR 1068 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHH
Confidence            3333444455555555555555555  4444555566666666666442  23334444444444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=91.96  E-value=11  Score=35.36  Aligned_cols=201  Identities=20%  Similarity=0.262  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhhhhhhhhHHHHHHhHHhHHHHHH-----HHHHHHHhh
Q 018386           19 ILVKMLKSQQEQIETLVKEREILEDHLKM----------QHEKWVSDVRLYEDHISQMKSEIVAQE-----LIHLLDAAK   83 (357)
Q Consensus        19 iLVkMLr~~q~QvEsL~~ER~~LEa~ik~----------QhE~W~sdv~~lqdrLsqm~~el~~eE-----~~~~~EaAk   83 (357)
                      ++-.-|+....+|..+..++.+|+-.+.-          +++........++..|..+++.+..+-     +...++..+
T Consensus        51 ~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~  130 (312)
T PF00038_consen   51 MYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK  130 (312)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence            35555577888888888888888776633          333334444445555555555544422     344444445


Q ss_pred             hhhhhchhhHHHHHHHHHhhhch---hH-----HHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhh---
Q 018386           84 SDMVVGLKLREASLLKLMLEYTD---DQ-----LADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMEN---  152 (357)
Q Consensus        84 ~~l~LGlK~RE~~l~k~~lE~te---De-----L~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~---  152 (357)
                      .++.+=.+.++.++-.+....+.   -+     -.||...+..+...|.....+       -.+--..|.+-++-+-   
T Consensus       131 eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~-------~~~e~e~~y~~k~~~l~~~  203 (312)
T PF00038_consen  131 EELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQK-------NREELEEWYQSKLEELRQQ  203 (312)
T ss_dssp             HHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhh-------hhhhhhhhccccccccccc
Confidence            55444444444443333333310   01     134444444444443321111       1111223444443221   


Q ss_pred             --hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hhhhHHHHHHHHHHhhhhcccchhhHHHHHHH
Q 018386          153 --DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNN-----------EKDETIAKLKTQIAQMETGSKKWNTEISRLTQ  219 (357)
Q Consensus       153 --Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nq-----------eKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~  219 (357)
                        -....+..-+.|+......++.|...++.|+..+.           ..+.+...+++.++.++....+...+|.....
T Consensus       204 ~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~  283 (312)
T PF00038_consen  204 SEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLR  283 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence              11222333334444444444444444443333222           22333333444555555555577777777777


Q ss_pred             HHHHHHh
Q 018386          220 ELELLRK  226 (357)
Q Consensus       220 eLe~lrk  226 (357)
                      +.+.|-.
T Consensus       284 ey~~Ll~  290 (312)
T PF00038_consen  284 EYQELLD  290 (312)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666643

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=91.84  E-value=12  Score=35.59  Aligned_cols=31  Identities=10%  Similarity=0.105  Sum_probs=16.5

Q ss_pred             chhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 018386          209 KWNTEISRLTQELELLRKSRTASDTPVLNRCTR  241 (357)
Q Consensus       209 kk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~  241 (357)
                      ....++..+..+++.++....  .|.|.-||+.
T Consensus       250 ~~~~~l~~~~~~l~~~~~~l~--~~~i~AP~dG  280 (423)
T TIGR01843       250 EAQARLAELRERLNKARDRLQ--RLIIRSPVDG  280 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh--hcEEECCCCc
Confidence            445555566666665554333  4555555554

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=91.74  E-value=18  Score=43.74  Aligned_cols=71  Identities=27%  Similarity=0.408  Sum_probs=43.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-------hhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386          159 NSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA-------QMETGSKKWNTEISRLTQELELLRKSRT  229 (357)
Q Consensus       159 K~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a-------eMe~~~Kkk~eeIs~L~~eLe~lrk~r~  229 (357)
                      ++.+-+..-++|.+..+....++|+...-+|..++..++.++.       .++...++.-..|..|..+|+.-|-+|.
T Consensus      1044 rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~ 1121 (1930)
T KOG0161|consen 1044 RKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA 1121 (1930)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555556666666777777777777777777777766533       4444555555556666666666665553

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=91.66  E-value=0.72  Score=36.63  Aligned_cols=68  Identities=26%  Similarity=0.436  Sum_probs=53.9

Q ss_pred             hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386          153 DLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS  227 (357)
Q Consensus       153 Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~  227 (357)
                      ++..+|+.|+..++       .|+..-+.|......-.+.|.+|++++.+.+......+..+..++.+++.|+..
T Consensus         2 sl~~~l~EKDe~Ia-------~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~   69 (74)
T PF12329_consen    2 SLEKKLAEKDEQIA-------QLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER   69 (74)
T ss_pred             hHHHHHHhHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677665554       456666666666666688999999999999999999999999999999999864

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PRK11637 AmiB activator; Provisional

Probab=91.63  E-value=16  Score=36.51  Aligned_cols=28  Identities=14%  Similarity=0.360  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHhhhhcccchhhHHHHHHH
Q 018386          192 TIAKLKTQIAQMETGSKKWNTEISRLTQ  219 (357)
Q Consensus       192 eI~RLqak~aeMe~~~Kkk~eeIs~L~~  219 (357)
                      ++...++++++++...++....|.+|..
T Consensus       227 ~~~~~~~~l~~l~~~~~~L~~~I~~l~~  254 (428)
T PRK11637        227 SLQKDQQQLSELRANESRLRDSIARAER  254 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444455555555544

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.50  E-value=5.7  Score=36.83  Aligned_cols=32  Identities=22%  Similarity=0.415  Sum_probs=15.0

Q ss_pred             hHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 018386          191 ETIAKLKTQIAQMETGSKKWNTEISRLTQELE  222 (357)
Q Consensus       191 deI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe  222 (357)
                      ..+.+|+..+..++.....+++....+..+|.
T Consensus       197 ~~v~~Le~~id~le~eL~~~k~~~~~~~~eld  228 (237)
T PF00261_consen  197 RRVKKLEKEIDRLEDELEKEKEKYKKVQEELD  228 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444455555555555543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=91.49  E-value=11  Score=40.38  Aligned_cols=18  Identities=44%  Similarity=0.632  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 018386           28 QEQIETLVKEREILEDHL   45 (357)
Q Consensus        28 q~QvEsL~~ER~~LEa~i   45 (357)
                      +...++|+.....|+...
T Consensus       149 qkE~eeL~~~~~~Le~e~  166 (546)
T PF07888_consen  149 QKEKEELLKENEQLEEEV  166 (546)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444555555555544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=91.34  E-value=9  Score=40.34  Aligned_cols=183  Identities=21%  Similarity=0.224  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHH----HHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHH
Q 018386           22 KMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYED----HISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASL   97 (357)
Q Consensus        22 kMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqd----rLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l   97 (357)
                      +-++--.+|++..--+=+-++.-+..|.|+...+..++++    .+..|..  +|+..+.-+.          .+++.++
T Consensus       298 k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEe--tHQkkiEdLQ----------RqHqREL  365 (593)
T KOG4807|consen  298 KEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEE--THQKKIEDLQ----------RQHQREL  365 (593)
T ss_pred             HHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHH--HHHHHHHHHH----------HHHHHHH
Confidence            3335556777766555567777888898888888776554    4555553  4433322222          1222222


Q ss_pred             HH-------HHhhhchhH---HHHHHHH-HHHHhcCCCC----CC-------cchhhHHhhhhhhhhhhhhh--Hhhhhh
Q 018386           98 LK-------LMLEYTDDQ---LADFMAW-FDLLRQKPKD----GE-------PKSIEVSAFLDERAFLWNQY--KVMEND  153 (357)
Q Consensus        98 ~k-------~~lE~teDe---L~DFka~-~~~L~~~lke----~S-------eKdkEVsALlaEKdFVWNQ~--k~ME~D  153 (357)
                      -+       +++|.|.--   ++..+.. -..+.-+|..    ++       .--.||.++.+|=.++=.||  ||+|+.
T Consensus       366 ekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEna  445 (593)
T KOG4807|consen  366 EKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENA  445 (593)
T ss_pred             HHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22       244444322   2222111 1111222222    11       33467888889988888888  688876


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHH---H----hhhhhhhhhHHHHHHHHHH-----------------hhhhcccc
Q 018386          154 LTSKINSKRAEVDRANERIEKLLASTEQ---L----QLSNNEKDETIAKLKTQIA-----------------QMETGSKK  209 (357)
Q Consensus       154 yt~lLK~K~~EvaQAtE~iqKL~q~~Ee---L----Q~~nqeKDdeI~RLqak~a-----------------eMe~~~Kk  209 (357)
                      .-.         -++.+.-+-|.+|..+   |    |..|+-=..||.||..=++                 |+|++..-
T Consensus       446 hLa---------qalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRV  516 (593)
T KOG4807|consen  446 HLA---------QALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRV  516 (593)
T ss_pred             HHH---------HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHh
Confidence            531         1222233455555443   3    2334445678888877655                 56665544


