Citrus Sinensis ID: 018424

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MALCFVLNLKSSRVCFLGNVLNDLQNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELKTKRSSRRKNSSSFENKDGNLRSSGSTSGVSNSKAVDNSAFSINHEESGTSRRKQNKNIPRQQTSLKQRFFSSNFRNHGTGRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFPPFQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVLPAFAHFGNLGQNHLELDKFSLRHGDKTL
Secondary Structure (PSIPRED)
ccEEEEEEcccccEEEEccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccEEEEHHEEEEEccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHccccccccc
Coil and Loop (DISEMBL)
MALCFVLNLKSSRVCFLGNVLNDLQnswavegsktggkgLKSISNELASAINDGLYFFEQELKTkrssrrknsssfenkdgnlrssgstsgvsnskavdnsafsinheesgtsrrkqnkniprqqtSLKQRFfssnfrnhgtgrnshgfisesppsnsvgyffgstppenhgprpsklsvsphgtlssgsppvgsmpksfppfqhpshqlleenGFRQQKYLKFRKRCLNERkklgigcseeMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFyhkgnlygleKYWYVLpafahfgnlgqnhleldkfslrhgdktl
Flexible Loop (DISEMBL)
MALCFVLNLKSSRVCFLGNVLNDLQNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELktkrssrrknsssfenkdgnlrssgstsgvsnskavdnsafsinheesgtsrrkqnkniprqqtslkqrffSSNFRNHGTGRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFPPFQHPSHQLLEENGFRQQKYLKFRKRCLNERkklgigcseemNTLYRFWSYFLREMFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVLPAFAHFGNLGQNHLELDKfslrhgdktl
Low Complexity Region (SEG)
MALCFVLNLKSSRVCFLGNVLNDLQNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELktkrssrrknsssFENKDGNLRssgstsgvsnsKAVDNSAFSINHEESGTSRRKQNKNIPRQQTSLKQRFFSSNFRNHGTGRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFPPFQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVLPAFAHFGNLGQNHLELDKFSLRHGDKTL
Disordered region (IsUnstruct)
**LCFVLNLKSSRVCFLGNVLNDLQNSWAVEGS******LKSISNELASAINDGLYFFE************************************************************************************************************************************************************FRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVLPAFAHFGNLGQNHLELDK**********
Disordered Region (DISOPRED)
*ALCFV*NLKSSRVCFLGNVLND***********************LASAINDGLYFFEQ***********************************************************************************************************************************************************FRQQKYLKFRKRC***************NTLYRFWSYFLREMFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVLPAFAH*********ELDKFSLRHGDKTL
Disordered Region (DISEMBL)
MALCFVLNLKSSRVCFLGNVLNDLQNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELK*********************************AVDNSAFSIN****************RQQTSLKQRFFSSNFRNHGTGRNSHGFISESPPSNSVGYFFGSTP***************************SMPKSFPPFQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVLPAFAHFGNLGQNHLELDKFSLRHGDKTL
Disordered Region (DISPRO)
MALCFVLNLKSSRVCFLGNVLNDLQN***************SISNELASAINDGLYFFEQELKTKR***************************************************************************************PPSNSVGYF*G**********************************SFPPFQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVLPAFAHFGNLG*N*LE****SL*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALCFVLNLKSSRVCFLGNVLNDLQNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELKTKRSSRRKNSSSFENKDGNLRSSGSTSGVSNSKAVDNSAFSINHEESGTSRRKQNKNIPRQQTSLKQRFFSSNFRNHGTGRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFPPFQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVLPAFAHFGNLGQNHLELDKFSLRHGDKTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
Q6ZQ58	1072	La-related protein 1 OS=M	yes	no	0.808	0.268	0.387	2e-53
Q6PKG0	1096	La-related protein 1 OS=H	yes	no	0.480	0.156	0.565	1e-51
Q659C4	914	La-related protein 1B OS=	no	no	0.466	0.181	0.554	7e-49
Q9VAW5	1673	La-related protein OS=Dro	no	no	0.778	0.165	0.385	2e-47

>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2

 Score =  209 bits (533), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/348 (38%), Positives = 184/348 (52%), Gaps = 60/348 (17%)

Query: 32  GSKTGGKGLKS-ISNELASAINDGLYFFEQELKTKR-----SSRRKNSSSFENKDGNLRS 85
           G +TG    ++ +S ELA  INDGL+++EQ+L T++     S  ++   +F  K  N+ S
Sbjct: 636 GDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWTEKFEPEYSQIKQEVENF--KKVNMIS 693

Query: 86  SGSTSGVSNSKAVDNS---------------------------------AFSINHEESGT 112
                 ++    VD +                                 +      ES  
Sbjct: 694 REQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPN 753

Query: 113 SRRKQNKNIPR----QQTSLKQRFFS----SNFRNHGTGRNSHGFISESPPSNS-VGYFF 163
            R  +    PR    + +S   RF+         +    R      S +PP  S VG+  
Sbjct: 754 YRNARTPRTPRTPQLKDSSQTPRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVM 813

Query: 164 GSTPPENHGPRPSKLSVSPHGTLSSGSPPVGS---MPKSFPPFQHPSHQLLEENGFRQQK 220
            S     H PR + +S SP    S G+P VGS    P+S P FQHPSH+LL+ENGF Q  
Sbjct: 814 DS---REHRPRTASISSSP----SEGTPAVGSYGCTPQSLPKFQHPSHELLKENGFTQHV 866

Query: 221 YLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAAASYNY 280
           Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F   MY EF++ ALEDA   Y Y
Sbjct: 867 YHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRY 926

Query: 281 GIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVL 328
           G+ECLFR+YSYGLEK+ R D++KDF++ T+  Y  G LYGLEK+W  L
Sbjct: 927 GLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFL 974

Mus musculus (taxid: 10090)

>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2

 Score =  204 bits (518), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/182 (56%), Positives = 129/182 (70%), Gaps = 11/182 (6%)

Query: 151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGS---MPKSFPPFQHP 206
           S +PP  S VG+   S     H PR + +S SP    S G+P VGS    P+S P FQHP
Sbjct: 823 SSNPPLESHVGWVMDS---REHRPRTASISSSP----SEGTPTVGSYGCTPQSLPKFQHP 875

Query: 207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
           SH+LL+ENGF Q  Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F   MY EF
Sbjct: 876 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 935

Query: 267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
           ++ ALEDA   Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+  Y  G LYGLEK+W 
Sbjct: 936 KQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWA 995

