Citrus Sinensis ID: 018428

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MKKSGAAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFRFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSPRLALSGMMEKQPDVANATEANGTFSDGSKTNPDEIVPPDADAETGNVHENDQHQDNI
Secondary Structure (PSIPRED)
cccccHHHHHHHHccHHHHccccccccccccccccccccHHHHHHHHHHHccccccccEEEEccEEEEEEEcHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccEEcccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHcccccccccccccccccccccccHHccccHHHHHHHHHHHcccccccEEEEcccEEEEEEHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccEEEEccccEEcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccHccccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHccccHHcccccccEcccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKKSGAAEKKRVRRSSAvvqngtrdpnsdtpprkqaAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKtlrpgkkklstwpahleifpeqvfsdndaFFAWTFEKGRPLWQTLLSFFWPVLTLAIClfpvyphrcKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGkrvwffpnILAEEATLRELFRfwpkkdeeekpKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVlewsprlalsgmmekqpdvanateangtfsdgsktnpdeivppdadaetgnvhendqhqdni
Flexible Loop (DISEMBL)
mkksgaaekkrvrrssavvqngtrdpnsdtpprkqaaKKDVFQLFAEkvrdhkdlesrWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANallsknllvrCDRVVKTlrpgkkklstwpahLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFRFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSPRLALSGMMEKQPDVANATEAngtfsdgsktnpDEIVPPDadaetgnvhendqhqdni
Low Complexity Region (SEG)
MKKSGAAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVlllilsllFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFRFWpkkdeeekpkWAARLFYavvavlvilllRHHAPDEAARARYQKRMSNIIDDVLEWSPRLALSGMMEKQPDVANATEANGTFSDGSKTNPDEIVPPDADAETGNVHENDQHQDNI
Disordered region (IsUnstruct)
****************************************VFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFRFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSPRLA******************************************************
Disordered Region (DISOPRED)
********************************************FAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEV***LESDRNLETEDIANALLSKNLLVR**********************EIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFRFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEA*******R**NIIDDVLEW***********************************************************
Disordered Region (DISEMBL)
************************************AKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFRFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSPRLALSGMMEKQPDVANATEANGTFSDGSKTNPDEIVPPDADAET*************
Disordered Region (DISPRO)
************************************AKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVK*LRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFRFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSPRLALS****************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKSGAAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFRFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSPRLALSGMMEKQPDVANATEANGTFSDGSKTNPDEIVPPDADAETGNVHENDQHQDNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
Q99161	396	Translocation protein SEC	yes	no	0.544	0.489	0.263	2e-09
O13787	273	Translocation protein sec	yes	no	0.553	0.721	0.268	3e-09
Q8BU14	398	Translocation protein SEC	yes	no	0.272	0.243	0.271	2e-06
Q5R4Q3	399	Translocation protein SEC	yes	no	0.266	0.238	0.276	3e-06
Q99442	399	Translocation protein SEC	yes	no	0.266	0.238	0.276	4e-06
Q5F3A1	398	Translocation protein SEC	yes	no	0.266	0.238	0.276	1e-05
Q5AI21	293	Translocation protein SEC	N/A	no	0.494	0.600	0.252	0.0001
Q75D26	244	Translocation protein SEC	yes	no	0.536	0.782	0.246	0.0005
P21825	274	Translocation protein SEC	yes	no	0.530	0.689	0.226	0.0006

>sp|Q99161|SEC62_YARLI Translocation protein SEC62 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC62 PE=3 SV=2

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 15/209 (7%)

Query: 46  AEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFL--------RNHPEVKDILESDRNLET 97
           A+ +R HK L+ R  +L   R ++FR K  +  L        ++ P  K    + RN E 
Sbjct: 30  ADYLRSHKLLKQRPGILNGKRSDFFRVKRAIRALEDPKYKQLQSKPNSKLPPINSRN-EA 88

Query: 98  EDIANALLSKNLLVRCDRV-VKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKG 156
             I   +    + +R D++  +T    K+K       L++ P+Q F D D ++ W F   
Sbjct: 89  ISIFRLMPINQMALRVDKLPTQTALMMKQKPEQGVPVLQVNPQQEFGD-DMYYTW-FYNP 146

Query: 157 RPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLI---LSLLFVRAAIFGM 213
            PL   L          A  LFP++P   +  + Y   G+L LI     +  VR  IF +
Sbjct: 147 VPLTTYLYGALGVAAIFAGVLFPLWPIFLRQGVWYLSVGMLGLIGVFFGIALVRLVIFVL 206

Query: 214 IWILLGKRVWFFPNILAEEATLRELFRFW 242
            W  +   +W FPN+ A+   +      W
Sbjct: 207 TWPTVKPGIWIFPNLFADVGFVDSFIPLW 235

Required for preprotein translocation.
Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|O13787|SEC62_SCHPO Translocation protein sec62 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec62 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 15/212 (7%)

Query: 27  NSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHP--- 83
           +S+ P  K   K      F   ++   +L+++ A+L   RV YFR K  + FL +     
Sbjct: 3   SSNVPVLKDEDKCKFSMRFTNFLKSRPELKTKPAILNGKRVYYFRVKRVLRFLTSEAYTP 62

Query: 84  -EVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVF 142
            + K   E     E  ++   L+  ++LVR D++    R  K+KL      L+I   Q F
Sbjct: 63  KKYKGFPEISSREEAIEVLKLLIMNSMLVRVDKLPPKQR--KQKL----VELQINRNQDF 116

Query: 143 SDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILY---SCAGVLLL 199
            D D  + W +E   P     L+  + ++ LA+ LFP++P   +    Y      GV+ L
Sbjct: 117 QD-DMHYVWLYEP-LPKRVMALAVLFALVVLALVLFPLWPMFMRKGAWYLSMGGLGVIGL 174

Query: 200 ILSLLFVRAAIFGMIWILLGKRVWFFPNILAE 231
              L+ +R  +F +  +++   +W FPN+LA+
Sbjct: 175 FFVLVILRFFLFCITAVIVRPGIWLFPNLLAD 206

Acts as component of the Sec62/63 complex which is involved in SRP-independent post-translational translocation across the endoplasmic reticulum (ER) and functions together with the Sec61 complex and bip1 in a channel-forming translocon complex. In an initial step, the signal sequence seems to bind simultaneously to sec61 and sec62. sec62 and sec63 are required for interactions between sec61 and translocating polypeptides. sec62 may affect sec61-polypeptide interactions by increasing the affinity of targeting pathways for sec61 and/or by modifying sec61 to allow more efficient polypeptide interaction. A cycle of assembly and disassembly of Sec62/63 complex from sec61 may govern the activity of the translocon.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8BU14|SEC62_MOUSE Translocation protein SEC62 OS=Mus musculus GN=Sec62 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 134 LEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSC 193
           LE   +QVF D +  F W ++    +   ++     +  +A  LFP++P   ++ + Y  
Sbjct: 170 LEPHDDQVFLDGNEVFVWIYDPVH-IKTFVMGLILVIAVIAATLFPLWPAEMRVGVYYLS 228

Query: 194 AGVLLLILSLLFV---RAAIFGMIWILLGKR--VWFFPNILAE 231
            G    + S+L +   R  +F +IW++ G R   WF PN+ A+
Sbjct: 229 VGAGCFVASILLLAIARCILFLIIWLITGGRHHFWFLPNLTAD 271

Required for preprotein translocation.

Mus musculus (taxid: 10090)

>sp|Q5R4Q3|SEC62_PONAB Translocation protein SEC62 OS=Pongo abelii GN=SEC62 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 10/105 (9%)

Query: 134 LEIFPEQVFSDNDAFFAWTFEKGRPL-WQT-LLSFFWPVLTLAICLFPVYPHRCKLLILY 191
           LE   +QVF D +  + W ++   P+ ++T ++     +  +A  LFP++P   ++ + Y
Sbjct: 170 LEPHDDQVFLDGNEVYVWIYD---PVHFKTFVMGLILVIAVIAATLFPLWPAEMRVGVYY 226

Query: 192 SCAGVLLLILSLLFV---RAAIFGMIWILLGKR--VWFFPNILAE 231
              G    + S+L +   R  +F +IW++ G R   WF PN+ A+
Sbjct: 227 LSVGAGCFVASILLLAVARCILFLIIWLITGGRHHFWFLPNLTAD 271

Required for preprotein translocation.

Pongo abelii (taxid: 9601)

>sp|Q99442|SEC62_HUMAN Translocation protein SEC62 OS=Homo sapiens GN=SEC62 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 10/105 (9%)

Query: 134 LEIFPEQVFSDNDAFFAWTFEKGRPL-WQT-LLSFFWPVLTLAICLFPVYPHRCKLLILY 191
           LE   +QVF D +  + W ++   P+ ++T ++     +  +A  LFP++P   ++ + Y
Sbjct: 170 LEPHDDQVFLDGNEVYVWIYD---PVHFKTFVMGLILVIAVIAATLFPLWPAEMRVGVYY 226

Query: 192 SCAGVLLLILSLLFV---RAAIFGMIWILLGKR--VWFFPNILAE 231
              G    + S+L +   R  +F +IW++ G R   WF PN+ A+
Sbjct: 227 LSVGAGCFVASILLLAVARCILFLIIWLITGGRHHFWFLPNLTAD 271

Required for preprotein translocation.

Homo sapiens (taxid: 9606)

>sp|Q5F3A1|SEC62_CHICK Translocation protein SEC62 OS=Gallus gallus GN=SEC62 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 10/105 (9%)

Query: 134 LEIFPEQVFSDNDAFFAWTFEKGRPL-WQTL-LSFFWPVLTLAICLFPVYPHRCKLLILY 191
           LE   +QVF D +  + W ++   P+ ++T  +     +  +A  LFP++P   ++ + Y
Sbjct: 170 LEPHEDQVFLDGNEVYVWIYD---PVHFKTFAMGLVLVIAVIAATLFPLWPAEMRVGVYY 226

Query: 192 SCAGVLLLILSLLFV---RAAIFGMIWILLGKR--VWFFPNILAE 231
              G    + S+L +   R  +F +IW++ G R   WF PN+ A+
Sbjct: 227 LSVGAGCFVASILLLAVARCILFLIIWLITGGRHHFWFLPNLTAD 271

Required for preprotein translocation.

Gallus gallus (taxid: 9031)

>sp|Q5AI21|SEC62_CANAL Translocation protein SEC62 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC62 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 30/206 (14%)

Query: 55  LESRWAVLQETR-VEYFRGKDFVSFL--------RNHPEVKDILESDRNLETEDIANALL 105
           L+ R  +L  T  +E+FR K     L        + +P+   ++    N + + +   L+
Sbjct: 37  LKQRTGLLDNTNDIEFFRFKRLQRALLSDDYKQKQQNPK-NGLIPVANNEDVQKVFVLLI 95

Query: 106 SKNLLVRCDRV-------VKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRP 158
              LL+   ++       VK  +P K+K +   A      ++   D D ++ W ++K  P
Sbjct: 96  QNQLLLPLQKLHYAEVKAVKGWKPNKEKPTLKRA------DKAVMDPDVYYGWLYQKPNP 149

Query: 159 LWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWIL- 217
            +  L SF       A+ LFP++P+  K  + Y   G L LI +L F  A +  +I+I+ 
Sbjct: 150 -YILLYSFLAIAGVFAVILFPLWPNFMKRGVWYLSMGALGLI-ALFFATAIVRLIIYIIS 207

Query: 218 ---LGKRVWFFPNILAEEATLRELFR 240
                K  W FPN+  E+  + E F+
Sbjct: 208 LVAFPKPFWLFPNLF-EDCGVIESFQ 232

Required for preprotein translocation.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q75D26|SEC62_ASHGO Translocation protein SEC62 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC62 PE=3 SV=2

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 24/215 (11%)

Query: 46  AEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRN---------HPEVKDILESDRNLE 96
           A  +R HK+L+ R  + Q   +E+FR K FV  L +          PE    + S+ +  
Sbjct: 11  ATLLRHHKELKQRQGMFQSRHMEFFRFKRFVRALNSDEYRAKSEREPEKYPPVRSEED-- 68

Query: 97  TEDIANALLSKNLLVRCDRV--VKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFE 154
             D+  +L+   L++ C ++   +    G      +P HL +   +   D D ++ WT  
Sbjct: 69  ARDVFVSLIKAQLVLPCTKLHTAQCREHGLAPSKDYP-HL-LLSTKATLDADEYYVWT-H 125

Query: 155 KGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLL---LILSLLFVRAAIF 211
             + L   L      V  LA   +P++PH  K ++ Y   G+L    +  +L  VR  I+
Sbjct: 126 NPKTLTDYLTVVGVIVGILAFVCYPLWPHSMKRVVYYLSLGLLGLLAVFSALALVRFVIY 185

Query: 212 GMIWILLGKR--VWFFPNILAEE---ATLRELFRF 241
            +      +R   W FPN+  +    A+ + L+ F
Sbjct: 186 VLSLAFCSERGGFWIFPNLFEDCGVIASFKPLYGF 220

Required for preprotein translocation.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|P21825|SEC62_YEAST Translocation protein SEC62 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC62 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 27/216 (12%)

Query: 46  AEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRN---------HPEVKDILESDR--- 93
           A  +R+HK+L+ R  + Q  + ++FR K FV  L +          PE+   + S++   
Sbjct: 23  ATLLRNHKELKQRQGLFQAKQTDFFRYKRFVRALHSEEYANKSARQPEIYPTIPSNKIED 82

Query: 94  NLETEDIANALLSKNLLVRCDRV--VKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAW 151
            L++ +I   L+   +++   ++   +    G K    +P HL I   +   + D +F W
Sbjct: 83  QLKSREIFIQLIKAQMVIPVKKLHSQECKEHGLKPSKDFP-HL-IVSNKAQLEADEYFVW 140

Query: 152 TFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIF 211
            +   R     L+      + LA+  +P++P   +    Y   G   ++    F   AI 
Sbjct: 141 NYNP-RTYMDYLIVIGVVSIILALVCYPLWPRSMRRGSYYVSLGAFGILAG--FFAVAIL 197

Query: 212 GMIWILLGKRV-------WFFPNILAEEATLRELFR 240
            +I  +L   V       W FPN+  E+  + E F+
Sbjct: 198 RLILYVLSLIVYKDVGGFWIFPNLF-EDCGVLESFK 232