Q ss_pred             h-------hhHHHHHHHHHHHHH
Q 018386          210 W-------NTEISRLTQELELLR  225 (357)
Q Consensus       210 k-------~eeIs~L~~eLe~lr  225 (357)
                      |       +.||+-|.+|||-+-
T Consensus       517 KEsEiQYLKqEissLkDELQtal  539 (593)
T KOG4807|consen  517 KESEIQYLKQEISSLKDELQTAL  539 (593)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            4       556666666776553

>PRK03918 chromosome segregation protein; Provisional

Probab=90.89  E-value=25  Score=37.46  Aligned_cols=12  Identities=17%  Similarity=0.407  Sum_probs=5.9

Q ss_pred             hhhhhHhhhhhH
Q 018386          143 LWNQYKVMENDL  154 (357)
Q Consensus       143 VWNQ~k~ME~Dy  154 (357)
                      +++++..+++++
T Consensus       305 l~~~~~~l~~~~  316 (880)
T PRK03918        305 YLDELREIEKRL  316 (880)
T ss_pred             HHHHHHHHHHHH
Confidence            455555555444

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=90.69  E-value=23  Score=36.81  Aligned_cols=199  Identities=15%  Similarity=0.168  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHh-HHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHH
Q 018386           23 MLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKS-EIVAQELIHLLDAAKSDMVVGLKLREASLLKLM  101 (357)
Q Consensus        23 MLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~-el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~  101 (357)
                      .|...+..++.|-.+- -....++.+.+.+..++..++..|.+... .+.... ...-........|+--..|..-.+.-
T Consensus       219 ~leeae~~l~~L~~e~-~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~-~~~~~~~~~~~~l~s~~~ELe~ak~~  296 (522)
T PF05701_consen  219 ELEEAEEELEELKEEL-EAAKDLESKLAEASAELESLQAELEAAKESKLEEEA-EAKEKSSELQSSLASAKKELEEAKKE  296 (522)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3466777777776665 34445566667777888888888777542 111111 00001111223366666777777777


Q ss_pred             hhhchhHHHHHHHHHHHHhcCCCCC-----------CcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHH
Q 018386          102 LEYTDDQLADFMAWFDLLRQKPKDG-----------EPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANE  170 (357)
Q Consensus       102 lE~teDeL~DFka~~~~L~~~lke~-----------SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE  170 (357)
                      |+.+.+|+..|++.+.-|..+|...           ......|+.|-.+-+=+=..+..+...-.    +-+....-.+.
T Consensus       297 L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~----~~k~~~~~l~~  372 (522)
T PF05701_consen  297 LEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE----KAKEAMSELPK  372 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc----chhhhHHHHHH
Confidence            7777788888888888777775441           23344455555554433333322221111    00111222333


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386          171 RIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS  227 (357)
Q Consensus       171 ~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~  227 (357)
                      .++.+....+++......--.++.+++.++.......+.....+.-...+++-.|-+
T Consensus       373 ~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKas  429 (522)
T PF05701_consen  373 ALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKAS  429 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444445555555555544444445555555555555555544

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=90.31  E-value=51  Score=40.07  Aligned_cols=41  Identities=24%  Similarity=0.348  Sum_probs=30.7

Q ss_pred             hhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386          186 NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       186 nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      .++--++|..|+.+++.+++..+..+.+|.....++..|+.
T Consensus      1245 ~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~ 1285 (1822)
T KOG4674|consen 1245 IQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEE 1285 (1822)
T ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556677777777778888888888888888888877764

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=90.00  E-value=2.3  Score=33.98  Aligned_cols=66  Identities=26%  Similarity=0.374  Sum_probs=57.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386          158 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL  223 (357)
Q Consensus       158 LK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~  223 (357)
                      |..=+.-|.+|-+.|+-|+..+++|+..|..-.++...|+.+...+..+...|.+.|.-|-+.|+.
T Consensus         6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~   71 (72)
T PF06005_consen    6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE   71 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            444456788999999999999999999998889999999999999999999999999998887764

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=89.96  E-value=31  Score=37.08  Aligned_cols=25  Identities=20%  Similarity=0.201  Sum_probs=16.0

Q ss_pred             HhhhhhhhhhhhhHHHHHHhHHhHH
Q 018386           46 KMQHEKWVSDVRLYEDHISQMKSEI   70 (357)
Q Consensus        46 k~QhE~W~sdv~~lqdrLsqm~~el   70 (357)
                      +.+++-...++..|+..|..|....
T Consensus       212 ~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  212 KEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556667777777777665443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=89.42  E-value=1.6  Score=38.29  Aligned_cols=70  Identities=27%  Similarity=0.403  Sum_probs=52.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386          158 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS  227 (357)
Q Consensus       158 LK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~  227 (357)
                      +...++|++.|++.+..+.+.+-+|...+-.++.+|.-|+.++...|..+.+..+.+..+...|+..-+.
T Consensus         2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~   71 (143)
T PF12718_consen    2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR   71 (143)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            4456678888888888888888888888888888888888888777777777666666666666655443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.12  E-value=36  Score=38.67  Aligned_cols=152  Identities=18%  Similarity=0.225  Sum_probs=77.5

Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhh
Q 018386           14 QKRDKI-LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKL   92 (357)
Q Consensus        14 ~~W~ri-LVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~   92 (357)
                      -+|.|+ .-.||-+...+-|..+..-+    +.+..|-    +..-|++.++++..  +-.|+++.+..++..+--=.+.
T Consensus       411 lewErar~qem~~Qk~reqe~iv~~na----k~~ql~~----eletLn~k~qqls~--kl~Dvr~~~tt~kt~ie~~~~q  480 (1118)
T KOG1029|consen  411 LEWERARRQEMLNQKNREQEWIVYLNA----KKKQLQQ----ELETLNFKLQQLSG--KLQDVRVDITTQKTEIEEVTKQ  480 (1118)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHH----HHHHHHHHHHHHhh--hhhhheeccchHHHHHHHhhhH
Confidence            367777 55566666666666655332    2222222    34445555555554  2344555566666655555555


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHhcC--------------CCC-------CCcchhhHHhhhhhhhhhhhhhHhhh
Q 018386           93 REASLLKLMLEYTDDQLADFMAWFDLLRQK--------------PKD-------GEPKSIEVSAFLDERAFLWNQYKVME  151 (357)
Q Consensus        93 RE~~l~k~~lE~teDeL~DFka~~~~L~~~--------------lke-------~SeKdkEVsALlaEKdFVWNQ~k~ME  151 (357)
                      ||..+         .++..+++.|-.+...              ++.       -+....++.|++++|+...++++--=
T Consensus       481 ~e~~i---------sei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdql  551 (1118)
T KOG1029|consen  481 RELMI---------SEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQL  551 (1118)
T ss_pred             HHHHH---------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55542         2333333333333322              222       23446788899999999998776422


Q ss_pred             hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 018386          152 NDLTSKINSKRAEVDRANERIEKLLASTEQLQL  184 (357)
Q Consensus       152 ~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~  184 (357)
                      -+..--..+|..|+.--+--..+|...+.-+|.
T Consensus       552 delskE~esk~~eidi~n~qlkelk~~~~~q~l  584 (1118)
T KOG1029|consen  552 DELSKETESKLNEIDIFNNQLKELKEDVNSQQL  584 (1118)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            222222233334444444444555555555543

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=88.80  E-value=8.3  Score=31.73  Aligned_cols=80  Identities=21%  Similarity=0.273  Sum_probs=50.2

Q ss_pred             hhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHH
Q 018386          142 FLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQEL  221 (357)
Q Consensus       142 FVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eL  221 (357)
                      ..|.+++-.|..+..-+-+=+.-+.....+...-.+..++-.....+|..+|.+|.+++.       ....+|++|...|
T Consensus        32 ~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~-------~l~~~~~k~e~~l  104 (126)
T PF13863_consen   32 QREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELE-------ELKSEISKLEEKL  104 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence            345666655555554444433334334444444455556666667888999999999998       4566777777777


Q ss_pred             HHHHhhc
Q 018386          222 ELLRKSR  228 (357)
Q Consensus       222 e~lrk~r  228 (357)
                      +.+....
T Consensus       105 ~~~~~Y~  111 (126)
T PF13863_consen  105 EEYKKYE  111 (126)
T ss_pred             HHHHHHH
Confidence            7766554

