Citrus Sinensis ID: 018389

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MKMTITFLQRSTTTLRSLVVNSHFVSRVTSYCSRASNDFIEENERPTSSRSYSSRTNLSPLLSSKGPHFGGYNVELVDDETWQVSAGLAHAWRGLDEDKEAKSDVNVVDDDDDATSFEGDSDFDEIDNMRIRGDLFYKLDKDSKEFEEYSFDFHRRKSSKTKEGNKDSEKKEASKAKTDKKECQKKEALKRKSDAKESKRKESPRPNLASRDDEFNKIVMSDDNVEKRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVKLKQRKQKKASYRPAS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHccccHHHHHccccccccccccccccccccccccccccHHccccEEEEccccHHHHccccccccccccccccccccHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccHHHHHHcccHHHHHHHccccccccccccccccEEEEEEEcccEEEEEEEEccccEEEEEEccccHHHHHcccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHcEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHcccccccHHHccccccccccccccccccccccHHHHHHcHHccccEEEEccccccHEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHccccccccccccccccccEEEEEEEcccEEEEEEEEccccEEEEEEccccHHHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEccccccEEccHHHHHHHHHHHcccEEEEEEEEcccccccccccc
Coil and Loop (DISEMBL)
MKMTITFLQRSTTTLRSLVVNSHFVSRVTSYCSrasndfieenerptssrsyssrtnlspllsskgphfggynvelvddetwQVSAGLAHawrgldedkeaksdvnvvdddddatsfegdsdfdeidnmRIRGDLFYKLDKDSKEFEEYSFDFhrrkssktkegnkdsEKKEASKAKTDKKECQKKEALKRKSDakeskrkesprpnlasrddefnkivmsddnvekrvrtptfnqltapyhepfcldiYISKASVRACIVHRVTSKVVVVAHSISkdmkfdldstrnaTACAAVGGILAQRALaddihdvvytprkgekleGKLQIVLQAIIDNGVNVKVKLKQRkqkkasyrpas
Flexible Loop (DISEMBL)
mkmtitflqrstttlrslvvnsHFVSRVTSycsrasndfieenerptssrsyssrtnlSPLLSSKGPHFGGYNVELVDDETWQVSAGLAHawrgldedkeaksdvnvvdddddatsfegdsdfdeidnMRIRGDLFYKLDKDSKEFEeysfdfhrrkssktkegnkdsekkeaskaktdkkecqkkealkrksdakeskrkesprpnlasrddefnkivmsddnvekrvrtptfnqltapyhePFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAiidngvnvkvklkqrkqkkasyrpas
Low Complexity Region (SEG)
MKMTITFLQRSTTTLRSLVVNSHFVSRVTSYCSRASNDFIEENERPtssrsyssrtNLSPLLSSKGPHFGGYNVELVDDETWQVSAGLAHAWRGLDEDKEAKSdvnvvdddddATSFEGDSDFDEIDNMRIRGDLFYKLDKDSKEFEEYSFDFHRRKSSKTKEGNkdsekkeaskaktdkkECQKKEALKRKSDAKESKRKESPRPNLASRDDEFNKIVMSDDNVEKRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNvkvklkqrkqkkASYRPAS
Disordered region (IsUnstruct)
****ITFLQRSTTTLRSLVVNSHFVSRVTSYCSR*********************************HFGGYNVELVDDETWQVSAGLAHAWRGL******************************IDNMRIRGDLFYKLD****************************************************************************************VRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVK***************
Disordered Region (DISOPRED)
****I**LQRSTTTLRSLVVNSHFVSRVTSYCSRA***********************************GYNVELVDDETWQVSAGLAHAWR************************EGDSDFDEIDNMRIRGDLFYKLDKDSKEFEEYSF****************************************************************************************PYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISK*********RNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVK***************
Disordered Region (DISEMBL)
MKMTITFLQRSTTTLRSLVVNSHFVSRVTSYCSRASNDFIE***************NLSPLLSSKGPHFGGYNVELVDDETWQVSAGLAHAWRGLDEDKEAKSDVNVVDDDDDATSFEGDSDFDEIDNMRIRGDLFYKLDKDSKEFEEYSFDF*******************************************************ASRDDEFNKIVMSDDNVEKRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVK***************
Disordered Region (DISPRO)
*KMTITFLQRSTTTLRSLVVNSHFVSRVTSYCSRASND*********************PLLSSKGPHFGGYNVELVDDETWQVSAGL*****************************EGDSDFDEIDNMRIRGDLFYKLDKDSKEFEEYSFDFH******************************************************************************TFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVKLKQR***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMTITFLQRSTTTLRSLVVNSHFVSRVTSYCSRASNDFIEENERPTSSRSYSSRTNLSPLLSSKGPHFGGYNVELVDDETWQVSAGLAHAWRGLDEDKEAKSDVNVVDDDDDATSFEGDSDFDEIDNMRIRGDLFYKLDKDSKEFEEYSFDFHRRKSSKTKEGNxxxxxxxxxxxxxxxxxxxxxEALKRKSDAKESKRKESPRPNLASRDDEFNKIVMSDDNVEKRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVKLKQRKQKKASYRPAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	357	2.2.26 [Sep-21-2011]
Q9H0U6	180	39S ribosomal protein L18	yes	no	0.260	0.516	0.329	2e-05
Q9CQL5	180	39S ribosomal protein L18	yes	no	0.226	0.45	0.333	5e-05
Q3ZBR7	180	39S ribosomal protein L18	yes	no	0.252	0.5	0.329	0.0002
B7KI02	120	50S ribosomal protein L18	yes	no	0.254	0.758	0.315	0.0002
A7HM36	122	50S ribosomal protein L18	yes	no	0.296	0.868	0.312	0.0002
Q3A6N1	122	50S ribosomal protein L18	yes	no	0.254	0.745	0.326	0.0004
P73305	120	50S ribosomal protein L18	N/A	no	0.254	0.758	0.304	0.0006

>sp|Q9H0U6|RM18_HUMAN 39S ribosomal protein L18, mitochondrial OS=Homo sapiens GN=MRPL18 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
           L +  ++  V A + H+   KVVV A +    +K  L STRN  AC ++G +LAQR L  
Sbjct: 81  LRVIRTQHHVEALVEHQ-NGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEA 139

Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVK 340
            I+ +VY P   E     ++ +  A+ + GV ++
Sbjct: 140 GINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLR 173

Together with thiosulfate sulfurtransferase (TST), acts as a mitochondrial import factor for the cytosolic 5S rRNA. The precursor form shows RNA chaperone activity; is able to fold the 5S rRNA into an import-competent conformation that is recognized by rhodanese (TST). Both the cytoplasmic and mitochondrial forms are able to bind to the helix IV-loop D in the gamma domain of the 5S rRNA.
Homo sapiens (taxid: 9606)

>sp|Q9CQL5|RM18_MOUSE 39S ribosomal protein L18, mitochondrial OS=Mus musculus GN=Mrpl18 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%)

Query: 260 IVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGE 319
            V  +  +VVV A +    +K  L STRN  AC ++G +LAQR L   I+ +VY P   E
Sbjct: 93  FVEHLNGQVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWE 152

Query: 320 KLEGKLQIVLQAIIDNGVNVK 340
                ++ +  A+ ++GV ++
Sbjct: 153 ASSDSIKRLQNAMTESGVMLR 173

Together with thiosulfate sulfurtransferase (TST), acts as a mitochondrial import factor for the cytosolic 5S rRNA. The precursor form shows RNA chaperone activity; is able to fold the 5S rRNA into an import-competent conformation that is recognized by rhodanese (TST). Both the cytoplasmic and mitochondrial forms are able to bind to the helix IV-loop D in the gamma domain of the 5S rRNA.

Mus musculus (taxid: 10090)

>sp|Q3ZBR7|RM18_BOVIN 39S ribosomal protein L18, mitochondrial OS=Bos taurus GN=MRPL18 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
           L +  S+  + A + HR   +VVV A +    +K  L ST++  AC +VG +LAQR L  
Sbjct: 81  LRVIRSQHHIEALVEHR-NGQVVVSASTREWAIKKHLYSTKSVVACESVGRVLAQRCLEA 139

Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
            I+ +VY P   E     ++ +   +I+ GV
Sbjct: 140 GINFMVYQPTPWEAASDSMKRLQIGMIEGGV 170

Together with thiosulfate sulfurtransferase (TST), acts as a mitochondrial import factor for the cytosolic 5S rRNA. The precursor form shows RNA chaperone activity; is able to fold the 5S rRNA into an import-competent conformation that is recognized by rhodanese (TST). Both the cytoplasmic and mitochondrial forms are able to bind to the helix IV-loop D in the gamma domain of the 5S rRNA.

Bos taurus (taxid: 9913)

>sp|B7KI02|RL18_CYAP7 50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 7424) GN=rplR PE=3 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
           L ++ S   + A ++  V    +V A ++ KD+K +  S     A  AVG ++AQRALA 
Sbjct: 29  LAVFRSNNHIYAQVIDDVAQHTLVAASTLDKDLKGEFSSGATCEASEAVGKLVAQRALAK 88

Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
            I  VV+  R G    G+++ + QA  + G++
Sbjct: 89  GIEKVVF-DRGGNLYHGRIRALAQAAREAGLD 119

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

>sp|A7HM36|RL18_FERNB 50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplR PE=3 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 6/112 (5%)

Query: 227 KRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDST 286
           KR+R   F     P      L ++ S+  + A I+       +V A ++ K MK  L  T
Sbjct: 16  KRLRKKIFGTPERPR-----LAVFRSEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKT 70

Query: 287 RNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
            N TA   VG ++A+RALA  I +VV+  R G K  G+++ +  A  + G+ 
Sbjct: 71  WNITAAKEVGKLIAERALAKGIKEVVF-DRGGFKYHGRVKALADAAREAGLK 121

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) (taxid: 381764)

>sp|Q3A6N1|RL18_PELCD 50S ribosomal protein L18 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rplR PE=3 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
           L ++ S   + A I+  VT K +V A +++ D+   L++T N  A  AVG  +AQ+AL  
Sbjct: 31  LCVFRSAKHIYAQIIEDVTGKTLVSASTVNSDVVEGLENTGNVEAAKAVGKAIAQKALGM 90

Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
           DI +VV+  R G    G+++ + +A  + G++
Sbjct: 91  DIKNVVF-DRNGFLYHGRVKTLAEAAREAGLS 121

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) (taxid: 338963)

>sp|P73305|RL18_SYNY3 50S ribosomal protein L18 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rplR PE=3 SV=1

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
           L ++ S   + A ++  V    +  A ++  D+K  L ST    A A VG ++AQRA+A 
Sbjct: 29  LAVFRSNDHIYAQVIDDVAQHTLAAASTLDPDLKKSLSSTATQEASAEVGKLVAQRAIAK 88

Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
            I+ VV+  R G+   G+++ + +A  + G+N
Sbjct: 89  GINQVVF-DRGGKLYHGRVKALAEAAREAGLN 119

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
224099809	356	predicted protein [Populus trichocarpa]	0.887	0.890	0.627	1e-115
225432670	348	PREDICTED: uncharacterized protein LOC10	0.927	0.951	0.559	1e-99
356540329	329	PREDICTED: uncharacterized protein LOC10	0.859	0.933	0.534	1e-87
449447649	334	PREDICTED: uncharacterized protein LOC10	0.871	0.931	0.527	5e-87
357480871	404	50S ribosomal protein L18 [Medicago trun	0.809	0.715	0.559	1e-83
15229493	311	50S ribosomal protein L18-like protein [	0.745	0.855	0.534	1e-69
297830972	311	structural constituent of ribosome [Arab	0.677	0.778	0.561	1e-69
326527543	327	predicted protein [Hordeum vulgare subsp	0.666	0.727	0.473	2e-59
242082265	345	hypothetical protein SORBIDRAFT_07g02772	0.683	0.707	0.480	8e-59
255552181	140	structural constituent of ribosome, puta	0.355	0.907	0.834	2e-58

>gi|224099809|ref|XP_002311628.1| predicted protein [Populus trichocarpa] gi|222851448|gb|EEE88995.1| predicted protein [Populus trichocarpa]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/344 (62%), Positives = 257/344 (74%), Gaps = 27/344 (7%)

Query: 20  VNSHFVSRVTSYCSRAS------NDFIEENERPTSSRSYSSRTNLSPLLSSKGPHFGGYN 73
           ++SHF+SRV+S+CS+AS      N+  E+      S SYSS+ + SPLL    P+  GYN
Sbjct: 16  LSSHFLSRVSSFCSKASTTIDKANETTEQASLQERSTSYSSKIHFSPLLGDSRPNLDGYN 75

Query: 74  VELVDDETWQVSAGLAHAWRGLDEDKEAKSDVNVVDDD-DDATSFEGDSDFDEIDNMRIR 132
           +ELVDD+ WQVS+ L HAWRGLD +KEAKS +    +  DD  S +G+ DFDEIDNMRIR
Sbjct: 76  IELVDDDAWQVSSSLVHAWRGLDREKEAKSVIEAFGEQFDDVKSLQGNPDFDEIDNMRIR 135

Query: 133 GDLFYKLDKDSKEFEEYSFDFHRRKSSKTKEGNKDSEKKEASKAKTDKKECQKKEALKRK 192
           G+LFYKLD+DSKEFEEYSFDFHR+ S + K+  K +EKKE+SK               + 
Sbjct: 136 GNLFYKLDRDSKEFEEYSFDFHRKNSWRRKDDPKGNEKKESSK---------------KN 180

Query: 193 SDAKESKRKESPRPNLASRDDEFNKIVMSDDNV---EKRVRTPTFNQLTAPYHEPFCLDI 249
             +KESKRKE+   N A   D +  +   D +    +K++RTPTFNQLT PYHEPFCLDI
Sbjct: 181 ESSKESKRKENRSCNSAF--DVYTLVSNMDSSGGAEKKKIRTPTFNQLTGPYHEPFCLDI 238

Query: 250 YISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIH 309
           YISKASVRAC++HRVTSKVV VAHSISKD KFDL ST+NATACAAVGGILAQRALADDIH
Sbjct: 239 YISKASVRACVIHRVTSKVVAVAHSISKDFKFDLASTKNATACAAVGGILAQRALADDIH 298

Query: 310 DVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVKLKQRKQKKASY 353
           DVVYTPRKGE+LEGKLQIVLQAIIDNG+NVKVKLKQRK  KA +
Sbjct: 299 DVVYTPRKGERLEGKLQIVLQAIIDNGINVKVKLKQRKPSKARF 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432670|ref|XP_002278526.1| PREDICTED: uncharacterized protein LOC100249372 [Vitis vinifera] gi|297737055|emb|CBI26256.3| unnamed protein product [Vitis vinifera]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 203/363 (55%), Positives = 245/363 (67%), Gaps = 32/363 (8%)

Query: 3   MTITFLQRSTTTLRSLVVNSHFVSRVTSYCSRASNDFIEENE---------RPTSSRSYS 53
           M    L+R  T+  S + NSHF+S   ++C R S    +E E         R  S  +YS
Sbjct: 1   MAFVLLRRRITS--SSITNSHFLSGARNFCLRVSTFLDKEKEATQSALDDNRKMSWGNYS 58

Query: 54  SRTNLSPLLSSKGPHFGGYNVELVDDETWQVSAGLAHAWR-GLDEDKEAKSDVNVVDDDD 112
           S  +L  L S  G +  GY++ELVD +TW+VS+GLA AWR G    +  K  V+  +   
Sbjct: 59  SEIHLPSLYSHGGLYPDGYDIELVDPDTWRVSSGLAQAWRDGPSGRRVVKGAVD--EQIH 116

