Citrus Sinensis ID: 018397

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF
cccHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHcccccEEEEEEccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccEEEEEccccHHHHHHHHHHHHHHcccccccccccccccEEEEEccccccEEccc
ccHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHEcccccEEEEEccccccEEcccccccEEEEEEcccccccccccccHHcHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccHHHcccccccHHHHHHHHcccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccEEEEEEcccccccEEEEEEEHHHHHHHHHHHHHHHHHHccccccccHcccccEEEEEccccccEEEEc
MKGETVVIITKFQLFNHINSLFfnlgsglssstafVCSSTVALMAAFGVEVPKKEIAQLTCECEQfigtqsggmDQAISIMAKSGfaelidfnpirttdvqlpaggTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAckngssdpvfavkepytaldiEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHafkdtvssnlseeDKLKKLGdlmndshhscsvlyecscpelEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSridrgvinnndlGLYVFaskpssgaakfkf
MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAasnynnrvVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAckngssdpvfaVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHafkdtvssnlseEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLyvfaskpssgaakfkf
MKGETVVIITKFQLFNHInslffnlgsglsssTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF
****TVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKIT*****************************AAHVYS*******************************SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFA************
MKGETV*IITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF
MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKP*********
MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query356 2.2.26 [Sep-21-2011]
Q9SEE5496 Galactokinase OS=Arabidop yes no 0.929 0.667 0.738 1e-140
Q54DN6501 Galactokinase OS=Dictyost yes no 0.887 0.630 0.378 9e-62
Q5XIG6458 N-acetylgalactosamine kin yes no 0.834 0.648 0.410 2e-59
Q68FH4458 N-acetylgalactosamine kin yes no 0.848 0.659 0.396 3e-58
Q01415458 N-acetylgalactosamine kin yes no 0.823 0.639 0.410 3e-55
Q5R6J8458 N-acetylgalactosamine kin yes no 0.823 0.639 0.407 1e-54
P04385528 Galactokinase OS=Saccharo yes no 0.893 0.602 0.347 7e-39
P09608503 Galactokinase OS=Kluyvero yes no 0.915 0.648 0.326 1e-35
P13045520 Protein GAL3 OS=Saccharom no no 0.882 0.603 0.315 5e-35
O42821504 Galactokinase OS=Candida N/A no 0.952 0.672 0.327 7e-35
>sp|Q9SEE5|GALK1_ARATH Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=1 SV=2 Back     alignment and function desciption
 Score =  498 bits (1281), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/336 (73%), Positives = 287/336 (85%), Gaps = 5/336 (1%)

Query: 26  GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
           GSGLSSS AFVCS+T+A+MA FG    KKE+AQLTCECE+ IGTQSGGMDQAISIMAK+G
Sbjct: 161 GSGLSSSAAFVCSATIAIMAVFGHNFEKKELAQLTCECERHIGTQSGGMDQAISIMAKTG 220

Query: 86  FAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
           FAELIDFNP+R TDV+LP GG+FV+AHSLAES KA+TAA NYNNRVVECRL +I+L +KL
Sbjct: 221 FAELIDFNPVRATDVKLPDGGSFVIAHSLAESQKAVTAAKNYNNRVVECRLASIILGVKL 280

Query: 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKE-----PYTALDIEKITEEKLT 200
           GM+P+EAISKVKTLSDVEGLCV+FA   GSSDP+ AVKE     PYTA +IEKI EEKL 
Sbjct: 281 GMEPKEAISKVKTLSDVEGLCVSFAGDRGSSDPLLAVKEYLKEEPYTAEEIEKILEEKLP 340

Query: 201 SIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN 260
           SI  N  +SL VLNAA  +KLHQRAAHVYSEA+RVH FKDTV+SNLS+E+KLKKLGDLMN
Sbjct: 341 SIVNNDPTSLAVLNAATHFKLHQRAAHVYSEARRVHGFKDTVNSNLSDEEKLKKLGDLMN 400

Query: 261 DSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 320
           +SH+SCSVLYECSCPELEELV VC+ NGALGARLTGAGWGGC VALVKE   +QFI  +K
Sbjct: 401 ESHYSCSVLYECSCPELEELVQVCKENGALGARLTGAGWGGCAVALVKEFDVTQFIPAVK 460