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=88.40  E-value=51  Score=40.22  Aligned_cols=27  Identities=19%  Similarity=0.401  Sum_probs=11.9

Q ss_pred             hHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 018386          153 DLTSKINSKRAEVDRANERIEKLLAST  179 (357)
Q Consensus       153 Dyt~lLK~K~~EvaQAtE~iqKL~q~~  179 (357)
                      ++...|++|+.|.-+.+..+..+...+
T Consensus      1066 el~~~l~kke~El~~l~~k~e~e~~~~ 1092 (1930)
T KOG0161|consen 1066 ELDNQLKKKESELSQLQSKLEDEQAEV 1092 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            444444444444444444443333333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=88.29  E-value=48  Score=38.41  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=27.7

Q ss_pred             cchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhh
Q 018386          128 PKSIEVSAFLDERAFLWNQYKVMENDLTSKINSK  161 (357)
Q Consensus       128 eKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K  161 (357)
                      .-+.|++-|.+.++|.=+||++|---|+ ++++|
T Consensus       499 ~r~~elsrl~a~~~elkeQ~kt~~~qye-~~~~k  531 (1195)
T KOG4643|consen  499 NRDLELSRLHALKNELKEQYKTCDIQYE-LLSNK  531 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            5688999999999999999999988887 44444

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=87.93  E-value=6  Score=34.70  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=22.5

Q ss_pred             hhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 018386          139 ERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQ  183 (357)
Q Consensus       139 EKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ  183 (357)
                      +=+..+..|+.|++++..+.    .++.+..+.++.+.+.++.++
T Consensus       131 ~l~~l~~~~~~~~~e~~~l~----~~~~~~~~~~~~~~~~~~~~~  171 (191)
T PF04156_consen  131 RLDSLDESIKELEKEIRELQ----KELQDSREEVQELRSQLERLQ  171 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            33445566666666666655    344445555555555555553

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=87.83  E-value=2.7  Score=39.71  Aligned_cols=88  Identities=18%  Similarity=0.273  Sum_probs=40.8

Q ss_pred             HHHHHhcCCCC----CCcchhhHHhhhhhhhhhhhhhHhhhhh---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018386          115 WFDLLRQKPKD----GEPKSIEVSAFLDERAFLWNQYKVMEND---LTSKINSKRAEVDRANERIEKLLASTEQLQLSNN  187 (357)
Q Consensus       115 ~~~~L~~~lke----~SeKdkEVsALlaEKdFVWNQ~k~ME~D---yt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nq  187 (357)
                      +|..|++.|++    .+.|+.||-+|-+--.=.=++++..|..   ..+.+..|..|........+......+.|.-...
T Consensus        11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~   90 (202)
T PF06818_consen   11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG   90 (202)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence            35556666665    3567777776654322222233333322   1233444444444444444444444444443344


Q ss_pred             hhhhHHHHHHHHHHh
Q 018386          188 EKDETIAKLKTQIAQ  202 (357)
Q Consensus       188 eKDdeI~RLqak~ae  202 (357)
                      .-+.+|..|+..++.
T Consensus        91 ~le~El~~Lr~~l~~  105 (202)
T PF06818_consen   91 QLEAELAELREELAC  105 (202)
T ss_pred             hhHHHHHHHHHHHHh
Confidence            444555555555544

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PRK09039 hypothetical protein; Validated

Probab=87.76  E-value=11  Score=37.34  Aligned_cols=66  Identities=18%  Similarity=0.274  Sum_probs=51.4

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhh
Q 018386          155 TSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKS  227 (357)
Q Consensus       155 t~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~  227 (357)
                      ...|..-+.+...++-.++.|.+.++.|...       |..|++.+...+...++.+..|..|..+|+.+...
T Consensus       122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~  187 (343)
T PRK09039        122 AQELDSEKQVSARALAQVELLNQQIAALRRQ-------LAALEAALDASEKRDRESQAKIADLGRRLNVALAQ  187 (343)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777778888888888888888744       88888888888887788888888888888877533

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=87.56  E-value=59  Score=37.29  Aligned_cols=117  Identities=21%  Similarity=0.203  Sum_probs=65.9

Q ss_pred             HHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhH---------hhhhhHHHhhhhhHHHHHH--------HHH--------
Q 018386          116 FDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYK---------VMENDLTSKINSKRAEVDR--------ANE--------  170 (357)
Q Consensus       116 ~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k---------~ME~Dyt~lLK~K~~EvaQ--------AtE--------  170 (357)
                      ++.|.-....-.++..+...+++|.+=.=||+-         ..++|-..++..+..+--|        -+-        
T Consensus       168 ~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~  247 (1265)
T KOG0976|consen  168 GEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPL  247 (1265)
T ss_pred             HHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH
Confidence            334444333345666666666666655544432         2345555555444433222        111        


Q ss_pred             --HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCC
Q 018386          171 --RIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASD  232 (357)
Q Consensus       171 --~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~  232 (357)
                        ....+..-..-||.+|.+=.+....|+++-.-++-..-.+.+..-.|..+|+-++.+|++.+
T Consensus       248 rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~  311 (1265)
T KOG0976|consen  248 RKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRAD  311 (1265)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              11233344455667777666666777777665565556666667777888999999988644

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=87.39  E-value=49  Score=36.22  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=17.3

Q ss_pred             hhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 018386          204 ETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR  241 (357)
Q Consensus       204 e~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~  241 (357)
                      +....++|.||..|...+..+-     .|-|-.+-|..
T Consensus       635 ~~~~~~~d~ei~~lk~ki~~~~-----av~p~~~~~~~  667 (697)
T PF09726_consen  635 QGQLRKKDKEIEELKAKIAQLL-----AVMPSDSYCSA  667 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----hcCCccccccC
Confidence            3444455555555555554432     16666666644

; GO: 0016021 integral to membrane

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=87.06  E-value=51  Score=38.23  Aligned_cols=119  Identities=22%  Similarity=0.269  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhcCCCCC----CcchhhHHhhhhhhhhh----------hhhhHhhhhhHHHhhhhhHHHHHHHHHHHH
Q 018386          108 QLADFMAWFDLLRQKPKDG----EPKSIEVSAFLDERAFL----------WNQYKVMENDLTSKINSKRAEVDRANERIE  173 (357)
Q Consensus       108 eL~DFka~~~~L~~~lke~----SeKdkEVsALlaEKdFV----------WNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iq  173 (357)
                      .|.|....|..+++...+.    .++.-|+..|+.|-.-+          |-|+..==.+|..-+-.-++.+..+...-.
T Consensus       788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~  867 (1174)
T KOG0933|consen  788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVK  867 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence            4677777777777765553    35555666666655544          333222222333333333333333333334


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHH-------HHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386          174 KLLASTEQLQLSNNEKDETIAKLK-------TQIAQMETGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       174 KL~q~~EeLQ~~nqeKDdeI~RLq-------ak~aeMe~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      ++++.+.....---.=|.+|+.+-       .+...|+...+++..|+.+++.+=..+|+
T Consensus       868 ~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k  927 (1174)
T KOG0933|consen  868 KAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARK  927 (1174)
T ss_pred             HHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHH
Confidence            444444333222222244454432       33445666666666666666666555554

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=87.04  E-value=47  Score=37.88  Aligned_cols=61  Identities=16%  Similarity=0.058  Sum_probs=36.3

Q ss_pred             HhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhHHHHHHHHHHhhhhccc
Q 018386          148 KVMENDLTSKINSKRAEVDRANERIEKLLASTE-QLQLSNNEKDETIAKLKTQIAQMETGSK  208 (357)
Q Consensus       148 k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~E-eLQ~~nqeKDdeI~RLqak~aeMe~~~K  208 (357)
                      .+|=.+-.+.+++-+.|.+-....+++|+-++. ..|+.|+....--..|..|-.+|..+..
T Consensus       486 ~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~  547 (980)
T KOG0980|consen  486 ETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVA  547 (980)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            346666777888888888888888888887733 3355555444333333334334444333

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=86.98  E-value=1.6  Score=38.16  Aligned_cols=69  Identities=19%  Similarity=0.326  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH--HhhhhcccchhhHHHHHHHHHHHHHhhcCCCCcc
Q 018386          165 VDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQI--AQMETGSKKWNTEISRLTQELELLRKSRTASDTP  234 (357)
Q Consensus       165 vaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~--aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tp  234 (357)
                      ...-...|..|+..+.+|+.....-..++..|...+  .+|.........+|..|+..|+.||+. +..+||
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~-~~~vs~  144 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG-SKPVSP  144 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCH
Confidence            333344455555555555554444445555555543  356666667788888888888888883 334665