Query: 113 DATSFEGDSDFDEIDNMRIRGDLFYKLDKDSKEFEEYSFDFHRRKSSKTKEGNKDSEKKE 172
           ++ SFE D DFDEI++MRI G LFYKLD+DSKEFEEY+ DFHR+KSSK K   K+S+K+ 
Sbjct: 117 ESPSFEADLDFDEIEDMRIYGSLFYKLDRDSKEFEEYNLDFHRKKSSKNKGDKKESKKEN 176

Query: 173 ASKAKTDKKECQKKEALKRKSDAKESKRKESPRPNLASRDDEFNKIVMSDDNVEKRVRTP 232
            ++   + ++  K   + +  D             L  RD            VEK++RTP
Sbjct: 177 PTQNSPNSEKLPKLPKVVKSKDHIFL---------LDGRDSSL---------VEKKLRTP 218

Query: 233 TFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATAC 292
           TFNQLTAPYHEPFCLDI+ISK SVRACI+HRVTSKVV VAHSISKDMKFDL STRN TAC
Sbjct: 219 TFNQLTAPYHEPFCLDIFISKGSVRACIIHRVTSKVVAVAHSISKDMKFDLTSTRNVTAC 278

Query: 293 AAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVKLKQRKQKKAS 352
           AAVG ILAQRALADDIHD VYTPRKG+KLEGKLQIVLQ+IIDNGVNVKVKLKQRK KKAS
Sbjct: 279 AAVGRILAQRALADDIHDTVYTPRKGDKLEGKLQIVLQSIIDNGVNVKVKLKQRKTKKAS 338

Query: 353 YRP 355
           + P
Sbjct: 339 HLP 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540329|ref|XP_003538642.1| PREDICTED: uncharacterized protein LOC100802391 [Glycine max]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 176/329 (53%), Positives = 218/329 (66%), Gaps = 22/329 (6%)

Query: 23  HFVSRVTSYCSRASNDFIEENERPTSS--RSYSSRTNLSPLLSSKGPHFGGYNVELVDDE 80
           +F+SR  + C ++      ++    +S    YS+  +LSP  S       G+++ELVD +
Sbjct: 16  NFLSRTFNLCFKSLTTIPNKDVEAAASLPSEYSTSPHLSPFFSDFNHPSTGFDIELVDHD 75

Query: 81  TWQVSAGLAHAWRGLDEDKEAKSDVNVVDDDDDATSFEGDSDFDEIDNMRIRGDLFYKLD 140
            W VS+G+A AWR             V  +  D    EG+ DF++IDNMR+RG+LFYKL+
Sbjct: 76  AWAVSSGVAQAWREPASRATTSFGPQVTGEALD-DHVEGELDFEDIDNMRVRGNLFYKLE 134

Query: 141 KDSKEFEEYSFDFHRRKSSKTKEGNKDSEKKEASKAKTDKKECQKKEALKRKSDAKESKR 200
           + SKEFEEY+ DFHR+KSSK KE        E +KAKT      K   L +  +   SK 
Sbjct: 135 RSSKEFEEYNLDFHRKKSSKRKE--------EVNKAKTTPNVVSKDHKLPKVDELTRSK- 185

Query: 201 KESPRPNLASRDDEFNKIVMSDDNVEKRVRTPTFNQLTAPYHEPFCLDIYISKASVRACI 260
                 ++  R D+ N        V KR RTPTFNQLT PYHEPFCLDI+ISKASVRAC+
Sbjct: 186 ------SVVPRVDDIN----DGSTVNKRQRTPTFNQLTGPYHEPFCLDIFISKASVRACV 235

Query: 261 VHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEK 320
           VHRVTSKVV VAHSISKD KFDL ST+N T CAAVG ILAQRALADDIHD+VYTPRKGE+
Sbjct: 236 VHRVTSKVVAVAHSISKDFKFDLASTKNKTTCAAVGAILAQRALADDIHDIVYTPRKGER 295

Query: 321 LEGKLQIVLQAIIDNGVNVKVKLKQRKQK 349
           +EGKLQIVLQ+IIDNG+NVKVK+KQR +K
Sbjct: 296 VEGKLQIVLQSIIDNGINVKVKIKQRPKK 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447649|ref|XP_004141580.1| PREDICTED: uncharacterized protein LOC101213193 [Cucumis sativus] gi|449481530|ref|XP_004156210.1| PREDICTED: uncharacterized LOC101213193 [Cucumis sativus]

 Score =  327 bits (838), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 180/341 (52%), Positives = 223/341 (65%), Gaps = 30/341 (8%)

Query: 23  HFVSRVTSYCSRA--SNDFIEENERPTSSRSY---SSRTNLSPLLSSKGPHFGGYNVELV 77
            FV R  S+CS+A        ENER   S S    S R  L+PL     P    Y+VELV
Sbjct: 13  QFVLRACSFCSKAFPGGSIGSENERVAHSNSIANGSCRPQLTPLFPDDKPCSVAYDVELV 72

Query: 78  DDETWQVSAGLAHAWRGLDEDKEAKSDVNVVDDDDDATSFEGDSDFDEIDNMRIRGDLFY 137
           DD+TW VS GLA AW   ++      +   ++D+        DSDFD+IDNMRIRG+LFY
Sbjct: 73  DDDTWAVSCGLARAWEAREKGWSGFENRYSLEDEAHDPVDYCDSDFDDIDNMRIRGNLFY 132

Query: 138 KLDKDSKEFEEYSFDFHRRKSSKTKEGNKDSEKKEASKAKTDKKECQKKEALKRKSDAKE 197
           KLD+ SKEFEE S DFHR+K S  KE  K+   K  SK      +C     +K     K 
Sbjct: 133 KLDQASKEFEECSLDFHRKKKS-LKE--KEDMVKRRSKVNDKLDKCLASGQVKLPEHLK- 188

Query: 198 SKRKESPRPNLASRDDEFNKIVM---SDDNVEKRVRTPTFNQLTAPYHEPFCLDIYISKA 254
                             NK V+    +D+VEK++RTPTFNQLT+PYHEPFCLDI+ISKA
Sbjct: 189 ------------------NKYVIVERENDDVEKKLRTPTFNQLTSPYHEPFCLDIFISKA 230

Query: 255 SVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYT 314
           SVRACI+HRVTSKVV VAHSISKDMKFDL S ++++ACAAVG +LAQRAL DDIH+++YT
Sbjct: 231 SVRACIIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALGDDIHNLIYT 290

Query: 315 PRKGEKLEGKLQIVLQAIIDNGVNVKVKLKQRKQKKASYRP 355
           PRKGE++EGKLQIVLQ++IDNG+NV VK+KQ+K+ +   RP
Sbjct: 291 PRKGERIEGKLQIVLQSVIDNGINVTVKIKQQKRPRKLGRP 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480871|ref|XP_003610721.1| 50S ribosomal protein L18 [Medicago truncatula] gi|355512056|gb|AES93679.1| 50S ribosomal protein L18 [Medicago truncatula]

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/304 (55%), Positives = 213/304 (70%), Gaps = 15/304 (4%)

Query: 53  SSRTNLSPLLSSKGPHFGGYNVELVDDETWQVSAGLAHAWRGLDEDKEAKS---DVNVVD 109
           SS  +LSP  S+      G+++ELVD + W VS+ +A AWRG D      S   D  V+D
Sbjct: 57  SSSLHLSPFFSNSNHPSSGFDIELVDRDAWGVSSVVAQAWRGGDLATAGASSSCDQCVID 116

Query: 110 DDDDATS--FEGDSDFDEIDNMRIRGDLFYKLDKDSKEFEEYSFDFHRRKSSKTKEGNKD 167
           +  DA S   E + DF+EIDN+R+RG+LFYKL++ S EFEEY+ +FH++KSSK K    +
Sbjct: 117 EPLDACSSDLEDELDFEEIDNLRVRGNLFYKLERSSMEFEEYNIEFHKKKSSKKKNDKTE 176

Query: 168 SEKKEASKAKTDKKECQKKEALKRKSDAKESKRKESPRPNLASRDDEFNKIVMSDDNVEK 227
              K  +K KT  K   K + L +  +   + +   PR       DE N        V K
Sbjct: 177 VTNKAKAKDKTTPKATSKDQKLPKVDEFGRNSKSVIPRM------DEIN----DSSPVNK 226

Query: 228 RVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTR 287
           + R PTFNQLT PYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKD+KFDL ST+
Sbjct: 227 KQRVPTFNQLTGPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDLKFDLTSTK 286

Query: 288 NATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVKLKQRK 347
           N T CAAVG ILAQRALADDIHD++YTPRKGE++EGKLQIVL +IID+G+NVK+K+KQR+
Sbjct: 287 NKTTCAAVGKILAQRALADDIHDIIYTPRKGERVEGKLQIVLNSIIDSGINVKLKIKQRQ 346

Query: 348 QKKA 351
           +KK+
Sbjct: 347 KKKS 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229493|ref|NP_188884.1| 50S ribosomal protein L18-like protein [Arabidopsis thaliana] gi|11994277|dbj|BAB01460.1| unnamed protein product [Arabidopsis thaliana] gi|60547769|gb|AAX23848.1| hypothetical protein At3g22450 [Arabidopsis thaliana] gi|71905479|gb|AAZ52717.1| expressed protein [Arabidopsis thaliana] gi|71905481|gb|AAZ52718.1| expressed protein [Arabidopsis thaliana] gi|332643120|gb|AEE76641.1| 50S ribosomal protein L18-like protein [Arabidopsis thaliana]

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 161/301 (53%), Positives = 197/301 (65%), Gaps = 35/301 (11%)

Query: 45  RPTSSRSYSSRTNLSPLLSSKGPHFGGYNVELVDDETWQVSAGLAHAWRGLDEDKEAKSD 104
           RP + R +SSR + S           G  +E VDD+ W VS+ L+ AWR    D    S 
Sbjct: 21  RP-APRCFSSRFSNSESGKVTVTGLSGCGIETVDDDVWHVSSSLSQAWRQFQADTAKNSP 79

Query: 105 VNV------VDDDDDATSFEGDSDFDEIDNMRIRGDLFYKLDKDSKEFEEYSFDFHRRKS 158
           V +      + DD+D        D DEIDNMRIRGDLF+KLD+ SKEFEEY++DFHR+  
Sbjct: 80  VTIQGVRETILDDEDP-------DHDEIDNMRIRGDLFFKLDRGSKEFEEYNYDFHRK-- 130

Query: 159 SKTKEGNKDSEKKEASKAKTDKKECQKKEALKRKSDAKESKRKESPRPNLASRDDEFNKI 218
           ++ K   K+  ++E +K K D K+  + E  KR     +S   E+  PN A         
Sbjct: 131 NQHKNAKKEQNQEEETKIKKDNKKEVRDEYKKRN----DSFTGETDHPNEA--------- 177

Query: 219 VMSDDNVEKRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKD 278
                 V+KR RT TFNQLTAP+H PFCLDIYISK SVRAC++HRVTSKVV VAHSISKD
Sbjct: 178 ------VKKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKD 231

Query: 279 MKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
           MKFDL S RN  ACAAVG +LAQR+L DDIHDV+YTPRKG+K+EGKLQ+VLQA+IDNGVN
Sbjct: 232 MKFDLGSRRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVN 291

Query: 339 V 339
           V
Sbjct: 292 V 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830972|ref|XP_002883368.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata] gi|297329208|gb|EFH59627.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 156/278 (56%), Positives = 187/278 (67%), Gaps = 36/278 (12%)

Query: 69  FGGYNVELVDDETWQVSAGLAHAWRGLDEDKEAKSDVNV-------VDDDDDATSFEGDS 121
             G  +E VDD+ W VS+ L+ AWR    D    S V +       +DD+D         
Sbjct: 44  LSGCGIETVDDDAWHVSSSLSQAWRQFQADTAKNSPVTIQGVRETMLDDED--------P 95

Query: 122 DFDEIDNMRIRGDLFYKLDKDSKEFEEYSFDFHRRKSSKTKEGNKDSEKKEASKAKTDKK 181
           D DEIDNMRIRGDLFYKLD+ SKEFEEY++DFHR+   K  +  ++ E+ E +  K +KK
Sbjct: 96  DHDEIDNMRIRGDLFYKLDRGSKEFEEYNYDFHRKNQHKNVKREQNQEE-ETTMKKNNKK 154

Query: 182 ECQKKEALKRKSDAKESKRKESPRPNLASRDDEFNKIVMSDDNVEKRVRTPTFNQLTAPY 241
           E   +E  K+++D   S   E+  PN A               V KR RT TFNQLTAP+
Sbjct: 155 EV--REEYKKRND---SFTGETDHPNAA---------------VRKRERTFTFNQLTAPF 194

Query: 242 HEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQ 301
           H PFCLDIYISK SVRAC++HRVTSKVV VAHSISKDMKFDL STRNA ACAAVG +LAQ
Sbjct: 195 HYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSTRNAAACAAVGAVLAQ 254

Query: 302 RALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339
           R L DDIHDV+YTPRKG+K+EGKLQ+VLQA+IDNGV V
Sbjct: 255 RCLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVYV 292

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326527543|dbj|BAK08046.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/285 (47%), Positives = 172/285 (60%), Gaps = 47/285 (16%)

Query: 70  GGYNVELVDDETWQVSAGLAHAWRGLDEDKEAKSDVNVVDDDDDATSFEG-----DSDFD 124
            G+++++VDD+ W  S                 SD    D+  D+    G     DSD D
Sbjct: 66  AGFHIDIVDDDLWPASFDFP-------------SDPMTGDECLDSFQENGEEQLHDSD-D 111

Query: 125 EIDNMRIRGDLFYKLDKDSKEFEEYSFDFHRRKSSKTKEGNKDSEKKEASKAKTDKKECQ 184
           EID+MR R  LFYKLD+ SKEFEEY+    RR       G   S+             C+
Sbjct: 112 EIDDMRHRKQLFYKLDRGSKEFEEYNLPLRRRWKKDKPNGKNPSD-------------CE 158

Query: 185 KKEALKRKSDAKESKRKESPRPNLASRDDEFNKIVMSDDNVE-KRVRTPTFNQLTAPYHE 243
           K E  ++ +  K  K K  P              V +DD VE KR R PTFNQ+T PYH 
Sbjct: 159 KVEP-EKPARLKAPKLKAEP-------------AVHTDDIVEVKRDRVPTFNQMTDPYHH 204

Query: 244 PFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRA 303
           PFCLDI++SK SVRAC VHRVTS+VV VAHSISKDMKFDL S +   AC AVG +LA+RA
Sbjct: 205 PFCLDIHVSKGSVRACFVHRVTSRVVSVAHSISKDMKFDLGSRKGIKACVAVGALLAKRA 264

Query: 304 LADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVKLKQRKQ 348
           + DDIH+ +YTPRKG+K+EGK+++VL+ II+NGV+VKVKLKQR++
Sbjct: 265 IEDDIHNAIYTPRKGDKIEGKIEVVLRGIIENGVDVKVKLKQRRK 309

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242082265|ref|XP_002445901.1| hypothetical protein SORBIDRAFT_07g027720 [Sorghum bicolor] gi|241942251|gb|EES15396.1| hypothetical protein SORBIDRAFT_07g027720 [Sorghum bicolor]

 Score =  233 bits (595), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 137/285 (48%), Positives = 183/285 (64%), Gaps = 41/285 (14%)

Query: 71  GYNVELVDDETWQVSAGLA-HAWRGLDEDKEAKSDVNVVDDDDDATSFEGDSDFDEIDNM 129
           G+++++VD + W  S G +  A RG     E   D++  +DD +   F      DEID+M
Sbjct: 69  GFHIDVVDSDLWTPSFGFSSEAERG----NEYLDDLHR-NDDSEVRDFS-----DEIDDM 118

Query: 130 RIRGDLFYKLDKDSKEFEEYSFDFHRRKSSKTKEGNKDSEKKEASKAKTDKKECQKKEAL 189
           R R  LFYKLD+ SKE+EE S    RRK+            ++ + AK + KEC+ + A 
Sbjct: 119 RHRKKLFYKLDRQSKEYEENSLPLRRRKN------------RDKTNAK-NPKECKVEPAK 165