Query: 321 EQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 356
           E++Y+ R+++GV+   D+ LY+FASKPSSGAA F  
Sbjct: 461 EKYYKKRVEKGVVKKEDMELYLFASKPSSGAAIFNL 496
Sugar-1-kinase with a very high substrate specificity for the alpha-anomeric configuration of D-galacose (D-Gal). Converts also efficiently 2-deoxy-D-Gal to 2-deoxy-D-al-1-phosphate.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 6
>sp|Q54DN6|GALK_DICDI Galactokinase OS=Dictyostelium discoideum GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q5XIG6|GALK2_RAT N-acetylgalactosamine kinase OS=Rattus norvegicus GN=Galk2 PE=2 SV=1 Back     alignment and function description
>sp|Q68FH4|GALK2_MOUSE N-acetylgalactosamine kinase OS=Mus musculus GN=Galk2 PE=1 SV=1 Back     alignment and function description
>sp|Q01415|GALK2_HUMAN N-acetylgalactosamine kinase OS=Homo sapiens GN=GALK2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R6J8|GALK2_PONAB N-acetylgalactosamine kinase OS=Pongo abelii GN=GALK2 PE=2 SV=1 Back     alignment and function description
>sp|P04385|GAL1_YEAST Galactokinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL1 PE=1 SV=4 Back     alignment and function description
>sp|P09608|GAL1_KLULA Galactokinase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GAL1 PE=2 SV=2 Back     alignment and function description
>sp|P13045|GAL3_YEAST Protein GAL3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL3 PE=1 SV=2 Back     alignment and function description
>sp|O42821|GAL1_CANPA Galactokinase OS=Candida parapsilosis GN=GAL1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
255556438 499 galactokinase, putative [Ricinus communi 0.929 0.663 0.803 1e-157
356521747 497 PREDICTED: galactokinase-like [Glycine m 0.929 0.665 0.809 1e-156
356565073 497 PREDICTED: galactokinase-like [Glycine m 0.929 0.665 0.812 1e-156
224108774 496 predicted protein [Populus trichocarpa] 0.929 0.667 0.809 1e-156
224101523 496 predicted protein [Populus trichocarpa] 0.929 0.667 0.806 1e-155
225432012 499 PREDICTED: galactokinase [Vitis vinifera 0.929 0.663 0.800 1e-152
84468320 496 putative galactose kinase [Trifolium pra 0.929 0.667 0.791 1e-152
449466203426 PREDICTED: galactokinase-like [Cucumis s 0.929 0.776 0.779 1e-151
357479039 497 Galactokinase [Medicago truncatula] gi|3 0.929 0.665 0.782 1e-151
449516960 499 PREDICTED: galactokinase-like [Cucumis s 0.929 0.663 0.779 1e-151
>gi|255556438|ref|XP_002519253.1| galactokinase, putative [Ricinus communis] gi|223541568|gb|EEF43117.1| galactokinase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 270/336 (80%), Positives = 301/336 (89%), Gaps = 5/336 (1%)

Query: 26  GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
           GSGLSSS AFVCS+T+A+MAAF V  PKKEIAQLTCECE+ IGTQSGGMDQAIS+MA++G
Sbjct: 164 GSGLSSSAAFVCSATIAIMAAFNVNFPKKEIAQLTCECERHIGTQSGGMDQAISVMAQTG 223

Query: 86  FAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
           FAELIDFNPIR TDVQLPAGGTFV+AHSLAES KA+TAA+NYNNRVVECRL AI+L +KL
Sbjct: 224 FAELIDFNPIRATDVQLPAGGTFVIAHSLAESQKAVTAATNYNNRVVECRLAAILLGVKL 283

Query: 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKE-----PYTALDIEKITEEKLT 200
           GMKPQ+AI KVKTLSDVEGLCV+FA    S+DP  AVKE     PY+A +IEKITEE L+
Sbjct: 284 GMKPQDAILKVKTLSDVEGLCVSFAGTRDSADPAVAVKEFLKEEPYSAEEIEKITEEDLS 343

Query: 201 SIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN 260
           SIF+NS +SLDVL AAK +KLHQRAAHVYSEAKRVHAFKDTVSS LS+EDKLKKLGDLMN
Sbjct: 344 SIFSNSPTSLDVLKAAKHFKLHQRAAHVYSEAKRVHAFKDTVSSKLSDEDKLKKLGDLMN 403

Query: 261 DSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 320
           +SH+SCS+LYECSCPELEELV VCR +GALGARLTGAGWGGC VALVKE+I  QFILNLK
Sbjct: 404 ESHYSCSILYECSCPELEELVKVCREHGALGARLTGAGWGGCAVALVKEAIVPQFILNLK 463

Query: 321 EQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 356
           E+F+QSRID+GVI  +DLGLYVFASKPSSGAA FKF
Sbjct: 464 EKFFQSRIDKGVIKKSDLGLYVFASKPSSGAAIFKF 499