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=86.83  E-value=68  Score=37.25  Aligned_cols=209  Identities=16%  Similarity=0.094  Sum_probs=104.9

Q ss_pred             CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHh
Q 018386            3 KTTRSQASLERQKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAA   82 (357)
Q Consensus         3 ~~~~s~~ss~r~~W~riLVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaA   82 (357)
                      ....+|-+.+-.+-..-|-+=+..-+.++-.+..+|.+++.++-...-....-+..-.+.|.+--+.+.+.+....    
T Consensus       773 sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~e----  848 (1200)
T KOG0964|consen  773 SELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSE----  848 (1200)
T ss_pred             HHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhh----
Confidence            3334443333333333355555677777888888888888777555444433333333333332222222333332    


Q ss_pred             hhhhhhchhhHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCCC---CcchhhHHhhhhhhhhhhhhhHhhhhhHH--Hh
Q 018386           83 KSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKDG---EPKSIEVSAFLDERAFLWNQYKVMENDLT--SK  157 (357)
Q Consensus        83 k~~l~LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke~---SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt--~l  157 (357)
                           |+....|...+..-.|.+.-+|.+++-.++...++.++.   -++-+......+  +| -|+=|.||.-..  ..
T Consensus       849 -----l~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~--~~-~~~dKe~Ek~~~rk~~  920 (1200)
T KOG0964|consen  849 -----LELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKK--DN-INFDKELEKLVRRKHM  920 (1200)
T ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh-hhhhHHHHHHHHHHHH
Confidence                 455555666666666666666665555555554442221   122222222211  12 333355554432  12


Q ss_pred             hhhhHHHHHH--------------------HHHHHHHHHHHHHHHh--hhhhhhh----hHHHHHHHHHHhhhhcccchh
Q 018386          158 INSKRAEVDR--------------------ANERIEKLLASTEQLQ--LSNNEKD----ETIAKLKTQIAQMETGSKKWN  211 (357)
Q Consensus       158 LK~K~~EvaQ--------------------AtE~iqKL~q~~EeLQ--~~nqeKD----deI~RLqak~aeMe~~~Kkk~  211 (357)
                      |.+|..|--+                    ..|=-++|..++++|+  +.+++|.    .....-+.+|++=..+.+.-+
T Consensus       921 Ll~KreE~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~ 1000 (1200)
T KOG0964|consen  921 LLKKREECCEKIRELGVLPEDAFEKYQDKKSKELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSK 1000 (1200)
T ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHhccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            3333333111                    1223378899999996  3444443    223333455555555667788


Q ss_pred             hHHHHHHHHHHH
Q 018386          212 TEISRLTQELEL  223 (357)
Q Consensus       212 eeIs~L~~eLe~  223 (357)
                      +-|+.|-..|+.
T Consensus      1001 ~sI~eLi~vLdq 1012 (1200)
T KOG0964|consen 1001 DSILELITVLDQ 1012 (1200)
T ss_pred             hHHHHHHHHHHH
Confidence            899999888865

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=86.42  E-value=52  Score=35.46  Aligned_cols=60  Identities=15%  Similarity=0.305  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----------------hhhhcccchhhHHHHHHHH
Q 018386          161 KRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIA----------------QMETGSKKWNTEISRLTQE  220 (357)
Q Consensus       161 K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~a----------------eMe~~~Kkk~eeIs~L~~e  220 (357)
                      ++.|..+=-+.++.+.+.++++....+.|++.+..|++++.                ||=.+.+|-+++|.+.-.+
T Consensus       438 ~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~D  513 (594)
T PF05667_consen  438 RESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSD  513 (594)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34455555567778888888888888888888888877755                4445555666666654433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=85.27  E-value=64  Score=37.31  Aligned_cols=117  Identities=23%  Similarity=0.243  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCC----------CCcch----hhHHhhhhhhhhhhhhh----Hhhhhh
Q 018386           92 LREASLLKLMLEYTDDQLADFMAWFDLLRQKPKD----------GEPKS----IEVSAFLDERAFLWNQY----KVMEND  153 (357)
Q Consensus        92 ~RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke----------~SeKd----kEVsALlaEKdFVWNQ~----k~ME~D  153 (357)
                      .|..+.++-.++.+|.-+.||+--+|..-..=.+          ..+|=    .+|-.|=|=.+ +-.|+    +-+|.|
T Consensus       416 ~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee-~~EQL~Esn~ele~D  494 (1243)
T KOG0971|consen  416 RRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEE-MNEQLQESNRELELD  494 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            4555666777778888889999888764443111          11221    12222211111 11222    345555


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386          154 LTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELEL  223 (357)
Q Consensus       154 yt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~  223 (357)
                      +.       .|+++|+-++..|++.++..|-...+.|.+|.+...-++       +.++.|..|.++-.+
T Consensus       495 Lr-------eEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva-------~Lqdqlqe~~dq~~S  550 (1243)
T KOG0971|consen  495 LR-------EELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVA-------HLQDQLQELTDQQES  550 (1243)
T ss_pred             HH-------HHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHhhhhh
Confidence            55       789999999999999999999999999999999998888       667777777775444

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.52  E-value=4.3  Score=39.74  Aligned_cols=60  Identities=18%  Similarity=0.236  Sum_probs=47.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHH
Q 018386          160 SKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQ  219 (357)
Q Consensus       160 ~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~  219 (357)
                      .=+.++..++..|+.|+..++.+|...++.+.+|.++++++.+.+...+..++.|-....
T Consensus        42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~  101 (265)
T COG3883          42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE  101 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334556778889999999999999999999999999999998766666666666654433

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=84.52  E-value=34  Score=31.76  Aligned_cols=92  Identities=12%  Similarity=0.179  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHhh
Q 018386           24 LKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLE  103 (357)
Q Consensus        24 Lr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~lE  103 (357)
                      |......+...-..|+.|+.+....-+    ++..++.+|..+..  ..++...+|+.+..  .|..-+.++.-....++
T Consensus        66 L~~~e~~~de~er~~k~lE~r~~~~ee----ri~~lE~~l~ea~~--~~ee~e~k~~E~~r--kl~~~E~~Le~aEeR~e  137 (237)
T PF00261_consen   66 LEEAEKRADESERARKVLENREQSDEE----RIEELEQQLKEAKR--RAEEAERKYEEVER--KLKVLEQELERAEERAE  137 (237)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHCHHHHHHHHH--HHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence            344444455555555556655544444    66667777776653  44666777774433  33334445555555566


Q ss_pred             hchhHHHHHHHHHHHHhcCC
Q 018386          104 YTDDQLADFMAWFDLLRQKP  123 (357)
Q Consensus       104 ~teDeL~DFka~~~~L~~~l  123 (357)
                      ..+.-+.++...|..+...|
T Consensus       138 ~~E~ki~eLE~el~~~~~~l  157 (237)
T PF00261_consen  138 AAESKIKELEEELKSVGNNL  157 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhchhHHHHHHHHHHHHHHH
Confidence            66655666655555555444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.94  E-value=86  Score=35.88  Aligned_cols=47  Identities=17%  Similarity=0.290  Sum_probs=31.4

Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386          179 TEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR  225 (357)
Q Consensus       179 ~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr  225 (357)
                      ..+|...--+|+..+.+|++++-+++..+..+.++|.++...|..||
T Consensus       530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk  576 (1118)
T KOG1029|consen  530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELK  576 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            44555566677777777777777777777777777766655554444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=83.89  E-value=87  Score=35.87  Aligned_cols=17  Identities=24%  Similarity=0.519  Sum_probs=11.6

Q ss_pred             hhhhhhhhHhhhhhHHH
Q 018386          140 RAFLWNQYKVMENDLTS  156 (357)
Q Consensus       140 KdFVWNQ~k~ME~Dyt~  156 (357)
                      +.=.++.|..++..|..
T Consensus       415 ~~~~~~~~~~l~~~~~~  431 (1201)
T PF12128_consen  415 REQIEEEYQALEQELRQ  431 (1201)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44557777777777764

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.61  E-value=4.7  Score=37.47  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=17.2

Q ss_pred             HHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386          194 AKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR  228 (357)
Q Consensus       194 ~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r  228 (357)
                      ..|+.....++..+.....+|..|+..++.+...+
T Consensus        66 e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~  100 (251)
T PF11932_consen   66 ENLEVYNEQLERQVASQEQELASLEQQIEQIEETR  100 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344445555555555555555555555444

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=83.53  E-value=62  Score=33.92  Aligned_cols=33  Identities=18%  Similarity=0.166  Sum_probs=24.4

Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCC
Q 018386           93 REASLLKLMLEYTDDQLADFMAWFDLLRQKPKD  125 (357)
Q Consensus        93 RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke  125 (357)
                      +...-+...++++......+...++.|.+.|.-
T Consensus       310 k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l  342 (569)
T PRK04778        310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTL  342 (569)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            334445567777778888899999999888654

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=83.53  E-value=13  Score=34.37  Aligned_cols=70  Identities=20%  Similarity=0.308  Sum_probs=47.7

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCC
Q 018386          156 SKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTAS  231 (357)
Q Consensus       156 ~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~  231 (357)
                      ..|+.++.++......+++|.+-+      .++.=.+...|+.++..++.-....+..|+.|+..|+..-++...+
T Consensus        89 ~klk~~~~el~k~~~~l~~L~~L~------~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rq  158 (194)
T PF15619_consen   89 RKLKDKDEELLKTKDELKHLKKLS------EDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQ  158 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            356666666666666665544332      2333455677777787888888888999999999998887765543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=83.04  E-value=48  Score=32.30  Aligned_cols=19  Identities=26%  Similarity=0.455  Sum_probs=12.8

Q ss_pred             hhHHHHHHHHHHHHHhhcC
Q 018386          211 NTEISRLTQELELLRKSRT  229 (357)
Q Consensus       211 ~eeIs~L~~eLe~lrk~r~  229 (357)
                      ..||.+|.++++.|-+.-+
T Consensus       275 ~~Ev~~Lk~~~~~Le~~~g  293 (325)
T PF08317_consen  275 RSEVKRLKAKVDALEKLTG  293 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHC
Confidence            3567777777777766655

>PRK04863 mukB cell division protein MukB; Provisional

Probab=82.90  E-value=58  Score=38.66  Aligned_cols=26  Identities=8%  Similarity=0.092  Sum_probs=15.8

Q ss_pred             hhhHHhhhhhhhhh-----hhhhHhhhhhHH
Q 018386          130 SIEVSAFLDERAFL-----WNQYKVMENDLT  155 (357)
Q Consensus       130 dkEVsALlaEKdFV-----WNQ~k~ME~Dyt  155 (357)
                      .+....++++.+.|     ||.++-...+|.
T Consensus       476 ~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~  506 (1486)
T PRK04863        476 EQAYQLVRKIAGEVSRSEAWDVARELLRRLR  506 (1486)
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHHHHHHHhH
Confidence            34444455555555     888877766664

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=82.79  E-value=63  Score=33.50  Aligned_cols=91  Identities=18%  Similarity=0.107  Sum_probs=46.9

Q ss_pred             hhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCC-CCcchhhH
Q 018386           55 DVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPKD-GEPKSIEV  133 (357)
Q Consensus        55 dv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke-~SeKdkEV  133 (357)
                      ....++.+|.+...++.+.+....-+    .-.++...++.+..-.-.-.+++|++-+.-||..+..++.. .+.=.--+
T Consensus       289 e~~~l~~Qi~~l~~e~~d~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~  364 (511)
T PF09787_consen  289 EIQLLERQIEQLRAELQDLEAQLEGE----QESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKL  364 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence            44455555555554444444322222    22233333333332222222378999999999999887544 23222222


Q ss_pred             HhhhhhhhhhhhhhHh
Q 018386          134 SAFLDERAFLWNQYKV  149 (357)
Q Consensus       134 sALlaEKdFVWNQ~k~  149 (357)
                      ..-..|+.++|||+..
T Consensus       365 ~~ke~E~q~lr~~l~~  380 (511)
T PF09787_consen  365 KEKESEIQKLRNQLSA  380 (511)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            2224577788888765

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=82.58  E-value=82  Score=34.63  Aligned_cols=66  Identities=17%  Similarity=0.279  Sum_probs=34.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386          158 INSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       158 LK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      |+.-..-++|++.+.++....++ -|...+++-..+..  .+...+....++-.++|..+-.++..+++
T Consensus       648 l~~l~~si~~lk~k~~~Q~~~i~-~~~~~~~~s~~L~~--~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~  713 (717)
T PF10168_consen  648 LQDLKASIEQLKKKLDYQQRQIE-SQKSPKKKSIVLSE--SQKRTIKEILKQQGEEIDELVKQIKNIKK  713 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-ccccccCCCccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666677666666554444 33333333222222  22222333344556778888777777765

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=82.55  E-value=6.3  Score=29.65  Aligned_cols=55  Identities=18%  Similarity=0.352  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386          172 IEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       172 iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      ..+..+|-......-+.|-..|..|+.++..++........++..|..+++.|+.
T Consensus         7 ~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~   61 (64)
T PF00170_consen    7 ERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS   61 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456666666777888888999999999998888888888899999988888864

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=82.20  E-value=59  Score=32.73  Aligned_cols=25  Identities=12%  Similarity=0.218  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018386           23 MLKSQQEQIETLVKEREILEDHLKM   47 (357)
Q Consensus        23 MLr~~q~QvEsL~~ER~~LEa~ik~   47 (357)
                      =+...++|+..|.+.+.+|.++++-
T Consensus        98 ~~~~~~~~~~~~~~~~~rL~a~~~~  122 (457)
T TIGR01000        98 QKQLLEQQLDNLKDQKKSLDTLKQS  122 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777788888888877754

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=82.19  E-value=95  Score=36.20  Aligned_cols=112  Identities=16%  Similarity=0.129  Sum_probs=62.7

Q ss_pred             CcccccchhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHH
Q 018386            3 KTTRSQASLERQKRDKILVKMLKSQ----QEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHL   78 (357)
Q Consensus         3 ~~~~s~~ss~r~~W~riLVkMLr~~----q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~   78 (357)
                      .+.-|+++++.. |+.=-|.-|..+    ..|+..|.. |.--.+.+..+-.+.-.+....+..+.++...+...+..-.
T Consensus       637 sGlmsGG~s~~~-wdek~~~~L~~~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~  714 (1141)
T KOG0018|consen  637 SGLMSGGSSGAK-WDEKEVDQLKEKKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQ  714 (1141)
T ss_pred             cceecCCccCCC-cCHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346678899955 998844444433    456677777 44455566777777777777777777777654444443222


Q ss_pred             HHHhhhhhhhchhhHHHHHHHHHhhhchhHHHHHHHHHHHHh
Q 018386           79 LDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLR  120 (357)
Q Consensus        79 ~EaAk~~l~LGlK~RE~~l~k~~lE~teDeL~DFka~~~~L~  120 (357)
                      .-.+..+    ...-++++|+..++..+..+.+++.....+.
T Consensus       715 ~~~~~i~----~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ve  752 (1141)
T KOG0018|consen  715 RTESEID----EFGPEISEIKRKLQNREGEMKELEERMNKVE  752 (1141)
T ss_pred             HHHHHHH----hhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222    2223444555566555544444444444443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=82.11  E-value=1.1e+02  Score=35.66  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018386           22 KMLKSQQEQIETLVKEREILEDHLKMQHEKWV   53 (357)
Q Consensus        22 kMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~   53 (357)
                      ..|....+.+..+..+=+-|+.+|+--.+.|.
T Consensus       221 ~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~  252 (1074)
T KOG0250|consen  221 ESLDHAKELIDLKEEEIKNLKKKIKEEEEKLD  252 (1074)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            44566677777777777777777766666554

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=81.97  E-value=37  Score=36.35  Aligned_cols=99  Identities=20%  Similarity=0.312  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018386          110 ADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEK  189 (357)
Q Consensus       110 ~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeK  189 (357)
                      ..|...|..|...+...   +.-.-.+-+|-.-+-+++...|++-    +....|...|+..+..|+   ++|...--.+
T Consensus       416 ~~Y~~RI~eLt~qlQ~a---dSKa~~f~~Ec~aL~~rL~~aE~ek----~~l~eeL~~a~~~i~~Lq---DEL~TTr~NY  485 (518)
T PF10212_consen  416 SYYMSRIEELTSQLQHA---DSKAVHFYAECRALQKRLESAEKEK----ESLEEELKEANQNISRLQ---DELETTRRNY  485 (518)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH---HHHHHHHhhH
Confidence            56677777666654321   1112223334444455666666533    345566777776666665   5666666677


Q ss_pred             hhHHHHHHHHHHhhhhcccchhhHHHHHH
Q 018386          190 DETIAKLKTQIAQMETGSKKWNTEISRLT  218 (357)
Q Consensus       190 DdeI~RLqak~aeMe~~~Kkk~eeIs~L~  218 (357)
                      .+.|+-+=.-++.|-....+-.+||..|.
T Consensus       486 E~QLs~MSEHLasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  486 EEQLSMMSEHLASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888888866544445555555544