Query: 327 VL 328
            L
Sbjct: 996 FL 997

Homo sapiens (taxid: 9606)

>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2

 Score =  194 bits (494), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 124/173 (71%), Gaps = 7/173 (4%)

Query: 159 VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGS---MPKSFPPFQHPSHQLLEENG 215
           VG+   S    + GP  S +S S + + S G+P  GS    P SFP FQHPSH+LL+ENG
Sbjct: 651 VGWVMDS---RDRGPGTSSVSTS-NASPSEGAPLAGSYGCTPHSFPKFQHPSHELLKENG 706

Query: 216 FRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAA 275
           F QQ Y K+R+RCL+ERK+LGIG S+EMNTL+RFWS+FLR+ F   MY EF++ A EDA 
Sbjct: 707 FTQQVYHKYRRRCLSERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFRQLAWEDAK 766

Query: 276 ASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVL 328
            +Y YG+ECLFRFYSYGLEK+ R ++++DF++ T   Y  G LYGLEK+W  L
Sbjct: 767 ENYRYGLECLFRFYSYGLEKKFRREIFQDFQEETKKDYESGQLYGLEKFWAYL 819

Homo sapiens (taxid: 9606)

>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 163/301 (54%), Gaps = 24/301 (7%)

Query: 43   ISNELASAINDGLYFFEQEL--KTKRSSRRKNSSSFENKD-GNLRSSGSTSGVSNSKAVD 99
            I+ +L + INDGL  +E++L   T   +  K  +     D   L    + S +       
Sbjct: 1163 ITQDLENIINDGLVNYEEDLWTTTNVVADYKTVNVISQADFEKLAGGRNKSVLPPQVVPP 1222

Query: 100  NSAFSINHEESGTSRRKQNKNIPRQQTSLKQRFFS---SNFRNHGTGRNSHGFISESPPS 156
               F  + +E+       N  +     S + RF++   S+  +  T R      + +PP 
Sbjct: 1223 PPPFEEDLDETLVGDTTLNSTLNNTLKSRRARFYAAPNSHSIDPRTPRKRKLRHTANPPV 1282

Query: 157  NS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGS--------MPKSFPPFQHPS 207
             + VG+   +     H PR + +  S      +G+ P  S        +P+S P FQHPS
Sbjct: 1283 EAHVGWLLDTV---EHRPRTTSMGSS------AGTSPTASSYGSFGSSVPQSLPVFQHPS 1333

Query: 208  HQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQ 267
            H LL+EN F QQ Y K+  RCL ER++LG G S+EMNTLYRFWS+FLRE F  SMYNEF+
Sbjct: 1334 HALLKENNFTQQAYHKYHSRCLKERRRLGYGQSQEMNTLYRFWSFFLRENFNKSMYNEFR 1393

Query: 268  KFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYV 327
              ALEDA   + YG+ECLFRF+SYGLEK+ R ++Y+DF+  T+  Y  G LYGLEK+W  
Sbjct: 1394 SLALEDAGNGFRYGLECLFRFFSYGLEKKFRPNIYQDFQDETIADYETGQLYGLEKFWAF 1453

Query: 328  L 328
            L
Sbjct: 1454 L 1454

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
296083998	841	unnamed protein product [Vitis vinifera]	0.896	0.379	0.728	1e-130
359479076	903	PREDICTED: uncharacterized protein LOC10	0.845	0.333	0.773	1e-129
255557168	867	lupus la ribonucleoprotein, putative [Ri	0.845	0.347	0.755	1e-128
356554253	926	PREDICTED: la-related protein 1-like [Gl	0.884	0.340	0.699	1e-125
356499283	864	PREDICTED: la-related protein 1-like [Gl	0.839	0.346	0.734	1e-124
449463867	881	PREDICTED: la-related protein 1-like [Cu	0.896	0.362	0.661	1e-116
357493683	911	La-related protein [Medicago truncatula]	0.825	0.322	0.663	1e-114
449516892	881	PREDICTED: LOW QUALITY PROTEIN: la-relat	0.896	0.362	0.655	1e-114
297812297	838	La domain-containing protein [Arabidopsi	0.862	0.366	0.638	1e-106
18420415	826	LA RNA-binding protein [Arabidopsis thal	0.865	0.372	0.637	1e-106

>gi|296083998|emb|CBI24386.3| unnamed protein product [Vitis vinifera]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/332 (72%), Positives = 271/332 (81%), Gaps = 13/332 (3%)

Query: 25  QNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELKTKRSSRRKNSSSFENKDGNLR 84
           QNS   EGS  G +  KSISNELASAINDGL+F+EQELKTK S+ RKNS SFEN+DG  R
Sbjct: 488 QNSRTGEGSGNGAQESKSISNELASAINDGLFFYEQELKTKGSNCRKNSFSFENRDGISR 547

Query: 85  SSGSTSGVSNSKAVDNSAFSINHEESGT--SRRKQNKNIPRQQ-TSLKQRFFSSNFRNHG 141
           SS    G+ N+K  +NS  S   EE G   SRRKQNK  P+QQ +S KQRFF+SNFRNHG
Sbjct: 548 SSSIVPGLVNAKTGENSIGSSGCEEPGNCNSRRKQNKGFPKQQASSHKQRFFTSNFRNHG 607

Query: 142 TGRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFP 201
           +GRNS G ISESPPSNSVG+FFGSTPPENHGPR SKL +SP G+LS  SPPVGSMPKSFP
Sbjct: 608 SGRNSLGIISESPPSNSVGFFFGSTPPENHGPRSSKLCISPRGSLSGSSPPVGSMPKSFP 667

Query: 202 PFQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPS 261
           PFQHPSHQLLEENGF+QQKYLK++KRCL++RKKLGIGCSEEMNTLYRFWSYFLR+MF  S
Sbjct: 668 PFQHPSHQLLEENGFKQQKYLKYQKRCLSDRKKLGIGCSEEMNTLYRFWSYFLRDMFNHS 727

Query: 262 MYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGL 321
           MY EF+KFALEDAAA+YNYGIECLFRFYSYGLEKE REDLY+DFEQLT+DFYHKGNLYGL
Sbjct: 728 MYKEFRKFALEDAAANYNYGIECLFRFYSYGLEKEFREDLYEDFEQLTIDFYHKGNLYGL 787

Query: 322 EKYWYVLPAFAHFGNLG------QNHLELDKF 347
           EKYW    AF H+  +       + H ELD+ 
Sbjct: 788 EKYW----AFHHYRGVDNQKPAPKKHPELDQL 815