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356521747|ref|XP_003529513.1| PREDICTED: galactokinase-like [Glycine max] Back     alignment and taxonomy information
>gi|356565073|ref|XP_003550769.1| PREDICTED: galactokinase-like [Glycine max] Back     alignment and taxonomy information
>gi|224108774|ref|XP_002314964.1| predicted protein [Populus trichocarpa] gi|222864004|gb|EEF01135.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224101523|ref|XP_002312315.1| predicted protein [Populus trichocarpa] gi|222852135|gb|EEE89682.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432012|ref|XP_002279647.1| PREDICTED: galactokinase [Vitis vinifera] gi|296083222|emb|CBI22858.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|84468320|dbj|BAE71243.1| putative galactose kinase [Trifolium pratense] Back     alignment and taxonomy information
>gi|449466203|ref|XP_004150816.1| PREDICTED: galactokinase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357479039|ref|XP_003609805.1| Galactokinase [Medicago truncatula] gi|355510860|gb|AES92002.1| Galactokinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449516960|ref|XP_004165514.1| PREDICTED: galactokinase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
TAIR|locus:2084344496 GALK [Arabidopsis thaliana (ta 0.901 0.647 0.739 6.8e-127
RGD|1308691458 Galk2 "galactokinase 2" [Rattu 0.851 0.661 0.412 1.6e-56
UNIPROTKB|F1MFK7447 GALK2 "Uncharacterized protein 0.853 0.680 0.411 2.9e-55
MGI|MGI:1917226458 Galk2 "galactokinase 2" [Mus m 0.856 0.665 0.400 3.7e-55
DICTYBASE|DDB_G0292112501 galK "galactokinase" [Dictyost 0.862 0.612 0.388 4.8e-55
UNIPROTKB|E1C902398 GALK2 "Uncharacterized protein 0.859 0.768 0.416 1.6e-54
UNIPROTKB|F1P1D1461 GALK2 "Uncharacterized protein 0.859 0.663 0.416 1.6e-54
UNIPROTKB|E2RDA6458 GALK2 "Uncharacterized protein 0.851 0.661 0.406 8.9e-54
UNIPROTKB|F1SQG6458 GALK2 "Uncharacterized protein 0.851 0.661 0.406 1.9e-53
ZFIN|ZDB-GENE-041114-143457 galk2 "galactokinase 2" [Danio 0.845 0.658 0.403 8e-53
TAIR|locus:2084344 GALK [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1246 (443.7 bits), Expect = 6.8e-127, P = 6.8e-127
 Identities = 241/326 (73%), Positives = 280/326 (85%)

Query:    34 AFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93
             AFVCS+T+A+MA FG    KKE+AQLTCECE+ IGTQSGGMDQAISIMAK+GFAELIDFN
Sbjct:   169 AFVCSATIAIMAVFGHNFEKKELAQLTCECERHIGTQSGGMDQAISIMAKTGFAELIDFN 228

Query:    94 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153
             P+R TDV+LP GG+FV+AHSLAES KA+TAA NYNNRVVECRL +I+L +KLGM+P+EAI
Sbjct:   229 PVRATDVKLPDGGSFVIAHSLAESQKAVTAAKNYNNRVVECRLASIILGVKLGMEPKEAI 288

Query:   154 SKVKTLSDVEGLCVAFACKNGSSDPVFAVKE-----PYTALDIEKITEEKLTSIFANSSS 208
             SKVKTLSDVEGLCV+FA   GSSDP+ AVKE     PYTA +IEKI EEKL SI  N  +
Sbjct:   289 SKVKTLSDVEGLCVSFAGDRGSSDPLLAVKEYLKEEPYTAEEIEKILEEKLPSIVNNDPT 348

Query:   209 SLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSV 268
             SL VLNAA  +KLHQRAAHVYSEA+RVH FKDTV+SNLS+E+KLKKLGDLMN+SH+SCSV
Sbjct:   349 SLAVLNAATHFKLHQRAAHVYSEARRVHGFKDTVNSNLSDEEKLKKLGDLMNESHYSCSV 408

Query:   269 LYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRI 328
             LYECSCPELEELV VC+ NGALGARLTGAGWGGC VALVKE   +QFI  +KE++Y+ R+
Sbjct:   409 LYECSCPELEELVQVCKENGALGARLTGAGWGGCAVALVKEFDVTQFIPAVKEKYYKKRV 468

Query:   329 DRGVINNNDLGLYVFASKPSSGAAKF 354
             ++GV+   D+ LY+FASKPSSGAA F
Sbjct:   469 EKGVVKKEDMELYLFASKPSSGAAIF 494
GO:0004335 "galactokinase activity" evidence=IEA;IGI;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006012 "galactose metabolic process" evidence=IEA;IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0016301 "kinase activity" evidence=IEA
GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA
GO:0046835 "carbohydrate phosphorylation" evidence=IEA;IDA
GO:0005829 "cytosol" evidence=IDA
RGD|1308691 Galk2 "galactokinase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MFK7 GALK2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1917226 Galk2 "galactokinase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292112 galK "galactokinase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E1C902 GALK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1D1 GALK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDA6 GALK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQG6 GALK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-143 galk2 "galactokinase 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SEE5GALK1_ARATH2, ., 7, ., 1, ., 60.73800.92970.6673yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.60.946
3rd Layer2.7.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_X0656
galactokinase (EC-2.7.1.6) (496 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00061661
galactose-1-phosphate uridylyltransferase (EC-2.7.7.10) (348 aa)
•  • •• 0.943
estExt_fgenesh4_pm.C_LG_III0678
hypothetical protein (1114 aa)
• •  •• 0.932
fgenesh4_pg.C_LG_I000259
hypothetical protein (1110 aa)
• •  •• 0.931
gw1.XIX.1583.1
alpha-galactosidase (380 aa)
     •  0.899
gw1.X.3030.1
alpha-galactosidase (EC-2.4.1.67) (369 aa)
     •  0.899
gw1.44.267.1
hypothetical protein (643 aa)
     •  0.899
fgenesh4_pm.C_LG_IV000085
hypothetical protein (379 aa)
     •  0.899
fgenesh4_pg.C_scaffold_164000005
alpha-galactosidase (EC-3.2.1.22) (367 aa)
     •  0.899
eugene3.00101110
alpha-galactosidase (EC-3.2.1.22) (386 aa)
     •  0.899
gw1.VI.1302.1
galactokinase (EC-2.7.1.6) (413 aa)
  •  • •0.841