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=81.86  E-value=84  Score=34.25  Aligned_cols=176  Identities=22%  Similarity=0.230  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHhhhch
Q 018386           27 QQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTD  106 (357)
Q Consensus        27 ~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~LGlK~RE~~l~k~~lE~te  106 (357)
                      ...+.|.|-++++.|-.-|.-| .+-.+||+       +|+.  .-+++.+-+.-++.++  -.=..++--.++.++..-
T Consensus       306 kEeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve-------~mn~--Er~~l~r~l~~i~~~~--d~l~k~vw~~~l~~~~~f  373 (581)
T KOG0995|consen  306 KEEEIEKLQKENDELKKQIELQ-GISGEDVE-------RMNL--ERNKLKRELNKIQSEL--DRLSKEVWELKLEIEDFF  373 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CCCHHHHH-------HHHH--HHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHH
Confidence            3456677888888887777666 44444444       3443  1233444443222221  111122222222222222


Q ss_pred             hH----HHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhh--hhhhhhHhhhhhHHH--------hhhhhHHHHHHHHHHH
Q 018386          107 DQ----LADFMAWFDLLRQKPKDGEPKSIEVSAFLDERA--FLWNQYKVMENDLTS--------KINSKRAEVDRANERI  172 (357)
Q Consensus       107 De----L~DFka~~~~L~~~lke~SeKdkEVsALlaEKd--FVWNQ~k~ME~Dyt~--------lLK~K~~EvaQAtE~i  172 (357)
                      ++    +.||...++.|.--            ++..-+|  |.-++...|.-||.+        ++....-+..+|...-
T Consensus       374 ~~le~~~~~~~~l~~~i~l~------------~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~  441 (581)
T KOG0995|consen  374 KELEKKFIDLNSLIRRIKLG------------IAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENEL  441 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHH------------HHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33    45566666555432            1111111  333344444444433        2334444555555555


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHHHh-----------hhhcccchhhHHHHHHHHHHHHHh
Q 018386          173 EKLLASTEQLQLSNNEKDETIAKLKTQIAQ-----------METGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       173 qKL~q~~EeLQ~~nqeKDdeI~RLqak~ae-----------Me~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      -.|+....++-+...++-...+.++.++.+           -+-+.++-+.||..|+.+|..+.-
T Consensus       442 ~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l  506 (581)
T KOG0995|consen  442 ETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKL  506 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555554444444444432           223344556677777777766543

>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN)

Probab=81.20  E-value=48  Score=31.05  Aligned_cols=51  Identities=22%  Similarity=0.109  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCCCCccccccccc
Q 018386          191 ETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTASDTPVLNRCTR  241 (357)
Q Consensus       191 deI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a~~tpvl~~ct~  241 (357)
                      .++.+|.+++..-+..+.+|+.+....-..|+.++..+-...+-+++.|-.
T Consensus       171 k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~~~~~~~~~~~Q~  221 (239)
T cd07658         171 KEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWESALRKGLNQYES  221 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            558889999988888889999999999999999999888777778877754

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=80.97  E-value=10  Score=40.80  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=13.6

Q ss_pred             hhhhcccchhhHHHHHHHHHHHHHhhc
Q 018386          202 QMETGSKKWNTEISRLTQELELLRKSR  228 (357)
Q Consensus       202 eMe~~~Kkk~eeIs~L~~eLe~lrk~r  228 (357)
                      .|-.+..+.+.++.++.-+++.+++.=
T Consensus       336 ~mn~Er~~l~r~l~~i~~~~d~l~k~v  362 (581)
T KOG0995|consen  336 RMNLERNKLKRELNKIQSELDRLSKEV  362 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455555555555555555543

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=80.43  E-value=1e+02  Score=34.29  Aligned_cols=72  Identities=21%  Similarity=0.315  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccch-------hhHHHHHHHHHHHHHhhc--CCCCcc--cccc
Q 018386          170 ERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKW-------NTEISRLTQELELLRKSR--TASDTP--VLNR  238 (357)
Q Consensus       170 E~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk-------~eeIs~L~~eLe~lrk~r--~a~~tp--vl~~  238 (357)
                      ..++.|...+..++.......+.|..|++++..|...+.+.       .+|+..++++|-.|-..=  ....||  ||-.
T Consensus       398 ~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRVmLD  477 (717)
T PF09730_consen  398 SEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRVMLD  477 (717)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHHH
Confidence            34455555555554444444556666666665555555443       344445566665543321  112666  5444


Q ss_pred             ccc
Q 018386          239 CTR  241 (357)
Q Consensus       239 ct~  241 (357)
                      +.+
T Consensus       478 ~yr  480 (717)
T PF09730_consen  478 YYR  480 (717)
T ss_pred             HHH
Confidence            444

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	357
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 3e-10
 Identities = 28/253 (11%), Positives = 78/253 (30%), Gaps = 52/253 (20%)

Query: 1   MGKTTRSQASLER-QKRDKILVKMLKSQQEQIETLVKEREILEDHLK--MQHEKW----- 52
           +      +  LE  QK    +     S+ +    +      ++  L+  ++ + +     
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 53  ----VSDVRLYE--DHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTD 106
               V + + +   +   ++        L+       +D +        SL    +  T 
Sbjct: 249 VLLNVQNAKAWNAFNLSCKI--------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 107 DQLADFMA-WFDL----LRQKPKDGEPKSIE-VSAFLDERAFLWNQYKVMENDLTSKINS 160
           D++   +  + D     L ++     P+ +  ++  + +    W+ +K +  D       
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD------- 353

Query: 161 KRAEVDRANERIEKLLASTEQLQLSNN----EKDETIAKLKTQIAQMETGSKKWNTEISR 216
              ++    E    +L   E  ++ +           A + T +  +      W   I  
Sbjct: 354 ---KLTTIIESSLNVLEPAEYRKMFDRLSVFPPS---AHIPTILLSL-----IWFDVIKS 402

Query: 217 LTQEL--ELLRKS 227
               +  +L + S
Sbjct: 403 DVMVVVNKLHKYS 415

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 7e-09
 Identities = 41/268 (15%), Positives = 79/268 (29%), Gaps = 86/268 (32%)

Query: 38  REILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASL 97
           ++IL        + +V +       +  M   I+++E I        D ++  K   +  
Sbjct: 19  KDILSVFE----DAFVDNFDCK--DVQDMPKSILSKEEI--------DHIIMSKDAVSGT 64

Query: 98  LKLMLEYTDDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDER-----AFLWNQYKVMEN 152
           L+L               F  L  K ++       V  F++E       FL +  K  + 
Sbjct: 65  LRL---------------FWTLLSKQEEM------VQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 153 D---LTSKINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQME----- 204
               +T     +R  +   N+   K           N  + +   KL+  + ++      
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKY----------NVSRLQPYLKLRQALLELRPAKNV 153

Query: 205 -----TGSKKWNTEISRLT----QELELLRK----------SRTASDTPVL----NRCTR 241
                 GS K     + +        ++  K              S   VL        +
Sbjct: 154 LIDGVLGSGK-----TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 242 IAGATTSNAGDSVQNRSSTAGIKGRLRK 269
           I    TS +  S   +     I+  LR+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRR 236

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 6/221 (2%)

Query: 12   ERQKRDKILVKMLKSQQEQIETLVKEREILEDHL-KMQHEK--WVSDVRLYEDHISQMKS 68
            E ++R + L    K  Q+Q+  L ++ E  E    K+Q EK      ++  ED I  M+ 
Sbjct: 938  EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997

Query: 69   EIVA-QELIHLLDAAKSDMVVGLKLREASLLKLMLEYT--DDQLADFMAWFDLLRQKPKD 125
            +     +   LL+   SD+   L   E     L       +  +++         +  ++
Sbjct: 998  QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057

Query: 126  GEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQLS 185
             E    ++     +      + +    +L +++  K  E+  A  R+E   +        
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117

Query: 186  NNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226
              E +  I+ L+  +   +    K   +   L++ELE L+ 
Sbjct: 1118 IRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKT 1158

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 38/224 (16%), Positives = 90/224 (40%), Gaps = 19/224 (8%)

Query: 5    TRSQASLERQKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHIS 64
              ++   E Q +D+ L +  K +Q++ E  +KE E  + H ++  EK             
Sbjct: 851  KVTRQEEEMQAKDEELQR-TKERQQKAEAELKELE--QKHTQLCEEK--------NLLQE 899

Query: 65   QMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQKPK 124
            ++++E           A   +M V L  ++  L +++ E    ++ +       L+ + K
Sbjct: 900  KLQAETELY-------AEAEEMRVRLAAKKQELEEILHEMEA-RIEEEEERSQQLQAEKK 951