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479076|ref|XP_002272083.2| PREDICTED: uncharacterized protein LOC100254731 [Vitis vinifera]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/304 (77%), Positives = 260/304 (85%), Gaps = 3/304 (0%)

Query: 25  QNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELKTKRSSRRKNSSSFENKDGNLR 84
           QNS   EGS  G +  KSISNELASAINDGL+F+EQELKTK S+ RKNS SFEN+DG  R
Sbjct: 600 QNSRTGEGSGNGAQESKSISNELASAINDGLFFYEQELKTKGSNCRKNSFSFENRDGISR 659

Query: 85  SSGSTSGVSNSKAVDNSAFSINHEESGT--SRRKQNKNIPRQQ-TSLKQRFFSSNFRNHG 141
           SS    G+ N+K  +NS  S   EE G   SRRKQNK  P+QQ +S KQRFF+SNFRNHG
Sbjct: 660 SSSIVPGLVNAKTGENSIGSSGCEEPGNCNSRRKQNKGFPKQQASSHKQRFFTSNFRNHG 719

Query: 142 TGRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFP 201
           +GRNS G ISESPPSNSVG+FFGSTPPENHGPR SKL +SP G+LS  SPPVGSMPKSFP
Sbjct: 720 SGRNSLGIISESPPSNSVGFFFGSTPPENHGPRSSKLCISPRGSLSGSSPPVGSMPKSFP 779

Query: 202 PFQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPS 261
           PFQHPSHQLLEENGF+QQKYLK++KRCL++RKKLGIGCSEEMNTLYRFWSYFLR+MF  S
Sbjct: 780 PFQHPSHQLLEENGFKQQKYLKYQKRCLSDRKKLGIGCSEEMNTLYRFWSYFLRDMFNHS 839

Query: 262 MYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGL 321
           MY EF+KFALEDAAA+YNYGIECLFRFYSYGLEKE REDLY+DFEQLT+DFYHKGNLYGL
Sbjct: 840 MYKEFRKFALEDAAANYNYGIECLFRFYSYGLEKEFREDLYEDFEQLTIDFYHKGNLYGL 899

Query: 322 EKYW 325
           EKYW
Sbjct: 900 EKYW 903

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557168|ref|XP_002519615.1| lupus la ribonucleoprotein, putative [Ricinus communis] gi|223541205|gb|EEF42760.1| lupus la ribonucleoprotein, putative [Ricinus communis]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/303 (75%), Positives = 256/303 (84%), Gaps = 2/303 (0%)

Query: 25  QNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELKTKRSSRRKNSSSFENKDGNLR 84
           QNS A EG KTG K  KSIS E A AINDGLYF+EQELKTKR +RRK+SS  EN+DGNLR
Sbjct: 565 QNSRAGEGIKTGSKESKSISKEQAFAINDGLYFYEQELKTKRCNRRKSSSGVENRDGNLR 624

Query: 85  SSGSTSGVSNSKAVDNSAFSINHEESGTSR--RKQNKNIPRQQTSLKQRFFSSNFRNHGT 142
            + S  G+SNSK  ++S  S   EESG+S   R+QNK+  + Q+S KQRFFS NFRNHGT
Sbjct: 625 FTNSALGMSNSKVGESSIGSGGQEESGSSNNLRRQNKSFSKPQSSHKQRFFSCNFRNHGT 684

Query: 143 GRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFPP 202
           GRNS G ISESPPSNSVG+FF STPPE H PR SKLS SPH TLS  SPPVGSMPKSFP 
Sbjct: 685 GRNSFGIISESPPSNSVGFFFSSTPPETHNPRSSKLSASPHSTLSGSSPPVGSMPKSFPL 744

Query: 203 FQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSM 262
           FQHPSHQLLEENGF+QQKYLKF KRCL++RKK+GIGCSEEMNTLYRFWSYFLR+MF+PSM
Sbjct: 745 FQHPSHQLLEENGFKQQKYLKFHKRCLSDRKKMGIGCSEEMNTLYRFWSYFLRDMFVPSM 804

Query: 263 YNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLE 322
           YNEF KFA+EDAAA+YNYG+ECLFRFYSYGLE + REDLYKDFE+LTL+FY KGN+YGLE
Sbjct: 805 YNEFLKFAMEDAAANYNYGVECLFRFYSYGLESKFREDLYKDFEELTLEFYRKGNIYGLE 864

Query: 323 KYW 325
           KYW
Sbjct: 865 KYW 867

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554253|ref|XP_003545463.1| PREDICTED: la-related protein 1-like [Glycine max]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/346 (69%), Positives = 272/346 (78%), Gaps = 31/346 (8%)

Query: 25  QNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELKTKRSSRRKNSSSFENKDGNLR 84
           QN    + S+ GGK   SISNELASAINDGLYF+EQELK +RS+RRKN+S  +++D N++
Sbjct: 565 QNGDPKQRSRGGGKESISISNELASAINDGLYFYEQELKHRRSNRRKNNS--DSRDQNIK 622

Query: 85  SSGSTSGVSNSKAVDNSAFSINHEESGT--SRRKQNKNIPRQQTSLKQRFFSSNFRNHGT 142
           S    SG SN KAV+N   +   EESG+  SRRKQ K   +Q +SLKQRFFSSNFRNHGT
Sbjct: 623 SPSRNSGASNIKAVENIGGNCV-EESGSYNSRRKQ-KVFHKQPSSLKQRFFSSNFRNHGT 680

Query: 143 GRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLS--------------- 187
           GRNSHG ISESPPSNSVG+FF STPPENHG +PSKLS SPHG  S               
Sbjct: 681 GRNSHGIISESPPSNSVGFFFASTPPENHGFKPSKLSSSPHGGFSGSPRGGFAGSPHGGF 740

Query: 188 SGSPPVGSMPKSFPPFQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLY 247
           +GSPPVGSMPKSFP FQHPSHQLLEENGF+QQKYLK+ KRCLN+RKKLGIGCSEEMNTLY
Sbjct: 741 AGSPPVGSMPKSFPLFQHPSHQLLEENGFKQQKYLKYHKRCLNDRKKLGIGCSEEMNTLY 800

Query: 248 RFWSYFLREMFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQ 307
           RFWSYFLR+MF+PSMYNEF+K A EDAAA+YNYGIECLFRFYSYGLEKE R+DLYKDFEQ
Sbjct: 801 RFWSYFLRDMFVPSMYNEFKKLAKEDAAANYNYGIECLFRFYSYGLEKEFRDDLYKDFEQ 860