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
PLN02521497 PLN02521, PLN02521, galactokinase 0.0
COG0153390 COG0153, GalK, Galactokinase [Carbohydrate transpo 2e-50
TIGR00131386 TIGR00131, gal_kin, galactokinase 2e-43
PRK03817351 PRK03817, PRK03817, galactokinase; Provisional 1e-28
PRK05322387 PRK05322, PRK05322, galactokinase; Provisional 2e-26
PRK00555363 PRK00555, PRK00555, galactokinase; Provisional 2e-21
PRK05101382 PRK05101, PRK05101, galactokinase; Provisional 2e-19
PLN02865423 PLN02865, PLN02865, galactokinase 2e-16
COG1577307 COG1577, ERG12, Mevalonate kinase [Lipid metabolis 5e-13
PTZ00298328 PTZ00298, PTZ00298, mevalonate kinase; Provisional 7e-13
TIGR00549274 TIGR00549, mevalon_kin, mevalonate kinase 2e-12
pfam0854486 pfam08544, GHMP_kinases_C, GHMP kinases C terminal 7e-12
pfam0028867 pfam00288, GHMP_kinases_N, GHMP kinases N terminal 3e-10
PRK03926302 PRK03926, PRK03926, mevalonate kinase; Provisional 1e-09
PTZ00290468 PTZ00290, PTZ00290, galactokinase; Provisional 5e-09
TIGR00549274 TIGR00549, mevalon_kin, mevalonate kinase 8e-05
COG1577307 COG1577, ERG12, Mevalonate kinase [Lipid metabolis 1e-04
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase Back     alignment and domain information 
 Score =  619 bits (1599), Expect = 0.0
 Identities = 258/336 (76%), Positives = 291/336 (86%), Gaps = 5/336 (1%)

Query: 26  GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
           GSGLSSS A VCS+ +A+MAA G+   KKE+AQ TC+CE+ IGTQSGGMDQAISIMA+ G
Sbjct: 161 GSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQG 220

Query: 86  FAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
            A+LIDFNP+R TDVQLPAGGTFV+A+SLAES KA+TAA+NYNNRVVECRL AIVLA+KL
Sbjct: 221 VAKLIDFNPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKL 280

Query: 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKE-----PYTALDIEKITEEKLT 200
           GM  +EAISKVKTLSDVEGLCV+FA  +GSSDP  AVKE     PYTA +IE+I  E LT
Sbjct: 281 GMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLT 340

Query: 201 SIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN 260
           SIF NS +SL VL AAK +KLHQRA HVYSEAKRVHAF+DTVSS+LSEE+KLKKLGDLMN
Sbjct: 341 SIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMN 400

Query: 261 DSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 320
           +SH+SCSVLYECSCPELEELV VCR+NGALGARLTGAGWGGC VALVKE+I  QFIL LK
Sbjct: 401 ESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALK 460

Query: 321 EQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 356
           E+FY+SRI++GVI   DLGLYVFASKPSSGAA  KF
Sbjct: 461 EKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAILKF 496

Length = 497
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase Back     alignment and domain information
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase Back     alignment and domain information
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase Back     alignment and domain information
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal Back     alignment and domain information
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain Back     alignment and domain information
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase Back     alignment and domain information
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 356
PLN02521497 galactokinase 100.0
COG0153390 GalK Galactokinase [Carbohydrate transport and met 100.0
PLN02865423 galactokinase 100.0
PTZ00290468 galactokinase; Provisional 100.0
PRK05322387 galactokinase; Provisional 100.0
PRK05101382 galactokinase; Provisional 100.0
PRK00555363 galactokinase; Provisional 100.0
TIGR00131386 gal_kin galactokinase. The galactokinases found by 100.0
PRK03817351 galactokinase; Provisional 100.0
KOG0631489 consensus Galactokinase [Carbohydrate transport an 100.0
PLN02677387 mevalonate kinase 100.0
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 100.0
PTZ00298328 mevalonate kinase; Provisional 100.0
COG2605333 Predicted kinase related to galactokinase and meva 99.98
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 99.97
KOG1511397 consensus Mevalonate kinase MVK/ERG12 [Lipid trans 99.97
PRK03926302 mevalonate kinase; Provisional 99.97
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 99.97
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 99.96
PLN02451370 homoserine kinase 99.94
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 99.92
PRK01212301 homoserine kinase; Provisional 99.92
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 99.9
PTZ00299336 homoserine kinase; Provisional 99.89
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.88
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 99.87
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.87
PRK01123282 shikimate kinase; Provisional 99.87
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.86
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 99.85
COG1907312 Predicted archaeal sugar kinases [General function 99.84
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 99.82
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 99.81
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.79
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.78
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.77
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.75
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.73
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.73
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.73
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.73
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.59
PRK00650288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.55
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 99.55
PF0028867 GHMP_kinases_N: GHMP kinases N terminal domain; In 99.54
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 99.51
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.5
COG1685278 Archaeal shikimate kinase [Amino acid transport an 99.49
COG1947289 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p 99.48
KOG1537355 consensus Homoserine kinase [Amino acid transport 99.31
PRK05905258 hypothetical protein; Provisional 99.3
KOG4644948 consensus L-fucose kinase [Carbohydrate transport 99.22
PRK04181257 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.0
COG4542293 PduX Protein involved in propanediol utilization, 98.96
PLN02407343 diphosphomevalonate decarboxylase 98.95
COG3407329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 98.79
KOG2833395 consensus Mevalonate pyrophosphate decarboxylase [ 98.76
COG3890337 ERG8 Phosphomevalonate kinase [Lipid metabolism] 98.46
COG1829283 Predicted archaeal kinase (sugar kinase superfamil 98.44
KOG4519459 consensus Phosphomevalonate kinase [Lipid transpor 97.77
>PLN02521 galactokinase Back     alignment and domain information 
Probab=100.00  E-value=4e-60  Score=474.74  Aligned_cols=344  Identities=75%  Similarity=1.123  Sum_probs=295.7