Query: 125  DGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRAEVDRANERIEKLLASTEQLQL 184
              + + +++   L+E      + ++ +     KI     ++    ++  KL    + L+ 
Sbjct: 952  KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011

Query: 185  SNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSR 228
              ++    +A+ + +   +     K  + IS L   L+   KSR
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 33/227 (14%), Positives = 72/227 (31%), Gaps = 9/227 (3%)

Query: 3    KTTRSQASLERQKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDH 62
            K  R     +R +  +     L++         K + +L +H  +  +K V        +
Sbjct: 824  KFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHY 883

Query: 63   ISQMKSEIVAQELIHLLDAAKSDMVVGLKLREASLLKLMLEYTDDQLADFMAWFDLLRQK 122
               +K+ +  Q     + A +    + ++ R     K +    ++++       D   ++
Sbjct: 884  HRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943

Query: 123  PKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKINSKRA---EVDRANERIEKLLAST 179
             K    K   ++      +    + +     L       +     V    E I KL    
Sbjct: 944  YKSLLEK---MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000

Query: 180  EQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK 226
             Q Q      +E   K K +  Q+     +   + + L  E E L +
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLV---SELKEQNTLLKTEKEELNR 1044

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	357
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.78
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	95.08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.51
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	93.4
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	92.6
1zxa_A	67	CGMP-dependent protein kinase 1, alpha isozyme; pa	90.71
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	89.3
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	89.28
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	88.12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	87.97
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	87.91
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	87.86
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	87.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	86.69
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	83.58
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	82.38
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	82.01
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	81.56
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	81.45
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	81.38
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	81.25
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	80.45

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.78  E-value=0.12  Score=46.75  Aligned_cols=127  Identities=10%  Similarity=0.097  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCcchhhHHhhhhhhhhhhhhhHhhhhhHHHhh---hhhHHHHHHHHHHHHHHHHHHHHH
Q 018386          106 DDQLADFMAWFDLLRQKPKDGEPKSIEVSAFLDERAFLWNQYKVMENDLTSKI---NSKRAEVDRANERIEKLLASTEQL  182 (357)
Q Consensus       106 eDeL~DFka~~~~L~~~lke~SeKdkEVsALlaEKdFVWNQ~k~ME~Dyt~lL---K~K~~EvaQAtE~iqKL~q~~EeL  182 (357)
                      +.++.++++.+......+..++ ..+|..||..|-++.=.....+|.+...+.   ..++.+++.+.+.+..+...++.+
T Consensus        66 e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~  144 (256)
T 3na7_A           66 EQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL  144 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677888888888877776554 789999999998888777777776654443   333455555555555555555444


Q ss_pred             hhhhhhhhhHHHHHHHHHHhhhhcccchhhHH-HHHHHHHHHHHhh-cCCCCcccc
Q 018386          183 QLSNNEKDETIAKLKTQIAQMETGSKKWNTEI-SRLTQELELLRKS-RTASDTPVL  236 (357)
Q Consensus       183 Q~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeI-s~L~~eLe~lrk~-r~a~~tpvl  236 (357)
                      +.   +-|..+..+++++..+.....+.-..| ..|-..-+.+|+. .+--|-||-
T Consensus       145 ~~---~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~~~~g~avv~v~  197 (256)
T 3na7_A          145 ES---LVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWAKNTSIVTIK  197 (256)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHGGGSEEECB
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCceEEEee
Confidence            42   233444444444443222222222221 1344555666653 333345543

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=95.08  E-value=0.023  Score=44.74  Aligned_cols=49  Identities=27%  Similarity=0.279  Sum_probs=42.9

Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386          178 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       178 ~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      ++.+||..-++|+++|...++-+.+++....+++.+|..|..+|-.+|+
T Consensus        20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS   68 (72)
T 3nmd_A           20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4778888888999999998888999999889999999999999887754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.51  E-value=0.098  Score=50.49  Aligned_cols=60  Identities=20%  Similarity=0.200  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386          166 DRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR  225 (357)
Q Consensus       166 aQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr  225 (357)
                      .+..+.++++...++.++...+++.+++..++.++.+|+...++.++.+.+|.+|++.++
T Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~  571 (597)
T 3oja_B          512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR  571 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            333444455555555555555555555665666666566555555555555555555554

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=93.40  E-value=0.47  Score=36.62  Aligned_cols=73  Identities=18%  Similarity=0.290  Sum_probs=66.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386          157 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT  229 (357)
Q Consensus       157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~  229 (357)
                      ++..-+.+...|.+.+..+...++.....+....++|.-|+-++..+|.+..+..+........|+...+.+.
T Consensus         7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~   79 (81)
T 1ic2_A            7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKAT   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555677889999999999999999999999999999999999999999999999999999999999988765

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=92.60  E-value=5.3  Score=48.38  Aligned_cols=21  Identities=5%  Similarity=0.417  Sum_probs=12.2

Q ss_pred             hhcccchhhHHHHHHHHHHHH
Q 018386          204 ETGSKKWNTEISRLTQELELL  224 (357)
Q Consensus       204 e~~~Kkk~eeIs~L~~eLe~l  224 (357)
                      ..+...|.+.+..|..++..|
T Consensus      2083 ~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A         2083 NSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccHHHHHHHHHHHHHhc
Confidence            334445666666666666554

>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}

Probab=90.71  E-value=0.22  Score=38.63  Aligned_cols=45  Identities=20%  Similarity=0.223  Sum_probs=32.4

Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386          178 STEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT  229 (357)
Q Consensus       178 ~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~  229 (357)
                      .+|+++..-+.||..|..|+..+.       .++++|..|..+|...++-=.
T Consensus        12 ~~e~~~~~i~~Kde~I~eLE~~L~-------~kd~eI~eLr~~LdK~qsVl~   56 (67)
T 1zxa_A           12 LEEDFAKILMLKEERIKELEKRLS-------EKEEEIQELKRKLHKCQSVLP   56 (67)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcc
Confidence            467888888999999999999987       899999999988877766433

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=89.30  E-value=1.6  Score=34.92  Aligned_cols=73  Identities=19%  Similarity=0.255  Sum_probs=62.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386          157 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT  229 (357)
Q Consensus       157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~  229 (357)
                      ++...+.+...|.+.+..+.+.+..+...+.+++++|.-|+-++.-++....+..+........|+...+.++
T Consensus        10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~   82 (101)
T 3u59_A           10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT   82 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555677888999999999999999998899999999999999998888888888888888888888877765

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=89.28  E-value=1.3  Score=35.43  Aligned_cols=59  Identities=25%  Similarity=0.341  Sum_probs=42.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------hhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 018386          157 KINSKRAEVDRANERIEKLLASTEQLQLSNNE--------------KDETIAKLKTQIAQMETGSKKWNTEISRLTQELE  222 (357)
Q Consensus       157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqe--------------KDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe  222 (357)
                      +|..=+.-|.+|-+.|+-|+-.+++|...|..              .+.++.+|+.+.+       .|+++|..|-+.++
T Consensus         7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~-------~wq~Rl~~LLgk~e   79 (81)
T 2jee_A            7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN-------GWQERLQALLGRME   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhh
Confidence            44455567888888888888888887655443              6667777777776       88888888877654

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=88.12  E-value=2  Score=34.49  Aligned_cols=73  Identities=15%  Similarity=0.229  Sum_probs=60.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcC
Q 018386          157 KINSKRAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRT  229 (357)
Q Consensus       157 lLK~K~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~  229 (357)
                      ++..-+.+..-|.+.+..+...+..+...+.+++++|.-|+-++.-+|.+..+..+......+.|+...+.++
T Consensus        10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~   82 (101)
T 3u1c_A           10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA   82 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455567888899999999999999999999999999999999998888888888888888888877766554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=87.97  E-value=31  Score=37.55  Aligned_cols=29  Identities=7%  Similarity=0.240  Sum_probs=17.8

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 018386          156 SKINSKRAEVDRANERIEKLLASTEQLQL  184 (357)
Q Consensus       156 ~lLK~K~~EvaQAtE~iqKL~q~~EeLQ~  184 (357)
                      ..+++.+.|++...+.++++....+.|+.
T Consensus       984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee 1012 (1080)
T 2dfs_A          984 NRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666666666666643

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=87.91  E-value=9.9  Score=31.04  Aligned_cols=31  Identities=13%  Similarity=0.141  Sum_probs=11.6