Query: 308 LTLDFYHKGNLYGLEKYWYVLPAFAHFGNL-GQ-----NHLELDKF 347
           LTLDFYHKGNLYGLEKYW    AF H+  + GQ      H ELD+ 
Sbjct: 861 LTLDFYHKGNLYGLEKYW----AFHHYRKVRGQKEPLNKHPELDRL 902

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499283|ref|XP_003518471.1| PREDICTED: la-related protein 1-like [Glycine max]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/301 (73%), Positives = 253/301 (84%), Gaps = 2/301 (0%)

Query: 25  QNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELKTKRSSRRKNSSSFENKDGNLR 84
           QN    +GS+ G K   SISNELASAINDGLYF+EQELK +RS+RRKN+S  +++D N++
Sbjct: 566 QNGDPKQGSRGGVKESISISNELASAINDGLYFYEQELKHRRSNRRKNNS--DSRDRNIK 623

Query: 85  SSGSTSGVSNSKAVDNSAFSINHEESGTSRRKQNKNIPRQQTSLKQRFFSSNFRNHGTGR 144
           S    SG SN K  ++   +   E    + R+++K   +Q +SLKQRFFSSNF+NHGTGR
Sbjct: 624 SPSHNSGASNIKVFESIGGNSVEESGSNNSRRKHKVFHKQPSSLKQRFFSSNFKNHGTGR 683

Query: 145 NSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFPPFQ 204
           NS+G ISESPPSNSVG+FF STPPENHG +PSKLS SPHG LS  SPPVGSMPKSFPPFQ
Sbjct: 684 NSNGIISESPPSNSVGFFFASTPPENHGFKPSKLSSSPHGGLSGSSPPVGSMPKSFPPFQ 743

Query: 205 HPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYN 264
           HPSHQLLEENGF+QQKYLK+ KRCLN+RKKLGIGCSEEMNTLYRFWSYFLR+MF+PSMYN
Sbjct: 744 HPSHQLLEENGFKQQKYLKYHKRCLNDRKKLGIGCSEEMNTLYRFWSYFLRDMFVPSMYN 803

Query: 265 EFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKY 324
           EF+K A EDAAA+YNYGIECLFRFYSYGLEKE R+DLYKDFEQ TLDFYHKGNLYGLEKY
Sbjct: 804 EFKKLAKEDAAANYNYGIECLFRFYSYGLEKEFRDDLYKDFEQTTLDFYHKGNLYGLEKY 863

Query: 325 W 325
           W
Sbjct: 864 W 864

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463867|ref|XP_004149652.1| PREDICTED: la-related protein 1-like [Cucumis sativus]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/331 (66%), Positives = 259/331 (78%), Gaps = 12/331 (3%)

Query: 25  QNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELKTKRSSRRKNSSSFENKDGNLR 84
           QN    + S +GGK  KSIS ELAS INDGLYF+EQ L+ KRS+R+K+  + EN++G  R
Sbjct: 530 QNRAIEKRSTSGGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSR 589

Query: 85  SSGSTSGVSNSKAVDNSAFSINHEESGTS--RRKQNKNIPRQQTSLKQRFFSSNFRNHGT 142
            S S +G + SK  +NSA     +E G +  R+KQ K  P+QQ+S KQRFFSSNFRNHGT
Sbjct: 590 LSSSATGSARSKPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGT 649

Query: 143 GRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFPP 202
            RNS G ++ESPPSNSVG+FFGSTPP++   RPSKLSVSPHG     SPPVGS+PKSFPP
Sbjct: 650 SRNSLGIVAESPPSNSVGFFFGSTPPDSTSSRPSKLSVSPHGNFLGNSPPVGSLPKSFPP 709

Query: 203 FQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSM 262
           FQHPSHQLLEENGF+QQKYLKF K+CL++RKKLGIGCSEEMNTLYRFWSYFLR+MF+ SM
Sbjct: 710 FQHPSHQLLEENGFKQQKYLKFYKKCLSDRKKLGIGCSEEMNTLYRFWSYFLRDMFVDSM 769

Query: 263 YNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLE 322
           YN+F+K+ALEDAA++YNYG+ECLFRFYSYGLEKE RE LY DFEQLTL+F+ KGNLYGLE
Sbjct: 770 YNDFRKYALEDAASNYNYGMECLFRFYSYGLEKEFREVLYSDFEQLTLEFFQKGNLYGLE 829

Query: 323 KYWYVLPAFAHFGNLG------QNHLELDKF 347
           KYW    AF H+          + H ELDK 
Sbjct: 830 KYW----AFHHYRRQRDQKEPLRKHPELDKL 856

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493683|ref|XP_003617130.1| La-related protein [Medicago truncatula] gi|355518465|gb|AET00089.1| La-related protein [Medicago truncatula]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/321 (66%), Positives = 244/321 (76%), Gaps = 27/321 (8%)

Query: 35  TGGKGLKSISNELASAINDGLYFFEQELK-TKRSSRRKNSSSFENKDGNLRSSGSTSGVS 93
           +G K  K ISNELASAINDGLYF+EQEL+  +RS+RRK                   G S
Sbjct: 580 SGSKESKPISNELASAINDGLYFYEQELRHNRRSNRRKTL---------------LQGAS 624

Query: 94  NSKAVDNSAFSINHEESGTSRRKQNK-NIPRQQTSLKQRFFSSNFRNHGTGRNSHGFISE 152
           N K  +N+  S+    S   RRKQ   +  +QQ+SLKQRFFS+NFRNHGTGRNSHG ISE
Sbjct: 625 NIKTGENAVGSLEEPGSNNPRRKQKGFHNHKQQSSLKQRFFSNNFRNHGTGRNSHGVISE 684

Query: 153 SPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFPPFQHPSHQLLE 212
           SPPSNSVG+FF STPPEN     SKL  SPHG +S  SPPVGSMPKSFPPFQHPSHQLLE
Sbjct: 685 SPPSNSVGFFFSSTPPENQSLMLSKLGSSPHGGVSGSSPPVGSMPKSFPPFQHPSHQLLE 744

Query: 213 ENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALE 272
           ENGF+QQKYLK+ K+CLN+RKKLGIGCSEEMNTLYRFW YFLR+MF+PSMY+EF+K A+E
Sbjct: 745 ENGFKQQKYLKYHKKCLNDRKKLGIGCSEEMNTLYRFWCYFLRDMFVPSMYDEFKKLAME 804

Query: 273 DAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVLPAFA 332
           DAAA+Y YG+ECLFRFYSYGLEKE R+DLYKDFEQLTLD+YHKGNLYGLEKYW    AF 
Sbjct: 805 DAAANYYYGMECLFRFYSYGLEKEFRDDLYKDFEQLTLDYYHKGNLYGLEKYW----AFH 860