Q ss_pred             CcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEEec
Q 018397           13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF   92 (356)
Q Consensus        13 ~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~d~   92 (356)
                      .||++.|+|+||+++|||||||++||++.+++.+++.++++++++++|.++|+++|.++|+|||+++++|+.++++++||
T Consensus       148 ~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~  227 (497)
T PLN02521        148 VGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDF  227 (497)
T ss_pred             CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEec
Confidence            49999999999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             CCCeeEEeecCCCcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhcc
Q 018397           93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK  172 (356)
Q Consensus        93 ~~~~~~~~~~p~~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g~  172 (356)
                      +++.++++++|.++.|+|++|++++.|+.++++.||.|++||+.|+++|+++.++..++....+++|||+++++-.+.|.
T Consensus       228 ~~l~~~~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~  307 (497)
T PLN02521        228 NPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGS  307 (497)
T ss_pred             CCCceEEeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhccc
Confidence            99999999999899999999999999999999999999999999999999888775443222467899987654444454


Q ss_pred             CCCCCCccccc-----CCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCC
Q 018397          173 NGSSDPVFAVK-----EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS  247 (356)
Q Consensus       173 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~  247 (356)
                      .+...++..++     ..|++++++++++..++++++...+..+.+...+.+.+++|+.|+++|+.||.+++++|++++.
T Consensus       308 ~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~  387 (497)
T PLN02521        308 HGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLS  387 (497)
T ss_pred             ccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCc
Confidence            44444443332     5678888888766445555444444444444566788999999999999999999999988654


Q ss_pred             chHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcc
Q 018397          248 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR  327 (356)
Q Consensus       248 ~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~  327 (356)
                      .+.+++.||++|+++|.++|++|+||||++|.|++++++.|++|+||||||||||+++|++++.++++++.+.+.|+++.
T Consensus       388 ~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG~GG~~i~lv~~~~~~~~~~~l~~~y~~~~  467 (497)
T PLN02521        388 EEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYKSR  467 (497)
T ss_pred             cchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCCCCeEEEEEECHHHHHHHHHHHHHHHHhhc
Confidence            44569999999999999999999999999999999999999999999999999999999999889999999999999876


Q ss_pred             cCCCcccCCCCcceEEEeecCCceeeccC
Q 018397          328 IDRGVINNNDLGLYVFASKPSSGAAKFKF  356 (356)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~  356 (356)
                      +.++.+.+.++++.+|+++|++||++++|
T Consensus       468 ~~~~~~~~~~~~~~~~~~~p~~Ga~~~~~  496 (497)
T PLN02521        468 IEKGVIKEEDLGLYVFASKPSSGAAILKF  496 (497)
T ss_pred             cccccccccCCCCcEEEEecCCCceEeec
Confidence            43345666678899999999999999876

>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02865 galactokinase Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism] Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2 Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05905 hypothetical protein; Provisional Back     alignment and domain information
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism] Back     alignment and domain information
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] Back     alignment and domain information
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] Back     alignment and domain information
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
2a2d_A478 X-Ray Structure Of Human N-Acetyl Galactosamine Kin 2e-56
2aj4_A548 Crystal Structure Of Saccharomyces Cerevisiae Galac 2e-36
3v5r_A505 Crystal Structure Of The Unliganded Form Of Gal3p L 5e-35
3v2u_C520 Crystal Structure Of The Yeast Gal Regulon Complex 6e-35
1pie_A419 Crystal Structure Of Lactococcus Lactis Galactokina 5e-11
2hfu_A332 Crystal Structure Of L. Major Mevalonate Kinase In 4e-10
1s4e_A352 Pyrococcus Furiosus Galactokinase In Complex With G 1e-09
2hfs_A332 Crystal Structure Of L. Major Mevalonate Kinase Len 2e-09
2cz9_A350 Crystal Structure Of Galactokinase From Pyrococcus 1e-08
2x7i_A308 Crystal Structure Of Mevalonate Kinase From Methici 3e-05
1vis_A324 Crystal Structure Of Mevalonate Kinase Length = 324 1e-04
1kkh_A317 Crystal Structure Of The Methanococcus Jannaschii M 1e-04
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase Complexed With Mn-Amppnp And N-Acetyl Glactosamine Length = 478 Back     alignment and structure 
Iteration: 1