Acts as component of the Sec62/63 complex which is involved in SRP-independent post-translational translocation across the endoplasmic reticulum (ER) and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. In an initial step, the signal sequence seems to bind simultaneously to SEC61 and SEC62. SEC62 and SEC63 are required for interactions between SEC61 and translocating polypeptides. SEC62 may affect SEC1-polypeptide interactions by increasing the affinity of targeting pathways for SEC61 and/or by modifying SEC61 to allow more efficient polypeptide interaction. A cycle of assembly and disassembly of Sec62/63 complex from SEC61 may govern the activity of the translocon. SEC62 is essential for cell growth.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
225435429	371	PREDICTED: uncharacterized protein LOC10	0.985	0.946	0.812	1e-160
449476055	364	PREDICTED: uncharacterized LOC101212624	0.994	0.972	0.796	1e-159
449442525	364	PREDICTED: uncharacterized protein LOC10	0.994	0.972	0.796	1e-159
225435427	372	PREDICTED: uncharacterized protein LOC10	0.985	0.943	0.810	1e-158
388503460	364	unknown [Lotus japonicus]	0.983	0.961	0.790	1e-156
388495438	364	unknown [Lotus japonicus]	0.983	0.961	0.784	1e-155
388506486	364	unknown [Lotus japonicus]	0.983	0.961	0.784	1e-155
357460367	364	Translocation protein sec62 [Medicago tr	0.941	0.920	0.808	1e-153
356527212	358	PREDICTED: uncharacterized protein LOC10	0.904	0.899	0.820	1e-150
224106183	371	predicted protein [Populus trichocarpa]	0.991	0.951	0.791	1e-150

>gi|225435429|ref|XP_002285411.1| PREDICTED: uncharacterized protein LOC100267343 isoform 1 [Vitis vinifera] gi|297746307|emb|CBI16363.3| unnamed protein product [Vitis vinifera]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/357 (81%), Positives = 312/357 (87%), Gaps = 6/357 (1%)

Query: 1   MKKSGAAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRWA 60
           MKKS  AEKKRV+R S  +QNG RD NSDTPPRKQAAKKDVFQLFAEKVRDHKDL SRWA
Sbjct: 1   MKKSSGAEKKRVKRQSGSLQNGIRDSNSDTPPRKQAAKKDVFQLFAEKVRDHKDLVSRWA 60

Query: 61  VLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTL 120
           VLQETRVEYFRGKDFVSFLRNHPE+K+ILESDRNLE EDIAN LL KNLLVRCDRVVKT+
Sbjct: 61  VLQETRVEYFRGKDFVSFLRNHPELKEILESDRNLEVEDIANVLLRKNLLVRCDRVVKTV 120

Query: 121 RPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPV 180
           RPGKKKLSTWPAHLEIFP+ +FS+NDAFFAWTF K RPLWQTLLSFFWPVLTLAICLFPV
Sbjct: 121 RPGKKKLSTWPAHLEIFPDHLFSENDAFFAWTFVKRRPLWQTLLSFFWPVLTLAICLFPV 180

Query: 181 YPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFR 240
           YPHRCKLL+LY+CAGVLLLILSLL +R AIFG +WI+LGKRVWFFPNIL EE TLRELFR
Sbjct: 181 YPHRCKLLVLYTCAGVLLLILSLLLLRLAIFGALWIILGKRVWFFPNILVEEVTLRELFR 240

Query: 241 FWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSPR 300
           F P KDEEE+PKW ARL +AV+AVL ILLLRHHAPDEAARARYQKR+SNIIDDVLEWSPR
Sbjct: 241 FLPNKDEEERPKWTARLLFAVLAVLFILLLRHHAPDEAARARYQKRVSNIIDDVLEWSPR 300

Query: 301 LALSGMMEK-QPDVANATEANGTFSDGSKTNPDEIVPPDA-DAETGNVHENDQHQDN 355
           LALSGMMEK QP V + TE    F+DGSK +P+E V PD  D ET     +DQH D 
Sbjct: 301 LALSGMMEKQQPVVDDVTEPTNGFTDGSKASPEEAVSPDGTDGET----VSDQHGDG 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476055|ref|XP_004154627.1| PREDICTED: uncharacterized LOC101212624 [Cucumis sativus]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/359 (79%), Positives = 313/359 (87%), Gaps = 5/359 (1%)

Query: 1   MKKSGAAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRWA 60
           M+K+G  EKKRVRR S  VQN  +DPNSDTPPRKQAAKKDVFQLF+EKVRDHKDLESRWA
Sbjct: 1   MRKTGGTEKKRVRRQSTAVQNAAKDPNSDTPPRKQAAKKDVFQLFSEKVRDHKDLESRWA 60

Query: 61  VLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTL 120
           VLQETRVEYFRGKDFVSFLRNHPE+KDIL+SD+NLETEDI NALLSKNLLVRCDRVVKT+
Sbjct: 61  VLQETRVEYFRGKDFVSFLRNHPELKDILDSDKNLETEDIGNALLSKNLLVRCDRVVKTV 120

Query: 121 RPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPV 180
           RPGK+KLSTWPAHLEIFP+QVFS+ DAFFAWTF K RP WQTLLSF WPVLTLAICLFPV
Sbjct: 121 RPGKRKLSTWPAHLEIFPDQVFSEQDAFFAWTFVKRRPFWQTLLSFCWPVLTLAICLFPV 180

Query: 181 YPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFR 240
           YPH+CKLLILYSCAGVLLLILSLL +R A+FG+ +ILLGKR+WFFPNILAEEATLRELFR
Sbjct: 181 YPHQCKLLILYSCAGVLLLILSLLLLRGAVFGLSYILLGKRMWFFPNILAEEATLRELFR 240

Query: 241 FWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSPR 300
           FWP KDEEEKPKW  RLFYAVVAVL+ILLLRHHAPDEAARARYQKR+SNIIDDVLEWSPR
Sbjct: 241 FWPSKDEEEKPKWTTRLFYAVVAVLIILLLRHHAPDEAARARYQKRVSNIIDDVLEWSPR 300

Query: 301 LALSGMMEKQPDVANATEANGTFSD---GSKTNPDEIVPPDADAETGN-VHENDQHQDN 355
           LALSGMMEKQ  V NAT  +   ++      T PD I P   + ET + V  +DQ+  +
Sbjct: 301 LALSGMMEKQQTVVNATNPDPNMAENPTSDSTGPDSI-PDQPEPETIDYVEHSDQYNHD 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442525|ref|XP_004139032.1| PREDICTED: uncharacterized protein LOC101212624 [Cucumis sativus]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/359 (79%), Positives = 313/359 (87%), Gaps = 5/359 (1%)

Query: 1   MKKSGAAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRWA 60
           M+K+G  EKKRVRR S  VQN  +DPNSDTPPRKQAAKKDVFQLF+EKVRDHKDLESRWA
Sbjct: 1   MRKTGGTEKKRVRRQSTAVQNAAKDPNSDTPPRKQAAKKDVFQLFSEKVRDHKDLESRWA 60

Query: 61  VLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTL 120
           VLQETRVEYFRGKDFVSFLRNHPE+KDIL+SD+NLETEDI NALLSKNLLVRCDRVVKT+
Sbjct: 61  VLQETRVEYFRGKDFVSFLRNHPELKDILDSDKNLETEDIGNALLSKNLLVRCDRVVKTV 120

Query: 121 RPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPV 180
           RPGK+KLSTWPAHLEIFP+QVFS+ DAFFAWTF K RP WQTLLSF WPVLTLAICLFPV
Sbjct: 121 RPGKRKLSTWPAHLEIFPDQVFSEQDAFFAWTFVKRRPFWQTLLSFCWPVLTLAICLFPV 180

Query: 181 YPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFR 240
           YPH+CKLLILYSCAGVLLLILSLL +R A+FG+ +ILLGKR+WFFPNILAEEATLRELFR
Sbjct: 181 YPHQCKLLILYSCAGVLLLILSLLLLRGAVFGLSYILLGKRMWFFPNILAEEATLRELFR 240

Query: 241 FWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSPR 300
           FWP KDEEEKPKW  RLFYAVVAVL+ILLLRHHAPDEAARARYQKR+SNIIDDVLEWSPR
Sbjct: 241 FWPSKDEEEKPKWTTRLFYAVVAVLIILLLRHHAPDEAARARYQKRVSNIIDDVLEWSPR 300

Query: 301 LALSGMMEKQPDVANATEANGTFSD---GSKTNPDEIVPPDADAETGN-VHENDQHQDN 355
           LALSGMMEKQ  V NAT  +   ++      T PD I P   + ET + V  +DQ+  +
Sbjct: 301 LALSGMMEKQQTVVNATNPDPNTAENPTSDSTGPDSI-PDQPEPETIDYVEHSDQYNHD 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435427|ref|XP_002285413.1| PREDICTED: uncharacterized protein LOC100267343 isoform 2 [Vitis vinifera]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/358 (81%), Positives = 312/358 (87%), Gaps = 7/358 (1%)

Query: 1   MKKSGAAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRWA 60
           MKKS  AEKKRV+R S  +QNG RD NSDTPPRKQAAKKDVFQLFAEKVRDHKDL SRWA
Sbjct: 1   MKKSSGAEKKRVKRQSGSLQNGIRDSNSDTPPRKQAAKKDVFQLFAEKVRDHKDLVSRWA 60

Query: 61  VLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTL 120
           VLQETRVEYFRGKDFVSFLRNHPE+K+ILESDRNLE EDIAN LL KNLLVRCDRVVKT+
Sbjct: 61  VLQETRVEYFRGKDFVSFLRNHPELKEILESDRNLEVEDIANVLLRKNLLVRCDRVVKTV 120

Query: 121 RPGKKKLSTWPAHLEIFPE-QVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFP 179
           RPGKKKLSTWPAHLEIFP+  +FS+NDAFFAWTF K RPLWQTLLSFFWPVLTLAICLFP
Sbjct: 121 RPGKKKLSTWPAHLEIFPDDHLFSENDAFFAWTFVKRRPLWQTLLSFFWPVLTLAICLFP 180

Query: 180 VYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELF 239
           VYPHRCKLL+LY+CAGVLLLILSLL +R AIFG +WI+LGKRVWFFPNIL EE TLRELF
Sbjct: 181 VYPHRCKLLVLYTCAGVLLLILSLLLLRLAIFGALWIILGKRVWFFPNILVEEVTLRELF 240

Query: 240 RFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSP 299
           RF P KDEEE+PKW ARL +AV+AVL ILLLRHHAPDEAARARYQKR+SNIIDDVLEWSP
Sbjct: 241 RFLPNKDEEERPKWTARLLFAVLAVLFILLLRHHAPDEAARARYQKRVSNIIDDVLEWSP 300

Query: 300 RLALSGMMEK-QPDVANATEANGTFSDGSKTNPDEIVPPDA-DAETGNVHENDQHQDN 355
           RLALSGMMEK QP V + TE    F+DGSK +P+E V PD  D ET     +DQH D 
Sbjct: 301 RLALSGMMEKQQPVVDDVTEPTNGFTDGSKASPEEAVSPDGTDGET----VSDQHGDG 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503460|gb|AFK39796.1| unknown [Lotus japonicus]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 283/358 (79%), Positives = 308/358 (86%), Gaps = 8/358 (2%)

Query: 1   MKKS--GAAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESR 58
           MKKS  GAAEKKRVRRSSA       D  SD PPRKQAAKKDVFQ+FAEKVRDHKDL SR
Sbjct: 1   MKKSSGGAAEKKRVRRSSAP------DLTSDAPPRKQAAKKDVFQVFAEKVRDHKDLVSR 54

Query: 59  WAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVK 118
           WAVLQETRVEYFRGKDF SFL+NHPEVKDILESDRNLETEDIAN LL+KNLLVRCDRVVK
Sbjct: 55  WAVLQETRVEYFRGKDFASFLKNHPEVKDILESDRNLETEDIANILLAKNLLVRCDRVVK 114

Query: 119 TLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLF 178
           T+RPGKKKLSTWPAHLEIFPEQ+FS+NDAFFAWTF K  PLWQTLLSFFWPVLTLAICLF
Sbjct: 115 TVRPGKKKLSTWPAHLEIFPEQIFSENDAFFAWTFAKRHPLWQTLLSFFWPVLTLAICLF 174

Query: 179 PVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLREL 238
           PVYPHRCKLLILYSCAG+L LILSLL +R AIFG ++I LGKRVWFFPNILAEEATL EL
Sbjct: 175 PVYPHRCKLLILYSCAGILFLILSLLLIRGAIFGALYIFLGKRVWFFPNILAEEATLGEL 234

Query: 239 FRFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWS 298
           FRFWPKKDEEE+PKW  R+FYAVVAVL ILLLRHHAPDEAARARYQKR+SNIIDDVLEWS
Sbjct: 235 FRFWPKKDEEERPKWTTRIFYAVVAVLFILLLRHHAPDEAARARYQKRVSNIIDDVLEWS 294

Query: 299 PRLALSGMMEKQPDVANATEANGTFSDGSKTNPDEIVPPDADAETGNVHENDQHQDNI 356
           P LALSGMM+KQ +V+NAT ++   S  S+T P++  P D        ++ ++  DNI
Sbjct: 295 PSLALSGMMDKQQNVSNATGSSDAASQASQTGPEDAAPADGSETFTEQYDTEEVMDNI 352

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495438|gb|AFK35785.1| unknown [Lotus japonicus]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 281/358 (78%), Positives = 307/358 (85%), Gaps = 8/358 (2%)

Query: 1   MKKS--GAAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESR 58
           MKKS  GAAEKKRVRRSSA       D  SD PPRKQAAKKDVFQ+FAEKVRDHKDL SR
Sbjct: 1   MKKSSGGAAEKKRVRRSSAP------DLTSDAPPRKQAAKKDVFQVFAEKVRDHKDLVSR 54

Query: 59  WAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVK 118
           WAVLQETRVEYFRG+DF SFL+NHPEVKDILESDRNLETEDIAN LL+KNLLVRCDRVVK
Sbjct: 55  WAVLQETRVEYFRGRDFASFLKNHPEVKDILESDRNLETEDIANILLAKNLLVRCDRVVK 114

Query: 119 TLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLF 178
           T+RPGKKKLSTWPAHLEIFPEQ+FS+NDAFFAWTF K  PLWQTL SFFWPVLTLAICLF
Sbjct: 115 TVRPGKKKLSTWPAHLEIFPEQIFSENDAFFAWTFAKRHPLWQTLPSFFWPVLTLAICLF 174

Query: 179 PVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLREL 238
           PVYPHRCKLLILYSCAG+L LILSLL +R AIFG ++I LGKRVWFFPNILAEEATL EL
Sbjct: 175 PVYPHRCKLLILYSCAGILFLILSLLLIRGAIFGALYIFLGKRVWFFPNILAEEATLGEL 234