Query: 333 HFGNLG------QNHLELDKF 347
           H+  +       + H ELD+ 
Sbjct: 861 HYRKMRNQKEPLKKHPELDRL 881

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516892|ref|XP_004165480.1| PREDICTED: LOW QUALITY PROTEIN: la-related protein 1-like [Cucumis sativus]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/331 (65%), Positives = 257/331 (77%), Gaps = 12/331 (3%)

Query: 25  QNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELKTKRSSRRKNSSSFENKDGNLR 84
           QN    + S +GGK  KSIS ELAS INDGLYF+EQ  + KRS+R+K+  + EN++G  R
Sbjct: 530 QNRAIEKRSTSGGKESKSISKELASTINDGLYFYEQVERKKRSNRKKSKCNSENREGTSR 589

Query: 85  SSGSTSGVSNSKAVDNSAFSINHEESGTS--RRKQNKNIPRQQTSLKQRFFSSNFRNHGT 142
            S S +G + SK  +NSA     +E G +  R+KQ K  P+QQ+S KQRFFSSNFRNHGT
Sbjct: 590 LSSSATGSARSKPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGT 649

Query: 143 GRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFPP 202
            RNS G ++ESPPSNSV +FFGSTPP++   RPSKLSVSPHG     SPPVGS+PKSFPP
Sbjct: 650 SRNSLGIVAESPPSNSVXFFFGSTPPDSTSSRPSKLSVSPHGNFLGNSPPVGSLPKSFPP 709

Query: 203 FQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSM 262
           FQHPSHQLLEENGF+QQKYLKF K+CL++RKKLGIGCSEEMNTLYRFWSYFLR+MF+ SM
Sbjct: 710 FQHPSHQLLEENGFKQQKYLKFYKKCLSDRKKLGIGCSEEMNTLYRFWSYFLRDMFVDSM 769

Query: 263 YNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLE 322
           YN+F+K+ALEDAA++YNYG+ECLFRFYSYGLEKE RE LY DFEQLTL+F+ KGNLYGLE
Sbjct: 770 YNDFRKYALEDAASNYNYGMECLFRFYSYGLEKEFREVLYSDFEQLTLEFFQKGNLYGLE 829

Query: 323 KYWYVLPAFAHFGNLG------QNHLELDKF 347
           KYW    AF H+          + H ELDK 
Sbjct: 830 KYW----AFHHYRRQRDQKEPLRKHPELDKL 856

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812297|ref|XP_002874032.1| La domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319869|gb|EFH50291.1| La domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/329 (63%), Positives = 244/329 (74%), Gaps = 22/329 (6%)

Query: 25  QNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELKTKRSSRRKNSSSFENKDGNLR 84
           QNS   +G+  G    K+I  ELAS INDGLY+FEQELK  RS RRKN+S  + KDG ++
Sbjct: 500 QNSGKSDGTGIGVTKAKNIPKELASTINDGLYYFEQELKKNRSGRRKNNSHLDTKDGKIK 559

Query: 85  SSGSTSGVS-NSKAVDNSAFSINHEESGT--SRRKQNKNIPRQQTSLKQRFFSSNFRNHG 141
           S     GV  N+K  +NSA +   EE GT  SRRKQNK   +  T+  +RFFSSN RNHG
Sbjct: 560 S-----GVGLNTKLGENSAANEGGEEHGTITSRRKQNKGTHKHHTAHARRFFSSNIRNHG 614

Query: 142 TGRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFP 201
               S         S+S+G+FFGSTPP++HGPR SKLS SP  TLS  SPPVGS+PKSFP
Sbjct: 615 NISESPP-------SSSIGFFFGSTPPDSHGPRLSKLSSSPQCTLSGSSPPVGSLPKSFP 667

Query: 202 PFQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPS 261
           PFQHPSHQLLEENGF+Q+KYLK+RKRCLNERKKLG GCSEEMN LYRFWSYFLR+ F+ S
Sbjct: 668 PFQHPSHQLLEENGFKQEKYLKYRKRCLNERKKLGSGCSEEMNHLYRFWSYFLRDTFVLS 727

Query: 262 MYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGL 321
           MY++FQKFALEDAA +YNYG+ECLFRFYSYGLEK   EDLYKDFE+L+LDFYHKGNLYGL
Sbjct: 728 MYDDFQKFALEDAAGNYNYGLECLFRFYSYGLEKHFDEDLYKDFEKLSLDFYHKGNLYGL 787

Query: 322 EKYWYVLPAFAHFGNLGQ---NHLELDKF 347
           EKYW    AF H+    +    H EL+K 
Sbjct: 788 EKYW----AFHHYRGKKEPITKHPELEKL 812

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420415|ref|NP_568409.1| LA RNA-binding protein [Arabidopsis thaliana] gi|15450527|gb|AAK96556.1| AT5g21160/T10F18_190 [Arabidopsis thaliana] gi|22655032|gb|AAM98107.1| At5g21160/T10F18_190 [Arabidopsis thaliana] gi|29294066|gb|AAO73903.1| proline-rich protein family [Arabidopsis thaliana] gi|332005558|gb|AED92941.1| LA RNA-binding protein [Arabidopsis thaliana]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/328 (63%), Positives = 246/328 (75%), Gaps = 20/328 (6%)

Query: 25  QNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELKTKRSSRRKNSSSFENKDGNLR 84
           QNS   +G+  GG   K+I  ELAS INDGLY+FEQELK KRS RRKN+S  + KDG ++
Sbjct: 488 QNSGKSDGAGIGGTEAKNIPKELASTINDGLYYFEQELKKKRSGRRKNNSHLDTKDGKIK 547

Query: 85  SSGSTSGVSNSKAVDNSAFSINHEESG--TSRRKQNKNIPRQQTSLKQRFFSSNFRNHGT 142
           S     G+ N+K  +NSA +   EE G  TSRRKQNK   +  T+  +RFFSSN RN+G 
Sbjct: 548 SG---EGL-NTKLGENSAANDGGEEHGIITSRRKQNKGTHKHHTAHARRFFSSNIRNNGN 603

Query: 143 GRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFPP 202
              S         S+S+G+FFGSTPP++HGPR SKLS SP  TLS  SPPVGS+PKSFPP
Sbjct: 604 ISESPP-------SSSIGFFFGSTPPDSHGPRLSKLSSSPQCTLSGSSPPVGSLPKSFPP 656