Query: 190 KRKSDAKESKRKESPRPNLASRDDEFNKIVMSDDNVEKRVRTPTFNQLTAPYHEPFCLDI 249
              S+A ++ +        A RDD+  ++        KR R PTFNQ+T PYH PFCLDI
Sbjct: 166 SVSSNAPKATK-------CAIRDDDMVEV--------KRERMPTFNQMTDPYHHPFCLDI 210

Query: 250 YISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDS--TRNATACAAVGGILAQRALADD 307
           +++K SVRAC VHRVTS+VV VAHSISKDMKFDL S   +   ACAAVG +LA+RAL DD
Sbjct: 211 HVTKGSVRACFVHRVTSRVVAVAHSISKDMKFDLGSKKGKGMKACAAVGALLAKRALEDD 270

Query: 308 IHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVKLKQRKQKKAS 352
           IH+ +YTPRKG+++EGK+++VL AII+NGV+VKVKLKQRK  K S
Sbjct: 271 IHNALYTPRKGDRIEGKIKVVLHAIIENGVDVKVKLKQRKLIKTS 315

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552181|ref|XP_002517135.1| structural constituent of ribosome, putative [Ricinus communis] gi|223543770|gb|EEF45298.1| structural constituent of ribosome, putative [Ricinus communis]

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/127 (83%), Positives = 118/127 (92%)

Query: 226 EKRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDS 285
           +K+VRTPTFNQLT PYHEPFCLDIYISKASVRAC++HRVTSKVV VAHSISKD+KFDL S
Sbjct: 9   KKKVRTPTFNQLTGPYHEPFCLDIYISKASVRACVIHRVTSKVVAVAHSISKDLKFDLSS 68

Query: 286 TRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNVKVKLKQ 345
           TRN  ACA VG +LAQRALADDIHDV+YT RKGEKLEGKLQIVLQ+I+DNG+NVKVKLKQ
Sbjct: 69  TRNVAACATVGAVLAQRALADDIHDVIYTQRKGEKLEGKLQIVLQSIVDNGINVKVKLKQ 128

Query: 346 RKQKKAS 352
           R++ KAS
Sbjct: 129 RQRGKAS 135

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
TAIR|locus:2077016	311	AT3G22450 [Arabidopsis thalian	0.434	0.498	0.643	3.7e-72
TAIR|locus:1005716736	234	AT1G08845 [Arabidopsis thalian	0.316	0.482	0.444	3.9e-21
TAIR|locus:2087535	187	AT3G20230 [Arabidopsis thalian	0.310	0.593	0.369	5.8e-18
TAIR|locus:2180310	114	AT5G27820 [Arabidopsis thalian	0.271	0.850	0.298	1.8e-08
TIGR_CMR|GSU_2841	122	GSU_2841 "ribosomal protein L1	0.252	0.737	0.274	1.8e-07
TIGR_CMR|CBU_0254	117	CBU_0254 "ribosomal protein L1	0.319	0.974	0.252	2.1e-05
UNIPROTKB|Q9H0U6	180	MRPL18 "39S ribosomal protein	0.226	0.45	0.365	3.7e-05
UNIPROTKB|J9P2G0	194	MRPL18 "Uncharacterized protei	0.226	0.417	0.365	4.6e-05
MGI|MGI:1914931	180	Mrpl18 "mitochondrial ribosoma	0.375	0.744	0.290	5.3e-05
UNIPROTKB|F1SB64	180	MRPL18 "Uncharacterized protei	0.226	0.45	0.353	0.00013

TAIR|locus:2077016 AT3G22450 [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
 Identities = 103/160 (64%), Positives = 123/160 (76%)

Query:   184 QKKEALKRKSDAKESK----RKESPRPNLASRDDEFN-KIVMSDDNVEKRVRTPTFNQLT 238
             Q K A K ++  +E+K     K+  R     R+D F  +    ++ V+KR RT TFNQLT
Sbjct:   132 QHKNAKKEQNQEEETKIKKDNKKEVRDEYKKRNDSFTGETDHPNEAVKKRERTFTFNQLT 191

Query:   239 APYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGI 298
             AP+H PFCLDIYISK SVRAC++HRVTSKVV VAHSISKDMKFDL S RN  ACAAVG +
Sbjct:   192 APFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSRRNVAACAAVGAV 251

Query:   299 LAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
             LAQR+L DDIHDV+YTPRKG+K+EGKLQ+VLQA+IDNGVN
Sbjct:   252 LAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVN 291

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:1005716736 AT1G08845 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 52/117 (44%), Positives = 76/117 (64%)

Query:   226 EKRVRTP----TFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKF 281
             EK+ + P    +F Q T  Y EPF LD++ISK  V A + HRVT + V VA + SKD+K 
Sbjct:   112 EKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKA 171

Query:   282 DLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
              L S  +  AC ++G IL++RA   D++   YTPR  +K EGK++ V+Q++IDNG++
Sbjct:   172 VLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGID 228

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:2087535 AT3G20230 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 41/111 (36%), Positives = 73/111 (65%)

Query:   227 KRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDST 286
             KR    ++ Q T  Y  PF L+++ S+  + A ++HR TSKV+ VA + ++D++ ++ S 
Sbjct:    73 KRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSL 132

Query:   287 RNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
              +  AC  +G ++A+R++  D++ V Y PRKGE++EGKL IV+  I ++G+
Sbjct:   133 VDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2180310 AT5G27820 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 29/97 (29%), Positives = 53/97 (54%)

Query:   241 YHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILA 300
             Y +P+ L ++ +   V A ++H  T+ V   A S  K ++  +D TR+  A + +G IL 
Sbjct:    15 YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query:   301 QRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
             +R L  DI  V    +K ++  GK++ V+ ++ + GV
Sbjct:    75 ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TIGR_CMR|GSU_2841 GSU_2841 "ribosomal protein L18" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 100 (40.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 25/91 (27%), Positives = 47/91 (51%)

Query:   247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
             L+++ S   + A I+   T   +V A ++ K+    L+   N  A   VG ++A+RAL  
Sbjct:    31 LNVFKSAQHIYAQIIDDTTGTTLVSASTVQKEASESLNHCGNVEAAKRVGALIAKRALEK 90

Query:   307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
             +I  VV+  R G    G+++ +  +  +NG+
Sbjct:    91 NIATVVFD-RNGFLYHGRIKALADSARENGL 120

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|CBU_0254 CBU_0254 "ribosomal protein L18" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 106 (42.4 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 29/115 (25%), Positives = 56/115 (48%)

Query:   223 DNVEKRVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFD 282
             D  EKR+R     +          L ++ S   + A ++    SKV+V A ++ K+++  
Sbjct:     2 DKQEKRIRRARRTRAKIKELGAVRLCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQ 61

Query:   283 LDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
             +    N  A  A+G ++AQRA    +  V +  R G K  G+++ + +A+ + G+
Sbjct:    62 IKHGGNIQAATAIGKLIAQRAKKAGVTKVAFD-RSGYKYHGRVRALAEAVREGGI 115

GO:0003735 "structural constituent of ribosome" evidence=ISS

UNIPROTKB|Q9H0U6 MRPL18 "39S ribosomal protein L18, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 30/82 (36%), Positives = 44/82 (53%)

Query:   256 VRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTP 315
             V A + H+   KVVV A +    +K  L STRN  AC ++G +LAQR L   I+ +VY P
Sbjct:    90 VEALVEHQ-NGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQP 148

Query:   316 RKGEKLEGKLQIVLQAIIDNGV 337
                E     ++ +  A+ + GV
Sbjct:   149 TPWEAASDSMKRLQSAMTEGGV 170

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005761 "mitochondrial ribosome" evidence=NAS

GO:0006412 "translation" evidence=NAS

GO:0008097 "5S rRNA binding" evidence=IDA

GO:0035928 "rRNA import into mitochondrion" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|J9P2G0 MRPL18 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 117 (46.2 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 30/82 (36%), Positives = 44/82 (53%)

Query:   256 VRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTP 315
             V A + HR   KVVV A +    +K  L STRN  AC ++G +LA+R L   I+ +VY P
Sbjct:   104 VEALVEHR-NGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAERCLEAGINFMVYQP 162

Query:   316 RKGEKLEGKLQIVLQAIIDNGV 337
                E     ++ +  A+ + GV
Sbjct:   163 TPWEAASDSMKRLQNAMTEGGV 184

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:1914931 Mrpl18 "mitochondrial ribosomal protein L18" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 41/141 (29%), Positives = 68/141 (48%)

Query:   197 ESKRKESPRPNLASRDDEFNKIVMSDDNVEKRVRTPTFNQLTAPYHEPFCLDIYISKASV 256
             ESK  E+  P   +R+   N  ++     E+   T   N+    +H    L +  ++  V
Sbjct:    37 ESKENEAVAPEFTNRNPR-NLELLGVARKERGWATVWPNREF--WHR---LRVVKTQHHV 90

Query:   257 RACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPR 316
              A + H +  +VVV A +    +K  L STRN  AC ++G +LAQR L   I+ +VY P 
Sbjct:    91 EAFVEH-LNGQVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPT 149

Query:   317 KGEKLEGKLQIVLQAIIDNGV 337
               E     ++ +  A+ ++GV
Sbjct:   150 PWEASSDSIKRLQNAMTESGV 170

GO:0003723 "RNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008097 "5S rRNA binding" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0035928 "rRNA import into mitochondrion" evidence=ISO

UNIPROTKB|F1SB64 MRPL18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 112 (44.5 bits), Expect = 0.00013, P = 0.00013
 Identities = 29/82 (35%), Positives = 44/82 (53%)

Query:   256 VRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTP 315
             + A + HR   +VVV A +    +K  L STRN  AC +VG +LA+R L   I+ +VY P
Sbjct:    90 IEALVEHR-NGQVVVSASTREWAIKKHLYSTRNVVACESVGRVLAERCLEAGINFMVYHP 148

Query:   316 RKGEKLEGKLQIVLQAIIDNGV 337
                E     ++ +  A+ + GV
Sbjct:   149 TPWEAASDSIKRLQHAMTEGGV 170

GO:0035928 "rRNA import into mitochondrion" evidence=IEA

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.671.1 hypothetical protein (269 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	357
cd00432	103	cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18	4e-17
COG0256	125	COG0256, RplR, Ribosomal protein L18 [Translation,	6e-04
pfam00861	119	pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e fami	8e-04
CHL00139	109	CHL00139, rpl18, ribosomal protein L18; Validated	0.002
TIGR00060	114	TIGR00060, L18_bact, ribosomal protein L18, bacter	0.003

>gnl|CDD|238246 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit

 Score = 75.7 bits (187), Expect = 4e-17
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 241 YHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILA 300
             E   L +  S   + A I+     K +V A ++   +K  L S  N  A   VG +LA
Sbjct: 8   TQERPRLVVRKSNKHIYAQIIDDSGDKTLVSASTLELAIKGVLGSGNNVEAAYLVGRLLA 67

Query: 301 QRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
           +RAL   I  VV+  R G +  G+++ + +   + G+
Sbjct: 68  KRALEKGIKKVVF-DRGGYRYHGRVKALAKGAREGGL 103

L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified. Length = 103

>gnl|CDD|223334 COG0256, RplR, Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFD--LDSTRNATACAAVGGILAQRAL 304
           L +  S   + A I+  V    +  A ++SK+++         N  A   VG ++A+RAL
Sbjct: 32  LVVRRSNRHIYAQIIDDVKGGTLASASTLSKELRKYGKKGGGGNTEAAYLVGKLIAERAL 91

Query: 305 ADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339
           A  I +VV+  R G K  G++  +     + G+  
Sbjct: 92  AKGIEEVVFD-RGGYKYHGRVAALADGAREAGLEF 125

Length = 125

>gnl|CDD|216159 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e family

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMK--FDLDSTRNATACAAVGGILAQRAL 304
           L +  S   + A I+       +V A ++SK++K         N  A   VG +LA+RAL
Sbjct: 26  LVVRRSNKHIYAQIIDDTKGGTLVSASTLSKELKKYGLKGGGNNTAAAYLVGLLLAKRAL 85

Query: 305 ADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVNV 339
              I  VV+  R G    G++  + +   + G+N 
Sbjct: 86  KKGIAVVVFD-RGGYTYHGRVFALAKGAREAGLNF 119

This family includes ribosomal proteins from the large subunit. This family includes L18 from bacteria and L5 from eukaryotes. It has been shown that the amino terminal 93 amino acids of rat Rpl5 are necessary and sufficient to bind 5S rRNA in vitro. Suggesting that the entire family has a function in rRNA binding. Length = 119

>gnl|CDD|214373 CHL00139, rpl18, ribosomal protein L18; Validated

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 20/67 (29%), Positives = 32/67 (47%)

Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
           L ++ S   + A I+     K +V   ++  D+K  L ST    A   VG  LA+++L  
Sbjct: 18  LSVFRSNKHIYAQIIDDTNGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLAKKSLKK 77

Query: 307 DIHDVVY 313
            I  VV+
Sbjct: 78  GITKVVF 84

Length = 109

>gnl|CDD|213499 TIGR00060, L18_bact, ribosomal protein L18, bacterial type

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 266 SKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL 325
           SK  V+A + + + K  L  T N  A   VG ++A+R     I DVV+  R G K  G++
Sbjct: 44  SKSEVLASASTLEKK--LKYTGNKDAAKKVGKLVAERLKEKGIKDVVFD-RGGYKYHGRV 100

Query: 326 QIVLQAIIDNGVN 338
             + +A  + G+N
Sbjct: 101 AALAEAAREAGLN 113

The archaeal and eukaryotic type rpL18 is not detectable under this model [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
CHL00139	109	rpl18 ribosomal protein L18; Validated	100.0
PTZ00032	211	60S ribosomal protein L18; Provisional	100.0
TIGR00060	114	L18_bact ribosomal protein L18, bacterial type. Th	100.0
PRK05593	117	rplR 50S ribosomal protein L18; Reviewed	100.0
cd00432	103	Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is	99.97
PF00861	119	Ribosomal_L18p: Ribosomal L18p/L5e family; InterPr	99.97
COG0256	125	RplR Ribosomal protein L18 [Translation, ribosomal	99.97
PRK08569	193	rpl18p 50S ribosomal protein L18P; Reviewed	99.95
KOG3333	188	consensus Mitochondrial/chloroplast ribosomal prot	99.77
PTZ00069	300	60S ribosomal protein L5; Provisional	98.28
PF00411	110	Ribosomal_S11: Ribosomal protein S11; InterPro: IP	96.74
PTZ00090	233	40S ribosomal protein S11; Provisional	96.67
TIGR03632	108	bact_S11 30S ribosomal protein S11. This model des	96.31
CHL00041	116	rps11 ribosomal protein S11	96.2
PRK05309	128	30S ribosomal protein S11; Validated	95.71
TIGR03628	114	arch_S11P archaeal ribosomal protein S11P. This mo	92.18
PRK09607	132	rps11p 30S ribosomal protein S11P; Reviewed	91.83
PTZ00129	149	40S ribosomal protein S14; Provisional	90.04
COG0100	129	RpsK Ribosomal protein S11 [Translation, ribosomal	86.14

>CHL00139 rpl18 ribosomal protein L18; Validated

Probab=100.00  E-value=1.2e-35  Score=248.53  Aligned_cols=101  Identities=26%  Similarity=0.446  Sum_probs=97.2

Q ss_pred             ccCCCCCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Q 018389          237 LTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPR  316 (357)
Q Consensus       237 rTd~Y~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR  316 (357)
                      .++...+| ||+||+||+|||||||||.+|+||+||||.|++++..+.+++|++||..||++||+||+++||++|+|| |
T Consensus         9 i~g~~~rp-RL~V~rSnkhiyaQvidd~~g~tlasaST~ek~~~~~~~~~~n~~aA~~vG~lla~ra~~~gi~~vvfD-r   86 (109)
T CHL00139          9 IKGTAERP-RLSVFRSNKHIYAQIIDDTNGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLAKKSLKKGITKVVFD-R   86 (109)
T ss_pred             ecCCCCCC-EEEEEEeCCeEEEEEEECCCCCEEEEEecCchhhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEc-C
Confidence            44677888 899999999999999999999999999999999999899999999999999999999999999999999 9


Q ss_pred             CCcchhhHHHHHHHHHHHcCcEE
Q 018389          317 KGEKLEGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       317 ~GykYHGRVKAfADAaRE~GL~F  339 (357)
                      +||+|||||+||||+|||+||+|
T Consensus        87 gg~~yhGrV~a~a~~are~GL~f  109 (109)
T CHL00139         87 GGKLYHGRIKALAEAAREAGLQF  109 (109)
T ss_pred             CCCccchHHHHHHHHHHHhCCCC
Confidence            99999999999999999999987

>PTZ00032 60S ribosomal protein L18; Provisional

Probab=100.00  E-value=2e-34  Score=264.05  Aligned_cols=96  Identities=19%  Similarity=0.242  Sum_probs=91.2

Q ss_pred             CCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccC------------CCCCHHHHHHHHHHHHHHHHhCCCCE
Q 018389          243 EPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLD------------STRNATACAAVGGILAQRALADDIHD  310 (357)
Q Consensus       243 rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~------------St~NveAAa~VGkvLAeRakekGI~~  310 (357)
                      |.+||+||+||+|||||||||.+|+|||+|||++++++..+.            .++|++||+.||++||+||+++||++
T Consensus       104 rrPRLsV~RSnkHIYAQIIDD~~~~TLasaSTlek~l~~~~~~~~~~~~n~~~~~g~nieaA~~VGk~IAerAl~kGI~k  183 (211)
T PTZ00032        104 RRPRLTLKNTNNQMYATIVDDYTRHVLCFSCTNFKYLSHIFGTYPTKTTNRVRNNGGTIKAAYELGKLIGRKALSKGISK  183 (211)
T ss_pred             CcceEEEEecCCeEEEEEEECCCCCEEEEecCCCHHHHhhhcccccccccccccCCCcHHHHHHHHHHHHHHHHHCCCCE
Confidence            334999999999999999999999999999999999988665            57899999999999999999999999


Q ss_pred             EEEcCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389          311 VVYTPRKGEKLEGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       311 VVFDpR~GykYHGRVKAfADAaRE~GL~F  339 (357)
                      |+|| |+||+|||||+||||+|||+||+|
T Consensus       184 VvFD-RgGy~YHGRVkALAdaARe~GLkF  211 (211)
T PTZ00032        184 VRFD-RAHYKYAGKVEALAEGARAVGLQF  211 (211)
T ss_pred             EEEe-CCCCeehhHHHHHHHHHHHcCCCC
Confidence            9999 999999999999999999999987

>TIGR00060 L18_bact ribosomal protein L18, bacterial type

Probab=100.00  E-value=1.4e-34  Score=244.43  Aligned_cols=96  Identities=29%  Similarity=0.454  Sum_probs=92.4

Q ss_pred             cCCCCCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018389          238 TAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRK  317 (357)
Q Consensus       238 Td~Y~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~  317 (357)
                      |..|.+| ||+||+||+|||||||||.+++||+||||+|++++    .++|++||..||++||+||+++||++|+|| |+
T Consensus        19 t~~~~rp-RL~V~rSnk~iyaQiIdd~~~~tlasaST~ek~~~----~~~n~~aA~~vG~~la~ra~~~gi~~vvfD-rg   92 (114)
T TIGR00060        19 TGEANRP-RLVVFRSNRHIYAQVIDDSKSEVLASASTLEKKLK----YTGNKDAAKKVGKLVAERLKEKGIKDVVFD-RG   92 (114)
T ss_pred             CCCCCCc-EEEEEEeCCeEEEEEEECCCCEEEEEEecchhhhc----CCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-CC
Confidence            6667899 99999999999999999999999999999999987    678999999999999999999999999999 99


Q ss_pred             CcchhhHHHHHHHHHHHcCcEE
Q 018389          318 GEKLEGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       318 GykYHGRVKAfADAaRE~GL~F  339 (357)
                      ||+|||||+||||+|||+||+|
T Consensus        93 g~~YhGrv~A~a~~aRe~Gl~F  114 (114)
T TIGR00060        93 GYKYHGRVAALAEAAREAGLNF  114 (114)
T ss_pred             CCcchHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999987

The archaeal and eukaryotic type rpL18 is not detectable under this model.

>PRK05593 rplR 50S ribosomal protein L18; Reviewed

Probab=100.00  E-value=1.1e-33  Score=239.04  Aligned_cols=98  Identities=28%  Similarity=0.465  Sum_probs=93.2

Q ss_pred             CCCCCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018389          239 APYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKG  318 (357)
Q Consensus       239 d~Y~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~G  318 (357)
                      +.-.+| ||+||+||+|||||||||.+|+||+||||+|++++..+. ++|++||..||++||+||+++||++|+|| |+|
T Consensus        20 g~~~rp-RL~V~~SnkhiyAQvidd~~~~tl~saST~e~~~k~~~~-~~n~~aa~~vG~~la~ra~~~gi~~vvfD-rg~   96 (117)
T PRK05593         20 GTAERP-RLSVFRSNRHIYAQVIDDVKGKTLASASTLEKDVRAGLK-GGNKEAAKKVGKLIAERAKAKGIKQVVFD-RGG   96 (117)
T ss_pred             CCCCCC-EEEEEEeCCeEEEEEEECCCCEEEEEEecCcHhHhcccc-CCCHHHHHHHHHHHHHHHHHCCCCEEEEc-CCC
Confidence            445777 899999999999999999999999999999999987765 89999999999999999999999999999 999


Q ss_pred             cchhhHHHHHHHHHHHcCcEE
Q 018389          319 EKLEGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       319 ykYHGRVKAfADAaRE~GL~F  339 (357)
                      |+|||||+||||+|||+||+|
T Consensus        97 ~~yhGrV~a~a~~are~Gl~f  117 (117)
T PRK05593         97 YKYHGRVKALADAAREAGLKF  117 (117)
T ss_pred             CcccHHHHHHHHHHHHhCCCC
Confidence            999999999999999999987

>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit

Probab=99.97  E-value=1.7e-31  Score=217.33  Aligned_cols=96  Identities=28%  Similarity=0.367  Sum_probs=92.8

Q ss_pred             CCCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcc
Q 018389          241 YHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEK  320 (357)
Q Consensus       241 Y~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~Gyk  320 (357)
                      +..++||+|++||+|||||||||.+++||++|||.|++++..+++++|++||..||++||+||+++||..|+|| |+|++
T Consensus         8 ~~~~~RL~v~~Sn~~i~aqvi~~~~~~vl~sast~e~~~~~~~~~~~n~~aA~~vG~~la~r~~~~gi~~vv~D-~~~~~   86 (103)
T cd00432           8 TQERPRLVVRKSNKHIYAQIIDDSGDKTLVSASTLELAIKGVLGSGNNVEAAYLVGRLLAKRALEKGIKKVVFD-RGGYR   86 (103)
T ss_pred             cCCCCEEEEEEeCCEEEEEEEEeCcCeEEEEEecCchhhcccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEe-CCCcc
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hhhHHHHHHHHHHHcCc
Q 018389          321 LEGKLQIVLQAIIDNGV  337 (357)
Q Consensus       321 YHGRVKAfADAaRE~GL  337 (357)
                      |||||+||++++||+||
T Consensus        87 ~~grv~a~~~~~r~~Gl  103 (103)
T cd00432          87 YHGRVKALAKGAREGGL  103 (103)
T ss_pred             cccHHHHHHHHHHHcCC
Confidence            99999999999999997

L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.

>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=5.1e-31  Score=221.44  Aligned_cols=95  Identities=28%  Similarity=0.396  Sum_probs=90.2

Q ss_pred             CeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhccc--CCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcch
Q 018389          244 PFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDL--DSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKL  321 (357)
Q Consensus       244 PfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L--~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykY  321 (357)
                      ++||+||+||+|||||||||.++.||++|||.+++|++.+  .+++|++||..||++||+||+++||..|+|| |+|++|
T Consensus        23 ~~RL~V~~Snk~i~aQii~~~~~~~l~~aSt~~~~l~~~~~~~~~~n~~aa~~vG~lla~ra~~~gi~~v~fd-r~~~~y  101 (119)
T PF00861_consen   23 RPRLVVFRSNKHIYAQIIDDSKGGTLASASTLSKELKKYGWKGSTKNVEAAYLVGELLAKRALEKGIAKVVFD-RGGYKY  101 (119)
T ss_dssp             SEEEEEEEESSEEEEEEEECTTTEEEEEEEEETTTGGGTT-SSTTSSHHHHHHHHHHHHHHHHHTTSSEEEEC-TSTSSS
T ss_pred             CCEEEEEeccCeEEEEEEeeCCCCeEEEEEecchhhhhhhhccCCCCEehHHHHHHHHHHHHHHcCCcEEEEc-CCCCcc
Confidence            3599999999999999999999999999999999999864  5678999999999999999999999999999 999999


Q ss_pred             hhHHHHHHHHHHHcCcEE
Q 018389          322 EGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       322 HGRVKAfADAaRE~GL~F  339 (357)
                      ||||+|||++|||+||+|
T Consensus       102 ~grv~a~~~~~re~Gl~f  119 (119)
T PF00861_consen  102 HGRVKALADGAREGGLEF  119 (119)
T ss_dssp             SSHHHHHHHHHHHTTCB-
T ss_pred             cHHHHHHHHHHHHcCCCC
Confidence            999999999999999987

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....

>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=4.3e-31  Score=226.70  Aligned_cols=99  Identities=26%  Similarity=0.389  Sum_probs=92.2

Q ss_pred             CCCCCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcc--cCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Q 018389          239 APYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFD--LDSTRNATACAAVGGILAQRALADDIHDVVYTPR  316 (357)
Q Consensus       239 d~Y~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~--L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR  316 (357)
                      ..-.+| ||+||+||+|||||||||..+.||++|||.+++|++.  +..++|++||..||.++|+||+++||++|||| |
T Consensus        25 g~~~rp-RL~V~rSnkhi~aQiId~~~~~tla~aSt~~~~l~~~g~~~~~~N~~aA~~vG~lia~ra~~kgi~~vVfd-r  102 (125)
T COG0256          25 GTSGRP-RLVVRRSNRHIYAQIIDDVKGGTLASASTLSKELRKYGKKGGGGNTEAAYLVGKLIAERALAKGIEEVVFD-R  102 (125)
T ss_pred             cCCCCc-EEEEEEeCCcEEEEEEEcCCCceEEEEEcchHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEc-C
Confidence            445677 9999999999999999999999999999999999863  33467999999999999999999999999999 9


Q ss_pred             CCcchhhHHHHHHHHHHHcCcEE
Q 018389          317 KGEKLEGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       317 ~GykYHGRVKAfADAaRE~GL~F  339 (357)
                      +||+|||||+||||++||+||+|
T Consensus       103 ~g~~yhgRV~Ala~~AreaGL~f  125 (125)
T COG0256         103 GGYKYHGRVAALADGAREAGLEF  125 (125)
T ss_pred             CCCCcchHHHHHHHHHHHcCcCC
Confidence            99999999999999999999987

>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed

Probab=99.95  E-value=1.5e-27  Score=217.19  Aligned_cols=98  Identities=20%  Similarity=0.187  Sum_probs=92.8

Q ss_pred             CCCeEEEEEecCCeEEEEEE--eCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCc
Q 018389          242 HEPFCLDIYISKASVRACIV--HRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGE  319 (357)
Q Consensus       242 ~rPfRL~VfrSNKHIYAQVI--DD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~Gy  319 (357)
                      .+| ||+|++||+|||||||  |+.+++|||||||.|+.+...+.+++|++||..||.+||+||+++||++|+|| |+|+
T Consensus        31 ~kp-RLvV~rSNkhIyaQiI~~dd~gd~tLaSAsS~el~~~g~~~~~~N~~AAy~vG~llA~ral~kGi~~vvfD-rGg~  108 (193)
T PRK08569         31 GKP-RLVVRKTNKHVIAQIVKYDPKGDRTLASAHSRELAKYGWKGDTGNTPAAYLTGLLAGKKALKAGVEEAVLD-IGLH  108 (193)
T ss_pred             CCC-EEEEEEeCCeEEEEEEEccCCCCEEEEEEecCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cCCc
Confidence            345 9999999999999999  89999999999999999977677789999999999999999999999999999 8999


Q ss_pred             chh--hHHHHHHHHHHHcCcEEEE
Q 018389          320 KLE--GKLQIVLQAIIDNGVNVKV  341 (357)
Q Consensus       320 kYH--GRVKAfADAaRE~GL~FK~  341 (357)
                      +||  |||+|||++||++||+|-.
T Consensus       109 ~yh~gGRV~A~akgArd~GL~fPh  132 (193)
T PRK08569        109 RPTKGSRVFAALKGAIDAGLEIPH  132 (193)
T ss_pred             cccCCccHHHHHHHHHHcCCcCCC
Confidence            999  9999999999999999854

>KOG3333 consensus Mitochondrial/chloroplast ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=1.1e-18  Score=156.42  Aligned_cols=94  Identities=30%  Similarity=0.432  Sum_probs=85.9

Q ss_pred             EEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHH
Q 018389          246 CLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL  325 (357)
Q Consensus       246 RL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRV  325 (357)
                      +|.|.++..|+.+-|.|..+|. |+||||.||.|+++||++.|+.||.+||++||+||++.||+++++.|-....-....
T Consensus        62 ~lev~~~~~hveg~v~H~~~gv-vvSAST~EwaIk~qLYst~dtsA~~niGRVLAqRCLqsGI~fm~~~~t~ea~~~s~~  140 (188)
T KOG3333|consen   62 RLEVIRTQHHVEGLVEHQNGGV-VVSASTREWAIKKQLYSTRDTSACENIGRVLAQRCLQSGINFMVYQPTPEAAASSSM  140 (188)
T ss_pred             EEEEeecccceeeeeeEecCCE-EEEecccchHHHHHHhhccchHHHHHHHHHHHHHHHHhCcceeccCCChhhccchHH
Confidence            6999999999999999988776 559999999999999999999999999999999999999999999975555555788


Q ss_pred             HHHHHHHHHcCcEEE
Q 018389          326 QIVLQAIIDNGVNVK  340 (357)
Q Consensus       326 KAfADAaRE~GL~FK  340 (357)
                      +-|..++.|+|+.||
T Consensus       141 q~l~~a~~e~Gv~lk  155 (188)
T KOG3333|consen  141 QRLQSAMTEGGVVLK  155 (188)
T ss_pred             HHHHHHHHhCCeeec
Confidence            889999999999876

>PTZ00069 60S ribosomal protein L5; Provisional

Probab=98.28  E-value=2.3e-06  Score=83.42  Aligned_cols=95  Identities=20%  Similarity=0.170  Sum_probs=72.4

Q ss_pred             eEEEEEecCCeEEEEEEeCC--CCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhC--------CCC-----
Q 018389          245 FCLDIYISKASVRACIVHRV--TSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD--------DIH-----  309 (357)
Q Consensus       245 fRL~VfrSNKHIYAQVIDD~--~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakek--------GI~-----  309 (357)
                      |||.|-+||++|.|||+...  .-+|||+|.+.|..=-.-..+.+|..||...|-+||.|++.+        |++     
T Consensus        49 ~RlVVR~TN~~ii~Qiv~~~~~GD~vl~sA~S~eL~kyG~k~gl~N~~AAY~TGlL~arR~L~kl~ld~~y~G~~e~~g~  128 (300)
T PTZ00069         49 YRLVVRITNKDIICQIVYATIVGDKVLAAAYSHELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFEGVKEADGE  128 (300)
T ss_pred             ceEEEEEECCcEEEEEEEeecCCCEEEEEeehhhHhhcCcCCCCccHHHHHHHHHHHHHHHHHhhcccccccCcccccCc
Confidence            69999999999999999763  567888888877542112234689999999999999999999        874     


Q ss_pred             ---------------EEEEcCCCCc--chhhHHHHHHHHHHHcCcEEE
Q 018389          310 ---------------DVVYTPRKGE--KLEGKLQIVLQAIIDNGVNVK  340 (357)
Q Consensus       310 ---------------~VVFDpR~Gy--kYHGRVKAfADAaRE~GL~FK  340 (357)
                                     .++.|. |-.  ..-+||=|.+.++-++||.+=
T Consensus       129 ~y~v~e~~~~~~rpf~a~LDi-GL~rtt~G~RVFaalKGa~DgGl~IP  175 (300)
T PTZ00069        129 YYHVDEEDDEERRPFKAILDV-GLARTTTGNRVFGALKGAVDGGLHIP  175 (300)
T ss_pred             ccccccccccCCCCceEEEee-ccccCCCCceeeeehhcccccCcccC
Confidence                           445553 111  111689999999999999763

>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.74  E-value=0.024  Score=47.68  Aligned_cols=87  Identities=17%  Similarity=0.155  Sum_probs=68.7

Q ss_pred             EEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHH
Q 018389          247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQ  326 (357)
Q Consensus       247 L~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVK  326 (357)
                      +.|+.|.+.+...|.| .+|.++.++|+-.-.+|..-  .....||..+++.++++|++.||..|.--.+ | .--||-.
T Consensus         3 ihI~~s~NNt~vtlTd-~~G~~~~~~S~G~~gfK~~r--k~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ik-G-~g~gr~~   77 (110)
T PF00411_consen    3 IHIKSSFNNTIVTLTD-LKGNVLFWSSAGSLGFKGAR--KSTPYAAQQAAEKIAKKAKELGIKTVRVKIK-G-FGPGREA   77 (110)
T ss_dssp             EEEEEESSEEEEEEEE-TTSEEEEEEETTTSSTTTTC--GSSHHHHHHHHHHHHHHHHCTTEEEEEEEEE-S-SSTTHHH
T ss_pred             EEEEecCCCEEEEEEC-CCCCEEEEEecccccccccc--ccCHHHHHHHHHHHHHHHHHcCCeEEEEEEc-C-CCccHHH
Confidence            6788899999999987 77999999999888887743  5577999999999999999999998753322 3 2236764


Q ss_pred             HHHHHHHHcCcEE
Q 018389          327 IVLQAIIDNGVNV  339 (357)
Q Consensus       327 AfADAaRE~GL~F  339 (357)
                      + ..+|...||++
T Consensus        78 ~-lk~l~~~gl~I   89 (110)
T PF00411_consen   78 A-LKALKKSGLKI   89 (110)
T ss_dssp             H-HHHHHHTTSEE
T ss_pred             H-HHHHHhcCCEE
Confidence            4 47788899864

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....

>PTZ00090 40S ribosomal protein S11; Provisional

Probab=96.67  E-value=0.032  Score=53.43  Aligned_cols=97  Identities=24%  Similarity=0.249  Sum_probs=74.8

Q ss_pred             cCCCCCCeEEEEEecCCeEEEEEEeCCCCe--EEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcC
Q 018389          238 TAPYHEPFCLDIYISKASVRACIVHRVTSK--VVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTP  315 (357)
Q Consensus       238 Td~Y~rPfRL~VfrSNKHIYAQVIDD~~Gk--TLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDp  315 (357)
                      +.|-+ .|+|.|+-|-.++.++|.| ..|.  ||+-+|.-.-.+|...  ...--||..+++-+|+.|++.||..|.-=.
T Consensus       113 ~~p~~-~f~~vI~aSfNNTIVTlTD-~~GNv~tl~WSSAG~~GFKGsK--KsTpfAAQ~aae~aakka~~~GIk~V~V~v  188 (233)
T PTZ00090        113 IEPTD-RFMLVITTSKNNVHAQVVN-KSKNYKTVFGSFAGNVGFRKKL--QQSERCAYRIGENIAKKCRRLGIFAVDIKF  188 (233)
T ss_pred             ecCCC-cEEEEEEeccCcEEEEEEe-CCCCEEEEEEEcccccCcccCc--cCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence            33433 4889999999999999998 5566  5877777777777643  345689999999999999999999875331


Q ss_pred             CCCcchhhHHHHHHHHHHHcCcEEEEE
Q 018389          316 RKGEKLEGKLQIVLQAIIDNGVNVKVK  342 (357)
Q Consensus       316 R~GykYHGRVKAfADAaRE~GL~FK~~  342 (357)
                      + |-   |...+.+.++..+||++..-
T Consensus       189 K-Gp---GgREtALRaL~~~GLkIt~I  211 (233)
T PTZ00090        189 R-RI---MRVETVLQAFYANGLQVTQI  211 (233)
T ss_pred             e-CC---ChHHHHHHHHHHCCCEEEEE
Confidence            2 32   44889999999999987653

>TIGR03632 bact_S11 30S ribosomal protein S11

Probab=96.31  E-value=0.058  Score=45.49  Aligned_cols=88  Identities=16%  Similarity=0.127  Sum_probs=67.4

Q ss_pred             EEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHHH
Q 018389          247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQ  326 (357)
Q Consensus       247 L~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRVK  326 (357)
                      +-|+.|.+.+...|.|. +|.+++.+|.-...++..  .....-||..+++.++++|++.||..|..=.| |.-+ || +
T Consensus         3 ~hI~~s~NNT~itlTd~-~g~~~~~~S~G~~gfkg~--rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~k-G~G~-gr-~   76 (108)
T TIGR03632         3 AHIHATFNNTIVTITDP-QGNVLSWASAGAVGFKGS--KKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVK-GPGA-GR-E   76 (108)
T ss_pred             EEEEccCCCEEEEEEcC-CCCEEEEEecCceeeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEE-CCCC-cH-H
Confidence            56888999999999884 688999988877777764  34567889999999999999999998753322 3222 65 5


Q ss_pred             HHHHHHHHcCcEEE
Q 018389          327 IVLQAIIDNGVNVK  340 (357)
Q Consensus       327 AfADAaRE~GL~FK  340 (357)
                      ++..+|...||++.
T Consensus        77 ~~ir~l~~~glkI~   90 (108)
T TIGR03632        77 SAIRALQAAGLEVT   90 (108)
T ss_pred             HHHHHHHHCCCEEE
Confidence            66777888898753

This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.

>CHL00041 rps11 ribosomal protein S11

Probab=96.20  E-value=0.069  Score=45.69  Aligned_cols=89  Identities=15%  Similarity=0.156  Sum_probs=69.5

Q ss_pred             EEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHH
Q 018389          246 CLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL  325 (357)
Q Consensus       246 RL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRV  325 (357)
                      .+.|+.|.+.+...|.| ..|.+++.+|.-.-.++..-  ....-||..+++-+++.|++.||..|..=. .|.- .|| 
T Consensus        15 i~hI~~t~NNTiiTlTd-~~G~~l~~~S~G~~gfKg~r--K~T~~Aa~~~a~~~~~~~~~~gi~~v~I~i-kG~G-~Gr-   88 (116)
T CHL00041         15 VIHIQASFNNTIVTVTD-VRGRVISWSSAGACGFKGAR--KGTPFAAQTAAENAIRTVIDQGMKRAEVMI-KGPG-LGR-   88 (116)
T ss_pred             EEEEEcccCCEEEEEEc-CCCCEEEEEecCceeeCCCc--cCCHHHHHHHHHHHHHHHHHcCCcEEEEEE-ECCC-CcH-
Confidence            47788899999999987 56899999998877777642  456789999999999999999999875332 2332 377 


Q ss_pred             HHHHHHHHHcCcEEE
Q 018389          326 QIVLQAIIDNGVNVK  340 (357)
Q Consensus       326 KAfADAaRE~GL~FK  340 (357)
                      +++..+|+..||++.
T Consensus        89 ~~~ir~l~~~glkI~  103 (116)
T CHL00041         89 DTALRAIRRSGLKLS  103 (116)
T ss_pred             HHHHHHHHHCCCEEE
Confidence            556688899999753

>PRK05309 30S ribosomal protein S11; Validated

Probab=95.71  E-value=0.17  Score=44.19  Aligned_cols=89  Identities=16%  Similarity=0.152  Sum_probs=68.3

Q ss_pred             EEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhHH
Q 018389          246 CLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKL  325 (357)
Q Consensus       246 RL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYHGRV  325 (357)
                      .+.|+-|.+.....|.| .+|.+++.+|.-.-.++..  .....-||..+++.+++.|++.||..|..-.+ |.- -|| 
T Consensus        19 i~hI~~t~NNTiitlTd-~~G~~~~~~S~G~~gfKg~--rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ik-G~G-~Gr-   92 (128)
T PRK05309         19 VAHIHATFNNTIVTITD-RQGNVISWASAGGLGFKGS--RKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVK-GPG-SGR-   92 (128)
T ss_pred             EEEEEccCCCEEEEEEc-CCCCEEEEEecCccEeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEE-CCC-CcH-
Confidence            58899999999999987 6789999888877677663  34567899999999999999999998753322 332 266 


Q ss_pred             HHHHHHHHHcCcEEE
Q 018389          326 QIVLQAIIDNGVNVK  340 (357)
Q Consensus       326 KAfADAaRE~GL~FK  340 (357)
                      .+++-+|...||++.
T Consensus        93 ~~air~L~~~glkI~  107 (128)
T PRK05309         93 ESAIRALQAAGLEVT  107 (128)
T ss_pred             HHHHHHHHHCCCEEE
Confidence            556667777899754

>TIGR03628 arch_S11P archaeal ribosomal protein S11P

Probab=92.18  E-value=2.7  Score=36.52  Aligned_cols=91  Identities=16%  Similarity=0.165  Sum_probs=63.3

Q ss_pred             EEEEecCCeEEEEEEeCCCC-eEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC--Ccch--
Q 018389          247 LDIYISKASVRACIVHRVTS-KVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRK--GEKL--  321 (357)
Q Consensus       247 L~VfrSNKHIYAQVIDD~~G-kTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~--GykY--  321 (357)
                      +-|+-|-+.....|.| ..| .||+-+|.-....+..  ..+.--||...++-+|++|++.||..|..-.|+  |.+-  
T Consensus         5 ~hI~as~NNTiitvTD-~~G~~~~~~~S~G~~g~kg~--kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~   81 (114)
T TIGR03628         5 AHIYSSFNNTIITITD-ITGAETIARSSGGMVVKADR--DESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKS   81 (114)
T ss_pred             EEEEccCCCeEEEEEc-CCCCEEEEEecCcceEeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCC
Confidence            4577788888888887 556 6787777666555442  234557899999999999999999998755444  2221  


Q ss_pred             --hhHHHHHHHHHHHcCcEEEE
Q 018389          322 --EGKLQIVLQAIIDNGVNVKV  341 (357)
Q Consensus       322 --HGRVKAfADAaRE~GL~FK~  341 (357)
                        -||- +.+.+|+..||++..
T Consensus        82 ~G~Gr~-~air~l~~~glkI~~  102 (114)
T TIGR03628        82 PGPGAQ-AAIRALARAGLRIGR  102 (114)
T ss_pred             CCCcHH-HHHHHHHHCCCEEEE
Confidence              1554 345677889998653

This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.

>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed

Probab=91.83  E-value=2.9  Score=37.24  Aligned_cols=92  Identities=16%  Similarity=0.124  Sum_probs=63.9

Q ss_pred             EEEEEecCCeEEEEEEeCCCC-eEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC--Ccc--
Q 018389          246 CLDIYISKASVRACIVHRVTS-KVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRK--GEK--  320 (357)
Q Consensus       246 RL~VfrSNKHIYAQVIDD~~G-kTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~--Gyk--  320 (357)
                      .+.|+-|-+.....|.| ..| .||+-+|.-....+..  .....-||...++-+|++|++.||..|..-.++  |..  
T Consensus        11 i~hI~as~NNTivtvTD-~~G~~~~~~~S~G~~g~kg~--kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~   87 (132)
T PRK09607         11 IAHIYASFNNTIITITD-LTGAETIAKSSGGMVVKADR--DESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQK   87 (132)
T ss_pred             EEEEEcccCCeEEEEEc-CCCCEEEEEecCcceeeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCc
Confidence            36778888888899987 567 4887777665544432  233557899999999999999999998755444  111  


Q ss_pred             --hhhHHHHHHHHHHHcCcEEEE
Q 018389          321 --LEGKLQIVLQAIIDNGVNVKV  341 (357)
Q Consensus       321 --YHGRVKAfADAaRE~GL~FK~  341 (357)
                        =-|+-. .+.+|...||++..
T Consensus        88 ~~G~Gr~~-airal~~~glkI~~  109 (132)
T PRK09607         88 SPGPGAQA-AIRALARAGLRIGR  109 (132)
T ss_pred             CCCCcHHH-HHHHHHHCCCEEEE
Confidence              125544 45677888998653

>PTZ00129 40S ribosomal protein S14; Provisional

Probab=90.04  E-value=4.5  Score=36.82  Aligned_cols=93  Identities=17%  Similarity=0.185  Sum_probs=67.0

Q ss_pred             EEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC--CCcch--
Q 018389          246 CLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPR--KGEKL--  321 (357)
Q Consensus       246 RL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR--~GykY--  321 (357)
                      .+.|+-|-++....|.| .+|.+++.+|+-.-.++.... .+.--||...++.+|+.|++.||..|..-.|  +|..-  
T Consensus        30 i~hI~as~NNTiItiTD-~~G~~~~w~SsG~~gfKg~r~-KsTpyAAq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg  107 (149)
T PTZ00129         30 VAHIFASFNDTFIHVTD-LSGRETLVRVTGGMKVKADRD-ESSPYAAMMAAQDVAARCKELGINALHIKLRATGGVRTKT  107 (149)
T ss_pred             EEEEEcccCCeEEEEEc-ccCCEEEEEecCcceeccccc-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCC
Confidence            46788888888889987 678888888887777765421 2345688999999999999999999764432  22222  


Q ss_pred             --hhHHHHHHHHHHHcCcEEEE
Q 018389          322 --EGKLQIVLQAIIDNGVNVKV  341 (357)
Q Consensus       322 --HGRVKAfADAaRE~GL~FK~  341 (357)
                        -|+- +.+.+|..+||++..
T Consensus       108 ~GpGr~-~airaL~~~glkI~~  128 (149)
T PTZ00129        108 PGPGAQ-AALRALARAGLKIGR  128 (149)
T ss_pred             CCCCHH-HHHHHHHHCCCEEEE
Confidence              2554 456788889998754

>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]

Probab=86.14  E-value=6.9  Score=34.95  Aligned_cols=84  Identities=19%  Similarity=0.207  Sum_probs=58.1

Q ss_pred             EecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC-CcchhhHHHHH
Q 018389          250 YISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRK-GEKLEGKLQIV  328 (357)
Q Consensus       250 frSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~-GykYHGRVKAf  328 (357)
                      +-|-..-...|- |.+|.+++.+|+=--.+|..-  .+.--||...++.+|+.|++.||..|..-.++ |   -|| .|.
T Consensus        24 ~asfNNTivtit-D~~Gn~i~wassG~~gfk~~r--k~tpyAA~~aa~~aa~~a~e~Gi~~v~v~vkgpG---~Gr-eaA   96 (129)
T COG0100          24 HASFNNTIVTIT-DLTGNVIIWASSGGMGFKGSR--KSTPYAAQLAAEDAAKKAKEHGIKSVEVKVKGPG---PGR-EAA   96 (129)
T ss_pred             EcccCCcEEEec-CCCCCEEEEEecCCceEcCCC--CCCHHHHHHHHHHHHHHHHHhCccEEEEEEECCC---CcH-HHH
Confidence            334333333444 588999999999988888753  55778889999999999999999987533233 4   244 344


Q ss_pred             HHHHHHcCcEEE
Q 018389          329 LQAIIDNGVNVK  340 (357)
Q Consensus       329 ADAaRE~GL~FK  340 (357)
                      ..+|...||.+.
T Consensus        97 iraL~~ag~~i~  108 (129)
T COG0100          97 IRALAAAGLKIT  108 (129)
T ss_pred             HHHHHHccceEE
Confidence            455557888653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	357
1ovy_A	120	Solution Structure Of Ribosomal Protein L18 From Ba		5e-04

>pdb|1OVY|A Chain A, Solution Structure Of Ribosomal Protein L18 From Bacillus Stearothermophilus Length = 120

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 228 RVRTPTFNQLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTR 287
           R+R   F     P      L ++ S   + A I+    S  +V A ++ K+  F LDST 
Sbjct: 17  RIRKKIFGTTERPR-----LSVFRSNKHIYAQIIDDTKSATIVSASTLDKE--FGLDSTN 69
Query: 288 NATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
           N  A   VG ++A+RAL   I  VV+  R G    G+++ +  A  + G+
Sbjct: 70  NIEAAKKVGELVAKRALEKGIKQVVF-DRGGYLYHGRVKALADAAREAGL 118
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	357
3r8s_O	116	50S ribosomal protein L18; protein biosynthesis, R	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O 2i2v_O ... Length = 116

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 264 VTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVY 313
             S+V+V A ++ K +   L  T N  A AAVG  +A+RAL   I DV +
Sbjct: 42  NGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSF 91

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 41/303 (13%), Positives = 79/303 (26%), Gaps = 96/303 (31%)

Query: 59  SPLLSSKGPHFGGYNVELVDDE--TWQVSAGLAHAWRGLDEDKEA---KSDVNVVDDDD- 112
           +P   S          E + D   TW         W+ ++ DK     +S +NV++  + 
Sbjct: 326 NPRRLSI---IA----ESIRDGLATWD-------NWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 113 -----DATSFEGDS------------DFDEIDNMRIRGDLFYK--LDKDSKEFEEYSFDF 153
                  + F   +            D  + D M +   L     ++K  KE        
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 154 HRRKSSKTKEGNKDSEKKEASKAKTDKKECQKKEALKRKSD---------AKESKRKESP 204
           +     K  E      +         K                        K  +  E  
Sbjct: 432 YLELKVKL-ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-- 488

Query: 205 RPNLASRDDEFNKIVMSDDNVEKRVR------------TPTFNQLTAPYHEPFCLDIYIS 252
                 R   F  + +    +E+++R              T  QL   Y    C +    
Sbjct: 489 ------RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPKY 541

Query: 253 KASVRACI--VHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHD 310
           +  V A +  + ++   ++      SK                     L + AL  +  +
Sbjct: 542 ERLVNAILDFLPKIEENLI-----CSKYTD------------------LLRIALMAE-DE 577

Query: 311 VVY 313
            ++
Sbjct: 578 AIF 580

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	357
3r8s_O	116	50S ribosomal protein L18; protein biosynthesis, R	100.0
3bbo_Q	161	Ribosomal protein L18; large ribosomal subunit, sp	100.0
3v2d_S	112	50S ribosomal protein L18; ribosome associated inh	100.0
1ovy_A	120	50S ribosomal protein L18; ribosome; NMR {Geobacil	100.0
2zjr_L	114	50S ribosomal protein L18; ribosome, large ribosom	99.97
1vq8_N	187	50S ribosomal protein L18P; ribosome 50S, protein-	99.96
3j21_O	203	50S ribosomal protein L18P; archaea, archaeal, KIN	99.95
2zkr_n	297	60S ribosomal protein L5; protein-RNA complex, 60S	99.89
4a17_M	301	RPL5, 60S ribosomal protein L5; eukaryotic ribosom	99.81
3u5e_D	297	60S ribosomal protein L5; translation, ribosome, r	99.81
3iz5_Q	304	60S ribosomal protein L5 (L18P); eukaryotic riboso	99.66
2vqe_K	129	30S ribosomal protein S11, 30S ribosomal protein S	95.57
3r8n_K	117	30S ribosomal protein S11; protein biosynthesis, R	94.87
3j20_M	137	30S ribosomal protein S11P; archaea, archaeal, KIN	94.1
3bbn_K	140	Ribosomal protein S11; small ribosomal subunit, sp	93.59
2xzm_K	151	RPS14E; ribosome, translation; 3.93A {Tetrahymena	93.42
3u5c_O	137	RP59A, 40S ribosomal protein S14-A; translation, r	88.5

>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...

Probab=100.00  E-value=5.3e-36  Score=251.65  Aligned_cols=96  Identities=29%  Similarity=0.391  Sum_probs=93.2

Q ss_pred             CCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcch
Q 018389          242 HEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKL  321 (357)
Q Consensus       242 ~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykY  321 (357)
                      .+| ||+||+||+|||||||||.+|+|||||||+|++++..+.+++|++||..||++||+||+++||++|+|| |+||+|
T Consensus        21 ~rp-RL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD-rgg~~y   98 (116)
T 3r8s_O           21 GAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFD-RSGFQY   98 (116)
T ss_dssp             TCC-EEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHHHTTTCCCCEEE-CTTSCS
T ss_pred             CCC-EEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cCCCcc
Confidence            455 999999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             hhHHHHHHHHHHHcCcEE
Q 018389          322 EGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       322 HGRVKAfADAaRE~GL~F  339 (357)
                      ||||+||||+|||+||+|
T Consensus        99 hGrV~Ala~~are~Gl~f  116 (116)
T 3r8s_O           99 HGRVQALADAAREAGLQF  116 (116)
T ss_dssp             SSHHHHHHHHHHHTTCCC
T ss_pred             cHHHHHHHHHHHHhCCCC
Confidence            999999999999999987

>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=4.6e-36  Score=265.02  Aligned_cols=102  Identities=19%  Similarity=0.358  Sum_probs=95.9

Q ss_pred             cccCCCCCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccC--CCCCHHHHHHHHHHHHHHHHhCCCCEEEE
Q 018389          236 QLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLD--STRNATACAAVGGILAQRALADDIHDVVY  313 (357)
Q Consensus       236 qrTd~Y~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~--St~NveAAa~VGkvLAeRakekGI~~VVF  313 (357)
                      ...+...+| ||+||+||+|||||||||.+|+|||+|||+|++|+..++  +++|++||+.||++||+||+++||++|+|
T Consensus        58 ki~gt~~rP-RL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk~~l~~g~~~n~~AA~~VG~liAeRA~e~GI~~VvF  136 (161)
T 3bbo_Q           58 KVEGTPERP-RLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKVAF  136 (161)
T ss_dssp             GGGGSSSCC-CCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSSSHHHHTSSCCCCC
T ss_pred             hhccCCCCC-EEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHHhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence            344445677 899999999999999999999999999999999998887  68999999999999999999999999999


Q ss_pred             cCCCCcchhhHHHHHHHHHHHcCcEE
Q 018389          314 TPRKGEKLEGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       314 DpR~GykYHGRVKAfADAaRE~GL~F  339 (357)
                      | |+||+|||||+||||+|||+||+|
T Consensus       137 D-Rgg~~YhGRVkAladaaRe~GL~F  161 (161)
T 3bbo_Q          137 D-RGGYPYHGRVKALADAAREKGLQF  161 (161)
T ss_dssp             C-CSSSCSSSTTHHHHHHHTTTTCCC
T ss_pred             e-CCCCcchHHHHHHHHHHHHhCCcC
Confidence            9 999999999999999999999987

>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...

Probab=100.00  E-value=1.9e-34  Score=241.79  Aligned_cols=90  Identities=23%  Similarity=0.346  Sum_probs=87.2

Q ss_pred             CCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchh
Q 018389          243 EPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLE  322 (357)
Q Consensus       243 rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYH  322 (357)
                      +| ||+||+||+|||||||||.+|+||+||||+|++++     ++|++||..||++||+||+++||++|+|| |+||+||
T Consensus        23 rp-RL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k-----~~n~~AA~~vG~llA~ra~~~GI~~vvfD-rgg~~yh   95 (112)
T 3v2d_S           23 RL-RLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRALAEKALALGIKQVAFD-RGPYKYH   95 (112)
T ss_dssp             CC-EEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC-----CCHHHHHHHHHHHHHHHHHTTTCCBCEEE-CTTSCSC
T ss_pred             CC-EEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc-----CCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cCCCccc
Confidence            66 99999999999999999999999999999999985     68999999999999999999999999999 9999999


Q ss_pred             hHHHHHHHHHHHcCcEE
Q 018389          323 GKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       323 GRVKAfADAaRE~GL~F  339 (357)
                      |||+||||+|||+||+|
T Consensus        96 GrV~Ala~~are~GL~f  112 (112)
T 3v2d_S           96 GRVKALAEGAREGGLEF  112 (112)
T ss_dssp             SSTTHHHHHHHHTTCBC
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999999987

>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1

Probab=100.00  E-value=1.3e-34  Score=244.99  Aligned_cols=100  Identities=29%  Similarity=0.483  Sum_probs=92.8

Q ss_pred             cccCCCCCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcC
Q 018389          236 QLTAPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTP  315 (357)
Q Consensus       236 qrTd~Y~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDp  315 (357)
                      ...+...+| ||+||+||+|||||||||.+|+||+||||+|++++  +.+++|++||..||++||+||+++||++|+|| 
T Consensus        21 ki~gt~~rp-RL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~--~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD-   96 (120)
T 1ovy_A           21 KIFGTTERP-RLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--LDSTNNIEAAKKVGELVAKRALEKGIKQVVFD-   96 (120)
T ss_dssp             ---CCSSCC-SEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTC--SSCTTSHHHHHHHHHHHHHHHHHHSSSCCCCC-
T ss_pred             HhcCCCCCC-EEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhC--cCCCCcHHHHHHHHHHHHHHHHHCCCCEEEEe-
Confidence            344456777 89999999999999999999999999999999998  67889999999999999999999999999999 


Q ss_pred             CCCcchhhHHHHHHHHHHHcCcEE
Q 018389          316 RKGEKLEGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       316 R~GykYHGRVKAfADAaRE~GL~F  339 (357)
                      |+||+|||||+||||+|||+||+|
T Consensus        97 rgg~~yhgrV~ala~~are~GL~f  120 (120)
T 1ovy_A           97 RGGYLYHGRVKALADAAREAGLEF  120 (120)
T ss_dssp             STTCSSCSSTHHHHHHHHHHHCCC
T ss_pred             cCCccccHHHHHHHHHHHHhCCcC
Confidence            999999999999999999999987

>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P

Probab=99.97  E-value=8.9e-33  Score=232.24  Aligned_cols=90  Identities=26%  Similarity=0.376  Sum_probs=83.2

Q ss_pred             CCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcch
Q 018389          242 HEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKL  321 (357)
Q Consensus       242 ~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykY  321 (357)
                      .+| ||+||+||+|||||||||.+|+||+||||+|  |    .+++|++||..||++||+||+++||++|+|| |+||+|
T Consensus        25 ~rp-RL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l----~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD-rgg~~y   96 (114)
T 2zjr_L           25 GRL-RLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L----KSGNKTDTAAAVGKALAAAAAEKGIKQVVFD-RGSYKY   96 (114)
T ss_dssp             CSE-EECCCTTSSCCCCCEEETTTTEECCCCCSCS--C----CTTCSSSSHHHHHHHHHHHHHTTCCCCCEEC-CCSSCS
T ss_pred             CCC-EEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h----cCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cCCccc
Confidence            355 9999999999999999999999999999999  4    4678999999999999999999999999999 999999


Q ss_pred             hhHHHHHHHHHHHcCcEE
Q 018389          322 EGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       322 HGRVKAfADAaRE~GL~F  339 (357)
                      ||||+||||++||+||+|
T Consensus        97 hgrV~Ala~~are~GL~f  114 (114)
T 2zjr_L           97 HGRVKALADAAREGGLDF  114 (114)
T ss_dssp             CSHHHHHHHHHHHHC---
T ss_pred             cHHHHHHHHHHHHhCCcC
Confidence            999999999999999987

>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...

Probab=99.96  E-value=6.7e-30  Score=230.09  Aligned_cols=96  Identities=20%  Similarity=0.185  Sum_probs=91.4

Q ss_pred             eEEEEEecCCeEEEEEE--eCCCCeEEEEEcccchhhhccc-CCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcch
Q 018389          245 FCLDIYISKASVRACIV--HRVTSKVVVVAHSISKDMKFDL-DSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKL  321 (357)
Q Consensus       245 fRL~VfrSNKHIYAQVI--DD~~GkTLaSAST~EkdIK~~L-~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykY  321 (357)
                      +||+||+||+|||||||  ||.+|+|||||||.|++ +..+ .+++|++||..||.+||+||+++||++|+|| |+|++|
T Consensus        33 pRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k~~~~N~~AA~~vG~llA~Ral~kGI~~vvfD-rgg~~y  110 (187)
T 1vq8_N           33 PRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLD-IGLNSP  110 (187)
T ss_dssp             CEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEE-CTTSCC
T ss_pred             CEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEc-CCCcee
Confidence            49999999999999999  99999999999999999 7667 6689999999999999999999999999999 999999


Q ss_pred             h--hHHHHHHHHHHHcCcEEEEE
Q 018389          322 E--GKLQIVLQAIIDNGVNVKVK  342 (357)
Q Consensus       322 H--GRVKAfADAaRE~GL~FK~~  342 (357)
                      |  |||+|||++|||+||+|...
T Consensus       111 h~GgRV~Ala~gAre~GL~fph~  133 (187)
T 1vq8_N          111 TPGSKVFAIQEGAIDAGLDIPHN  133 (187)
T ss_dssp             CTTCHHHHHHHHHHHTTCBCCCC
T ss_pred             ccchHHHHHHHHhhcCCEeccCC
Confidence            9  99999999999999998654

>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.95  E-value=1.1e-28  Score=224.60  Aligned_cols=98  Identities=19%  Similarity=0.192  Sum_probs=90.5

Q ss_pred             CCeEEEEEecCCeEEEEEEe--CCCCeEEEEEcccchhhhcc-cCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCc
Q 018389          243 EPFCLDIYISKASVRACIVH--RVTSKVVVVAHSISKDMKFD-LDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGE  319 (357)
Q Consensus       243 rPfRL~VfrSNKHIYAQVID--D~~GkTLaSAST~EkdIK~~-L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~Gy  319 (357)
                      +| ||+||+||+||||||||  +.+|+|||||||.|+.++.. +.+++|++||..||.+||+||+++||++|+|| |+|+
T Consensus        32 kp-RL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~~~~~N~~AA~~vG~llA~Ral~kGI~~vvfD-rgg~  109 (203)
T 3j21_O           32 KP-RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKQAGIEEAILD-IGLH  109 (203)
T ss_dssp             CC-EEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCCSCTTSHHHHHHHHHHSSSSTTSSCCCCCEEE-CCSS
T ss_pred             CC-EEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhcccCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEe-cCcc
Confidence            55 99999999999999998  78899999999999997543 46788999999999999999999999999999 9999


Q ss_pred             ch--hhHHHHHHHHHHHcCcEEEEE
Q 018389          320 KL--EGKLQIVLQAIIDNGVNVKVK  342 (357)
Q Consensus       320 kY--HGRVKAfADAaRE~GL~FK~~  342 (357)
                      +|  ||||+|||++|||+||+|-..
T Consensus       110 ~y~~hgRV~Ala~gAre~GL~iPhs  134 (203)
T 3j21_O          110 PPVRGSSVFAVLKGAVDAGLNVPHS  134 (203)
T ss_dssp             CCCTTSHHHHHHHHHHHHTCCCCCC
T ss_pred             eeccCcchhhhhhhcccCCeecccC
Confidence            99  799999999999999988654

>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.89  E-value=2.4e-23  Score=198.03  Aligned_cols=96  Identities=15%  Similarity=0.182  Sum_probs=88.9

Q ss_pred             eEEEEEecCCeEEEEEEeCC--CCeEEEEEcccchhhhcccC-CCCCHHHHHHHHHHHHHHHHhC---------------
Q 018389          245 FCLDIYISKASVRACIVHRV--TSKVVVVAHSISKDMKFDLD-STRNATACAAVGGILAQRALAD---------------  306 (357)
Q Consensus       245 fRL~VfrSNKHIYAQVIDD~--~GkTLaSAST~EkdIK~~L~-St~NveAAa~VGkvLAeRakek---------------  306 (357)
                      |||+|++||+|||||||++.  .++|||||||.|.. +..+. +++|.+||..||.+||+||+++               
T Consensus        49 pRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~-kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~~g  127 (297)
T 2zkr_n           49 YRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELP-KYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTG  127 (297)
T ss_dssp             EEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGG-GTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSSS
T ss_pred             ceEEEEEecCcEEEEEEeccCCCCEEEEEeecCccc-ccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCcccccc
Confidence            49999999999999999988  99999999999998 64444 5789999999999999999999               


Q ss_pred             ------------CCCEEEEcCCCCcch--hhHHHHHHHHHHHcCcEEEEE
Q 018389          307 ------------DIHDVVYTPRKGEKL--EGKLQIVLQAIIDNGVNVKVK  342 (357)
Q Consensus       307 ------------GI~~VVFDpR~GykY--HGRVKAfADAaRE~GL~FK~~  342 (357)
                                  ||..|+|| |||++|  ||||.|+|++||++||.|=..
T Consensus       128 ~~~~ve~~~~~~gi~~vvfD-rGl~ryttggRVfa~akGArDgGL~~Phs  176 (297)
T 2zkr_n          128 DEYNVESIDGQPGAFTCYLD-AGLARTTTGNKVFGALKGAVDGGLSIPHS  176 (297)
T ss_dssp             CCCCCSSSCSSSCCCBEEEE-CTTSCCCTTCHHHHHHHHHHHTTCBCCCC
T ss_pred             ccccccccccCCCceEEEEe-cCCcccCCCchHHHHHHHHHhcCcccCCC
Confidence                        99999999 999999  999999999999999988543

>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M

Probab=99.81  E-value=3.5e-20  Score=176.77  Aligned_cols=94  Identities=20%  Similarity=0.164  Sum_probs=85.6

Q ss_pred             eEEEEEecCCeEEEEEEeC--CCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhC--------CCC-----
Q 018389          245 FCLDIYISKASVRACIVHR--VTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD--------DIH-----  309 (357)
Q Consensus       245 fRL~VfrSNKHIYAQVIDD--~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakek--------GI~-----  309 (357)
                      +||+|++||+|||||||++  ..|+|||||||.|++.......++|++||..||.+||+||+++        ||+     
T Consensus        49 pRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~~g~  128 (301)
T 4a17_M           49 YRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKVDGA  128 (301)
T ss_dssp             EEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSCCCS
T ss_pred             ceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCccccccc
Confidence            4999999999999999998  5669999999999985443346789999999999999999999        999     


Q ss_pred             --------------EEEEcCCCCcch--hhHHHHHHHHHHHcCcEE
Q 018389          310 --------------DVVYTPRKGEKL--EGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       310 --------------~VVFDpR~GykY--HGRVKAfADAaRE~GL~F  339 (357)
                                    .+++| +|+.++  +|||-|++.+|+++||.+
T Consensus       129 ~~~ve~~~~~~~~f~~~LD-~Gl~rtt~G~RVfaalKGA~DgGL~I  173 (301)
T 4a17_M          129 YFNVDEDQKEKKPFKAILD-AGLVRTTTGNRVFGVLKGACDGGINI  173 (301)
T ss_dssp             CCCGGGTCCSSCCCBCEEE-CTTSCCCSSCHHHHHHHHHHHTTCBC
T ss_pred             eeecccccCCCCceEEEEe-cCCcccCcccchhhhhhcccccCccc
Confidence                          69999 899999  999999999999999975

>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E

Probab=99.81  E-value=5e-20  Score=175.46  Aligned_cols=95  Identities=18%  Similarity=0.140  Sum_probs=86.2

Q ss_pred             CCeEEEEEecCCeEEEEEEeC--CCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhC--------CCCE--
Q 018389          243 EPFCLDIYISKASVRACIVHR--VTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD--------DIHD--  310 (357)
Q Consensus       243 rPfRL~VfrSNKHIYAQVIDD--~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakek--------GI~~--  310 (357)
                      +| ||+|++||+|||||||++  ..++|||||||.|.+.......++|++||..||.+||+||+++        ||++  
T Consensus        48 kp-RLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~  126 (297)
T 3u5e_D           48 KY-RLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVE  126 (297)
T ss_dssp             CC-EEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCC
T ss_pred             Cc-eEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccc
Confidence            55 999999999999999999  6789999999999985432236789999999999999999999        9998  


Q ss_pred             -----------------EEEcCCCCcch--hhHHHHHHHHHHHcCcEE
Q 018389          311 -----------------VVYTPRKGEKL--EGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       311 -----------------VVFDpR~GykY--HGRVKAfADAaRE~GL~F  339 (357)
                                       +++| +|+.++  +|||-|++.+|+++||.+
T Consensus       127 g~~~~ve~~~~~~~~f~~~LD-vGl~rtttG~RVfaalKGA~DgGL~I  173 (297)
T 3u5e_D          127 GEYELTEAVEDGPRPFKVFLD-IGLQRTTTGARVFGALKGASDGGLYV  173 (297)
T ss_dssp             CCCCCCCCCSSSCCCCBCEEE-CTTCCCCTTCSHHHHHHHHHHHTCBC
T ss_pred             cceeccccccCCCCceeEEEe-cCCCccCccceehhhhhcccccCccc
Confidence                             8999 899999  999999999999999975

>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...

Probab=95.57  E-value=0.089  Score=44.88  Aligned_cols=88  Identities=17%  Similarity=0.077  Sum_probs=69.6

Q ss_pred             eEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEE--EcCCCCcchh
Q 018389          245 FCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVV--YTPRKGEKLE  322 (357)
Q Consensus       245 fRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VV--FDpR~GykYH  322 (357)
                      ..+.|+-|.+.....|.| .+|.++..+|+-.-.+|..-  ...--||..+++.+|++|++.||..|.  +- -.|   -
T Consensus        17 gi~hI~as~NNTivtiTd-~~G~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vk-G~G---~   89 (129)
T 2vqe_K           17 GRAYIHASYNNTIVTITD-PDGNPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAYGMQSVDVIVR-GTG---A   89 (129)
T ss_dssp             EEEEEEECSSCEEEEEEC-TTSCEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTTTCCEEEEEEE-SCC---T
T ss_pred             eEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHhCCeEEEEEEE-CCC---C
Confidence            468899999999999987 77999999998887787653  457799999999999999999999864  33 122   2


Q ss_pred             hHHHHHHHHHHHcCcEEE
Q 018389          323 GKLQIVLQAIIDNGVNVK  340 (357)
Q Consensus       323 GRVKAfADAaRE~GL~FK  340 (357)
                      ||- +++.+|...||++.
T Consensus        90 Gre-~airaL~~~Gl~I~  106 (129)
T 2vqe_K           90 GRE-QAIRALQASGLQVK  106 (129)
T ss_dssp             THH-HHHHHHHTSSSEEE
T ss_pred             CHH-HHHHHHHHCCCEEE
Confidence            664 56788888898653

>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=94.10  E-value=0.43  Score=41.19  Aligned_cols=91  Identities=19%  Similarity=0.129  Sum_probs=64.3

Q ss_pred             EEEEEecCCeEEEEEEeCCCC-eEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC--Ccc--
Q 018389          246 CLDIYISKASVRACIVHRVTS-KVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRK--GEK--  320 (357)
Q Consensus       246 RL~VfrSNKHIYAQVIDD~~G-kTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~--Gyk--  320 (357)
                      .+-|+-|-+.....|.| .+| .||+.+|.-...++..  ..+.--||...++.+|++|++.||..|..-.++  |.+  
T Consensus        16 i~hI~asfNNTivtiTD-~~G~~~i~~~S~G~~gfkg~--~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~gg~~~~   92 (137)
T 3j20_M           16 IAHIYSSFNNTIIHITD-ITGAETISRWSGGMVVKADR--DEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSK   92 (137)
T ss_dssp             EEEEEECSSCEEEEEEE-SSSCSEEEEEEGGGTCSCTT--TSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCCSSSCC
T ss_pred             EEEEEcCCCCEEEEEEc-CCCCEEEEEEccceeeecCC--ccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCCCCc
Confidence            47788899999999988 557 5898777666655542  235678999999999999999999987533233  221  


Q ss_pred             --hhhHHHHHHHHHHHcCcEEE
Q 018389          321 --LEGKLQIVLQAIIDNGVNVK  340 (357)
Q Consensus       321 --YHGRVKAfADAaRE~GL~FK  340 (357)
                        --||-.| +.+|...||++.
T Consensus        93 ~pG~Gresa-iraL~~~Gl~I~  113 (137)
T 3j20_M           93 TPGPGAQAA-IRALARAGLKIG  113 (137)
T ss_dssp             SCCTHHHHH-HHHHHHHTCEEE
T ss_pred             CCCCcHHHH-HHHHHhCCCEEE
Confidence              1365444 456666798753

>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=93.59  E-value=0.1  Score=45.27  Aligned_cols=88  Identities=15%  Similarity=0.141  Sum_probs=69.1

Q ss_pred             eEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEE--EcCCCCcchh
Q 018389          245 FCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVV--YTPRKGEKLE  322 (357)
Q Consensus       245 fRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VV--FDpR~GykYH  322 (357)
                      ..+.|+-|.++....|.| .+|.+++.+|+-.-.+|..-  ...--||..+++.+|++|++.||..|.  +- --|   -
T Consensus        30 gi~hI~as~NNTivtiTD-~~G~~i~~~SaG~~GfKg~r--ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vk-G~G---~  102 (140)
T 3bbn_K           30 GVIHVQASFNNTIVTVTD-VRGRVVSWASAGTCGFRGTK--RGTPFAAQTAAGNAIRTVVEQGMQRAEVMIK-GPG---L  102 (140)
T ss_dssp             CEEEEEECSSCEEEEEEC-SSSCEEEEEETTTSSCCTTS--CSSHHHHHHHHTSGGGTSTTTCCCEEEEEEE-SCS---T
T ss_pred             eEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEcccc--cCCHHHHHHHHHHHHHHHHHhCCeEEEEEEE-CCC---C
Confidence            468999999999999987 77999999998877787753  567899999999999999999999864  33 122   2


Q ss_pred             hHHHHHHHHHHHcCcEEE
Q 018389          323 GKLQIVLQAIIDNGVNVK  340 (357)
Q Consensus       323 GRVKAfADAaRE~GL~FK  340 (357)
                      ||- +++.+|...||++.
T Consensus       103 GRe-aairaL~~~Gl~I~  119 (140)
T 3bbn_K          103 GRD-AALRAIRRSGILLS  119 (140)
T ss_dssp             TSS-HHHHHHHTTTCEEE
T ss_pred             cHH-HHHHHHHHCCCEEE
Confidence            543 56777778898653

>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*

Probab=93.42  E-value=0.25  Score=43.39  Aligned_cols=93  Identities=15%  Similarity=0.119  Sum_probs=61.8

Q ss_pred             eEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC--CCcc--
Q 018389          245 FCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPR--KGEK--  320 (357)
Q Consensus       245 fRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR--~Gyk--  320 (357)
                      ..+-|+-|.+.....|.| .+|.++++.||---..+..- ..+.--||...++.+|++|++.||..|..-.+  +|.+  
T Consensus        29 gi~hI~asfNNTiVtiTD-~~G~~~~~~ssgg~~~k~~r-~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vkG~gg~~~k  106 (151)
T 2xzm_K           29 GVCHIMATWNDTFIHVTD-LSGRETLVRVTGGMKVKADR-EESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGVETK  106 (151)
T ss_dssp             EEEEEEBCSSCBCCEEEC-TTCCSEEEECCHHHHCSSGG-GGSCHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCTTSCC
T ss_pred             eEEEEEccCCCEEEEEEC-CCCCEEEEEecCcceEeCCC-CcCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCCCCcc
Confidence            368888898899999987 55653434455443343321 13466788999999999999999998753322  2221  


Q ss_pred             --hhhHHHHHHHHHHHcCcEEE
Q 018389          321 --LEGKLQIVLQAIIDNGVNVK  340 (357)
Q Consensus       321 --YHGRVKAfADAaRE~GL~FK  340 (357)
                        --|| ++.+.+|...||++.
T Consensus       107 gpG~Gr-esairaL~~~GlkI~  127 (151)
T 2xzm_K          107 QPGPGA-QSALRALARSGMKIG  127 (151)
T ss_dssp             SCCSHH-HHHHHHHHHTSCEEE
T ss_pred             CCCccH-HHHHHHHHHCCCEEE
Confidence              1355 566677778898754

>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*

Probab=88.50  E-value=0.85  Score=39.36  Aligned_cols=91  Identities=18%  Similarity=0.189  Sum_probs=62.5

Q ss_pred             EEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC--CCcch--
Q 018389          246 CLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPR--KGEKL--  321 (357)
Q Consensus       246 RL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR--~GykY--  321 (357)
                      .+-|+-|.+.....|.| .+|.++...|+-.-.+|..- ..+.--||...++.+|++|++.||..|..-.|  +|.+.  
T Consensus        16 i~hI~asfNNTivtvTD-~~G~~~~~~ssG~~gfKg~r-~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vra~gg~~~kg   93 (137)
T 3u5c_O           16 VARIYASFNDTFVHVTD-LSGKETIARVTGGMKVKADR-DESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKT   93 (137)
T ss_dssp             ECCEEEETTEEEECCEE-TTSSSCCCCCBTTTTSCCST-TTTCHHHHHHHHHHHHHHHHHHTCCEEECEEECSCTTSCCS
T ss_pred             EEEEEccCCCEEEEEEc-CCCCEEEEEeCCCcEEeCCc-ccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeccCCCcccC
Confidence            35688888888889987 66777766677666676532 13466789999999999999999998753322  22222  


Q ss_pred             --hhHHHHHHHHHHHcCcEE
Q 018389          322 --EGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       322 --HGRVKAfADAaRE~GL~F  339 (357)
                        -||- +.+.+|...||++
T Consensus        94 pG~Gr~-sairaL~~~Gl~I  112 (137)
T 3u5c_O           94 PGPGGQ-AALRALARSGLRI  112 (137)
T ss_dssp             CCGGGH-HHHHHHHTTTCEE
T ss_pred             CCcchH-HHHHHHHhCCCEE
Confidence              2543 3445666779865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	357
d2gycm1	113	c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {E	4e-07
d1ovya_	97	c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacill	9e-07
d2j01s1	86	c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {	0.001

>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]

 Score = 45.7 bits (108), Expect = 4e-07
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
           L ++ +   + A ++    S+V+V A ++ K +   L  T N  A AAVG  +A+RAL  
Sbjct: 24  LVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEK 83

Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGV 337
            I DV +  R G +  G++Q +  A  + G+
Sbjct: 84  GIKDVSFD-RSGFQYHGRVQALADAAREAGL 113

>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Length = 97

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.5 bits (105), Expect = 9e-07
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
           L ++ S   + A I+    S  +V A ++ K+    LDST N  A   VG ++A+RAL  
Sbjct: 8   LSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--LDSTNNIEAAKKVGELVAKRALEK 65

Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQAIIDNGVN 338
            I  VV+  R G    G+++ +  A  + G+ 
Sbjct: 66  GIKQVVFD-RGGYLYHGRVKALADAAREAGLE 96

>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Length = 86

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Thermus thermophilus [TaxId: 274]

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 247 LDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALAD 306
           L ++ S   + A I+       +V A S++  +K              VG  LA++ALA 
Sbjct: 4   LSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRALAEKALAL 58

Query: 307 DIHDVVYTPRKGEKLEGKLQIVLQA 331
            I  V +  R   K  G+++ + + 
Sbjct: 59  GIKQVAF-DRGPYKYHGRVKALAEG 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	357
d2gycm1	113	Ribosomal protein L18 (L18p) {Escherichia coli [Ta	100.0
d1ovya_	97	Ribosomal protein L18 (L18p) {Bacillus stearotherm	100.0
d2j01s1	86	Ribosomal protein L18 (L18p) {Thermus thermophilus	99.97
d2zjrl1	104	Ribosomal protein L18 (L18p) {Deinococcus radiodur	99.97
d1vqon1	186	Ribosomal protein L18 (L18p) {Archaeon Haloarcula	99.93
d2uubk1	119	Ribosomal protein S11 {Thermus thermophilus [TaxId	96.03
d2qalk1	117	Ribosomal protein S11 {Escherichia coli [TaxId: 56	95.83
d1p5dx1	146	Phosphomannomutase/phosphoglucomutase {Pseudomonas	85.03

>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.3e-36  Score=248.39  Aligned_cols=92  Identities=30%  Similarity=0.402  Sum_probs=90.4

Q ss_pred             eEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchhhH
Q 018389          245 FCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLEGK  324 (357)
Q Consensus       245 fRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYHGR  324 (357)
                      +||+||+||+|||||||||.+|+||++|||++++++..++.++|++||..||++||+||+++||++|+|| |+||+||||
T Consensus        22 pRL~V~rSnkhiyaQiIdd~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la~ra~~~gI~~vvfD-R~g~~YhGr  100 (113)
T d2gycm1          22 TRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFD-RSGFQYHGR  100 (113)
T ss_dssp             CCCBEEECSSCEEEEEEETTTTEEEEEEETTGGGGTSCCSCSSSHHHHHHHHHHHHHHHHHHTCCCCCCB-CCSCCSSSH
T ss_pred             CeEEEEEeCCcEEEEEEEccCCcEEEEeeehhhhhhhhcCCCcchHHHHHHHHHHHHHHHHCCCCEEEEC-CCCCccchH
Confidence            3999999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHcCc
Q 018389          325 LQIVLQAIIDNGV  337 (357)
Q Consensus       325 VKAfADAaRE~GL  337 (357)
                      |+||||+|||+||
T Consensus       101 Vka~ad~aRe~Gl  113 (113)
T d2gycm1         101 VQALADAAREAGL  113 (113)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999999997

>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=7.2e-35  Score=235.93  Aligned_cols=94  Identities=30%  Similarity=0.504  Sum_probs=89.9

Q ss_pred             CCCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcch
Q 018389          242 HEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKL  321 (357)
Q Consensus       242 ~rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykY  321 (357)
                      .|| ||+||+||+|||||||||.+|+||+++||++++++.  ...+|++||..||++||+||+++||++|+|| |+||+|
T Consensus         4 ~rp-RL~V~kSnkhiyaQlIdd~~~~tl~s~St~~k~~~~--~~~~n~~aA~~vG~~~a~kak~~gi~~vvfD-r~g~~y   79 (97)
T d1ovya_           4 ERP-RLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGL--DSTNNIEAAKKVGELVAKRALEKGIKQVVFD-RGGYLY   79 (97)
T ss_dssp             SCC-SEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCS--SCTTSHHHHHHHHHHHHHHHHHHSSSCCCCC-STTCSS
T ss_pred             CCC-EEEEEEeCCeEEEEEEEcCCCeEEEEecchhhhhcc--cccCcHHHHHHHHHHHHHHHHHcCCCEEEEc-CCCCcc
Confidence            578 999999999999999999999999999999999975  4567999999999999999999999999999 999999


Q ss_pred             hhHHHHHHHHHHHcCcEE
Q 018389          322 EGKLQIVLQAIIDNGVNV  339 (357)
Q Consensus       322 HGRVKAfADAaRE~GL~F  339 (357)
                      ||||+||||+|||+||+|
T Consensus        80 hGrvka~a~~~R~~Gl~F   97 (97)
T d1ovya_          80 HGRVKALADAAREAGLEF   97 (97)
T ss_dssp             CSSTHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHhCCCC
Confidence            999999999999999987

>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=3e-34  Score=228.85  Aligned_cols=86  Identities=23%  Similarity=0.310  Sum_probs=82.1

Q ss_pred             CCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchh
Q 018389          243 EPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLE  322 (357)
Q Consensus       243 rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYH  322 (357)
                      || ||+||+||+|||||||||.+|+||+++||++++++.     .|+++|..||++||++|+++||++|+|| |+||+||
T Consensus         1 R~-RL~V~rSnk~iyaQiIDd~~~~tl~s~St~~k~~k~-----~~~~~A~~vG~~la~~ak~~gI~~v~FD-R~g~~YH   73 (86)
T d2j01s1           1 RL-RLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKG-----NKTEVARQVGRALAEKALALGIKQVAFD-RGPYKYH   73 (86)
T ss_dssp             SC-EEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCCS-----CHHHHHHHHHHHHHHHHHHTSCCCCBCC-CSTTCSS
T ss_pred             Cc-EEEEEEcCCeEEEEEEEcCCCeEEEEEeccchhhcC-----CCHHHHHHHHHHHHHHHHHCCCCEEEEe-CCCCccc
Confidence            45 999999999999999999999999999999998863     6899999999999999999999999999 9999999


Q ss_pred             hHHHHHHHHHHHc
Q 018389          323 GKLQIVLQAIIDN  335 (357)
Q Consensus       323 GRVKAfADAaRE~  335 (357)
                      |||+||||+|||+
T Consensus        74 Grvka~Ad~~Reg   86 (86)
T d2j01s1          74 GRVKALAEGAREG   86 (86)
T ss_dssp             SSCCCCSSCTTCC
T ss_pred             cHHHHHHHHHhCC
Confidence            9999999999986

>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.97  E-value=6.3e-33  Score=227.27  Aligned_cols=86  Identities=27%  Similarity=0.364  Sum_probs=81.4

Q ss_pred             CCeEEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCcchh
Q 018389          243 EPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKGEKLE  322 (357)
Q Consensus       243 rPfRL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~GykYH  322 (357)
                      +| ||+||+||+|||||||||.+|+||++|||.+++      .++++++|..||++||++|+++||++|+|| |+||+||
T Consensus        19 rp-RL~V~rSnkhiyaQiIDd~~~~tl~s~St~~~~------~~~~~~~a~~vG~~ia~~a~~kgi~~v~FD-R~g~~YH   90 (104)
T d2zjrl1          19 RL-RLSVYRSSKHIYAQIIDDSRGQTLAAASSAALK------SGNKTDTAAAVGKALAAAAAEKGIKQVVFD-RGSYKYH   90 (104)
T ss_dssp             SE-EECCCTTSSCCCCCEEETTTTEECCCCCSCSCC------TTCSSSSHHHHHHHHHHHHHTTCCCCCEEC-CCSSCSC
T ss_pred             Cc-EEEEEEccCeeEEEEEecCCCeEEEeecccccc------ccchhhHHHHHHHHHHHHHHHCCCCEEEEC-CCCCcch
Confidence            56 999999999999999999999999999998764      346889999999999999999999999999 9999999


Q ss_pred             hHHHHHHHHHHHcC
Q 018389          323 GKLQIVLQAIIDNG  336 (357)
Q Consensus       323 GRVKAfADAaRE~G  336 (357)
                      |||+||||+|||+|
T Consensus        91 Grvka~ad~~R~~G  104 (104)
T d2zjrl1          91 GRVKALADAAREGG  104 (104)
T ss_dssp             SHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHhCC
Confidence            99999999999998

>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.93  E-value=5.6e-26  Score=202.21  Aligned_cols=97  Identities=21%  Similarity=0.154  Sum_probs=90.3

Q ss_pred             CCeEEEEEecCCeEEEEEE--eCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC--C
Q 018389          243 EPFCLDIYISKASVRACIV--HRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRK--G  318 (357)
Q Consensus       243 rPfRL~VfrSNKHIYAQVI--DD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VVFDpR~--G  318 (357)
                      +| ||+|++||+|||||||  |+..++|||||||.|...+....+++|++||..||.+||+||+++||++|+|| +|  |
T Consensus        31 kp-RLvVrrSNk~IyaQII~~d~~gd~vlaSAsS~el~k~g~k~~~~N~~AAy~~G~liA~ra~~~gi~~vvfD-~G~~~  108 (186)
T d1vqon1          31 KP-RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLD-IGLNS  108 (186)
T ss_dssp             SC-EEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGSCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEE-CTTSC
T ss_pred             CC-eEEEEEeCCceEEEEEEecCCCCEEEEEEecchhhhhccccCccHHHHHHHhHHHHHHHHHhhcccceEEe-eCCCC
Confidence            45 9999999999999999  67789999999999998887777889999999999999999999999999999 66  9


Q ss_pred             cchhhHHHHHHHHHHHcCcEEEE
Q 018389          319 EKLEGKLQIVLQAIIDNGVNVKV  341 (357)
Q Consensus       319 ykYHGRVKAfADAaRE~GL~FK~  341 (357)
                      +.|||||+|||++||++||++-.
T Consensus       109 ~~yhgRV~A~akgard~GL~Iph  131 (186)
T d1vqon1         109 PTPGSKVFAIQEGAIDAGLDIPH  131 (186)
T ss_dssp             CCTTCHHHHHHHHHHHTTCBCCC
T ss_pred             CCccchHHHHHHHHHhcCccCCC
Confidence            99999999999999999998643

>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Thermus thermophilus [TaxId: 274]

Probab=96.03  E-value=0.025  Score=45.28  Aligned_cols=87  Identities=17%  Similarity=0.114  Sum_probs=67.0

Q ss_pred             EEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEE--EcCCCCcchhh
Q 018389          246 CLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVV--YTPRKGEKLEG  323 (357)
Q Consensus       246 RL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VV--FDpR~GykYHG  323 (357)
                      .+.|+-|.+++...|.| .+|.+|..+|+-...++..-  .....||..+++.++++|++.||..|.  +.   |.- -|
T Consensus         8 ivhI~~t~NNT~itlTD-~~Gn~i~~~S~G~~gfkg~r--k~t~~Aa~~~a~~~~~k~~~~g~~~v~v~~k---G~G-~g   80 (119)
T d2uubk1           8 RAYIHASYNNTIVTITD-PDGNPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAYGMQSVDVIVR---GTG-AG   80 (119)
T ss_dssp             EEEEEECSSCEEEEEEC-TTSCEEEEEETTTSSCCSGG--GGSHHHHHHHHHHHHHHHHTTTCCEEEEEEE---CCC-TT
T ss_pred             EEEEEeccCCEEEEEEC-CCCCEEEEEecccceecccc--ccchhHHHHHHHHHHHHHHHcCCcEEEEEEE---cCC-CC
Confidence            57788899999999987 66889988888776676532  356789999999999999999999864  44   321 36


Q ss_pred             HHHHHHHHHHHcCcEEE
Q 018389          324 KLQIVLQAIIDNGVNVK  340 (357)
Q Consensus       324 RVKAfADAaRE~GL~FK  340 (357)
                      | .++.-+|...||++.
T Consensus        81 R-~~~ik~l~~~g~kI~   96 (119)
T d2uubk1          81 R-EQAIRALQASGLQVK   96 (119)
T ss_dssp             H-HHHHHHHHTSSSEEE
T ss_pred             h-HHHHHHHHHCCCEEE
Confidence            6 455667888998754

>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.027  Score=45.04  Aligned_cols=91  Identities=12%  Similarity=0.108  Sum_probs=68.3

Q ss_pred             EEEEEecCCeEEEEEEeCCCCeEEEEEcccchhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEE--EcCCCCcchhh
Q 018389          246 CLDIYISKASVRACIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVV--YTPRKGEKLEG  323 (357)
Q Consensus       246 RL~VfrSNKHIYAQVIDD~~GkTLaSAST~EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VV--FDpR~GykYHG  323 (357)
                      .+.|+-|.+++...|.| .+|.++..+|.-...++..-.  ..-.||..+++.++++|++.||..|.  +.   |.= -|
T Consensus         8 i~hI~~t~NNTiitlTD-~~G~~~~~~S~G~~gfkg~~K--~t~~Aa~~~a~~~~~~~~~~gi~~v~V~~k---G~G-~G   80 (117)
T d2qalk1           8 VAHIHASFNNTIVTITD-RQGNALGWATAGGSGFRGSRK--STPFAAQVAAERCADAVKEYGIKNLEVMVK---GPG-PG   80 (117)
T ss_dssp             EEEEECCSSCCEEEEEE-TTSCEEEEEETTTSSCCHHHH--TSHHHHHHHHHHHHHHHGGGTCCEEEEEEE---CCS-TT
T ss_pred             EEEEEecCCCEEEEEEC-CCCCEEEEEeccccccccccc--cchHHHHHHHHHHHHHHHHcCCcEEEEEEe---CCC-Cc
Confidence            46788888888888887 779999888887777766433  35789999999999999999999864  44   221 15


Q ss_pred             HHHHHHHHHHHcCcEEEEEeec
Q 018389          324 KLQIVLQAIIDNGVNVKVKLKQ  345 (357)
Q Consensus       324 RVKAfADAaRE~GL~FK~~lkq  345 (357)
                      | .+...+|+.+||++ +.+.-
T Consensus        81 R-~~air~l~~~gl~I-~~I~D  100 (117)
T d2qalk1          81 R-ESTIRALNAAGFRI-TNITD  100 (117)
T ss_dssp             T-THHHHHHHHTTCEE-EEEEE
T ss_pred             h-HHHHHHHHhCCCEE-EEEEE
Confidence            6 35667789999974 34443

>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglucomutase, first 3 domains
superfamily: Phosphoglucomutase, first 3 domains
family: Phosphoglucomutase, first 3 domains
domain: Phosphomannomutase/phosphoglucomutase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.03  E-value=1.7  Score=34.47  Aligned_cols=63  Identities=19%  Similarity=0.221  Sum_probs=47.8

Q ss_pred             chhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCCEEE--EcCCCCcchhhHHHHHHHHHHHcCcEEE
Q 018389          276 SKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVV--YTPRKGEKLEGKLQIVLQAIIDNGVNVK  340 (357)
Q Consensus       276 EkdIK~~L~St~NveAAa~VGkvLAeRakekGI~~VV--FDpR~GykYHGRVKAfADAaRE~GL~FK  340 (357)
                      +.+||......-+-+-+..||..+|..+++.|...|+  +|.|..-  .--..+++.+|..+|+.+.
T Consensus         8 ~~dIRGi~~~~lt~~~~~~ig~a~~~~~~~~~~~~VvIg~D~R~ss--~~~~~~~~~gl~~~G~~V~   72 (146)
T d1p5dx1           8 AYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSG--PELVKQLIQGLVDCGCQVS   72 (146)
T ss_dssp             SSSEEEEBTTTBCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCTTH--HHHHHHHHHHHHTBTCEEE
T ss_pred             ccCEeeeCCCCcCHHHHHHHHHHHHHHHHhcCCCEEEEEECCccch--hhhhhhhheeeccCceEEE
Confidence            3455554444557899999999999999999888865  8865541  1236799999999999874