 Score =  215 bits (548), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/329 (41%), Positives = 193/329 (58%), Gaps = 36/329 (10%)
Query: 34  AFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93
           A VC + +  +   G  + K E+A++  + E++IGT+ GGMDQ+IS +A+ G A+LI+F+
Sbjct: 169 ALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFS 228
Query: 94  PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153
           P+R TDV+LP+G  FV+A+S  E  KA  A S++N RV+ECRL A +LA    ++     
Sbjct: 229 PLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKYKSLQ----W 282
Query: 154 SKVKTLSDVEGLCVAFACKNG-SSDPVFAV------KEPYTALDIEKIT----EEKLTSI 202
            KV  L +V+        K G S + +  V       EPY   +I +      EE  T I
Sbjct: 283 DKVLRLEEVQA-------KLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQI 335
Query: 203 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS 262
              S ++ DVL     +KL+QRA HVYSEA RV  FK       + E+ ++ LG+LMN S
Sbjct: 336 L--SPNTQDVL----IFKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQS 387
Query: 263 HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQ 322
           H SC  +YECSCPEL++LV++CR  GA G+RLTGAGWGGC V++V       F+ N+ + 
Sbjct: 388 HMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKA 447
Query: 323 FYQSRIDRGVINNNDLGLYVFASKPSSGA 351
           +YQ R D  +         +FA+KP  GA
Sbjct: 448 YYQ-RSDGSLAPEKQ---SLFATKPGGGA 472
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Galactokinase In Complex With Galactose And Mg:amppnp Length = 548 Back     alignment and structure
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p Length = 505 Back     alignment and structure
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The Repressor, Gal80p, And The Transducer, Gal3p, With Galactose And Atp Length = 520 Back     alignment and structure
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase Complexed With Galactose Length = 419 Back     alignment and structure
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex With R-Mevalonate Length = 332 Back     alignment and structure
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With Galactose, Adp And Magnesium Length = 352 Back     alignment and structure
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase Length = 332 Back     alignment and structure
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus Horikoshi Length = 350 Back     alignment and structure
>pdb|2X7I|A Chain A, Crystal Structure Of Mevalonate Kinase From Methicillin- Resistant Staphylococcus Aureus Mrsa252 Length = 308 Back     alignment and structure
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase Length = 324 Back     alignment and structure
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Mevalonate Kinase Length = 317 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 2e-97
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 5e-85
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 7e-58
1pie_A419 Galactokinase; galactose, galactosemia, transferas 3e-56
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 2e-53
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 1e-25
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 1e-09
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 7e-25
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 1e-10
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 7e-24
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 6e-12
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 3e-23
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 2e-10
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 4e-19
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 1e-07
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 5e-15
3k17_A365 LIN0012 protein; protein structure initiative II(P 2e-11
3k17_A365 LIN0012 protein; protein structure initiative II(P 9e-07
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 Back     alignment and structure
 Score =  296 bits (759), Expect = 2e-97
 Identities = 130/330 (39%), Positives = 187/330 (56%), Gaps = 14/330 (4%)

Query: 25  LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84
             SGLSSS+A VC + +  +   G  + K E+A++  + E++IGT+ GGMDQ+IS +A+ 
Sbjct: 160 PSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEE 219

Query: 85  GFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144
           G A+LI+F+P+R TDV+LP+G  FV+A+S  E  KA  A S++N RV+ECRL A +LA  
Sbjct: 220 GTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKY 277

Query: 145 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEPYTALDIEKITEEKLTSIFA 204
             ++      KV  L +V+        +           EPY   +I +     L  +  
Sbjct: 278 KSLQWD----KVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRT 333

Query: 205 NSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHH 264
              S          +KL+QRA HVYSEA RV  FK       + E+ ++ LG+LMN SH 
Sbjct: 334 QILSPNTQD--VLIFKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHM 389

Query: 265 SCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 324
           SC  +YECSCPEL++LV++CR  GA G+RLTGAGWGGC V++V       F+ N+ + +Y
Sbjct: 390 SCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYY 449

Query: 325 QSRIDRGVINNNDLGLYVFASKPSSGAAKF 354
           Q    R   +       +FA+KP  GA   
Sbjct: 450 Q----RSDGSLAPEKQSLFATKPGGGALVL 475
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 100.0
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 100.0
1pie_A419 Galactokinase; galactose, galactosemia, transferas 100.0
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 100.0
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 100.0
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 100.0
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 100.0
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 100.0
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 100.0
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 99.98
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 99.98
3k17_A365 LIN0012 protein; protein structure initiative II(P 99.98
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 99.97
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 99.97
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 99.96
1h72_C296 HK, homoserine kinase; transferase, threonine bios 99.96
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 99.93
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.91
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 99.9
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 99.88
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.83
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.82
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 99.79
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 99.75
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 99.74
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 99.74
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 99.63
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure
Probab=100.00  E-value=1.8e-58  Score=464.95  Aligned_cols=339  Identities=31%  Similarity=0.500  Sum_probs=281.8