Query: 203 FQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSM 262
           FQHPSHQLLEENGF+Q+KYLK+RKRCLNERKKLG GCSEEMN LYRFWSYFLR+ F+ SM
Sbjct: 657 FQHPSHQLLEENGFKQEKYLKYRKRCLNERKKLGSGCSEEMNHLYRFWSYFLRDTFVLSM 716

Query: 263 YNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLE 322
           Y++FQKFALEDAA +Y+YG+ECLFRFYSYGLEK   EDLYKDFE+L+LDFYHKGNLYGLE
Sbjct: 717 YDDFQKFALEDAAGNYDYGLECLFRFYSYGLEKHFDEDLYKDFEKLSLDFYHKGNLYGLE 776

Query: 323 KYWYVLPAFAHFGNLGQ---NHLELDKF 347
           KYW    AF H+    +    H EL+K 
Sbjct: 777 KYW----AFHHYRGKEEPITKHPELEKL 800

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
UNIPROTKB|F1P339	927	LARP1 "Uncharacterized protein	0.511	0.196	0.530	6.3e-55
UNIPROTKB|F1MZU1	951	LARP1 "Uncharacterized protein	0.480	0.179	0.565	7.1e-55
RGD|1306683	1024	Larp1 "La ribonucleoprotein do	0.480	0.166	0.565	1.2e-54
MGI|MGI:1890165	1072	Larp1 "La ribonucleoprotein do	0.480	0.159	0.565	1.6e-54
UNIPROTKB|Q6PKG0	1096	LARP1 "La-related protein 1" [	0.480	0.156	0.565	1.8e-54
UNIPROTKB|Q659C4	914	LARP1B "La-related protein 1B"	0.488	0.190	0.543	4.1e-53
FB|FBgn0261618	1673	larp "La related protein" [Dro	0.792	0.168	0.385	1.9e-44
WB|WBGene00020097	1150	larp-1 [Caenorhabditis elegans	0.379	0.117	0.539	8.9e-33

UNIPROTKB|F1P339 LARP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 518 (187.4 bits), Expect = 6.3e-55, Sum P(2) = 6.3e-55
 Identities = 103/194 (53%), Positives = 132/194 (68%)

Query:   151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSM---PKSFPPFQHP 206
             S +PP    VG+   S     H PR + +S SP    S G+P VGS    P+S P FQHP
Sbjct:   653 SSNPPMECHVGWVMDS---REHRPRTASISSSP----SEGTPAVGSYGCTPQSLPKFQHP 705

Query:   207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
             SH+LL+ENGF Q  Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F   MY EF
Sbjct:   706 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 765

Query:   267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
             ++ A+ED    Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+  Y  G LYGLEK+W 
Sbjct:   766 KQLAVEDGKEGYRYGLECLFRYYSYGLEKKFRPDIFKDFQEETIKDYEAGQLYGLEKFWA 825

Query:   327 VLPAFAHFGNLGQN 340
              L  ++   NL  N
Sbjct:   826 FLK-YSKAKNLDIN 838

GO:0016239 "positive regulation of macroautophagy" evidence=IEA

UNIPROTKB|F1MZU1 LARP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 525 (189.9 bits), Expect = 7.1e-55, Sum P(2) = 7.1e-55
 Identities = 103/182 (56%), Positives = 129/182 (70%)

Query:   151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSM---PKSFPPFQHP 206
             S +PP  S VG+   S     H PR + +S SP    S G+P VGS    P+S P FQHP
Sbjct:   680 SSNPPLESHVGWVMDS---REHRPRTASISSSP----SEGTPAVGSYGCTPQSLPKFQHP 732

Query:   207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
             SH+LL+ENGF Q  Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F   MY EF
Sbjct:   733 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 792

Query:   267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
             ++ ALEDA   Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+  Y  G LYGLEK+W 
Sbjct:   793 KQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWA 852

Query:   327 VL 328
              L
Sbjct:   853 FL 854

GO:0016239 "positive regulation of macroautophagy" evidence=IEA

RGD|1306683 Larp1 "La ribonucleoprotein domain family, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 525 (189.9 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
 Identities = 103/182 (56%), Positives = 129/182 (70%)

Query:   151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSM---PKSFPPFQHP 206
             S +PP  S VG+   S     H PR + +S SP    S G+P VGS    P+S P FQHP
Sbjct:   752 SSNPPLESHVGWVMDS---REHRPRTASISSSP----SEGTPAVGSYGCTPQSLPKFQHP 804

Query:   207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
             SH+LL+ENGF Q  Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F   MY EF
Sbjct:   805 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 864

Query:   267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
             ++ ALEDA   Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+  Y  G LYGLEK+W 
Sbjct:   865 KQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWA 924

Query:   327 VL 328
              L
Sbjct:   925 FL 926

GO:0016239 "positive regulation of macroautophagy" evidence=ISO

MGI|MGI:1890165 Larp1 "La ribonucleoprotein domain family, member 1" [Mus musculus (taxid:10090)]

 Score = 525 (189.9 bits), Expect = 1.6e-54, Sum P(2) = 1.6e-54
 Identities = 103/182 (56%), Positives = 129/182 (70%)

Query:   151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSM---PKSFPPFQHP 206
             S +PP  S VG+   S     H PR + +S SP    S G+P VGS    P+S P FQHP
Sbjct:   800 SSNPPLESHVGWVMDS---REHRPRTASISSSP----SEGTPAVGSYGCTPQSLPKFQHP 852

Query:   207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
             SH+LL+ENGF Q  Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F   MY EF
Sbjct:   853 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 912

Query:   267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
             ++ ALEDA   Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+  Y  G LYGLEK+W 
Sbjct:   913 KQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWA 972

Query:   327 VL 328
              L
Sbjct:   973 FL 974

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISA

GO:0016239 "positive regulation of macroautophagy" evidence=ISO

UNIPROTKB|Q6PKG0 LARP1 "La-related protein 1" [Homo sapiens (taxid:9606)]

 Score = 525 (189.9 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 103/182 (56%), Positives = 129/182 (70%)

Query:   151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSM---PKSFPPFQHP 206
             S +PP  S VG+   S     H PR + +S SP    S G+P VGS    P+S P FQHP
Sbjct:   823 SSNPPLESHVGWVMDS---REHRPRTASISSSP----SEGTPTVGSYGCTPQSLPKFQHP 875

Query:   207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
             SH+LL+ENGF Q  Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F   MY EF
Sbjct:   876 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 935

Query:   267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
             ++ ALEDA   Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+  Y  G LYGLEK+W 
Sbjct:   936 KQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWA 995

Query:   327 VL 328
              L
Sbjct:   996 FL 997

GO:0003723 "RNA binding" evidence=IEA

GO:0016239 "positive regulation of macroautophagy" evidence=IMP

UNIPROTKB|Q659C4 LARP1B "La-related protein 1B" [Homo sapiens (taxid:9606)]

 Score = 504 (182.5 bits), Expect = 4.1e-53, Sum P(2) = 4.1e-53
 Identities = 99/182 (54%), Positives = 128/182 (70%)

Query:   151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSM---PKSFPPFQHP 206
             S +PP    VG+   S    + GP  S +S S + + S G+P  GS    P SFP FQHP
Sbjct:   642 STNPPLECHVGWVMDS---RDRGPGTSSVSTS-NASPSEGAPLAGSYGCTPHSFPKFQHP 697

Query:   207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
             SH+LL+ENGF QQ Y K+R+RCL+ERK+LGIG S+EMNTL+RFWS+FLR+ F   MY EF
Sbjct:   698 SHELLKENGFTQQVYHKYRRRCLSERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 757

Query:   267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
             ++ A EDA  +Y YG+ECLFRFYSYGLEK+ R ++++DF++ T   Y  G LYGLEK+W 
Sbjct:   758 RQLAWEDAKENYRYGLECLFRFYSYGLEKKFRREIFQDFQEETKKDYESGQLYGLEKFWA 817

Query:   327 VL 328
              L
Sbjct:   818 YL 819

GO:0003723 "RNA binding" evidence=IEA

FB|FBgn0261618 larp "La related protein" [Drosophila melanogaster (taxid:7227)]

 Score = 482 (174.7 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 114/296 (38%), Positives = 156/296 (52%)

Query:    43 ISNELASAINDGLYFFEQELXXXXXXXXXXXXX--FENKDGNLRXXXXXXXXXXXKAVDN 100
             I+ +L + INDGL  +E++L                   D               + V  
Sbjct:  1163 ITQDLENIINDGLVNYEEDLWTTTNVVADYKTVNVISQADFEKLAGGRNKSVLPPQVVPP 1222

Query:   101 SA-FSINHEESGTSRRKQNKNIPRQQTSLKQRFFSSNFRNHG----TGRNSHGFISESPP 155
                F  + +E+       N  +     S + RF+++   +H     T R      + +PP
Sbjct:  1223 PPPFEEDLDETLVGDTTLNSTLNNTLKSRRARFYAAP-NSHSIDPRTPRKRKLRHTANPP 1281

Query:   156 SNS-VGYFFGSTPPENHGPRPSKL--SVSPHGTLSSGSPPVGSMPKSFPPFQHPSHQLLE 212
               + VG+   +     H PR + +  S     T SS      S+P+S P FQHPSH LL+
Sbjct:  1282 VEAHVGWLLDTV---EHRPRTTSMGSSAGTSPTASSYGSFGSSVPQSLPVFQHPSHALLK 1338

Query:   213 ENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALE 272
             EN F QQ Y K+  RCL ER++LG G S+EMNTLYRFWS+FLRE F  SMYNEF+  ALE
Sbjct:  1339 ENNFTQQAYHKYHSRCLKERRRLGYGQSQEMNTLYRFWSFFLRENFNKSMYNEFRSLALE 1398

Query:   273 DAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVL 328
             DA   + YG+ECLFRF+SYGLEK+ R ++Y+DF+  T+  Y  G LYGLEK+W  L
Sbjct:  1399 DAGNGFRYGLECLFRFFSYGLEKKFRPNIYQDFQDETIADYETGQLYGLEKFWAFL 1454

GO:0005737 "cytoplasm" evidence=IDA

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0048102 "autophagic cell death" evidence=IEP

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0051225 "spindle assembly" evidence=IMP

GO:0007076 "mitotic chromosome condensation" evidence=IMP

GO:0051299 "centrosome separation" evidence=IMP

GO:0007053 "spindle assembly involved in male meiosis" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0007140 "male meiosis" evidence=IMP

GO:0000001 "mitochondrion inheritance" evidence=IMP

GO:0035186 "syncytial blastoderm mitotic cell cycle" evidence=IMP

WB|WBGene00020097 larp-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 359 (131.4 bits), Expect = 8.9e-33, Sum P(2) = 8.9e-33
 Identities = 75/139 (53%), Positives = 94/139 (67%)

Query:   192 PVG-SMPKSFPPFQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFW 250
             P+G +   S  P  HPS  LL+E+ F Q  Y  +R+ CL +RK LG  C+E MNTLYRFW
Sbjct:   977 PIGIAASSSQVPANHPSISLLQEDRFVQNVYSTWRQACLKQRKSLGYDCAE-MNTLYRFW 1035

Query:   251 SYFLREMFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDF-EQLT 309
             S+FLR+ F  +MY EF+K ALEDA     YGIE LFRFYSYGLEK+ R ++YK+F + +T
Sbjct:  1036 SFFLRDNFNRNMYEEFRKLALEDAEIGSRYGIEALFRFYSYGLEKKFRPEIYKNFMKDVT 1095

Query:   310 LDFYHKGNLYGLEKYWYVL 328
              D   KG LYGLEK +  L
Sbjct:  1096 TDV-QKGELYGLEKLFAFL 1113

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0034046 "poly(G) RNA binding" evidence=IDA

GO:0008266 "poly(U) RNA binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017429001 SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (913 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
smart00684	39	smart00684, DM15, Tandem repeat in fly CG14066 (La	5e-09
smart00684	39	smart00684, DM15, Tandem repeat in fly CG14066 (La	1e-08

>gnl|CDD|128927 smart00684, DM15, Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144

 Score = 50.8 bits (122), Expect = 5e-09
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 258 FIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEK 295
           F  +MY EF++  LED  +   Y + CL+RF+SYGL K
Sbjct: 2   FNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK 39

7. Unknown function. Length = 39

>gnl|CDD|128927 smart00684, DM15, Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 216 FRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLRE 256
           F Q  Y +FR+ CL +RK LG     E+N LYRFWSY LR+
Sbjct: 2   FNQNMYEEFRQLCLEDRKSLG---RYELNCLYRFWSYGLRK 39

7. Unknown function. Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
smart00684	39	DM15 Tandem repeat in fly CG14066 (La related prot	99.72
smart00684	39	DM15 Tandem repeat in fly CG14066 (La related prot	99.55
KOG2590	448	consensus RNA-binding protein LARP/SRO9 and relate	91.85

>smart00684 DM15 Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144

Probab=99.72  E-value=2.8e-18  Score=121.92  Aligned_cols=39  Identities=46%  Similarity=0.937  Sum_probs=37.7

Q ss_pred             hccHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhhhhh
Q 018424          257 MFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEK  295 (356)
Q Consensus       257 nFN~~MY~EFR~lALEDa~~g~~yGLEcLfRFYsygLe~  295 (356)
                      |||++||+|||++||||++.+++||||||||||||||++
T Consensus         1 ~Fn~~~Y~eFr~laled~~~~~~~gm~~LfRFwsy~L~~   39 (39)
T smart00684        1 NFNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK   39 (39)
T ss_pred             CchhhHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhccC
Confidence            799999999999999999999999999999999999985

7. Unknown function.

>smart00684 DM15 Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144

Probab=99.55  E-value=2.3e-15  Score=107.11  Aligned_cols=38  Identities=58%  Similarity=1.081  Sum_probs=36.4

Q ss_pred             CchhhhHHHHHHHHHHHhhcCCCCchhhhhhHHHhhHHHHh
Q 018424          216 FRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLRE  256 (356)
Q Consensus       216 F~qq~Y~kfr~~cL~qRk~~g~G~s~EMntLYRFWS~FLr~  256 (356)
                      |++++|++||+.||+||++.|   +++|++|||||||||++
T Consensus         2 Fn~~~Y~eFr~laled~~~~~---~~gm~~LfRFwsy~L~~   39 (39)
T smart00684        2 FNQNMYEEFRQLCLEDRKSLG---RYELNCLYRFWSYGLRK   39 (39)
T ss_pred             chhhHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHhhccC
Confidence            999999999999999999877   89999999999999985

7. Unknown function.

>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]

Probab=91.85  E-value=0.15  Score=52.94  Aligned_cols=55  Identities=18%  Similarity=0.122  Sum_probs=45.5

Q ss_pred             cccccceEEEecCCCC--CCCCCCCCcc-cccccHHHHHHhhhhhhhhHHhhhhhccCCc
Q 018424           14 VCFLGNVLNDLQNSWA--VEGSKTGGKG-LKSISNELASAINDGLYFFEQELKTKRSSRR   70 (356)
Q Consensus        14 ~~~inKllIVTQ~~~~--~kgdr~g~~~-~~kis~ELas~INDGLy~YEqdLw~k~~~~~   70 (356)
                      +.++++++||+|++..  +.+|++|... +++++.+|+.+|+|+  +|+|++|.......
T Consensus       350 ~~alr~s~ive~~~d~~~r~~~~~g~~~~ra~~~s~l~~~~~~~--~~~q~~~~e~~e~e  407 (448)
T KOG2590|consen  350 LAALRNSLIVEETGDLERRGGDRWGNHVSRAKESSPLDKAVDRR--DYWQDLLMEQNEDE  407 (448)
T ss_pred             HHHHhhhhhhhccchhhhcccccccceecccccCCcchhhhhhh--HHHHHHhhhccccc
Confidence            3467899999999664  4588898854 789999999999999  89999999875443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 41/288 (14%), Positives = 83/288 (28%), Gaps = 77/288 (26%)

Query: 92  VSNSKAVDNSAFSINHEESGTSRRKQNKNIPRQQTSLKQRFFSSNFRNHG-TGRNSHGFI 150
           V N+KA +  AF+++ +   T+R    K +    ++      S +  +   T       +
Sbjct: 253 VQNAKAWN--AFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 151 SESPPSNSVGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSMPKSFP----PFQHP 206
                   +       P E     P +LS+            +    +        ++H 
Sbjct: 308 L-----KYLDCRPQDLPREVLTTNPRRLSI------------IAESIRDGLATWDNWKHV 350

Query: 207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPS----- 261
           +            K     +  LN  +        E   ++   S F     IP+     
Sbjct: 351 NCD----------KLTTIIESSLNVLE------PAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 262 ------------MYNEFQKFAL-EDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQL 308
                       + N+  K++L E         I       S  LE + + +      + 
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI------PSIYLELKVKLENEYALHRS 448

Query: 309 TLDFYHKGNLY--------GLEKYWYVLPAFAHFGNLGQNHLELDKFS 348
            +D Y+    +         L++Y+Y      H  N+      +  F 
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPE-RMTLFR 494

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 8e-06
 Identities = 53/405 (13%), Positives = 103/405 (25%), Gaps = 137/405 (33%)

Query: 7   LNLKSSRVCFLGNVLNDLQNSWAVE----GSKTGGKGL-----KSISNELASAINDGLYF 57
           L  K    C L  VL ++QN+ A        K     L     K +++ L SA       
Sbjct: 238 LKSKPYENCLL--VLLNVQNAKAWNAFNLSCKI----LLTTRFKQVTDFL-SAATTTHIS 290

Query: 58  FEQELK--TKRSSRRKNSSSFENKDGNLRSSGSTSGVSNSKAVDNSAFSIN------HEE 109
            +      T    +       + +  +L              +  +   ++       + 
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE----------VLTTNPRRLSIIAESIRDG 340

Query: 110 SGTSRRKQNKNIPRQQTSLKQRFFSSNFRNHGTGRNSHGFISESPPSNSVGYF-----FG 164
             T    ++ N  +  T ++                    ++   P+     F     F 
Sbjct: 341 LATWDNWKHVNCDKLTTIIES------------------SLNVLEPAEYRKMFDRLSVF- 381

Query: 165 STPPENHGPRPSKLSVSPHGTLS---SGSPP--VGSMPKSFPPFQHPSHQ--LLEENGFR 217
              P +     + +   P   LS          V  +           H+  L+E+    
Sbjct: 382 ---PPS-----AHI---PTILLSLIWFDVIKSDVMVVVNKL-------HKYSLVEKQPKE 423

Query: 218 QQK-----YLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALE 272
                   YL+ + +  NE                      L    +   YN  + F  +
Sbjct: 424 STISIPSIYLELKVKLENEYA--------------------LHRSIVDH-YNIPKTFDSD 462

Query: 273 DAAASY--NYGIECLFRFYSYGLEKECREDLYKDFEQLTLDF-------YHKGNLYG--- 320
           D    Y   Y     +    + L+     +    F  + LDF        H    +    
Sbjct: 463 DLIPPYLDQY----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 321 --------LEKYW-YVLPAFAHFGNLGQNHLELDKFSLRHGDKTL 356
                   L+ Y  Y+      +  L      +  F  +  +  +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVN---AILDFLPKIEENLI 560

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00