Query: 239 FRFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWS 298
           FRFWPKKDEEE+PKW  R+FYAVVAVL ILLLRHHAPDEAARARYQKR+SNIIDDVLEWS
Sbjct: 235 FRFWPKKDEEERPKWTTRIFYAVVAVLFILLLRHHAPDEAARARYQKRVSNIIDDVLEWS 294

Query: 299 PRLALSGMMEKQPDVANATEANGTFSDGSKTNPDEIVPPDADAETGNVHENDQHQDNI 356
           P LALSGMM+KQ +V+NAT ++   S  S+T P++  P D        ++ ++  DNI
Sbjct: 295 PSLALSGMMDKQQNVSNATGSSDAASQASQTGPEDAAPADGSETFTEQYDTEEVMDNI 352

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506486|gb|AFK41309.1| unknown [Lotus japonicus]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 281/358 (78%), Positives = 306/358 (85%), Gaps = 8/358 (2%)

Query: 1   MKKS--GAAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESR 58
           MKKS  GAAEKKRVRRSSA       D  SD PPRKQAAKKDVFQ+FA KVRDHKDL SR
Sbjct: 1   MKKSSGGAAEKKRVRRSSAP------DLTSDAPPRKQAAKKDVFQVFAGKVRDHKDLVSR 54

Query: 59  WAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVK 118
           WAVLQE RVEYFRGKDF SFL+NHPEVKDILESDRNLETEDIAN LL+KNLLVRCDRVVK
Sbjct: 55  WAVLQEARVEYFRGKDFASFLKNHPEVKDILESDRNLETEDIANILLAKNLLVRCDRVVK 114

Query: 119 TLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLF 178
           T+RPGKKKLSTWPAHLEIFPEQ+FS+NDAFFAWTF K  PLWQTLLSFFWPVLTLAICLF
Sbjct: 115 TVRPGKKKLSTWPAHLEIFPEQIFSENDAFFAWTFAKRHPLWQTLLSFFWPVLTLAICLF 174

Query: 179 PVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLREL 238
           PVYPHRCKLLILYSCAG+L LILSLL +R AIFG ++I LGKRVWFFPNILAEEATL EL
Sbjct: 175 PVYPHRCKLLILYSCAGILFLILSLLLIRGAIFGALYIFLGKRVWFFPNILAEEATLGEL 234

Query: 239 FRFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWS 298
           FRFWPKKDEEE+PKW  R+FYAVVAVL ILLLRHHAPDEAARARYQKR+SNIIDDVLEWS
Sbjct: 235 FRFWPKKDEEERPKWTTRIFYAVVAVLFILLLRHHAPDEAARARYQKRVSNIIDDVLEWS 294

Query: 299 PRLALSGMMEKQPDVANATEANGTFSDGSKTNPDEIVPPDADAETGNVHENDQHQDNI 356
           P LALSGMM+KQ +V+NAT ++   S  S+T P++  P D        ++ ++  DNI
Sbjct: 295 PSLALSGMMDKQQNVSNATGSSDAASQASQTGPEDAAPADGSETFTEQYDTEEVMDNI 352

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460367|ref|XP_003600465.1| Translocation protein sec62 [Medicago truncatula] gi|355489513|gb|AES70716.1| Translocation protein sec62 [Medicago truncatula]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 278/344 (80%), Positives = 302/344 (87%), Gaps = 9/344 (2%)

Query: 1   MKKS--GAAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESR 58
           MKKS  GAAEKKRVRRSSA       DP++D PPRKQA KKDV+Q+FAEKVRDHK+L SR
Sbjct: 1   MKKSSGGAAEKKRVRRSSAP------DPSTDVPPRKQAVKKDVYQVFAEKVRDHKELVSR 54

Query: 59  WAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVK 118
           WAVLQETRVEYFRGKDFVSFL+NHPEVKDILESDR+LETEDIAN LL KNLLVRCDRVVK
Sbjct: 55  WAVLQETRVEYFRGKDFVSFLKNHPEVKDILESDRSLETEDIANILLEKNLLVRCDRVVK 114

Query: 119 TLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLF 178
           TLRPGKKKLSTWPAHLEIFPEQ FS+NDAFFAWTF K  PLWQTLLSFFWPVLTLAICLF
Sbjct: 115 TLRPGKKKLSTWPAHLEIFPEQAFSENDAFFAWTFVKRHPLWQTLLSFFWPVLTLAICLF 174

Query: 179 PVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLREL 238
           PVYPH CKLLILYSCAG+L LILSLL +R  IFG+++IL+GKR+WFFPNILAEEATLREL
Sbjct: 175 PVYPHSCKLLILYSCAGILFLILSLLLIRGTIFGVLYILVGKRIWFFPNILAEEATLREL 234

Query: 239 FRFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWS 298
           FRFWPKKDEEE+PKW  R+FYAVVAVL ILLLRHHAPDEAARARYQKR+SNIIDDVLEWS
Sbjct: 235 FRFWPKKDEEERPKWTTRIFYAVVAVLFILLLRHHAPDEAARARYQKRVSNIIDDVLEWS 294

Query: 299 PRLALSGMMEKQPDVANATEANGTFSDGSKTNPDEIVPPDADAE 342
           P LALSGMM+KQ +V NAT +    S GS T P+   P D++ E
Sbjct: 295 PSLALSGMMDKQ-NVTNATGSTDAASQGSTTGPEHEAPTDSNDE 337

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527212|ref|XP_003532206.1| PREDICTED: uncharacterized protein LOC100784481 [Glycine max]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 274/334 (82%), Positives = 296/334 (88%), Gaps = 12/334 (3%)

Query: 1   MKKSG--AAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESR 58
           MKKS   AA+KKRVRRSSA       DP SD PPRKQ  KKDVFQ+FAEKVRDHK+L SR
Sbjct: 1   MKKSSGSAADKKRVRRSSAP------DPTSDAPPRKQVVKKDVFQVFAEKVRDHKELVSR 54

Query: 59  WAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVK 118
           WAVLQETRVEYFRGKDFVSFL+NHPE+KD+LESDRNLETE+IAN LL+KNLLVRCDRVVK
Sbjct: 55  WAVLQETRVEYFRGKDFVSFLKNHPELKDVLESDRNLETEEIANILLAKNLLVRCDRVVK 114

Query: 119 TLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLF 178
           T+RPGKKKLSTWPAHLEIFPEQVFS+NDAFFAWTF K  PLWQTLLSFFWPVLTLAICLF
Sbjct: 115 TVRPGKKKLSTWPAHLEIFPEQVFSENDAFFAWTFVKRHPLWQTLLSFFWPVLTLAICLF 174

Query: 179 PVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLREL 238
           PVYPHRCKLLILYSCAG+L LILSLL +R  IFG ++I+LGKR+WFFPNILAEEATLREL
Sbjct: 175 PVYPHRCKLLILYSCAGILFLILSLLLIRGTIFGALYIILGKRIWFFPNILAEEATLREL 234

Query: 239 FRFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWS 298
           FRFWPKKDEEEKPKW  RLFYA VAVL ILLLRHHAPDEAARARYQKR+SNIIDDVLEWS
Sbjct: 235 FRFWPKKDEEEKPKWTTRLFYAGVAVLFILLLRHHAPDEAARARYQKRVSNIIDDVLEWS 294

Query: 299 PRLALSGMMEKQPDVANATEANGTFSDGSKTNPD 332
           P LALSGMM+KQ +VANAT +    +D SK  P+
Sbjct: 295 PTLALSGMMDKQQNVANATGS----ADASKNGPE 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106183|ref|XP_002314075.1| predicted protein [Populus trichocarpa] gi|222850483|gb|EEE88030.1| predicted protein [Populus trichocarpa]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 285/360 (79%), Positives = 312/360 (86%), Gaps = 7/360 (1%)

Query: 1   MKKSG-AAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRW 59
           MKKSG AA+KKRVRRSS  V N +RD NSDTPPRKQAAKKDVFQLFAEKVRDHKDL SRW
Sbjct: 1   MKKSGGAADKKRVRRSSGAVTNASRDLNSDTPPRKQAAKKDVFQLFAEKVRDHKDLVSRW 60

Query: 60  AVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKT 119
           AVLQETRVEYFRGKDFVSFL+NH EVKDILES+ NLE E+IAN LLSKNLLVRCDRVVKT
Sbjct: 61  AVLQETRVEYFRGKDFVSFLKNHSEVKDILESNNNLEVEEIANTLLSKNLLVRCDRVVKT 120

Query: 120 LRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFP 179
           +RPGKKKLSTWPAHLEIFP+QVFS+NDAFFAW F K RPLWQTLLS  WPVLTLAIC+FP
Sbjct: 121 VRPGKKKLSTWPAHLEIFPDQVFSENDAFFAWAFVKRRPLWQTLLSLSWPVLTLAICMFP 180

Query: 180 VYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELF 239
           VYPHRCKLLILYSCAG+LLLILSLL +RA +FG+++++LGKRVWFFPNILAEEATL ELF
Sbjct: 181 VYPHRCKLLILYSCAGLLLLILSLLSLRATVFGVLYLILGKRVWFFPNILAEEATLGELF 240

Query: 240 RFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSP 299
           RFWP KDEEE+PKW  RLFYA+VAVLVILLLRHHAPDEAARARYQKRMSNIID+VLEWSP
Sbjct: 241 RFWPNKDEEERPKWTTRLFYALVAVLVILLLRHHAPDEAARARYQKRMSNIIDEVLEWSP 300

Query: 300 RLALSGMMEKQPDVANATEANGTFSDGSKTNPDEIVPPDADAETGNV---HENDQHQDNI 356
            LALSGMMEKQP V N TE +  F+D  KT+ ++   P AD E G        D+  +NI
Sbjct: 301 SLALSGMMEKQPTVVNTTEPSN-FTDSGKTDSEK--EPPADDEGGETILEQHEDEETENI 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2088796	365	AT3G20920 [Arabidopsis thalian	0.988	0.964	0.670	2.6e-125
GENEDB_PFALCIPARUM|PF14_0361	377	PF14_0361 "translocation prote	0.477	0.450	0.295	1.3e-10
UNIPROTKB|Q8IL86	377	PF14_0361 "Sec62, putative" [P	0.477	0.450	0.295	1.3e-10
POMBASE|SPAC17G6.09	273	sec62 "ER protein translocatio	0.553	0.721	0.264	2e-09
FB|FBgn0011584	428	Trp1 "Translocation protein 1"	0.323	0.268	0.282	3.6e-07
WB|WBGene00007683	364	C18E9.2 [Caenorhabditis elegan	0.455	0.445	0.252	6.4e-05
MGI|MGI:1916526	398	Sec62 "SEC62 homolog (S. cerev	0.306	0.273	0.264	0.00019
UNIPROTKB|F1MUP3	399	SEC62 "Uncharacterized protein	0.300	0.268	0.277	0.00024
UNIPROTKB|J9NUW8	399	SEC62 "Translocation protein S	0.300	0.268	0.277	0.00038
UNIPROTKB|Q5R4Q3	399	SEC62 "Translocation protein S	0.300	0.268	0.268	0.00041

TAIR|locus:2088796 AT3G20920 [Arabidopsis thaliana (taxid:3702)]

 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 238/355 (67%), Positives = 267/355 (75%)

Query:     1 MKKSGAAEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRWA 60
             MKK   AEKKRV+RSS       RD  SD+ PRKQA KKD FQLFAEKVRDHK LESRWA
Sbjct:     1 MKKPVGAEKKRVKRSSGSASTSVRDSGSDSQPRKQAVKKDSFQLFAEKVRDHKGLESRWA 60

Query:    61 VLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTL 120
             V+++ RVEYFRGKDFVSF++N+P+ KDILE D++L+T+DIAN LL KNLLVRCDRV KTL
Sbjct:    61 VMEQARVEYFRGKDFVSFMKNNPDFKDILEEDKDLDTDDIANVLLGKNLLVRCDRVTKTL 120

Query:   121 RPGKKKLSTWPAHLEIF-PEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFP 179
             RPGKKKLSTWPAHLEIF  +Q FS+NDAFFAWTFEK  PLWQTLLSFFWPVLTLAICLFP
Sbjct:   121 RPGKKKLSTWPAHLEIFRDDQSFSENDAFFAWTFEKRHPLWQTLLSFFWPVLTLAICLFP 180

Query:   180 VYPHRCKLLILYSCAGVXXXXXXXXFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELF 239
             VYPHRCKL++LYSCAG+        FVRA  FG +WILLGKRVWFFPNILAEEATL+ELF
Sbjct:   181 VYPHRCKLIVLYSCAGILLMILSLLFVRAVAFGAMWILLGKRVWFFPNILAEEATLKELF 240

Query:   240 RFWXXXXXXXXXXWAARLFYXXXXXXXXXXXRHHAPDEAARARYQKRMSNIIDDVLEWSP 299
             RFW          W +RLFY           R HAPDEAARARYQ+RMSNIIDDVLEWSP
Sbjct:   241 RFWPKKDEEEPPKWTSRLFYTVVAIVVVMLLRRHAPDEAARARYQRRMSNIIDDVLEWSP 300

Query:   300 RLALSGMMEKQPDVANATEANGTFSDGSKTNPDEIVPPDADAETGNVHENDQHQD 354
             +LALSG+ME Q  V N T+A    SD S   PD+    D D   G   +  Q ++
Sbjct:   301 KLALSGLMENQQPV-NITDAANNSSD-SAGGPDQTEEVDLDETQGEDLDETQGKE 353

GO:0005634 "nucleus" evidence=ISM

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GENEDB_PFALCIPARUM|PF14_0361 PF14_0361 "translocation protein sec62, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 173 (66.0 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 55/186 (29%), Positives = 82/186 (44%)

Query:    67 VEYFRGKDFVSFLRNHPEV--KDI--LESDRNL----ETEDIANALLSKNLLVRCD-RVV 117
             VEYFRG DFV+FL  + E+  K    L  +RNL    E E+ A+  + K  + +   + +
Sbjct:    37 VEYFRGDDFVNFLSTNGEMLKKKFPNLFINRNLSDMKEIEEFADMFIQKGYIYKAQYKPI 96

Query:   118 KTLRP----GKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTL 173
             K +      G  K   WP  L +  +Q F D  +F+    E+ + L   +L     ++ L
Sbjct:    97 KGINEKDENGVYKRPKWPKRLIMTSKQNF-DKTSFYILVHERNKKLQYFMLISLISIV-L 154

Query:   174 AICLFPVYPHRCKLLILYSCAGVXXXXXXXXFVRAAIFGMIWILLGKRVWFFPNILAEEA 233
               C+FPV+P R KL + +               R   F   W   G   W FPN+  EE 
Sbjct:   155 ICCMFPVWPLRLKLALWHISVAFLTLISIIIVGRLVAFIFFWFF-GVDYWIFPNLFDEEC 213

Query:   234 TLRELF 239
              + E F
Sbjct:   214 NVVESF 219

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=ISS

UNIPROTKB|Q8IL86 PF14_0361 "Sec62, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 173 (66.0 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 55/186 (29%), Positives = 82/186 (44%)

Query:    67 VEYFRGKDFVSFLRNHPEV--KDI--LESDRNL----ETEDIANALLSKNLLVRCD-RVV 117
             VEYFRG DFV+FL  + E+  K    L  +RNL    E E+ A+  + K  + +   + +
Sbjct:    37 VEYFRGDDFVNFLSTNGEMLKKKFPNLFINRNLSDMKEIEEFADMFIQKGYIYKAQYKPI 96

Query:   118 KTLRP----GKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTL 173
             K +      G  K   WP  L +  +Q F D  +F+    E+ + L   +L     ++ L
Sbjct:    97 KGINEKDENGVYKRPKWPKRLIMTSKQNF-DKTSFYILVHERNKKLQYFMLISLISIV-L 154

Query:   174 AICLFPVYPHRCKLLILYSCAGVXXXXXXXXFVRAAIFGMIWILLGKRVWFFPNILAEEA 233
               C+FPV+P R KL + +               R   F   W   G   W FPN+  EE 
Sbjct:   155 ICCMFPVWPLRLKLALWHISVAFLTLISIIIVGRLVAFIFFWFF-GVDYWIFPNLFDEEC 213

Query:   234 TLRELF 239
              + E F
Sbjct:   214 NVVESF 219

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=ISS

POMBASE|SPAC17G6.09 sec62 "ER protein translocation subcomplex subunit Sec62 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 159 (61.0 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 56/212 (26%), Positives = 96/212 (45%)

Query:    27 NSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNH---P 83
             +S+ P  K   K      F   ++   +L+++ A+L   RV YFR K  + FL +    P
Sbjct:     3 SSNVPVLKDEDKCKFSMRFTNFLKSRPELKTKPAILNGKRVYYFRVKRVLRFLTSEAYTP 62

Query:    84 E-VKDILESDRNLETEDIANALLSKNLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVF 142
             +  K   E     E  ++   L+  ++LVR D++    R  K+KL      L+I   Q F
Sbjct:    63 KKYKGFPEISSREEAIEVLKLLIMNSMLVRVDKLPPKQR--KQKL----VELQINRNQDF 116

Query:   143 SDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAG---VXXX 199
              D D  + W +E   P     L+  + ++ LA+ LFP++P   +    Y   G   V   
Sbjct:   117 QD-DMHYVWLYEP-LPKRVMALAVLFALVVLALVLFPLWPMFMRKGAWYLSMGGLGVIGL 174

Query:   200 XXXXXFVRAAIFGMIWILLGKRVWFFPNILAE 231
                   +R  +F +  +++   +W FPN+LA+
Sbjct:   175 FFVLVILRFFLFCITAVIVRPGIWLFPNLLAD 206

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006620 "posttranslational protein targeting to membrane" evidence=ISO

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0031207 "Sec62/Sec63 complex" evidence=ISO

FB|FBgn0011584 Trp1 "Translocation protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 140 (54.3 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
 Identities = 35/124 (28%), Positives = 57/124 (45%)

Query:   124 KKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPH 183
             KK+       L++ PEQ+F D    + W ++   PL   +  F   +  + ICLFP++P 
Sbjct:   174 KKEKKKRKIRLDMHPEQIFVDGSEAYVWIYDP-IPLHYWIFGFILLLGAVGICLFPLWPP 232

Query:   184 RCKLLILY---SCAGVXXXXXXXXFVRAAIFGMIWILLGKRV--WFFPNILAEEATLREL 238
               +  + Y   + AG          VR  +F ++W L G ++  W FPN L E+ +    
Sbjct:   233 LLRKGVYYLSIAAAGFLVFILALTIVRLIVFIIVWALTGGKLHFWIFPN-LTEDVSF--F 289

Query:   239 FRFW 242
               FW
Sbjct:   290 ASFW 293

GO:0005784 "Sec61 translocon complex" evidence=ISS;NAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00007683 C18E9.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 123 (48.4 bits), Expect = 6.4e-05, P = 6.4e-05
 Identities = 45/178 (25%), Positives = 79/178 (44%)

Query:    71 RGKDFVSFLRNHPEVKDILES-DRNLETEDIANALLSKNLLVRCDRVVKTLRPGKKKLST 129
             +G D  + +   P  K ++E  ++  + E+ A         V+ D   K     KKK+  
Sbjct:   106 KGNDSSAEVTKSP--KGVVEKRNKKAKEEETATEAEGDEKEVKKDEK-KDEEKKKKKVK- 161

Query:   130 WPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLI 189
                 L +   Q F D+   + W F+   PL + ++     V T+  CLFP++P   +  +
Sbjct:   162 ----LLVHEVQAFVDDKDVYVWVFDP-TPLMKKIIGVLMLVGTIVGCLFPLWPVWLRQGV 216

Query:   190 LY-SCAGVX--XXXXXXXFVRAAIFGMIW-ILLGK-RVWFFPNILAEEATLRELFRFW 242
              Y S  G+           +R  +FG+I+ +  GK ++W  PN L E+  + E F+ W
Sbjct:   217 YYVSITGIGCFAAIIVTAILRTILFGIIYAVTFGKHKLWVLPN-LTEDCGVLESFQPW 273

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

MGI|MGI:1916526 Sec62 "SEC62 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 118 (46.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 31/117 (26%), Positives = 52/117 (44%)

Query:   122 PG--KKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFP 179
             PG  KKK +     LE   +QVF D +  F W ++    +   ++     +  +A  LFP
Sbjct:   156 PGTPKKKETKKKFKLEPHDDQVFLDGNEVFVWIYDPVH-IKTFVMGLILVIAVIAATLFP 214

Query:   180 VYPHRCKLLILYSCAGVX---XXXXXXXFVRAAIFGMIWILLGKR--VWFFPNILAE 231
             ++P   ++ + Y   G              R  +F +IW++ G R   WF PN+ A+
Sbjct:   215 LWPAEMRVGVYYLSVGAGCFVASILLLAIARCILFLIIWLITGGRHHFWFLPNLTAD 271

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MUP3 SEC62 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 118 (46.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 33/119 (27%), Positives = 57/119 (47%)

Query:   122 PG--KKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPL-WQT-LLSFFWPVLTLAICL 177
             PG  KKK +     LE   +QVF D +  F W ++   P+ ++T ++     +  +A  L
Sbjct:   156 PGTPKKKETKKKFKLEPHDDQVFLDGNEVFVWIYD---PVHFKTFVMGLILVIAVIAATL 212

Query:   178 FPVYPHRCKLLILYSCAGVXXXXXXXXFV---RAAIFGMIWILLGKR--VWFFPNILAE 231
             FP++P   ++ + Y   G          +   R  +F +IW++ G R   WF PN+ A+
Sbjct:   213 FPLWPAEMRVGVYYLSVGAGCFVASILLLAVARCILFLIIWLITGGRHHFWFLPNLTAD 271

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|J9NUW8 SEC62 "Translocation protein SEC62" [Canis lupus familiaris (taxid:9615)]

 Score = 118 (46.6 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 33/119 (27%), Positives = 57/119 (47%)

Query:   122 PG--KKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPL-WQT-LLSFFWPVLTLAICL 177
             PG  KKK +     LE   +QVF D +  F W ++   P+ ++T ++     +  +A  L
Sbjct:   156 PGTPKKKETKKKFKLEPHDDQVFLDGNEVFVWIYD---PVHFKTFVMGLILVIAVIAATL 212

Query:   178 FPVYPHRCKLLILYSCAGVXXXXXXXXFV---RAAIFGMIWILLGKR--VWFFPNILAE 231
             FP++P   ++ + Y   G          +   R  +F +IW++ G R   WF PN+ A+
Sbjct:   213 FPLWPAEMRVGVYYLSVGAGCFVASILLLAVARCILFLIIWLITGGRHHFWFLPNLTAD 271

GO:0016021 "integral to membrane" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|Q5R4Q3 SEC62 "Translocation protein SEC62" [Pongo abelii (taxid:9601)]

 Score = 115 (45.5 bits), Expect = 0.00041, Sum P(2) = 0.00041
 Identities = 32/119 (26%), Positives = 57/119 (47%)

Query:   122 PG--KKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPL-WQT-LLSFFWPVLTLAICL 177
             PG  KKK +     LE   +QVF D +  + W ++   P+ ++T ++     +  +A  L
Sbjct:   156 PGTPKKKETKKKFKLEPHDDQVFLDGNEVYVWIYD---PVHFKTFVMGLILVIAVIAATL 212

Query:   178 FPVYPHRCKLLILYSCAGVXXXXXXXXFV---RAAIFGMIWILLGKR--VWFFPNILAE 231
             FP++P   ++ + Y   G          +   R  +F +IW++ G R   WF PN+ A+
Sbjct:   213 FPLWPAEMRVGVYYLSVGAGCFVASILLLAVARCILFLIIWLITGGRHHFWFLPNLTAD 271

GO:0005791 "rough endoplasmic reticulum" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024600001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (371 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037864001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (69 aa)						•			0.800
	GSVIVG00037758001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (688 aa)						•			0.800
	GSVIVG00027847001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (476 aa)						•			0.800
	GSVIVG00024508001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (107 aa)						•			0.800
	GSVIVG00018216001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_17, whole genome shot [...] (108 aa)						•			0.800
	GSVIVG00016972001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (489 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
TIGR00869	232	TIGR00869, sec62, protein translocation protein, S	7e-14
COG5232	259	COG5232, SEC62, Preprotein translocase subunit Sec	7e-14
pfam03839	217	pfam03839, Sec62, Translocation protein Sec62	3e-12

>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family

 Score = 69.9 bits (171), Expect = 7e-14
 Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 17/196 (8%)

Query: 49  VRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRN---------LETED 99
           +R HK+L+ R  +L   R ++FR K FV  L  H E      + +          LE  +
Sbjct: 1   LRSHKELKQRPGILNGKRTDFFRVKRFVRAL--HSEEYANKSAKQPEIYPTIPSRLEAIE 58

Query: 100 IANALLSKNLLVRCDRV-VKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRP 158
           I   L+   +++R D++  +  +  K+K S    HL++  +Q F D D ++ W +   RP
Sbjct: 59  IFILLIKNQMVIRVDKLPSQECKEHKQKPSQDFPHLQVNNKQQFED-DMYYVWNYNP-RP 116

Query: 159 LWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLI---LSLLFVRAAIFGMIW 215
               L+      + LA+ LFP++P   +    Y   G L +I    ++  +R  +F +  
Sbjct: 117 YMDYLIVILVVSIILALVLFPLWPRFMRRGSWYLSLGALGIIGGFFAVAILRLILFVLTL 176

Query: 216 ILLGKRVWFFPNILAE 231
           I++   +W FPN+ A+
Sbjct: 177 IVVKPGIWIFPNLFAD 192

Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions [Transport and binding proteins, Amino acids, peptides and amines]. Length = 232

>gnl|CDD|227557 COG5232, SEC62, Preprotein translocase subunit Sec62 [Intracellular trafficking and secretion]

 Score = 70.3 bits (172), Expect = 7e-14
 Identities = 52/251 (20%), Positives = 99/251 (39%), Gaps = 29/251 (11%)

Query: 23  TRDPNSDTPPRKQAAKKDVFQL---FAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFL 79
              P S   P  Q   K+V+ +       +R   +L+      Q+  VE FR K  + +L
Sbjct: 6   HCKPESALLPITQDQPKNVWAVYLRPKSSLRSRPELKQMHGARQKKTVELFRCKRILRWL 65

Query: 80  ---------RNHPEVK---DILESDRNLETEDIANALLSKNLLVRCDRVVKTLRPGKKKL 127
                    R  P+V      +        +++   L+ + +L      V  L+    K 
Sbjct: 66  NSEEYTLRHRRRPKVYRGVPAVAILTKEGLDELQARLIMQEMLNE----VIKLKVHINKR 121

Query: 128 STWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYP---HR 184
           +T    L++  +Q F + D  + W +E        +L   + ++TLA+ LFP++P    +
Sbjct: 122 NT--KELDVVLDQKFQE-DQHYVWAYEP-TSNISLVLCGVFVLVTLALVLFPLWPRNMRQ 177

Query: 185 CKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEA---TLRELFRF 241
               + Y   G +     L  +R  +F + ++L    +W FPN+  +     + + L+ +
Sbjct: 178 GLFYMSYGLGGFITFFFVLAILRLILFSITYLLYPSGIWLFPNLFEDVGFFESFKPLWEY 237

Query: 242 WPKKDEEEKPK 252
             K     K K
Sbjct: 238 HEKDTYSYKKK 248

Length = 259

>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 42/205 (20%), Positives = 82/205 (40%), Gaps = 29/205 (14%)

Query: 66  RVEYFRGKDFVSFLRN--------------HPEVKDILESDRNLETEDIANALLSKNLLV 111
           R ++FR K  V  L +              + ++    ++    +    A        L 
Sbjct: 3   RQDFFRAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLH 62

Query: 112 RCDRVVKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVL 171
             ++  +  +P KKK+      L++ P Q+F D++ +  W ++   PL   L+     + 
Sbjct: 63  SQEKKEEKKKPKKKKVP-----LQVNPAQLFVDDEYY-VWIYDP-VPLMTYLIGVIGVLG 115

Query: 172 TLAICLFPVYPHRCKLLILY---SCAGVLLLILSLLFVRAAIFGMIWILLGKR--VWFFP 226
            +A+ LFP++P   +  + Y      G L    +L  +R  +F ++W ++G +   W FP
Sbjct: 116 IIALVLFPLWPRFMRKGVYYLSIGALGFLAGFFALAILRLILFVIVWAIVGGKPGFWIFP 175

Query: 227 NILAEEATLRELFRFWPKKDEEEKP 251
           N+  +   L     F P      K 
Sbjct: 176 NLTEDVGFLDS---FKPLYTWHYKG 197

Length = 217

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
TIGR00869	232	sec62 protein translocation protein, Sec62 family.	100.0
PF03839	224	Sec62: Translocation protein Sec62; InterPro: IPR0	100.0
KOG2927	372	consensus Membrane component of ER protein translo	100.0
COG5232	259	SEC62 Preprotein translocase subunit Sec62 [Intrac	100.0
PF00610	74	DEP: Domain found in Dishevelled, Egl-10, and Plec	96.25
cd04450	88	DEP_RGS7-like DEP (Dishevelled, Egl-10, and Plecks	95.84
cd04449	83	DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Plec	95.75
KOG2927	372	consensus Membrane component of ER protein translo	95.68
cd04441	85	DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstri	95.51
cd04438	84	DEP_dishevelled DEP (Dishevelled, Egl-10, and Plec	95.51
cd04439	81	DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstr	95.28
cd04443	83	DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstri	95.24
smart00049	77	DEP Domain found in Dishevelled, Egl-10, and Pleck	95.21
cd04448	81	DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstr	95.15
cd04371	81	DEP DEP domain, named after Dishevelled, Egl-10, a	95.08
cd04440	93	DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstr	94.61
cd04442	82	DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstri	94.55
cd04437	125	DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin)	94.46
cd04446	95	DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstri	93.55
cd04444	109	DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin	91.46
cd04445	99	DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin	88.28
cd04436	84	DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin	81.33

>TIGR00869 sec62 protein translocation protein, Sec62 family

Probab=100.00  E-value=4.2e-66  Score=483.12  Aligned_cols=196  Identities=26%  Similarity=0.493  Sum_probs=173.4

Q ss_pred             HhcCCCCccceeeecCceEeEeehHHHHHHHhcCcccc-----cc-cc--CCChHHHHHHHHHHHhcCceeeeecccc-c
Q 018428           49 VRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVK-----DI-LE--SDRNLETEDIANALLSKNLLVRCDRVVK-T  119 (356)
Q Consensus        49 LR~~k~lK~R~gil~gkrVdyFRGkraVraL~~~p~~~-----~~-L~--~dr~~~a~~~~~~LL~~~~~~Rv~K~~~-~  119 (356)
                      ||+|++||+|+|+++|+|||||||+||||||+++++.+     +. +.  +++ .+++++++.||+++|++||+|+++ +
T Consensus         1 lr~~k~lk~R~~il~g~rVeyFRgkr~vraL~s~~y~~~~~k~~~~lp~i~~r-~da~~~~~~Li~~~l~~R~~k~~~~~   79 (232)
T TIGR00869         1 LRSHKELKQRPGILNGKRTDFFRVKRFVRALHSEEYANKSAKQPEIYPTIPSR-LEAIEIFILLIKNQMVIRVDKLPSQE   79 (232)
T ss_pred             CCCCCCCCcceeeecCceeEEeeHHHHHHHHhCcHhhhhcccCcccCCCCCCH-HHHHHHHHHHHHcCCEEEEEeccccc
Confidence            79999999999999999999999999999999876542     11 21  234 499999999999999999999986 4


Q ss_pred             cCCCCCCCCCCCcceeecCCcccCCCCceEEEEecCCccHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHHHH-
Q 018428          120 LRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLL-  198 (356)
Q Consensus       120 ~~pgK~K~~K~P~~L~i~~~Q~F~d~d~yYvW~Ye~~~~~~~~l~~~lliv~ilai~LFPLWP~~~R~gVwYLSvglLg-  198 (356)
                      .+++++|++|++.+|+++++|.|+ +|+||+|+|||+ |+++++++++++++++|+|||||||.+||+||||+|+|+|| 
T Consensus        80 ~~~~~kkp~k~~p~L~i~~~Q~Fd-~d~~YvW~ye~~-~~~~~l~~~~~~~~ila~~lFPlWP~~~r~gv~YlS~~~lgl  157 (232)
T TIGR00869        80 CKEHKQKPSQDFPHLQVNNKQQFE-DDMYYVWNYNPR-PYMDYLIVILVVSIILALVLFPLWPRFMRRGSWYLSLGALGI  157 (232)
T ss_pred             ccccccCccCCCcceEeccccccC-CCceEEEEecCC-cHHHHHHHHHHHHHHHHHhhcccChHHHhHhHHHHHHHHHHH
Confidence            555555555565699999999995 699999999996 78999999999999999999999999999999999986555 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhCCceeeccccccccccchhccccCCCCcc
Q 018428          199 --LILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFRFWPKKDE  247 (356)
Q Consensus       199 --l~f~laIvRlILF~itw~~~g~~fWLFPNLFeD~~~~~sffp~w~~~d~  247 (356)
                        +||+++|+|+|+|+|+|+++|++||||||||||||+++||.|+|.+.+.
T Consensus       158 l~~~~~laivRlilF~i~~~~~g~~fWlfPNLfeD~Gf~eSF~Ply~~~~~  208 (232)
T TIGR00869       158 IGGFFAVAILRLILFVLTLIVVKPGIWIFPNLFADVGFLDSFKPLWGWHEK  208 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCeeeecchhcccCcceeeccceecccC
Confidence              5799999999999999999999999999999999999999999998554

protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.

>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens

Probab=100.00  E-value=2.1e-54  Score=403.44  Aligned_cols=181  Identities=31%  Similarity=0.609  Sum_probs=151.8

Q ss_pred             ceEeEeehHHHHHHHhcCcc----------ccccccCCC---hHHHHHHHHHHHhcCceeeeecc-ccc-cCCCCCCCCC
Q 018428           65 TRVEYFRGKDFVSFLRNHPE----------VKDILESDR---NLETEDIANALLSKNLLVRCDRV-VKT-LRPGKKKLST  129 (356)
Q Consensus        65 krVdyFRGkraVraL~~~p~----------~~~~L~~dr---~~~a~~~~~~LL~~~~~~Rv~K~-~~~-~~pgK~K~~K  129 (356)
                      +|+|||||||++|+|++..+          +.+...+++   ..+++++++.|+++++++|++|. +.. .+..++|+++
T Consensus         1 ~~~~ffR~Kr~~ral~s~~~k~~k~k~~~~l~~~~~~~k~~~~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~k~~k   80 (224)
T PF03839_consen    1 KRKDFFRAKRFVRALQSDAYKKKKSKKKPELKPVKKSDKIKDREEAEEIFKELIKKQLIVRVEKELHTHEPKKHKKKKKK   80 (224)
T ss_pred             CCccchHHHHHHHHhhChhhhhhhhccCcccCCcccccchhhhhhhhhhhhhcchhhhhcccccccCcccccCcCccccC
Confidence            58999999999999985433          221111111   24788999999999999999994 431 2233444456


Q ss_pred             CCcceeecCCcccCCCCceEEEEecCCccHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHH---HHHHHHHHHHH
Q 018428          130 WPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAG---VLLLILSLLFV  206 (356)
Q Consensus       130 ~P~~L~i~~~Q~F~d~d~yYvW~Ye~~~~~~~~l~~~lliv~ilai~LFPLWP~~~R~gVwYLSvg---lLgl~f~laIv  206 (356)
                      ++.+|+++++|.|.|+|+||+|+|||+ ++++++++++++++++|+|||||||++||+||||||||   |||+||+|||+
T Consensus        81 k~~~L~~~~~q~f~d~~~~YvW~ye~~-~~~~~l~~~~~~~~v~a~~lFPlWP~~~r~gv~YlS~~~lgll~~~~~laiv  159 (224)
T PF03839_consen   81 KKFRLEIHPDQTFVDPDEYYVWIYEPS-PLMQYLIGALLLVGVIAICLFPLWPRWMRQGVYYLSVGALGLLGLFFALAIV  159 (224)
T ss_pred             CCccceECcccccCCCCeEEEEEecCC-cHHHHHHHHHHHHHHHHHHhhhcChHHHhheeehhHHHHHHHHHHHHHHHHH
Confidence            778899999999998899999999996 78999999999999999999999999999999999976   67788999999


Q ss_pred             HHHHHHHHHHHh-C-CceeeccccccccccchhccccCCCCc
Q 018428          207 RAAIFGMIWILL-G-KRVWFFPNILAEEATLRELFRFWPKKD  246 (356)
Q Consensus       207 RlILF~itw~~~-g-~~fWLFPNLFeD~~~~~sffp~w~~~d  246 (356)
                      |+|||+|+|+++ | ++||||||||||||+++||.|+|.+.+
T Consensus       160 Rlilf~i~w~~~~g~~~fWlfPNLfeD~Gf~eSF~Ply~~~~  201 (224)
T PF03839_consen  160 RLILFLITWFFTGGKHGFWLFPNLFEDVGFFESFKPLYSWEY  201 (224)
T ss_pred             HHHHHHHHHHHhcCCCCEEeCCccccccchhhheeecccccc
Confidence            999999999988 5 689999999999999999999999843

These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane

>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.2e-55  Score=424.62  Aligned_cols=294  Identities=35%  Similarity=0.518  Sum_probs=230.6

Q ss_pred             hHHHHHhhhcccccCCCCCCCCCCCCCCCCCCchHHHHHHHHHhcCCCCccceeeecCceEeEeehHHHHHHHhcCcccc
Q 018428            7 AEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVK   86 (356)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~avA~~LR~~k~lK~R~gil~gkrVdyFRGkraVraL~~~p~~~   86 (356)
                      +.+.+..+.++...+..+|.-+++..++++..++.++.-++..+.++.|-+++ .++-.++.++|+++..-..-+++...
T Consensus        36 ~~~~~~~~v~~~~~s~~vd~l~dsK~~k~~~~~~lF~tr~~~~~~~~rl~~k~-~~~ra~k~~~r~~e~~~~~~~d~~~~  114 (372)
T KOG2927|consen   36 KTKFAGHRVSYFSSSKAVDVLLDSKPRKQAKKKALFQTREEKVHYHKRLNSKQ-VFERAKKVVARQKEIESKKPNDKDKA  114 (372)
T ss_pred             cchhhhccccccccchHHHHhhcchhhhhhcccccccchhhhhhHHHHHHHHH-HHHHHhhhccccccccccCcCCcchh
Confidence            44455555554444444555555666666666666666666666665565555 44555666666666655555555444


Q ss_pred             ccccCCC--hHHHHHHHHHHHhcCceeeeeccccccCCCCCCCCCCCcceeecCCcccCCCCceEEEEecCCccHHHHHH
Q 018428           87 DILESDR--NLETEDIANALLSKNLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLL  164 (356)
Q Consensus        87 ~~L~~dr--~~~a~~~~~~LL~~~~~~Rv~K~~~~~~pgK~K~~K~P~~L~i~~~Q~F~d~d~yYvW~Ye~~~~~~~~l~  164 (356)
                      +.+.+.+  +..+.+....|+..|.-.+++|+.+..++|+++.++++.+|+|+++|.|.|+|+||||+|||. |.+.+++
T Consensus       115 d~~ke~~k~~~~~~de~~~l~~e~~~~~~d~v~k~~~k~ek~kkkk~~~l~i~~dQ~F~d~de~YVW~yep~-~~~~~vl  193 (372)
T KOG2927|consen  115 DILKERDKRELKAKDEVKALLKEGLKKLCDRVAKTEEKGEKKKKKKKFELEIHDDQAFQDGDEHYVWIYEPR-PLMWQVL  193 (372)
T ss_pred             hhhcchhhhhhhHHHHHHHhhccchhhhccchhcccccchhhcccCccceeeccchhhcccCceEEEeccCC-chhHHHH
Confidence            4443321  235677888899999999999998887788767778899999999999998899999999996 6778999


Q ss_pred             HHHHHHHHHHHhhcccCcccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhC--Cceeeccccccccccchhcc
Q 018428          165 SFFWPVLTLAICLFPVYPHRCKLLILYSCAG---VLLLILSLLFVRAAIFGMIWILLG--KRVWFFPNILAEEATLRELF  239 (356)
Q Consensus       165 ~~lliv~ilai~LFPLWP~~~R~gVwYLSvg---lLgl~f~laIvRlILF~itw~~~g--~~fWLFPNLFeD~~~~~sff  239 (356)
                      ++++++++||+|||||||++||+||||+|+|   ||++||++||+|+|||+|+|+++|  .+|||||||||||||++||+
T Consensus       194 ~~~fvl~tlaivLFPLWP~~mR~gvyY~sig~~gfl~~IlvLaIvRlILF~I~~il~~g~~g~W~FPNL~eDvGfleSF~  273 (372)
T KOG2927|consen  194 GVLFVLVTLAIVLFPLWPRRMRQGVYYLSIGAGGFLAFILVLAIVRLILFGITWILTGGKHGFWLFPNLTEDVGFLESFK  273 (372)
T ss_pred             HHHHHHHHHHHHhcccCcHHHhcceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEeccchhhhhhHHHhhc
Confidence            9999999999999999999999999999983   778899999999999999999999  69999999999999999999


Q ss_pred             ccCCCCccccchhHHHHHHHHHHHHHHHHhhhccCccHHHHHHHHhhhhhhhhHHHhcccccccCcccccCCCcc
Q 018428          240 RFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSPRLALSGMMEKQPDVA  314 (356)
Q Consensus       240 p~w~~~d~~~~~~~~~Rl~~~~~~~~~~~~l~~h~p~~~~~~~~q~~~~~~~dDvldW~~~~~ls~~~~~~~~~~  314 (356)
                      |+|+..+.+. +.|++++.......    ...+|+|++.++.+++-.+++.||+    ..+.+++   ++|+|++
T Consensus       274 PLy~~~~~~~-~~~~aK~~k~skk~----~k~k~~~~eas~~~~~~~~~~~i~~----t~~e~~e---e~d~d~~  336 (372)
T KOG2927|consen  274 PLYEYHYKKD-PKKTAKLDKKSKKK----KKRKSSPEEASRSEAEQDMSGHIDP----TEKEALE---ENDTDVE  336 (372)
T ss_pred             ccccccCCCC-cchhhHHHHHHHHH----HhhhcChhhhhhhhhhhhhccCCCC----cchhhcc---ccCCchh
Confidence            9999865543 44898988765443    4678999999999999999999999    5677777   7878874

>COG5232 SEC62 Preprotein translocase subunit Sec62 [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.4e-50  Score=372.89  Aligned_cols=198  Identities=20%  Similarity=0.452  Sum_probs=172.2

Q ss_pred             hHHHHHHHHHhcCCCCccceeeecCceEeEeehHHHHHHHhc---------CccccccccCCC---hHHHHHHHHHHHhc
Q 018428           40 DVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRN---------HPEVKDILESDR---NLETEDIANALLSK  107 (356)
Q Consensus        40 d~~~avA~~LR~~k~lK~R~gil~gkrVdyFRGkraVraL~~---------~p~~~~~L~~dr---~~~a~~~~~~LL~~  107 (356)
                      -++.+++++||+++++|+|+|++|+++|||||.||++|+|.+         .|+..+.+....   .+.+.++...||.+
T Consensus        26 ~~~~r~~s~lrsrpelkq~~g~~q~k~v~~fr~kr~lR~l~sEeyt~~~~r~pkvy~gvp~~~i~~~e~~~e~~~~lim~  105 (259)
T COG5232          26 AVYLRPKSSLRSRPELKQMHGARQKKTVELFRCKRILRWLNSEEYTLRHRRRPKVYRGVPAVAILTKEGLDELQARLIMQ  105 (259)
T ss_pred             eeeechHhhhhcCHHHHhhhhhhhcceehhHHHHHHHHHHhHHHHhhhhccCCcccCCCChHHhhhhhhhHHHHHHHHHH
Confidence            457789999999999999999999999999999999999963         355555443211   13677899999999


Q ss_pred             CceeeeeccccccCCCCCCCCCCCcceeecCCcccCCCCceEEEEecCCccHHHHHHHHHHHHHHHHHhhcccCcccchh
Q 018428          108 NLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKL  187 (356)
Q Consensus       108 ~~~~Rv~K~~~~~~pgK~K~~K~P~~L~i~~~Q~F~d~d~yYvW~Ye~~~~~~~~l~~~lliv~ilai~LFPLWP~~~R~  187 (356)
                      .++.+++|++.+.  .|.   +.| +|+++.+|.|. +|+||||.|||. +...+++.++.+++++|+|||||||+.||.
T Consensus       106 ~ml~~v~kl~~~~--~K~---~~~-el~V~~~q~fq-~D~hyVw~yep~-~~~~~~l~~~fvlv~lalVlfplWPr~mr~  177 (259)
T COG5232         106 EMLNEVIKLKVHI--NKR---NTK-ELDVVLDQKFQ-EDQHYVWAYEPT-SNISLVLCGVFVLVTLALVLFPLWPRNMRQ  177 (259)
T ss_pred             HHhHHHHhcChhh--hhc---cCc-eeEeechhhhc-ccceeeeecCCC-ccchhhHHHHHHHHHHHHHHHhcCchHhhc
Confidence            9999999987532  222   233 89999999997 589999999996 677899999999999999999999999999


Q ss_pred             hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccccccccchhccccCCCC
Q 018428          188 LILYSCA---GVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFRFWPKK  245 (356)
Q Consensus       188 gVwYLSv---glLgl~f~laIvRlILF~itw~~~g~~fWLFPNLFeD~~~~~sffp~w~~~  245 (356)
                      |.||+|+   |+|++||++||+|+|||+||+++..+|||||||||||||+++||.|+|.+-
T Consensus       178 g~~Y~s~g~~G~i~~ffvlaIlRliLf~it~~~y~~GiWlFPNLfeDvGf~eSFkPLw~~h  238 (259)
T COG5232         178 GLFYMSYGLGGFITFFFVLAILRLILFSITYLLYPSGIWLFPNLFEDVGFFESFKPLWEYH  238 (259)
T ss_pred             CeeeeeeccchHHHHHHHHHHHHHHHHHhhheeecCceeecchHHhhcchhhhcchHHhhc
Confidence            9999996   567789999999999999999999999999999999999999999999973

>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways

Probab=96.25  E-value=0.022  Score=43.83  Aligned_cols=47  Identities=23%  Similarity=0.346  Sum_probs=36.5

Q ss_pred             ceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           65 TRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        65 krVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      .-.+-|.|+++|++|+++-.   ....+| .+|+.+++.|+..|+|.++..
T Consensus        13 ~~~~~F~G~e~v~WL~~~~~---~~~~~r-~eA~~l~q~Ll~~g~i~~v~~   59 (74)
T PF00610_consen   13 TYPNCFTGSEAVDWLMDNFE---GFVRDR-EEAVQLGQELLDHGFIEHVSD   59 (74)
T ss_dssp             EECCEEEHHHHHHHHHHTSC---TSTSSH-HHHHHHHHHHHHCTSEEESSS
T ss_pred             EcCCEeEhHHHHHHHHHhcc---ccccCH-HHHHHHHHHHHHCCCEEECCC
Confidence            35678999999999996432   112445 489999999999999999665

It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....

>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7

Probab=95.84  E-value=0.026  Score=45.88  Aligned_cols=63  Identities=22%  Similarity=0.211  Sum_probs=46.3

Q ss_pred             HHhcCCCCccceeeecCceE-eEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeecc
Q 018428           48 KVRDHKDLESRWAVLQETRV-EYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRV  116 (356)
Q Consensus        48 ~LR~~k~lK~R~gil~gkrV-dyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~  116 (356)
                      +.-...|++.++-...++.+ .-|.|+++|+||+++-++     .++ .+|.++++.|++.|+|.++...
T Consensus         6 ~~~~~~Gv~~~~~r~~~~~~~~~F~G~~~v~WL~~~~~~-----~~~-~EA~~~~~~ll~~gli~~V~~~   69 (88)
T cd04450           6 MQDSEVGVRMRTEKSFLTTVPYAFTGKAIVQWLMDCTDV-----VDP-SEALEIAALFVKYGLITPVSDH   69 (88)
T ss_pred             hcCCCCCeeeeeeEEeeeEcCceeEhHHHHHHHHHCCCC-----CCH-HHHHHHHHHHHHCCCEEEecCC
Confidence            33345566655444445444 779999999999987654     344 3899999999999999998763

This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.

>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins

Probab=95.75  E-value=0.033  Score=44.90  Aligned_cols=67  Identities=24%  Similarity=0.275  Sum_probs=48.4

Q ss_pred             HHHHHHHhcCCC--CccceeeecCceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           43 QLFAEKVRDHKD--LESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        43 ~avA~~LR~~k~--lK~R~gil~gkrVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      .++|+-.|+..+  +|.|..- ...--.=|.|.++|+||.++-+.    ..+| .+|..+++.|+++|+|..+.+
T Consensus         2 ~~i~~~m~~~~~~~i~~r~~~-~~~~~~cF~G~e~VdWL~~~~~~----~~~r-~eAv~lgq~Ll~~g~I~hv~~   70 (83)
T cd04449           2 AEIAEAMRDPSGIGIFDRSWH-KGLPSNCFIGSEAVSWLINNFED----VDTR-EEAVELGQELMNEGLIEHVSG   70 (83)
T ss_pred             HHHHHHHhCCCCCceeechhc-CccCCcceEhHHHHHHHHHhCCC----CCCH-HHHHHHHHHHHHCCCEEecCC
Confidence            367888887554  6666432 33445669999999999976431    1445 489999999999999998654

DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.

>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.68  E-value=0.009  Score=60.25  Aligned_cols=81  Identities=23%  Similarity=0.247  Sum_probs=66.5

Q ss_pred             CCCCchHHHHHHHHHhcCCCCccceeeecCceEeEeehHHHHHHHhcCcccc----ccccCCChHHHHHHHHHHHhcCce
Q 018428           35 QAAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVK----DILESDRNLETEDIANALLSKNLL  110 (356)
Q Consensus        35 ~~~~~d~~~avA~~LR~~k~lK~R~gil~gkrVdyFRGkraVraL~~~p~~~----~~L~~dr~~~a~~~~~~LL~~~~~  110 (356)
                      +..+.+.-+.+|.++|.+++.+.  +-+.|++|+||.++.+++.|+++.+.+    +.+++++. +.......|++++++
T Consensus        14 ~~~~~k~~~~~~k~~r~~~p~~~--~~~~~~~v~~~~~s~~vd~l~dsK~~k~~~~~~lF~tr~-~~~~~~~rl~~k~~~   90 (372)
T KOG2927|consen   14 VIKPSKEEKVVAKYLRFNKPTGK--TKFAGHRVSYFSSSKAVDVLLDSKPRKQAKKKALFQTRE-EKVHYHKRLNSKQVF   90 (372)
T ss_pred             cccccHHHHHHHHHHHhcCCcCc--chhhhccccccccchHHHHhhcchhhhhhcccccccchh-hhhhHHHHHHHHHHH
Confidence            44555667899999999987765  888999999999999999999887654    56677774 667777889999999


Q ss_pred             eeeecccc
Q 018428          111 VRCDRVVK  118 (356)
Q Consensus       111 ~Rv~K~~~  118 (356)
                      +|+.+...
T Consensus        91 ~ra~k~~~   98 (372)
T KOG2927|consen   91 ERAKKVVA   98 (372)
T ss_pred             HHHhhhcc
Confidence            99988764

>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins

Probab=95.51  E-value=0.028  Score=46.17  Aligned_cols=57  Identities=19%  Similarity=0.291  Sum_probs=41.9

Q ss_pred             CCCCccceeeecCceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           52 HKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        52 ~k~lK~R~gil~gkrVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      ...+|.|..-+ ..--.=|.|.++|+||.++.+.     .+|+ +|..+++.|+++|+|..|..
T Consensus        16 ~~~ik~R~~~~-~~y~~cF~GsElVdWL~~~~~~-----~sR~-eAv~lgq~Ll~~gii~HV~~   72 (85)
T cd04441          16 NSILQVREEEG-VKYERTFVGSEFIDWLLQEGEA-----ESRR-EAVQLCRRLLEHGIIQHVSN   72 (85)
T ss_pred             CCceeeeEeCC-EEcCCEeEchHHHHHHHHcCCC-----CCHH-HHHHHHHHHHHCCCEEecCC
Confidence            34566665422 2234569999999999987643     4564 89999999999999998654

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.

>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins

Probab=95.51  E-value=0.024  Score=46.19  Aligned_cols=60  Identities=27%  Similarity=0.293  Sum_probs=41.6

Q ss_pred             cCCCCccceeeecC-ceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           51 DHKDLESRWAVLQE-TRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        51 ~~k~lK~R~gil~g-krVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      ..+|++.|.-.... .--.=|-|.++|+||.++-+.    ..+| .+|..+++.|+++|+|..+..
T Consensus        10 ~~~Gl~ikdR~~~~~~~p~~F~GsdlVdWL~~~~~~----~~~R-~eAv~~g~~Ll~~G~i~HV~~   70 (84)
T cd04438          10 PDSGLEIKDRMWLKITIPNSFIGSDLVDWLLSHVEG----LTDR-REARKYASSLLKLGYIRHTVN   70 (84)
T ss_pred             CCCCCceEEEEEeeEECCccccchHHHHHHHHhCCC----CCCH-HHHHHHHHHHHHCCcEEecCC
Confidence            34566555333322 223568999999999976542    1445 389999999999999999654

Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.

>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins

Probab=95.28  E-value=0.035  Score=44.94  Aligned_cols=43  Identities=28%  Similarity=0.448  Sum_probs=35.2

Q ss_pred             EeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           67 VEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        67 VdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      -.-|.|.++|++|.++...     .+| .+|..+++.|+..|+|..+..
T Consensus        26 ~~cF~GselVdWL~~~~~~-----~~r-~eAv~lg~~Ll~~G~i~HV~~   68 (81)
T cd04439          26 PKCFLGNEFVSWLLEIGEI-----SKP-EEGVNLGQALLENGIIHHVSD   68 (81)
T ss_pred             CceeEhHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCCEEecCC
Confidence            3559999999999977643     444 489999999999999999654

The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.

>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins

Probab=95.24  E-value=0.032  Score=45.45  Aligned_cols=43  Identities=28%  Similarity=0.247  Sum_probs=34.7

Q ss_pred             EeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           67 VEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        67 VdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      -.-|.|.++|++|.++...     .+| .+|..+++.|+.+|+|..+..
T Consensus        28 ~~cF~GselVdWL~~~~~~-----~sR-~eAv~lg~~Ll~~G~i~HV~~   70 (83)
T cd04443          28 KGVFCGCDLVSWLIEVGLA-----QDR-GEAVLYGRRLLQGGVLQHITN   70 (83)
T ss_pred             cccccHHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCCEEecCC
Confidence            3559999999999976432     455 489999999999999999654

GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.

>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin

Probab=95.21  E-value=0.053  Score=42.05  Aligned_cols=44  Identities=25%  Similarity=0.453  Sum_probs=35.6

Q ss_pred             eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           66 RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        66 rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      --+-|.|+++|++|+++-..     .++ .+|..+++.|++.|+|..+..
T Consensus        17 ~~~~F~G~e~v~wL~~~~~~-----~~r-~eA~~l~~~ll~~g~i~~v~~   60 (77)
T smart00049       17 YPNCFTGSELVDWLMDNLEI-----IDR-EEAVHLGQLLLDEGLIHHVNG   60 (77)
T ss_pred             CcceeEcHHHHHHHHHcCCc-----CCH-HHHHHHHHHHHHCCCEEEeCC
Confidence            34569999999999976643     344 489999999999999999754

Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).

>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins

Probab=95.15  E-value=0.032  Score=45.07  Aligned_cols=43  Identities=21%  Similarity=0.355  Sum_probs=34.8

Q ss_pred             EeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           67 VEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        67 VdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      -.=|.|.++|+||.++...     .+| .+|..+++.|+.+|+|..|..
T Consensus        26 ~~cF~GselVdWL~~~~~~-----~~R-~eAv~~gq~Ll~~g~i~hV~~   68 (81)
T cd04448          26 TNCILGKELVNWLIRQGKA-----ATR-VQAIAIGQALLDAGWIECVSD   68 (81)
T ss_pred             CcccChHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCCEEecCC
Confidence            3458999999999976432     455 389999999999999999754

PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.

>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered

Probab=95.08  E-value=0.086  Score=40.90  Aligned_cols=42  Identities=26%  Similarity=0.468  Sum_probs=35.3

Q ss_pred             eEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           68 EYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        68 dyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      +-|.|+++|+||.++-..     .++ .+|+++++.|+..|+|..+..
T Consensus        27 ~~F~G~e~v~WL~~~~~~-----~~r-~ea~~~~~~ll~~g~i~~v~~   68 (81)
T cd04371          27 NCFTGSELVDWLLDNLEA-----ITR-EEAVELGQALLKHGLIHHVSD   68 (81)
T ss_pred             ceeEcHHHHHHHHHhCCC-----CCH-HHHHHHHHHHHHCCCEEEeCC
Confidence            679999999999976544     344 389999999999999999775

The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.

>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins

Probab=94.61  E-value=0.074  Score=44.49  Aligned_cols=42  Identities=12%  Similarity=0.181  Sum_probs=34.4

Q ss_pred             eEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           68 EYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        68 dyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      .-|-|+++|+||.++-+.     .+|+ +|..+++.|+..|+|..|..
T Consensus        36 ~cFvGsElVdWLi~~g~~-----~tR~-eAv~~gq~Ll~~gii~HV~~   77 (93)
T cd04440          36 SVVPASKLVDWLLAQGDC-----RTRE-EAVILGVGLCNNGFMHHVLE   77 (93)
T ss_pred             cccchhHHHHHHHHcCCC-----CCHH-HHHHHHHHHHhCCCEEecCC
Confidence            348899999999987543     4564 89999999999999999653

The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.

>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins

Probab=94.55  E-value=0.069  Score=43.53  Aligned_cols=42  Identities=29%  Similarity=0.478  Sum_probs=34.6

Q ss_pred             eEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           68 EYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        68 dyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      +=|-|.++|+||.++.+.     .+| .+|..+++.|++.|+|..|..
T Consensus        27 ~cF~GselVdWL~~~~~~-----~sR-~eAv~lgq~Ll~~gvi~HV~~   68 (82)
T cd04442          27 NCFVGKELIDWLIEHKEA-----SDR-ETAIKIMQKLLDHSIIHHVCD   68 (82)
T ss_pred             ceeEcHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCCEEeccC
Confidence            459999999999976542     445 389999999999999999644

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.

>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins

Probab=94.46  E-value=0.15  Score=44.66  Aligned_cols=84  Identities=18%  Similarity=0.300  Sum_probs=55.4

Q ss_pred             HHHHHHhcCC--CCccceeeecCceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeeccccccC
Q 018428           44 LFAEKVRDHK--DLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTLR  121 (356)
Q Consensus        44 avA~~LR~~k--~lK~R~gil~gkrVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~~~~~~  121 (356)
                      ++=+.++.+.  .+|.|.--+ ..--+=|.|+++|+||.++-+.    ..+|+ +|..+++.|+++|+|..|.+      
T Consensus         4 ~l~~~~~~~~~~~ikdR~~~~-~~y~~cF~GsElVdWLl~~~~~----v~sR~-eAv~lgq~Ll~~gvi~HV~~------   71 (125)
T cd04437           4 ALRNAILSDAPHLIRDRKYHL-RTYRQCCVGTELVDWLLQQSPC----VQSRS-QAVGMWQVLLEEGVLLHVDQ------   71 (125)
T ss_pred             HHHHHHHccCcccceeeeECC-EECCcccccHHHHHHHHHcCCC----CCCHH-HHHHHHHHHHhCCCeEEeCC------
Confidence            4556677654  344443321 1233559999999999987532    14453 89999999999999999753      


Q ss_pred             CCCCCCCCCCcceeecCCcccCCCCceEEEEecCC
Q 018428          122 PGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKG  156 (356)
Q Consensus       122 pgK~K~~K~P~~L~i~~~Q~F~d~d~yYvW~Ye~~  156 (356)
                                       ++.|.|+..||-+.-+-+
T Consensus        72 -----------------~h~F~D~~~fYrF~~d~~   89 (125)
T cd04437          72 -----------------ELHFQDKYQFYRFSDDEC   89 (125)
T ss_pred             -----------------cCccccCCeeEEECCccC
Confidence                             356776555676655543

Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.

>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins

Probab=93.55  E-value=0.19  Score=42.20  Aligned_cols=70  Identities=13%  Similarity=0.224  Sum_probs=49.8

Q ss_pred             HHHHHHhcCCCCccceeeecCceEeEeehHHHHHHHhc----CccccccccCCChHHHHHHHHHHHhcCceeeeecc
Q 018428           44 LFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRN----HPEVKDILESDRNLETEDIANALLSKNLLVRCDRV  116 (356)
Q Consensus        44 avA~~LR~~k~lK~R~gil~gkrVdyFRGkraVraL~~----~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~  116 (356)
                      ++.+.||...++|.|.--|.- --+=|.|+++|++|.+    |....+ ...+| .+|..+++.|+.+|+|..|...
T Consensus         3 ~ii~~~r~~v~ikdRr~~lk~-y~~CF~GsEaVDwL~~~l~~n~~f~~-~~~tR-~~Av~l~q~Ll~~gvi~~V~~~   76 (95)
T cd04446           3 SIIDALQTQVEVKKRRHNLKS-YHDCFLGSEAVDVVLAHLMQNKYFGD-VDVPR-AKAVRLCQALMDCRVFEAVGTK   76 (95)
T ss_pred             HHHHHHHhcCcccceeeecee-cccccchHHHHHHHHHHHhhccccCc-ccCCH-HHHHHHHHHHHHcCCeeeccch
Confidence            467889998888887554432 3467999999998864    222111 12345 4899999999999999997543

DEPDC4 is a DEP domain containing protein of unknown function.

>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins

Probab=91.46  E-value=0.26  Score=42.44  Aligned_cols=69  Identities=20%  Similarity=0.280  Sum_probs=51.0

Q ss_pred             HHHHHHHhc-CCCCccceeeecCc-eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeeccc
Q 018428           43 QLFAEKVRD-HKDLESRWAVLQET-RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVV  117 (356)
Q Consensus        43 ~avA~~LR~-~k~lK~R~gil~gk-rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~~  117 (356)
                      ..||.-+++ ..|+|-..=.-+++ --+=|-|+++|+||..+...     .+| .++..+|+.|+..|+|..|....
T Consensus         3 ~~L~~~mq~~~~Gik~~~~r~~~k~y~~CF~Gse~VDWLv~~~~~-----i~R-~EAv~l~q~Lmd~gli~hV~~~s   73 (109)
T cd04444           3 HRIVDKMHDSSTGIRHSPNMEQGSTYKKTFLGSALVDWLISNSFA-----ASR-LEAVTLASMLMEENFLRPVGVRS   73 (109)
T ss_pred             HHHHHHHhCCCcCcchhhhhhccccccccccchHHHHHHHHCCCC-----CCH-HHHHHHHHHHHhCCchhhHHHHh
Confidence            468888886 66776422222444 44569999999999987653     345 38999999999999999988654

Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.

>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins

Probab=88.28  E-value=0.62  Score=39.54  Aligned_cols=60  Identities=18%  Similarity=0.219  Sum_probs=44.5

Q ss_pred             CCCCccceeeecCc-eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeeccc
Q 018428           52 HKDLESRWAVLQET-RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVV  117 (356)
Q Consensus        52 ~k~lK~R~gil~gk-rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~~  117 (356)
                      +.|+|.|.-.++++ --.-|.|.+.|+||.++-.+     .+| .++..++..|++.|++.++....
T Consensus        13 ~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v-----~~r-~EAl~las~Ll~eGyL~P~gd~s   73 (99)
T cd04445          13 EKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSV-----RNR-QEGLMLASSLLNEGYLQPAGDTS   73 (99)
T ss_pred             ccchhhhhHHHhhccccceecccHHHHHHHHhhcc-----cch-HHHHHHHHHHHHcCCeeecCccc
Confidence            45677665555555 33569999999999865433     334 38899999999999999977654

Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.

>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins

Probab=81.33  E-value=3.2  Score=34.30  Aligned_cols=57  Identities=21%  Similarity=0.202  Sum_probs=42.1

Q ss_pred             CCccceeeecCceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeecc
Q 018428           54 DLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRV  116 (356)
Q Consensus        54 ~lK~R~gil~gkrVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~  116 (356)
                      ++..|.-=+-|..-+-|.|.+++++|++|...     ++. ..||.+++-|+..||+-+|--+
T Consensus        14 p~~~~kvPilGty~nt~sG~~Iv~~L~~n~~~-----~s~-~~aE~fGQdLv~~gfir~~g~v   70 (84)
T cd04436          14 PLADYKVPILGTYQNTSSGSEIVSWLQENMPE-----KDL-DAAEAFGQDLLNQGFLRLVGGV   70 (84)
T ss_pred             CCccceecccccccCcccHHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHhCchHHHhccc
Confidence            33333333445777999999999999988765     222 3789999999999999776544

Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 4e-11
 Identities = 55/290 (18%), Positives = 101/290 (34%), Gaps = 77/290 (26%)

Query: 52  HKDLESRWAVLQETRVEYFRGKDFVS-----FLRNHPEVKDILESDRN-LETEDIANALL 105
           H D E       E + +Y   KD +S     F+ N  + KD+ +  ++ L  E+I + ++
Sbjct: 6   HMDFE-----TGEHQYQY---KDILSVFEDAFVDNF-DCKDVQDMPKSILSKEEIDHIIM 56

Query: 106 SKNLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFF--AWTFEKGRP----- 158
           SK+ +    R+  TL   ++++      ++ F E+V   N  F       E+ +P     
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEM------VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 159 --------LWQTLLSF-------FWPVLTLAICLFPVYPHRCKLLILYSCAG------VL 197
                   L+     F         P L L   L  + P   K +++    G       L
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWVAL 168

Query: 198 LLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFRFWPKKDEEEKPKWAARL 257
            + LS        F + W+ L        N  + E  L  L +   + D    P W +R 
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLK-------NCNSPETVLEMLQKLLYQID----PNWTSRS 217

Query: 258 FYAVVAVLVILLLRHHAPDEAARARY---QKRMSN---IIDDVLEWSPRL 301
            ++         ++       A  R     K   N   ++ +V   + + 
Sbjct: 218 DHSS-------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKA 258

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 46/297 (15%), Positives = 75/297 (25%), Gaps = 93/297 (31%)

Query: 25  DPNSDTPPRKQAAKKDVFQLFAEK-----------VRDHK-----DLESRWAVLQETRVE 68
           D +S+   R  + + ++ +L   K           V++ K     +L  +  +L  TR  
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK--ILLTTR-- 273

Query: 69  YFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTLRPGKKKLS 128
               K    FL         L+      T D   +LL K L  R       L       +
Sbjct: 274 ---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ----DLPREVLTTN 326

Query: 129 TWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLL 188
             P  L I  E +              G   W          LT  I           L 
Sbjct: 327 --PRRLSIIAESI------------RDGLATWDNWKHVNCDKLTTIIESS--------LN 364

Query: 189 ILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFP-NILAEEATLRELFRFWPKKDE 247
           +L             +F R ++              FP +       L      W    +
Sbjct: 365 VLEP------AEYRKMFDRLSV--------------FPPSAHIPTILLS---LIWFDVIK 401

Query: 248 EEKP-------------KWAARLFYAVVAVLVILLLRHHAPDEAA-----RARYQKR 286
            +               K       ++ ++   L L+    +E A        Y   
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIY--LELKVKLENEYALHRSIVDHYNIP 456

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 9e-05
 Identities = 44/344 (12%), Positives = 98/344 (28%), Gaps = 113/344 (32%)

Query: 26  PNSDTPPRKQAAKKD--VFQLFAEKVRDHKDLESRW----------------AVLQ--ET 65
              D P   +    +     + AE +RD       W                 VL+  E 
Sbjct: 314 RPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 66  RVEYFRGKDFVSFLRNHP---EVKDIL--ESDRNLETEDIANALLSKNLLVRCDRVVKTL 120
           R + F       F  +      +  ++  +  ++ +   + N L   +L+ +        
Sbjct: 372 R-KMF--DRLSVFPPSAHIPTILLSLIWFDVIKS-DVMVVVNKLHKYSLVEK-------- 419

Query: 121 RPGKKKLSTWPAHLEIFPEQVFSDNDAFF------AWTFEKGRPLWQTLLS-----FFWP 169
           +P +  +S    +LE+  +    +N+          +   K       +       F+  
Sbjct: 420 QPKESTISIPSIYLELKVKL---ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS- 475

Query: 170 VLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNIL 229
                      + H                             +  I   +R+  F  + 
Sbjct: 476 --------HIGH-H-----------------------------LKNIEHPERMTLFRMVF 497

Query: 230 AEEATLRELFRFWPKKDEEEKPKWAARLFYAVVAVLVILLL--RHHAPDEAARARYQKRM 287
            +       FRF  +K   +   W A    +++  L  L     +   ++    R     
Sbjct: 498 LD-------FRFLEQKIRHDSTAWNAS--GSILNTLQQLKFYKPYICDNDPKYERL---- 544

Query: 288 SNIIDDVLEWSPRLALSGMMEKQPDV---ANATEANGTFSDGSK 328
              ++ +L++ P++  + +  K  D+   A   E    F +  K
Sbjct: 545 ---VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
2cso_A	127	Pleckstrin; DEP domain, platelet P47 protein, stru	96.18
1uhw_A	109	Pleckstrin; three-helix bundle, beta-ARM, riken st	95.89
1fsh_A	105	Dishevelled-1; three-helix bundle, beta-ARM, signa	95.64
2ysr_A	105	DEP domain-containing protein 1; structural genomi	95.41
1v3f_A	120	Pleckstrin 2; three-helix bundle, structural genom	95.07
3ml6_A	385	Chimeric complex between protein dishevlled2 HOMO	91.61
2pbi_A	424	Regulator of G-protein signaling 9; helix WRAP, RG	90.89

>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31

Probab=96.18  E-value=0.027  Score=48.14  Aligned_cols=70  Identities=19%  Similarity=0.224  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhc-CCCCccceeeecCc-eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeecc
Q 018428           41 VFQLFAEKVRD-HKDLESRWAVLQET-RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRV  116 (356)
Q Consensus        41 ~~~avA~~LR~-~k~lK~R~gil~gk-rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~  116 (356)
                      -..++++.+.+ +.|++.|+-....+ --.-|-|.++|+||..+..+     .+| .+|..+++.|++.|+|.++...
T Consensus        17 ~l~~Lv~~Mqd~~~GV~~~~r~~~~~~~~~cF~GsdlVdWLl~~~~~-----~sR-~EAv~lg~~Ll~~G~i~hV~d~   88 (127)
T 2cso_A           17 DLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSV-----RNR-QEGLMIASSLLNEGYLQPAGDM   88 (127)
T ss_dssp             CHHHHHHHHHSSSSSCCCEEEEETTEEEEEEEEHHHHHHHHHHTTSC-----SSH-HHHHHHHHHHHHHTSSEEESHH
T ss_pred             CHHHHHHHHhCCCCCceeeeEEeccEEecceeechHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCeEEeCccc
Confidence            37889999996 57888776666654 44679999999999976533     445 4899999999999999999764

>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A

Probab=95.89  E-value=0.0078  Score=50.25  Aligned_cols=96  Identities=20%  Similarity=0.242  Sum_probs=67.6

Q ss_pred             HHHHHHHHhc-CCCCccceeeecCc-eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeeccccc
Q 018428           42 FQLFAEKVRD-HKDLESRWAVLQET-RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKT  119 (356)
Q Consensus        42 ~~avA~~LR~-~k~lK~R~gil~gk-rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~~~~  119 (356)
                      ..++++.+++ +.|+|.|+-....+ --.-|-|.++|+||.++..+     .+| .+|..+++.|+++|+|.++....+.
T Consensus         8 l~~Lv~~Mqd~~~Gv~~~~r~~~~~~~~~cF~GselVdWLi~~~~~-----~~R-~EAv~lgq~Ll~~G~i~hV~d~~~~   81 (109)
T 1uhw_A            8 LGALYLSMKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVSNKLV-----RNR-QEGLMISASLLSEGYLQPAGDLSKN   81 (109)
T ss_dssp             HHHHHHHHHCTTTSCCCEEEESSSCEEEEECCHHHHHHHHHHHTSS-----SSH-HHHHHHHHHHHHHTSSEECSSSHHH
T ss_pred             HHHHHHHHhCCCCCceeeeeEECCEEccccccchHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCeEEeCcccccc
Confidence            6678888885 57888776666554 45679999999999975533     455 4899999999999999998764321


Q ss_pred             cCCCCCCCCCCCcceeecCCcccCCC-CceEEEEecCC
Q 018428          120 LRPGKKKLSTWPAHLEIFPEQVFSDN-DAFFAWTFEKG  156 (356)
Q Consensus       120 ~~pgK~K~~K~P~~L~i~~~Q~F~d~-d~yYvW~Ye~~  156 (356)
                      .             ++=..+..|.|+ +.||-+.=++|
T Consensus        82 ~-------------~~~~~~~~F~D~~~~lYrF~~~~~  106 (109)
T 1uhw_A           82 A-------------ADGIAENPFLDSPDAFYYFPDSGP  106 (109)
T ss_dssp             H-------------HHHSSSCCCCCCSSCCEECTTSSS
T ss_pred             c-------------cccccccceecCCCcEEEEcCCCC
Confidence            1             111224567554 47887765554

>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31

Probab=95.64  E-value=0.024  Score=46.57  Aligned_cols=70  Identities=20%  Similarity=0.226  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhc-CCCCccceeeecCc-eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           41 VFQLFAEKVRD-HKDLESRWAVLQET-RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        41 ~~~avA~~LR~-~k~lK~R~gil~gk-rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      ...+|++-+++ +.|++.|.-....+ --.=|-|.++|+||+++-+.   + .+| .+|.++++.|++.|+|..+.+
T Consensus        20 ~l~~iv~~M~~p~~Gv~i~dr~~~~~~~~~~F~G~dlVdWL~~~~~~---~-~~r-~eAv~lg~~Ll~~G~I~hv~~   91 (105)
T 1fsh_A           20 DMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYTHVEG---F-KER-REARKYASSMLKHGFLRHTVN   91 (105)
T ss_dssp             CHHHHHHHHHSTTSSSCSSCEEETTEEESSCCHHHHHHHHHHHHCCC---C-SSH-HHHHHHHHHHHHTTTEECSSS
T ss_pred             CHHHHHHHHhCCCCCceeEEeEeCCEECCceeEcHHHHHHHHHhCcC---C-CCH-HHHHHHHHHHHHCCcEEEcCC
Confidence            35667777765 45777665544443 34569999999999976531   1 345 389999999999999999643

>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.41  E-value=0.025  Score=46.46  Aligned_cols=72  Identities=13%  Similarity=0.189  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHhcCCCCccceeeecCceEeEeehHHHHHHHhcC----ccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           40 DVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNH----PEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        40 d~~~avA~~LR~~k~lK~R~gil~gkrVdyFRGkraVraL~~~----p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      ..-.+++..+|...++|.|.--+. .--+-|.|+++|++|+++    +...+  ..+| .+|..+++.|++.|+|..|..
T Consensus        12 ~lw~~ii~~~~~g~~ikdrr~~lk-~y~~CF~GsE~VdWL~~~l~~~~~fg~--~~sR-~eAv~lgq~Ll~~gvi~hV~~   87 (105)
T 2ysr_A           12 KLWNEVTTSFRAGMPLRKHRQHFK-KYGNCFTAGEAVDWLYDLLRNNSNFGP--EVTR-QQTIQLLRKFLKNHVIEDIKG   87 (105)
T ss_dssp             HHHHHHHHHHHHSCSCCCCCCSSS-SCSSCEEHHHHHHHHHHHHHHSSSSTT--TCCH-HHHHHHHHHHHHTTSSEESSC
T ss_pred             HHHHHHHHHHHcCCCcceeeeCCE-ECCccccchHHHHHHHHhcccccccCc--cCCH-HHHHHHHHHHHHCCCeEeccC
Confidence            356678899998777777653332 234579999999999864    33222  2445 389999999999999999743

>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31

Probab=95.07  E-value=0.056  Score=45.38  Aligned_cols=68  Identities=22%  Similarity=0.307  Sum_probs=47.0

Q ss_pred             HHHHHHHHhc-CCCCccceeeecC-ceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           42 FQLFAEKVRD-HKDLESRWAVLQE-TRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        42 ~~avA~~LR~-~k~lK~R~gil~g-krVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      ..+|++-+.+ ..+++.|.-..+. .--+-|.|.++|+||.++...     .+| .+|..+++.|+++|+|..+..
T Consensus         8 l~~L~~~m~~~~~Gv~i~~rr~~~k~y~~cF~GsdlVdWL~~~~~~-----~sR-~eAv~lgq~Ll~~G~i~hV~~   77 (120)
T 1v3f_A            8 LHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFA-----ASR-LEAVTLASMLMEENFLRPVGV   77 (120)
T ss_dssp             HHHHHHHHTCSSSSCCCCCCCSSSSCCSSCEEHHHHHHHHHHTTSC-----SSH-HHHHHHHHHHHHHTSEEECSS
T ss_pred             HHHHHHHHhCccCCCeeeeeEEccEEccceeehHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCCeEEccc
Confidence            4556666654 3455443222222 234679999999999987533     445 489999999999999999863

>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}

Probab=91.61  E-value=0.66  Score=45.79  Aligned_cols=71  Identities=24%  Similarity=0.269  Sum_probs=52.7

Q ss_pred             HHHHHHHHhcC-CCCccceeeecC-ceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeeccc
Q 018428           42 FQLFAEKVRDH-KDLESRWAVLQE-TRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVV  117 (356)
Q Consensus        42 ~~avA~~LR~~-k~lK~R~gil~g-krVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~~  117 (356)
                      ..++++-+++. .|++.|.-.... .--.-|-|.++|+||.++-+.    ..+| .+|..+++.|++.|+|..+.+.+
T Consensus         9 l~~i~~~M~~~~~Gl~i~dr~~~~~~~~~~F~G~elVdWL~~~~~~----~~~R-~eA~~~g~~Ll~~G~i~hv~~~~   81 (385)
T 3ml6_A            9 MASVTKAMAAPESGLEVRDRMWLKITIPNAFLGSDVVDWLYHHVEG----FPER-REARKYASGLLKAGLIRHTVNKI   81 (385)
T ss_dssp             HHHHHHHHHSTTSSSCCEEECCSSCCEEEEEEHHHHHHHHHHTCCS----CSSH-HHHHHHHHHHHHHSSEEESSSCS
T ss_pred             HHHHHHHhhCCCCCceeEeeEECcEECCCeEEhHHHHHHHHHccCC----CCCH-HHHHHHHHHHHhCCcEEEcCCcc
Confidence            55688888874 488777654443 344679999999999976431    1445 38999999999999999987543

>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=90.89  E-value=0.45  Score=47.79  Aligned_cols=70  Identities=10%  Similarity=0.188  Sum_probs=51.0

Q ss_pred             chHHHHHHHHHhc-CCCCccceeeecCc-eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           39 KDVFQLFAEKVRD-HKDLESRWAVLQET-RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        39 ~d~~~avA~~LR~-~k~lK~R~gil~gk-rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      ..-.-+|+.-.++ +.|++.|+-....+ -=.-|.|.++|+||+++-.+     + + .+|..++..|+++|||+++..
T Consensus        19 ~~~~e~lv~~M~~~~~Gv~i~~~~~~~~~~p~~F~Gsd~V~WL~~~~~~-----~-~-~EA~~lg~~L~~~Gyi~~v~d   90 (424)
T 2pbi_A           19 LQKIEALVKDMQNPETGVRMHNQRVLVTSVPHAMTGGDVLQWITQRLWI-----S-N-LEAQNLGNFIVKYGYIYPLQD   90 (424)
T ss_dssp             HHHHHHHHHHHTCTTTSCCCCCCSSCCCSSCCCEEHHHHHHHHHHHHTC-----C-H-HHHHHHHHHHHHTTSEEESSS
T ss_pred             hhhHHHHHHHHhCCCCCCCccceeecceeCCCccccHHHHHHHHHcCCC-----C-h-HHHHHHHHHHHHCCCEEeCCc
Confidence            3345566666665 55888876654443 44679999999999966532     2 2 489999999999999999744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d2csoa1	115	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	97.15
d1v3fa_	120	Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]}	96.98
d1fsha_	94	Segment polarity protein Dishevelled-1 {Mouse (Mus	95.81
d1o7fa1	142	Regulatory domain of epac2, domain 2 {Mouse (Mus m	94.58

>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00042  Score=56.05  Aligned_cols=69  Identities=19%  Similarity=0.228  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhc-CCCCccceeeecCceEeE-eehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           41 VFQLFAEKVRD-HKDLESRWAVLQETRVEY-FRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        41 ~~~avA~~LR~-~k~lK~R~gil~gkrVdy-FRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      ...+|++-+++ +.|++.++-.-+.+.... |.|+++|+||+++...     .+| .+|..+++.|+..|+|..|.-
T Consensus        10 ~l~~l~~~m~d~~~Gi~~~~~~~~~~~y~~cF~G~e~V~WL~~~~~~-----~~r-~eAv~lgq~Ll~~g~I~~V~d   80 (115)
T d2csoa1          10 DLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSV-----RNR-QEGLMIASSLLNEGYLQPAGD   80 (115)
T ss_dssp             CHHHHHHHHHSSSSSCCCEEEEETTEEEEEEEEHHHHHHHHHHTTSC-----SSH-HHHHHHHHHHHHHTSSEEESH
T ss_pred             CHHHHHHHhhCCCCCceeeEeeeCCeeccccccHHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCCeEECcc
Confidence            36789999995 678988777777776655 9999999999987543     445 389999999999999999864

>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.0016  Score=52.78  Aligned_cols=71  Identities=20%  Similarity=0.284  Sum_probs=56.4

Q ss_pred             chHHHHHHHHHhc-CCCCccceeeecCce-EeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428           39 KDVFQLFAEKVRD-HKDLESRWAVLQETR-VEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR  115 (356)
Q Consensus        39 ~d~~~avA~~LR~-~k~lK~R~gil~gkr-VdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K  115 (356)
                      ++....|++.+++ +.|++.++-..+++. -+-|.|+++|+||+++...     .+| .+|..+++.|+..|+|..+.-
T Consensus         5 ~~~l~~i~~~m~~~~~Gv~~~~~~~~~~~y~~cF~G~e~VdWL~~~~~~-----~~R-~eA~~lgq~Ll~~g~i~~V~~   77 (120)
T d1v3fa_           5 SSGLHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFA-----ASR-LEAVTLASMLMEENFLRPVGV   77 (120)
T ss_dssp             CSHHHHHHHHHTCSSSSCCCCCCCSSSSCCSSCEEHHHHHHHHHHTTSC-----SSH-HHHHHHHHHHHHHTSEEECSS
T ss_pred             chhHHHHHHHHhCCCCCceeEEEEECCEEcCcEEEhHHHHHHHHHhcCC-----CCH-HHHHHHHHHHHHCCCEEEccc
Confidence            5678889999995 567877666666664 5669999999999977543     445 389999999999999999754

>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Segment polarity protein Dishevelled-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.81  E-value=0.0074  Score=46.87  Aligned_cols=77  Identities=19%  Similarity=0.184  Sum_probs=54.7

Q ss_pred             CCCCCchHHHHHHHHHhc-CCCCccceeeecCc-eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCcee
Q 018428           34 KQAAKKDVFQLFAEKVRD-HKDLESRWAVLQET-RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLV  111 (356)
Q Consensus        34 ~~~~~~d~~~avA~~LR~-~k~lK~R~gil~gk-rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~  111 (356)
                      +|-+.+....++++-+++ ++|++.|.-....+ --.-|.|.++|+||.+|-+.    ..+| .+|..+++.|++.|+|.
T Consensus         2 ~~l~~~~~l~~iv~~M~~~~~Gl~i~dr~~~~~~y~~~F~G~e~V~WL~~~~~~----~~~r-~eAv~lgq~Ll~~g~i~   76 (94)
T d1fsha_           2 APLTVKSDMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYTHVEG----FKER-REARKYASSMLKHGFLR   76 (94)
T ss_dssp             CSCCSSSCHHHHHHHHHSTTSSSCSSCEEETTEEESSCCHHHHHHHHHHHHCCC----CSSH-HHHHHHHHHHHHTTTEE
T ss_pred             CCccccCCHHHHHHHHhCCCCCCeeEeEEeccEEcccceehHHHHHHHHHhccc----cCCH-HHHHHHHHHHHHCCceE
Confidence            344556667788888874 56787665443332 33459999999999975322    1345 38999999999999999


Q ss_pred             eeec
Q 018428          112 RCDR  115 (356)
Q Consensus       112 Rv~K  115 (356)
                      .|..
T Consensus        77 hv~~   80 (94)
T d1fsha_          77 HTVN   80 (94)
T ss_dssp             CSSS
T ss_pred             ECCC
Confidence            9654

>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Regulatory domain of epac2, domain 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.58  E-value=0.021  Score=47.26  Aligned_cols=54  Identities=19%  Similarity=0.276  Sum_probs=39.7

Q ss_pred             CccceeeecCceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeee
Q 018428           55 LESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCD  114 (356)
Q Consensus        55 lK~R~gil~gkrVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~  114 (356)
                      +|.|.--+ ..--+-|.|.++|+||+++-+.    ..+| .+|..+++.|++.|+|..+.
T Consensus        25 ikdr~~~l-~~y~~cF~G~elVdWL~~~~~~----~~sR-~eAv~lgq~Ll~~g~i~hV~   78 (142)
T d1o7fa1          25 IRDRKYHL-KTYRQCCVGTELVDWMIQQTSC----VHSR-TQAVGMWQVLLEDGVLNHVD   78 (142)
T ss_dssp             SEEEECSS-CEEEEEEEHHHHHHHHHHSSSC----CSCH-HHHHHHHHHHHHTTSEEESS
T ss_pred             cceeEECC-EEeCCeeEhHHHHHHHHHhCCC----CCCH-HHHHHHHHHHHHCCCeeecC
Confidence            45554322 3456789999999999976532    1345 48999999999999999853