Q ss_pred             cCCcEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeE
Q 018397           11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA   87 (356)
Q Consensus        11 ~~~g~~i~i~s~IP~~~GLGSSaAl~va~~~al~~l~---~~~ls~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~   87 (356)
                      ..+||++.|+|+||.|+||  |||++||++.|++.++   +.++++.+++++|+++|+++|.+||+|||+++++|+.+++
T Consensus       144 ~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~  221 (520)
T 3v2u_C          144 PLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHA  221 (520)
T ss_dssp             CCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBE
T ss_pred             CCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeE
Confidence            3479999999999999999  9999999999999998   7789999999999999998999999999999999999999


Q ss_pred             EEEecCC-CeeEEeecCC----CcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCch----hhhhhhcc
Q 018397           88 ELIDFNP-IRTTDVQLPA----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ----EAISKVKT  158 (356)
Q Consensus        88 ~~~d~~~-~~~~~~~~p~----~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~----~~~~~~~~  158 (356)
                      +++||++ ++++++++|+    ++.|+|++|++.++++.+++++||.|++||+.|+++|++++++...    +......+
T Consensus       222 l~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~s  301 (520)
T 3v2u_C          222 LYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGN  301 (520)
T ss_dssp             EEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCC
T ss_pred             EEEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCccccccccccccccc
Confidence            9999999 9999999987    7999999999988899999999999999999999999999876421    00011237


Q ss_pred             chhhhhhhhh-hhccCCCC------------CCcccc-------cCCCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhh
Q 018397          159 LSDVEGLCVA-FACKNGSS------------DPVFAV-------KEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ  218 (356)
Q Consensus       159 Lr~v~~~~~~-~~g~~~~~------------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (356)
                      ||++.+.+.. +.+....+            +|.+++       +++|+++++.+.++.+.+++.+.++..+++  +.+.
T Consensus       302 LRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~  379 (520)
T 3v2u_C          302 LRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPV--RFQV  379 (520)
T ss_dssp             HHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCE--EESC
T ss_pred             HHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcccccc--cccc
Confidence            8887654321 11111111            111111       136888888887775444554444554443  4455


Q ss_pred             HHHHHHHhhHHhHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCceeEEec
Q 018397          219 YKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTG  296 (356)
Q Consensus       219 ~~~~~r~~~~i~E~~rv~~~~~al~~~~--~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsG  296 (356)
                      +.+++|++|+++|+.|+.+++++|.+++  +.++|++.||++|+++|.+||++|+||||++|.|+++|++.|++|+||||
T Consensus       380 ~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~~Ga~GarlTG  459 (520)
T 3v2u_C          380 LKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTG  459 (520)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhCCCCEEEEec
Confidence            6789999999999999999999999863  22347999999999999999999999999999999999999999999999


Q ss_pred             cCCcceEEEEe---cCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeecCCceeecc
Q 018397          297 AGWGGCVVALV---KESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK  355 (356)
Q Consensus       297 aG~GG~vi~l~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~  355 (356)
                      ||||||+|+|+   +++.++++++.|++.|+++.+  |.++++++++.+|+++|+.||+|+.
T Consensus       460 aG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~--~~~~~~~~~~~~~~~~p~~GA~i~~  519 (520)
T 3v2u_C          460 AGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRY--PDLTDEELKDAIIVSKPALGTCLYE  519 (520)
T ss_dssp             SCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHC--TTCCHHHHHHHEEECCCCCCSEEEE
T ss_pred             CCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CccccccCCCeEEEecCCCceEEee
Confidence            99999999999   788999999999999998876  5455566788999999999999974
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 356
d1piea2183 d.58.26.7 (A:214-396) Galactokinase {Lactococcus l 6e-24
d1s4ea2171 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyro 9e-23
d1wuua2176 d.58.26.7 (A:217-392) Galactokinase {Human (Homo s 2e-20
d1wuua1215 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapi 3e-16
d1kvka2169 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Ratt 9e-16
d1s4ea1176 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococ 3e-15
d1piea1205 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lact 7e-14
d1kkha2137 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon 1e-11
d1kkha1180 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Met 1e-07
d1k47a2135 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PM 6e-06
d1kvka1225 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus 2e-05
d1k47a1194 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) 7e-05
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 183 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

 Score = 94.7 bits (235), Expect = 6e-24
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 22/174 (12%)

Query: 181 AVKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 240
           A+K   T LDI+ + E       AN+    D         L +RA H   E  R    + 
Sbjct: 30  ALKRMQTRLDIQSLGELSNEEFDANTDLIGDET-------LIKRARHAVYENNRTKIAQ- 81