Q ss_pred             HHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 018386          193 IAKLKTQIAQMETGSKKWNTEISRLTQELEL  223 (357)
Q Consensus       193 I~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~  223 (357)
                      |..+...+...+........++..+...+..
T Consensus       211 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  241 (284)
T 1c1g_A          211 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEF  241 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333444444444333

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=87.86  E-value=5.4  Score=33.53  Aligned_cols=74  Identities=24%  Similarity=0.308  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHHHhhhhhhh
Q 018386           12 ERQKRDKILVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVAQELIHLLDAAKSDMVV   88 (357)
Q Consensus        12 ~r~~W~riLVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~eE~~~~~EaAk~~l~L   88 (357)
                      -|..|... -.|+++.+.|++.+.++|+.|++.++..-+--...|-.|.++++--..  .-.++++.+..++.++.-
T Consensus         4 t~~~~~~l-q~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~--~L~~Lqq~fsq~q~~vq~   77 (112)
T 1x79_B            4 TRDQVKKL-QLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEI--LLEELQQGLSQAKRDVQE   77 (112)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            36778775 457799999999999999999999877777666667777777665443  235666666666665543

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=87.42  E-value=3.5  Score=37.14  Aligned_cols=77  Identities=13%  Similarity=0.202  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhhcCC---CCc-cccccc
Q 018386          164 EVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRKSRTA---SDT-PVLNRC  239 (357)
Q Consensus       164 EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk~r~a---~~t-pvl~~c  239 (357)
                      +...+.+.|..+...++.++..-.+....+..+++++.   ....+.+..+..+..+++.++..|..   .+- ++|..=
T Consensus       105 ~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~---~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Y  181 (256)
T 3na7_A          105 RSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL---ELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFY  181 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            34444555555555555555444444455555555443   22345566777777777777766642   233 377666


Q ss_pred             cccc
Q 018386          240 TRIA  243 (357)
Q Consensus       240 t~~~  243 (357)
                      .+|.
T Consensus       182 erir  185 (256)
T 3na7_A          182 ERIR  185 (256)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.69  E-value=7  Score=37.63  Aligned_cols=116  Identities=13%  Similarity=0.112  Sum_probs=56.1

Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHhcCCCCCC-cchhhHHhhhhhhhhhhhhhHhhhhhHHH---hhhhhHHHHHHH
Q 018386           93 REASLLKLMLEYTDDQLADFMAWFDLLRQKPKDGE-PKSIEVSAFLDERAFLWNQYKVMENDLTS---KINSKRAEVDRA  168 (357)
Q Consensus        93 RE~~l~k~~lE~teDeL~DFka~~~~L~~~lke~S-eKdkEVsALlaEKdFVWNQ~k~ME~Dyt~---lLK~K~~EvaQA  168 (357)
                      .+...++......+..+...+..++...+.+...- +-......|-++       ++-++.++..   .+..-+.++.+=
T Consensus       463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  535 (597)
T 3oja_B          463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKV-------FTHLKERQAFKLRETQARRTEADAK  535 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHH-------HHHHHhhhhhhHHHHHHHHHhhhhh
Confidence            44444444455555667777777777766655321 111111111111       1222222222   222222233333


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Q 018386          169 NERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELE  222 (357)
Q Consensus       169 tE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe  222 (357)
                      .+..+++.+.+++++..-++.-+.+.+|+.+++       .++.+|.+|.++++
T Consensus       536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~-------~~~~~~~~l~~~~~  582 (597)
T 3oja_B          536 QKETEDLEQENIALEKQLDNKRAKQAELRQETS-------LKRQKVKQLEAKKN  582 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTC
T ss_pred             hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence            345555556666666555555666666666655       56666666666554

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=83.58  E-value=5.7  Score=31.58  Aligned_cols=64  Identities=23%  Similarity=0.404  Sum_probs=51.4

Q ss_pred             Hhhhhh-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386          156 SKINSK-RAEVDRANERIEKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       156 ~lLK~K-~~EvaQAtE~iqKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      ++|+.+ +-.+.|+...++-|..+.++|-.-.++=++.|.||+.+-+       ..+.+|..|.+..+.|-+
T Consensus        10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~-------~l~~ni~~lk~K~~EL~~   74 (78)
T 3iv1_A           10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVA-------EVDKNIELLKKKDEELSS   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            344433 3467899999999999999999888888889999988887       667788888888877754

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=82.38  E-value=2.9  Score=30.54  Aligned_cols=52  Identities=13%  Similarity=0.229  Sum_probs=38.9

Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386          175 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       175 L~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      +..|-...+.+-+.|-..|..|+.++..++..-.....+|+.|..|+..|+.
T Consensus         6 ~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~   57 (61)
T 1t2k_D            6 LERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ   57 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445566667778888888888888888888888888888888887764

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=82.01  E-value=11  Score=40.91  Aligned_cols=15  Identities=27%  Similarity=0.229  Sum_probs=8.1

Q ss_pred             hHHHHHHHHHHHHHh
Q 018386          212 TEISRLTQELELLRK  226 (357)
Q Consensus       212 eeIs~L~~eLe~lrk  226 (357)
                      ++--.|..|++.-|+
T Consensus      1063 ~~~~~~~~~~~~~~~ 1077 (1080)
T 2dfs_A         1063 EETKQLELDLNDERL 1077 (1080)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444455556665554

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=81.56  E-value=2.9  Score=34.48  Aligned_cols=53  Identities=23%  Similarity=0.342  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHH
Q 018386          173 EKLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLR  225 (357)
Q Consensus       173 qKL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lr  225 (357)
                      .+|...+.+|++.....+.++.+|+.++.+-.........+...++.|||.|=
T Consensus         8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT   60 (97)
T 2eqb_B            8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT   60 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666777777779999999999999888888888888888888888773

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=81.45  E-value=1.6  Score=32.55  Aligned_cols=53  Identities=13%  Similarity=0.218  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386          174 KLLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       174 KL~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      |.+.|-......-++|-+++..|+.++.+++..-.....+|+.|+.|++.|+.
T Consensus         6 Kr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~   58 (63)
T 1ci6_A            6 KMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD   58 (63)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555666678888888888888888888888888999999999888874

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=81.38  E-value=2.2  Score=30.03  Aligned_cols=28  Identities=32%  Similarity=0.437  Sum_probs=23.5

Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 018386          175 LLASTEQLQLSNNEKDETIAKLKTQIAQ  202 (357)
Q Consensus       175 L~q~~EeLQ~~nqeKDdeI~RLqak~ae  202 (357)
                      .++.+|+|+..-..||++|.+|+.+-.+
T Consensus         5 ~L~ENekLhk~ie~KdeeIa~Lk~eN~e   32 (37)
T 1t6f_A            5 ALKENEKLHKEIEQKDNEIARLKKENKE   32 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            5678899999999999999999887543

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=81.25  E-value=21  Score=29.39  Aligned_cols=83  Identities=14%  Similarity=0.259  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhHHhHHHH--HHHHHHHHHhh--hhhhhchhhHHH
Q 018386           20 LVKMLKSQQEQIETLVKEREILEDHLKMQHEKWVSDVRLYEDHISQMKSEIVA--QELIHLLDAAK--SDMVVGLKLREA   95 (357)
Q Consensus        20 LVkMLr~~q~QvEsL~~ER~~LEa~ik~QhE~W~sdv~~lqdrLsqm~~el~~--eE~~~~~EaAk--~~l~LGlK~RE~   95 (357)
                      |-..++.-+.++++|..-+..||..|.......-..+..+++.|..+..++..  .+|.+.+...+  +|+.+++ +-|+
T Consensus        43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~L-d~EI  121 (131)
T 3tnu_A           43 LRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRL-EQEI  121 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            45556888899999999999999999777666666777777777776665544  45555444333  2333444 3577


Q ss_pred             HHHHHHhh
Q 018386           96 SLLKLMLE  103 (357)
Q Consensus        96 ~l~k~~lE  103 (357)
                      .-|.+|||
T Consensus       122 atYRkLLE  129 (131)
T 3tnu_A          122 ATYRRLLE  129 (131)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhHC
Confidence            78888876

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=80.45  E-value=4  Score=30.21  Aligned_cols=52  Identities=23%  Similarity=0.213  Sum_probs=37.3

Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 018386          175 LLASTEQLQLSNNEKDETIAKLKTQIAQMETGSKKWNTEISRLTQELELLRK  226 (357)
Q Consensus       175 L~q~~EeLQ~~nqeKDdeI~RLqak~aeMe~~~Kkk~eeIs~L~~eLe~lrk  226 (357)
                      +..|-...+..-+.|-+.|..|+.++..++..-.....+|+.|..++..|+.
T Consensus         7 rerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~   58 (63)
T 2wt7_A            7 RERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF   58 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555566667777777777777777777777777888888888777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00