Query: 241 TVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGW 299
                      L K G+L+N SH S    YE +  EL+ L    +   G LGAR+TGAG+
Sbjct: 82  ----KAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGF 137

Query: 300 GGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 353
           GGC +ALV     S F   + + + +                 + ++  SG+ K
Sbjct: 138 GGCAIALVAHDNVSAFRKAVGQVYEEVV---------GYPASFYVAQIGSGSTK 182
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 171 Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 215 Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 176 Back     information, alignment and structure
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 205 Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 137 Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 180 Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 135 Back     information, alignment and structure
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 225 Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 194 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 100.0
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 100.0
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.86
d1s4ea1176 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 99.85
d1piea1205 Galactokinase {Lactococcus lactis [TaxId: 1358]} 99.82
d1wuua1215 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 99.81
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 99.7
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.6
d1kkha1180 Mevalonate kinase {Archaeon Methanococcus jannasch 99.59
d1kvka1225 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.47
d1h72c1163 Homoserine kinase {Archaeon Methanococcus jannasch 99.45
d1k47a1194 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.31
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 98.9
d1oj4a1163 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 98.62
d1ueka1148 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 98.37
d1fi4a1188 Mevalonate 5-diphosphate decarboxylase {Baker's ye 97.65
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 97.39
d1oj4a2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 95.99
d1fi4a2203 Mevalonate 5-diphosphate decarboxylase {Baker's ye 84.28
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.1e-38  Score=277.50  Aligned_cols=182  Identities=27%  Similarity=0.409  Sum_probs=157.4

Q ss_pred             CcEEEEEecCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhhccchhhhhhhhhhhccCCCCCCcccccC
Q 018397          105 GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKE  184 (356)
Q Consensus       105 ~~~~ll~~s~~~~~~~~~~~~~~~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~Lr~v~~~~~~~~g~~~~~~~~~~~~~  184 (356)
                      ++.|+|+||++   +|.++++.||.|+.||+.|++.+..++++         +.|++++.                    
T Consensus         1 dy~lvi~dS~v---~h~L~~s~Yn~R~~ec~~a~~~v~~~~~~---------~~L~~v~~--------------------   48 (183)
T d1piea2           1 DYDIVIMNTNK---PRALTESKYNERFAETREALKRMQTRLDI---------QSLGELSN--------------------   48 (183)
T ss_dssp             TEEEEEEECCC---CCCTTCHHHHHHHHHHHHHHHHHHHHCCC---------SSGGGCCH--------------------
T ss_pred             CeEEEEEeCCC---CcCcCcchhHHHHHHHHHHHHHHHHhcCc---------chHhhhcH--------------------
Confidence            57899999999   55678899999999999999999888663         46777532                    


Q ss_pred             CCCHHHHHHHhhhhhhhhhhcCCChhhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 018397          185 PYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHH  264 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~  264 (356)
                          +++.+..+. +                 ..+.+++|+.|+++|+.||.++++||+++|     ++.||+||++||.
T Consensus        49 ----~~l~~~~~~-l-----------------~d~~~~rRa~Hvv~En~Rv~~a~~al~~~d-----~~~~G~lm~~Sh~  101 (183)
T d1piea2          49 ----EEFDANTDL-I-----------------GDETLIKRARHAVYENNRTKIAQKAFVAGN-----LTKFGELLNASHA  101 (183)
T ss_dssp             ----HHHHHTGGG-T-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHH
T ss_pred             ----HHHHHHHhh-c-----------------CCHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----HHHHHHHHHHHHH
Confidence                344443221 1                 012468999999999999999999999875     9999999999999


Q ss_pred             HhhhhcCCCChHHHHHHHHHHh-CCCceeEEeccCCcceEEEEecCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEE
Q 018397          265 SCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVF  343 (356)
Q Consensus       265 ~lr~~~~vs~peld~lv~~a~~-~Ga~GaklsGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (356)
                      +++++|++|||++|.|++.+++ .|++|+||||+|||||+++|++.+.++++.++|.+.|+++++         .++.+|
T Consensus       102 sl~~~~evs~~elD~Lv~~a~~~~G~~GaRmtGgGfGGcvialv~~~~~~~~~~~i~~~y~~~~g---------~~~~~~  172 (183)
T d1piea2         102 SLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEVVG---------YPASFY  172 (183)
T ss_dssp             HHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHHS---------SCCEEE
T ss_pred             HHHHHhcCCCchHHHHHHHHHHhCCCeEeeccccCCCceEEEEecHHHHHHHHHHHHHHHHHhhC---------CCCcEE
Confidence            9999999999999999999986 599999999999999999999999999999999999988775         577899


Q ss_pred             EeecCCceeec
Q 018397          344 ASKPSSGAAKF  354 (356)
Q Consensus       344 ~~~p~~Ga~v~  354 (356)
                      +++|++||+++
T Consensus       173 ~~~~~~Ga~~i  183 (183)
T d1piea2         173 VAQIGSGSTKL  183 (183)
T ss_dssp             ECCBCCCSBCC
T ss_pred             EEecCCCceeC
Confidence            99999999975
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure