Citrus Sinensis ID: 018543

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----
Protein Sequence
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccEEEEcccccccccHHHHHHHHHHHHHcccccccccccEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHccccEEcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEccccccHHHHHcHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEEEEEccccccEEEEEEEEEEccEEEEEcccccccccHHHHHHHHHHHHHccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHccEEEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlwvdkyrpktldQVIVHQDIAQNLKKLVteqdcphllfygppgsgkKTLIMALLRQVfgpgaekvkvenktwkidagsrnidlelttlssanhvelspsdagfqdRYVVQEVIKEMAknrpidtkgkrGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRlilccnssskVTEAIRSRCLNIRINSPTEEQIVKVLEFIAkkeglqlpsgfATRLAEKSNRSLRRAILSFETcrvqqypfkdnqaipamdwEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG
Flexible Loop (DISEMBL)
mlwvdkyrpktldqviVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGpgaekvkvenktwkidagsrNIDLELTTLSSANhvelspsdagfqdRYVVQEVIKEmaknrpidtkgkrgfkVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRclnirinspteEQIVKVLEFIAKkeglqlpsgfatrlaeKSNRSLRRAILSfetcrvqqypfkdnqaipAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG
Low Complexity Region (SEG)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYElllncvppvvvlkrllyellkrlDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG
Disordered region (IsUnstruct)
**WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA*********AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL**********TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE**NRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVAT**
Disordered Region (DISOPRED)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK********KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG
Disordered Region (DISEMBL)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG
Disordered Region (DISPRO)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATF*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	354	2.2.26 [Sep-21-2011]
Q8R323	356	Replication factor C subu	yes	no	0.974	0.969	0.531	1e-111
P40938	356	Replication factor C subu	yes	no	0.974	0.969	0.534	1e-110
Q2TBV1	356	Replication factor C subu	yes	no	0.974	0.969	0.531	1e-110
Q54BN3	347	Probable replication fact	yes	no	0.974	0.994	0.508	1e-109
Q8X082	352	Replication factor C subu	N/A	no	0.980	0.985	0.462	4e-96
O94697	358	Replication factor C subu	yes	no	0.966	0.955	0.438	9e-88
P38251	354	Replication factor C subu	yes	no	0.954	0.954	0.381	7e-67
Q5UQE8	370	Putative replication fact	N/A	no	0.926	0.886	0.297	2e-42
A2SQT3	321	Replication factor C smal	yes	no	0.844	0.931	0.295	3e-35
Q0W037	322	Replication factor C smal	yes	no	0.836	0.919	0.303	9e-35

>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1

 Score =  401 bits (1030), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 185/348 (53%), Positives = 265/348 (76%), Gaps = 3/348 (0%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct: 3   LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G EK+++E++T    +  +   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
            ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
           L +R+ +P+ E I  VL  + +KEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 239

Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL 301
           F ++Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYELL +C+PP +++K LL EL
Sbjct: 240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query: 302 LKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
           L   D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct: 300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.
Mus musculus (taxid: 10090)

>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2

 Score =  399 bits (1026), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/348 (53%), Positives = 264/348 (75%), Gaps = 3/348 (0%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct: 3   LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G EK+++E++T    +  +   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
            ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
           L +R+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL 301
           F  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYELL +C+PP +++K LL EL
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query: 302 LKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
           L   D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct: 300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Homo sapiens (taxid: 9606)

>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/348 (53%), Positives = 263/348 (75%), Gaps = 3/348 (0%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           LWVDKYRP +L Q+  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct: 3   LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G EK+++E++T    +  +   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
            ++T  ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct: 120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
           L +R+ +P+ E I  VL  + KKEGL LP   A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL 301
           F  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYELL +C+PP +++K LL EL
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query: 302 LKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
           L   D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct: 300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Bos taurus (taxid: 9913)

>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 177/348 (50%), Positives = 262/348 (75%), Gaps = 3/348 (0%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLW+DKY+P +LD++  H DI+ NLK ++   D PHLL YGP G+GKKT I+A+L++++G
Sbjct: 1   MLWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P A K+K++++T+K    S+NI  ++TT+SS  H+E++P +AG  DR V+Q +IKE+A++
Sbjct: 61  PNALKLKIDHRTFKHPTSSKNI--QITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQS 118

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
            PID+     FK+++LNEVDKLS++AQH+LRRTMEKY+  CRLILCC+S++KV + I+SR
Sbjct: 119 PPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSR 178

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CL IR+ +P++E+I KVL  +A  E   LPS  A  +A++S  +LR A++  E+ + +QY
Sbjct: 179 CLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQY 238

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF+  + +P +DWE ++ +I  D  +EQSP RL  VRGKLYELL +C+PP ++ K LL E
Sbjct: 239 PFQSTE-LPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLE 297

Query: 301 LLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGF 348
           + K+LD  +K E+ HWA+YYEH+ + G+K IFHLEAF+AKFMS+YK +
Sbjct: 298 IFKKLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKKY 345

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1.

Dictyostelium discoideum (taxid: 44689)

>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B14D6.460 PE=3 SV=1

 Score =  352 bits (902), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 162/350 (46%), Positives = 244/350 (69%), Gaps = 3/350 (0%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           L VDK+RP++LD +  H ++++ L+ L    D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3   LIVDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G EK+K++ + ++    S N  LE   ++S  H+E++PSD G  DR VVQ+++KE+A+ +
Sbjct: 63  GVEKIKIDARVFQ---TSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
            +D   K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL  NS++ +   IRSRC
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRC 179

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
           L +R+ +PT ++I  VL   AKKEG  +  G   R+AE+S R+LRRA+L +E    Q   
Sbjct: 180 LLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEK 239

Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL 301
             D+  IP  DWE  + +IA +IM+E +P R+ QVR KLY+LL +C+P  ++LK L ++L
Sbjct: 240 VTDSTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIILKTLTFKL 299

Query: 302 LKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVA 351
           +  +D  +K +V +W+A+YEH++R G K IFHLEAFVAKFM I++ +L++
Sbjct: 300 IPLIDDALKADVIYWSAFYEHRIRTGTKVIFHLEAFVAKFMRIFEMYLMS 349

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rfc5 PE=1 SV=1

 Score =  323 bits (829), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 153/349 (43%), Positives = 237/349 (67%), Gaps = 7/349 (2%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLW+D+YRPKTL  +  H+ +++ L  L +  + PHLL YGP G+GKKT ++A+LR+++G
Sbjct: 1   MLWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PG+EK+K++ +T+   +  +   L++  +SS +H+E++PSD G  DR ++QE++K++A++
Sbjct: 61  PGSEKLKIDQRTFLTPSSKK---LQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQS 117

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
             +D + K+ FKV+V+N  D+L+R+AQ +LRRTMEKYS + RLIL  NS+SK+ E IRSR
Sbjct: 118 AQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSR 177

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
            L +R+ +PT E+I+ V+  I   +GL+ P      +A   +R+LR+AIL  ET   +  
Sbjct: 178 TLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSP 237

Query: 241 PFK---DNQA-IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKR 296
             K   D  A +P  DW+ F+ ++   ++QEQSP R+  VR  LY+LL +C+PP  +LK 
Sbjct: 238 GNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKE 297

Query: 297 LLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 345
           LL   L ++D ++   +   AA YEH+ R GNK+IFHLEAFVA FM +Y
Sbjct: 298 LLSFFLSKVDTKLHPYLIQAAANYEHRTRMGNKSIFHLEAFVAYFMKVY 346

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFC5 PE=1 SV=1

 Score =  254 bits (649), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 134/351 (38%), Positives = 220/351 (62%), Gaps = 13/351 (3%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           LWVDKYRPK+L+ +  ++++   LK L  + +D PHLL YGP G+GKKT  MALL  +FG
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PG  ++K++ + + + A +R   LEL  +SS  H+E++PSD G  DR V+QE++KE+A+ 
Sbjct: 63  PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119

Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
             +D +  +      +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +  
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179

Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
            I+SRCL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+
Sbjct: 180 PIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239

Query: 235 CRV-QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVV 293
             +  +   K +  I   DW   + ++   I++E+S   L + R  LY+LL +C+P  ++
Sbjct: 240 MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANII 299

Query: 294 LKRLLYELL--KRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342
           LK L + LL  + L+   K  +  +++ ++ ++  GNKAIFHLE F+AK M
Sbjct: 300 LKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 350

Component of ATP-dependent clamp loader (RFC and RFC-like) complexes for DNA clamps, such as the POL30/PCNA homotrimer and the checkpoint clamp DDC1:MEC3:RAD17 complex. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighboring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA. Component of the replication factor C (RFC or activator 1) complex which loads POL30/PCNA and acts during elongation of primed DNA templates by DNA polymerase delta and epsilon. RFC has an essential but redundant activity in sister chromatid cohesion establishment. Component of the RFC-like complex CTF18-RFC which is required for efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. Component of the RFC-like RAD24-RFC complex which loads the checkpoint clamp DDC1:MEC3:RAD17 complex and is involved in DNA repair pathways. Component of the RFC-like ELG1-RFC complex which appears to have a role in DNA replication, replication fork re-start, recombination and repair.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subunit L478 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L478 PE=3 SV=1

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 194/349 (55%), Gaps = 21/349 (6%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           M + +KYRPK     + + D+ + LK L + +D PH++  GP GSGKKTL+  LL  ++ 
Sbjct: 1   MFFFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYD 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                ++   + + I+  S   ++E+  L S  H+ + P+     D+Y++QE+IK+ A +
Sbjct: 61  EDVNILR--KRKYNINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAMH 115

Query: 121 RPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
           +  D  K KR FK +V++ ++ L+  +Q +LRRTME+Y+ +CR I+ CN+ SK+ + +RS
Sbjct: 116 KSFDIFKTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRS 175

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR-VQ 238
           RC    +  PT E I  V+++IA  E ++L       + +  N +L+ AI  F  C+ + 
Sbjct: 176 RCRTFCVPLPTIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAIW-FLNCKGLN 234

Query: 239 QYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQ----VRGKLYELLLNCVPPVVVL 294
             PF       A+D E F   + S I++ ++ K +F+    +R  +Y +L+  +    ++
Sbjct: 235 CSPF------IALD-EAFDLVVES-ILECRTGKNIFKIHNDIRTNIYNILITNIKGSEII 286

Query: 295 KRLLYELLKRLDAE-IKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342
             L+ +L++++D + I   +  +A+  E+ +  G + I  +E F++  M
Sbjct: 287 NILVDKLIRKIDDDVINMNIIQYASKAEYNLTHGRRDITDIEYFISGVM 335

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Acanthamoeba polyphaga (taxid: 5757)

>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 169/352 (48%), Gaps = 53/352 (15%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +W++KYRPK L +V+  QD+ + L+  V  +  PHLLF G  G GK T  +AL R++FG 
Sbjct: 7   IWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFG- 65

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                     TW +                 N  EL+ SD    D  VV+  IK+ A+  
Sbjct: 66  ---------DTWNM-----------------NFRELNASDERGID--VVRNQIKQFARTA 97

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           P+   G   FK+L L+E D L+++AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 98  PL---GDATFKILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRC 154

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
              R    T+E I + +  IAKKEG+ +  G    +   S   +R+AI + +   +    
Sbjct: 155 AIYRFRPLTDEAISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAAI---- 210

Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRL-------FQVRGKLYELLL--NCVPPVV 292
                 +      E ++ I S+   ++    L       F+   ++   L+    + P  
Sbjct: 211 ------VSDHVTAENIYAITSNAKPQEITDLLARCLEGDFETAERMLHALMYDKGIAPNE 264

Query: 293 VLKRLLYELLKR--LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342
           +L +L  E+ +   LD  +K ++       + +M  G  A   ++A +A+ +
Sbjct: 265 LLNQLYREISRSETLDRRLKVDLIDHLGEADFRMSEGADADIQMDALLARIV 316

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) (taxid: 410358)

>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic archaeon RC-I GN=rfcS PE=3 SV=1

 Score =  147 bits (372), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +W +KYRP+ L+ VI HQ I + L   V   + PHLLF GPPG GK    +AL R+++G 
Sbjct: 6   IWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYG- 64

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                    +TW                  +N +EL+ SD    D  VV+  IK  A+  
Sbjct: 65  ---------ETWH-----------------SNFIELNASDERGID--VVRNNIKNFARTA 96

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           P+   G+  FK++ L+E D L+ +AQ +LRRTME+Y+A+CR I+ CN SSK+ E I+SRC
Sbjct: 97  PL---GEAKFKIIFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRC 153

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
              R        I   +  IAK EGL++       L   +   +RRAI + ++       
Sbjct: 154 AVYRFGPLNATDITTGITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATIA-- 211

Query: 242 FKDNQAIPAMDWEEFVFEIAS--------DIMQEQSPKRLFQVRGKLYELL----LNCVP 289
            KD  A       + +++  S        D+++     +    R KL ELL    L+   
Sbjct: 212 -KDITA-------DVIYQTTSTAKPKEIEDMLKLALNGQFMDSRNKLDELLITYGLSGTD 263

Query: 290 PVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKF 341
            +  + R ++EL   LD ++   +       + ++  G      +EA +A F
Sbjct: 264 IIDQIYRSMFEL--GLDEDVLVALVDRIGEADFRLTEGASERIQIEALLAHF 313

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Uncultured methanogenic archaeon RC-I (taxid: 351160)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
449453820	354	PREDICTED: replication factor C subunit	1.0	1.0	0.853	0.0
356511754	354	PREDICTED: replication factor C subunit	1.0	1.0	0.861	0.0
359806894	354	uncharacterized protein LOC100818329 [Gl	1.0	1.0	0.853	0.0
388499612	354	unknown [Lotus japonicus]	1.0	1.0	0.850	0.0
388511555	354	unknown [Medicago truncatula]	1.0	1.0	0.838	0.0
225439256	354	PREDICTED: probable replication factor C	1.0	1.0	0.872	0.0
224146053	353	predicted protein [Populus trichocarpa]	0.997	1.0	0.872	1e-180
15241031	354	replication factor C subunit 3/5 [Arabid	1.0	1.0	0.822	1e-180
297812933	359	nucleoside-triphosphatase/ nucleotide bi	1.0	0.986	0.816	1e-179
255569436	342	replication factor C / DNA polymerase II	0.957	0.991	0.838	1e-173

>gi|449453820|ref|XP_004144654.1| PREDICTED: replication factor C subunit 3-like [Cucumis sativus] gi|449521275|ref|XP_004167655.1| PREDICTED: replication factor C subunit 3-like [Cucumis sativus]

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/354 (85%), Positives = 336/354 (94%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQ+ VHQD+AQNLKKLV EQDCPHLLFYGP GSGKKTL+MAL+RQ+FG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P A+KVKVENKTWK+DAG+R ID+ELTTLSSANHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPID+KGKRG KVLVLN+VDKLSREAQHSLRRTMEKYS+ CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN PTEEQI KVLE+I KKEGLQLPSGFA+R+AEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF  NQAIP MDWEE++ EIAS+IM+EQSPKRLFQVRGKLYELL+NC+PP ++LKRLLYE
Sbjct: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG 354
           LLK+LDAE+KHEVCHWAAYYEH+MR G KAIFH+EAFVAKFMSIYK FL++TFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511754|ref|XP_003524588.1| PREDICTED: replication factor C subunit 3-like [Glycine max]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/354 (86%), Positives = 337/354 (95%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQV+VH DIA NLKKLVTEQD PHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQVMVHTDIAHNLKKLVTEQDSPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PGAEKVKVEN+TWKIDAGSR++DLELTTLSSANH+E+SPSDAGFQDRY+VQEVIKEMAKN
Sbjct: 61  PGAEKVKVENRTWKIDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN+P+EEQIV+VLEFI KKEGLQLP GFA R+AEKSNR+LRRAILSFETCRV QY
Sbjct: 181 CLNVRINAPSEEQIVQVLEFIGKKEGLQLPPGFAARIAEKSNRNLRRAILSFETCRVLQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF + QAIP MDWEE++ EIASDIM+EQSPKRLFQVRGKLYELL+NC+PP ++LKRLLYE
Sbjct: 241 PFTNKQAIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYE 300

Query: 301 LLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG 354
           LL++LDAE+KHEVCHWAAYYE++MR G KAIFH+EAFVAKFMSIYK FL+ATFG
Sbjct: 301 LLRKLDAELKHEVCHWAAYYEYRMRLGQKAIFHIEAFVAKFMSIYKSFLIATFG 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806894|ref|NP_001241064.1| uncharacterized protein LOC100818329 [Glycine max] gi|255645652|gb|ACU23320.1| unknown [Glycine max]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/354 (85%), Positives = 338/354 (95%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQV+VH DIA+NLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQVMVHTDIARNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PGAEKVKV+N+TWK+DAGSR++DLELTTLSSANH+E+SPSDAGFQDRY+VQEVIKEMAKN
Sbjct: 61  PGAEKVKVDNRTWKVDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN+P+EEQIV+VLEFI KKEGLQLP GFA R+ EKSNR+LRRAILSFETCRVQQY
Sbjct: 181 CLNVRINAPSEEQIVEVLEFIGKKEGLQLPPGFAARIVEKSNRNLRRAILSFETCRVQQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF + Q IP MDWEE++ EIASDIM+EQSPKRLFQVRGKLYELL+NC+PP ++LKRLLYE
Sbjct: 241 PFTNKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYE 300

Query: 301 LLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG 354
           LL++LDAE+KHEVCHWAAYYE++MR G KAIFH+EAFVAKFMSIYK FL++TFG
Sbjct: 301 LLRKLDAELKHEVCHWAAYYEYRMRLGQKAIFHIEAFVAKFMSIYKSFLISTFG 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499612|gb|AFK37872.1| unknown [Lotus japonicus]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/354 (85%), Positives = 338/354 (95%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQV+VH D+AQNLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             AEKVKVEN+TWK+DAGSR+IDLELTTLSSA+H+E+SPSDAGFQDRYVVQE+IKEMAKN
Sbjct: 61  TAAEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLNIRIN+P+EEQIV+V+EFI KKEGLQ+PSGFA R+AEKSNR+LRRAILSFETCRVQQY
Sbjct: 181 CLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF + Q IP MDWEE++ EIASDIM+EQ+PKRLFQVRGKLYELL+NC+PP ++LKRLL+E
Sbjct: 241 PFTNRQTIPPMDWEEYISEIASDIMKEQNPKRLFQVRGKLYELLINCIPPEMILKRLLFE 300

Query: 301 LLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG 354
           LL++LDAE+KHEVCHWAAYYEH+MR G KAIFH+EAFVAKFMS+YK FL+ATFG
Sbjct: 301 LLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG 354

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511555|gb|AFK43839.1| unknown [Medicago truncatula]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/354 (83%), Positives = 332/354 (93%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLD  +VH DIAQNLKKLVTE DCPHLLFYGP G+GKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PGAEKVKVEN+ WK+DAGSR+IDLELTTLSSANH+E++PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  PGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRL+LCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN+P+EEQIV+VL+FI KKEGLQLPS  A R+AEKSNR+LRRAILSFETCRVQQY
Sbjct: 181 CLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF D Q IP MDWEE++ EIASDIM+EQSPKRLFQVRGKLYELL NC+PP ++LKRLLYE
Sbjct: 241 PFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLTNCIPPEIILKRLLYE 300

Query: 301 LLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG 354
           LL++LDAE+KHEVCHWAAYYEH+MR G KAIFH+EAFVAKFMS+YK FL+ TFG
Sbjct: 301 LLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLITTFG 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439256|ref|XP_002263213.1| PREDICTED: probable replication factor C subunit 3 [Vitis vinifera] gi|296089274|emb|CBI39046.3| unnamed protein product [Vitis vinifera]

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/354 (87%), Positives = 339/354 (95%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLD +IVH D+AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMA+LRQ+FG
Sbjct: 1   MLWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P A+KVKVENKTWKIDAG+R IDLELTTLSS +H+EL+P DAGFQDRY+VQE+IKEMAKN
Sbjct: 61  PSADKVKVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GF+VLVLNEVD+LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA+RSR
Sbjct: 121 RPIDTKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLNIRIN+PTEEQI KVLEFIAKKEGLQLPSGFATR+AEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNIRINAPTEEQITKVLEFIAKKEGLQLPSGFATRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF +NQA+P MDWEE+V EIASDIM+EQSPKRLFQVRGKLYELL+NC+PP ++LKRLL E
Sbjct: 241 PFTNNQAMPPMDWEEYVSEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLLE 300

Query: 301 LLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG 354
           LLK+LDAE+KHEVCHWAAYYEH+MR G KAIFH+EAFVAKFMSIYK FL+ATFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146053|ref|XP_002325862.1| predicted protein [Populus trichocarpa] gi|222862737|gb|EEF00244.1| predicted protein [Populus trichocarpa]

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 309/354 (87%), Positives = 331/354 (93%), Gaps = 1/354 (0%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQVIVHQ+IA+NLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQVIVHQEIAENLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             AEKVKVEN+TWKIDAGSR IDLELTTLSS NHVELSPSD GFQDRY+VQE+IKEMAKN
Sbjct: 61  TSAEKVKVENRTWKIDAGSRTIDLELTTLSSTNHVELSPSDVGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN+P EEQIVKVLEFI KKEGLQLP GFA R+A+KSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINAPKEEQIVKVLEFIGKKEGLQLPPGFAARIADKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF  NQAIP MDWEE+V EI SDIM+EQSPKRLFQVRGKLYELL+NC+PP ++LK L  E
Sbjct: 241 PFSSNQAIPPMDWEEYVSEICSDIMREQSPKRLFQVRGKLYELLINCIPPEIILKLLS-E 299

Query: 301 LLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG 354
           LLK+LD E+KHEVCHWAAYYEH+MR G KAIFHLEAFVAKFMSIYK FL+ATFG
Sbjct: 300 LLKKLDEELKHEVCHWAAYYEHRMRMGQKAIFHLEAFVAKFMSIYKAFLIATFG 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241031|ref|NP_198126.1| replication factor C subunit 3/5 [Arabidopsis thaliana] gi|18389268|gb|AAL67077.1| putative replication factor C [Arabidopsis thaliana] gi|20259637|gb|AAM14175.1| putative replication factor C [Arabidopsis thaliana] gi|332006337|gb|AED93720.1| replication factor C subunit 3/5 [Arabidopsis thaliana]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 291/354 (82%), Positives = 331/354 (93%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPK+LD+VIVH+DIAQ LKKLV+EQDCPHLLFYGP GSGKKTLIMALL+Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             AEKVKVEN+ WK+DAGSR IDLELTTLSS NHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN+P++E+IVKVLEF+AKKE LQLP GFA R+AEKSNRSLRRAILS ETCRVQ Y
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF  NQ I  MDWEE+V EIA+D+M+EQSPK+LFQVRGK+YELL+NC+PP V+LKRLL+E
Sbjct: 241 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE 300

Query: 301 LLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG 354
           LLK+LD+E+K EVCHWAAYYEH+MR G KAIFH+EAFVAKFMSIYK FL++TFG
Sbjct: 301 LLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812933|ref|XP_002874350.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] gi|297320187|gb|EFH50609.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 293/359 (81%), Positives = 332/359 (92%), Gaps = 5/359 (1%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPK+LD+VIVH+DIAQNLKKLVTEQDCPHLLFYGP GSGKKTLIMALL+Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             AEKVKVEN+ WK+DAGSR IDLELTTLSS NHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN+P++E+IVKVLEF+AKKE LQLP GFA R+AEKSNRSLRRAILS ETCRVQ Y
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLK----- 295
           PF  NQ I  MDWEE+V EIA+D+M+EQSPK+LFQVRGK+YELL+NC+PP V+LK     
Sbjct: 241 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKFMLSQ 300

Query: 296 RLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG 354
           RLL+ELLK+LD+E+K EVCHWAAYYEH+MR G KAIFH+EAFVAKFMSIYK FL++TFG
Sbjct: 301 RLLHELLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG 359

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569436|ref|XP_002525685.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223534985|gb|EEF36668.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 285/340 (83%), Positives = 318/340 (93%), Gaps = 1/340 (0%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQ++VH+DIAQNLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQIMVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P AEKVKVENKTWKIDAGSR ID+ELTTLSS++H+E+SP D GFQDRY+VQEVIK+MAKN
Sbjct: 61  PSAEKVKVENKTWKIDAGSRTIDVELTTLSSSHHIEMSPGDVGFQDRYIVQEVIKDMAKN 120

Query: 121 RP-IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
           RP +D KG++G+K+LVLNEVDKLSREAQHSLRRTMEKYSA CRLILCCNSSSKVTEAIRS
Sbjct: 121 RPLVDAKGRKGYKILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRS 180

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
           RCLN+RI++P+EEQIVKVLEFI KKEGLQLP GFA R+AEKSNRSLRRA+LSFETCRVQQ
Sbjct: 181 RCLNVRISAPSEEQIVKVLEFIGKKEGLQLPHGFAARVAEKSNRSLRRAVLSFETCRVQQ 240

Query: 240 YPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLY 299
           YPF  NQ IP MDWEE+V EIASDIM+EQSPK+LFQVRGKLYELL+NC+PP ++LKRL+ 
Sbjct: 241 YPFTSNQPIPPMDWEEYVSEIASDIMREQSPKKLFQVRGKLYELLINCIPPDIILKRLVN 300

Query: 300 ELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVA 339
           ELLK+LD E+KHEV HWAAYYEH+MR G KAIFHLEAFVA
Sbjct: 301 ELLKKLDEELKHEVSHWAAYYEHRMRLGQKAIFHLEAFVA 340

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
TAIR|locus:2180315	354	EMB2775 "EMBRYO DEFECTIVE 2775	1.0	1.0	0.774	4.8e-149
RGD|1306832	356	Rfc3 "replication factor C (ac	0.974	0.969	0.511	5e-92
UNIPROTKB|F1P3C0	356	RFC3 "Uncharacterized protein"	0.974	0.969	0.511	6.3e-92
UNIPROTKB|E2R7L0	356	RFC3 "Uncharacterized protein"	0.974	0.969	0.511	1.7e-91
MGI|MGI:1916513	356	Rfc3 "replication factor C (ac	0.974	0.969	0.505	1.7e-91
UNIPROTKB|P40938	356	RFC3 "Replication factor C sub	0.974	0.969	0.508	3.5e-91
UNIPROTKB|F1RSR4	356	RFC3 "Uncharacterized protein"	0.974	0.969	0.505	5.7e-91
UNIPROTKB|Q2TBV1	356	RFC3 "Replication factor C sub	0.974	0.969	0.505	9.3e-91
ZFIN|ZDB-GENE-020809-3	356	rfc3 "replication factor C (ac	0.974	0.969	0.508	1.2e-90
DICTYBASE|DDB_G0293702	347	rfc3 "replication factor C sub	0.974	0.994	0.477	3.1e-90

TAIR|locus:2180315 EMB2775 "EMBRYO DEFECTIVE 2775" [Arabidopsis thaliana (taxid:3702)]

 Score = 1455 (517.2 bits), Expect = 4.8e-149, P = 4.8e-149
 Identities = 274/354 (77%), Positives = 309/354 (87%)

Query:     1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             MLWVDKYRPK+LD+VIVH+DIAQ LKKLV+EQDCPHLLFYGP GSGKKTLIMALL+Q++G
Sbjct:     1 MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query:    61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
               AEKVKVEN+ WK+DAGSR IDLELTTLSS NHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct:    61 ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query:   121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
             RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEAI+SR
Sbjct:   121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query:   181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
             CLN+RIN+P++E+IVKVLEF+AKKE LQLP GFA R+AEKSNRSLRRAILS ETCRVQ Y
Sbjct:   181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240

Query:   241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXX 300
             PF  NQ I  MDWEE+V EIA+D+M+EQSPK+LFQVRGK+YE                  
Sbjct:   241 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE 300

Query:   301 XXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVATFG 354
                  D+E+K EVCHWAAYYEH+MR G KAIFH+EAFVAKFMSIYK FL++TFG
Sbjct:   301 LLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006260 "DNA replication" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

RGD|1306832 Rfc3 "replication factor C (activator 1) 3" [Rattus norvegicus (taxid:10116)]

 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 178/348 (51%), Positives = 250/348 (71%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L IR+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F ++Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                   
Sbjct:   240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIMKGLLSEL 299

Query:   302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
                 D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct:   300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005663 "DNA replication factor C complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006260 "DNA replication" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=IEA;ISO

GO:0046683 "response to organophosphorus" evidence=IEA;ISO

UNIPROTKB|F1P3C0 RFC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
 Identities = 178/348 (51%), Positives = 250/348 (71%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP  L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM LLR+++G 
Sbjct:     3 LWVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E+++  I A S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQS--ITAPSKK-KIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY A+CRLILCCNS SK+   I+SRC
Sbjct:   120 QLETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSISKIIGPIQSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L++R+ +P+ E I  VL  + KKEGL LP   A RLAEKS R+LR+A+L  E+CRVQQYP
Sbjct:   180 LSVRVPAPSIEDICHVLSSVCKKEGLNLPPELAQRLAEKSGRNLRKALLMCESCRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F  +Q IP MDWE ++ E A+ I+ +QSP+RL +VRG+LYE                   
Sbjct:   240 FSADQDIPEMDWEIYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPEIIMKGLLTEL 299

Query:   302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
                 D ++K EV   AA+YEH+++ G+KAI+HLEAFVAKFM+IYK F+
Sbjct:   300 LNNCDGQLKGEVAQMAAFYEHRLQLGSKAIYHLEAFVAKFMAIYKKFM 347

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0046683 "response to organophosphorus" evidence=IEA

UNIPROTKB|E2R7L0 RFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 178/348 (51%), Positives = 249/348 (71%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L +R+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F  +Q IP  DWE ++ E A+ I+ EQ+P+RL +VRG+LYE                   
Sbjct:   240 FTADQEIPETDWEVYLRETANAIVSEQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query:   302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
                 D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct:   300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1916513 Rfc3 "replication factor C (activator 1) 3" [Mus musculus (taxid:10090)]

 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 176/348 (50%), Positives = 250/348 (71%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L +R+ +P+ E I  VL  + +KEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F ++Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                   
Sbjct:   240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query:   302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
                 D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct:   300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005663 "DNA replication factor C complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006260 "DNA replication" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|P40938 RFC3 "Replication factor C subunit 3" [Homo sapiens (taxid:9606)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 177/348 (50%), Positives = 249/348 (71%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L +R+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                   
Sbjct:   240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query:   302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
                 D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct:   300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS

GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS

GO:0003677 "DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006260 "DNA replication" evidence=IDA;TAS

GO:0003689 "DNA clamp loader activity" evidence=TAS

GO:0016887 "ATPase activity" evidence=IDA

GO:0046683 "response to organophosphorus" evidence=IEP

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0000722 "telomere maintenance via recombination" evidence=TAS

GO:0000723 "telomere maintenance" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=TAS

GO:0006289 "nucleotide-excision repair" evidence=TAS

GO:0006297 "nucleotide-excision repair, DNA gap filling" evidence=TAS

GO:0032201 "telomere maintenance via semi-conservative replication" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

UNIPROTKB|F1RSR4 RFC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 176/348 (50%), Positives = 249/348 (71%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L Q+  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETNSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L +R+ +P+ E I  VL  + KKEGL LPS  A +LAEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAVRVPAPSIEDICHVLSTVCKKEGLSLPSQLARKLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                   
Sbjct:   240 FTVDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query:   302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
                 D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct:   300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q2TBV1 RFC3 "Replication factor C subunit 3" [Bos taurus (taxid:9913)]

 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 176/348 (50%), Positives = 248/348 (71%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L Q+  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L +R+ +P+ E I  VL  + KKEGL LP   A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                   
Sbjct:   240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query:   302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
                 D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct:   300 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

GO:0005634 "nucleus" evidence=IEA

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-020809-3 rfc3 "replication factor C (activator 1) 3" [Danio rerio (taxid:7955)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 177/348 (50%), Positives = 244/348 (70%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  LK LV   D PHLL YGP G+GKKT IM LLR+++G 
Sbjct:     3 LWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E+++  I   S+   LE+ T++S  H+E++PSDAG  DR V+QE+IK +A+++
Sbjct:    63 GVEKLRIEHQS--ITTPSKK-KLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              I +  +R FKV++L EVD+L+++AQH+LRRTMEKY A+CRLILCCNS+SKV   IRSRC
Sbjct:   120 QIQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L +R+  P+ E++  VL  + +KEGL LP   A ++AEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F  +Q IP  DWE ++ E A+ I+ +QSP+RL +VR +LYE                   
Sbjct:   240 FSPDQDIPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCISPEVIMKGLVTEL 299

Query:   302 XXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 349
                 D  +K EV   AAYYEH+++ GNKAI+HLEAFVAKFM+IYK F+
Sbjct:   300 LSNCDGHLKAEVAQMAAYYEHRLQLGNKAIYHLEAFVAKFMAIYKKFM 347

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

DICTYBASE|DDB_G0293702 rfc3 "replication factor C subunit 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 166/348 (47%), Positives = 245/348 (70%)

Query:     1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             MLW+DKY+P +LD++  H DI+ NLK ++   D PHLL YGP G+GKKT I+A+L++++G
Sbjct:     1 MLWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYG 60

Query:    61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             P A K+K++++T+K    S+NI  ++TT+SS  H+E++P +AG  DR V+Q +IKE+A++
Sbjct:    61 PNALKLKIDHRTFKHPTSSKNI--QITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQS 118

Query:   121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
              PID+     FK+++LNEVDKLS++AQH+LRRTMEKY+  CRLILCC+S++KV + I+SR
Sbjct:   119 PPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSR 178

Query:   181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
             CL IR+ +P++E+I KVL  +A  E   LPS  A  +A++S  +LR A++  E+ + +QY
Sbjct:   179 CLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQY 238

Query:   241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXX 300
             PF+  + +P +DWE ++ +I  D  +EQSP RL  VRGKLYE                  
Sbjct:   239 PFQSTE-LPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLE 297

Query:   301 XXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGF 348
                  D  +K E+ HWA+YYEH+ + G+K IFHLEAF+AKFMS+YK +
Sbjct:   298 IFKKLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKKY 345

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003689 "DNA clamp loader activity" evidence=ISS

GO:0031391 "Elg1 RFC-like complex" evidence=ISS

GO:0031389 "Rad17 RFC-like complex" evidence=ISS

GO:0006298 "mismatch repair" evidence=ISS

GO:0006272 "leading strand elongation" evidence=ISS

GO:0005663 "DNA replication factor C complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40938	RFC3_HUMAN	No assigned EC number	0.5344	0.9745	0.9691	yes	no
Q8R323	RFC3_MOUSE	No assigned EC number	0.5316	0.9745	0.9691	yes	no
Q54BN3	RFC3_DICDI	No assigned EC number	0.5086	0.9745	0.9942	yes	no
P38251	RFC5_YEAST	No assigned EC number	0.3817	0.9548	0.9548	yes	no
Q2TBV1	RFC3_BOVIN	No assigned EC number	0.5316	0.9745	0.9691	yes	no
Q0W037	RFCS_UNCMA	No assigned EC number	0.3039	0.8361	0.9192	yes	no
O94697	RFC5_SCHPO	No assigned EC number	0.4383	0.9661	0.9553	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	354
PRK00440	319	PRK00440, rfc, replication factor C small subunit;	6e-58
PRK12402	337	PRK12402, PRK12402, replication factor C small sub	1e-44
PLN03025	319	PLN03025, PLN03025, replication factor C subunit;	1e-34
PRK04132	846	PRK04132, PRK04132, replication factor C small sub	2e-27
PHA02544	316	PHA02544, 44, clamp loader, small subunit; Provisi	5e-26
pfam08542	89	pfam08542, Rep_fac_C, Replication factor C C-termi	4e-18
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-17
COG2812	515	COG2812, DnaX, DNA polymerase III, gamma/tau subun	8e-17
TIGR00678	188	TIGR00678, holB, DNA polymerase III, delta' subuni	6e-16
PRK14953	486	PRK14953, PRK14953, DNA polymerase III subunits ga	8e-14
PRK14962	472	PRK14962, PRK14962, DNA polymerase III subunits ga	6e-13
COG2256	436	COG2256, MGS1, ATPase related to the helicase subu	1e-12
TIGR02397	355	TIGR02397, dnaX_nterm, DNA polymerase III, subunit	2e-11
PRK13342	413	PRK13342, PRK13342, recombination factor protein R	2e-11
PRK14961	363	PRK14961, PRK14961, DNA polymerase III subunits ga	4e-11
PRK14970	367	PRK14970, PRK14970, DNA polymerase III subunits ga	6e-11
PRK07133	725	PRK07133, PRK07133, DNA polymerase III subunits ga	2e-10
pfam13177	161	pfam13177, DNA_pol3_delta2, DNA polymerase III, de	2e-10
PRK04132	846	PRK04132, PRK04132, replication factor C small sub	4e-10
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	4e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	6e-10
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	9e-10
PRK14956	484	PRK14956, PRK14956, DNA polymerase III subunits ga	2e-09
PRK06305	451	PRK06305, PRK06305, DNA polymerase III subunits ga	2e-09
PRK14964	491	PRK14964, PRK14964, DNA polymerase III subunits ga	3e-09
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-08
smart00382	148	smart00382, AAA, ATPases associated with a variety	3e-08
PRK14958	509	PRK14958, PRK14958, DNA polymerase III subunits ga	4e-08
PRK14957	546	PRK14957, PRK14957, DNA polymerase III subunits ga	6e-08
PRK06645	507	PRK06645, PRK06645, DNA polymerase III subunits ga	1e-07
PRK14969	527	PRK14969, PRK14969, DNA polymerase III subunits ga	7e-07
COG0470	230	COG0470, HolB, ATPase involved in DNA replication	1e-06
PRK05564	313	PRK05564, PRK05564, DNA polymerase III subunit del	2e-06
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	2e-06
PRK08769	319	PRK08769, PRK08769, DNA polymerase III subunit del	2e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-06
PRK06090	319	PRK06090, PRK06090, DNA polymerase III subunit del	4e-06
PRK08451	535	PRK08451, PRK08451, DNA polymerase III subunits ga	5e-06
PRK09112	351	PRK09112, PRK09112, DNA polymerase III subunit del	9e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
PRK14960	702	PRK14960, PRK14960, DNA polymerase III subunits ga	2e-05
PRK00080	328	PRK00080, ruvB, Holliday junction DNA helicase Ruv	3e-05
TIGR00602	637	TIGR00602, rad24, checkpoint protein rad24	4e-05
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	4e-05
COG2255	332	COG2255, RuvB, Holliday junction resolvasome, heli	4e-05
PRK06647	563	PRK06647, PRK06647, DNA polymerase III subunits ga	6e-05
pfam03215	490	pfam03215, Rad17, Rad17 cell cycle checkpoint prot	6e-05
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	6e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-05
PRK05896	605	PRK05896, PRK05896, DNA polymerase III subunits ga	7e-05
pfam05496	231	pfam05496, RuvB_N, Holliday junction DNA helicase	9e-05
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	2e-04
pfam13401	124	pfam13401, AAA_22, AAA domain	3e-04
PRK07471	365	PRK07471, PRK07471, DNA polymerase III subunit del	4e-04
PRK07940	394	PRK07940, PRK07940, DNA polymerase III subunit del	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
TIGR02903	615	TIGR02903, spore_lon_C, ATP-dependent protease, Lo	0.002
PRK14955	397	PRK14955, PRK14955, DNA polymerase III subunits ga	0.004

>gnl|CDD|234763 PRK00440, rfc, replication factor C small subunit; Reviewed

 Score =  190 bits (484), Expect = 6e-58
 Identities = 109/353 (30%), Positives = 178/353 (50%), Gaps = 58/353 (16%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+++  ++I + LK  V E++ PHLLF GPPG+GK T  +AL R+++G 
Sbjct: 6   IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG- 64

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                    + W+                  N +EL+ SD    D  V++  IKE A+  
Sbjct: 65  ---------EDWRE-----------------NFLELNASDERGID--VIRNKIKEFARTA 96

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           P+   G   FK++ L+E D L+ +AQ +LRRTME YS + R IL CN SSK+ + I+SRC
Sbjct: 97  PV---GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
              R +   +E + + L +IA+ EG+++       +   S   +R+AI +          
Sbjct: 154 AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL--------- 204

Query: 242 FKDNQAIPAMDW---EEFVFEIAS-----DI--MQEQSPKRLF-QVRGKLYELLLN-CVP 289
               QA  A      EE V++I       +I  M E +    F + R KL +L+++  + 
Sbjct: 205 ----QAAAATGKEVTEEAVYKITGTARPEEIREMIELALNGDFTEAREKLRDLMIDYGLS 260

Query: 290 PVVVLKRLLYELLKR-LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKF 341
              ++K++  E+    +  E+K E+       + ++  G      LEA +AK 
Sbjct: 261 GEDIIKQIHREVWSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKL 313

Length = 319

>gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed

 Score =  155 bits (395), Expect = 1e-44
 Identities = 76/258 (29%), Positives = 120/258 (46%), Gaps = 55/258 (21%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
            LW +KYRP  L+ ++   ++ + L + V   + PHLL  GPPGSGK   + AL R+++G
Sbjct: 3   PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ--------DRYV--- 109
                       W+                  N  E + +D   Q         R+    
Sbjct: 63  ----------DPWE-----------------NNFTEFNVADFFDQGKKYLVEDPRFAHFL 95

Query: 110 -------------VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156
                         + V+KE A  RP+       +K ++L+  + L  +AQ +LRR ME+
Sbjct: 96  GTDKRIRSSKIDNFKHVLKEYASYRPLSA----DYKTILLDNAEALREDAQQALRRIMEQ 151

Query: 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216
           YS +CR I+     SK+   IRSRCL +   +PT++++V VLE IA+ EG+         
Sbjct: 152 YSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLEL 211

Query: 217 LAEKSNRSLRRAILSFET 234
           +A  +   LR+AIL+ +T
Sbjct: 212 IAYYAGGDLRKAILTLQT 229

Length = 337

>gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional

 Score =  129 bits (325), Expect = 1e-34
 Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 33/206 (16%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP  LD ++ ++D    L+ +  + + P+L+  GPPG+GK T I+AL  ++ GP 
Sbjct: 3   WVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 62

Query: 63  A-EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             E V                            +EL+ SD    D  VV+  IK  A+ +
Sbjct: 63  YKEAV----------------------------LELNASDDRGID--VVRNKIKMFAQKK 92

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                G+   K+++L+E D ++  AQ +LRRTME YS + R  L CN+SSK+ E I+SRC
Sbjct: 93  VTLPPGRH--KIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGL 207
             +R +  ++++I+  L  + + E +
Sbjct: 151 AIVRFSRLSDQEILGRLMKVVEAEKV 176

Length = 319

>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional

 Score =  113 bits (283), Expect = 2e-27
 Identities = 86/267 (32%), Positives = 132/267 (49%), Gaps = 31/267 (11%)

Query: 93  NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR 152
           N +EL+ SD    +  V++E +KE A+ +PI   G   FK++ L+E D L+++AQ +LRR
Sbjct: 598 NFLELNASDERGIN--VIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRR 652

Query: 153 TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212
           TME +S++ R IL CN SSK+ E I+SRC   R     +E I K L +IA+ EGL+L   
Sbjct: 653 TMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEE 712

Query: 213 FATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMD---WEEFVFEIAS------- 262
               +   +   +RRAI                QA  A+D    +E VF +AS       
Sbjct: 713 GLQAILYIAEGDMRRAINIL-------------QAAAALDDKITDENVFLVASRARPEDI 759

Query: 263 -DIMQEQSPKRLFQVRGKLYELLLN-CVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAAY 319
            ++M         + R KL E+LL   +    VL ++  E+    +D   K E+      
Sbjct: 760 REMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHREVFNLPIDEPKKVELADKIGE 819

Query: 320 YEHKMRRGNKAIFHLEAFVAKFMSIYK 346
           Y  ++  G   +  LEA +A+F  + K
Sbjct: 820 YNFRLVEGANEMIQLEALLAQFTLMGK 846

Length = 846

>gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional

 Score =  105 bits (264), Expect = 5e-26
 Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 42/209 (20%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGP-PGSGKKTLIMALLRQVFG 60
           +W  KYRP T+D+ I+     +  K +V +   P++L + P PG+GK T+  AL  +V  
Sbjct: 10  MWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV-- 67

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
            GAE + V     +ID                                 V+  +   A  
Sbjct: 68  -GAEVLFVNGSDCRID--------------------------------FVRNRLTRFAST 94

Query: 121 RPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
             +   GK    V++++E D+L   +AQ  LR  ME YS +C  I+  N+ + + E +RS
Sbjct: 95  VSLTGGGK----VIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150

Query: 180 RCLNIRINSPT-EEQIVKVLEFIAKKEGL 207
           RC  I    PT EEQI  + + I + +G+
Sbjct: 151 RCRVIDFGVPTKEEQIEMMKQMIVRCKGI 179

Length = 316

>gnl|CDD|203973 pfam08542, Rep_fac_C, Replication factor C C-terminal domain

 Score = 77.9 bits (193), Expect = 4e-18
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 252 DW--EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR-LDAE 308
            W   E + EI   I++        + R  LYELL+  +    +LK+L   L++  +   
Sbjct: 1   GWPPPEDIKEILDSILKG----DFDEARETLYELLVEGISAEDILKQLHEVLIRLDIPDS 56

Query: 309 IKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKF 341
           +K E+    A  EH++  G K I  LEA +AKF
Sbjct: 57  LKLEIIKELAEIEHRLSDGAKEIIQLEALIAKF 89

This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A. Length = 89

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 81.9 bits (203), Expect = 3e-17
 Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 52/240 (21%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE--QDCPH--LLFYGPPGSGKKTLIMALLR 56
           M WV+KYRPKTL  V+ ++   + L++ +    +  P   LL YGPPG GK +L  AL  
Sbjct: 2   MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHAL-- 59

Query: 57  QVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116
                                 + +   E+        +EL+ SD   +   V++ V  E
Sbjct: 60  ----------------------ANDYGWEV--------IELNASD--QRTADVIERVAGE 87

Query: 117 MAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLRRTMEKYSASCRLILCCN---S 169
            A +  +   G R  K+++L+EVD +     R    ++   ++K  A   +IL  N    
Sbjct: 88  AATSGSL--FGARR-KLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYD 142

Query: 170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
            S     +R+ CL I     +   IV VL+ I +KEG++        +AE+S   LR AI
Sbjct: 143 PSLRE--LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAI 200

Length = 482

>gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

 Score = 80.9 bits (200), Expect = 8e-17
 Identities = 82/322 (25%), Positives = 128/322 (39%), Gaps = 59/322 (18%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGK----KTLIMALLRQVFG 60
           KYRPKT D V+  + + + L   +      H  LF GP G GK    + L  AL  +  G
Sbjct: 9   KYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN-G 67

Query: 61  PGAEKVKVENKTWKIDAGSRNIDL-ELTTLSSANHVELSPSDAGFQDRYVVQEV--IKEM 117
           P AE         +I+ G   ID+ E+   S                   V ++  I E 
Sbjct: 68  PTAEPCGKCISCKEINEG-SLIDVIEIDAAS----------------NTGVDDIREIIEK 110

Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
               P  ++G+  +KV +++EV  LS++A ++L +T+E+  +  + IL      K+   I
Sbjct: 111 VNYAP--SEGR--YKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA--ILSFETC 235
            SRC          E+I K L  I  KEG+ +     + +A  +  SLR A  +L     
Sbjct: 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLL----- 221

Query: 236 RVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLF------------QVRGKLYEL 283
                    +QAI A    E   E   D++     ++L             +    + EL
Sbjct: 222 ---------DQAI-AFGEGEITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINEL 271

Query: 284 LLNCVPPVVVLKRLLYELLKRL 305
           +     P   L+ LL  L   L
Sbjct: 272 IEEGKDPEAFLEDLLNFLRDLL 293

Length = 515

>gnl|CDD|233087 TIGR00678, holB, DNA polymerase III, delta' subunit

 Score = 74.6 bits (184), Expect = 6e-16
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 37/203 (18%)

Query: 35  PH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT---WKIDAGSRNIDLELTTLS 90
            H  LF GP G GK+ L +AL + +        +   +      I+AG            
Sbjct: 14  AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAG------------ 61

Query: 91  SANH---VELSPSDA--GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE 145
             NH     L P            V+E+++ +++  P ++    G +V+++ + ++++  
Sbjct: 62  --NHPDLHRLEPEGQSIKVDQ---VRELVEFLSR-TPQES----GRRVVIIEDAERMNEA 111

Query: 146 AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE 205
           A ++L +T+E+   +   IL   S  K+   IRSRC  +     +EE +++ L       
Sbjct: 112 AANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWL------I 165

Query: 206 GLQLPSGFATRLAEKSNRSLRRA 228
              +    A  L   +  S   A
Sbjct: 166 RQGISEEAAELLLALAGGSPGAA 188

This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau [DNA metabolism, DNA replication, recombination, and repair]. Length = 188

>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau; Provisional

 Score = 71.8 bits (176), Expect = 8e-14
 Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 30/231 (12%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLR-------Q 57
           KYRPK   +VI  + + + LK  V  Q   H  +F GP G+GK T+   L +       Q
Sbjct: 9   KYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQ 68

Query: 58  VFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM 117
              P  +    EN   +ID GS     +L  + +A       S+ G  D       +++ 
Sbjct: 69  EGEPCGK---CEN-CVEIDKGSF---PDLIEIDAA-------SNRGIDD----IRALRDA 110

Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
               PI  KGK  +KV +++E   L++EA ++L +T+E+       ILC     K+   I
Sbjct: 111 VSYTPI--KGK--YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTI 166

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
            SRC     + PT+EQI + L+ I  +E ++        LA+ S   +R A
Sbjct: 167 LSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDA 217

Length = 486

>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau; Provisional

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 22/232 (9%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVF---GP 61
           KYRPKT  +V+    + + +   + +    H  +F GP G+GK T+   L + +      
Sbjct: 7   KYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRK 66

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G E          ID G+    +EL   S+    E+                I++    R
Sbjct: 67  GVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRK--------------IRDAVGYR 112

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           P++ K    +KV +++EV  L++EA ++L +T+E+  +    +L   +  KV   I SRC
Sbjct: 113 PMEGK----YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRC 168

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
             I   + ++E I+K L+ +A+ EG+++     + +A++++  LR A+   E
Sbjct: 169 QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLE 220

Length = 472

>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 65/280 (23%), Positives = 110/280 (39%), Gaps = 69/280 (24%)

Query: 5   DKYRPKTLDQVIVHQDIAQN---LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           ++ RPK+LD+V+  + +      L++ V       ++ +GPPG+GK TL   +       
Sbjct: 16  ERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLI------- 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                          AG+ N   E           LS   +G +D   ++E+I+E  KNR
Sbjct: 69  ---------------AGTTNAAFE----------ALSAVTSGVKD---LREIIEEARKNR 100

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC----NSSSKVTEAI 177
                G+R   +L L+E+ + ++  Q +L   +E       +IL      N S ++  A+
Sbjct: 101 ---LLGRR--TILFLDEIHRFNKAQQDALLPHVENG----TIILIGATTENPSFELNPAL 151

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA-------TRLAEKSNRSLRRAIL 230
            SR     +   + E I K+L+     E   L              L   SN   RRA+ 
Sbjct: 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALN 211

Query: 231 SFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSP 270
             E             A+ A   E  + E+  +I+Q +S 
Sbjct: 212 LLELA-----------ALSAEPDEVLILELLEEILQRRSA 240

Length = 436

>gnl|CDD|233847 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 28/231 (12%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMAL-LRQVFGP 61
           KYRP+T + VI  + I Q LK  +      H  LF GP G+GK ++  I A  L    GP
Sbjct: 7   KYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGP 66

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP-SDAGFQDRYVVQEV--IKEMA 118
             E         +I++GS ++D+          +E+   S+ G      V ++  I +  
Sbjct: 67  DGEPCNECESCKEINSGS-SLDV----------IEIDAASNNG------VDDIREILDNV 109

Query: 119 KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
           K  P   K    +KV +++EV  LS+ A ++L +T+E+       IL      K+   I 
Sbjct: 110 KYAPSSGK----YKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATIL 165

Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           SRC          E IV+ L+ I  KEG+++       +A  ++ SLR A+
Sbjct: 166 SRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDAL 216

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis [DNA metabolism, DNA replication, recombination, and repair]. Length = 355

>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed

 Score = 64.0 bits (157), Expect = 2e-11
 Identities = 51/235 (21%), Positives = 99/235 (42%), Gaps = 54/235 (22%)

Query: 5   DKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           ++ RPKTLD+V+  + +    + L++++       ++ +GPPG+GK TL   +       
Sbjct: 4   ERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARII------- 56

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                            +   D             LS   +G +D   ++EVI+E  + R
Sbjct: 57  -----------------AGATDAPF--------EALSAVTSGVKD---LREVIEEARQRR 88

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC----NSSSKVTEAI 177
              + G+R   +L ++E+ + ++  Q +L   +E       + L      N S +V  A+
Sbjct: 89  ---SAGRR--TILFIDEIHRFNKAQQDALLPHVEDG----TITLIGATTENPSFEVNPAL 139

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEG---LQLPSGFATRLAEKSNRSLRRAI 229
            SR     +   +EE I ++L+   + +    ++L       LA  +N   RRA+
Sbjct: 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRAL 194

Length = 413

>gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.9 bits (153), Expect = 4e-11
 Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 40/237 (16%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
           K+RP+    +I  + I   +   ++     H  L  G  G GK T+              
Sbjct: 9   KWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIA------------- 55

Query: 65  KVKVENKTWKIDAGSRNIDLELTTL-----------SSANHVELSPSDAGFQDRYVVQEV 113
                    ++ A S N    +T+                 ++L   DA    R  V+E 
Sbjct: 56  ---------RLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAA--SRTKVEE- 103

Query: 114 IKEMAKN-RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172
           ++E+  N     +K +  FKV +++EV  LSR + ++L +T+E+     + IL      K
Sbjct: 104 MREILDNIYYSPSKSR--FKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161

Query: 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           + + I SRCL  ++   +EE+I   L++I  KE +         +A  ++ S+R A+
Sbjct: 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDAL 218

Length = 363

>gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 62/230 (26%), Positives = 97/230 (42%), Gaps = 30/230 (13%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP+T D V+    I   L   +        LLF GP G GK T    L R++  PG  
Sbjct: 10  KYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPG-- 67

Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD-RYVVQEVIKEMAKNRPI 123
                      D  + +    +  L +A       S+    D R ++ +V       R  
Sbjct: 68  ----------YDDPNEDFSFNIFELDAA-------SNNSVDDIRNLIDQV-------RIP 103

Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
              GK  +K+ +++EV  LS  A ++  +T+E+  A    IL      K+   I SRC  
Sbjct: 104 PQTGK--YKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI 161

Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
                 T + I + L  IA KEG++        +A+K++ +LR A+  F+
Sbjct: 162 FDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFD 211

Length = 367

>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau; Validated

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 41/239 (17%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALL---- 55
              KYRPKT D ++    I Q LK ++      H  LF GP G+GK ++  I A      
Sbjct: 8   LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67

Query: 56  --RQVFGPGAEKVKVENKTWKI---DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVV 110
               +  P  E ++  N +  I   DA S N                     G  +   +
Sbjct: 68  HKTDLLEPCQECIENVNNSLDIIEMDAASNN---------------------GVDE---I 103

Query: 111 QEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170
           +E + E  KN P  +K    +K+ +++EV  LS+ A ++L +T+E+       IL     
Sbjct: 104 RE-LIENVKNLPTQSK----YKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158

Query: 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
            K+   I SR         +E++IV  LEFI +KE +         +A+ S+ SLR A+
Sbjct: 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDAL 217

Length = 725

>gnl|CDD|221959 pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 19/176 (10%)

Query: 18  HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76
              + + LK  + +    H  LF GP G GK  L +   + +F         EN      
Sbjct: 2   QPKVIKLLKNSIKKNKLSHAYLFSGPDGVGKLELALEFAKALFC--------ENPQDDEP 53

Query: 77  AGSRNIDLELTTLSSANHVELSPSDA--GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVL 134
            G       +   +  + + + P            ++E+I+E +K +P   +GK+  KV 
Sbjct: 54  CGECKSCKRIENGNHPDVIIIEPEGKSIKIDQ---IRELIEEFSK-KPF--EGKK--KVY 105

Query: 135 VLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPT 190
           ++ + +K++  A ++L +T+E+   +   IL  ++ +K+   IRSRC  I     +
Sbjct: 106 IIEDAEKMTESAANALLKTLEEPPENTYFILLTSNPNKLLPTIRSRCQVINFKPLS 161

DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA. Length = 161

>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 3  WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGK 47
          WV+KYRP+ LD ++  + I + LK  V     PHLLF GPPG GK
Sbjct: 9  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 53

Length = 846

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 39/177 (22%)

Query: 16  IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75
           +  ++  + L++ +      +LL YGPPG+GK TL  A+  ++F PG             
Sbjct: 1   VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPG------------- 47

Query: 76  DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLV 135
                           A  + L+ SD    +  VV E+          +   K    VL 
Sbjct: 48  ----------------APFLYLNASD--LLEGLVVAELFGHFLVRLLFELAEKAKPGVLF 89

Query: 136 LNEVDKLSREAQHSLRRTMEKYS------ASCRLILCCN--SSSKVTEAIRSRCLNI 184
           ++E+D LSR AQ++L R +E  +       + R+I   N      +  A+  R    
Sbjct: 90  IDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIR 146

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.2 bits (146), Expect = 6e-10
 Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 23/228 (10%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVF----G 60
           K+R +T  +++  + + Q L+  + E    H  LF GP G GK +    L + V      
Sbjct: 9   KWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTND 68

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P             I  G   +D+     +S   V+    DA           I E  + 
Sbjct: 69  PKGRPCGTCEMCRAIAEG-SAVDVIEMDAASHTSVD----DA---------REIIERVQF 114

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RP   +    +KV +++EV  LS  A ++L +T+E+       IL      KV   I SR
Sbjct: 115 RPALAR----YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR 170

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
           C     +  +   +   L  IA  EG+ L  G    +A  +  S+R A
Sbjct: 171 CQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDA 218

Length = 585

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 59.7 bits (144), Expect = 9e-10
 Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 24/229 (10%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RPKT   ++  + + + L+  + E    H  L  G  G GK T+   L + +      
Sbjct: 9   KWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKN 120
             E   V     +IDAG R +DL          +E+ + S+ G  +   ++EV+ E A+ 
Sbjct: 69  HGEPCGVCQSCTQIDAG-RYVDL----------LEIDAASNTGIDN---IREVL-ENAQY 113

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
            P  T GK  +KV +++EV  LS+ A +++ +T+E+     + IL      KV   + SR
Sbjct: 114 AP--TAGK--YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           CL   + + T +Q+   L  +   E +         L   +  S+R A+
Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDAL 218

Length = 709

>gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 21/230 (9%)

Query: 6   KYRPKTLDQVIVHQDIA-QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGA 63
           KYRP+    VI HQD+A   L+  +      H  +F+GP G GK T+   L        A
Sbjct: 11  KYRPQFFRDVI-HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARIL--------A 61

Query: 64  EKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRP 122
           +++  EN             LE+T   S++ +E+ + S+ G ++       I+E+  N  
Sbjct: 62  KRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIEN-------IRELRDNVK 114

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
               G + +KV +++EV  L+ ++ ++L +T+E+  A    IL      K+ E I SRC 
Sbjct: 115 FAPMGGK-YKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ 173

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232
           +          +    E + K E +Q        +A+K + S+R  +LSF
Sbjct: 174 DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRD-MLSF 222

Length = 484

>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 21/227 (9%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP+T  +++    +   LK  +      H  LF G  G+GK TL      ++F   A+
Sbjct: 10  KYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLA-----RIF---AK 61

Query: 65  KVKVENKTWKIDAGSR-NIDLELTTLSSANHVELS-PSDAGFQD-RYVVQEVIKEMAKNR 121
            +  +N T   +  ++     E+++ +S + +E+   S  G +D R + + V+   +K+R
Sbjct: 62  ALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSR 121

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    +K+ +++EV  L++EA +SL +T+E+     +  L      K+   I SRC
Sbjct: 122 ---------YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRC 172

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
             + +    EE I+  L  IAK+EG++        +A  +  SLR A
Sbjct: 173 QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDA 219

Length = 451

>gnl|CDD|237870 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 42/242 (17%)

Query: 6   KYRPKTLDQVIVHQDI-------AQNLKKLVTEQDCPHLLFYGPPGSGKKTL--IMAL-L 55
           KYRP +    +V QD+       A  L K+        +L  G  G GK T   I++L L
Sbjct: 6   KYRPSSFKD-LVGQDVLVRILRNAFTLNKIPQS-----ILLVGASGVGKTTCARIISLCL 59

Query: 56  RQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH---VEL-SPSDAGFQDRYVVQ 111
               GP ++             G+ +      ++ ++NH   +E+ + S+    D  V+ 
Sbjct: 60  NCSNGPTSDP-----------CGTCH---NCISIKNSNHPDVIEIDAASNTSVDDIKVIL 105

Query: 112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171
           E    +    PI +K    FKV +++EV  LS  A ++L +T+E+ +   + IL      
Sbjct: 106 ENSCYL----PISSK----FKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVK 157

Query: 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
           K+   I SRC    +     +++V+ L  IAKKE ++        +AE S+ S+R A+  
Sbjct: 158 KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFL 217

Query: 232 FE 233
            E
Sbjct: 218 LE 219

Length = 491

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 24/233 (10%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKT---LIMALLRQVFGP 61
           KYRP+T   +   + +++ L+  +      H  LF G  G GK +   ++   L    G 
Sbjct: 9   KYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGL 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKN 120
            AE   V     +I  G            S +  E+   S+ G  D   ++E ++E  K 
Sbjct: 69  TAEPCNVCPPCVEITEGR-----------SVDVFEIDGASNTGVDD---IRE-LRENVKY 113

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
            P     +  +K+ +++EV  LS  A ++L +T+E+     + I       KV   I SR
Sbjct: 114 LP----SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
           C          ++IV  L +IA +EG+ +       +A K + S+R ++ + +
Sbjct: 170 CQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLD 222

Length = 576

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 52.0 bits (124), Expect = 3e-08
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 28/159 (17%)

Query: 36  HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95
            +L  GPPGSGK TL  AL R++  PG   + +            + +  L  +     +
Sbjct: 4   VILIVGPPGSGKTTLARALARELGPPGGGVIYI------------DGEDILEEVLDQLLL 51

Query: 96  ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR--- 152
            +           +   +   +A+    D        VL+L+E+  L    Q +L     
Sbjct: 52  IIVGGKKASGSGELRLRLALALARKLKPD--------VLILDEITSLLDAEQEALLLLLE 103

Query: 153 -----TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRI 186
                 + K   +  +IL  N    +  A+  R  + RI
Sbjct: 104 ELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRI 142

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|184922 PRK14958, PRK14958, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.4 bits (130), Expect = 4e-08
 Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 18/226 (7%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           K+RP+   +VI    + + L   + +Q   H  LF G  G GK T+   L          
Sbjct: 9   KWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRIL---------- 58

Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP-I 123
             K  N    + A   N       +      +L   DA  + +    E  +E+  N P  
Sbjct: 59  -AKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKV---EDTRELLDNIPYA 114

Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
            TKG+  FKV +++EV  LS  + ++L +T+E+  +  + IL      K+   + SRCL 
Sbjct: 115 PTKGR--FKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQ 172

Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
             +      QI    + + K+E ++  +     LA  +N S+R A+
Sbjct: 173 FHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDAL 218

Length = 509

>gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.9 bits (129), Expect = 6e-08
 Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 28/274 (10%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP++  +V   Q    +L   +  Q   H  LF G  G GK TL   L + +      
Sbjct: 9   KYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGV 68

Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN-RPI 123
             +  NK     A + N  ++L  + +A+             R  V+E  KE+  N + +
Sbjct: 69  TAEPCNKCENCVAINNNSFIDLIEIDAAS-------------RTGVEET-KEILDNIQYM 114

Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
            ++G+  +KV +++EV  LS+++ ++L +T+E+     + IL      K+   I SRC+ 
Sbjct: 115 PSQGR--YKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172

Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI------LSFETCRV 237
           + +   ++  I   L+ I  KE +         +A  +  SLR A+      +SF    +
Sbjct: 173 LHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGEL 232

Query: 238 QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPK 271
           +Q   K  Q +  +D EE V+ I + I+ +  PK
Sbjct: 233 KQAQIK--QMLGIIDSEE-VYSIINAII-DNDPK 262

Length = 546

>gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 16/230 (6%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLK-KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +  KYRP    ++   + + + L   ++ ++     L  G  G GK T    + + V   
Sbjct: 11  FARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV--- 67

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV--IKEMAK 119
               +  EN T K      N      + ++ NH ++   DA    +  V ++  I E A+
Sbjct: 68  NCSALITENTTIKTCEQCTNC----ISFNNHNHPDIIEIDAA--SKTSVDDIRRIIESAE 121

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
            +P+  K     K+ +++EV  LS+ A ++L +T+E+       I       K+   I S
Sbjct: 122 YKPLQGK----HKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIIS 177

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           RC    +   + E+I K+LE+I K+E L+        +A KS  S R A+
Sbjct: 178 RCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAV 227

Length = 507

>gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 22/228 (9%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMA-LLRQVFGP 61
           K+RPK+  +++  + + + L   + +Q   H  LF G  G GK TL  I+A  L    G 
Sbjct: 9   KWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGV 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +ID+G R +DL          +E+   DA    +      + + A+  
Sbjct: 69  TATPCGVCSACLEIDSG-RFVDL----------IEV---DAASNTQVDAMRELLDNAQYA 114

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           P  T+G+  FKV +++EV  LS+ A +++ +T+E+     + IL      K+   + SRC
Sbjct: 115 P--TRGR--FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 170

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   +       IV  L+ I ++E +   +     LA  +  S+R A+
Sbjct: 171 LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDAL 218

Length = 527

>gnl|CDD|223546 COG0470, HolB, ATPase involved in DNA replication [DNA replication, recombination, and repair]

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 40/195 (20%), Positives = 62/195 (31%), Gaps = 18/195 (9%)

Query: 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216
              + R IL  N  SK+   IRSRC  IR   P        LE IA  E   L       
Sbjct: 41  PPKNTRFILITNDPSKILPTIRSRCQRIRFKPP------SRLEAIAWLEDQGL-----EE 89

Query: 217 LAEKSNRSLRRAILSFETCRVQQ------YPFKDNQAIPAMDWEEFVFEIASDIMQEQSP 270
           +A  +    R+AI   +     +      Y         ++       E+      +   
Sbjct: 90  IAAVAEGDARKAINPLQALAALEIGEESIYEALLLALPESLAQLA-ALELLKLAENKFLE 148

Query: 271 KRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKA 330
                    L E LL       + + LL      +  E   E+    A    ++  G  A
Sbjct: 149 ALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQARRRLLDGLLA 208

Query: 331 IFHLEAFVAKFMSIY 345
           +  LE  +A+ + + 
Sbjct: 209 LIQLENLLAELLLLQ 223

Length = 230

>gnl|CDD|180132 PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 40/191 (20%), Positives = 90/191 (47%), Gaps = 33/191 (17%)

Query: 15  VIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73
           +I H++I   +K  + +    H  +  G  G GK  L   +  ++ G   ++  V+   +
Sbjct: 6   IIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEF 65

Query: 74  KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKV 133
           K     ++I ++                        ++ +I+E+ K +P +  G +  KV
Sbjct: 66  KP-INKKSIGVDD-----------------------IRNIIEEVNK-KPYE--GDK--KV 96

Query: 134 LVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ 193
           +++   +K++ +AQ++  +T+E+      +IL C +  ++ + I+SRC   ++N  ++E+
Sbjct: 97  IIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEE 156

Query: 194 IVKVLEFIAKK 204
           I K   FI+ K
Sbjct: 157 IEK---FISYK 164

Length = 313

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 30/232 (12%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQV---FGP 61
           +YRP+T  +V   + +   L +   E    P  LF G  G GK T+     + +     P
Sbjct: 9   RYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAP 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL----SPSDAGFQDRYVVQEVIKEM 117
             E      +  K+  G               HV++      S+ G  D   ++E I   
Sbjct: 69  TGEPCNTCEQCRKVTQG--------------MHVDVVEIDGASNRGIDDAKRLKEAIGYA 114

Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
               P++ +    +KV +++E   L+REA ++L +T+E+  A    +L      K    I
Sbjct: 115 ----PMEGR----YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
            SRC +      +E  +   L  +  +EG+         +A ++  S+R ++
Sbjct: 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSM 218

Length = 624

>gnl|CDD|181551 PRK08769, PRK08769, DNA polymerase III subunit delta'; Validated

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 37  LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96
           LL  GP G GK+ + +AL   V   G +      +T ++ A   + DL+L        V 
Sbjct: 29  LLICGPEGLGKRAVALALAEHVLASGPDPA-AAQRTRQLIAAGTHPDLQL--------VS 79

Query: 97  LSPSDAGFQDRY-VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME 155
             P+  G + R  +V E ++E+++   + T      +V++++  D ++R A ++L +T+E
Sbjct: 80  FIPNRTGDKLRTEIVIEQVREISQKLAL-TPQYGIAQVVIVDPADAINRAACNALLKTLE 138

Query: 156 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ 193
           + S    L L     +++   IRSRC  +    P   +
Sbjct: 139 EPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHE 176

Length = 319

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 61/244 (25%), Positives = 97/244 (39%), Gaps = 45/244 (18%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALLRQVFGPG 62
           KYRP T + V+  + +   LK  +      H  LF GP G GK T   I A         
Sbjct: 10  KYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLT 69

Query: 63  AE----------KVKVENKTWKI---DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV 109
           A+              E +++ I   DA S N   ++  L     +E        Q R  
Sbjct: 70  ADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNL-----IE--------QVRIP 116

Query: 110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169
            Q               GK  +K+ +++EV  LS+ A ++  +T+E+  +    IL    
Sbjct: 117 PQ--------------IGK--YKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160

Query: 170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
             K+   I SRC     N      IV  L+++A KEG+         +A+K++  +R A+
Sbjct: 161 KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDAL 220

Query: 230 LSFE 233
             F+
Sbjct: 221 SIFD 224

Length = 614

>gnl|CDD|180394 PRK06090, PRK06090, DNA polymerase III subunit delta'; Validated

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP 189
           G+++ V+   D ++  A ++L +T+E+ + +C  +L  ++  ++   I SRC    +  P
Sbjct: 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPP 167

Query: 190 TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS 221
           +  Q ++ L    K +G+ +P+ +A +L   S
Sbjct: 168 STAQAMQWL----KGQGITVPA-YALKLNMGS 194

Length = 319

>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 63/242 (26%), Positives = 100/242 (41%), Gaps = 56/242 (23%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGK--------KTLIMALLR 56
           KYRPK  D++I  + +++ L   +      H  LF G  GSGK        + L+     
Sbjct: 7   KYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQ-- 64

Query: 57  QVFGPGAEKVKV--------ENKTWKI---DAGS-RNIDLELTTLSSANHVELSPSDAGF 104
              GP +             EN+   I   DA S R ID                     
Sbjct: 65  ---GPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGID--------------------- 100

Query: 105 QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLI 164
            D   ++E+I E  K +P  +  +  FK+ +++EV  L++EA ++L +T+E+  +  + I
Sbjct: 101 -D---IRELI-EQTKYKP--SMAR--FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151

Query: 165 LCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS 224
           L      K+   I SR  + R     +  I+  L+ I +KEG+         LA   N S
Sbjct: 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGS 211

Query: 225 LR 226
           LR
Sbjct: 212 LR 213

Length = 535

>gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 25/234 (10%)

Query: 9   PKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVK 67
           P    ++  H++    L +   E    H LLF GP G GK TL   L   +     +  +
Sbjct: 19  PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHP-DPAE 77

Query: 68  VENKTWKIDAGS---RNIDLELTTLSSANHVELS-PSD---AGFQDRYVVQEVIKEMAK- 119
                   D  S   R I       +  N + ++ P D     F+    V E I+ +   
Sbjct: 78  APETLADPDPASPVWRQI----AQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHF 132

Query: 120 -NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
            ++   T G   +++++++  D ++R A +++ +T+E+  A    IL  +SS ++   IR
Sbjct: 133 LSQ---TSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIR 189

Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR--LAEKSNRSLRRAIL 230
           SRC  I +    ++++ K L  +    G    S       L ++S  S+R+A+L
Sbjct: 190 SRCQPISLKPLDDDELKKALSHL----GSSQGSDGEITEALLQRSKGSVRKALL 239

Length = 351

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 33/236 (13%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALLRQVFGPG 62
           K+RP+    ++  + + + L   + +Q   H  LF G  G GK TL  I+A      G  
Sbjct: 9   KWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGAD 68

Query: 63  ------AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116
                 A+         +IDAG R +D          ++E+   DA   +R V      E
Sbjct: 69  GEGGITAQPCGQCRACTEIDAG-RFVD----------YIEM---DAA-SNRGV-----DE 108

Query: 117 MAK--NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
           MA+  ++ +       FKV +++EV  L+  A +++ +T+E+     + IL      K+ 
Sbjct: 109 MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168

Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL-AEKSNRSLRRAI 229
             + SRCL   +       IV  L+ I  +EG+      A RL A+ +  S+R A+
Sbjct: 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDAL 223

Length = 700

>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 26/230 (11%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP+  ++++    +++ L   +      H  LF G  G GK T+              
Sbjct: 8   KYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTI-------------- 53

Query: 65  KVKVENKTWKIDAGSRNIDLEL-TTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKN 120
             ++  K    + G  +   E+  T  + N    ++L   DA  + +    E  +E+  N
Sbjct: 54  -ARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKV---EDTRELLDN 109

Query: 121 RP-IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
            P   T+G+  FKV +++EV  LS  + ++L +T+E+     + +       K+   + S
Sbjct: 110 VPYAPTQGR--FKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS 167

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           RCL   +     ++I K L  I +KE +        ++AE +  SLR A+
Sbjct: 168 RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDAL 217

Length = 702

>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed

 Score = 45.1 bits (108), Expect = 3e-05
 Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 16/72 (22%)

Query: 8  RPKTLDQVIVHQDIAQNLK------KLVTEQ-DCPHLLFYGPPGSGKKTL--IMAL---- 54
          RPK+LD+ I  + + +NLK      K   E  D  H+L YGPPG GK TL  I+A     
Sbjct: 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALD--HVLLYGPPGLGKTTLANIIANEMGV 77

Query: 55 -LRQVFGPGAEK 65
           +R   GP  EK
Sbjct: 78 NIRITSGPALEK 89

Length = 328

>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 2   LWVDKYRPKTLDQVIVHQ----DIAQNLKKLVTEQDCPH--LLFYGPPGSGKKTLIMAL 54
            WV+KY+P+T  ++ VH+    ++   LK  V E   P   LL  GP G GK T I  L
Sbjct: 73  PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENA-PKRILLITGPSGCGKSTTIKIL 130

All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 637

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 35/240 (14%)

Query: 8   RPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALLRQVFGPGAE 64
           RP T D+V+  + + + L   + +    H  LF GP G GK T   ++A+     G   +
Sbjct: 9   RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPK 68

Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
                     +  G+    LE+   +S N VE         D   V++ ++E     P+ 
Sbjct: 69  PCGECESCLAVRRGAHPDVLEIDA-ASNNSVE---------D---VRD-LREKVLLAPL- 113

Query: 125 TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184
              + G KV +L+E   +S+ A ++L +T+E+       IL      K+   I SR  + 
Sbjct: 114 ---RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHF 170

Query: 185 RINSPTEEQIVKVLEFIAKKEG-------LQLPSGFATRLAEKSNR---SLRRAILSFET 234
           R    TEE+I   L  + + EG       LQL      RLA+ + R   SL   +L+  T
Sbjct: 171 RFRRLTEEEIAGKLRRLLEAEGREAEPEALQL----VARLADGAMRDAESLLERLLALGT 226

Length = 504

>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 16/72 (22%)

Query: 8  RPKTLDQVIVHQDIAQNLK------KLVTEQ-DCPHLLFYGPPGSGKKTL--IMAL---- 54
          RPKTLD+ I  + + + L+      K   E  D  H+L +GPPG GK TL  I+A     
Sbjct: 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALD--HVLLFGPPGLGKTTLAHIIANELGV 78

Query: 55 -LRQVFGPGAEK 65
           L+   GP  EK
Sbjct: 79 NLKITSGPALEK 90

Length = 332

>gnl|CDD|235845 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 30/236 (12%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMAL---LRQVFGP 61
           K RP+  + +     + + LK  +      +  +F GP G GK +   A    L  V GP
Sbjct: 9   KRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGP 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS-PSDAGFQD-RYVVQEVIKEMAK 119
                   +    ID  +           S + +E+   S+   QD R + +E++   A 
Sbjct: 69  TPMPCGECSSCKSIDNDN-----------SLDVIEIDGASNTSVQDVRQIKEEIMFPPAS 117

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
           +R         ++V +++EV  LS  A ++L +T+E+       I       K+   I+S
Sbjct: 118 SR---------YRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168

Query: 180 RC--LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
           RC   N R+ S   E+I  +L+ +  ++ ++        +A KS  S+R A   F+
Sbjct: 169 RCQHFNFRLLSL--EKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFD 222

Length = 563

>gnl|CDD|217429 pfam03215, Rad17, Rad17 cell cycle checkpoint protein

 Score = 44.3 bits (104), Expect = 6e-05
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 2  LWVDKYRPKTLDQVIVHQ----DIAQNLKKLVTEQDCPHLLFY--GPPGSGKKTLIMAL 54
          LW +KY+P+  D++ +H+    ++   LK +  E +   L+    GP G GK T +  L
Sbjct: 8  LWTEKYKPRRRDELAIHKKKIAEVDHWLKAVFLESN-KQLILLLTGPSGCGKSTTVKVL 65

Length = 490

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 55/169 (32%)

Query: 37  LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96
           LL YGPPG+GK TL  A+ ++                                  A  +E
Sbjct: 1   LLLYGPPGTGKTTLAKAVAKE--------------------------------LGAPFIE 28

Query: 97  LSPSDAGFQDRYVVQEVIKEMAKN--RPIDTKGKRGFKVLVLNEVDKL-----------S 143
           +S S+       +V + + E  K      +   K    V+ ++E+D L           S
Sbjct: 29  ISGSE-------LVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSES 81

Query: 144 REAQHSLRRTMEKYSASCR---LILCCNSSSKVTEAIRSRCLNIRINSP 189
           R   + L   ++ +++S     +I   N   K+  A+     +  I  P
Sbjct: 82  RRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLRGRFDRIIEFP 130

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 67/238 (28%), Positives = 110/238 (46%), Gaps = 37/238 (15%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALLRQVFGPG 62
           KYRP++  +++  + + Q L   +T+Q   H  LF G  G GK T+  I+A      GP 
Sbjct: 9   KYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPD 68

Query: 63  ------AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV--I 114
                 A    V      ID+G R +D   T L +A       S+ G      V EV  +
Sbjct: 69  GQGGITATPCGVCQACRDIDSG-RFVD--YTELDAA-------SNRG------VDEVQQL 112

Query: 115 KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
            E A  +P+  +    FKV +++EV  L+  A +++ +T+E+     + +L      KV 
Sbjct: 113 LEQAVYKPVQGR----FKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168

Query: 175 EAIRSRCL--NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR-SLRRAI 229
             + SRCL  N+R  +P  E +++ L  +   E +      A RL  ++ R S+R A+
Sbjct: 169 VTVLSRCLQFNLRPMAP--ETVLEHLTQVLAAENVPAEPQ-ALRLLARAARGSMRDAL 223

Length = 618

>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 20/224 (8%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP    Q+I  + I + L   +      H  +F GP G GK ++            A+
Sbjct: 9   KYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIF--------AK 60

Query: 65  KVKVENKTWKIDA-GSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRP 122
            +   N     D   S ++   + T  S + VEL + S+ G  +   ++ +I +     P
Sbjct: 61  AINCLNPK-DGDCCNSCSVCESINTNQSVDIVELDAASNNGVDE---IRNII-DNINYLP 115

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
              K    +KV +++E   LS  A ++L +T+E+       I       K+   I SRC 
Sbjct: 116 TTFK----YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQ 171

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226
                     ++ ++L+ IAKKE +++      ++A+ ++ SLR
Sbjct: 172 RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLR 215

Length = 605

>gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus

 Score = 42.8 bits (102), Expect = 9e-05
 Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 16/72 (22%)

Query: 8  RPKTLDQVIVHQDIAQNLK------KLVTEQ-DCPHLLFYGPPGSGKKTL--IMAL---- 54
          RP+ LD+ I  + + +NLK      K   E  D  H+L YGPPG GK TL  I+A     
Sbjct: 19 RPRRLDEYIGQEKVKENLKIFIEAAKKRGEALD--HVLLYGPPGLGKTTLANIIANEMGV 76

Query: 55 -LRQVFGPGAEK 65
           +R   GP  EK
Sbjct: 77 NIRITSGPALEK 88

The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Length = 231

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 5/111 (4%)

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RP  ++G+  FKV +++EV  LSR + ++L +T+E+     + +L      K+   + SR
Sbjct: 114 RP--SRGR--FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
           CL   + S T+++I   L  I  +E L   +   T LA+ +N S+R A LS
Sbjct: 170 CLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDA-LS 219

Length = 944

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 23/136 (16%)

Query: 32  QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK-TWKIDAGSRNIDLELTTLS 90
           +     +  G  GSGK TL+  L RQ+       V+  +  T K        DL L  + 
Sbjct: 2   RGAGIGVLTGESGSGKTTLLRRLARQLPNRRVVYVEAPSLGTPK--------DL-LRKIL 52

Query: 91  SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSL 150
            A  + LS             E+++ +     +D   +RG  +L+++E   LS EA   L
Sbjct: 53  RALGLPLSGGTT--------AELLEAI-----LDALKRRGRPLLIIDEAQHLSLEALEEL 99

Query: 151 RRTMEKYSASCRLILC 166
           R   +      ++IL 
Sbjct: 100 RDLYDLSEKGIQVILV 115

Length = 124

>gnl|CDD|236022 PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 30/207 (14%)

Query: 38  LFYGPPGSGKKTLIMALLRQVF---GPGAEKVKVENKTWKIDAG---SRNIDLELTTLSS 91
           L  GP G GK TL   + R +     PG +       +  ID     +R I       + 
Sbjct: 45  LIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI----AAGAH 100

Query: 92  AN--HVELSPSDAG--FQDRYVVQEVIKEMAKNRPID-----TKGKRGFKVLVLNEVDKL 142
                +E S ++ G   +    V EV       R +      T  + G++V++++  D++
Sbjct: 101 GGLLTLERSWNEKGKRLRTVITVDEV-------RELISFFGLTAAEGGWRVVIVDTADEM 153

Query: 143 SREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIA 202
           +  A ++L + +E+  A    +L  ++ +++   IRSRC  +R+     E ++  L    
Sbjct: 154 NANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALA--- 210

Query: 203 KKEGLQLPSGFATRLAEKSNRSLRRAI 229
              G  LP      LA  +  S+ RA+
Sbjct: 211 -AAGPDLPDDPRAALAALAEGSVGRAL 236

Length = 365

>gnl|CDD|236134 PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 114 IKEM------AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC 167
           + E+      A  RP  + G+  ++++V+ + D+L+  A ++L + +E+       +LC 
Sbjct: 99  VDEVRELVTIAARRP--STGR--WRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154

Query: 168 NSSSKVTEAIRSRCLNIRINSPTEEQIVKVL 198
            S   V   IRSRC ++ + +P+ E + +VL
Sbjct: 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVL 185

Length = 394

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 6  KYRPKTLDQVIVHQD-IAQNLKK-LVTEQDCPHLLFYGPPGSGK 47
          KYRP+  D++ V Q+ IA  LK  L++ +  P  LF GP G+GK
Sbjct: 9  KYRPQRFDEL-VGQEAIATTLKNALISNRIAPAYLFTGPRGTGK 51

Length = 620

>gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 13/79 (16%)

Query: 8   RPKTLDQVIVHQDIAQNLKKLVTEQDCP---HLLFYGPPGSGKKTLIMALLRQV------ 58
           RP+   + IV Q+ A  +K L+ +   P   H++ YGPPG GK T     L +       
Sbjct: 149 RPRAFSE-IVGQERA--IKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHT 205

Query: 59  -FGPGAEKVKVENKTWKID 76
            F   A  V+V+  T + D
Sbjct: 206 PFAEDAPFVEVDGTTLRWD 224

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC [Protein fate, Degradation of proteins, peptides, and glycopeptides, Cellular processes, Sporulation and germination]. Length = 615

>gnl|CDD|184919 PRK14955, PRK14955, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 126 KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185
           KG+  ++V +++EV  LS  A ++  +T+E+       I       K+   I SRC    
Sbjct: 125 KGR--YRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFN 182

Query: 186 INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
                 E+I + L+ I + EG+ + +     +  K+  S+R A
Sbjct: 183 FKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDA 225

Length = 397

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	354
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	100.0
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	100.0
PLN03025	319	replication factor C subunit; Provisional	100.0
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	100.0
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK00440	319	rfc replication factor C small subunit; Reviewed	100.0
PRK12402	337	replication factor C small subunit 2; Reviewed	100.0
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	100.0
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	100.0
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	100.0
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	100.0
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	100.0
COG2256	436	MGS1 ATPase related to the helicase subunit of the	100.0
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	100.0
PHA02544	316	44 clamp loader, small subunit; Provisional	100.0
PRK04132	846	replication factor C small subunit; Provisional	100.0
PRK04195	482	replication factor C large subunit; Provisional	100.0
KOG0990	360	consensus Replication factor C, subunit RFC5 [Repl	100.0
PRK05564	313	DNA polymerase III subunit delta'; Validated	100.0
KOG2028	554	consensus ATPase related to the helicase subunit o	100.0
PRK13342	413	recombination factor protein RarA; Reviewed	100.0
PRK07993	334	DNA polymerase III subunit delta'; Validated	100.0
PRK07940	394	DNA polymerase III subunit delta'; Validated	100.0
PRK09112	351	DNA polymerase III subunit delta'; Validated	100.0
PRK07399	314	DNA polymerase III subunit delta'; Validated	100.0
PRK13341	725	recombination factor protein RarA/unknown domain f	100.0
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.98
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.98
PRK06871	325	DNA polymerase III subunit delta'; Validated	99.98
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.97
PRK08769	319	DNA polymerase III subunit delta'; Validated	99.97
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.97
PRK06964	342	DNA polymerase III subunit delta'; Validated	99.97
PRK06090	319	DNA polymerase III subunit delta'; Validated	99.97
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.97
KOG1969	877	consensus DNA replication checkpoint protein CHL12	99.96
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	99.95
PRK07276	290	DNA polymerase III subunit delta'; Validated	99.95
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.95
PRK05917	290	DNA polymerase III subunit delta'; Validated	99.95
PRK08699	325	DNA polymerase III subunit delta'; Validated	99.94
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.93
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.93
PRK07132	299	DNA polymerase III subunit delta'; Validated	99.93
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	99.92
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.92
PRK05818	261	DNA polymerase III subunit delta'; Validated	99.92
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.91
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	99.89
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.89
PRK08084	235	DNA replication initiation factor; Provisional	99.88
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	99.87
PRK06893	229	DNA replication initiation factor; Validated	99.86
PRK08727	233	hypothetical protein; Validated	99.86
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.85
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.84
CHL00181	287	cbbX CbbX; Provisional	99.84
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.83
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.82
PRK06581	263	DNA polymerase III subunit delta'; Validated	99.82
PRK06620	214	hypothetical protein; Validated	99.81
PRK05907	311	hypothetical protein; Provisional	99.81
PRK05642	234	DNA replication initiation factor; Validated	99.81
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.81
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.8
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.8
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.79
PRK12422	445	chromosomal replication initiation protein; Provis	99.78
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.78
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.77
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.77
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.77
PRK07452	326	DNA polymerase III subunit delta; Validated	99.77
PRK09087	226	hypothetical protein; Validated	99.77
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.76
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.75
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.75
PRK05629	318	hypothetical protein; Validated	99.75
PRK07914	320	hypothetical protein; Reviewed	99.75
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.74
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.73
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.73
PRK08487	328	DNA polymerase III subunit delta; Validated	99.72
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	99.72
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.71
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.71
PRK06585	343	holA DNA polymerase III subunit delta; Reviewed	99.71
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.71
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.71
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.7
COG0593	408	DnaA ATPase involved in DNA replication initiation	99.7
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.7
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.7
PRK14700	300	recombination factor protein RarA; Provisional	99.69
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.69
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.68
TIGR01128	302	holA DNA polymerase III, delta subunit. subunit ar	99.68
CHL00176	638	ftsH cell division protein; Validated	99.68
PRK05574	340	holA DNA polymerase III subunit delta; Reviewed	99.68
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.68
CHL00095	821	clpC Clp protease ATP binding subunit	99.67
KOG1968	871	consensus Replication factor C, subunit RFC1 (larg	99.66
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.66
CHL00195	489	ycf46 Ycf46; Provisional	99.66
PRK08485	206	DNA polymerase III subunit delta'; Validated	99.66
PRK10865	857	protein disaggregation chaperone; Provisional	99.64
CHL00095	821	clpC Clp protease ATP binding subunit	99.64
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.63
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.63
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.63
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.63
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.63
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.63
PRK10865	857	protein disaggregation chaperone; Provisional	99.62
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.62
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.62
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.62
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.61
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	99.6
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.6
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.6
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.6
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.59
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.59
KOG1942	456	consensus DNA helicase, TBP-interacting protein [R	99.57
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	99.57
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.56
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.56
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.53
PF00004	132	AAA: ATPase family associated with various cellula	99.52
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	99.52
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	99.51
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.49
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	99.49
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	99.49
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.49
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.48
COG1466	334	HolA DNA polymerase III, delta subunit [DNA replic	99.48
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.47
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.47
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.47
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.46
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	99.46
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.45
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	99.45
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	99.45
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	99.43
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.42
KOG0740	428	consensus AAA+-type ATPase [Posttranslational modi	99.41
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.41
KOG2680	454	consensus DNA helicase TIP49, TBP-interacting prot	99.41
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.4
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.39
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.37
PRK13531	498	regulatory ATPase RavA; Provisional	99.37
CHL00206	2281	ycf2 Ycf2; Provisional	99.36
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	99.36
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.34
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.34
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.33
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.32
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.32
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.32
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.31
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	99.3
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	99.3
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	99.29
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	99.29
PRK11608	326	pspF phage shock protein operon transcriptional ac	99.29
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.29
KOG1514	767	consensus Origin recognition complex, subunit 1, a	99.29
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	99.27
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.27
PHA02244	383	ATPase-like protein	99.27
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	99.26
PRK05022	509	anaerobic nitric oxide reductase transcription reg	99.25
PRK15424	538	propionate catabolism operon regulatory protein Pr	99.24
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	99.22
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.22
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.22
COG0714	329	MoxR-like ATPases [General function prediction onl	99.21
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.21
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	99.19
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.18
COG2204	464	AtoC Response regulator containing CheY-like recei	99.18
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.17
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.17
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	99.16
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.15
PRK12377	248	putative replication protein; Provisional	99.14
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	99.14
PF08542	89	Rep_fac_C: Replication factor C C-terminal domain;	99.13
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.12
PRK13765	637	ATP-dependent protease Lon; Provisional	99.11
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.11
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	99.1
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	99.1
PRK08116	268	hypothetical protein; Validated	99.09
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	99.09
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	99.07
smart00350	509	MCM minichromosome maintenance proteins.	99.05
PF07726	131	AAA_3: ATPase family associated with various cellu	99.05
PRK07952	244	DNA replication protein DnaC; Validated	99.04
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.04
PF06144	172	DNA_pol3_delta: DNA polymerase III, delta subunit;	99.03
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	99.02
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	99.02
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.02
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.02
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.01
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.01
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.01
PRK08181	269	transposase; Validated	98.99
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.98
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.98
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	98.98
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.98
PRK06526	254	transposase; Provisional	98.97
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.97
PRK09862	506	putative ATP-dependent protease; Provisional	98.97
PF13173	128	AAA_14: AAA domain	98.97
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.96
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.96
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.96
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.96
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.95
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.95
PRK15115	444	response regulator GlrR; Provisional	98.95
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	98.95
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	98.94
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.94
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.94
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.93
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.92
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.92
smart00382	148	AAA ATPases associated with a variety of cellular	98.92
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.92
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	98.92
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.92
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.91
KOG2170	344	consensus ATPase of the AAA+ superfamily [General	98.91
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.9
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.9
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.9
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	98.9
PRK04132	846	replication factor C small subunit; Provisional	98.9
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.9
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.89
cd03246	173	ABCC_Protease_Secretion This family represents the	98.89
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	98.89
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.89
PRK06921	266	hypothetical protein; Provisional	98.88
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.88
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.88
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.88
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.88
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.88
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.88
PRK06835	329	DNA replication protein DnaC; Validated	98.87
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	98.87
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.87
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.87
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.86
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.86
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.86
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.86
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.86
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.85
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.85
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.84
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.84
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.84
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.83
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.83
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.83
PHA00729	226	NTP-binding motif containing protein	98.83
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.83
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.83
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.82
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.82
PRK10908	222	cell division protein FtsE; Provisional	98.82
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.81
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.79
COG0606	490	Predicted ATPase with chaperone activity [Posttran	98.79
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.79
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.79
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	98.78
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.78
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.78
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.78
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.78
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.78
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.78
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.78
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.77
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.77
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.77
PRK10365	441	transcriptional regulatory protein ZraR; Provision	98.77
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.76
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.76
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.76
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.76
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.75
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.75
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.75
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.75
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.75
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.75
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.74
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.74
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.74
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.74
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.74
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.73
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.73
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.73
PRK04841	903	transcriptional regulator MalT; Provisional	98.73
PRK09183	259	transposase/IS protein; Provisional	98.73
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.73
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.73
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.73
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.73
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.73
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.73
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.73
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.73
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.73
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.72
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.72
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.72
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.72
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.72
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.72
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.72
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.72
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.72
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.72
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.72
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.71
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.71
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.71
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	98.71
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.71
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.71
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.71
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.7
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.7
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.7
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.7
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.7
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.7
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.69
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.69
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.69
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.69
PF05729	166	NACHT: NACHT domain	98.69
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.69
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.69
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.69
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.69
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.68
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.68
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.68
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.68
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.68
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.68
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.68
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.68
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.67
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.67
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.67
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.67
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.67
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.67
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.67
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.66
PRK08939	306	primosomal protein DnaI; Reviewed	98.66
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.66
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.66
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.66
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	98.65
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.65
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	98.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.64
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.64
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.64
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.64
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.64
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.64
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.63
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.63
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.63
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.63
KOG0736	953	consensus Peroxisome assembly factor 2 containing	98.62
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.62
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.62
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.61
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.61
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.61
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.61
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.61
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.61
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.61
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.6
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.6
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.6
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.6
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.59
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.59
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.59
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.59
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.58
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.58
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.58
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.58
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.58
PRK13695	174	putative NTPase; Provisional	98.57
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.57
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.56
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.56
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.56
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.56
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.55
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.55
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.55
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.55
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.55
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.55
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.55
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.55
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.54
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.54
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.54
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.54
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.54
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.54
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.53
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	98.53
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.53
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.53
PHA02774	613	E1; Provisional	98.53
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.52
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.52
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.52
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.52
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.52
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.51
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.51
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.51
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.51
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.5
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.5
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.5
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.5
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.5
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.5
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.5
PRK10938	490	putative molybdenum transport ATP-binding protein	98.5
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.5
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.49
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.49
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.49
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	98.49
PLN03130	1622	ABC transporter C family member; Provisional	98.49
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.49

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=100.00  E-value=5.6e-70  Score=452.53  Aligned_cols=349  Identities=58%  Similarity=0.961  Sum_probs=336.8

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      |+|++||||++++.+.++++....++.....+.+||+++|||+|+||.|.+.++.+++++.+.....++.+.|.  +|++
T Consensus         1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~--tpS~   78 (351)
T KOG2035|consen    1 MLWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT--TPSK   78 (351)
T ss_pred             CcchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe--cCCC
Confidence            89999999999999999999999999998889999999999999999999999999999999999999999988  8888


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ++ +++.++++++|++++|++.|++++..+++++++++++.++..+++..+||++|.|+|.|+.++|.+|+++||+++.+
T Consensus        79 kk-lEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~  157 (351)
T KOG2035|consen   79 KK-LEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN  157 (351)
T ss_pred             ce-EEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence            76 89999999999999999999999999999999999999998888889999999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~  240 (354)
                      +++|++||..++++++|+|||..++.+.|+++++..+|..++.+||+.++.+.+..|++.|+||+|+|+..||.++.+..
T Consensus       158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~  237 (351)
T KOG2035|consen  158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNE  237 (351)
T ss_pred             ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCC-CCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 018543          241 PFKDN-QAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAY  319 (354)
Q Consensus       241 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~  319 (354)
                      +++.+ +.++.+||+..+.++++.+..++++..+.++|..+|+|+.+|+||..|+.++.+.+....+...+..+.++|++
T Consensus       238 ~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~~~d~~~k~~~~~~Aa~  317 (351)
T KOG2035|consen  238 PFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLLKCDTQLKLEVIQHAAK  317 (351)
T ss_pred             cccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            77766 57899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHhhCCCChhHhHHHHHHHHHHHHHHHHhhh
Q 018543          320 YEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVAT  352 (354)
Q Consensus       320 ~~~~l~~~~~~~l~l~~~i~~~~~~~~~~~~~~  352 (354)
                      |++||..|.+..+|||+|+|++|++|++|.-+.
T Consensus       318 yEhRl~lG~KaIfHLEaFVA~fM~iy~~~~~~~  350 (351)
T KOG2035|consen  318 YEHRLRLGQKAIFHLEAFVAKFMCIYKKFLSST  350 (351)
T ss_pred             HHHHHhhcchhhhhHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999986554

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=100.00  E-value=2.4e-53  Score=345.08  Aligned_cols=309  Identities=26%  Similarity=0.405  Sum_probs=267.1

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      +|+|||||..+.|++|+++.+..|+-..++|.+||++|.||||+||||.+.++|++++++...                 
T Consensus        16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~k-----------------   78 (333)
T KOG0991|consen   16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYK-----------------   78 (333)
T ss_pred             hHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhh-----------------
Confidence            699999999999999999999999999999999999999999999999999999999875421                 


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~  161 (354)
                                ..++++|+++.+..+  ++|..++.|++..-. + +.++.||||+||+|.|+..+|++|+++||-++..+
T Consensus        79 ----------e~vLELNASdeRGID--vVRn~IK~FAQ~kv~-l-p~grhKIiILDEADSMT~gAQQAlRRtMEiyS~tt  144 (333)
T KOG0991|consen   79 ----------EAVLELNASDERGID--VVRNKIKMFAQKKVT-L-PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTT  144 (333)
T ss_pred             ----------hHhhhccCccccccH--HHHHHHHHHHHhhcc-C-CCCceeEEEeeccchhhhHHHHHHHHHHHHHcccc
Confidence                      124788888876654  789999999986543 1 34678999999999999999999999999999999


Q ss_pred             eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 018543          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP  241 (354)
Q Consensus       162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~  241 (354)
                      +|.++||...++.++++|||.+++|..+++.++...|..+++.|++.++++.++.++..+.||||+|+|.||....+-.-
T Consensus       145 RFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~  224 (333)
T KOG0991|consen  145 RFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGL  224 (333)
T ss_pred             hhhhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988766555


Q ss_pred             CCCCCC--CCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Q 018543          242 FKDNQA--IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAA  318 (354)
Q Consensus       242 ~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~  318 (354)
                      ++.+..  +........+.+++....+    .++.++.+.+.+++..|++|.+|+..+++.... .+++.++.++++..+
T Consensus       225 Vn~enVfKv~d~PhP~~v~~ml~~~~~----~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~~~~E~~rlE~ikeig  300 (333)
T KOG0991|consen  225 VNQENVFKVCDEPHPLLVKKMLQACLK----RNIDEALKILAELWKLGYSPEDIITTLFRVVKNMDVAESLRLEFIKEIG  300 (333)
T ss_pred             cchhhhhhccCCCChHHHHHHHHHHHh----ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            555441  1111112333444444443    789999999999999999999999998876654 456678899999999


Q ss_pred             HHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543          319 YYEHKMRRGNKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       319 ~~~~~l~~~~~~~l~l~~~i~~~~~~~  345 (354)
                      ..+.|+..|.+.++|+..++++++..-
T Consensus       301 ~thmrI~eGv~s~LQl~glla~l~~~~  327 (333)
T KOG0991|consen  301 LTHMRILEGVNSLLQLSGLLAKLCKVG  327 (333)
T ss_pred             hHHhHHHhhHhHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998754

>PLN03025 replication factor C subunit; Provisional

Probab=100.00  E-value=3.7e-52  Score=376.06  Aligned_cols=310  Identities=25%  Similarity=0.402  Sum_probs=264.7

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      ++|+|||||++|+|++||+++++.|+.++..++.||++|+||||+||||+|+++|++++|+...                
T Consensus         1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~----------------   64 (319)
T PLN03025          1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYK----------------   64 (319)
T ss_pred             CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCc----------------
Confidence            5899999999999999999999999999999999999999999999999999999998764311                


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                                 ..++++++++....  ..+++.++.++..... . ..++++|+||||+|.|+..+|++|+++||.++.+
T Consensus        65 -----------~~~~eln~sd~~~~--~~vr~~i~~~~~~~~~-~-~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~  129 (319)
T PLN03025         65 -----------EAVLELNASDDRGI--DVVRNKIKMFAQKKVT-L-PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNT  129 (319)
T ss_pred             -----------cceeeecccccccH--HHHHHHHHHHHhcccc-C-CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCC
Confidence                       12456666554332  3577777776654321 1 1246799999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~  240 (354)
                      ++||++||..+++.++|+|||..++|++++.+++..+|..+++++|+.+++++++.++..++||+|.+++.||..+....
T Consensus       130 t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~  209 (319)
T PLN03025        130 TRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFG  209 (319)
T ss_pred             ceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997665434


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Q 018543          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWA  317 (354)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~  317 (354)
                      .++.+.  .+......+.++++++.+..    +++.+++..+++++..|++|..|+..+...+.+ .+++..+..++.++
T Consensus       210 ~i~~~~v~~~~~~~~~~~i~~~i~~~~~----~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~~~~~~~~~~~~~~~  285 (319)
T PLN03025        210 FVNQENVFKVCDQPHPLHVKNIVRNCLK----GKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNYDMPEFLKLEYLREI  285 (319)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            454433  22344456778888888776    788899999999999999999999999665544 45888899999999


Q ss_pred             HHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543          318 AYYEHKMRRGNKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       318 ~~~~~~l~~~~~~~l~l~~~i~~~~~~~  345 (354)
                      +++++||..|.++.+||++|++++|...
T Consensus       286 ~~~~~~~~~g~~~~~~l~a~~~~~~~~~  313 (319)
T PLN03025        286 GFAHMRICDGVGSLLQLSGLLAKLCLVR  313 (319)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998863

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=100.00  E-value=1.1e-52  Score=355.14  Aligned_cols=312  Identities=27%  Similarity=0.421  Sum_probs=262.7

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      +.|+|||||++|+|++||+++++.|++.+..+..||+|||||||||||++|+++|++++|++...-              
T Consensus        24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~--------------   89 (346)
T KOG0989|consen   24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPC--------------   89 (346)
T ss_pred             cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCcccccc--------------
Confidence            469999999999999999999999999999888899999999999999999999999988653321              


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC----CCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~  156 (354)
                                  ...+.+.++..+..  .+++.++.++......    ......++|+||||+|.|+.++|++|+++||+
T Consensus        90 ------------rvl~lnaSderGis--vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~  155 (346)
T KOG0989|consen   90 ------------RVLELNASDERGIS--VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED  155 (346)
T ss_pred             ------------chhhhccccccccc--chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc
Confidence                        12344555544332  4666666666543321    11345679999999999999999999999999


Q ss_pred             ccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543          157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (354)
Q Consensus       157 ~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~  236 (354)
                      ++.+++||++||..++++.++.|||+.++|+++.++++...|+.|+.+||+.+++++++.|+..|+||+|+|+..||.++
T Consensus       156 ~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls  235 (346)
T KOG0989|consen  156 FSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLS  235 (346)
T ss_pred             cccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCC---CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--hCCHHHHH
Q 018543          237 VQQYPFKDNQ---AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--RLDAEIKH  311 (354)
Q Consensus       237 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--~~~~~~~~  311 (354)
                      ..++.++...   .+.....++.+.++++....    .+..+..+...+++..|++|..++.+++.-+..  ..++..+.
T Consensus       236 ~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S----~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~  311 (346)
T KOG0989|consen  236 LLGKRITTSLVNEELAGVVPDEKLLDLLELALS----ADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKA  311 (346)
T ss_pred             ccCcccchHHHHHHHhccCCHHHHHHHHHHHHc----cChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccccchHHHH
Confidence            9888777332   22323445667777777766    455566677788999999999999999888877  45677889


Q ss_pred             HHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543          312 EVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       312 ~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~  344 (354)
                      .+-......+.++..|.+.+++|-.|.......
T Consensus       312 ~~~~kl~~~~~~~~dg~~l~~~L~~L~~~~~ql  344 (346)
T KOG0989|consen  312 QISLKLFTRDKRLEDGEDLELALKDLLEAEKQL  344 (346)
T ss_pred             HHHHHHHhccchhhcchhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998877654

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=2e-45  Score=347.11  Aligned_cols=323  Identities=19%  Similarity=0.222  Sum_probs=260.5

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++||||++|+|++||+++++.|++++..++.+| +||+||+|+||||+|+++|+.++|........        |+.|
T Consensus         5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~p--------Cg~C   76 (509)
T PRK14958          5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANP--------CNDC   76 (509)
T ss_pred             hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCccc--------CCCC
Confidence            48999999999999999999999999999999999 89999999999999999999999875322111        3444


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+.+++++....  ....+|++++.+... +    ..++++|+||||+|+|+.+++++|+++||+|+++
T Consensus        77 ~~C~~i~~g~~~d~~eidaas~~--~v~~iR~l~~~~~~~-p----~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~  149 (509)
T PRK14958         77 ENCREIDEGRFPDLFEVDAASRT--KVEDTRELLDNIPYA-P----TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH  149 (509)
T ss_pred             HHHHHHhcCCCceEEEEcccccC--CHHHHHHHHHHHhhc-c----ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence            44445556666777888765322  223578877665443 2    2467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.||++|+++.+++++|+|||..++|++++.+++..++.+++.++|+.++++++..|++.++||+|.|+++|+.++..+ 
T Consensus       150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~  229 (509)
T PRK14958        150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGN  229 (509)
T ss_pred             eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998766553 


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------  303 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------  303 (354)
                      ..++.++  .+.....++.++++++.+..    ++...+...+.+++..|.++..++.++...+.+              
T Consensus       230 ~~It~~~V~~~lg~~~~~~i~~ll~al~~----~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~  305 (509)
T PRK14958        230 GKVLIADVKTMLGTIEPLLLFDILEALAA----KAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIEN  305 (509)
T ss_pred             CCcCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccccc
Confidence            4556554  23345567889999999887    566677788889999999999888777665444              


Q ss_pred             ----------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 ----------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 ----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                .++++......+.+......|....++++.+|-.+.|++.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  355 (509)
T PRK14958        306 DSEQLRQLAKLLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLA  355 (509)
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Confidence                      1222222234445555567777888889999998888874

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=4.2e-45  Score=342.36  Aligned_cols=323  Identities=19%  Similarity=0.242  Sum_probs=260.7

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++||||++|++++||+++++.|+.++++|+++| +||+||+|+||||+|+++++.++|........        |..|
T Consensus         3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~p--------C~~C   74 (535)
T PRK08451          3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTP--------CDTC   74 (535)
T ss_pred             cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCC--------Cccc
Confidence            59999999999999999999999999999999999 89999999999999999999998865322111        3333


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+.+++++....  ....+++.++.....+.     .++++|+||||+|.|+.+++++|+++||+|+++
T Consensus        75 ~~C~~~~~~~h~dv~eldaas~~--gId~IRelie~~~~~P~-----~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~  147 (535)
T PRK08451         75 IQCQSALENRHIDIIEMDAASNR--GIDDIRELIEQTKYKPS-----MARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY  147 (535)
T ss_pred             HHHHHHhhcCCCeEEEecccccc--CHHHHHHHHHHHhhCcc-----cCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence            33334444445555666544322  22357777765433222     467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.||++|+++.+++++|+|||++++|.+++.+++..++.+++.++|+.++++++..|++.++||+|+++++|+.++... 
T Consensus       148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~  227 (535)
T PRK08451        148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCK  227 (535)
T ss_pred             eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999776553 


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh-------CCHHHH
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR-------LDAEIK  310 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~-------~~~~~~  310 (354)
                      ..++.+.  .+......+.++++++.+..    ++...+...+.++  .++++..++..+...+...       ......
T Consensus       228 ~~It~~~V~~~lg~~~~~~I~~li~ai~~----~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~~~~~~l~~l  301 (535)
T PRK08451        228 NAITESKVADMLGLLDPSKLEDFFQAILN----QDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSKDSEFSILLY  301 (535)
T ss_pred             CCCCHHHHHHHhCCCCHHHHHHHHHHHHh----cCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcccccccHHHH
Confidence            3455443  22233345678888888876    5566677777766  4688999999888777632       233456


Q ss_pred             HHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543          311 HEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       311 ~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~  345 (354)
                      .+.++.+......+..|.++++|++.++++++...
T Consensus       302 ~r~~riL~~~k~~l~~g~~~~i~l~~~~~~~~~~~  336 (535)
T PRK08451        302 ERFFRILSSAKSLLKEGADDGFVLLLMLFKMKEAL  336 (535)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence            77889999999999999999999999999998743

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=2.6e-45  Score=348.25  Aligned_cols=322  Identities=17%  Similarity=0.244  Sum_probs=254.2

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|.+||||++|+|++||+++++.|++++.+++++| +||+||+|+||||+++.+++.++|.......        .|..|
T Consensus         5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~--------PCG~C   76 (830)
T PRK07003          5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQ--------PCGVC   76 (830)
T ss_pred             hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCC--------CCccc
Confidence            48899999999999999999999999999999999 8999999999999999999999886432110        13334


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.++++++..+..  ....++++++.... .+.    .+++||+||||+|+|+..++|+|+++||+++.+
T Consensus        77 ~sCr~I~~G~h~DviEIDAas~r--gVDdIReLIe~a~~-~P~----~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~  149 (830)
T PRK07003         77 RACREIDEGRFVDYVEMDAASNR--GVDEMAALLERAVY-APV----DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH  149 (830)
T ss_pred             HHHHHHhcCCCceEEEecccccc--cHHHHHHHHHHHHh-ccc----cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence            44444444455566777665322  22357777765443 222    467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-Q  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~  239 (354)
                      ++|||+||+.++++++|+|||+.++|++++.+++..+|++++.+||+.++++++..|++.++||+|+++++|+..... .
T Consensus       150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~  229 (830)
T PRK07003        150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA  229 (830)
T ss_pred             eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997765443 3


Q ss_pred             CCCCCCC---CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 018543          240 YPFKDNQ---AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------  303 (354)
Q Consensus       240 ~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------  303 (354)
                      ..++.+.   .+...+ .+.++++++.++.    ++..++...+.+++..+++...++.+|...+.+             
T Consensus       230 ~~It~~~V~~~LG~~d-~~~i~~ll~aL~~----~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~  304 (830)
T PRK07003        230 NEVTETAVSGMLGALD-QTYMVRLLDALAA----GDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLD  304 (830)
T ss_pred             CCcCHHHHHHHhCCCC-HHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence            4455442   122333 3458888888887    667777788888888888877666655544433             


Q ss_pred             -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                   .++.+.+...++.+..-...|....+.++.+|..+.|++.
T Consensus       305 ~~~e~~~~~~~a~~~s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~  357 (830)
T PRK07003        305 EWPEAADLRRFAELLSPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLA  357 (830)
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhc
Confidence                         2344445556777777777888888899999998888875

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=4.5e-45  Score=339.39  Aligned_cols=323  Identities=18%  Similarity=0.256  Sum_probs=262.1

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
                      |-|++||||++|+|++||+++++.|++++..|+++| +||+||+|+||||+|+.+|+.++|........        |+.
T Consensus         1 ~~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~p--------Cg~   72 (491)
T PRK14964          1 MNLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDP--------CGT   72 (491)
T ss_pred             CChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCC--------ccc
Confidence            789999999999999999999999999999999998 99999999999999999999998865332111        344


Q ss_pred             ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC
Q 018543           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (354)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~  159 (354)
                      |..|..+....+.+++++++.+..  ....++++++.+.. .|+    .++++|+||||+|+|+.+++++|+++||+|++
T Consensus        73 C~~C~~i~~~~~~Dv~eidaas~~--~vddIR~Iie~~~~-~P~----~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~  145 (491)
T PRK14964         73 CHNCISIKNSNHPDVIEIDAASNT--SVDDIKVILENSCY-LPI----SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP  145 (491)
T ss_pred             cHHHHHHhccCCCCEEEEecccCC--CHHHHHHHHHHHHh-ccc----cCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence            444456666677888888876432  22458888776544 343    46889999999999999999999999999999


Q ss_pred             ceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       160 ~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~  239 (354)
                      ++.||++|+..+++.++|+|||+.++|++++.+++..++.+++.++|+.+++++++.|++.++||+|.++++|+.++.++
T Consensus       146 ~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~  225 (491)
T PRK14964        146 HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYS  225 (491)
T ss_pred             CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887653


Q ss_pred             -CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h--------
Q 018543          240 -YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R--------  304 (354)
Q Consensus       240 -~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~----~--------  304 (354)
                       ..++.+.  .+......+.++++++.+..    ++..++...+.+++..+ +|..++.++...+..    +        
T Consensus       226 ~~~It~e~V~~llg~~~~~~If~L~~aI~~----~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~  300 (491)
T PRK14964        226 NNKISEKSVRDLLGCVDKHILEDLVEAILL----GDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFL  300 (491)
T ss_pred             CCCCCHHHHHHHHccCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence             3555444  22223345678999999998    66778888888888765 677777655543221    0        


Q ss_pred             --------------CCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          305 --------------LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       305 --------------~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                    ++.....++.+.+.+....+....++++.+|-.+.|++.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~  353 (491)
T PRK14964        301 LGEDLITRIKSLKIGSTIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCY  353 (491)
T ss_pred             CCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHh
Confidence                          233344456677777788888888999999998888764

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=4.9e-45  Score=335.19  Aligned_cols=324  Identities=18%  Similarity=0.190  Sum_probs=247.6

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|.+||||++|+|++||+++++.|+.++..++++| +||+||+|+||||+|+.+|+.+.|........        |..|
T Consensus         7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~p--------Cg~C   78 (484)
T PRK14956          7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEP--------CNEC   78 (484)
T ss_pred             hhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccc--------cCCC
Confidence            69999999999999999999999999999999999 99999999999999999999998865322111        3333


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+++++++.....  ...++++.+.+....     ..++++|+||||+|+|+.+++++|+++||+++.+
T Consensus        79 ~sC~~i~~g~~~dviEIdaas~~g--Vd~IReL~e~l~~~p-----~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~  151 (484)
T PRK14956         79 TSCLEITKGISSDVLEIDAASNRG--IENIRELRDNVKFAP-----MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAH  151 (484)
T ss_pred             cHHHHHHccCCccceeechhhccc--HHHHHHHHHHHHhhh-----hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCc
Confidence            333455555666777777643222  234677766554322     1457899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-Q  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~  239 (354)
                      +.||++|+.+++++++|+|||+.++|.+++.+++..+|++++.++|+.++++++..|++.++||+|+|+++||.+... .
T Consensus       152 viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~  231 (484)
T PRK14956        152 IVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTD  231 (484)
T ss_pred             eEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999875433 3


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h---------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R---------  304 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~----~---------  304 (354)
                      ..++.+.  .+...+..+.+.++++.+..++   ....+...+.+++..|.+|..++.++...+.+    .         
T Consensus       232 ~~it~~~V~~~lg~~~~~~~~~l~~si~~~d---~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~  308 (484)
T PRK14956        232 SKLTGVKIRKMIGYHGIEFLTSFIKSLIDPD---NHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESV  308 (484)
T ss_pred             CCcCHHHHHHHhCCCCHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhc
Confidence            3444433  1122234456677777777532   23456677888899999999998877766544    1         


Q ss_pred             -CCHHHHH------------HHHHHH-------HHH-hhHhhCCCChhHhHHHHHHHHHH
Q 018543          305 -LDAEIKH------------EVCHWA-------AYY-EHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       305 -~~~~~~~------------~~~~~~-------~~~-~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                       ++++.+.            .+..++       ... +.+++...++++.+|-.+++++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~  368 (484)
T PRK14956        309 NFPKEDLQKMKSDFENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVE  368 (484)
T ss_pred             cCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhc
Confidence             1111111            112111       111 34567788899999999988875

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.1e-44  Score=344.36  Aligned_cols=324  Identities=16%  Similarity=0.210  Sum_probs=255.4

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
                      |-|-+||||++|+|++||+++++.|++++.+|+++| +||+||+|+||||+|+++|+.++|....... .       |..
T Consensus         1 ~al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~-p-------Cg~   72 (584)
T PRK14952          1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTAT-P-------CGV   72 (584)
T ss_pred             CcHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCC-c-------ccc
Confidence            446699999999999999999999999999999999 8999999999999999999999986422111 1       333


Q ss_pred             ccccccccc--cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc
Q 018543           80 RNIDLELTT--LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (354)
Q Consensus        80 ~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~  157 (354)
                      |..|..+..  ..+.++++++.....  ....++++.+.+.. .+.    .++++|+||||+|+|+.+++|+|+++||++
T Consensus        73 C~~C~~i~~~~~~~~dvieidaas~~--gvd~iRel~~~~~~-~P~----~~~~KVvIIDEah~Lt~~A~NALLK~LEEp  145 (584)
T PRK14952         73 CESCVALAPNGPGSIDVVELDAASHG--GVDDTRELRDRAFY-APA----QSRYRIFIVDEAHMVTTAGFNALLKIVEEP  145 (584)
T ss_pred             cHHHHHhhcccCCCceEEEecccccc--CHHHHHHHHHHHHh-hhh----cCCceEEEEECCCcCCHHHHHHHHHHHhcC
Confidence            333333322  223456677654322  22357776655433 332    467899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 018543          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (354)
Q Consensus       158 ~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~  237 (354)
                      +.++.||++|+++++++++|+|||++++|.+++.+++.++|.+++.++|+.++++++..|++.++||+|.++++|+.++.
T Consensus       146 p~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~  225 (584)
T PRK14952        146 PEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA  225 (584)
T ss_pred             CCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             cC--CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------
Q 018543          238 QQ--YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----------  303 (354)
Q Consensus       238 ~~--~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~----------  303 (354)
                      ..  ..++.+.  .+.....++.++++++.+..    ++...+...+.+++..+.+|..++..+..++..          
T Consensus       226 ~~~~~~It~~~v~~llg~~~~~~i~~lv~al~~----~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~  301 (584)
T PRK14952        226 GAADTHVTYQRALGLLGATDVALIDDAVDALAA----DDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDA  301 (584)
T ss_pred             ccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchh
Confidence            53  3444433  23333456778888888876    566677788888888899998888776665443          


Q ss_pred             ---------------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 ---------------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 ---------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                           .++.+...++++.+......++.+.++++.+|.++.+++.
T Consensus       302 ~~~~l~~~~~~~~~~l~~qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~  362 (584)
T PRK14952        302 AARGVVDAPEDVLERMREQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLL  362 (584)
T ss_pred             hhcccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc
Confidence                                 1222334445666666777788888899999999999874

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.6e-44  Score=339.03  Aligned_cols=328  Identities=17%  Similarity=0.239  Sum_probs=250.9

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcc-cccccccccccCCC
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEK-VKVENKTWKIDAGS   79 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~-~~~~~~~~~~~~~~   79 (354)
                      .|.+||||++|+|++||+++++.|++++.+++++| +||+||+|+||||+++.+++.++|..... ......    -|+.
T Consensus         5 vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~----PCG~   80 (700)
T PRK12323          5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ----PCGQ   80 (700)
T ss_pred             hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC----CCcc
Confidence            48999999999999999999999999999999999 89999999999999999999999854210 000000    1333


Q ss_pred             ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC
Q 018543           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (354)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~  159 (354)
                      |..|..+....+.+.+++++...  .....++++++.+....     ..++++|+||||+|+|+.+++|+|+++||+++.
T Consensus        81 C~sC~~I~aG~hpDviEIdAas~--~gVDdIReLie~~~~~P-----~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~  153 (700)
T PRK12323         81 CRACTEIDAGRFVDYIEMDAASN--RGVDEMAQLLDKAVYAP-----TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPE  153 (700)
T ss_pred             cHHHHHHHcCCCCcceEeccccc--CCHHHHHHHHHHHHhch-----hcCCceEEEEEChHhcCHHHHHHHHHhhccCCC
Confidence            44444555556666777776532  22245788777654432     246789999999999999999999999999999


Q ss_pred             ceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       160 ~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~  239 (354)
                      ++.|||+||++++++++|+|||+.++|++++.+++.++|++++.++|+.++++++..|++.++|++|+++++++.+...+
T Consensus       154 ~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~  233 (700)
T PRK12323        154 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYS  233 (700)
T ss_pred             CceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988654433


Q ss_pred             -CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 018543          240 -YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------  303 (354)
Q Consensus       240 -~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------  303 (354)
                       ..++.+.  .+......+.+.++++.+..    ++.......+.++...++++..++.++...+.+             
T Consensus       234 ~~~It~~~V~~~LG~~d~~~i~~Ll~aL~~----~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~  309 (700)
T PRK12323        234 AGNVSEEAVRGMLGAIDQSYLVRLLDALAA----EDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQD  309 (700)
T ss_pred             cCCcCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhccc
Confidence             3343322  11111123456777777765    444455555555666777766555554433332             


Q ss_pred             -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543          304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~  344 (354)
                                   .++.+.....++.+......|....+.++.+|..+.|++..
T Consensus       310 ~~~~~~~~~~~a~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~  363 (700)
T PRK12323        310 DWPEADDIRRLAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAF  363 (700)
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhC
Confidence                         24445566677778888888888999999999999888753

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=100.00  E-value=1.4e-43  Score=322.04  Aligned_cols=309  Identities=32%  Similarity=0.553  Sum_probs=261.6

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      +|+|||||++|++++|+++++..+..+++.+..||++|+||||+|||++++++++++.++...                 
T Consensus         6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~-----------------   68 (319)
T PRK00440          6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWR-----------------   68 (319)
T ss_pred             ccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccc-----------------
Confidence            799999999999999999999999999999999999999999999999999999988654311                 


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~  161 (354)
                                ..+++++.++....  ..+++.+..+....+.   ...++++|+|||+|.++.+.++.|+++++.++.++
T Consensus        69 ----------~~~i~~~~~~~~~~--~~~~~~i~~~~~~~~~---~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~  133 (319)
T PRK00440         69 ----------ENFLELNASDERGI--DVIRNKIKEFARTAPV---GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNT  133 (319)
T ss_pred             ----------cceEEeccccccch--HHHHHHHHHHHhcCCC---CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCC
Confidence                      11234443332221  2345555555555443   22457899999999999999999999999998899


Q ss_pred             eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 018543          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP  241 (354)
Q Consensus       162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~  241 (354)
                      .+|++++...++.+++++||.+++|++++.+++..++.+++.++|+.+++++++.+++.++||+|.+++.|+.++..+..
T Consensus       134 ~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~  213 (319)
T PRK00440        134 RFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKE  213 (319)
T ss_pred             eEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998877666


Q ss_pred             CCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Q 018543          242 FKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWA  317 (354)
Q Consensus       242 ~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~  317 (354)
                      ++.+.  .+.....+..++++++.+..    ++..+++..+++|+. .+++|..|+..+...+.. .++++.+.++++.+
T Consensus       214 it~~~v~~~~~~~~~~~i~~l~~~~~~----~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~  289 (319)
T PRK00440        214 VTEEAVYKITGTARPEEIREMIELALN----GDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAI  289 (319)
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            66554  33444566788999998886    678889999999985 799999999888765544 68899999999999


Q ss_pred             HHHhhHhhCCCChhHhHHHHHHHHHHHHH
Q 018543          318 AYYEHKMRRGNKAIFHLEAFVAKFMSIYK  346 (354)
Q Consensus       318 ~~~~~~l~~~~~~~l~l~~~i~~~~~~~~  346 (354)
                      ++++++++.|.++.+++|.|+++++.+-+
T Consensus       290 ~~~d~~~k~g~~~~~~le~~i~~~~~~~~  318 (319)
T PRK00440        290 GEADFRITEGANERIQLEALLAKLALLGK  318 (319)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999987643

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=100.00  E-value=2.1e-43  Score=323.38  Aligned_cols=326  Identities=27%  Similarity=0.441  Sum_probs=258.9

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCC--cccccccccccccCC
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAG   78 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~~~~~~~~~~~   78 (354)
                      |+|++||||++|++++|++++++.|..++..+..||++|+||||+||||+++++++++.+...  ..+.+++..+.  ..
T Consensus         3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~--~~   80 (337)
T PRK12402          3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF--DQ   80 (337)
T ss_pred             CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh--hc
Confidence            799999999999999999999999999999999889999999999999999999999876541  11222222111  00


Q ss_pred             CccccccccccccCceeeeCCCC--CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543           79 SRNIDLELTTLSSANHVELSPSD--AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (354)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~  156 (354)
                      ..     ......+.+..+....  .+......++++++......+.    .+++++|||||+|.++.+.++.|++++++
T Consensus        81 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vlilDe~~~l~~~~~~~L~~~le~  151 (337)
T PRK12402         81 GK-----KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPL----SADYKTILLDNAEALREDAQQALRRIMEQ  151 (337)
T ss_pred             ch-----hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCC----CCCCcEEEEeCcccCCHHHHHHHHHHHHh
Confidence            00     0000000000000000  0011123455556555555443    35678999999999999999999999999


Q ss_pred             ccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543          157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (354)
Q Consensus       157 ~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~  236 (354)
                      ++..+.+|++++.+.++.++++|||..+.|.|++.+++..++.+++.++|+.+++++++.+++.++||+|.+++.|+.++
T Consensus       152 ~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~  231 (337)
T PRK12402        152 YSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA  231 (337)
T ss_pred             ccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88889999999998999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hcCCCCCCCC--C-CCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHhCCHHHHHH
Q 018543          237 VQQYPFKDNQ--A-IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLKRLDAEIKHE  312 (354)
Q Consensus       237 ~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~il~~l~~~~~~~~~~~~~~~  312 (354)
                      .....++.+.  . +....++..++++++.+..    ++..+++..+++++ .+|++|..|+..+......+++...+.+
T Consensus       232 ~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~----~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~l~~  307 (337)
T PRK12402        232 LAAGEITMEAAYEALGDVGTDEVIESLLDAAEA----GDFTDARKTLDDLLIDEGLSGGEVLEELLRVARSRYRGDNLAR  307 (337)
T ss_pred             HcCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCHHHHHH
Confidence            6555666554  1 2223567899999999887    67788999999987 6899999999988776666799999999


Q ss_pred             HHHHHHHHhhHhhCCCChhHhHHHHHHHH
Q 018543          313 VCHWAAYYEHKMRRGNKAIFHLEAFVAKF  341 (354)
Q Consensus       313 ~~~~~~~~~~~l~~~~~~~l~l~~~i~~~  341 (354)
                      ++.++++++.+++.|.++.+|||.|++++
T Consensus       308 ~~~~l~~~d~~lk~g~~~~~~le~~i~~~  336 (337)
T PRK12402        308 LHRLAADADARLTDGANDRIQLEALLAEL  336 (337)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence            99999999999999999999999999875

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=9.4e-44  Score=339.04  Aligned_cols=328  Identities=19%  Similarity=0.257  Sum_probs=259.3

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++||||++|+|++||+++++.|++++..++.+| +||+||+|+||||+++++|+.++|.......  +... .-|+.|
T Consensus         5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~--~~~~-~pCg~C   81 (618)
T PRK14951          5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQG--GITA-TPCGVC   81 (618)
T ss_pred             HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCccccc--CCCC-CCCCcc
Confidence            48999999999999999999999999999999999 8999999999999999999999986432100  0000 014444


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+++++++...  .....++++++.+.. .+.    .++++|+||||+|+|+.+++|+|+++||+++.+
T Consensus        82 ~~C~~i~~g~h~D~~eldaas~--~~Vd~iReli~~~~~-~p~----~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~  154 (618)
T PRK14951         82 QACRDIDSGRFVDYTELDAASN--RGVDEVQQLLEQAVY-KPV----QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEY  154 (618)
T ss_pred             HHHHHHHcCCCCceeecCcccc--cCHHHHHHHHHHHHh-Ccc----cCCceEEEEEChhhCCHHHHHHHHHhcccCCCC
Confidence            4444555555556666665432  222357888766433 332    467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.|||+|+++.+++++++|||..++|++++.+++..+|++++.++|+.++++++..|++.++||+|.++++++.+...+ 
T Consensus       155 ~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~  234 (618)
T PRK14951        155 LKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGS  234 (618)
T ss_pred             eEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998665443 


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------  303 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------  303 (354)
                      ..++.+.  .+.....++.++++++.+..    ++...+...+.+++..|+++..++..+...+.+              
T Consensus       235 ~~It~~~V~~~Lg~~~~~~i~~LldaL~~----~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~  310 (618)
T PRK14951        235 GQLQEAAVRQMLGSVDRSHVFRLIDALAQ----GDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAA  310 (618)
T ss_pred             CCcCHHHHHHHHcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence            3444333  12233346788899999887    567778888888999999999998877655433              


Q ss_pred             -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                   .++.+....+.+.+..-...+....++++.+|..+.|++.
T Consensus       311 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~  363 (618)
T PRK14951        311 TDPEAAEVARLAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLA  363 (618)
T ss_pred             ChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence                         1233334456667777777788888899999999888875

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1e-43  Score=334.40  Aligned_cols=324  Identities=17%  Similarity=0.233  Sum_probs=255.3

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++||||++|++++||+++++.|.++++.|+++| +||+||+|+||||+|+++|+.+.|........        |..|
T Consensus         4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~p--------Cg~C   75 (702)
T PRK14960          4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTP--------CEVC   75 (702)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCC--------CccC
Confidence            48899999999999999999999999999999999 89999999999999999999998864221111        3333


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+.+++++.+..  ....+|+++......+ .    .++++|+||||+|+|+..++++|+++||+++.+
T Consensus        76 ~sC~~I~~g~hpDviEIDAAs~~--~VddIReli~~~~y~P-~----~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~  148 (702)
T PRK14960         76 ATCKAVNEGRFIDLIEIDAASRT--KVEDTRELLDNVPYAP-T----QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH  148 (702)
T ss_pred             HHHHHHhcCCCCceEEecccccC--CHHHHHHHHHHHhhhh-h----cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence            33334445555666777765432  2235777776544322 2    357899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.||++|+++.+++++++|||.+++|.+++.+++..+|.+++.++|+.++++++..|++.++||+|.|+++|+.+...+ 
T Consensus       149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~  228 (702)
T PRK14960        149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQ  228 (702)
T ss_pred             cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998765443 


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------  303 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------  303 (354)
                      ..++.+.  .+......+.++++++++.+    ++..++...+.++...+.++..++..+...+.+              
T Consensus       229 g~IT~edV~~lLG~~d~e~IfdLldAI~k----~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~  304 (702)
T PRK14960        229 GAVHHQDVKEMLGLIDRTIIYDLILAVHQ----NQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKY  304 (702)
T ss_pred             CCcCHHHHHHHhccCCHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            4455444  22223345578999999987    455566677777777788877665554433322              


Q ss_pred             -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543          304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~  344 (354)
                                   .++........+.+......|....++++.+|-.+.|++..
T Consensus       305 ~~~~~~~~~~la~~~s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~~  358 (702)
T PRK14960        305 SEEINAKILQLSKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAF  358 (702)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhC
Confidence                         23444455677777778888888899999999999988753

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.4e-43  Score=333.69  Aligned_cols=320  Identities=20%  Similarity=0.230  Sum_probs=268.4

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      +| +||||++|+|++||+++++.|+.++.+++++| +||+||||+||||+|+++|+.+.|.+... .        -|+.|
T Consensus         4 l~-~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~-~--------~cg~C   73 (504)
T PRK14963          4 LY-QRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDP-K--------PCGEC   73 (504)
T ss_pred             HH-HhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCC-C--------CCCcC
Confidence            45 99999999999999999999999999999999 69999999999999999999998764321 0        13444


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+++++++.+.  .....++++.+.+... ++    .++++||||||+|.++..++++|++.|++++.+
T Consensus        74 ~sc~~i~~~~h~dv~el~~~~~--~~vd~iR~l~~~~~~~-p~----~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~  146 (504)
T PRK14963         74 ESCLAVRRGAHPDVLEIDAASN--NSVEDVRDLREKVLLA-PL----RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEH  146 (504)
T ss_pred             hhhHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhhc-cc----cCCCeEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence            4445666667778888887532  2234577765554443 32    367899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~  240 (354)
                      +.+|++++++.++.++++|||..++|.+++.+++..+|.+++.++|+.++++++..|++.++||+|++++.||.++..+.
T Consensus       147 t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~  226 (504)
T PRK14963        147 VIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGT  226 (504)
T ss_pred             EEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877655


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------h
Q 018543          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------R  304 (354)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------~  304 (354)
                      .++.+.  .+....+++.++++++.+..    ++..++...+.+|+..|++|..|+..+.+++..              .
T Consensus       227 ~It~~~V~~~l~~~~~~~if~Li~al~~----~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~~~  302 (504)
T PRK14963        227 PVTRKQVEEALGLPPQERLRGIAAALAQ----GDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPRLE  302 (504)
T ss_pred             CCCHHHHHHHHCCCcHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence            666555  44556678899999999987    677788899999999999999999999988872              2


Q ss_pred             CCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          305 LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                      .++..+...+..+.+.+.++..+.. +..+|..+.+++.
T Consensus       303 ~~~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~l~~~~~  340 (504)
T PRK14963        303 GAEPRLLAAMTALDEQMERFARRSD-ALSLELALLHALL  340 (504)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHh
Confidence            3556678899999999999988875 6778877777763

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=2.7e-43  Score=330.26  Aligned_cols=328  Identities=17%  Similarity=0.208  Sum_probs=262.0

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
                      .+|++||||++|+|++||+++++.|++.+..++.+| +||+||+|+||||+|+++|+.+.|.....-   +..+. -|..
T Consensus         9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~---~~~~~-~C~~   84 (507)
T PRK06645          9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITE---NTTIK-TCEQ   84 (507)
T ss_pred             cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccc---CcCcC-CCCC
Confidence            379999999999999999999999999999999987 999999999999999999999988642110   00000 1333


Q ss_pred             ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC
Q 018543           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (354)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~  159 (354)
                      |..|..+....+.+.+++.+....  ....++++++.... .|+    .++++|+||||+|.|+..++++|+++||+++.
T Consensus        85 C~~C~~i~~~~h~Dv~eidaas~~--~vd~Ir~iie~a~~-~P~----~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~  157 (507)
T PRK06645         85 CTNCISFNNHNHPDIIEIDAASKT--SVDDIRRIIESAEY-KPL----QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPP  157 (507)
T ss_pred             ChHHHHHhcCCCCcEEEeeccCCC--CHHHHHHHHHHHHh-ccc----cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCC
Confidence            443445555566677777664322  22457887766543 333    46789999999999999999999999999999


Q ss_pred             ceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       160 ~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~  239 (354)
                      ++.||++|+..++++++++|||+.++|++++.+++..++++++.++|+.+++++++.|++.++||+|.|+++|+.++...
T Consensus       158 ~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~  237 (507)
T PRK06645        158 HIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMS  237 (507)
T ss_pred             CEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999885542


Q ss_pred             C----CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------
Q 018543          240 Y----PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----------  303 (354)
Q Consensus       240 ~----~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~----------  303 (354)
                      .    .++.+.  .+.....++.++++++.+..    ++..++...+.+++..|.+|..++..+...+..          
T Consensus       238 ~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~----~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~  313 (507)
T PRK06645        238 AKSDNIISPQVINQMLGLVDSSVIIEFVEYIIH----RETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNY  313 (507)
T ss_pred             ccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            2    455444  33455567899999999998    678888899999999999999887655443321          


Q ss_pred             -----------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 -----------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 -----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                       .++.....++.+.+.+....+....++++.+|-.+.|++.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~  370 (507)
T PRK06645        314 SLPIYESFNDRTKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIY  370 (507)
T ss_pred             ccccchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence                             1222334456667777777888888889888888888764

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.8e-43  Score=341.71  Aligned_cols=322  Identities=20%  Similarity=0.268  Sum_probs=250.7

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|.+||||++|++++||+++++.|++++..++++| +||+||+|+||||+|+++|+.++|....... .       |..|
T Consensus         5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~-p-------Cg~C   76 (944)
T PRK14949          5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT-P-------CGVC   76 (944)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC-C-------CCCc
Confidence            58999999999999999999999999999999999 7999999999999999999999886321100 0       3333


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+.+++++...  .....+|++++.+... +.    .++++|+||||+|+|+.+++++|+++||+|+.+
T Consensus        77 ~sC~~i~~g~~~DviEidAas~--~kVDdIReLie~v~~~-P~----~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~  149 (944)
T PRK14949         77 SSCVEIAQGRFVDLIEVDAASR--TKVDDTRELLDNVQYR-PS----RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH  149 (944)
T ss_pred             hHHHHHhcCCCceEEEeccccc--cCHHHHHHHHHHHHhh-hh----cCCcEEEEEechHhcCHHHHHHHHHHHhccCCC
Confidence            3334444444555666765432  1223578877766433 22    467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      ++||++|+++.+++++|+|||++++|++++.+++..+|.+++..+++.++++++..|+..++|++|+|+++++.+...+ 
T Consensus       150 vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~  229 (944)
T PRK14949        150 VKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGG  229 (944)
T ss_pred             eEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998654332 


Q ss_pred             CCCCCCC---CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 018543          240 YPFKDNQ---AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------  303 (354)
Q Consensus       240 ~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------  303 (354)
                      ..++.+.   .+...+ ...+..+++.+..    .+...+...+..++..|.++..|+..|...+.+             
T Consensus       230 ~~It~~~V~~llG~iD-~~~V~~llksI~~----~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l  304 (944)
T PRK14949        230 GQVMLTQVQTMLGSID-EQHVIALLKALTD----ADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQ  304 (944)
T ss_pred             CcccHHHHHHHhCCCC-HHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhc
Confidence            2332222   011112 3345566666655    456667777778888888888887766655443             


Q ss_pred             ------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 ------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                  .++.+....+++.+.....+|..+.+.++.||.++.++..
T Consensus       305 ~i~~e~i~~~a~~~s~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~  356 (944)
T PRK14949        305 SLYSEQIRAFAEQLSPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVA  356 (944)
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence                        1223334456778888889999999999999999988875

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.9e-43  Score=339.63  Aligned_cols=322  Identities=18%  Similarity=0.244  Sum_probs=261.1

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      |.+||||++|+|++||+++++.|++++++|+++| +||+||+|+||||+++++++.++|.......        .|..|.
T Consensus         6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~--------~c~~c~   77 (576)
T PRK14965          6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAE--------PCNVCP   77 (576)
T ss_pred             HHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCC--------CCCccH
Confidence            7799999999999999999999999999999999 8999999999999999999999886532111        144444


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~  161 (354)
                      .|.++...++.+++++......  ....++++.+.+... |.    .++++|+||||+|+|+.+++|+|+++||+|+.++
T Consensus        78 ~c~~i~~g~~~d~~eid~~s~~--~v~~ir~l~~~~~~~-p~----~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~  150 (576)
T PRK14965         78 PCVEITEGRSVDVFEIDGASNT--GVDDIRELRENVKYL-PS----RSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHV  150 (576)
T ss_pred             HHHHHhcCCCCCeeeeeccCcc--CHHHHHHHHHHHHhc-cc----cCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCe
Confidence            4556666677777777654321  223577777655433 32    4688999999999999999999999999999999


Q ss_pred             eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-C
Q 018543          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-Y  240 (354)
Q Consensus       162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~  240 (354)
                      .||++|+++++++++|+|||+.++|++++.+++..+|..++.++|+.++++++..+++.++||+|.++++|+.+.... .
T Consensus       151 ~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~  230 (576)
T PRK14965        151 KFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGD  230 (576)
T ss_pred             EEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999776553 3


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------
Q 018543          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------------  303 (354)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------------  303 (354)
                      .++.++  .+........++++++.+..    ++...+...+.+++..|.++..++..+...+.+               
T Consensus       231 ~It~edV~~llG~~~~~~l~~ll~al~~----~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~  306 (576)
T PRK14965        231 AVGDDDVAELLGVVDRRLLLDISAAVFG----RDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLD  306 (576)
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhcc
Confidence            444433  12222334567888888887    566777788888888899998887766554433               


Q ss_pred             --------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 --------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 --------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                    .++.+....+++.+.+.+..|+.+.++++.+|.++.+++.
T Consensus       307 ~~~~~~~~~~~~A~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~  360 (576)
T PRK14965        307 LSEAELAELRAQAAAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMAT  360 (576)
T ss_pred             CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence                          2333445567888889999999999999999999999876

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=2.1e-43  Score=347.45  Aligned_cols=326  Identities=18%  Similarity=0.225  Sum_probs=251.8

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
                      |.|.+||||++|++++||+++++.|++++..++++| |||+||+|+||||++++||+.|+|........        |..
T Consensus         3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~p--------Cg~   74 (824)
T PRK07764          3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTP--------CGE   74 (824)
T ss_pred             hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCC--------Ccc
Confidence            447799999999999999999999999999999999 99999999999999999999999864321111        333


Q ss_pred             cccccccccc--ccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc
Q 018543           80 RNIDLELTTL--SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (354)
Q Consensus        80 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~  157 (354)
                      |..|..+...  .+.++++++.....  ....+|++.+.+.. .+.    .+++||+||||+|+|+.+++|+|+++||++
T Consensus        75 C~sC~~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~-~p~----~~~~KV~IIDEad~lt~~a~NaLLK~LEEp  147 (824)
T PRK07764         75 CDSCVALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFF-APA----ESRYKIFIIDEAHMVTPQGFNALLKIVEEP  147 (824)
T ss_pred             cHHHHHHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHh-chh----cCCceEEEEechhhcCHHHHHHHHHHHhCC
Confidence            3323333322  33455666543321  22356776554332 222    467899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 018543          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (354)
Q Consensus       158 ~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~  237 (354)
                      +.++.|||+|++.++++++|+|||++++|.+++.+++..+|.+++.++|+.++++++..|++.++||+|.++++|+.++.
T Consensus       148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia  227 (824)
T PRK07764        148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLA  227 (824)
T ss_pred             CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             cC--CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------
Q 018543          238 QQ--YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----------  303 (354)
Q Consensus       238 ~~--~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~----------  303 (354)
                      ..  ..++.+.  .+........++++++.+..    ++...+...+.+++..+.++..++..+.+++.+          
T Consensus       228 ~~~~~~IT~e~V~allg~~~~~~I~~lidAL~~----~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~  303 (824)
T PRK07764        228 GAGPEGVTYERAVALLGVTDSALIDEAVDALAA----GDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDA  303 (824)
T ss_pred             hcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            42  2344433  23334456678888888875    344556666777777788877666555544332          


Q ss_pred             ---------------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543          304 ---------------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       304 ---------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~  345 (354)
                                           +++...+.++++.+.+....|+.+.++++.+|.++.+++.-.
T Consensus       304 ~~~~l~~~p~d~~~~L~~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll~~  366 (824)
T PRK07764        304 AERGLVDAPADQLDRMRAQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLLPS  366 (824)
T ss_pred             hhhhhccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhhc
Confidence                                 223333455677778888888888899999999999998643

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=3.8e-43  Score=328.16  Aligned_cols=328  Identities=19%  Similarity=0.274  Sum_probs=263.5

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++||||++|+|++||+.+++.|+.+++.|+.+| +||+||+|+|||++|+++|+.++|.....-.-.       |..|
T Consensus         6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~-------c~~c   78 (451)
T PRK06305          6 VSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP-------CNQC   78 (451)
T ss_pred             HHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC-------Cccc
Confidence            47899999999999999999999999999999999 999999999999999999999988643210000       2222


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+++++.+...  .....++++.+.+....     ..++++|+||||+|.|+.+++++|+++||+++.+
T Consensus        79 ~~C~~i~~~~~~d~~~i~g~~~--~gid~ir~i~~~l~~~~-----~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~  151 (451)
T PRK06305         79 ASCKEISSGTSLDVLEIDGASH--RGIEDIRQINETVLFTP-----SKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH  151 (451)
T ss_pred             HHHHHHhcCCCCceEEeecccc--CCHHHHHHHHHHHHhhh-----hcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence            2223444444555666654322  11234565554433222     2367899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-Q  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~  239 (354)
                      +.+|++|++..++.++|+|||..++|++++.+++..+|..++.++|+.+++++++.|+..++||+|.|++.|+.++.. +
T Consensus       152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~  231 (451)
T PRK06305        152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFP  231 (451)
T ss_pred             ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987644 3


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH---------------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELL---------------  302 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~---------------  302 (354)
                      ..++.+.  .+.....++.++++++.+..    ++..++...+.+++..|.+|..++..+..++.               
T Consensus       232 ~~It~~~V~~l~~~~~~~~vf~L~~ai~~----~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~~~a  307 (451)
T PRK06305        232 KSLDPDSVAKALGLLSQDSLYTLDEAITT----QNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLSSVA  307 (451)
T ss_pred             CCcCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            3344332  23334466788999988876    67778888889999999999988776654432               


Q ss_pred             HhCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543          303 KRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG  347 (354)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~  347 (354)
                      +.++.+...++++.+.+.+.+++.|.++.+.+|.|+.++...++.
T Consensus       308 ~~~s~~~L~~ii~~l~e~d~~lk~~~~~k~~lE~lll~l~~~~~~  352 (451)
T PRK06305        308 TKYSSEQLLEIIDFLGESAKHIQLTIFEKTFLETVIIHLIRIYQR  352 (451)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhcC
Confidence            246777788999999999999999999999999999999987653

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=5.6e-43  Score=320.81  Aligned_cols=323  Identities=18%  Similarity=0.215  Sum_probs=252.6

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++||||++|+|++||+++++.|++++..++.+| ++|+||+|+||||+|+++|+.+.|........        |..|
T Consensus         5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~p--------c~~c   76 (363)
T PRK14961          5 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNP--------CRKC   76 (363)
T ss_pred             HHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCCC
Confidence            48999999999999999999999999999999999 89999999999999999999998754221110        2222


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|.++....+.+.+++.+...  .....++++++.+... +    ..++++|+||||+|.++..++++|++.+|+++.+
T Consensus        77 ~~c~~~~~~~~~d~~~~~~~~~--~~v~~ir~i~~~~~~~-p----~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~  149 (363)
T PRK14961         77 IICKEIEKGLCLDLIEIDAASR--TKVEEMREILDNIYYS-P----SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH  149 (363)
T ss_pred             HHHHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhcC-c----ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence            2222333333444555544321  1223466666554332 2    2457799999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.||++|++.+++.++++|||..++|+|++.+++..+|.++++++|+.+++++++.+++.++||+|.|++.|+.++..+ 
T Consensus       150 ~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~  229 (363)
T PRK14961        150 IKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGK  229 (363)
T ss_pred             eEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999876543 


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------  303 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------  303 (354)
                      ..++.+.  .+.....+..++++++.+..    ++..++...+.+++..|.+|..++..+...+.+              
T Consensus       230 ~~It~~~v~~~l~~~~~~~i~~l~~ai~~----~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~  305 (363)
T PRK14961        230 GNINIKNVTDMLGLLNEKQSFLLTDALLK----KDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTI  305 (363)
T ss_pred             CCCCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcc
Confidence            3444443  23344467788999999887    566777788888888899999888766655443              


Q ss_pred             --------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 --------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 --------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                    .++.+....+++.+.+...+|..+.+.++.+|.++.++..
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~  359 (363)
T PRK14961        306 FIKNYKNQIQKIAQNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAIN  359 (363)
T ss_pred             cchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHh
Confidence                          1222334445777888888999999999999988887764

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=3.5e-43  Score=335.59  Aligned_cols=322  Identities=18%  Similarity=0.235  Sum_probs=251.2

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++||||++|+|++||+++++.|++.+..|+++| +||+||+|+||||+|+.+|+.++|.......        -|+.|
T Consensus         5 ~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~--------pCg~C   76 (647)
T PRK07994          5 VLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITAT--------PCGEC   76 (647)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCC--------CCCCC
Confidence            47899999999999999999999999999999999 8999999999999999999999886321100        14444


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+.+++++...  .....+|++++.+...+ .    .++++|+||||+|+|+..++|+|+++||+|+.+
T Consensus        77 ~~C~~i~~g~~~D~ieidaas~--~~VddiR~li~~~~~~p-~----~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~  149 (647)
T PRK07994         77 DNCREIEQGRFVDLIEIDAASR--TKVEDTRELLDNVQYAP-A----RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH  149 (647)
T ss_pred             HHHHHHHcCCCCCceeeccccc--CCHHHHHHHHHHHHhhh-h----cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC
Confidence            4445555556666777766532  12245788776654432 2    467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-Q  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~  239 (354)
                      ++||++|+++++++++|+|||+.++|++++.+++..+|.+++.++++.++++++..|+..++|++|+|+++++.+... +
T Consensus       150 v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~  229 (647)
T PRK07994        150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGN  229 (647)
T ss_pred             eEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999865544 3


Q ss_pred             CCCCCCC---CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 018543          240 YPFKDNQ---AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------  303 (354)
Q Consensus       240 ~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------  303 (354)
                      ..++.+.   .+...+ .+.++++++.+..    .+...+...+.+++..+.++..++..+...+.+             
T Consensus       230 ~~it~~~v~~~lg~~d-~~~~~~ll~al~~----~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~  304 (647)
T PRK07994        230 GQVTTDDVSAMLGTLD-DDQALSLLEALVE----GDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDN  304 (647)
T ss_pred             CCcCHHHHHHHHccCC-HHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcc
Confidence            3344322   111122 3456677777765    344556666667777787877666655444332             


Q ss_pred             --------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 --------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 --------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                    .++.+.....++.+.+...+|..+.+.++.+|.++.|+..
T Consensus       305 ~~~d~~~~l~~la~~~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~  358 (647)
T PRK07994        305 DMADIELRLRELARTLPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLA  358 (647)
T ss_pred             cchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence                          2333334456778888889999999999999999988865

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=5.4e-43  Score=337.08  Aligned_cols=324  Identities=17%  Similarity=0.260  Sum_probs=264.4

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++||||++|++++||+++++.|..+++.|+++| +|||||+|+||||+|+.+|+.+.|.....   ++.    .|+.|
T Consensus         6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~---~~~----~Cg~C   78 (614)
T PRK14971          6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTA---DGE----ACNEC   78 (614)
T ss_pred             HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCC----CCCcc
Confidence            49999999999999999999999999999999999 99999999999999999999998865321   111    13444


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.++.++.+.+.  .....++++++.+...+.     .++++|+||||+|.|+.+++++|+++||+|+.+
T Consensus        79 ~sC~~~~~~~~~n~~~ld~~~~--~~vd~Ir~li~~~~~~P~-----~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~  151 (614)
T PRK14971         79 ESCVAFNEQRSYNIHELDAASN--NSVDDIRNLIEQVRIPPQ-----IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY  151 (614)
T ss_pred             hHHHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhhCcc-----cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence            4444555555666677765432  223457777766544332     467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-Q  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~  239 (354)
                      +.||++|+...++.++|+|||.+++|++++.+++..+|.+++.++|+.+++++++.|++.++||+|+|+++|+.++.. +
T Consensus       152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~  231 (614)
T PRK14971        152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTG  231 (614)
T ss_pred             eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987544 3


Q ss_pred             CCCCCCC---CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 018543          240 YPFKDNQ---AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------  303 (354)
Q Consensus       240 ~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------  303 (354)
                      ..++.+.   .+... ..+.+|++++.+..    ++..++...+++++..|++|..|+..+..++..             
T Consensus       232 ~~It~~~V~~~l~~~-~~~~iF~L~dai~~----~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll  306 (614)
T PRK14971        232 GNITYKSVIENLNIL-DYDYYFRLTDALLA----GKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLL  306 (614)
T ss_pred             CCccHHHHHHHhCCC-CHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccc
Confidence            3455432   22333 34667899999887    567788888999999999999888766654432             


Q ss_pred             ---------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543          304 ---------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       304 ---------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~  344 (354)
                                     .++.+.+..+++.+.+.+..++.|.+.++.+|.++.+++..
T Consensus       307 ~v~~~~~~~~~~qa~~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~  362 (614)
T PRK14971        307 EVGESIRQRYLEQAQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQL  362 (614)
T ss_pred             cCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence                           23344556678889999999999999999999999998764

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=3.9e-43  Score=333.49  Aligned_cols=323  Identities=18%  Similarity=0.246  Sum_probs=257.5

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++||||++|+|++||+++++.|++++..++++| +||+||+|+||||+|+++++.++|........        |..|
T Consensus         5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~p--------Cg~C   76 (709)
T PRK08691          5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEP--------CGVC   76 (709)
T ss_pred             hHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCC--------Cccc
Confidence            48899999999999999999999999999999999 89999999999999999999998875321111        2233


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+......+.++++.....  ....++++++.... .+.    .++++|+||||+|.|+..++++|+++||+++.+
T Consensus        77 ~sCr~i~~g~~~DvlEidaAs~~--gVd~IRelle~a~~-~P~----~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~  149 (709)
T PRK08691         77 QSCTQIDAGRYVDLLEIDAASNT--GIDNIREVLENAQY-APT----AGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH  149 (709)
T ss_pred             HHHHHHhccCccceEEEeccccC--CHHHHHHHHHHHHh-hhh----hCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence            33333334444455666654322  22357777765433 222    357899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.|||+|+++.+++++++|||..+.|++++.+++..+|++++.++|+.++++++..|++.++||+|.++++|+.+...+ 
T Consensus       150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~  229 (709)
T PRK08691        150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGS  229 (709)
T ss_pred             cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998776543 


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------  303 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------  303 (354)
                      ..++.+.  .+.....+..++++++.+..    ++...+...+.+++..|+++..++.++...+.+              
T Consensus       230 g~It~e~V~~lLG~~d~~~If~LldAL~~----~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~  305 (709)
T PRK08691        230 GKVAENDVRQMIGAVDKQYLYELLTGIIN----QDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHD  305 (709)
T ss_pred             CCcCHHHHHHHHcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhcccc
Confidence            3455433  22223346789999999988    677788899999999999999888876655443              


Q ss_pred             ------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 ------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                  .++.+......+.+......|....++++.+|..+.|+..
T Consensus       306 ~~~~~~~~~~a~~~~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~  357 (709)
T PRK08691        306 DPDSDILHRLAQTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLA  357 (709)
T ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence                        2333444556777777777888888899999988888765

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=7.5e-43  Score=333.97  Aligned_cols=322  Identities=21%  Similarity=0.297  Sum_probs=263.1

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      |.+||||++|++++||+++++.|++++..++++| +||+||+|+|||++|+.+|+.+.|........        |..|.
T Consensus         6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~p--------C~~C~   77 (559)
T PRK05563          6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEP--------CNECE   77 (559)
T ss_pred             HHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCccH
Confidence            6699999999999999999999999999999999 99999999999999999999999876432111        33444


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~  161 (354)
                      .|..+....+.+++++.+....  ....++++...+... |.    .++++|+||||+|.|+.+++++|++++|+|+.++
T Consensus        78 ~C~~i~~g~~~dv~eidaas~~--~vd~ir~i~~~v~~~-p~----~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~  150 (559)
T PRK05563         78 ICKAITNGSLMDVIEIDAASNN--GVDEIRDIRDKVKYA-PS----EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHV  150 (559)
T ss_pred             HHHHHhcCCCCCeEEeeccccC--CHHHHHHHHHHHhhC-cc----cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCe
Confidence            4445555666777787664322  223577777665433 32    5788999999999999999999999999999999


Q ss_pred             eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-C
Q 018543          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-Y  240 (354)
Q Consensus       162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~  240 (354)
                      .||++|+.+++++++|+|||+.+.|++++.+++..+|..++.++|+.++++++..++..++||+|.|+++|+.+...+ .
T Consensus       151 ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~  230 (559)
T PRK05563        151 IFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDG  230 (559)
T ss_pred             EEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999775543 3


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------
Q 018543          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------------  303 (354)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------------  303 (354)
                      .++.++  .+......+.++++++.+..    ++...+...+.+++..|.++..++..+...+.+               
T Consensus       231 ~It~~~V~~vlg~~~~~~i~~l~~al~~----~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~  306 (559)
T PRK05563        231 KVTYEDALEVTGSVSQEALDDLVDAIVE----GDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDE  306 (559)
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHc----cCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccc
Confidence            444333  22333456678888888887    566677788888888899998887766544332               


Q ss_pred             -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                   .++.+.+.++++.+.+.+..++.+.++++.+|.++.+++.
T Consensus       307 ~~~~~~~~~~~a~~~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~  359 (559)
T PRK05563        307 STENDELFKELSEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCE  359 (559)
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Confidence                         2344556778899999999999999999999999999887

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=8.8e-43  Score=333.27  Aligned_cols=328  Identities=18%  Similarity=0.243  Sum_probs=263.7

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++||||++|+|++||+.+++.|.+++..|+++| +||+||+|+||||+|+++|+.++|.......  +..+. -|..|
T Consensus        13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~--~~~~~-~cg~c   89 (598)
T PRK09111         13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDG--GPTID-LCGVG   89 (598)
T ss_pred             hHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccC--CCccc-cCccc
Confidence            48999999999999999999999999999999998 9999999999999999999999986532110  00000 03333


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+++++.+...  .....+|++++.+.. .++    .++++||||||+|.|+.+++++|+++||+|+.+
T Consensus        90 ~~C~~i~~g~h~Dv~e~~a~s~--~gvd~IReIie~~~~-~P~----~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~  162 (598)
T PRK09111         90 EHCQAIMEGRHVDVLEMDAASH--TGVDDIREIIESVRY-RPV----SARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH  162 (598)
T ss_pred             HHHHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHHh-chh----cCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCC
Confidence            3334455556666777766532  223468888866543 333    467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.|||+|+..++++++|+|||+.++|.+++.+++..||.+++.++|+.+++++++.|++.++||+|.++++|+.+...+ 
T Consensus       163 ~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g~  242 (598)
T PRK09111        163 VKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGA  242 (598)
T ss_pred             eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998776553 


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------  303 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------  303 (354)
                      ..++.++  .+.....+..++++++.+..    ++...+...+.+++..|.+|..++..+.+.+..              
T Consensus       243 g~It~e~V~~llg~~~~~~if~L~~ai~~----gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~  318 (598)
T PRK09111        243 GEVTAEAVRDMLGLADRARVIDLFEALMR----GDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDP  318 (598)
T ss_pred             CCcCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence            3455443  23334456788899998887    567778888888888999999888777654432              


Q ss_pred             ---------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 ---------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 ---------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                     .++...+.++.+.+.+.+..++.+.++.+.+|.++.+++.
T Consensus       319 ~~~p~~~~kl~~~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~  373 (598)
T PRK09111        319 SLSEAERTRGAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAY  373 (598)
T ss_pred             cCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Confidence                           1233446678888889999999999999999999999875

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=100.00  E-value=2e-43  Score=326.83  Aligned_cols=323  Identities=21%  Similarity=0.289  Sum_probs=257.4

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      ...||||++|+|++||+++++.|++.+..+++.| |+|+||.|+||||+||.+|+.+.|........        |..|.
T Consensus         6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP--------C~~C~   77 (515)
T COG2812           6 LARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP--------CGKCI   77 (515)
T ss_pred             HHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc--------chhhh
Confidence            4579999999999999999999999999999999 99999999999999999999999986421111        22222


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~  161 (354)
                      .|.++...+..+.+++.+.....  ...+|++.+.+.- .|    ..+++||+||||+|+|+..+.|+|+|++|+||.++
T Consensus        78 ~Ck~I~~g~~~DviEiDaASn~g--VddiR~i~e~v~y-~P----~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV  150 (515)
T COG2812          78 SCKEINEGSLIDVIEIDAASNTG--VDDIREIIEKVNY-AP----SEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHV  150 (515)
T ss_pred             hhHhhhcCCcccchhhhhhhccC--hHHHHHHHHHhcc-CC----ccccceEEEEecHHhhhHHHHHHHhcccccCccCe
Confidence            22344444445556665433222  2357887766443 33    36899999999999999999999999999999999


Q ss_pred             eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-C
Q 018543          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-Y  240 (354)
Q Consensus       162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~  240 (354)
                      .|||+|+++.++++++.|||+.+.|+.++.+++...|..++.+|++.++++++..+++.++|++|+++++|+.+...+ .
T Consensus       151 ~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~  230 (515)
T COG2812         151 KFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEG  230 (515)
T ss_pred             EEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999887664 3


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------
Q 018543          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------------  303 (354)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------------  303 (354)
                      .++.+.  ..........+.+++..++.    ++..++...+.+++..|.+|..++.++...+.+               
T Consensus       231 ~It~~~v~~~lG~~~~~~~~~~~~~i~~----~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~  306 (515)
T COG2812         231 EITLESVRDMLGLTDIEKLLSLLEAILK----GDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLN  306 (515)
T ss_pred             cccHHHHHHHhCCCCHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhcc
Confidence            455544  12223344667788888887    677788888889999999999998877766543               


Q ss_pred             -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543          304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~  344 (354)
                                   .++......+.+.+......+..+.++++.+|.++.++...
T Consensus       307 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~  360 (515)
T COG2812         307 TTEIEERTKELASQISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEA  360 (515)
T ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhh
Confidence                         01111233356667777777888888999999988888754

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=4.4e-42  Score=323.76  Aligned_cols=324  Identities=19%  Similarity=0.245  Sum_probs=252.1

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++||||++|++++||+++++.|.++++.++.+| +||+||+|+||||+|+.+|+.+.|........        |..|
T Consensus         5 ~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~p--------Cg~C   76 (546)
T PRK14957          5 ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEP--------CNKC   76 (546)
T ss_pred             hHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCC--------Cccc
Confidence            58999999999999999999999999999999999 89999999999999999999998854321100        2233


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+.++++....  .....++++++.+...+.     .++++|+||||+|.|+.+++++|+++||+++.+
T Consensus        77 ~sC~~i~~~~~~dlieidaas~--~gvd~ir~ii~~~~~~p~-----~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~  149 (546)
T PRK14957         77 ENCVAINNNSFIDLIEIDAASR--TGVEETKEILDNIQYMPS-----QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY  149 (546)
T ss_pred             HHHHHHhcCCCCceEEeecccc--cCHHHHHHHHHHHHhhhh-----cCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence            3333444444556666654221  122346777766554332     467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-Q  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~  239 (354)
                      +.||++|++..+++++|+|||..++|.+++.+++..+|.+++.++|+.++++++..|++.++||+|.|+++|+.++.. +
T Consensus       150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~  229 (546)
T PRK14957        150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCG  229 (546)
T ss_pred             ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987654 3


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHH-----------------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE-----------------  300 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~-----------------  300 (354)
                      ..++.+.  .+......+.++++++.+.+    ++...+...+.++...+.+...++..+...                 
T Consensus       230 ~~It~~~V~~~l~~~~~~~v~~ll~Al~~----~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~~~~  305 (546)
T PRK14957        230 GELKQAQIKQMLGIIDSEEVYSIINAIID----NDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVN  305 (546)
T ss_pred             CCCCHHHHHHHHccCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            3344322  11122235568888888876    445555566666666677777666555411                 


Q ss_pred             ---------HHHhCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543          301 ---------LLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       301 ---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~  344 (354)
                               +...++.+....+++.+.....+|..+.+.++.+|-.+.|+...
T Consensus       306 ~~~~~~i~~~a~~~s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~  358 (546)
T PRK14957        306 DIDVDIINNILAKISIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAF  358 (546)
T ss_pred             hhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence                     11234555566678889999999999999999999999888754

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=5.2e-42  Score=317.80  Aligned_cols=331  Identities=17%  Similarity=0.219  Sum_probs=259.4

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccc-ccccccccccCCCc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKV-KVENKTWKIDAGSR   80 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~-~~~~~~~~~~~~~~   80 (354)
                      .++||||++|++++||+.+++.|++++++|+.+| +||+||||+||||+|+++|+.+.|.....- ..... ....|+.|
T Consensus         6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~-~~~~c~~c   84 (397)
T PRK14955          6 IARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE-VTEPCGEC   84 (397)
T ss_pred             HHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc-CCCCCCCC
Confidence            4789999999999999999999999999999999 999999999999999999999998632110 00000 00013444


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+..++.+...  .....++++.+.+... |+    .++++|+||||+|.|+..+++.|++++|++++.
T Consensus        85 ~~c~~~~~~~~~n~~~~~~~~~--~~id~Ir~l~~~~~~~-p~----~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~  157 (397)
T PRK14955         85 ESCRDFDAGTSLNISEFDAASN--NSVDDIRLLRENVRYG-PQ----KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPH  157 (397)
T ss_pred             HHHHHHhcCCCCCeEeeccccc--CCHHHHHHHHHHHhhc-hh----cCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCC
Confidence            4444555555556666654322  1123566666555433 32    467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.||+++++..++.++++|||.+++|++++.+++..++..++.++|+.+++++++.+++.++||+|.+++.|+.+.... 
T Consensus       158 t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~  237 (397)
T PRK14955        158 AIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSV  237 (397)
T ss_pred             eEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999876542 


Q ss_pred             -----CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------
Q 018543          240 -----YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------  303 (354)
Q Consensus       240 -----~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------  303 (354)
                           ..++.+.  .+.....++.++++++.+..    ++..++...+.+++..+.+|..++..+..++..         
T Consensus       238 ~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~----~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~~  313 (397)
T PRK14955        238 ESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVAD----GDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRS  313 (397)
T ss_pred             ccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence                 2344432  23344567788999999887    677778788888888899998877655444322         


Q ss_pred             -------------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543          304 -------------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       304 -------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~  345 (354)
                                         +++.+.....++.+.+++..++.+.++.+.+|.|+.++...-
T Consensus       314 ~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~~  374 (397)
T PRK14955        314 TRLVERPDAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIG  374 (397)
T ss_pred             cccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhC
Confidence                               344445566788899999999999999999999999877643

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=9e-42  Score=326.61  Aligned_cols=329  Identities=16%  Similarity=0.226  Sum_probs=259.6

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcc-cccccccccccCCCcc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEK-VKVENKTWKIDAGSRN   81 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~   81 (354)
                      .+||||++|++++||+++++.|++++.+|+.+| +||+||+|+||||+|+.+|+.++|..... .... ....--|+.|.
T Consensus         7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~-~~~~~~Cg~C~   85 (620)
T PRK14954          7 ARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL-QEVTEPCGECE   85 (620)
T ss_pred             HHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc-cccCCCCccCH
Confidence            689999999999999999999999999999999 99999999999999999999999964211 0000 00000144444


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~  161 (354)
                      .|..+....+.++.++.+...  .....++++.+.+... |+    .++++|+||||+|.|+.+++++|+++||+|+.++
T Consensus        86 sC~~~~~g~~~n~~~~d~~s~--~~vd~Ir~l~e~~~~~-P~----~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~t  158 (620)
T PRK14954         86 SCRDFDAGTSLNISEFDAASN--NSVDDIRQLRENVRYG-PQ----KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHA  158 (620)
T ss_pred             HHHHHhccCCCCeEEeccccc--CCHHHHHHHHHHHHhh-hh----cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCe
Confidence            444555555556555644221  1223577776665433 32    4678999999999999999999999999999999


Q ss_pred             eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--
Q 018543          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ--  239 (354)
Q Consensus       162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~--  239 (354)
                      .||++|++..++.++|+|||++++|.+++.+++..+|.+++.++|+.+++++++.|++.++||+|.++++|+.++...  
T Consensus       159 v~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~  238 (620)
T PRK14954        159 IFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVG  238 (620)
T ss_pred             EEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999876653  


Q ss_pred             ----CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------
Q 018543          240 ----YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----------  303 (354)
Q Consensus       240 ----~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~----------  303 (354)
                          ..++.+.  .+.....++.++++++.+..    ++..++...+.+++..+.+|..|+..+.+++..          
T Consensus       239 ~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~----~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~~  314 (620)
T PRK14954        239 SEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAE----NDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRST  314 (620)
T ss_pred             cccCCccCHHHHHHHHcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence                2344322  23334456788999999887    667778888889999999999888766655433          


Q ss_pred             ------------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543          304 ------------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       304 ------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~  344 (354)
                                        +++...+.+.++.+.+++.+++.+.+..+.+|.++.++...
T Consensus       315 ~l~~~~~~v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~  373 (620)
T PRK14954        315 RLIERPESVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIEL  373 (620)
T ss_pred             ccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Confidence                              12233345568888999999999999999999999998764

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=9.3e-42  Score=324.29  Aligned_cols=323  Identities=18%  Similarity=0.265  Sum_probs=252.5

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++||||++|+|++||+++++.|.+++..++++| +||+||+|+||||+|+.+|+.++|....... .       |+.|
T Consensus         5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~-p-------cg~C   76 (527)
T PRK14969          5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTAT-P-------CGVC   76 (527)
T ss_pred             HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-C-------CCCC
Confidence            47899999999999999999999999999999999 8999999999999999999999886422111 0       3333


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+.+++.+...  .....++++++.+.. .+.    .++++|+||||+|.|+.+++|+|+++||+++.+
T Consensus        77 ~~C~~i~~~~~~d~~ei~~~~~--~~vd~ir~l~~~~~~-~p~----~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~  149 (527)
T PRK14969         77 SACLEIDSGRFVDLIEVDAASN--TQVDAMRELLDNAQY-APT----RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH  149 (527)
T ss_pred             HHHHHHhcCCCCceeEeecccc--CCHHHHHHHHHHHhh-Ccc----cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence            3333444444555666654322  223457777766433 332    467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.||++|+++++++++|+|||+.++|++++.+++..+|.+++.++|+.++++++..|++.++||+|+|+++++.+...+ 
T Consensus       150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~  229 (527)
T PRK14969        150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGG  229 (527)
T ss_pred             EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999776553 


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------  303 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------  303 (354)
                      ..++.+.  .+.....++.++++++.+..    ++...+...+.++...+.++..++..+...+.+              
T Consensus       230 ~~I~~~~v~~~~~~~~~~~i~~ll~al~~----~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~  305 (527)
T PRK14969        230 GTVNESEVRAMLGAIDQDYLFALLEALLA----QDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADD  305 (527)
T ss_pred             CCcCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCccccccc
Confidence            3444332  11122235568888888876    445566677777777788877777655443332              


Q ss_pred             ------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 ------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                  +++++....+++.+.+....+....++++.+|..+.|+..
T Consensus       306 ~~~~~~~~~~a~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~  357 (527)
T PRK14969        306 LPERDRLLDLAKRLSPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLA  357 (527)
T ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhc
Confidence                        3344445556777888888888899999999999988874

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=9e-42  Score=327.37  Aligned_cols=320  Identities=21%  Similarity=0.295  Sum_probs=252.0

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|.+||||++|++++||+.+++.|+.+++.++++| +||+||+|+|||++|+++|+.+.|......          +..|
T Consensus         7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~----------~~pC   76 (725)
T PRK07133          7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL----------LEPC   76 (725)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC----------CCch
Confidence            69999999999999999999999999999999999 899999999999999999999988653211          1112


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..|. ..+.+++++.+..  ......+|++++.+...+.     .++++|+||||+|.|+.+++++|+++||+|+.+
T Consensus        77 ~~C~~~~-~~~~Dvieidaas--n~~vd~IReLie~~~~~P~-----~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~  148 (725)
T PRK07133         77 QECIENV-NNSLDIIEMDAAS--NNGVDEIRELIENVKNLPT-----QSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKH  148 (725)
T ss_pred             hHHHHhh-cCCCcEEEEeccc--cCCHHHHHHHHHHHHhchh-----cCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCc
Confidence            1111221 1233445554321  1223458888876655432     478899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.||++|+++++++++|+|||++++|.+++.+++..+|..++.++|+.++++++..++..++|++|.|+++++.++..+ 
T Consensus       149 tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~  228 (725)
T PRK07133        149 VIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGN  228 (725)
T ss_pred             eEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999876543 


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------  303 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------  303 (354)
                      ..++.+.  .+......+.++++++.+..    ++...+...+.+++..|.+|..++..+...+.+              
T Consensus       229 ~~It~e~V~ellg~~~~e~If~Ll~aI~~----kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~  304 (725)
T PRK07133        229 NKITLKNVEELFGLVSNENLINLLNLLYS----KDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLE  304 (725)
T ss_pred             CCCCHHHHHHHHcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhc
Confidence            2233322  12222344567788888776    566677788888888999999887766554433              


Q ss_pred             ----------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 ----------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 ----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                ..+......+++.+.+...++..+.+.++.+|.++.++..
T Consensus       305 ~~d~~~l~~~~~s~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~  354 (725)
T PRK07133        305 YYSEEDLEKLKIDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLA  354 (725)
T ss_pred             cCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence                      0122233456788889999999999999999999988875

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.9e-41  Score=316.94  Aligned_cols=323  Identities=19%  Similarity=0.254  Sum_probs=254.4

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      -|.+||||++|+|++||+++++.|+.++.+++++| +||+||||+||||+|+++|+.+.|........        |..|
T Consensus         3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~p--------c~~c   74 (472)
T PRK14962          3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEP--------CNEC   74 (472)
T ss_pred             hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCC--------Cccc
Confidence            38899999999999999999999999999999998 89999999999999999999998754321111        2223


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+.+++++.....  ...++++..... ..+.    .++++|+||||+|.|+.+++++|++.+++++++
T Consensus        75 ~~c~~i~~g~~~dv~el~aa~~~g--id~iR~i~~~~~-~~p~----~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~  147 (472)
T PRK14962         75 RACRSIDEGTFMDVIELDAASNRG--IDEIRKIRDAVG-YRPM----EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH  147 (472)
T ss_pred             HHHHHHhcCCCCccEEEeCcccCC--HHHHHHHHHHHh-hChh----cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence            233344444555667777643222  124666554433 3332    357799999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.+|++|+++.++.++++|||.++.|++++.+++..+++.++..+|+.+++++++.|++.++||+|.+++.|+.++... 
T Consensus       148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~  227 (472)
T PRK14962        148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE  227 (472)
T ss_pred             EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence            9999999998999999999999999999999999999999999999999999999999999999999999999876542 


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhC--CH-HHHHHHH
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRL--DA-EIKHEVC  314 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~--~~-~~~~~~~  314 (354)
                      ..++.+.  .+.....++.++++++++..    ++...+...+.+++..|++|..|+..+.......+  .+ .....++
T Consensus       228 ~~It~e~V~~~l~~~~~~~i~~li~si~~----~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~  303 (472)
T PRK14962        228 GKITLETVHEALGLIPIEVVRDYINAIFN----GDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVS  303 (472)
T ss_pred             CCCCHHHHHHHHcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHH
Confidence            3455444  22233355788899988887    67788999999999999999999999888777632  22 4455677


Q ss_pred             HHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          315 HWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       315 ~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                      ..+.....++..-...++..+-.+.+++.
T Consensus       304 ~~~~~~~~~i~~~e~~~~l~~~~~~~~~~  332 (472)
T PRK14962        304 RQLLNILREIKFAEEKRLVCKLGSASIAT  332 (472)
T ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHHHHH
Confidence            77777777777766666655555555554

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=3.9e-42  Score=323.88  Aligned_cols=283  Identities=19%  Similarity=0.267  Sum_probs=232.4

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+||||+|+.+|+.+.|........        |..|
T Consensus         5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~--------Cg~C   76 (605)
T PRK05896          5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC--------CNSC   76 (605)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------Cccc
Confidence            69999999999999999999999999999999998 99999999999999999999999876432211        3444


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+.+++.+...  .....+|++++.+...+ .    .++++|+||||+|.|+.+++++|+++||+|+.+
T Consensus        77 ~sCr~i~~~~h~DiieIdaas~--igVd~IReIi~~~~~~P-~----~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~  149 (605)
T PRK05896         77 SVCESINTNQSVDIVELDAASN--NGVDEIRNIIDNINYLP-T----TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKH  149 (605)
T ss_pred             HHHHHHHcCCCCceEEeccccc--cCHHHHHHHHHHHHhch-h----hCCcEEEEEechHhCCHHHHHHHHHHHHhCCCc
Confidence            4444555566677777765432  22235788776655433 2    356899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~  240 (354)
                      +.+|++|+.++++.++++|||++++|++++.+++..+|..++.++|+.+++++++.+++.++||+|.|++.|+.++....
T Consensus       150 tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~  229 (605)
T PRK05896        150 VVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKN  229 (605)
T ss_pred             EEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998766543


Q ss_pred             -CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 018543          241 -PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK  303 (354)
Q Consensus       241 -~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~  303 (354)
                       .++.+.  .+........++++++++..    ++...+...+.+++..|.+|..++..+...+.+
T Consensus       230 ~~It~e~V~ellg~~~~~~Vf~Ll~AI~~----kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RD  291 (605)
T PRK05896        230 SEIDIEDINKTFGLVDNNKKINLIELIQK----NDIEELRNLINELESKGINFEAFCRDLINLLID  291 (605)
T ss_pred             CCCCHHHHHHHhccCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence             244322  11122233557888888876    567788888999999999999999888877765

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=7e-41  Score=319.02  Aligned_cols=322  Identities=18%  Similarity=0.217  Sum_probs=255.5

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      |.+||||++|+|++||+++++.|+.++++|+++| +||+||+|+||||+|+++|+.+.|........        |..|.
T Consensus         6 l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~p--------C~~C~   77 (563)
T PRK06647          6 TATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMP--------CGECS   77 (563)
T ss_pred             HHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCC--------Cccch
Confidence            6789999999999999999999999999999999 99999999999999999999998864321111        22333


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~  161 (354)
                      .|..+....+.+.+++.+..  ......++++.+.+.. .|.    .++++|+||||+|.|+..++++|++++|+|+.++
T Consensus        78 ~C~~i~~~~~~dv~~idgas--~~~vddIr~l~e~~~~-~p~----~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~  150 (563)
T PRK06647         78 SCKSIDNDNSLDVIEIDGAS--NTSVQDVRQIKEEIMF-PPA----SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYI  150 (563)
T ss_pred             HHHHHHcCCCCCeEEecCcc--cCCHHHHHHHHHHHHh-chh----cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCE
Confidence            23344444445555554322  1122346665554433 332    4678999999999999999999999999999999


Q ss_pred             eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-C
Q 018543          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-Y  240 (354)
Q Consensus       162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~  240 (354)
                      .||++|+++.++.++|+|||+.++|.+++.+++..+|.+++.++|+.++++++..|++.++||+|.|+++|+.++... .
T Consensus       151 vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~  230 (563)
T PRK06647        151 VFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDS  230 (563)
T ss_pred             EEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999776543 3


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------
Q 018543          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------------  303 (354)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------------  303 (354)
                      .++.+.  .+.....+..++++++.+..    ++..++...+.+++..|.+|..++..+...+..               
T Consensus       231 ~It~e~V~~llg~~~~~~if~LidaI~~----~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~  306 (563)
T PRK06647        231 DITLEQIRSKMGLTGDEFLEKLASSILN----EDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIG  306 (563)
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence            344332  12223345678888888887    677788888888988999999888766655433               


Q ss_pred             -----------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 -----------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 -----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                 .++.+...++++.+.+.+..++.+.++.+.+|.++.+++.
T Consensus       307 ~~~e~l~k~~~~~s~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~  357 (563)
T PRK06647        307 IKAERLPEKLREFDLSQIERAISVLLETYRDLQFSVNPRYELEINFSKILR  357 (563)
T ss_pred             ccHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence                       1333445567888889999999999999999999999775

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.1e-40  Score=313.22  Aligned_cols=322  Identities=21%  Similarity=0.240  Sum_probs=254.9

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      +|++||||++|++++||+++++.|+++++.++++| +||+||+|+||||+|+.+|+.+.|....... .       |..|
T Consensus         5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~-p-------c~~c   76 (486)
T PRK14953          5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGE-P-------CGKC   76 (486)
T ss_pred             HHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCC-C-------CCcc
Confidence            79999999999999999999999999999999999 8999999999999999999999875322111 0       2222


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+...++.+.+++.+....  ....++++.+.+. ..|.    .++++|+||||+|.|+.+++++|++++|+++.+
T Consensus        77 ~nc~~i~~g~~~d~~eidaas~~--gvd~ir~I~~~~~-~~P~----~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~  149 (486)
T PRK14953         77 ENCVEIDKGSFPDLIEIDAASNR--GIDDIRALRDAVS-YTPI----KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR  149 (486)
T ss_pred             HHHHHHhcCCCCcEEEEeCccCC--CHHHHHHHHHHHH-hCcc----cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence            22223444445566666543221  2234666655443 3343    467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.+|++|++.++++++++|||+.+.|++++.+++..||.+++.++|+.+++++++.+++.++||+|.|+++|+.++..+ 
T Consensus       150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~  229 (486)
T PRK14953        150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGE  229 (486)
T ss_pred             eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999876553 


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----h--------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-----R--------  304 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-----~--------  304 (354)
                      ..++.+.  .+.....+..++++++.+..    ++...+...+.+++..|.+|..++..+..++..     .        
T Consensus       230 ~~It~~~V~~~lg~~~~~~vf~Li~ai~~----~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~  305 (486)
T PRK14953        230 GKVTIKVVEEFLGIVSQESVRKFLNLLLE----SDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVF  305 (486)
T ss_pred             CCcCHHHHHHHhCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhc
Confidence            2343333  22334456678899999887    567778888889999999999998877776554     1        


Q ss_pred             ----------CCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          305 ----------LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       305 ----------~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                ++.+....+.+.+.+...+|.. .+..+.+|.++.+++.
T Consensus       306 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~  353 (486)
T PRK14953        306 QVEDFYRKLEKPLEALLYLEDVINKAFSEART-RDPLRAYELAILKLLY  353 (486)
T ss_pred             chHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHh
Confidence                      0112234457778888888999 8999999998888864

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=6.8e-41  Score=317.10  Aligned_cols=323  Identities=17%  Similarity=0.239  Sum_probs=247.4

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++||||++|+|++||+++++.|++++++++.+| +||+||+|+||||+|+.+|+.++|....... .       |..|
T Consensus         5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-p-------Cg~C   76 (624)
T PRK14959          5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-P-------CNTC   76 (624)
T ss_pred             hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-C-------Cccc
Confidence            69999999999999999999999999999999877 9999999999999999999999885422111 0       3334


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+.+++++....  ....++++.+.+... +.    .++++||||||+|.|+.+++++|+++||+++.+
T Consensus        77 ~sC~~i~~g~hpDv~eId~a~~~--~Id~iR~L~~~~~~~-p~----~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~  149 (624)
T PRK14959         77 EQCRKVTQGMHVDVVEIDGASNR--GIDDAKRLKEAIGYA-PM----EGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR  149 (624)
T ss_pred             HHHHHHhcCCCCceEEEeccccc--CHHHHHHHHHHHHhh-hh----cCCceEEEEEChHhCCHHHHHHHHHHhhccCCC
Confidence            33345555566667777653221  223466655544432 22    467799999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.||++|++++++.++|+|||++++|++++.+++..+|..++.++++.+++++++.|++.++||+|+|+++|+.+...+ 
T Consensus       150 ~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~  229 (624)
T PRK14959        150 VTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGE  229 (624)
T ss_pred             EEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998765333 


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------  303 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------  303 (354)
                      ..++.+.  .+......+.++++++.+..    .+...+...+.+++..+.++..++..+...+.+              
T Consensus       230 ~~It~d~V~~~lg~~~~e~vfeLl~AL~~----~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~  305 (624)
T PRK14959        230 SRLTIDGARGVLGLAGQELFLRLMEALAA----QDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALAS  305 (624)
T ss_pred             CCcCHHHHHHHhCCCCHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhh
Confidence            3344332  12222234567788888765    455566677777777788887766655544333              


Q ss_pred             ----------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 ----------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 ----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                      +++.......++.+.+...++..+.+.++.+|.++.++..
T Consensus       306 l~i~~~~~~~~~~~A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~  361 (624)
T PRK14959        306 LDLPEDEARQWLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAM  361 (624)
T ss_pred             cccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence                            1222223345667777888888899999999998888653

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=2.5e-40  Score=318.53  Aligned_cols=325  Identities=20%  Similarity=0.263  Sum_probs=252.0

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      +|.+||||++|++++||+++++.|+.++..++.+| +||+||+|+||||+|+++|+.++|.........      .|+.|
T Consensus         5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~------~Cg~C   78 (620)
T PRK14948          5 PLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE------PCGKC   78 (620)
T ss_pred             hHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC------CCccc
Confidence            68999999999999999999999999999998876 999999999999999999999998643211000      13334


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+++++.+..  ......+|++++.... .++    .++++|+||||+|.|+.+++++|+++||+++.+
T Consensus        79 ~~C~~i~~g~h~D~~ei~~~~--~~~vd~IReii~~a~~-~p~----~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~  151 (620)
T PRK14948         79 ELCRAIAAGNALDVIEIDAAS--NTGVDNIRELIERAQF-APV----QARWKVYVIDECHMLSTAAFNALLKTLEEPPPR  151 (620)
T ss_pred             HHHHHHhcCCCccEEEEeccc--cCCHHHHHHHHHHHhh-Chh----cCCceEEEEECccccCHHHHHHHHHHHhcCCcC
Confidence            333444455556666665542  1222467888865443 332    467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~  240 (354)
                      +.||++|+++.++.++|+|||+.++|.+++.+++..+|.+++.++|+.++++++..+++.++||+|+|+++|+.++....
T Consensus       152 tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~  231 (620)
T PRK14948        152 VVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPG  231 (620)
T ss_pred             eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876655


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------
Q 018543          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------------  303 (354)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------------  303 (354)
                      .++.+.  .+.....+..++++++.+..    ++...+...+.+++..+.+|..++..+...+.+               
T Consensus       232 ~It~e~V~~lvg~~~e~~i~~Ll~ai~~----~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~  307 (620)
T PRK14948        232 PITPEAVWDLLGAVPEQDLLNLLKALAS----NDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVA  307 (620)
T ss_pred             CCCHHHHHHHhcCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhh
Confidence            554433  12222335567788888775    344555566666777777777666544443322               


Q ss_pred             --------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 --------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 --------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                    .++......+++.+.+++..++.+.+..+-+|.++.++..
T Consensus       308 i~~d~~~~l~~~A~~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~  361 (620)
T PRK14948        308 VSQQTWDELCKLAKQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLP  361 (620)
T ss_pred             cCHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhc
Confidence                          2333344556777888888999999999999999988765

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=100.00  E-value=2.9e-40  Score=304.62  Aligned_cols=322  Identities=23%  Similarity=0.310  Sum_probs=253.7

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      +|+|||||++|++++||+++++.|..++.+|+.+| +||+||||+|||++++.+++.+.|+.......        |..|
T Consensus         3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~--------c~~c   74 (355)
T TIGR02397         3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEP--------CNEC   74 (355)
T ss_pred             cHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCCC
Confidence            79999999999999999999999999999999998 99999999999999999999998874321111        2223


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+.+++++.+.  .....+++++..+.. .+.    .++++||||||+|.++.++++.|++.+|+++.+
T Consensus        75 ~~c~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~p~----~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~  147 (355)
T TIGR02397        75 ESCKEINSGSSLDVIEIDAASN--NGVDDIREILDNVKY-APS----SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH  147 (355)
T ss_pred             HHHHHHhcCCCCCEEEeecccc--CCHHHHHHHHHHHhc-Ccc----cCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence            2223444444555666665422  122346677766443 332    467799999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~  240 (354)
                      +.+|+++++++++.++++|||..+.|++++.+++..++..++.++|+.+++++++.+++.++||+|.+++.++.++....
T Consensus       148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~  227 (355)
T TIGR02397       148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGN  227 (355)
T ss_pred             eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998776532


Q ss_pred             -CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------
Q 018543          241 -PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------  303 (354)
Q Consensus       241 -~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------  303 (354)
                       .++.++  .+.....+..++++++.+..    ++..++...+.+++..+.+|..++..+..++..              
T Consensus       228 ~~it~~~v~~~~~~~~~~~i~~l~~ai~~----~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i  303 (355)
T TIGR02397       228 GNITYEDVNELLGLVDDEKLIELLEAILN----KDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAV  303 (355)
T ss_pred             CCCCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccc
Confidence             344333  22333456678888888876    566677788888888888888887655554333              


Q ss_pred             -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHH
Q 018543          304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM  342 (354)
Q Consensus       304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~  342 (354)
                                   +++.+....+++.+.+.+.+++.+.+..+.+|.++.+++
T Consensus       304 ~~~~~~~l~~~a~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~  355 (355)
T TIGR02397       304 LESEQEFLKELALKLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL  355 (355)
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence                         223333445677888899999999999999999998764

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=3.8e-40  Score=318.42  Aligned_cols=323  Identities=20%  Similarity=0.257  Sum_probs=258.4

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      |.+||||++|+|++||+++++.|+.++.+++.+| +||+||+|+||||+++.+++.+.|.........       |+.|.
T Consensus         6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~-------c~~c~   78 (585)
T PRK14950          6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP-------CGTCE   78 (585)
T ss_pred             HHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC-------CccCH
Confidence            7799999999999999999999999999999999 899999999999999999999987553210001       22333


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~  161 (354)
                      .|..+....+.+++++++...  .....++++++.+.. .+.    .++++||||||+|.|+.++++.|+++||+++.++
T Consensus        79 ~c~~i~~~~~~d~~~i~~~~~--~~vd~ir~ii~~~~~-~p~----~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~t  151 (585)
T PRK14950         79 MCRAIAEGSAVDVIEMDAASH--TSVDDAREIIERVQF-RPA----LARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHA  151 (585)
T ss_pred             HHHHHhcCCCCeEEEEecccc--CCHHHHHHHHHHHhh-Ccc----cCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCe
Confidence            333444444555666665322  222356776655443 232    4678999999999999999999999999999999


Q ss_pred             eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-C
Q 018543          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-Y  240 (354)
Q Consensus       162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~  240 (354)
                      .||+++++.+++.++++|||+.+.|++++..++..++..++.++|+.++++++..++..++||+|.+++.|+.++.+. .
T Consensus       152 v~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~  231 (585)
T PRK14950        152 IFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGG  231 (585)
T ss_pred             EEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999877642 3


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------
Q 018543          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------------  303 (354)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------------  303 (354)
                      .++.+.  .+.....+..++++++.+..    ++...+...+.+++..|.++..++..+.+.+..               
T Consensus       232 ~It~e~V~~ll~~s~~~~vf~Lidal~~----~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i  307 (585)
T PRK14950        232 EISLSQVQSLLGISGDEEVKALAEALLA----KDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDL  307 (585)
T ss_pred             CCCHHHHHHHhcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccC
Confidence            444433  23344456788999999887    677788888888888899998887755544322               


Q ss_pred             -------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 -------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                   .++.+....++..+.+.+..++.|..+.+.+|.++++++.
T Consensus       308 ~p~~~~~~~~qa~~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~  360 (585)
T PRK14950        308 TADEKAALQKVSQIANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALL  360 (585)
T ss_pred             CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Confidence                         3444456678889999999999998889999999999875

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=100.00  E-value=4.8e-40  Score=288.42  Aligned_cols=271  Identities=24%  Similarity=0.374  Sum_probs=208.9

Q ss_pred             CCcccccCCCCCCCcccCHHHH---HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~   77 (354)
                      |+.+++.||++++|++||++++   +.|.+++++|.+++++|||||||||||+|+.+|+...+                 
T Consensus        12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~-----------------   74 (436)
T COG2256          12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA-----------------   74 (436)
T ss_pred             cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC-----------------
Confidence            4778999999999999999998   68999999999999999999999999999999986511                 


Q ss_pred             CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc
Q 018543           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (354)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~  157 (354)
                                     .+..+++...+..   .++++++.......     .++..|+||||+|++++..|++|+..+|+ 
T Consensus        75 ---------------~f~~~sAv~~gvk---dlr~i~e~a~~~~~-----~gr~tiLflDEIHRfnK~QQD~lLp~vE~-  130 (436)
T COG2256          75 ---------------AFEALSAVTSGVK---DLREIIEEARKNRL-----LGRRTILFLDEIHRFNKAQQDALLPHVEN-  130 (436)
T ss_pred             ---------------ceEEeccccccHH---HHHHHHHHHHHHHh-----cCCceEEEEehhhhcChhhhhhhhhhhcC-
Confidence                           1234444434443   47777776654432     35678999999999999999999999997 


Q ss_pred             cCceeEEEEec-CCC-cccHHHhhhcceeeecCCCHHHHHHHHHHHHH--HcCCC-----CCHHHHHHHHHHcCCCHHHH
Q 018543          158 SASCRLILCCN-SSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK--KEGLQ-----LPSGFATRLAEKSNRSLRRA  228 (354)
Q Consensus       158 ~~~~~~Il~~~-~~~-~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~--~~~~~-----i~~~~l~~i~~~s~gd~R~a  228 (354)
                       ....+|.+|+ +|+ .+.++|+|||+++.|+|++.+++...|++.+.  ..|+.     +++++++.++..++||.|++
T Consensus       131 -G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a  209 (436)
T COG2256         131 -GTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA  209 (436)
T ss_pred             -CeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence             3344555443 333 79999999999999999999999999999544  33544     78999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHH
Q 018543          229 ILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAE  308 (354)
Q Consensus       229 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~  308 (354)
                      +|.||.++.....-.   .+        +.+.++.++... ...+++..+.+|++++              ++.|+    
T Consensus       210 LN~LE~~~~~~~~~~---~~--------~~~~l~~~l~~~-~~~~Dk~gD~hYdliS--------------A~hKS----  259 (436)
T COG2256         210 LNLLELAALSAEPDE---VL--------ILELLEEILQRR-SARFDKDGDAHYDLIS--------------ALHKS----  259 (436)
T ss_pred             HHHHHHHHHhcCCCc---cc--------CHHHHHHHHhhh-hhccCCCcchHHHHHH--------------HHHHh----
Confidence            999998876543211   00        123333333311 1233344455666544              67887    


Q ss_pred             HHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543          309 IKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG  347 (354)
Q Consensus       309 ~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~  347 (354)
                      .|++..+++.+|..||..|++|+.    ||+|++.++|+
T Consensus       260 vRGSD~dAALyylARmi~~GeDp~----yiARRlv~~As  294 (436)
T COG2256         260 VRGSDPDAALYYLARMIEAGEDPL----YIARRLVRIAS  294 (436)
T ss_pred             hccCCcCHHHHHHHHHHhcCCCHH----HHHHHHHHHHH
Confidence            889999999999999999999986    99999999986

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.4e-38  Score=293.85  Aligned_cols=313  Identities=21%  Similarity=0.285  Sum_probs=246.7

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
                      |.|++||||++|+|++||+.+++.+.++++.|+.+| ++||||||+|||++++++++.+.+.....   .+..+      
T Consensus         5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~---~~~~~------   75 (367)
T PRK14970          5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDD---PNEDF------   75 (367)
T ss_pred             HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---CCCCC------
Confidence            679999999999999999999999999999999887 99999999999999999999887743210   00000      


Q ss_pred             ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC
Q 018543           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (354)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~  159 (354)
                                 ....++++..  +......++++++.+...+.     .+++++|+|||+|.++..+++.|++++++++.
T Consensus        76 -----------~~~~~~l~~~--~~~~~~~i~~l~~~~~~~p~-----~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~  137 (367)
T PRK14970         76 -----------SFNIFELDAA--SNNSVDDIRNLIDQVRIPPQ-----TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPA  137 (367)
T ss_pred             -----------CcceEEeccc--cCCCHHHHHHHHHHHhhccc-----cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCC
Confidence                       0111223221  11222346666665443322     45779999999999999999999999999988


Q ss_pred             ceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-
Q 018543          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-  238 (354)
Q Consensus       160 ~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-  238 (354)
                      ++.+|++++...++.++++|||..++|++++.+++..++..++.++|+.+++++++.+++.++||+|.+++.|+.++.+ 
T Consensus       138 ~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~  217 (367)
T PRK14970        138 HAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFC  217 (367)
T ss_pred             ceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999988765 


Q ss_pred             CCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 018543          239 QYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------  303 (354)
Q Consensus       239 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------  303 (354)
                      +..++.+.  .+.....++.++++++.+..    ++..++...+.+++..+.+|..++..+..++..             
T Consensus       218 ~~~it~~~v~~~~~~~~~~~if~l~~ai~~----~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l  293 (367)
T PRK14970        218 GKNITRQAVTENLNILDYDTYINVTDLILE----NKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALL  293 (367)
T ss_pred             CCCCCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccc
Confidence            23344332  12233345678899999887    566667777888888899999887766554332             


Q ss_pred             ---------------hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543          304 ---------------RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       304 ---------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~  344 (354)
                                     +++.+...+.+..+.+.+..++.+.++.+.+|.++.++...
T Consensus       294 ~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~l~lE~~l~~l~~~  349 (367)
T PRK14970        294 EVGEQAKKRYEVQSQKVSQSFLLSGIDIANDCDLKYKLSKNQRLLVELALMQLASI  349 (367)
T ss_pred             cCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhc
Confidence                           23444456678888999999999999999899888887653

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=100.00  E-value=4.7e-38  Score=285.06  Aligned_cols=296  Identities=23%  Similarity=0.337  Sum_probs=231.4

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
                      .+|+|||||++|+|++||+++++.++.+++.|+.|| ++|+||||+|||++++++++++.+                   
T Consensus         9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-------------------   69 (316)
T PHA02544          9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-------------------   69 (316)
T ss_pred             CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-------------------
Confidence            489999999999999999999999999999999999 666999999999999999987511                   


Q ss_pred             ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-CHHHHHHHHHHHhhcc
Q 018543           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-SREAQHSLRRTMEKYS  158 (354)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-~~~~~~~Ll~~le~~~  158 (354)
                                   ..+++++.+ +.  ...+++.+..+....+.    .+++++|||||+|.+ +.++++.|..++++++
T Consensus        70 -------------~~~~i~~~~-~~--~~~i~~~l~~~~~~~~~----~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~  129 (316)
T PHA02544         70 -------------EVLFVNGSD-CR--IDFVRNRLTRFASTVSL----TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS  129 (316)
T ss_pred             -------------cceEeccCc-cc--HHHHHHHHHHHHHhhcc----cCCCeEEEEECcccccCHHHHHHHHHHHHhcC
Confidence                         113344443 11  12344545444444332    245799999999999 6778888988999999


Q ss_pred             CceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Q 018543          159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLE-------FIAKKEGLQLPSGFATRLAEKSNRSLRRAILS  231 (354)
Q Consensus       159 ~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~-------~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~  231 (354)
                      .++.+|++||..+++.++++|||..+.|++|+.++...++.       .++.++|+.++++++..+++.+.||+|++++.
T Consensus       130 ~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~  209 (316)
T PHA02544        130 KNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINE  209 (316)
T ss_pred             CCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence            99999999999999999999999999999999988775544       44556899999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHH
Q 018543          232 FETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKH  311 (354)
Q Consensus       232 L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~~~~  311 (354)
                      ++.++.. ..++... +.. -+...++++++.+..    .+..+.+. ....  .+.++..++..+.+.+...+.+..+.
T Consensus       210 l~~~~~~-~~i~~~~-l~~-~~~~~~~~l~~~l~~----~d~~~~~~-~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~  279 (316)
T PHA02544        210 LQRYAST-GKIDAGI-LSE-VTNSDIDDVVEALKA----KDFKAVRA-LAPN--YANDYASFVGKLYDELYPQVTPPSII  279 (316)
T ss_pred             HHHHHcc-CCCCHHH-HHH-hhHHHHHHHHHHHHc----CCHHHHHH-HHHH--hccCHHHHHHHHHHHHHHhCCHHHHH
Confidence            9987643 3333222 111 123445566665543    34444444 3322  26788999999988888888888889


Q ss_pred             HHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543          312 EVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       312 ~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~  345 (354)
                      ++.+.++.++.++..|.++.+|+|+|++++|..+
T Consensus       280 ~~~~~l~~~~~~~~~~~~~~l~le~~l~~~~~~~  313 (316)
T PHA02544        280 RLIEIIGENNQYHGFAADQEIHLLYLLTQLMLEC  313 (316)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999754

>PRK04132 replication factor C small subunit; Provisional

Probab=100.00  E-value=8e-38  Score=305.74  Aligned_cols=272  Identities=31%  Similarity=0.471  Sum_probs=232.4

Q ss_pred             EEEeC--CCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHH
Q 018543           37 LLFYG--PPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI  114 (354)
Q Consensus        37 ~ll~G--p~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~  114 (354)
                      .+..|  |++.||||+|+++|+++++.+.                           ..+++++++++....  ..+++.+
T Consensus       567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~---------------------------~~~~lElNASd~rgi--d~IR~iI  617 (846)
T PRK04132        567 NFIGGNLPTVLHNTTAALALARELFGENW---------------------------RHNFLELNASDERGI--NVIREKV  617 (846)
T ss_pred             hhhcCCCCCcccHHHHHHHHHHhhhcccc---------------------------cCeEEEEeCCCcccH--HHHHHHH
Confidence            56678  8889999999999999865421                           134688998885433  3689999


Q ss_pred             HHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHH
Q 018543          115 KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQI  194 (354)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~  194 (354)
                      +.++...+.   +..+++|+||||+|.|+.++|++|+++||+|+.+++||++||++++++++|+|||+.++|++++.+++
T Consensus       618 k~~a~~~~~---~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i  694 (846)
T PRK04132        618 KEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI  694 (846)
T ss_pred             HHHHhcCCc---CCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHH
Confidence            888877665   22357999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhH
Q 018543          195 VKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKR  272 (354)
Q Consensus       195 ~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~  272 (354)
                      ...|.+++.++|+.++++++..|+..++||+|+|++.||.++.....++.+.  .+......+.+++++..++.    .+
T Consensus       695 ~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~----~~  770 (846)
T PRK04132        695 AKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALK----GN  770 (846)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhc----Cc
Confidence            9999999999999999999999999999999999999998876655565544  11222233466777776665    56


Q ss_pred             HHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543          273 LFQVRGKLYELL-LNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       273 ~~~~~~~~~~l~-~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~  344 (354)
                      +.+++..+++++ ..|+++..++.+++..+.. .+++..+..++..+++|+.++..|+++.+||++|++++|.+
T Consensus       771 ~~~ar~~l~ell~~~G~~~~~iL~~l~~~l~~~~i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~~  844 (846)
T PRK04132        771 FLKAREKLREILLKQGLSGEDVLVQMHREVFNLPIDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTLM  844 (846)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHhh
Confidence            889999999998 6899999999999999877 57888999999999999999999999999999999999864

>PRK04195 replication factor C large subunit; Provisional

Probab=100.00  E-value=6.4e-38  Score=297.77  Aligned_cols=297  Identities=25%  Similarity=0.371  Sum_probs=233.8

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhc---CC-CCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE---QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~---~~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      |+|+|||||+++++++||+++++.|..|++.   |. .+++||+||||+||||+|+++|+++.                 
T Consensus         2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~-----------------   64 (482)
T PRK04195          2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG-----------------   64 (482)
T ss_pred             CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----------------
Confidence            8999999999999999999999999999874   44 34599999999999999999999761                 


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH----HHHHHHHH
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----EAQHSLRR  152 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----~~~~~Ll~  152 (354)
                                     ..++++++++....  ..++..+.......++.   ..+++||||||+|.++.    ..+++|++
T Consensus        65 ---------------~~~ielnasd~r~~--~~i~~~i~~~~~~~sl~---~~~~kvIiIDEaD~L~~~~d~~~~~aL~~  124 (482)
T PRK04195         65 ---------------WEVIELNASDQRTA--DVIERVAGEAATSGSLF---GARRKLILLDEVDGIHGNEDRGGARAILE  124 (482)
T ss_pred             ---------------CCEEEEcccccccH--HHHHHHHHHhhccCccc---CCCCeEEEEecCcccccccchhHHHHHHH
Confidence                           11355666554332  24566665555544431   13679999999999976    56889999


Q ss_pred             HHhhccCceeEEEEecCCCcccH-HHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Q 018543          153 TMEKYSASCRLILCCNSSSKVTE-AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS  231 (354)
Q Consensus       153 ~le~~~~~~~~Il~~~~~~~l~~-~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~  231 (354)
                      +++.  ....+|++||++..+.+ ++++||..++|++|+..++..+|..++.++|+.+++++++.|++.++||+|.|++.
T Consensus       125 ~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~  202 (482)
T PRK04195        125 LIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAIND  202 (482)
T ss_pred             HHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            9985  44779999999988777 89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCH-H
Q 018543          232 FETCRVQQYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDA-E  308 (354)
Q Consensus       232 L~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~-~  308 (354)
                      |+.++.....++.+.  .+...+++..+++++..++..   ++...+...+++   ..++|..++..+.+++...+.+ +
T Consensus       203 Lq~~a~~~~~it~~~v~~~~~~d~~~~if~~l~~i~~~---k~~~~a~~~~~~---~~~~~~~i~~~l~en~~~~~~~~~  276 (482)
T PRK04195        203 LQAIAEGYGKLTLEDVKTLGRRDREESIFDALDAVFKA---RNADQALEASYD---VDEDPDDLIEWIDENIPKEYDDPE  276 (482)
T ss_pred             HHHHhcCCCCCcHHHHHHhhcCCCCCCHHHHHHHHHCC---CCHHHHHHHHHc---ccCCHHHHHHHHHhccccccCCHH
Confidence            999765545555443  233466778889999998863   334455554544   5689999999999988876443 3


Q ss_pred             HH---HHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543          309 IK---HEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       309 ~~---~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~  344 (354)
                      ..   ...+..+..|..++..+.+  ++|..|.+.+|..
T Consensus       277 ~~~~a~~~ls~ad~~~~~~~~~~~--~~l~~~~~~~m~~  313 (482)
T PRK04195        277 DIARAYDALSRADIFLGRVKRTQN--YDLWRYASDLMTA  313 (482)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhcCC--cchHHHHHHHhhh
Confidence            22   4577777788888887665  8999999998764

>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]

Probab=100.00  E-value=1.5e-37  Score=264.58  Aligned_cols=310  Identities=25%  Similarity=0.326  Sum_probs=245.6

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      |+|+|||||.+++|+++|++++..+.+....++.||+|||||||+|||+.+.+.|+.++++...                
T Consensus        29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~----------------   92 (360)
T KOG0990|consen   29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPT----------------   92 (360)
T ss_pred             CCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCc----------------
Confidence            6899999999999999999999999999999999999999999999999999999999775211                


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC-CCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID-TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~  159 (354)
                                ....++++.++....+  .+|+.++.++.+.... .+....++++|+||+|.|+.++|++|++.+|++..
T Consensus        93 ----------~~m~lelnaSd~rgid--~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~  160 (360)
T KOG0990|consen   93 ----------TSMLLELNASDDRGID--PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTA  160 (360)
T ss_pred             ----------hhHHHHhhccCccCCc--chHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhcc
Confidence                      1123567777655544  5677777777665421 12234789999999999999999999999999999


Q ss_pred             ceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       160 ~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~  239 (354)
                      +++|++++|++.++.++++|||+.++|.|++.++...++.++++.+...++++....++..+.||+|.|+|.||..+...
T Consensus       161 n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~  240 (360)
T KOG0990|consen  161 NTRFATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKV  240 (360)
T ss_pred             ceEEEEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877664


Q ss_pred             CCCCCCC----------CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-hCCH
Q 018543          240 YPFKDNQ----------AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-RLDA  307 (354)
Q Consensus       240 ~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~il~~l~~~~~~-~~~~  307 (354)
                      ...+...          ..+.+   ..+..+.+.++...    +.++...+-++.. .++.-.+++..+...+.. .+..
T Consensus       241 ~~~~e~~~~~~~vy~c~g~p~~---~dI~~I~~~il~~~----~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~~~~~  313 (360)
T KOG0990|consen  241 MERKELNNPNDLVYQCKGAPQP---SDIRQIIEKRMNGE----DIELMLDDSELKKPKGLARQDRRAELEQRFAIVISKT  313 (360)
T ss_pred             CCCCCCCCchhhHHHhcCCCCh---hHHHHHHHHHhcCc----hHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcch
Confidence            4333222          11111   24455555555532    2222222222221 355566777777766665 4445


Q ss_pred             HHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543          308 EIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       308 ~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~  345 (354)
                      ..+..++...+..++++..|.++.+|+.+.|+.+....
T Consensus       314 ~~~~~I~~~l~~Ie~~ls~g~~~~~ql~aii~~~~~~~  351 (360)
T KOG0990|consen  314 PVEGHILYQLADIEERLSKGCMQKEQLKAIIKNFAAEL  351 (360)
T ss_pred             HHHHHHHHhHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999998887654

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=100.00  E-value=4.8e-32  Score=244.51  Aligned_cols=283  Identities=16%  Similarity=0.259  Sum_probs=203.3

Q ss_pred             CCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      ++|++++||+.+++.|..++++|+.+| +||+||+|+|||++|+.+++.++|......                      
T Consensus         1 m~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~----------------------   58 (313)
T PRK05564          1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE----------------------   58 (313)
T ss_pred             CChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC----------------------
Confidence            478999999999999999999999999 899999999999999999999987643211                      


Q ss_pred             cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEec
Q 018543           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN  168 (354)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~  168 (354)
                        +++...+.+.+........++++++.+... |.    .++++|+|||++|.|+.+++|+|+++||+||+++.||++|+
T Consensus        59 --h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~-p~----~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~  131 (313)
T PRK05564         59 --YVDIIEFKPINKKSIGVDDIRNIIEEVNKK-PY----EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCE  131 (313)
T ss_pred             --CCCeEEeccccCCCCCHHHHHHHHHHHhcC-cc----cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence              122233333222222334577777665443 33    46889999999999999999999999999999999999999


Q ss_pred             CCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 018543          169 SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAI  248 (354)
Q Consensus       169 ~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~~~~~~~  248 (354)
                      ++++++++|+|||++++|++++.+++..||.+...    .++++.++.++..++|+.++|...+......          
T Consensus       132 ~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~~~----------  197 (313)
T PRK05564        132 NLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDSLK----------  197 (313)
T ss_pred             ChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccHHH----------
Confidence            99999999999999999999999999999986442    4678889999999999999988765321110          


Q ss_pred             CCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHH---------------------------HHHH
Q 018543          249 PAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRL---------------------------LYEL  301 (354)
Q Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l---------------------------~~~~  301 (354)
                         ..++.++++++.+...    +.......+..+...+.++..++..+                           ...+
T Consensus       198 ---~~~~~~~~~~~~l~~~----~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~  270 (313)
T PRK05564        198 ---NIRNMSLEILKDIKKS----NINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHI  270 (313)
T ss_pred             ---HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHH
Confidence               0122333333333321    11111111222222222332222221                           2223


Q ss_pred             HHhCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHH
Q 018543          302 LKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM  342 (354)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~  342 (354)
                      .+.++......+++.+.+++..+..+.+..+.+|.++.++.
T Consensus       271 a~~~s~~~L~~~~~~l~~~~~~l~~n~n~~l~le~lll~~~  311 (313)
T PRK05564        271 SEKFSYKKLNKMIEIINDTRDNLSSNVNPTLVFDSMLIKMQ  311 (313)
T ss_pred             HhhCCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhhh
Confidence            34556666777889999999999999999999999998763

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=100.00  E-value=6.5e-34  Score=245.86  Aligned_cols=276  Identities=19%  Similarity=0.316  Sum_probs=205.4

Q ss_pred             CcccccCCCCCCCcccCHHHH---HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543            2 LWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~   78 (354)
                      +..|+.||++++|.+||++++   ..|+..++++++|.++|||||||||||+|+.++..--.                  
T Consensus       127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~------------------  188 (554)
T KOG2028|consen  127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKK------------------  188 (554)
T ss_pred             ChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCC------------------
Confidence            568999999999999999987   47888999999999999999999999999999873211                  


Q ss_pred             CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc
Q 018543           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (354)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~  158 (354)
                                 .+..++++.+...+..   .+|++++...+...+    .+++.|+||||++++++..|+.|+..+|.  
T Consensus       189 -----------~SyrfvelSAt~a~t~---dvR~ife~aq~~~~l----~krkTilFiDEiHRFNksQQD~fLP~VE~--  248 (554)
T KOG2028|consen  189 -----------HSYRFVELSATNAKTN---DVRDIFEQAQNEKSL----TKRKTILFIDEIHRFNKSQQDTFLPHVEN--  248 (554)
T ss_pred             -----------CceEEEEEeccccchH---HHHHHHHHHHHHHhh----hcceeEEEeHHhhhhhhhhhhcccceecc--
Confidence                       0123456665555544   377777765554443    35678999999999999999999999987  


Q ss_pred             CceeEEEEec-CCC-cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----c----C-----CCCCHHHHHHHHHHcCC
Q 018543          159 ASCRLILCCN-SSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----E----G-----LQLPSGFATRLAEKSNR  223 (354)
Q Consensus       159 ~~~~~Il~~~-~~~-~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~----~-----~~i~~~~l~~i~~~s~g  223 (354)
                      ....+|..|+ +|+ .+..++.|||.++.+.+++.+.+..+|.+...-    +    +     +.+++.++++++..+.|
T Consensus       249 G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG  328 (554)
T KOG2028|consen  249 GDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG  328 (554)
T ss_pred             CceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence            3355666544 343 799999999999999999999999999985431    1    1     23678899999999999


Q ss_pred             CHHHHHHHHHHHHhc----CCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 018543          224 SLRRAILSFETCRVQ----QYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLY  299 (354)
Q Consensus       224 d~R~ai~~L~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~  299 (354)
                      |.|.|+|.||.....    ...-+ +..+.       +.++-+.+..  +..-++++.+.+|+.++              
T Consensus       329 DaR~aLN~Lems~~m~~tr~g~~~-~~~lS-------idDvke~lq~--s~~~YDr~Ge~HYntIS--------------  384 (554)
T KOG2028|consen  329 DARAALNALEMSLSMFCTRSGQSS-RVLLS-------IDDVKEGLQR--SHILYDRAGEEHYNTIS--------------  384 (554)
T ss_pred             hHHHHHHHHHHHHHHHHhhcCCcc-cceec-------HHHHHHHHhh--ccceecccchhHHHHHH--------------
Confidence            999999999976322    11110 11111       2222222221  12334556666776544              


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543          300 ELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG  347 (354)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~  347 (354)
                      ++.|+    .|+...++..+|..||.+|+++++    ++||+|..+|+
T Consensus       385 A~HKS----mRG~D~nAslY~LaRMLegGEdPL----YVARRlvR~AS  424 (554)
T KOG2028|consen  385 ALHKS----MRGSDQNASLYWLARMLEGGEDPL----YVARRLVRFAS  424 (554)
T ss_pred             HHHHh----hcCCccchHHHHHHHHHccCCCcH----HHHHHHHHHhh
Confidence            56665    677888899999999999999998    99999999986

>PRK13342 recombination factor protein RarA; Reviewed

Probab=100.00  E-value=4.5e-32  Score=253.19  Aligned_cols=280  Identities=21%  Similarity=0.276  Sum_probs=200.7

Q ss_pred             CcccccCCCCCCCcccCHHHHHH---HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQN---LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~---l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~   78 (354)
                      +|++||||++|+|++||++++..   |..+++++..++++|+||||+||||+|+.+++.+...                 
T Consensus         1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-----------------   63 (413)
T PRK13342          1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-----------------   63 (413)
T ss_pred             ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----------------
Confidence            69999999999999999999766   9999999998899999999999999999999865210                 


Q ss_pred             CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc
Q 018543           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (354)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~  158 (354)
                                     .+.+++...+.   ..++++++.......     .++..++||||+|.++...++.|++.+|+  
T Consensus        64 ---------------~~~l~a~~~~~---~~ir~ii~~~~~~~~-----~g~~~vL~IDEi~~l~~~~q~~LL~~le~--  118 (413)
T PRK13342         64 ---------------FEALSAVTSGV---KDLREVIEEARQRRS-----AGRRTILFIDEIHRFNKAQQDALLPHVED--  118 (413)
T ss_pred             ---------------EEEEecccccH---HHHHHHHHHHHHhhh-----cCCceEEEEechhhhCHHHHHHHHHHhhc--
Confidence                           12223222221   235556655433221     23568999999999999999999999986  


Q ss_pred             CceeEEEEecC-C-CcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543          159 ASCRLILCCNS-S-SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE--GL-QLPSGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       159 ~~~~~Il~~~~-~-~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~--~~-~i~~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                      ....+|.+++. + ..+.++++|||.++.|++++.+++..++.+.+...  ++ .+++++++.+++.++||+|++++.|+
T Consensus       119 ~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le  198 (413)
T PRK13342        119 GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE  198 (413)
T ss_pred             CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence            33445554433 2 37889999999999999999999999999987653  55 88999999999999999999999999


Q ss_pred             HHHhcCCCCCCCC--CCC------CCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh-
Q 018543          234 TCRVQQYPFKDNQ--AIP------AMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR-  304 (354)
Q Consensus       234 ~~~~~~~~~~~~~--~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~-  304 (354)
                      .++.....++.+.  .+.      ...-.+...+++..+.++-...+...+..++-.++..|++|..|...+....... 
T Consensus       199 ~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi  278 (413)
T PRK13342        199 LAALGVDSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI  278 (413)
T ss_pred             HHHHccCCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence            8765433333322  000      0000122345555544432224566788889999999999999999887776653 


Q ss_pred             -CCHHHHHHHHHHHHHHhhH
Q 018543          305 -LDAEIKHEVCHWAAYYEHK  323 (354)
Q Consensus       305 -~~~~~~~~~~~~~~~~~~~  323 (354)
                       +.+.....+...+...-.+
T Consensus       279 g~a~~~~~~~~~~~~~~~~~  298 (413)
T PRK13342        279 GLADPNALQVAVAAADAVER  298 (413)
T ss_pred             cccCHHHHHHHHHHHHHHHH
Confidence             3333344444444444333

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=100.00  E-value=6.6e-31  Score=236.37  Aligned_cols=307  Identities=19%  Similarity=0.221  Sum_probs=215.1

Q ss_pred             CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee
Q 018543           18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   96 (354)
                      +....+.+.+.+++|+.+| +||+||+|+||+++|+++|+.++|........        |+.|+.|..+...++++...
T Consensus         7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~--------Cg~C~sC~~~~~g~HPD~~~   78 (334)
T PRK07993          7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKS--------CGHCRGCQLMQAGTHPDYYT   78 (334)
T ss_pred             ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCC--------CCCCHHHHHHHcCCCCCEEE
Confidence            5677889999999999999 99999999999999999999999975432111        44455445566677777777


Q ss_pred             eCCCCC-CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccH
Q 018543           97 LSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE  175 (354)
Q Consensus        97 ~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~  175 (354)
                      +.+... .......+|++.+.+...+.     .+++||+|||++|.|+.+++|+|+|+|||||+++.||++|++++++++
T Consensus        79 i~p~~~~~~I~idqiR~l~~~~~~~~~-----~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLp  153 (334)
T PRK07993         79 LTPEKGKSSLGVDAVREVTEKLYEHAR-----LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLA  153 (334)
T ss_pred             EecccccccCCHHHHHHHHHHHhhccc-----cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChH
Confidence            766543 22344578888877766543     478899999999999999999999999999999999999999999999


Q ss_pred             HHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCC-C-CCCCCCCCC
Q 018543          176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-YPF-K-DNQAIPAMD  252 (354)
Q Consensus       176 ~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~~~-~-~~~~~~~~~  252 (354)
                      ||+|||+.+.|++|+.+++..+|.+     ...++++.+..++..++|++++|+.+++.-.... ..+ . ....+...+
T Consensus       154 TIrSRCq~~~~~~~~~~~~~~~L~~-----~~~~~~~~a~~~~~la~G~~~~Al~l~~~~~~~~r~~~~~~l~~~~~~~~  228 (334)
T PRK07993        154 TLRSRCRLHYLAPPPEQYALTWLSR-----EVTMSQDALLAALRLSAGAPGAALALLQPERWQQREALCQALAYALPSGD  228 (334)
T ss_pred             HHHhccccccCCCCCHHHHHHHHHH-----ccCCCHHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999974     2246677788899999999999998875311000 000 0 000000011


Q ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHH-HH---HHHHHHHHhCCHHHHHHHHHHHHHHhhHhhC--
Q 018543          253 WEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVV-LK---RLLYELLKRLDAEIKHEVCHWAAYYEHKMRR--  326 (354)
Q Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i-l~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--  326 (354)
                      ..    +++..+-+.+...-+.-....+.|++.-......+ ..   +....+...++.......++.+.++..++..  
T Consensus       229 ~~----~~~~~~~~~~~~~~L~~l~~~~rD~l~~~~~~~~~~n~d~~~~i~~~a~~~~~~~l~~~~~~l~~~~~~l~~~~  304 (334)
T PRK07993        229 WL----SLLPALNHEQAPARLHWLATLLMDALKRQHGAAYVTNQDQPPLVAQLANHLSPARLQAILGDVCHCREQLLSVT  304 (334)
T ss_pred             HH----HHHHHHcccCHHHHHHHHHHHHHHHHHHhcCCcceeCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            11    12222111111112233334455554322211111 11   2223444566777777889999999999985  


Q ss_pred             CCChhHhHHHHHHHHHHHHH
Q 018543          327 GNKAIFHLEAFVAKFMSIYK  346 (354)
Q Consensus       327 ~~~~~l~l~~~i~~~~~~~~  346 (354)
                      +.|..+.+|.++.++...+.
T Consensus       305 N~N~~L~le~lll~~~~~~~  324 (334)
T PRK07993        305 GVNRELLLTDLLLRIEHYLQ  324 (334)
T ss_pred             CCCHHHHHHHHHHHHHHHHc
Confidence            88899999999988866554

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=100.00  E-value=4.4e-31  Score=241.85  Aligned_cols=203  Identities=21%  Similarity=0.358  Sum_probs=164.0

Q ss_pred             CCCCcccCHHHHHHHHHHHhcCC---------CCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543           11 TLDQVIVHQDIAQNLKKLVTEQD---------CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~~~---------~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .|++++||+++++.|++++..++         .+| +||+||+|+|||++|+.+|+.++|.....  .       .|+.|
T Consensus         3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~--~-------~Cg~C   73 (394)
T PRK07940          3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDE--P-------GCGEC   73 (394)
T ss_pred             hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCC--C-------CCCCC
Confidence            58999999999999999999877         788 99999999999999999999999875320  0       13444


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      +.|..+....+++...+.+.... .....+|++++.+...+.     .++++|+||||+|.|+++++|+|+++||+|+.+
T Consensus        74 ~~C~~~~~~~hpD~~~i~~~~~~-i~i~~iR~l~~~~~~~p~-----~~~~kViiIDead~m~~~aanaLLk~LEep~~~  147 (394)
T PRK07940         74 RACRTVLAGTHPDVRVVAPEGLS-IGVDEVRELVTIAARRPS-----TGRWRIVVIEDADRLTERAANALLKAVEEPPPR  147 (394)
T ss_pred             HHHHHHhcCCCCCEEEecccccc-CCHHHHHHHHHHHHhCcc-----cCCcEEEEEechhhcCHHHHHHHHHHhhcCCCC
Confidence            43344444555555555544322 223457887766654332     467899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                      +.||++|++++.++++|+|||+.++|++|+.+++..+|.+   +.+  ++++.+..++..++|++++|+.+++
T Consensus       148 ~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~~  215 (394)
T PRK07940        148 TVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLAT  215 (394)
T ss_pred             CeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHhc
Confidence            9999999999999999999999999999999999999973   224  5688899999999999999987653

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=100.00  E-value=3.9e-31  Score=239.17  Aligned_cols=220  Identities=21%  Similarity=0.333  Sum_probs=171.4

Q ss_pred             ccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543            6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (354)
Q Consensus         6 kyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
                      ..+|+.+++++||+++.+.|...+++|+.+| +||+||+|+||||+++.+|+.++|.........+.  ...|..|..|.
T Consensus        16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~--~~~~~~c~~c~   93 (351)
T PRK09112         16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL--ADPDPASPVWR   93 (351)
T ss_pred             CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc--CCCCCCCHHHH
Confidence            3689999999999999999999999999999 99999999999999999999999853211110000  00122333333


Q ss_pred             cccccccCceeeeCC-CCCC------CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc
Q 018543           85 ELTTLSSANHVELSP-SDAG------FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (354)
Q Consensus        85 ~~~~~~~~~~i~~~~-~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~  157 (354)
                      .+...++++...+.. .+..      ......+|++.+.+....     ..++++|+||||+|.|+.+++|+|++++|+|
T Consensus        94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~-----~~g~~rVviIDeAd~l~~~aanaLLk~LEEp  168 (351)
T PRK09112         94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS-----GDGNWRIVIIDPADDMNRNAANAILKTLEEP  168 (351)
T ss_pred             HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc-----ccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence            444455566554432 1111      111235666665555433     2467899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 018543          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (354)
Q Consensus       158 ~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~  234 (354)
                      +.++.||++|+++++++++++|||+.++|+|++.+++..+|.+.....+  ++++++..+++.++|++|.|+++++.
T Consensus       169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~  243 (351)
T PRK09112        169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY  243 (351)
T ss_pred             CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999998554333  77899999999999999999999864

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=100.00  E-value=1.9e-30  Score=231.72  Aligned_cols=286  Identities=15%  Similarity=0.178  Sum_probs=194.2

Q ss_pred             CCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccc
Q 018543           11 TLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (354)
                      .|++++||+++++.|...+++|+++| +||+||+|+||+++|+++|+.++|...             |+.|..| .+...
T Consensus         2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~-------------c~~c~~~-~~~~~   67 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGS-------------PSKNIRR-RLEEG   67 (314)
T ss_pred             cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC-------------CCCcHhc-ccccC
Confidence            58899999999999999999999988 999999999999999999999998752             1111111 13333


Q ss_pred             ccCceeeeCCCC---C------------------CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHH
Q 018543           90 SSANHVELSPSD---A------------------GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQH  148 (354)
Q Consensus        90 ~~~~~i~~~~~~---~------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~  148 (354)
                      ++++...+.|..   .                  .......+|++.+.+.. .|.    .++++|+|||++|.|+.+++|
T Consensus        68 ~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~-~p~----~~~~kVvII~~ae~m~~~aaN  142 (314)
T PRK07399         68 NHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSR-PPL----EAPRKVVVIEDAETMNEAAAN  142 (314)
T ss_pred             CCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHcc-Ccc----cCCceEEEEEchhhcCHHHHH
Confidence            444444433320   0                  01112346676655443 333    568899999999999999999


Q ss_pred             HHHHHHhhccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 018543          149 SLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA  228 (354)
Q Consensus       149 ~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~a  228 (354)
                      +|+++||+|+ ++.||++|++++++++||+|||+.++|++++.+++..+|.+....++..   .....++..++|++|+|
T Consensus       143 aLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~a  218 (314)
T PRK07399        143 ALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAA  218 (314)
T ss_pred             HHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHH
Confidence            9999999999 7899999999999999999999999999999999999999865433332   23578899999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChH---HHHHHHHHHHHHhC
Q 018543          229 ILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPV---VVLKRLLYELLKRL  305 (354)
Q Consensus       229 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~il~~l~~~~~~~~  305 (354)
                      ++.++.....               ...+...+..+.     .+...+... -+.+....+-.   .++..+...+... 
T Consensus       219 l~~l~~~~~~---------------~~~~~~~~~~~~-----~~~~~~~~~-a~~~~~~~~~e~Q~~~l~~~~~~~~~~-  276 (314)
T PRK07399        219 IANIEQLQSI---------------PPELLQKLEQPP-----KSPLEALEL-AKDISEELDIEQQLWLIDYLQQHYWQK-  276 (314)
T ss_pred             HHHHHHHHHH---------------HHHHHHHHHhcc-----cCHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHh-
Confidence            9988754210               011111111111     111122211 11122111111   1222221112111 


Q ss_pred             CHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          306 DAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                        .....+++.+......+..+.++.+.++.+..++..
T Consensus       277 --~~~~~~~~~l~~a~~~l~~nvn~~lv~e~~~l~l~~  312 (314)
T PRK07399        277 --TKNRQLLKQLEKLRKQLLSYVQPRLAWEVTLLELSQ  312 (314)
T ss_pred             --hcchHHHHHHHHHHHHHHHcCCcchhHHHHHHHHhc
Confidence              113567888888888899999999999988887753

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=100.00  E-value=6.2e-31  Score=256.65  Aligned_cols=298  Identities=18%  Similarity=0.235  Sum_probs=202.4

Q ss_pred             CCcccccCCCCCCCcccCHHHH---HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~   77 (354)
                      ++|++||||++|+|++||++++   ..++.+++.++.+|++|+||||+||||+|+++++...+.                
T Consensus        16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~----------------   79 (725)
T PRK13341         16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH----------------   79 (725)
T ss_pred             CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCc----------------
Confidence            3799999999999999999988   478889999999999999999999999999999865211                


Q ss_pred             CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc
Q 018543           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (354)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~  157 (354)
                                      .+.++....+..   .+++.++........    .++..++||||+|.++...|++|++.+|+.
T Consensus        80 ----------------f~~lna~~~~i~---dir~~i~~a~~~l~~----~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g  136 (725)
T PRK13341         80 ----------------FSSLNAVLAGVK---DLRAEVDRAKERLER----HGKRTILFIDEVHRFNKAQQDALLPWVENG  136 (725)
T ss_pred             ----------------ceeehhhhhhhH---HHHHHHHHHHHHhhh----cCCceEEEEeChhhCCHHHHHHHHHHhcCc
Confidence                            112222211211   234444443222111    134579999999999999999999999862


Q ss_pred             cCceeEEEEecCC--CcccHHHhhhcceeeecCCCHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHcCCCHHHH
Q 018543          158 SASCRLILCCNSS--SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-------KEGLQLPSGFATRLAEKSNRSLRRA  228 (354)
Q Consensus       158 ~~~~~~Il~~~~~--~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~-------~~~~~i~~~~l~~i~~~s~gd~R~a  228 (354)
                        ...+|..++..  ..+.++++|||.++.|+|++.+++..++++++.       .+++.+++++++.|++.+.||+|++
T Consensus       137 --~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l  214 (725)
T PRK13341        137 --TITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL  214 (725)
T ss_pred             --eEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence              23344433322  368899999999999999999999999999887       4678999999999999999999999


Q ss_pred             HHHHHHHHhcCC--C-----CCCCC--C-C----CCCCH-HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHH
Q 018543          229 ILSFETCRVQQY--P-----FKDNQ--A-I----PAMDW-EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVV  293 (354)
Q Consensus       229 i~~L~~~~~~~~--~-----~~~~~--~-~----~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  293 (354)
                      ++.|+.++....  .     ++.+.  . +    ..-+. .+...+.+.++.++-...+.+.+..++-.++..|++|..|
T Consensus       215 ln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I  294 (725)
T PRK13341        215 LNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFI  294 (725)
T ss_pred             HHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHH
Confidence            999998764321  1     11000  0 0    00000 0011233333333323356778888999999999999999


Q ss_pred             HHHHHHHHHHh--CCHHHHHHHHHHH--HHHhhHhhCCCChhHhHHHHHH
Q 018543          294 LKRLLYELLKR--LDAEIKHEVCHWA--AYYEHKMRRGNKAIFHLEAFVA  339 (354)
Q Consensus       294 l~~l~~~~~~~--~~~~~~~~~~~~~--~~~~~~l~~~~~~~l~l~~~i~  339 (354)
                      ...+.......  +.+.....+...+  +.-...|-+|.....|.-.++|
T Consensus       295 ~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la  344 (725)
T PRK13341        295 FRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLA  344 (725)
T ss_pred             HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHH
Confidence            99888776652  3222333333333  3333344455555555554444

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.98  E-value=3e-30  Score=233.28  Aligned_cols=310  Identities=18%  Similarity=0.217  Sum_probs=208.4

Q ss_pred             CCCCccc-CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543           11 TLDQVIV-HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus        11 ~~~~~~g-~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      .++.++| |+.+++.|+..+.+|+++| +||+||+|+||+++|+.+++.++|++......        |+.|..|..+..
T Consensus         3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~--------cg~C~~c~~~~~   74 (329)
T PRK08058          3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP--------CGTCTNCKRIDS   74 (329)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC--------CCcCHHHHHHhc
Confidence            5788898 9999999999999999999 89999999999999999999999876322111        334443334444


Q ss_pred             cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEec
Q 018543           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN  168 (354)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~  168 (354)
                      ..+++...+.+.. .......++++++.+...+.     .++++|+||||+|.|+.+++|+|+++||+||+++.||++|+
T Consensus        75 ~~hpD~~~i~~~~-~~i~id~ir~l~~~~~~~~~-----~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~  148 (329)
T PRK08058         75 GNHPDVHLVAPDG-QSIKKDQIRYLKEEFSKSGV-----ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTE  148 (329)
T ss_pred             CCCCCEEEecccc-ccCCHHHHHHHHHHHhhCCc-----ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence            4455555554442 22223467777766654432     46789999999999999999999999999999999999999


Q ss_pred             CCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCC-C
Q 018543          169 SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ--YPFKD-N  245 (354)
Q Consensus       169 ~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~--~~~~~-~  245 (354)
                      ++.+++++|+|||++++|++++.+++..+|+.    +|  ++++....++.. .|++++|+.+++.-....  ..+.. -
T Consensus       149 ~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~-~g~~~~A~~l~~~~~~~~~~~~~~~~~  221 (329)
T PRK08058        149 NKHQILPTILSRCQVVEFRPLPPESLIQRLQE----EG--ISESLATLLAGL-TNSVEEALALSEDDWFAQARALVIKLY  221 (329)
T ss_pred             ChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHH-cCCHHHHHHHhcCchHHHHHHHHHHHH
Confidence            99999999999999999999999999888863    45  556666666666 478999998865322110  00000 0


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhc-cChh----HHHHHHHHHHHHHHcCC--ChHHHH---HHHHHHHHHhCCHHHHHHHHH
Q 018543          246 QAIPAMDWEEFVFEIASDIMQE-QSPK----RLFQVRGKLYELLLNCV--PPVVVL---KRLLYELLKRLDAEIKHEVCH  315 (354)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~-~~~~----~~~~~~~~~~~l~~~~~--~~~~il---~~l~~~~~~~~~~~~~~~~~~  315 (354)
                      ..+...+.. .+..+.+.+... ....    .+.-....+.|++....  +...+.   .+....+.+..+......+++
T Consensus       222 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~~~a~~~s~~~l~~~~~  300 (329)
T PRK08058        222 EALHEKDLQ-SFVFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQQLALSYSQQQIVAALE  300 (329)
T ss_pred             HHHHcCCHH-HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            000011111 111111111110 0001    11122233445442211  111111   123334445677778889999


Q ss_pred             HHHHHhhHhhCCCChhHhHHHHHHHHH
Q 018543          316 WAAYYEHKMRRGNKAIFHLEAFVAKFM  342 (354)
Q Consensus       316 ~~~~~~~~l~~~~~~~l~l~~~i~~~~  342 (354)
                      .+.+...++..+.+..+.+|.++.++.
T Consensus       301 ~~~~~~~~l~~n~n~~L~le~lll~~~  327 (329)
T PRK08058        301 LILEAKRRLNSNVNFQLVMEQLVLRLQ  327 (329)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence            999999999999999999999988753

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.98  E-value=1.1e-30  Score=234.32  Aligned_cols=303  Identities=17%  Similarity=0.194  Sum_probs=205.0

Q ss_pred             HHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543           23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (354)
Q Consensus        23 ~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (354)
                      ..+++++++|+.+| +||+||+|+||+++|+.+|+.++|........        |+.|+.|..+...++++...+.+.+
T Consensus        10 ~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~--------Cg~C~sC~~~~~g~HPD~~~i~~~~   81 (328)
T PRK05707         10 SLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGA--------CGSCKGCQLLRAGSHPDNFVLEPEE   81 (328)
T ss_pred             HHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCC--------CCCCHHHHHHhcCCCCCEEEEeccC
Confidence            44556677799999 99999999999999999999999976432111        4455544556666677777776654


Q ss_pred             CC-CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhh
Q 018543          102 AG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (354)
Q Consensus       102 ~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR  180 (354)
                      .+ ......+|++.+.+...+.     .++++|+|||++|.|+.+++|+|+|+||+|++++.||++|++++.+++||+||
T Consensus        82 ~~~~i~id~iR~l~~~~~~~~~-----~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR  156 (328)
T PRK05707         82 ADKTIKVDQVRELVSFVVQTAQ-----LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR  156 (328)
T ss_pred             CCCCCCHHHHHHHHHHHhhccc-----cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh
Confidence            32 2334578888877665443     46789999999999999999999999999999999999999999999999999


Q ss_pred             cceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCC-CCCCCCCCCCHHHHHH
Q 018543          181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-YPF-KDNQAIPAMDWEEFVF  258 (354)
Q Consensus       181 ~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~~~-~~~~~~~~~~~~~~~~  258 (354)
                      |+.++|++|+.+++..+|.....    ..+++....++..++|++.+|+.+++.-.... ..+ ..-..+....  ....
T Consensus       157 c~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~~~~~~~~r~~~~~~l~~~~~~~--~~~~  230 (328)
T PRK05707        157 CQQQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLHEQGVREQRARVLDGVKKLLKQQ--QSAS  230 (328)
T ss_pred             ceeeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHHCcchHHHHHHHHHHHHHHhcCc--ccHH
Confidence            99999999999999999985431    24567777889999999999988764211000 000 0000000000  0112


Q ss_pred             HHHHHHHhccChhHHHHHHHHHHHHHHc--CCChH-HH---HHHHHHHHHHhCCHHHHHHHHHHHHHHhhHhh--CCCCh
Q 018543          259 EIASDIMQEQSPKRLFQVRGKLYELLLN--CVPPV-VV---LKRLLYELLKRLDAEIKHEVCHWAAYYEHKMR--RGNKA  330 (354)
Q Consensus       259 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~-~i---l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~  330 (354)
                      .+++.+.+.+...-+.-....+.|++..  +.++. .+   .......+.+.++.......++.+.++..++.  .+.+.
T Consensus       231 ~~~~~~~k~~~~~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~a~~~~~~~L~~~~~~l~~~~~~l~~~~NvN~  310 (328)
T PRK05707        231 QLAESWLKVPLLLLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYLAQKSPQAKVLALQDWLLEQRQKVLGKANLNR  310 (328)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccCCCCH
Confidence            3333222211111122233345555432  21211 11   11233344456677777888999999998885  68889


Q ss_pred             hHhHHHHHHHHHHH
Q 018543          331 IFHLEAFVAKFMSI  344 (354)
Q Consensus       331 ~l~l~~~i~~~~~~  344 (354)
                      .+.+|.++.++...
T Consensus       311 ~L~le~lll~~~~~  324 (328)
T PRK05707        311 QLLLEALLVQWAGL  324 (328)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887554

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=99.98  E-value=2.8e-30  Score=229.79  Aligned_cols=303  Identities=16%  Similarity=0.127  Sum_probs=206.9

Q ss_pred             CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee
Q 018543           18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   96 (354)
                      +....+.|.+.+.+|+.+| +||+||+|+||+++|+.+|+.++|.......        .|+.|+.|..+...++++...
T Consensus         7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~--------~Cg~C~sC~~~~~g~HPD~~~   78 (325)
T PRK06871          7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ--------PCGQCHSCHLFQAGNHPDFHI   78 (325)
T ss_pred             hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC--------CCCCCHHHHHHhcCCCCCEEE
Confidence            5677889999999999999 9999999999999999999999997643211        144555555666667777777


Q ss_pred             eCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHH
Q 018543           97 LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA  176 (354)
Q Consensus        97 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~  176 (354)
                      +.+.+........+|++.+.+...+.     .+++||+|||++|.|+.+++|+|+|+||+||+++.||++|++++++++|
T Consensus        79 i~p~~~~~I~id~iR~l~~~~~~~~~-----~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpT  153 (325)
T PRK06871         79 LEPIDNKDIGVDQVREINEKVSQHAQ-----QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPT  153 (325)
T ss_pred             EccccCCCCCHHHHHHHHHHHhhccc-----cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchH
Confidence            76644333344578888777665543     4688999999999999999999999999999999999999999999999


Q ss_pred             HhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCC-C-CCCCCCCCCH
Q 018543          177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-YPF-K-DNQAIPAMDW  253 (354)
Q Consensus       177 l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-~~~-~-~~~~~~~~~~  253 (354)
                      |+|||+.+.|++++.+++..+|....     ..++..+..++..++|++..|+..++...... ..+ . ........+.
T Consensus       154 I~SRC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~~~r~~~~~~l~~~~~~~~~  228 (325)
T PRK06871        154 IYSRCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLLEQRKTFLRQFWLFYRRRSP  228 (325)
T ss_pred             HHhhceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChHHHHHHHHHHHHHHhccCCH
Confidence            99999999999999999999998643     22344567778899999999988765321100 000 0 0000000011


Q ss_pred             HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHc--CCChHHHH---HHHHHHHHHhCCHHHHHHHHHHHHHHhhHhhC--
Q 018543          254 EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLN--CVPPVVVL---KRLLYELLKRLDAEIKHEVCHWAAYYEHKMRR--  326 (354)
Q Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~il---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--  326 (354)
                          .+++..+.+......+.-....+.|++..  +.+...+.   ......+.++.+.....+.++.+.+...++..  
T Consensus       229 ----~~~~~~~~k~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~~~s~~~L~~~i~~i~~~r~~L~~~~  304 (325)
T PRK06871        229 ----LELLPLFDKELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQKVRSDLLQIN  304 (325)
T ss_pred             ----HHHHHHHhhccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHccc
Confidence                11222111111111123334455565532  21111111   12333445567777888999999999999964  


Q ss_pred             CCChhHhHHHHHHHHH
Q 018543          327 GNKAIFHLEAFVAKFM  342 (354)
Q Consensus       327 ~~~~~l~l~~~i~~~~  342 (354)
                      +-|..+.++..+.+..
T Consensus       305 ~iN~~L~l~~~l~~~~  320 (325)
T PRK06871        305 AVNQELILLDGLTRLV  320 (325)
T ss_pred             ccCHHHHHHHHHHHHH
Confidence            5556776666665543

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.97  E-value=3.1e-30  Score=234.48  Aligned_cols=217  Identities=20%  Similarity=0.299  Sum_probs=169.3

Q ss_pred             cCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc---cccccccCCCccc
Q 018543            7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE---NKTWKIDAGSRNI   82 (354)
Q Consensus         7 yrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~---~~~~~~~~~~~~~   82 (354)
                      .+|+++++++||+++++.|.+.+.+|+++| +||+||+|+||+++|+.+|+.++|.........   ..... .|+.|..
T Consensus        13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~   91 (365)
T PRK07471         13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPV   91 (365)
T ss_pred             CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChH
Confidence            699999999999999999999999999999 999999999999999999999999763211100   00000 0223333


Q ss_pred             cccccccccCceeeeCCC--CCC-----CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHh
Q 018543           83 DLELTTLSSANHVELSPS--DAG-----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME  155 (354)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~--~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le  155 (354)
                      |..+...++++...+.+.  +.+     ......+|++.+.+....     ..++++|+||||+|.|+.+++|+|++++|
T Consensus        92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~-----~~~~~kVviIDead~m~~~aanaLLK~LE  166 (365)
T PRK07471         92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTA-----AEGGWRVVIVDTADEMNANAANALLKVLE  166 (365)
T ss_pred             HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCc-----ccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence            334555566666666542  221     112234666665544332     25678999999999999999999999999


Q ss_pred             hccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543          156 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       156 ~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                      +++.++.||++|++++.+.++++|||+.+.|++++.+++..+|.+.    +...+++.+..++..++|++++|+.+++
T Consensus       167 epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~  240 (365)
T PRK07471        167 EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAG  240 (365)
T ss_pred             cCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999863    3334556668899999999999999886

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=99.97  E-value=2.2e-29  Score=223.78  Aligned_cols=194  Identities=20%  Similarity=0.275  Sum_probs=154.3

Q ss_pred             CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee
Q 018543           18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   96 (354)
                      +..+++.|...+++|++|| +||+||+|+||+++|+++|+.++|.....           ++.|+.|.-+...++++...
T Consensus         9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~-----------~~~c~~c~~~~~g~HPD~~~   77 (319)
T PRK08769          9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDP-----------AAAQRTRQLIAAGTHPDLQL   77 (319)
T ss_pred             HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCC-----------CCcchHHHHHhcCCCCCEEE
Confidence            6778899999999999999 99999999999999999999999975321           11222222334445566555


Q ss_pred             e--CCCCCCC-----cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC
Q 018543           97 L--SPSDAGF-----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (354)
Q Consensus        97 ~--~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~  169 (354)
                      +  .+++.+.     .....+|++.+.+...+.     .+++||+|||++|.|+.+++|+|+|+||+|++++.||++|++
T Consensus        78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~-----~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~  152 (319)
T PRK08769         78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQ-----YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQ  152 (319)
T ss_pred             EecCCCcccccccccccHHHHHHHHHHHhhCcc-----cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence            5  4443321     123457777766554433     467899999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543          170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       170 ~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                      +++++|||+|||+.+.|++|+.+++..+|..    .+  +++..+..++..++|++..|+..++
T Consensus       153 ~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~  210 (319)
T PRK08769        153 PARLPATIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLR  210 (319)
T ss_pred             hhhCchHHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence            9999999999999999999999999999974    23  4566677789999999999988764

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.97  E-value=6.7e-30  Score=211.02  Aligned_cols=190  Identities=24%  Similarity=0.371  Sum_probs=135.2

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHh-----cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~-----~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      ...+++||++|+|++||++++..++-+++     ++.++|++||||||+||||+|+.+|+++..+           +.  
T Consensus        13 ~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~-----------~~--   79 (233)
T PF05496_consen   13 PLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN-----------FK--   79 (233)
T ss_dssp             -HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-------------EE--
T ss_pred             hhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC-----------eE--
Confidence            45688999999999999999988876664     2457899999999999999999999986211           00  


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~  156 (354)
                                         ..+..  ....   ..++...+...        .+..|+||||+|+|++..|+.|+..||+
T Consensus        80 -------------------~~sg~--~i~k---~~dl~~il~~l--------~~~~ILFIDEIHRlnk~~qe~LlpamEd  127 (233)
T PF05496_consen   80 -------------------ITSGP--AIEK---AGDLAAILTNL--------KEGDILFIDEIHRLNKAQQEILLPAMED  127 (233)
T ss_dssp             -------------------EEECC--C--S---CHHHHHHHHT----------TT-EEEECTCCC--HHHHHHHHHHHHC
T ss_pred             -------------------eccch--hhhh---HHHHHHHHHhc--------CCCcEEEEechhhccHHHHHHHHHHhcc
Confidence                               11110  0111   12222222221        2347999999999999999999999997


Q ss_pred             cc------------------CceeEEEEecCCCcccHHHhhhccee-eecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543          157 YS------------------ASCRLILCCNSSSKVTEAIRSRCLNI-RINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (354)
Q Consensus       157 ~~------------------~~~~~Il~~~~~~~l~~~l~sR~~~i-~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i  217 (354)
                      ..                  +...+|.+|+....+.+++++|+.++ ++..++.+++.+++++.+...+++++++++.+|
T Consensus       128 ~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~I  207 (233)
T PF05496_consen  128 GKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEI  207 (233)
T ss_dssp             SEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHH
T ss_pred             CeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence            42                  23567888888889999999999875 799999999999999988889999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHH
Q 018543          218 AEKSNRSLRRAILSFETCR  236 (354)
Q Consensus       218 ~~~s~gd~R~ai~~L~~~~  236 (354)
                      +..|.|..|-|.++|..+.
T Consensus       208 a~rsrGtPRiAnrll~rvr  226 (233)
T PF05496_consen  208 ARRSRGTPRIANRLLRRVR  226 (233)
T ss_dssp             HHCTTTSHHHHHHHHHHHC
T ss_pred             HHhcCCChHHHHHHHHHHH
Confidence            9999999999999999774

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=99.97  E-value=8.6e-28  Score=215.33  Aligned_cols=301  Identities=17%  Similarity=0.140  Sum_probs=199.3

Q ss_pred             CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee
Q 018543           18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   96 (354)
                      +...++.+...  .++.+| +||+||+|+||+++|+.+|+.++|.........       |+.|..|..+...++++...
T Consensus         6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~-------Cg~C~~C~~~~~~~HPD~~~   76 (342)
T PRK06964          6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEP-------CGTCAACNWFAQGNHPDYRI   76 (342)
T ss_pred             cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCC-------CCCCHHHHHHHcCCCCCEEE
Confidence            45666677664  579999 999999999999999999999999764211111       34444444555566666665


Q ss_pred             eCCCC-------------------C--------CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHH
Q 018543           97 LSPSD-------------------A--------GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHS  149 (354)
Q Consensus        97 ~~~~~-------------------~--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~  149 (354)
                      +.+..                   .        .......+|++.+.+...+     ..+++||+|||++|.|+.+++|+
T Consensus        77 i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~-----~~~~~kV~iI~~ae~m~~~AaNa  151 (342)
T PRK06964         77 VRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGT-----HRGGARVVVLYPAEALNVAAANA  151 (342)
T ss_pred             EecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCC-----ccCCceEEEEechhhcCHHHHHH
Confidence            54431                   0        1122245777766544332     25788999999999999999999


Q ss_pred             HHHHHhhccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Q 018543          150 LRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI  229 (354)
Q Consensus       150 Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai  229 (354)
                      |+|+||+|++++.||++|++++++++||+|||+.++|++|+.+++..+|...    ++  ++  .+.++..++|++.+|+
T Consensus       152 LLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~--~~~~l~~~~Gsp~~Al  223 (342)
T PRK06964        152 LLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--AD--ADALLAEAGGAPLAAL  223 (342)
T ss_pred             HHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--Ch--HHHHHHHcCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999752    33  33  2345778899999998


Q ss_pred             HHHHHHHhcC-CCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChH-HHH---HHHHHHHHHh
Q 018543          230 LSFETCRVQQ-YPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPV-VVL---KRLLYELLKR  304 (354)
Q Consensus       230 ~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~il---~~l~~~~~~~  304 (354)
                      ..++.-.... ..+- + .+... ......++++.+.+.....-+.-....+.|++....... .+.   .+....+...
T Consensus       224 ~~~~~~~~~~~~~~~-~-~l~~~-~~~~~~~~~~~~~k~~~~~~l~~l~~~lrD~l~~~~~~~~~~~~d~~~~l~~~a~~  300 (342)
T PRK06964        224 ALASDENRPLRDWTL-G-QLAAG-AACDAFACAETLQKLPVPAVLGWLQRWLYDLLAQRLAGAPRYFPAQRAALARCAAA  300 (342)
T ss_pred             HHHCCChHHHHHHHH-H-HHhcc-CchhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHcCCCceecHhHHHHHHHHHHc
Confidence            8763210000 0000 0 00000 001223333333322212223334455666654221111 111   1233344556


Q ss_pred             CCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          305 LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                      ++.....+..+.+.++...+..+.+..+.+|.++.++-.
T Consensus       301 ~~~~~L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~~  339 (342)
T PRK06964        301 VDANALARFAKAVTRQRAVENHPLAARLVFEELFLGYRE  339 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHHH
Confidence            777778888899988888888999999999988887644

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=99.97  E-value=1.3e-27  Score=212.19  Aligned_cols=194  Identities=15%  Similarity=0.247  Sum_probs=157.4

Q ss_pred             CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee
Q 018543           18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   96 (354)
                      +....+.|...+++|+.+| +||+||.|+||+++|+.+|+.++|..... .        .|+.|+.|..+...++++...
T Consensus         8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-~--------~Cg~C~sC~~~~~g~HPD~~~   78 (319)
T PRK06090          8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-E--------ACGFCHSCELMQSGNHPDLHV   78 (319)
T ss_pred             HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-C--------CCCCCHHHHHHHcCCCCCEEE
Confidence            5677889999999999999 99999999999999999999999976421 1        144555445556667777777


Q ss_pred             eCCCCC-CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccH
Q 018543           97 LSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE  175 (354)
Q Consensus        97 ~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~  175 (354)
                      +.+... .......+|++.+.+...+.     .+++||+|||++|.|+.+++|+|+|++||||+++.||++|+++++++|
T Consensus        79 i~p~~~~~~I~vdqiR~l~~~~~~~~~-----~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLp  153 (319)
T PRK06090         79 IKPEKEGKSITVEQIRQCNRLAQESSQ-----LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLP  153 (319)
T ss_pred             EecCcCCCcCCHHHHHHHHHHHhhCcc-----cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChH
Confidence            766532 22334567777665544432     467899999999999999999999999999999999999999999999


Q ss_pred             HHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543          176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       176 ~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                      ||+|||+.+.|++|+.+++..+|..    .|+.    ....++..++|++.+|+..++
T Consensus       154 TI~SRCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~  203 (319)
T PRK06090        154 TIVSRCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMK  203 (319)
T ss_pred             HHHhcceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence            9999999999999999999999974    3443    235678899999999988764

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.97  E-value=1.8e-28  Score=223.52  Aligned_cols=309  Identities=26%  Similarity=0.357  Sum_probs=206.9

Q ss_pred             CCcccCHHHHHHHHHHHh-cCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccc
Q 018543           13 DQVIVHQDIAQNLKKLVT-EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~-~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (354)
                      +++++++++...+..++. .++.|| +||+||||+|||++|.++|+.++|........++        .+..|..+....
T Consensus         1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~--------~~~~~~~~~~~~   72 (325)
T COG0470           1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCG--------HCRSCKLIPAGN   72 (325)
T ss_pred             CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCccc--------chhhhhHHhhcC
Confidence            467888888888888887 688999 9999999999999999999999988754322211        112223555666


Q ss_pred             cCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCC
Q 018543           91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS  170 (354)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~  170 (354)
                      +++++++++++.+..+  .+.+.++.+...... .+..++++||||||+|.|+.+++++|++++|+|+.+++||++||++
T Consensus        73 ~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~-~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~  149 (325)
T COG0470          73 HPDFLELNPSDLRKID--IIVEQVRELAEFLSE-SPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP  149 (325)
T ss_pred             CCceEEecccccCCCc--chHHHHHHHHHHhcc-CCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence            7788999999887653  233333343333322 1124678999999999999999999999999999999999999999


Q ss_pred             CcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCCCC---
Q 018543          171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP-FKDNQ---  246 (354)
Q Consensus       171 ~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~-~~~~~---  246 (354)
                      .+++++|+|||+.++|+|++......+++           ++++..++..+.||+|.+++.++..+..... ...-.   
T Consensus       150 ~~il~tI~SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~~~~~~~~~~~~~  218 (325)
T COG0470         150 SKILPTIRSRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAALEIGEESIYEALL  218 (325)
T ss_pred             hhccchhhhcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHhcccHHHHHHHHH
Confidence            99999999999999999955544444433           6788999999999999999999988765221 00000   


Q ss_pred             -CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHH
Q 018543          247 -AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEL-LLNCVPPVVVLKRLLYELLKR----LDAEIKHEVCHWAAYY  320 (354)
Q Consensus       247 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~il~~l~~~~~~~----~~~~~~~~~~~~~~~~  320 (354)
                       ............+++.....     ....+....... ...+.........+.......    ...............+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (325)
T COG0470         219 LALPESLAQLAALELLKLAEN-----KFLEALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQA  293 (325)
T ss_pred             hhChhhcccccHHHHHHHHHh-----cchhHHHHHHHHHHHcCcchhHHHHHHHHHHhhchhhhhhhhHHHHHHHHHHHH
Confidence             00000000111122222110     111122222221 122223323222222222221    2334456688888999


Q ss_pred             hhHhhCCCChhHhHHHHHHHHHHHHHHH
Q 018543          321 EHKMRRGNKAIFHLEAFVAKFMSIYKGF  348 (354)
Q Consensus       321 ~~~l~~~~~~~l~l~~~i~~~~~~~~~~  348 (354)
                      ..++..+..+.+++..++...+.....+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (325)
T COG0470         294 RRRLLDGLLALIQLENLLAELLLLQLLL  321 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888876653

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.96  E-value=1.3e-28  Score=229.68  Aligned_cols=289  Identities=22%  Similarity=0.330  Sum_probs=208.3

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhc--------------------------------CCCCe--EEEeCCCCCcH
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE--------------------------------QDCPH--LLFYGPPGSGK   47 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~--------------------------------~~~~~--~ll~Gp~G~GK   47 (354)
                      ||++||+|+.|.|+.|.+.+.+.+..|++.                                ++++.  +||+||||.||
T Consensus       260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK  339 (877)
T KOG1969|consen  260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK  339 (877)
T ss_pred             eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence            799999999999999999988888888741                                23333  89999999999


Q ss_pred             HHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCC
Q 018543           48 KTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKG  127 (354)
Q Consensus        48 Ttla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  127 (354)
                      ||+|+.+|++.                                +..++++|+++.+...  .+++.+........+ +..
T Consensus       340 TTLAHViAkqa--------------------------------GYsVvEINASDeRt~~--~v~~kI~~avq~~s~-l~a  384 (877)
T KOG1969|consen  340 TTLAHVIAKQA--------------------------------GYSVVEINASDERTAP--MVKEKIENAVQNHSV-LDA  384 (877)
T ss_pred             hHHHHHHHHhc--------------------------------CceEEEecccccccHH--HHHHHHHHHHhhccc-ccc
Confidence            99999999964                                1235899999877643  466666555544443 223


Q ss_pred             CCCceEEEEeCCCcCCHHHHHHHHHHHhh--c----c---------------CceeEEEEecCCC-cccHHHhhhcceee
Q 018543          128 KRGFKVLVLNEVDKLSREAQHSLRRTMEK--Y----S---------------ASCRLILCCNSSS-KVTEAIRSRCLNIR  185 (354)
Q Consensus       128 ~~~~~viiiDE~d~l~~~~~~~Ll~~le~--~----~---------------~~~~~Il~~~~~~-~l~~~l~sR~~~i~  185 (354)
                      .+++.++||||+|+-.+.+.+.++..++.  .    +               -..++|+|||+.. .-+.+|+--|.++.
T Consensus       385 dsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~  464 (877)
T KOG1969|consen  385 DSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIA  464 (877)
T ss_pred             CCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEE
Confidence            46889999999999999999999999962  1    1               1245999999986 34566777789999


Q ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCC--------CCCCCCHHHHH
Q 018543          186 INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQ--------AIPAMDWEEFV  257 (354)
Q Consensus       186 ~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~~~~~--------~~~~~~~~~~~  257 (354)
                      |.+|+...+.+.|+.||.+||+..+..++..+++.+.+|+|.+||.||.++...+..+...        .....+-...+
T Consensus       465 f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~~~~k~~~~sl  544 (877)
T KOG1969|consen  465 FVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKNVGAKSNSDSL  544 (877)
T ss_pred             ecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhhhhcccccccch
Confidence            9999999999999999999999999999999999999999999999999998766432211        11223334456


Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHHHHHcC---CChHHHHHHHHHHHHH-hCCHHH---HHHHHHHHHHHhhHhh
Q 018543          258 FEIASDIMQEQSPKRLFQVRGKLYELLLNC---VPPVVVLKRLLYELLK-RLDAEI---KHEVCHWAAYYEHKMR  325 (354)
Q Consensus       258 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~il~~l~~~~~~-~~~~~~---~~~~~~~~~~~~~~l~  325 (354)
                      |.++..++.-........+.+.+|++....   -....++..++..+.+ .+.+..   -....+|+.+++.-+.
T Consensus       545 f~~w~ei~ql~k~~~~r~~~~~l~~l~~~~~l~~~servlqg~f~~~~~~~~~D~~i~~~~~~s~WL~F~D~l~~  619 (877)
T KOG1969|consen  545 FSWWKEIFQLRKKDRHRSIDEQLYGLLNQVELHGNSERVLQGCFSIFLRLKYSDLGIGKPANASDWLFFHDLLYQ  619 (877)
T ss_pred             HHHHHHHHHHhhcccccchHHHhhhhhhhhhccCchHHHHhhhhccccccccccccccchhhhhhHHHhhhHHHH
Confidence            667666664333333344555666665421   1234566666665554 332221   2346667766665444

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=99.95  E-value=9.8e-28  Score=194.77  Aligned_cols=160  Identities=30%  Similarity=0.471  Sum_probs=119.1

Q ss_pred             cCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543           17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (354)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   95 (354)
                      ||+.+++.|...++++++|| +||+||+|+||+++|+.+|+.++|......         .|..|..|..+....+++..
T Consensus         1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~---------~c~~c~~c~~~~~~~~~d~~   71 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED---------PCGECRSCRRIEEGNHPDFI   71 (162)
T ss_dssp             S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT-----------SSSHHHHHHHTT-CTTEE
T ss_pred             CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC---------CCCCCHHHHHHHhccCcceE
Confidence            89999999999999999999 899999999999999999999999875532         13344433455556677777


Q ss_pred             eeCCCCCC-CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCccc
Q 018543           96 ELSPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT  174 (354)
Q Consensus        96 ~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~  174 (354)
                      .+.+.... ......++++...+....     ..++++|+||||+|.|+.+++|+|+++||+|+.++.|||+|+++++++
T Consensus        72 ~~~~~~~~~~i~i~~ir~i~~~~~~~~-----~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il  146 (162)
T PF13177_consen   72 IIKPDKKKKSIKIDQIREIIEFLSLSP-----SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKIL  146 (162)
T ss_dssp             EEETTTSSSSBSHHHHHHHHHHCTSS------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-
T ss_pred             EEecccccchhhHHHHHHHHHHHHHHH-----hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHCh
Confidence            77666542 223346776665543332     246789999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcceeeecCCC
Q 018543          175 EAIRSRCLNIRINSPT  190 (354)
Q Consensus       175 ~~l~sR~~~i~~~~~~  190 (354)
                      +||+|||+.++|++++
T Consensus       147 ~TI~SRc~~i~~~~ls  162 (162)
T PF13177_consen  147 PTIRSRCQVIRFRPLS  162 (162)
T ss_dssp             HHHHTTSEEEEE----
T ss_pred             HHHHhhceEEecCCCC
Confidence            9999999999999874

...

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=99.95  E-value=8.6e-26  Score=197.42  Aligned_cols=193  Identities=19%  Similarity=0.256  Sum_probs=151.0

Q ss_pred             cCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543           17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (354)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   95 (354)
                      .|+.+++.|+..+++++++| +||+||  +||+++|+.+|+.++|........        |+.|..|..+...++++..
T Consensus         6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~--------Cg~C~~C~~i~~~~HPD~~   75 (290)
T PRK07276          6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLP--------CGHCRSCRLIEQGEFSDVT   75 (290)
T ss_pred             HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCC--------CCCCHHHHHHhcCCCCCee
Confidence            47889999999999999999 999996  689999999999999976432111        3444444455556667766


Q ss_pred             eeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccH
Q 018543           96 ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE  175 (354)
Q Consensus        96 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~  175 (354)
                      .+.+.+. ......+|++.+.+...+.     .++++|+|||++|.|+.+++|+|+|++|+|++++.||++|+++++++|
T Consensus        76 ~i~p~~~-~I~idqIR~l~~~~~~~p~-----~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLp  149 (290)
T PRK07276         76 VIEPQGQ-VIKTDTIRELVKNFSQSGY-----EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLP  149 (290)
T ss_pred             eecCCCC-cCCHHHHHHHHHHHhhCcc-----cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCch
Confidence            6666532 2334578888887766432     567899999999999999999999999999999999999999999999


Q ss_pred             HHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543          176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       176 ~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                      ||+|||+.++|++ +.+++.++|.    ++|+  +.+....++.. .|++.+|+.+++
T Consensus       150 TI~SRcq~i~f~~-~~~~~~~~L~----~~g~--~~~~a~~la~~-~~s~~~A~~l~~  199 (290)
T PRK07276        150 TIKSRTQIFHFPK-NEAYLIQLLE----QKGL--LKTQAELLAKL-AQSTSEAEKLAQ  199 (290)
T ss_pred             HHHHcceeeeCCC-cHHHHHHHHH----HcCC--ChHHHHHHHHH-CCCHHHHHHHhC
Confidence            9999999999976 7777777775    4564  34545555555 468999998863

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.95  E-value=4.5e-27  Score=196.90  Aligned_cols=186  Identities=23%  Similarity=0.313  Sum_probs=142.6

Q ss_pred             HHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543           23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (354)
Q Consensus        23 ~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (354)
                      +.|++.+++++.+| +||+||+|+|||++++.+++.+.|........        |..|..|..+.....++...+.+..
T Consensus         2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~--------c~~~~~c~~~~~~~~~d~~~~~~~~   73 (188)
T TIGR00678         2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEP--------CGECPSCRLIEAGNHPDLHRLEPEG   73 (188)
T ss_pred             hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCC--------CCCCHHHHHHHcCCCCcEEEecccc
Confidence            46788889999998 99999999999999999999998863221111        1222212222222333333333322


Q ss_pred             CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhc
Q 018543          102 AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (354)
Q Consensus       102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~  181 (354)
                       +......++++++.+...+ .    .++++|+||||+|.++.++++.|++.||++++++.+|++++++.++.++++|||
T Consensus        74 -~~~~~~~i~~i~~~~~~~~-~----~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~  147 (188)
T TIGR00678        74 -QSIKVDQVRELVEFLSRTP-Q----ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRC  147 (188)
T ss_pred             -CcCCHHHHHHHHHHHccCc-c----cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhc
Confidence             1122245676676554433 2    467899999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 018543          182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA  228 (354)
Q Consensus       182 ~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~a  228 (354)
                      .+++|.+++.+++..||.+.    |  +++++++.+++.++||+|+|
T Consensus       148 ~~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~  188 (188)
T TIGR00678       148 QVLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA  188 (188)
T ss_pred             EEeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence            99999999999999999865    4  78999999999999999975

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=99.95  E-value=3.6e-25  Score=192.71  Aligned_cols=269  Identities=15%  Similarity=0.163  Sum_probs=184.8

Q ss_pred             HHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeC
Q 018543           20 DIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (354)
Q Consensus        20 ~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (354)
                      ..++.|...+++|+.+| +||+||+|+||+++|+.+|+.++|.....   .|             ..+....+++...+.
T Consensus         4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c-------------~~~~~~~HPD~~~i~   67 (290)
T PRK05917          4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPE---AA-------------YKISQKIHPDIHEFS   67 (290)
T ss_pred             HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HH-------------HHHhcCCCCCEEEEe
Confidence            45788999999999999 99999999999999999999999864221   11             123344456665565


Q ss_pred             CCCCC-CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHH
Q 018543           99 PSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI  177 (354)
Q Consensus        99 ~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l  177 (354)
                      +...+ ......+|++.+.+...+.     .+++||+|||++|.|+.+++|+|+|+||+||+++.||++|+++++++|||
T Consensus        68 p~~~~~~I~idqiR~l~~~~~~~p~-----e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI  142 (290)
T PRK05917         68 PQGKGRLHSIETPRAIKKQIWIHPY-----ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTI  142 (290)
T ss_pred             cCCCCCcCcHHHHHHHHHHHhhCcc-----CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHH
Confidence            55432 2233467887777665432     57889999999999999999999999999999999999999999999999


Q ss_pred             hhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH--HHHHHHHHHHhcCCCCCCCCCCCCCCHHH
Q 018543          178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR--RAILSFETCRVQQYPFKDNQAIPAMDWEE  255 (354)
Q Consensus       178 ~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R--~ai~~L~~~~~~~~~~~~~~~~~~~~~~~  255 (354)
                      +|||+.++|+++.               ...++++.+..++..++|+++  .+...++...   ..   ....    ..+
T Consensus       143 ~SRcq~~~~~~~~---------------~~~i~~~~~~~l~~~~~g~~~~~~~~~~l~~~~---~~---~~~~----~re  197 (290)
T PRK05917        143 RSRSLSIHIPMEE---------------KTLVSKEDIAYLIGYAQGKESVTEVGQIVKGSA---DT---DKQV----LRD  197 (290)
T ss_pred             HhcceEEEccchh---------------ccCCCHHHHHHHHHHhCCChhHHHHHHHHhcch---HH---HHHH----HHH
Confidence            9999999998861               224678899999999999985  3333332210   00   0000    001


Q ss_pred             HHHHHHHHHHhccChhHHHHHHHHHHHHHH--cCCChH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhHhhCCCChhH
Q 018543          256 FVFEIASDIMQEQSPKRLFQVRGKLYELLL--NCVPPV-VVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIF  332 (354)
Q Consensus       256 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~-~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  332 (354)
                      .+..+            +.-....+.|++.  .+.+.. .+..+....+.+ .+......+++.+.+...++..+.+..+
T Consensus       198 ~~~~~------------L~~ll~~~RD~l~~~~~~~~~~l~~~d~~~~l~~-~~~~~l~~~i~~i~~a~~~l~~N~N~~l  264 (290)
T PRK05917        198 KTKAM------------LEVLLQLFRDRFLLALKVPASALAYPDLLKEILT-LPVLPLEKVLSIIERAVQALDNSSSAPS  264 (290)
T ss_pred             HHHHH------------HHHHHHHHHHHHHHHcCCchhhhccHHHHHHHHh-cccccHHHHHHHHHHHHHHHHhcCCHHH
Confidence            11111            1112223334332  222222 122222222322 2222255788999999999999999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 018543          333 HLEAFVAKFMSIYKG  347 (354)
Q Consensus       333 ~l~~~i~~~~~~~~~  347 (354)
                      .++.++.++...+++
T Consensus       265 ~le~l~l~l~~~~~~  279 (290)
T PRK05917        265 CLEWVALQLWSLKNR  279 (290)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887764

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=99.94  E-value=4.1e-24  Score=191.68  Aligned_cols=292  Identities=15%  Similarity=0.157  Sum_probs=190.9

Q ss_pred             CHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee
Q 018543           18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   96 (354)
                      +...++.+...  .++++| +||+||+|+|||++|+.+|+.++|.....-..       .|+.|+.|..+...++++...
T Consensus         6 ~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~-------~Cg~C~~C~~~~~~~HpD~~~   76 (325)
T PRK08699          6 HQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHK-------PCGECMSCHLFGQGSHPDFYE   76 (325)
T ss_pred             cHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCC-------CCCcCHHHHHHhcCCCCCEEE
Confidence            45566666655  579999 99999999999999999999999975421110       144555555666777788888


Q ss_pred             eCCCCC----C----CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEec
Q 018543           97 LSPSDA----G----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN  168 (354)
Q Consensus        97 ~~~~~~----~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~  168 (354)
                      +.+...    +    ......+|++.+.+...+.     .++++|++||+++.|++.++++|+++||+++.++.||++|+
T Consensus        77 ~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~-----~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth  151 (325)
T PRK08699         77 ITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSV-----RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSH  151 (325)
T ss_pred             EecccccccccccCCCcCHHHHHHHHHHHhhCcc-----cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            876421    1    1233468887766554332     46789999999999999999999999999988899999999


Q ss_pred             CCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH---------HHHHHHhcC
Q 018543          169 SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL---------SFETCRVQQ  239 (354)
Q Consensus       169 ~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~---------~L~~~~~~~  239 (354)
                      +++.++++++|||+.+.|++|+.+++..+|..    .++.  +.. ..+ ..++|....+..         .++.+.   
T Consensus       152 ~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~----~~~~--~~~-~~l-~~~~g~p~~~~~~~~~~~r~~~~~~l~---  220 (325)
T PRK08699        152 AADKVLPTIKSRCRKMVLPAPSHEEALAYLRE----RGVA--EPE-ERL-AFHSGAPLFDEEPELRALRIKLLDILA---  220 (325)
T ss_pred             ChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh----cCCC--cHH-HHH-HHhCCChhhhcCchHHHHHHHHHHHHH---
Confidence            99999999999999999999999999999974    2443  221 122 345665533221         111111   


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhcc--ChhHHHHHHHHHHHHHHcCC-ChHHH---HHHHHHHHHHhCCHHHHHHH
Q 018543          240 YPFKDNQAIPAMDWEEFVFEIASDIMQEQ--SPKRLFQVRGKLYELLLNCV-PPVVV---LKRLLYELLKRLDAEIKHEV  313 (354)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-~~~~i---l~~l~~~~~~~~~~~~~~~~  313 (354)
                                ..+ ...+..+++.+.+..  ...-+.-....+.|++.-.. ....+   ..+....+.+.++.......
T Consensus       221 ----------~~~-~~~~l~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~~~~~~d~~~~l~~~a~~~~~~~L~~~  289 (325)
T PRK08699        221 ----------EPR-LLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQTASGFRPRNVFAA  289 (325)
T ss_pred             ----------ccC-hhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCCcccCHhHHHHHHHHHHhcCHHHHHHH
Confidence                      000 011223333332210  01112223334455543211 11111   11222334456677777888


Q ss_pred             HHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543          314 CHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       314 ~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~  345 (354)
                      .+.+.++...+..+.+..+.+|.++.++...+
T Consensus       290 ~~~l~~~~~~l~~n~n~~L~le~lll~~~~~~  321 (325)
T PRK08699        290 EDMLKQLAPYGFHTLNVKMQIEHLLINYLELK  321 (325)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence            88888888888899999999999888775543

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.93  E-value=3e-24  Score=180.76  Aligned_cols=187  Identities=24%  Similarity=0.347  Sum_probs=149.9

Q ss_pred             cccCCCCCCCcccCHHHHHHHHHHHhc-----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543            5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
                      ...||++|+|++||++++++++-+++.     ..+.|+||+||||.||||+|+.+|+++...           +.     
T Consensus        18 ~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn-----------~k-----   81 (332)
T COG2255          18 RSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN-----------LK-----   81 (332)
T ss_pred             cccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC-----------eE-----
Confidence            357999999999999999999988763     456789999999999999999999998210           00     


Q ss_pred             ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-
Q 018543           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-  158 (354)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-  158 (354)
                              . +++.++         .   ...++..-+...        .+.+|+||||+|++++...+.|...||++. 
T Consensus        82 --------~-tsGp~l---------e---K~gDlaaiLt~L--------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~l  132 (332)
T COG2255          82 --------I-TSGPAL---------E---KPGDLAAILTNL--------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRL  132 (332)
T ss_pred             --------e-cccccc---------c---ChhhHHHHHhcC--------CcCCeEEEehhhhcChhHHHHhhhhhhheeE
Confidence                    0 001011         1   112233323322        345899999999999999999999999753 


Q ss_pred             -----------------CceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 018543          159 -----------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK  220 (354)
Q Consensus       159 -----------------~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~  220 (354)
                                       +...+|.+|+..-.+..++++|+- +.++.-++.+++..++.+-+...++.++++++..|+.+
T Consensus       133 DI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r  212 (332)
T COG2255         133 DIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARR  212 (332)
T ss_pred             EEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh
Confidence                             345688888888899999999985 57888899999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHH
Q 018543          221 SNRSLRRAILSFETCR  236 (354)
Q Consensus       221 s~gd~R~ai~~L~~~~  236 (354)
                      |.|-+|-|..+|....
T Consensus       213 SRGTPRIAnRLLrRVR  228 (332)
T COG2255         213 SRGTPRIANRLLRRVR  228 (332)
T ss_pred             ccCCcHHHHHHHHHHH
Confidence            9999999999998654

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.93  E-value=9.5e-25  Score=198.35  Aligned_cols=190  Identities=24%  Similarity=0.321  Sum_probs=148.5

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhc-----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      +|-.+|||.+|++++|+++.++.+..++..     ...+|++|+||||+|||++++++|+++...-           .  
T Consensus        14 ~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~-----------~--   80 (328)
T PRK00080         14 EIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI-----------R--   80 (328)
T ss_pred             hhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe-----------E--
Confidence            477899999999999999999988877752     3345699999999999999999999762110           0  


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~  156 (354)
                                         .......  .....+..++.   ..        +...+++|||+|.++...++.|+..|++
T Consensus        81 -------------------~~~~~~~--~~~~~l~~~l~---~l--------~~~~vl~IDEi~~l~~~~~e~l~~~~e~  128 (328)
T PRK00080         81 -------------------ITSGPAL--EKPGDLAAILT---NL--------EEGDVLFIDEIHRLSPVVEEILYPAMED  128 (328)
T ss_pred             -------------------EEecccc--cChHHHHHHHH---hc--------ccCCEEEEecHhhcchHHHHHHHHHHHh
Confidence                               0000000  00011222221   11        2347999999999999888888888876


Q ss_pred             cc------------------CceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543          157 YS------------------ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (354)
Q Consensus       157 ~~------------------~~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i  217 (354)
                      ..                  +...+|++++....+.++++||| ..++|++++.+++.+++++.+...++.++++++..|
T Consensus       129 ~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~i  208 (328)
T PRK00080        129 FRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEI  208 (328)
T ss_pred             cceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence            42                  23567888888889999999998 569999999999999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHH
Q 018543          218 AEKSNRSLRRAILSFETCR  236 (354)
Q Consensus       218 ~~~s~gd~R~ai~~L~~~~  236 (354)
                      ++.++|++|.+.+.|+.+.
T Consensus       209 a~~~~G~pR~a~~~l~~~~  227 (328)
T PRK00080        209 ARRSRGTPRIANRLLRRVR  227 (328)
T ss_pred             HHHcCCCchHHHHHHHHHH
Confidence            9999999999999998654

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=99.93  E-value=1.3e-22  Score=179.08  Aligned_cols=289  Identities=13%  Similarity=0.138  Sum_probs=179.8

Q ss_pred             HHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC-ceee
Q 018543           19 QDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA-NHVE   96 (354)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~   96 (354)
                      ..+++.|++.+++|+++| +||+|++|+||+++++.+++.++|...+.+....                    ++ +...
T Consensus         2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~--------------------~p~n~~~   61 (299)
T PRK07132          2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE--------------------LPANIIL   61 (299)
T ss_pred             chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC--------------------CCcceEE
Confidence            356788999999999999 9999999999999999999999886432110000                    11 1122


Q ss_pred             eCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHH
Q 018543           97 LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA  176 (354)
Q Consensus        97 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~  176 (354)
                      +.+.+ .......++++++.+...+ .   ..++++|+|||+++.++..++|+|+++||+||+++.||++|+++++++++
T Consensus        62 ~d~~g-~~i~vd~Ir~l~~~~~~~~-~---~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~T  136 (299)
T PRK07132         62 FDIFD-KDLSKSEFLSAINKLYFSS-F---VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPT  136 (299)
T ss_pred             eccCC-CcCCHHHHHHHHHHhccCC-c---ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHH
Confidence            22111 1122234555554432221 1   23588999999999999999999999999999999999999999999999


Q ss_pred             HhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-C-CCCCCCCCCCHH
Q 018543          177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP-F-KDNQAIPAMDWE  254 (354)
Q Consensus       177 l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~-~-~~~~~~~~~~~~  254 (354)
                      |+|||++++|++++.+++..+|...    +  ++++....++..++ ++.+|+..++.-...... + ..-..... +. 
T Consensus       137 I~SRc~~~~f~~l~~~~l~~~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~~~~~~~~~~~~~~l~~~~~-~~-  207 (299)
T PRK07132        137 IVSRCQVFNVKEPDQQKILAKLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYINKESENLLKKFEEALNKSLK-EK-  207 (299)
T ss_pred             HHhCeEEEECCCCCHHHHHHHHHHc----C--CChhHHHHHHHHcC-CHHHHHHHHhcCCHHHHHHHHHHHHHhhh-hH-
Confidence            9999999999999999999999742    3  56777777777776 599999876422110000 0 00000000 00 


Q ss_pred             HHHHHHHHHHHhccChhH-HHHHHHHHHHHHHc--CCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhHhhCCCCh
Q 018543          255 EFVFEIASDIMQEQSPKR-LFQVRGKLYELLLN--CVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAAYYEHKMRRGNKA  330 (354)
Q Consensus       255 ~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~--~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~  330 (354)
                      ..+....+.......... +.-..-+..+++..  +.++..+... ...+.+ .++.   ..+++.+.++..++..+.|.
T Consensus       208 ~~l~~~~~~~~~ke~~~~ll~~l~~~~rd~l~~~~~~~~~~i~~~-~~~i~~~~~s~---~~li~~i~~~~~~L~~N~N~  283 (299)
T PRK07132        208 YELILFLNKKLTKENALFLLKLLKFFFKSIFANKKKKNPKNIKVA-FSKKKKFKIEF---FELITIIDEFLNSLETNENF  283 (299)
T ss_pred             HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCChHhHhhH-HHHHHHHhcCH---HHHHHHHHHHHHHHHHhcCH
Confidence            011111111111000000 11111223333332  2233222222 111111 1222   22488889999999999999


Q ss_pred             hHhHHHHHHHHHHHH
Q 018543          331 IFHLEAFVAKFMSIY  345 (354)
Q Consensus       331 ~l~l~~~i~~~~~~~  345 (354)
                      .+++|.++.++.-.|
T Consensus       284 ~l~~e~lll~l~e~~  298 (299)
T PRK07132        284 NLQKQAFLVKIYEIY  298 (299)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999887654

>TIGR00602 rad24 checkpoint protein rad24

Probab=99.92  E-value=3.3e-24  Score=205.68  Aligned_cols=222  Identities=20%  Similarity=0.255  Sum_probs=142.2

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-----EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-----LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-----~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      +|+|||||++++|++||++.++.++.|+.....++     ++|+||||+||||+++++++.+.. ..       .+|.  
T Consensus        73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~-~~-------~Ew~--  142 (637)
T TIGR00602        73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI-QV-------QEWS--  142 (637)
T ss_pred             chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh-HH-------HHHh--
Confidence            79999999999999999999999999998644332     999999999999999999997622 11       1110  


Q ss_pred             CCCccccccccccccCc-eeeeCCCCCC--CcchhHHHHHHHHHHhcCCCC-CCCCCCceEEEEeCCCcCCHH---HHHH
Q 018543           77 AGSRNIDLELTTLSSAN-HVELSPSDAG--FQDRYVVQEVIKEMAKNRPID-TKGKRGFKVLVLNEVDKLSRE---AQHS  149 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~-~i~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~viiiDE~d~l~~~---~~~~  149 (354)
                      ++.     .+......+ .+........  ......+++++.......... ....++.+||+|||++.+...   ++..
T Consensus       143 npv-----~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~  217 (637)
T TIGR00602       143 NPT-----LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHE  217 (637)
T ss_pred             hhh-----hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHH
Confidence            000     000000000 0000000000  111123445444433211110 011346789999999766432   2333


Q ss_pred             HHH-HHhhccCceeEEEEecCCCc---------------ccHHHhh--hcceeeecCCCHHHHHHHHHHHHHHcCCC---
Q 018543          150 LRR-TMEKYSASCRLILCCNSSSK---------------VTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQ---  208 (354)
Q Consensus       150 Ll~-~le~~~~~~~~Il~~~~~~~---------------l~~~l~s--R~~~i~~~~~~~~~~~~~L~~~~~~~~~~---  208 (354)
                      +++ ...+ ...+++|+++++...               +.+++++  |+.+|.|+|++..++.+.|.+++..++..   
T Consensus       218 lLr~~~~e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~  296 (637)
T TIGR00602       218 ILRWKYVS-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGE  296 (637)
T ss_pred             HHHHHhhc-CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence            333 2212 245677887774211               2378888  56779999999999999999999887532   


Q ss_pred             ---C-CHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543          209 ---L-PSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       209 ---i-~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~  239 (354)
                         + ++++++.|+..++||+|.||+.||.+|..+
T Consensus       297 ~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~  331 (637)
T TIGR00602       297 KIKVPKKTSVELLCQGCSGDIRSAINSLQFSSSKS  331 (637)
T ss_pred             ccccCCHHHHHHHHHhCCChHHHHHHHHHHHHhcC
Confidence               2 468999999999999999999999987764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.92  E-value=3.6e-24  Score=204.75  Aligned_cols=217  Identities=21%  Similarity=0.309  Sum_probs=149.6

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCC-------Cccccccccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKTWK   74 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-------~~~~~~~~~~~~   74 (354)
                      +|.|||||.+|++++|+++.++.++..+......|++|+||||||||++|+++.+......       ...+.+++....
T Consensus        54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~  133 (531)
T TIGR02902        54 PLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTAR  133 (531)
T ss_pred             hHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccccc
Confidence            6999999999999999999999999888777777899999999999999999987532111       111122211000


Q ss_pred             ccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhc--C-C-CCCCCCCCceEEEEeCCCcCCHHHHHHH
Q 018543           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN--R-P-IDTKGKRGFKVLVLNEVDKLSREAQHSL  150 (354)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~--~-~-~~~~~~~~~~viiiDE~d~l~~~~~~~L  150 (354)
                               ..-..... ..+       +... ..+......+...  . + ...-......+++|||++.|++..|+.|
T Consensus       134 ---------~~~~~~~~-~li-------~~~~-~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~L  195 (531)
T TIGR02902       134 ---------FDERGIAD-PLI-------GSVH-DPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKL  195 (531)
T ss_pred             ---------CCccccch-hhc-------CCcc-cchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHH
Confidence                     00000000 000       0000 0000000000000  0 0 0000123457999999999999999999


Q ss_pred             HHHHhhc----------------------------cCceeEEEEe-cCCCcccHHHhhhcceeeecCCCHHHHHHHHHHH
Q 018543          151 RRTMEKY----------------------------SASCRLILCC-NSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFI  201 (354)
Q Consensus       151 l~~le~~----------------------------~~~~~~Il~~-~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~  201 (354)
                      ++.||+.                            +.++++|++| ++++.++++++|||..+.|++++.+++..++++.
T Consensus       196 L~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~  275 (531)
T TIGR02902       196 LKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNA  275 (531)
T ss_pred             HHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHH
Confidence            9999762                            1234566654 4677899999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 018543          202 AKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (354)
Q Consensus       202 ~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~  237 (354)
                      +++.++.+++++++.+..++. |.|.++++++.++.
T Consensus       276 a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~  310 (531)
T TIGR02902       276 AEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAG  310 (531)
T ss_pred             HHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHH
Confidence            999999999999998888765 99999999998764

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=99.92  E-value=9.3e-24  Score=179.77  Aligned_cols=179  Identities=16%  Similarity=0.206  Sum_probs=138.0

Q ss_pred             CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHH
Q 018543           33 DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ  111 (354)
Q Consensus        33 ~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~  111 (354)
                      ..|| +||+||+|+||..+|..+|+.++|.....        .  |+.|+.|..+....+++...+.+.... .....+|
T Consensus         5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~--------~--Cg~C~sC~~i~~~~HPDl~~i~p~~~~-I~id~ir   73 (261)
T PRK05818          5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANG--------F--CKTCESCLKILNGKYNDFYLIFDQKNP-IKKEDAL   73 (261)
T ss_pred             CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCC--------C--CCCCHHHHHHhcCCCCCEEEecCCccc-CCHHHHH
Confidence            4567 99999999999999999999999976321        1  444544455666667776666555422 2334677


Q ss_pred             HHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcceeeecCC--
Q 018543          112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP--  189 (354)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~--  189 (354)
                      ++.+.+.... .   ..+++||+||+++|.|+.+++|+|++++|+||+++.||++|++++++++||+|||+.+.|+++  
T Consensus        74 ~l~~~l~~~s-~---e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~  149 (261)
T PRK05818         74 SIINKLNRPS-V---ESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEK  149 (261)
T ss_pred             HHHHHHccCc-h---hcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhh
Confidence            7776665322 1   135689999999999999999999999999999999999999999999999999999999988  


Q ss_pred             --------CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543          190 --------TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC  235 (354)
Q Consensus       190 --------~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~  235 (354)
                              ++.++.+.|...   .+  +++    .++..++|++.+|+.+++.+
T Consensus       150 ~~~~~~~~~~~~i~~~L~~~---~~--~d~----~i~~~a~g~~~~a~~l~~~l  194 (261)
T PRK05818        150 KVPFKVESNDRYFQYILLSF---YS--VDE----QLQAYNNGSFSKLKNIIETL  194 (261)
T ss_pred             hcccccccChHHHHHHHHHc---cC--ccH----HHHHHcCCCHHHHHHHHHHH
Confidence                    555666655531   12  344    67778999999999999854

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.91  E-value=4.9e-23  Score=185.85  Aligned_cols=182  Identities=22%  Similarity=0.303  Sum_probs=141.6

Q ss_pred             CCCCCcccCHHHHHHHHHHHh-----cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~-----~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
                      ++|++++|++++++.|..++.     .+..+|++|+||||+|||++++++|+++...-           .          
T Consensus         1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~-----------~----------   59 (305)
T TIGR00635         1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL-----------K----------   59 (305)
T ss_pred             CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE-----------E----------
Confidence            579999999999999999887     34566799999999999999999999762210           0          


Q ss_pred             cccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc------
Q 018543           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------  158 (354)
Q Consensus        85 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------  158 (354)
                                 ......  ...   ..++...+...        +...+++|||++.+++..++.|+..|++..      
T Consensus        60 -----------~~~~~~--~~~---~~~l~~~l~~~--------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~  115 (305)
T TIGR00635        60 -----------ITSGPA--LEK---PGDLAAILTNL--------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIG  115 (305)
T ss_pred             -----------Eeccch--hcC---chhHHHHHHhc--------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeec
Confidence                       000000  000   11122222211        234799999999999999999998886432      


Q ss_pred             ------------CceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q 018543          159 ------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSL  225 (354)
Q Consensus       159 ------------~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~  225 (354)
                                  +...+|.+++.+..+.++++|||. .++|++++.+++.+++++.+...++.+++++++.|++.++|++
T Consensus       116 ~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p  195 (305)
T TIGR00635       116 KGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP  195 (305)
T ss_pred             cCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence                        235678888888899999999994 6899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 018543          226 RRAILSFETCR  236 (354)
Q Consensus       226 R~ai~~L~~~~  236 (354)
                      |.+.++++.+.
T Consensus       196 R~~~~ll~~~~  206 (305)
T TIGR00635       196 RIANRLLRRVR  206 (305)
T ss_pred             chHHHHHHHHH
Confidence            99999998764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=99.89  E-value=2.8e-22  Score=189.21  Aligned_cols=221  Identities=23%  Similarity=0.396  Sum_probs=135.1

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhc---CCCC--eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE---QDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~---~~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      +|+|||+|++.+|++.|++.++.++.|++.   +..+  .++|+||+||||||+++++|+++.. .       -.+|.  
T Consensus         8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~-~-------v~Ew~--   77 (519)
T PF03215_consen    8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGF-E-------VQEWI--   77 (519)
T ss_pred             ccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCC-e-------eEEec--
Confidence            799999999999999999999999999975   2222  2899999999999999999998722 1       11221  


Q ss_pred             CCCccccccccccccCceeeeCC--CCCC--CcchhHHHHHHHHHHhcCCCCC---CCCCCceEEEEeCCCcCCHHHHHH
Q 018543           77 AGSRNIDLELTTLSSANHVELSP--SDAG--FQDRYVVQEVIKEMAKNRPIDT---KGKRGFKVLVLNEVDKLSREAQHS  149 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~--~~~~--~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~viiiDE~d~l~~~~~~~  149 (354)
                      +|........      ...++..  ....  ......+.++.-..........   ....+.+||+|+|...........
T Consensus        78 np~~~~~~~~------~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~  151 (519)
T PF03215_consen   78 NPVSFRESDN------QEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSR  151 (519)
T ss_pred             CCCCcccccc------ccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHH
Confidence            1111000000      0000000  0000  0000011111100011111100   122467999999976543332255


Q ss_pred             HHHHHhhc--cCce-eEEEEecCCC-----------------cccHHHhhh--cceeeecCCCHHHHHHHHHHHHHHc--
Q 018543          150 LRRTMEKY--SASC-RLILCCNSSS-----------------KVTEAIRSR--CLNIRINSPTEEQIVKVLEFIAKKE--  205 (354)
Q Consensus       150 Ll~~le~~--~~~~-~~Il~~~~~~-----------------~l~~~l~sR--~~~i~~~~~~~~~~~~~L~~~~~~~--  205 (354)
                      |...|.++  ...+ ++|++.++.+                 -+.+.+...  +..|.|+|.+..-+.+.|.+++..|  
T Consensus       152 f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~  231 (519)
T PF03215_consen  152 FREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEAR  231 (519)
T ss_pred             HHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhh
Confidence            55555543  1223 5555444210                 133556554  5689999999999999999999988  


Q ss_pred             ---CC-CCC--HHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 018543          206 ---GL-QLP--SGFATRLAEKSNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       206 ---~~-~i~--~~~l~~i~~~s~gd~R~ai~~L~~~~~~  238 (354)
                         +. ..+  .+.++.|++.+.||+|.||+.||.+|..
T Consensus       232 ~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~  270 (519)
T PF03215_consen  232 SSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCLK  270 (519)
T ss_pred             hhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhcC
Confidence               32 222  4469999999999999999999999983

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.89  E-value=6.7e-22  Score=173.89  Aligned_cols=191  Identities=24%  Similarity=0.287  Sum_probs=133.0

Q ss_pred             CCCCcccCHHHHHHHHHHHh----------c-----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543           11 TLDQVIVHQDIAQNLKKLVT----------E-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~----------~-----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~   75 (354)
                      .+++++|.+.+++.++..+.          .     +..+|++|+|||||||||+|+++|+.+......           
T Consensus         4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~-----------   72 (261)
T TIGR02881         4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVL-----------   72 (261)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcc-----------
Confidence            36789999999877765431          1     234569999999999999999999976432110           


Q ss_pred             cCCCccccccccccccCceeeeCCCCCC----CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--------
Q 018543           76 DAGSRNIDLELTTLSSANHVELSPSDAG----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------  143 (354)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------  143 (354)
                                    ....+++...++.-    ......+++.++.   .         ...|+||||+|.|.        
T Consensus        73 --------------~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~---a---------~~~VL~IDE~~~L~~~~~~~~~  126 (261)
T TIGR02881        73 --------------SKGHLIEVERADLVGEYIGHTAQKTREVIKK---A---------LGGVLFIDEAYSLARGGEKDFG  126 (261)
T ss_pred             --------------cCCceEEecHHHhhhhhccchHHHHHHHHHh---c---------cCCEEEEechhhhccCCccchH
Confidence                          00011111111100    0001123333322   1         12699999999875        


Q ss_pred             HHHHHHHHHHHhhccCceeEEEEecCCC-----cccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543          144 REAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (354)
Q Consensus       144 ~~~~~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i  217 (354)
                      .+.++.|++.|++......+|+++...+     .+.|+++||+ ..++|++++.+++..++++.+...+..++++++..+
T Consensus       127 ~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l  206 (261)
T TIGR02881       127 KEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKL  206 (261)
T ss_pred             HHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHH
Confidence            4577889999998776666666654332     4678999999 569999999999999999999998999999999888


Q ss_pred             HHH----------cCCCHHHHHHHHHHHHhc
Q 018543          218 AEK----------SNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       218 ~~~----------s~gd~R~ai~~L~~~~~~  238 (354)
                      ++.          +.||.|.+.|+++.+...
T Consensus       207 ~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~  237 (261)
T TIGR02881       207 REHLYKVDQLSSREFSNARYVRNIIEKAIRR  237 (261)
T ss_pred             HHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence            553          369999999999986543

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.88  E-value=3.4e-21  Score=166.40  Aligned_cols=182  Identities=13%  Similarity=0.276  Sum_probs=134.9

Q ss_pred             CCCCcc--cCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543           11 TLDQVI--VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus        11 ~~~~~~--g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      +|++++  ++..++..+..+......++++|+||+|+||||+++++++++...+..                        
T Consensus        20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~------------------------   75 (235)
T PRK08084         20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRA------------------------   75 (235)
T ss_pred             CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCe------------------------
Confidence            788887  477788889888876666679999999999999999999876432110                        


Q ss_pred             cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhhcc--CceeEE
Q 018543           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYS--ASCRLI  164 (354)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~--~~~~~I  164 (354)
                           ...+.......    ...++.+.+.           +..+++|||++.+.  +..+..|+.++....  .+..+|
T Consensus        76 -----v~y~~~~~~~~----~~~~~~~~~~-----------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li  135 (235)
T PRK08084         76 -----VGYVPLDKRAW----FVPEVLEGME-----------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLL  135 (235)
T ss_pred             -----EEEEEHHHHhh----hhHHHHHHhh-----------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEE
Confidence                 01111100000    1122222221           23689999999885  455666767665432  234688


Q ss_pred             EEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543          165 LCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (354)
Q Consensus       165 l~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~  236 (354)
                      ++++.+.    .+.+.++|||   .++.+++|+.+++..+|++.+...|+.++++++++|++.+.||+|.+++.|+.+-
T Consensus       136 ~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~  214 (235)
T PRK08084        136 ITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD  214 (235)
T ss_pred             EeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            8888664    3679999999   7999999999999999999888889999999999999999999999999998753

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.87  E-value=3e-21  Score=175.84  Aligned_cols=219  Identities=21%  Similarity=0.331  Sum_probs=139.2

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHh-----cCCCCe--EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~-----~~~~~~--~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~   74 (354)
                      +|+|||+|++.+++..|+..+..++.|++     ....++  +||+||+||||||+++.+++++ +..       -.+|.
T Consensus        71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-g~~-------~~Ew~  142 (634)
T KOG1970|consen   71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-GYQ-------LIEWS  142 (634)
T ss_pred             hhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-Cce-------eeeec
Confidence            79999999999999999999999999998     555665  8999999999999999999976 222       11122


Q ss_pred             ccCCCccccccccccccCceeeeCCCCCCCcchhHH---HHHHHHHHhcCCC---CCCCCCCceEEEEeCCCcC-CHHHH
Q 018543           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVV---QEVIKEMAKNRPI---DTKGKRGFKVLVLNEVDKL-SREAQ  147 (354)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i---~~~~~~~~~~~~~---~~~~~~~~~viiiDE~d~l-~~~~~  147 (354)
                        +|....        ...+..-..+..+......+   ..++.........   .....+.+++|+|||.... ..+..
T Consensus       143 --Npi~~~--------~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~  212 (634)
T KOG1970|consen  143 --NPINLK--------EPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDS  212 (634)
T ss_pred             --CCcccc--------ccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhH
Confidence              111100        00000000000010010111   2222222111111   1123456789999997443 23233


Q ss_pred             HHHHHHHhhc---cCceeEEEEecCCC--------cccHHHhh--hcceeeecCCCHHHHHHHHHHHHHHcCCCCC----
Q 018543          148 HSLRRTMEKY---SASCRLILCCNSSS--------KVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLP----  210 (354)
Q Consensus       148 ~~Ll~~le~~---~~~~~~Il~~~~~~--------~l~~~l~s--R~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~----  210 (354)
                      ..+...|..+   .....++++|+...        .....+.-  |...|.|+|+.+.-+++.|+++|..++...+    
T Consensus       213 ~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~  292 (634)
T KOG1970|consen  213 ETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKV  292 (634)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence            4444444333   33344555555443        23344444  4568999999999999999999999887666    


Q ss_pred             --HHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 018543          211 --SGFATRLAEKSNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       211 --~~~l~~i~~~s~gd~R~ai~~L~~~~~~  238 (354)
                        ...++.++..++||+|.||+.||..+..
T Consensus       293 ~~~~~v~~i~~~s~GDIRsAInsLQlsssk  322 (634)
T KOG1970|consen  293 PDTAEVELICQGSGGDIRSAINSLQLSSSK  322 (634)
T ss_pred             chhHHHHHHHHhcCccHHHHHhHhhhhccc
Confidence              6778999999999999999999988644

>PRK06893 DNA replication initiation factor; Validated

Probab=99.86  E-value=1.9e-20  Score=161.20  Aligned_cols=185  Identities=17%  Similarity=0.278  Sum_probs=127.9

Q ss_pred             CCCCCCCcccCHHH--HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccc
Q 018543            8 RPKTLDQVIVHQDI--AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (354)
Q Consensus         8 rP~~~~~~~g~~~~--~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
                      +|.+|+++++++..  ...+.........|.++||||||+|||++++++++++.......                    
T Consensus        11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~--------------------   70 (229)
T PRK06893         11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTA--------------------   70 (229)
T ss_pred             CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCe--------------------
Confidence            45699999976543  22333333333445589999999999999999999874332111                    


Q ss_pred             ccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhhccC-cee
Q 018543           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA-SCR  162 (354)
Q Consensus        86 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~~-~~~  162 (354)
                               ..+.......    ...+.++.+           .+.++++|||++.+.  ...+..|+.+++.... +..
T Consensus        71 ---------~y~~~~~~~~----~~~~~~~~~-----------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~  126 (229)
T PRK06893         71 ---------IYIPLSKSQY----FSPAVLENL-----------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKT  126 (229)
T ss_pred             ---------EEeeHHHhhh----hhHHHHhhc-----------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCc
Confidence                     1111100000    011112111           234799999999874  4456678887765432 333


Q ss_pred             -EEEEecCCC----cccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 018543          163 -LILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (354)
Q Consensus       163 -~Il~~~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~  234 (354)
                       +|++++...    ...+.++||+.   ++++++|+.++...+|++.+..+++.++++++++|++.++||+|.+++.|+.
T Consensus       127 illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~  206 (229)
T PRK06893        127 LLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDL  206 (229)
T ss_pred             EEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence             445555543    24589999986   8999999999999999999999999999999999999999999999999986


Q ss_pred             HH
Q 018543          235 CR  236 (354)
Q Consensus       235 ~~  236 (354)
                      +.
T Consensus       207 l~  208 (229)
T PRK06893        207 LD  208 (229)
T ss_pred             HH
Confidence            64

>PRK08727 hypothetical protein; Validated

Probab=99.86  E-value=5.3e-20  Score=158.75  Aligned_cols=183  Identities=21%  Similarity=0.326  Sum_probs=130.2

Q ss_pred             CCCCCcccC-HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543           10 KTLDQVIVH-QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus        10 ~~~~~~~g~-~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      .+|+++++. ......+...........++|+||+|+|||+++++++.++...+..                        
T Consensus        16 ~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~------------------------   71 (233)
T PRK08727         16 QRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRS------------------------   71 (233)
T ss_pred             CChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCc------------------------
Confidence            389998764 3444444444433322349999999999999999999876432211                        


Q ss_pred             cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhhc-cCceeEEE
Q 018543           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKY-SASCRLIL  165 (354)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~~-~~~~~~Il  165 (354)
                           ...+...+..    ..+.+.++.+           .+..+|+|||++.+.  +..+..++.+++.. ..+..+|+
T Consensus        72 -----~~y~~~~~~~----~~~~~~~~~l-----------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~  131 (233)
T PRK08727         72 -----SAYLPLQAAA----GRLRDALEAL-----------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLY  131 (233)
T ss_pred             -----EEEEeHHHhh----hhHHHHHHHH-----------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEE
Confidence                 0111111100    0111222221           233799999999885  45667788887653 23456888


Q ss_pred             EecCCC----cccHHHhhh---cceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543          166 CCNSSS----KVTEAIRSR---CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (354)
Q Consensus       166 ~~~~~~----~l~~~l~sR---~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~  236 (354)
                      +++.+.    .+.+.++||   |.++.|++|+.+++..+|++++..+++.++++++++|++.++||+|.+++.|+.+.
T Consensus       132 ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~  209 (233)
T PRK08727        132 TARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLD  209 (233)
T ss_pred             ECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            888654    357999999   78999999999999999999999899999999999999999999999999988664

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.85  E-value=1e-19  Score=176.80  Aligned_cols=215  Identities=22%  Similarity=0.306  Sum_probs=143.0

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCC-------Cccccccccccccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKTWKID   76 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-------~~~~~~~~~~~~~~   76 (354)
                      .+.|||.+|++++|+...++.+...+.....++++|+|||||||||+|+.+.+......       ...+.++|..+.  
T Consensus       145 ~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~--  222 (615)
T TIGR02903       145 QSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR--  222 (615)
T ss_pred             hhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc--
Confidence            46799999999999999998888888777777899999999999999999987542211       111222221110  


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcC---CC-CCCCCCCceEEEEeCCCcCCHHHHHHHHH
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR---PI-DTKGKRGFKVLVLNEVDKLSREAQHSLRR  152 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~---~~-~~~~~~~~~viiiDE~d~l~~~~~~~Ll~  152 (354)
                               +.    ...+.  ..-.+...........+.+....   +. .........++||||++.|+...|+.|++
T Consensus       223 ---------~d----~~~i~--~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~  287 (615)
T TIGR02903       223 ---------WD----PREVT--NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLK  287 (615)
T ss_pred             ---------CC----HHHHh--HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHH
Confidence                     00    00000  00000000000000001111100   00 00011233699999999999999999999


Q ss_pred             HHhhcc--------------------------CceeEEEE---ecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHH
Q 018543          153 TMEKYS--------------------------ASCRLILC---CNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK  203 (354)
Q Consensus       153 ~le~~~--------------------------~~~~~Il~---~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~  203 (354)
                      .|++..                          ....++++   ++++..+.++++|||..+.|+|++.+++..++.+.+.
T Consensus       288 ~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~  367 (615)
T TIGR02903       288 VLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE  367 (615)
T ss_pred             HHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence            997631                          11224443   3345678999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543          204 KEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (354)
Q Consensus       204 ~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~  236 (354)
                      +.++.+++++++.|++.+. +.|++++.|+.++
T Consensus       368 ~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~  399 (615)
T TIGR02903       368 KINVHLAAGVEELIARYTI-EGRKAVNILADVY  399 (615)
T ss_pred             HcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence            8888899999999988764 7899999998664

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.84  E-value=1.4e-19  Score=156.15  Aligned_cols=182  Identities=18%  Similarity=0.287  Sum_probs=134.4

Q ss_pred             cCCCCCCCcc--cCHHHHHHHHHHHhcC-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543            7 YRPKTLDQVI--VHQDIAQNLKKLVTEQ-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus         7 yrP~~~~~~~--g~~~~~~~l~~~l~~~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      -+|.+|++++  ++..+...++.+.... ...+++|+||+|+|||+++++++++....+...+.                
T Consensus        12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~----------------   75 (227)
T PRK08903         12 PPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARY----------------   75 (227)
T ss_pred             CChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE----------------
Confidence            3567899988  3577788888887643 33459999999999999999999976433322111                


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce--
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC--  161 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~--  161 (354)
                                   +....        ..+   .+..        ....++++|||+|.++...+..|+.+++....+.  
T Consensus        76 -------------i~~~~--------~~~---~~~~--------~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~  123 (227)
T PRK08903         76 -------------LDAAS--------PLL---AFDF--------DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQG  123 (227)
T ss_pred             -------------EehHH--------hHH---HHhh--------cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCc
Confidence                         11100        000   0100        1234799999999999989999999997654333  


Q ss_pred             eEEEEecCCC---cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543          162 RLILCCNSSS---KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC  235 (354)
Q Consensus       162 ~~Il~~~~~~---~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~  235 (354)
                      .+|++++...   .+.+.+.||+   ..++++||+.++...++.+.+.+.++.+++++++.+++.+.||+|.+.+.|+.+
T Consensus       124 ~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l  203 (227)
T PRK08903        124 ALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDAL  203 (227)
T ss_pred             EEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            3455444332   4568899996   689999999999999999999899999999999999999999999999998875


Q ss_pred             H
Q 018543          236 R  236 (354)
Q Consensus       236 ~  236 (354)
                      .
T Consensus       204 ~  204 (227)
T PRK08903        204 D  204 (227)
T ss_pred             H
Confidence            4

>CHL00181 cbbX CbbX; Provisional

Probab=99.84  E-value=1.6e-19  Score=159.83  Aligned_cols=187  Identities=18%  Similarity=0.273  Sum_probs=129.3

Q ss_pred             CcccCHHHHHHHHHHHh----------c-----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543           14 QVIVHQDIAQNLKKLVT----------E-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~----------~-----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~   78 (354)
                      +++|.+++++.+..++.          .     +...|++|+||||||||++|+++++.+...+..              
T Consensus        24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~--------------   89 (287)
T CHL00181         24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI--------------   89 (287)
T ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC--------------
Confidence            68999999887776542          1     123459999999999999999999976432110              


Q ss_pred             CccccccccccccCceeeeCCCC-----CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---------CH
Q 018543           79 SRNIDLELTTLSSANHVELSPSD-----AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SR  144 (354)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~  144 (354)
                                 .....++++..+     .+... ...+++++.            ....|+||||++.+         ..
T Consensus        90 -----------~~~~~~~v~~~~l~~~~~g~~~-~~~~~~l~~------------a~ggVLfIDE~~~l~~~~~~~~~~~  145 (287)
T CHL00181         90 -----------KKGHLLTVTRDDLVGQYIGHTA-PKTKEVLKK------------AMGGVLFIDEAYYLYKPDNERDYGS  145 (287)
T ss_pred             -----------CCCceEEecHHHHHHHHhccch-HHHHHHHHH------------ccCCEEEEEccchhccCCCccchHH
Confidence                       000112222111     00000 112222221            12269999999986         46


Q ss_pred             HHHHHHHHHHhhccCceeEEEEecCCC-----cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018543          145 EAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (354)
Q Consensus       145 ~~~~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~  218 (354)
                      +.++.|++.|++...++++|++++...     ...|+++|||. .|.|++++.+++..++...+.+.+..+++++...+.
T Consensus       146 e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~  225 (287)
T CHL00181        146 EAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALL  225 (287)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHH
Confidence            788999999998777777666654322     33589999986 799999999999999999999999999988877666


Q ss_pred             HH--------cCCCHHHHHHHHHHHHhc
Q 018543          219 EK--------SNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       219 ~~--------s~gd~R~ai~~L~~~~~~  238 (354)
                      ..        .-||.|.+.+.++.+...
T Consensus       226 ~~i~~~~~~~~~GNaR~vrn~ve~~~~~  253 (287)
T CHL00181        226 DYIKKRMEQPLFANARSVRNALDRARMR  253 (287)
T ss_pred             HHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence            63        348899999999877644

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.83  E-value=3.2e-19  Score=154.05  Aligned_cols=185  Identities=19%  Similarity=0.323  Sum_probs=134.1

Q ss_pred             CCCCCCCccc--CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccc
Q 018543            8 RPKTLDQVIV--HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (354)
Q Consensus         8 rP~~~~~~~g--~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
                      .|.+|+++++  +..+.+.++.++.....++++|+||+|||||++++.+++.........+.+++.              
T Consensus        10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~--------------   75 (226)
T TIGR03420        10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA--------------   75 (226)
T ss_pred             CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH--------------
Confidence            3567899883  677889999998766666799999999999999999998764332111111111              


Q ss_pred             ccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH--HHHHHHHHHhhcc-Ccee
Q 018543           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--AQHSLRRTMEKYS-ASCR  162 (354)
Q Consensus        86 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--~~~~Ll~~le~~~-~~~~  162 (354)
                                     ....    ...+.+..           ..+..+++|||+|.++..  .++.|...++... .+..
T Consensus        76 ---------------~~~~----~~~~~~~~-----------~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~  125 (226)
T TIGR03420        76 ---------------ELAQ----ADPEVLEG-----------LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGR  125 (226)
T ss_pred             ---------------HHHH----hHHHHHhh-----------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCe
Confidence                           0000    00111111           122369999999999763  4788888876532 2346


Q ss_pred             EEEEecCCC-c--cc-HHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543          163 LILCCNSSS-K--VT-EAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC  235 (354)
Q Consensus       163 ~Il~~~~~~-~--l~-~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~  235 (354)
                      +|++++... .  .. +.+.+|+   ..+.+++++.++...++++.+.+.++.+++++++.|++.+.||+|.+.+.++.+
T Consensus       126 iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~  205 (226)
T TIGR03420       126 LLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDAL  205 (226)
T ss_pred             EEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            777776543 2  33 7889887   479999999999999999988888999999999999999999999999998754


Q ss_pred             H
Q 018543          236 R  236 (354)
Q Consensus       236 ~  236 (354)
                      -
T Consensus       206 ~  206 (226)
T TIGR03420       206 D  206 (226)
T ss_pred             H
Confidence            3

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.82  E-value=1.6e-19  Score=150.35  Aligned_cols=179  Identities=25%  Similarity=0.376  Sum_probs=126.9

Q ss_pred             cCCCCCCCcccCHHHHHHHHHHH---hc------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543            7 YRPKTLDQVIVHQDIAQNLKKLV---TE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (354)
Q Consensus         7 yrP~~~~~~~g~~~~~~~l~~~l---~~------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~   77 (354)
                      .+..+|+|++||+++++..+-.+   ++      ..+.++|||||||||||.+|+++|++...+-               
T Consensus       115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~---------------  179 (368)
T COG1223         115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL---------------  179 (368)
T ss_pred             hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce---------------
Confidence            44568999999999986555433   32      2344699999999999999999998752111               


Q ss_pred             CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------------HH
Q 018543           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------RE  145 (354)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------------~~  145 (354)
                               -.+...   ++.....| .....++++........         +.|+||||.|.+.            .+
T Consensus       180 ---------l~vkat---~liGehVG-dgar~Ihely~rA~~~a---------PcivFiDE~DAiaLdRryQelRGDVsE  237 (368)
T COG1223         180 ---------LLVKAT---ELIGEHVG-DGARRIHELYERARKAA---------PCIVFIDELDAIALDRRYQELRGDVSE  237 (368)
T ss_pred             ---------EEechH---HHHHHHhh-hHHHHHHHHHHHHHhcC---------CeEEEehhhhhhhhhhhHHHhcccHHH
Confidence                     000000   01111111 11224666665555443         4899999998763            24


Q ss_pred             HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Q 018543          146 AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN  222 (354)
Q Consensus       146 ~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~  222 (354)
                      ..|+|+.-|+..  ..++.+|..||+++-+.++++||+. .|+|.-|++++...+|+..+++.-++++.. ++.+++.+.
T Consensus       238 iVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~  316 (368)
T COG1223         238 IVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTK  316 (368)
T ss_pred             HHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhC
Confidence            678888888543  3568899999999999999999996 699999999999999999998877776654 788888776


Q ss_pred             C
Q 018543          223 R  223 (354)
Q Consensus       223 g  223 (354)
                      |
T Consensus       317 g  317 (368)
T COG1223         317 G  317 (368)
T ss_pred             C
Confidence            6

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=99.82  E-value=2.3e-18  Score=143.46  Aligned_cols=180  Identities=11%  Similarity=0.121  Sum_probs=135.9

Q ss_pred             HHHHHHHhcCCCCe-EEEeCCCC-CcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543           23 QNLKKLVTEQDCPH-LLFYGPPG-SGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (354)
Q Consensus        23 ~~l~~~l~~~~~~~-~ll~Gp~G-~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (354)
                      ..|.+.++.+++.| +||.|..+ +||..++..++..+.|...                       ....+++...+.++
T Consensus         3 ~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i-----------------------~~~~HPD~~~I~pe   59 (263)
T PRK06581          3 ERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSI-----------------------PLENNPDYHFIARE   59 (263)
T ss_pred             HHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCc-----------------------ccCCCCCEEEEecc
Confidence            46788899999999 99999998 9999999999987766421                       11123334444443


Q ss_pred             CC-----CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccH
Q 018543          101 DA-----GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE  175 (354)
Q Consensus       101 ~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~  175 (354)
                      ..     .......+|++.+.+...+.     .+++||++|+++|.|+.+++|+|++++|+||+++.||++|+++.++++
T Consensus        60 ~~~~~~~~~I~IdqIReL~~~l~~~p~-----~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLp  134 (263)
T PRK06581         60 TSATSNAKNISIEQIRKLQDFLSKTSA-----ISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIIS  134 (263)
T ss_pred             ccccccCCcccHHHHHHHHHHHhhCcc-----cCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCch
Confidence            21     22334568887776655443     578899999999999999999999999999999999999999999999


Q ss_pred             HHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543          176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       176 ~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                      +|+|||+.++|+.|......++....+.-   ..+...++.|.+...-|....+...|
T Consensus       135 TIrSRCq~i~~~~p~~~~~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~~~  189 (263)
T PRK06581        135 TIRSRCFKINVRSSILHAYNELYSQFIQP---IADNKTLDFINRFTTKDRELWLDFID  189 (263)
T ss_pred             hHhhceEEEeCCCCCHHHHHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHHHHHH
Confidence            99999999999999998877777654322   22345577777776656555444444

>PRK06620 hypothetical protein; Validated

Probab=99.81  E-value=1.7e-18  Score=146.83  Aligned_cols=167  Identities=18%  Similarity=0.203  Sum_probs=118.2

Q ss_pred             CCCCccc---CHHHHHHHHHHHhc-CC-C--CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543           11 TLDQVIV---HQDIAQNLKKLVTE-QD-C--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        11 ~~~~~~g---~~~~~~~l~~~l~~-~~-~--~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      +|++++.   +..+...++.|.+. +. .  +.++||||||+||||+++++++....           .           
T Consensus        14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----------~-----------   71 (214)
T PRK06620         14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-----------Y-----------   71 (214)
T ss_pred             CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----------E-----------
Confidence            5677653   56678888888763 22 2  34999999999999999998764300           0           


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-Ccee
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-ASCR  162 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-~~~~  162 (354)
                                   +... ...     ..    .+.          ....+++|||+|.+..   ..|..+++... .+..
T Consensus        72 -------------~~~~-~~~-----~~----~~~----------~~~d~lliDdi~~~~~---~~lf~l~N~~~e~g~~  115 (214)
T PRK06620         72 -------------IIKD-IFF-----NE----EIL----------EKYNAFIIEDIENWQE---PALLHIFNIINEKQKY  115 (214)
T ss_pred             -------------Ecch-hhh-----ch----hHH----------hcCCEEEEeccccchH---HHHHHHHHHHHhcCCE
Confidence                         0000 000     00    010          1236899999997743   24444443221 2234


Q ss_pred             EEEEecCCC---cccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543          163 LILCCNSSS---KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (354)
Q Consensus       163 ~Il~~~~~~---~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~  236 (354)
                      ++++++.+.   .+ +.++||+.   ++.+++|+.+++..++++.+...++.++++++++|++.+.||+|.+++.|+.+.
T Consensus       116 ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~  194 (214)
T PRK06620        116 LLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENIN  194 (214)
T ss_pred             EEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            555555443   35 89999987   899999999999999999999889999999999999999999999999998764

>PRK05907 hypothetical protein; Provisional

Probab=99.81  E-value=6.2e-17  Score=144.23  Aligned_cols=270  Identities=14%  Similarity=0.196  Sum_probs=202.3

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  102 (354)
                      ..+...+++|+ |.++++|..-   ....+.+...+..++.  ..+++.                               
T Consensus         8 ~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~--~~fdg~-------------------------------   50 (311)
T PRK05907          8 KDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK--SEFDGQ-------------------------------   50 (311)
T ss_pred             HHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc--ceecCC-------------------------------
Confidence            44555677888 8899999987   4556666555533321  111111                               


Q ss_pred             CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC---cccHHHhh
Q 018543          103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS---KVTEAIRS  179 (354)
Q Consensus       103 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---~l~~~l~s  179 (354)
                       .   ..+.+++..+.+. |+    .+++++|++.+++.++....+.|.+++++|++.+.+|+.+...+   ++...+..
T Consensus        51 -~---~~~~~ii~~aetl-Pf----FaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~k  121 (311)
T PRK05907         51 -G---LLQQELLSWTEHF-GL----FASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLSS  121 (311)
T ss_pred             -C---CCHHHHHHHHhcC-Cc----ccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHhh
Confidence             1   1255666655444 43    47789999988887776677899999999988766663333222   12333432


Q ss_pred             hccee----eecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc---CCCCCCCC--CCC
Q 018543          180 RCLNI----RINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ---QYPFKDNQ--AIP  249 (354)
Q Consensus       180 R~~~i----~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~---~~~~~~~~--~~~  249 (354)
                       ...+    .|+++...++..|+.+++++.|..+++++++.+++.+ +||+..+.+.++.++..   +..++.++  .++
T Consensus       122 -~~~v~~~~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv  200 (311)
T PRK05907        122 -ALCLSLFGEWFADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFV  200 (311)
T ss_pred             -cceeccccccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHh
Confidence             4444    8999999999999999999999999999999999999 69999999999998776   23566555  456


Q ss_pred             CCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHH--------------h----CCHHHH
Q 018543          250 AMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLN-CVPPVVVLKRLLYELLK--------------R----LDAEIK  310 (354)
Q Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~il~~l~~~~~~--------------~----~~~~~~  310 (354)
                      ....+..+|++++++..    ++..++.+.+++|+.+ |.+|..|+..+.++++=              .    ++.+.+
T Consensus       201 ~~s~e~nIF~L~dai~~----~~~~~Al~il~~Ll~~~ge~p~~ILall~rQfl~~~k~l~~~g~~~~~p~~vafs~~~L  276 (311)
T PRK05907        201 VKKEAASLWKLRDALLR----RDRVEGHSLLRSLLSDMGEDPLGIIAFLRSQCLYGLRSIEEQSKERKHRIFVAYGKERL  276 (311)
T ss_pred             cCcccccHHHHHHHHHc----cCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECHHHH
Confidence            67788999999999998    7888999999999999 99999998887776521              1    344567


Q ss_pred             HHHHHHHHHHhhHhhCCC-ChhHhHHHHHHHHHH
Q 018543          311 HEVCHWAAYYEHKMRRGN-KAIFHLEAFVAKFMS  343 (354)
Q Consensus       311 ~~~~~~~~~~~~~l~~~~-~~~l~l~~~i~~~~~  343 (354)
                      .+.+..+.+.|..+++|. ++.+.+|.|+.+++.
T Consensus       277 ~~~~~~l~~~D~~iKtg~~d~~~~lElli~~~~~  310 (311)
T PRK05907        277 LQALNLLFYAESLIKNNVQDPILAVETLVIRMTN  310 (311)
T ss_pred             HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence            889999999999999876 458889999998763

>PRK05642 DNA replication initiation factor; Validated

Probab=99.81  E-value=3.3e-18  Score=147.59  Aligned_cols=183  Identities=16%  Similarity=0.265  Sum_probs=127.9

Q ss_pred             CCCCCcc-c-CHHHHHHHHHHHhc--C-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543           10 KTLDQVI-V-HQDIAQNLKKLVTE--Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (354)
Q Consensus        10 ~~~~~~~-g-~~~~~~~l~~~l~~--~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
                      -+|++++ | +..+.+.++.+.+.  + ..++++|+||+|+|||++++++++++...+...                   
T Consensus        16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v-------------------   76 (234)
T PRK05642         16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPA-------------------   76 (234)
T ss_pred             ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcE-------------------
Confidence            3899987 3 34445556555443  1 124599999999999999999998764322111                   


Q ss_pred             cccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhhccC-ce
Q 018543           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA-SC  161 (354)
Q Consensus        85 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~~-~~  161 (354)
                                +.+...+...    ....+++.+.           +..+++|||++.+.  +..+..|+.+++.... +.
T Consensus        77 ----------~y~~~~~~~~----~~~~~~~~~~-----------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~  131 (234)
T PRK05642         77 ----------VYLPLAELLD----RGPELLDNLE-----------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGR  131 (234)
T ss_pred             ----------EEeeHHHHHh----hhHHHHHhhh-----------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCC
Confidence                      1111111000    0111222211           23689999998774  4556779998876443 45


Q ss_pred             eEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 018543          162 RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (354)
Q Consensus       162 ~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~  234 (354)
                      .+|++++.+.    ...+.++||+   .++.+.+|+.++...+++..+...++.++++++++|++.+.||+|.+.+.|+.
T Consensus       132 ~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~  211 (234)
T PRK05642        132 RLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLER  211 (234)
T ss_pred             EEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            6677666543    3469999998   78999999999999999988888899999999999999999999999999886


Q ss_pred             HH
Q 018543          235 CR  236 (354)
Q Consensus       235 ~~  236 (354)
                      +-
T Consensus       212 l~  213 (234)
T PRK05642        212 LD  213 (234)
T ss_pred             HH
Confidence            63

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.81  E-value=2e-18  Score=152.94  Aligned_cols=187  Identities=18%  Similarity=0.276  Sum_probs=130.6

Q ss_pred             CcccCHHHHHHHHHHHh----------cC-----CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543           14 QVIVHQDIAQNLKKLVT----------EQ-----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~----------~~-----~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~   78 (354)
                      +++|.+++++.+..++.          .|     ...|++|+||||||||++|+++++.+...+...             
T Consensus        23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~-------------   89 (284)
T TIGR02880        23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVR-------------   89 (284)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcc-------------
Confidence            58999888887766432          12     112699999999999999999999774322100             


Q ss_pred             CccccccccccccCceeeeCCCC-----CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---------CH
Q 018543           79 SRNIDLELTTLSSANHVELSPSD-----AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SR  144 (354)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~  144 (354)
                                  ....+.++..+     .+. ....+++.++.   .         ...++||||++.|         ..
T Consensus        90 ------------~~~~v~v~~~~l~~~~~g~-~~~~~~~~~~~---a---------~~gvL~iDEi~~L~~~~~~~~~~~  144 (284)
T TIGR02880        90 ------------KGHLVSVTRDDLVGQYIGH-TAPKTKEILKR---A---------MGGVLFIDEAYYLYRPDNERDYGQ  144 (284)
T ss_pred             ------------cceEEEecHHHHhHhhccc-chHHHHHHHHH---c---------cCcEEEEechhhhccCCCccchHH
Confidence                        00011111100     010 00122333322   1         1269999999977         35


Q ss_pred             HHHHHHHHHHhhccCceeEEEEecCCC-----cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018543          145 EAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (354)
Q Consensus       145 ~~~~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~  218 (354)
                      +.++.|++.|+....++++|++++...     .+.|+++|||. .|+|++++.+++..++.+.+.+.+..+++++++.+.
T Consensus       145 ~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~  224 (284)
T TIGR02880       145 EAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFA  224 (284)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence            678899999998776777666655431     35699999995 799999999999999999999988899999988887


Q ss_pred             HH--------cCCCHHHHHHHHHHHHhc
Q 018543          219 EK--------SNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       219 ~~--------s~gd~R~ai~~L~~~~~~  238 (354)
                      .+        ..||+|.+.|.++.+...
T Consensus       225 ~~l~~~~~~~~~GN~R~lrn~ve~~~~~  252 (284)
T TIGR02880       225 DYIALRRTQPHFANARSIRNAIDRARLR  252 (284)
T ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence            75        459999999999977654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.80  E-value=1.9e-18  Score=166.50  Aligned_cols=215  Identities=13%  Similarity=0.191  Sum_probs=137.0

Q ss_pred             cccCCCCCCCcccCHHHHHHHHHHHh----cCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCC-------Cccccccccc
Q 018543            5 DKYRPKTLDQVIVHQDIAQNLKKLVT----EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKT   72 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~~~~~l~~~l~----~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~-------~~~~~~~~~~   72 (354)
                      .-|.|   +.+.|.++-.+.|...+.    .....+ ++++||||||||++++.+.+++....       ...++++|..
T Consensus       750 ~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~  826 (1164)
T PTZ00112        750 LDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN  826 (1164)
T ss_pred             cccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence            34677   677888777666655554    333334 57999999999999999998774211       1223344332


Q ss_pred             ccccCCCccccccccccccCcee-eeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHH
Q 018543           73 WKIDAGSRNIDLELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLR  151 (354)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll  151 (354)
                      +.  .+..    .+..+.  ..+ ...+ ..+......+..++.....       ......||||||+|.|....++.|+
T Consensus       827 Ls--tp~s----IYqvI~--qqL~g~~P-~~GlsS~evLerLF~~L~k-------~~r~v~IIILDEID~L~kK~QDVLY  890 (1164)
T PTZ00112        827 VV--HPNA----AYQVLY--KQLFNKKP-PNALNSFKILDRLFNQNKK-------DNRNVSILIIDEIDYLITKTQKVLF  890 (1164)
T ss_pred             cC--CHHH----HHHHHH--HHHcCCCC-CccccHHHHHHHHHhhhhc-------ccccceEEEeehHhhhCccHHHHHH
Confidence            11  0000    000000  000 0011 1111111122222222111       1123469999999999877788888


Q ss_pred             HHHhhc---cCceeEEEEecCC---CcccHHHhhhcc--eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---H
Q 018543          152 RTMEKY---SASCRLILCCNSS---SKVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE---K  220 (354)
Q Consensus       152 ~~le~~---~~~~~~Il~~~~~---~~l~~~l~sR~~--~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~---~  220 (354)
                      .+++.+   .....+|+++|+.   ..+.+.++||+.  .+.|+|++.+++..+|..++......+++++++.+|+   .
T Consensus       891 nLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq  970 (1164)
T PTZ00112        891 TLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN  970 (1164)
T ss_pred             HHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence            877643   2346677788764   467889999986  4999999999999999999886545689999999998   6


Q ss_pred             cCCCHHHHHHHHHHHHhc
Q 018543          221 SNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       221 s~gd~R~ai~~L~~~~~~  238 (354)
                      ..||+|+|+.+|..++..
T Consensus       971 ~SGDARKALDILRrAgEi  988 (1164)
T PTZ00112        971 VSGDIRKALQICRKAFEN  988 (1164)
T ss_pred             cCCHHHHHHHHHHHHHhh
Confidence            789999999999988753

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=9.1e-19  Score=152.42  Aligned_cols=182  Identities=20%  Similarity=0.310  Sum_probs=131.0

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   70 (354)
                      +++-.-.+++|+-|-++.++.++..++-           | .+|. +|||||||||||.+|+++|++..+   ..+.+.+
T Consensus       142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A---tFIrvvg  218 (406)
T COG1222         142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA---TFIRVVG  218 (406)
T ss_pred             eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc---eEEEecc
Confidence            4444556899999999999999998852           3 2333 999999999999999999986421   1222222


Q ss_pred             ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC--------
Q 018543           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--------  142 (354)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l--------  142 (354)
                      ..+.                    -.|..     ...-.+|+++......         .+.||||||+|.+        
T Consensus       219 SElV--------------------qKYiG-----EGaRlVRelF~lArek---------aPsIIFiDEIDAIg~kR~d~~  264 (406)
T COG1222         219 SELV--------------------QKYIG-----EGARLVRELFELAREK---------APSIIFIDEIDAIGAKRFDSG  264 (406)
T ss_pred             HHHH--------------------HHHhc-----cchHHHHHHHHHHhhc---------CCeEEEEechhhhhcccccCC
Confidence            1111                    00111     1112478887665543         3489999999987        


Q ss_pred             ---CHHHHHHHHHHHhh-----ccCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543          143 ---SREAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (354)
Q Consensus       143 ---~~~~~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~  211 (354)
                         +.+.|..|+.+|.+     +..++++|++||.++-+.|+|.+-.   ..|+|+.|+.+...++++-+..+.++. ++
T Consensus       265 t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~d  343 (406)
T COG1222         265 TSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DD  343 (406)
T ss_pred             CCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cC
Confidence               35688888888865     4578999999999999999999854   369999999999999999988876653 12


Q ss_pred             HHHHHHHHHcCC
Q 018543          212 GFATRLAEKSNR  223 (354)
Q Consensus       212 ~~l~~i~~~s~g  223 (354)
                      -.++.|+..+.|
T Consensus       344 vd~e~la~~~~g  355 (406)
T COG1222         344 VDLELLARLTEG  355 (406)
T ss_pred             cCHHHHHHhcCC
Confidence            236777776655

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.79  E-value=1.8e-18  Score=172.39  Aligned_cols=202  Identities=18%  Similarity=0.227  Sum_probs=146.5

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   82 (354)
                      ++++.||.++++++|+++.+..+...+..+..++++|+||||||||++++.+|+.+..........+..           
T Consensus       172 l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~-----------  240 (731)
T TIGR02639       172 LTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAK-----------  240 (731)
T ss_pred             HHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCe-----------
Confidence            567889999999999999999888888888777899999999999999999999874332111000111           


Q ss_pred             cccccccccCceeeeCCC------CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---------HHHH
Q 018543           83 DLELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQ  147 (354)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~  147 (354)
                                 .+.++..      .+.......++++++++...         .+.|+||||+|.+.         .+++
T Consensus       241 -----------~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~---------~~~ILfiDEih~l~~~g~~~~~~~~~~  300 (731)
T TIGR02639       241 -----------IYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE---------PNAILFIDEIHTIVGAGATSGGSMDAS  300 (731)
T ss_pred             -----------EEEecHHHHhhhccccchHHHHHHHHHHHHhcc---------CCeEEEEecHHHHhccCCCCCccHHHH
Confidence                       1111111      01111112455555544321         24799999999884         3457


Q ss_pred             HHHHHHHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHH
Q 018543          148 HSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLA  218 (354)
Q Consensus       148 ~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~  218 (354)
                      +.|+..++.  ....+|.+||..+     ...+++.+||+.|.+++|+.++...+|+.....    .++.++++++..++
T Consensus       301 ~~L~~~l~~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~  378 (731)
T TIGR02639       301 NLLKPALSS--GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAV  378 (731)
T ss_pred             HHHHHHHhC--CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHH
Confidence            778887774  4577788777532     578899999999999999999999999977654    35789999999999


Q ss_pred             HHcCC---C---HHHHHHHHHHHHh
Q 018543          219 EKSNR---S---LRRAILSFETCRV  237 (354)
Q Consensus       219 ~~s~g---d---~R~ai~~L~~~~~  237 (354)
                      ..+.+   +   +++|+.+++.++.
T Consensus       379 ~ls~ryi~~r~~P~kai~lld~a~a  403 (731)
T TIGR02639       379 ELSARYINDRFLPDKAIDVIDEAGA  403 (731)
T ss_pred             HhhhcccccccCCHHHHHHHHHhhh
Confidence            98754   2   7889999997765

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.78  E-value=1.2e-17  Score=156.12  Aligned_cols=190  Identities=15%  Similarity=0.244  Sum_probs=131.2

Q ss_pred             CCCCcc-c--CHHHHHHHHHHHhc-----C-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543           11 TLDQVI-V--HQDIAQNLKKLVTE-----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus        11 ~~~~~~-g--~~~~~~~l~~~l~~-----~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      +|++++ |  +..+....+.+.+.     + ...+++||||+|+|||++++++++++...+...+++....+.       
T Consensus       109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~-------  181 (445)
T PRK12422        109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT-------  181 (445)
T ss_pred             cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH-------
Confidence            788887 4  34344566666542     2 223499999999999999999999875432221111111000       


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHH-HHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhhc-
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQE-VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKY-  157 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~~-  157 (354)
                                            ..-...++. ....+...       ....++++|||++.+.  ...++.|+.++... 
T Consensus       182 ----------------------~~~~~~l~~~~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~  232 (445)
T PRK12422        182 ----------------------EHLVSAIRSGEMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLH  232 (445)
T ss_pred             ----------------------HHHHHHHhcchHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHH
Confidence                                  000000000 00011111       1244799999999885  34677888877543 


Q ss_pred             cCceeEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Q 018543          158 SASCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAIL  230 (354)
Q Consensus       158 ~~~~~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~  230 (354)
                      ..+..+|++++.+.    .+.+.++||+   .++.+++|+.+++..+|++.+...++.++++++++|+....+|+|++++
T Consensus       233 ~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g  312 (445)
T PRK12422        233 TEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLH  312 (445)
T ss_pred             HCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHH
Confidence            23467888887653    5678999998   5899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 018543          231 SFETCR  236 (354)
Q Consensus       231 ~L~~~~  236 (354)
                      .|+.++
T Consensus       313 ~l~~l~  318 (445)
T PRK12422        313 ALTLLA  318 (445)
T ss_pred             HHHHHH
Confidence            999875

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.78  E-value=9.5e-18  Score=168.31  Aligned_cols=203  Identities=16%  Similarity=0.241  Sum_probs=145.1

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      +++.||.++++++|+++.++.+...+..+..++.+|+||||||||++++.+|+.+....... .+               
T Consensus       178 ~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~-~l---------------  241 (852)
T TIGR03345       178 TAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPP-AL---------------  241 (852)
T ss_pred             HHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCc-cc---------------
Confidence            56789999999999999988888888788888899999999999999999999874322110 00               


Q ss_pred             ccccccccCceeeeCCC------CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--------HHHHH
Q 018543           84 LELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHS  149 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~~  149 (354)
                            .....+.+...      .....-...++.+++++...        +.+.|+||||+|.+..        ++.+.
T Consensus       242 ------~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~--------~~~~ILfIDEih~l~~~g~~~~~~d~~n~  307 (852)
T TIGR03345       242 ------RNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS--------PQPIILFIDEAHTLIGAGGQAGQGDAANL  307 (852)
T ss_pred             ------cCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhc--------CCCeEEEEeChHHhccCCCccccccHHHH
Confidence                  00111111111      11111113466666655432        2347999999999853        23345


Q ss_pred             HHHHHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHH
Q 018543          150 LRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEK  220 (354)
Q Consensus       150 Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~  220 (354)
                      |+..++.  +...+|.+|+..+     ...++|.+||+.|.+++|+.++...+|+.....    .++.++++++..++..
T Consensus       308 Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~l  385 (852)
T TIGR03345       308 LKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVEL  385 (852)
T ss_pred             hhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHH
Confidence            7777765  4577777777542     588999999999999999999999997665543    4688999999999998


Q ss_pred             cCCC------HHHHHHHHHHHHhc
Q 018543          221 SNRS------LRRAILSFETCRVQ  238 (354)
Q Consensus       221 s~gd------~R~ai~~L~~~~~~  238 (354)
                      +.+-      +.+||.+|+.+|..
T Consensus       386 s~ryi~~r~LPDKAIdlldea~a~  409 (852)
T TIGR03345       386 SHRYIPGRQLPDKAVSLLDTACAR  409 (852)
T ss_pred             cccccccccCccHHHHHHHHHHHH
Confidence            8653      56899999977653

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.77  E-value=4.1e-17  Score=153.18  Aligned_cols=193  Identities=12%  Similarity=0.181  Sum_probs=131.1

Q ss_pred             CCCCCCcc-c--CHHHHHHHHHHHhc-CC-CCeEEEeCCCCCcHHHHHHHHHHHhcCCC--CcccccccccccccCCCcc
Q 018543            9 PKTLDQVI-V--HQDIAQNLKKLVTE-QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         9 P~~~~~~~-g--~~~~~~~l~~~l~~-~~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~   81 (354)
                      +.+|+.++ |  +..+......+.+. |. .++++||||+|+|||++++++++++....  ...+++....+.       
T Consensus       111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~-------  183 (450)
T PRK14087        111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA-------  183 (450)
T ss_pred             ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-------
Confidence            46888887 3  33355556666553 32 23499999999999999999999774321  111111111110       


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHH---HHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhh
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQ---EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEK  156 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~  156 (354)
                                            ..-...++   +.+..+...       -....+++|||++.+.  ...++.|+.++..
T Consensus       184 ----------------------~~~~~~l~~~~~~~~~~~~~-------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~  234 (450)
T PRK14087        184 ----------------------RKAVDILQKTHKEIEQFKNE-------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNN  234 (450)
T ss_pred             ----------------------HHHHHHHHHhhhHHHHHHHH-------hccCCEEEEeccccccCCHHHHHHHHHHHHH
Confidence                                  00000000   011111111       1234799999999886  5678888888865


Q ss_pred             cc-CceeEEEEecCCC----cccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Q 018543          157 YS-ASCRLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGL--QLPSGFATRLAEKSNRSLR  226 (354)
Q Consensus       157 ~~-~~~~~Il~~~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~--~i~~~~l~~i~~~s~gd~R  226 (354)
                      .. .+..+|++++.+.    .+.+.++||+.   ++.+++|+.+++..+|++.+...|+  .++++++++|++.++||+|
T Consensus       235 ~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R  314 (450)
T PRK14087        235 FIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVR  314 (450)
T ss_pred             HHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHH
Confidence            43 3346777777654    46688999974   7999999999999999999998885  6999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 018543          227 RAILSFETCRV  237 (354)
Q Consensus       227 ~ai~~L~~~~~  237 (354)
                      .+.+.|..+..
T Consensus       315 ~L~gaL~~l~~  325 (450)
T PRK14087        315 KIKGSVSRLNF  325 (450)
T ss_pred             HHHHHHHHHHH
Confidence            99999987643

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.77  E-value=3.1e-17  Score=151.93  Aligned_cols=218  Identities=18%  Similarity=0.234  Sum_probs=129.8

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhc----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCC------cccccccccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA------EKVKVENKTW   73 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~------~~~~~~~~~~   73 (354)
                      -..|.|   ++++|+++..+.|..++..    +..++++++||||+|||++++.+++.+.....      ..+++++...
T Consensus         9 ~~~~~p---~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~   85 (365)
T TIGR02928         9 EPDYVP---DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL   85 (365)
T ss_pred             CCCCCC---CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence            467888   4789998888777777653    44456999999999999999999987743211      1122222111


Q ss_pred             cccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHH---HHHH
Q 018543           74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA---QHSL  150 (354)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~---~~~L  150 (354)
                      .  .+..-...-+..+..   ........+.......+.+.+.+..        .+++.||||||+|.+....   ...|
T Consensus        86 ~--~~~~~~~~i~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlvIDE~d~L~~~~~~~L~~l  152 (365)
T TIGR02928        86 D--TLYQVLVELANQLRG---SGEEVPTTGLSTSEVFRRLYKELNE--------RGDSLIIVLDEIDYLVGDDDDLLYQL  152 (365)
T ss_pred             C--CHHHHHHHHHHHHhh---cCCCCCCCCCCHHHHHHHHHHHHHh--------cCCeEEEEECchhhhccCCcHHHHhH
Confidence            0  000000000000000   0000000111111112222222211        2345789999999995322   2334


Q ss_pred             HHH--Hhhcc-CceeEEEEecCCC---cccHHHhhhcc--eeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH-
Q 018543          151 RRT--MEKYS-ASCRLILCCNSSS---KVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAE-  219 (354)
Q Consensus       151 l~~--le~~~-~~~~~Il~~~~~~---~l~~~l~sR~~--~i~~~~~~~~~~~~~L~~~~~~--~~~~i~~~~l~~i~~-  219 (354)
                      ++.  ..+.+ .++.+|+++|+++   .+.+.+.||+.  .+.|+|++.+++..++..++..  .+..+++++++.++. 
T Consensus       153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~  232 (365)
T TIGR02928       153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL  232 (365)
T ss_pred             hccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence            443  22222 4577899998875   57788899984  7999999999999999998863  233477887766544 


Q ss_pred             --HcCCCHHHHHHHHHHHHh
Q 018543          220 --KSNRSLRRAILSFETCRV  237 (354)
Q Consensus       220 --~s~gd~R~ai~~L~~~~~  237 (354)
                        .+.||+|.++++++.++.
T Consensus       233 ~~~~~Gd~R~al~~l~~a~~  252 (365)
T TIGR02928       233 AAQEHGDARKAIDLLRVAGE  252 (365)
T ss_pred             HHHhcCCHHHHHHHHHHHHH
Confidence              557999999999987653

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.77  E-value=1.5e-17  Score=141.76  Aligned_cols=192  Identities=21%  Similarity=0.355  Sum_probs=125.9

Q ss_pred             CCCCcc-c--CHHHHHHHHHHHhcCC--CCeEEEeCCCCCcHHHHHHHHHHHhcCC--CCcccccccccccccCCCcccc
Q 018543           11 TLDQVI-V--HQDIAQNLKKLVTEQD--CPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        11 ~~~~~~-g--~~~~~~~l~~~l~~~~--~~~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      ||+.++ |  ++.+....+...+...  .+.++||||+|+|||++++++++++...  +...++++...|.         
T Consensus         6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~---------   76 (219)
T PF00308_consen    6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI---------   76 (219)
T ss_dssp             SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH---------
T ss_pred             ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH---------
Confidence            789986 4  5666776666665422  2349999999999999999999987432  2111222221111         


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH--HHHHHHHHHhhc-cCc
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--AQHSLRRTMEKY-SAS  160 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--~~~~Ll~~le~~-~~~  160 (354)
                      ..+        .....       ...+.++.+.+           ...++++||+++.+...  .+..|..+++.. ..+
T Consensus        77 ~~~--------~~~~~-------~~~~~~~~~~~-----------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~  130 (219)
T PF00308_consen   77 REF--------ADALR-------DGEIEEFKDRL-----------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG  130 (219)
T ss_dssp             HHH--------HHHHH-------TTSHHHHHHHH-----------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHH--------HHHHH-------cccchhhhhhh-----------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC
Confidence            000        00000       00011121111           23489999999998644  588899888764 345


Q ss_pred             eeEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543          161 CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       161 ~~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                      ..+|++++.+.    .+.+.++||+   .++.+.+|+.++...+|++.+...|+.++++++++|++...+|+|.....|+
T Consensus       131 k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~  210 (219)
T PF00308_consen  131 KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALN  210 (219)
T ss_dssp             SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred             CeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence            67888886553    4678999996   4799999999999999999999999999999999999999999999999988


Q ss_pred             HHHh
Q 018543          234 TCRV  237 (354)
Q Consensus       234 ~~~~  237 (354)
                      .+.+
T Consensus       211 ~l~~  214 (219)
T PF00308_consen  211 RLDA  214 (219)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK07452 DNA polymerase III subunit delta; Validated

Probab=99.77  E-value=5e-16  Score=141.45  Aligned_cols=270  Identities=18%  Similarity=0.215  Sum_probs=194.2

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI  114 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~  114 (354)
                      |.++|||+...-+...++.+.+.+..++....       .                   ...+...     +...+.+++
T Consensus         2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~f-------n-------------------~~~~d~~-----~~~~~~~~~   50 (326)
T PRK07452          2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSF-------N-------------------YSRLDGD-----DADQAIQAL   50 (326)
T ss_pred             CEEEEEcChHHHHHHHHHHHHHHhCCchhhhc-------c-------------------hhhcCCc-----cchHHHHHH
Confidence            56999999998888888888876643321110       0                   0111111     111244555


Q ss_pred             HHHHhcCCCCCCCCCCceEEEEeCCCcC---CHHHHHHHHHHHhhccCceeEEEEecC-CC---cccHHHhhhcceeeec
Q 018543          115 KEMAKNRPIDTKGKRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNS-SS---KVTEAIRSRCLNIRIN  187 (354)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~viiiDE~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~-~~---~l~~~l~sR~~~i~~~  187 (354)
                      ..+ .+.|+    .+++++|++++++.+   +.+..+.|.++++.+++++.+|+++.. .+   +....+...+.+..|.
T Consensus        51 ~~~-~t~pf----f~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~  125 (326)
T PRK07452         51 NEA-MTPPF----GSGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFS  125 (326)
T ss_pred             HHh-cCCCC----CCCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEec
Confidence            443 33343    467899999998654   567888999999998888888886543 22   4566777788888886


Q ss_pred             CC---CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--C--CCCCCCC--CCCCCCHHHHHH
Q 018543          188 SP---TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ--Q--YPFKDNQ--AIPAMDWEEFVF  258 (354)
Q Consensus       188 ~~---~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~--~--~~~~~~~--~~~~~~~~~~~~  258 (354)
                      ++   +.+++..|+...+.+.|+.+++++++.+++..++|++.+.+.++.++..  +  ..++.++  .++.. .+..++
T Consensus       126 ~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~-~~~~if  204 (326)
T PRK07452        126 LIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSN-TTQNSL  204 (326)
T ss_pred             CCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhcc-CcCcHH
Confidence            65   4577999999999999999999999999999999999999999998876  2  2566655  22222 346788


Q ss_pred             HHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----------------------------------
Q 018543          259 EIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-----------------------------------  303 (354)
Q Consensus       259 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-----------------------------------  303 (354)
                      +++++++.    ++..++...+.+++..|++|..|+..+.+++..                                   
T Consensus       205 ~l~dai~~----~~~~~A~~~l~~L~~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~  280 (326)
T PRK07452        205 QLADALLQ----GNTGKALALLDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRK  280 (326)
T ss_pred             HHHHHHHC----CCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHH
Confidence            99999987    677778788888888899888776544333221                                   


Q ss_pred             ---hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543          304 ---RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       304 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~  345 (354)
                         +++.+....++..+.+.+..++.|..+...||.++.+++..+
T Consensus       281 ~~~~~s~~~L~~~l~~L~~~D~~iK~g~~~~~~le~~i~~~~~~~  325 (326)
T PRK07452        281 EVQGLSSQQLLKLLPLLLDLEASLKQGANPINALQDKLIELCQLL  325 (326)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence               233334556778888899999999888889999999888653

>PRK09087 hypothetical protein; Validated

Probab=99.77  E-value=1.6e-17  Score=142.10  Aligned_cols=170  Identities=15%  Similarity=0.202  Sum_probs=123.0

Q ss_pred             CCCCccc---CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543           11 TLDQVIV---HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (354)
Q Consensus        11 ~~~~~~g---~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
                      +|++++.   +..+...+.++.. ...+.++|+||+|+||||++++++...     +.                      
T Consensus        19 ~~~~Fi~~~~N~~a~~~l~~~~~-~~~~~l~l~G~~GsGKThLl~~~~~~~-----~~----------------------   70 (226)
T PRK09087         19 GRDDLLVTESNRAAVSLVDHWPN-WPSPVVVLAGPVGSGKTHLASIWREKS-----DA----------------------   70 (226)
T ss_pred             ChhceeecCchHHHHHHHHhccc-CCCCeEEEECCCCCCHHHHHHHHHHhc-----CC----------------------
Confidence            7999884   5667777776553 223459999999999999999988642     00                      


Q ss_pred             ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC-ceeEEEE
Q 018543           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA-SCRLILC  166 (354)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~-~~~~Il~  166 (354)
                             ..+.....       ..+.+...            ...+++|||++.+. ..+.+|+.++..... +..+|++
T Consensus        71 -------~~i~~~~~-------~~~~~~~~------------~~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilit  123 (226)
T PRK09087         71 -------LLIHPNEI-------GSDAANAA------------AEGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMT  123 (226)
T ss_pred             -------EEecHHHc-------chHHHHhh------------hcCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEE
Confidence                   00100000       01111110            11579999999874 335678888855433 4567776


Q ss_pred             ecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543          167 CNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC  235 (354)
Q Consensus       167 ~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~  235 (354)
                      ++.+.    ...+.++||+   .++++++|+.+++..+|++.++..++.++++++++|++.+.||+|.++..++.+
T Consensus       124 s~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L  199 (226)
T PRK09087        124 SRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRL  199 (226)
T ss_pred             CCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            76544    2478999998   799999999999999999999999999999999999999999999999876654

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.76  E-value=4.9e-17  Score=152.49  Aligned_cols=193  Identities=18%  Similarity=0.249  Sum_probs=128.2

Q ss_pred             CCCCcc-c--CHHHHHHHHHHHhc-CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc--ccccccccccccCCCccccc
Q 018543           11 TLDQVI-V--HQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGSRNIDL   84 (354)
Q Consensus        11 ~~~~~~-g--~~~~~~~l~~~l~~-~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~   84 (354)
                      +|++++ |  +..+......+..+ +..++++||||+|+|||++++++++++....++  .+++++..|.          
T Consensus       103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~----------  172 (440)
T PRK14088        103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL----------  172 (440)
T ss_pred             cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH----------
Confidence            788887 4  33344555555543 334459999999999999999999987543211  1111111110          


Q ss_pred             cccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhhcc-Cce
Q 018543           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYS-ASC  161 (354)
Q Consensus        85 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~-~~~  161 (354)
                                -++.. ....   ....++.+.+.          .+.++++|||++.+.  ...+..|+.++.... .+.
T Consensus       173 ----------~~~~~-~~~~---~~~~~f~~~~~----------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k  228 (440)
T PRK14088        173 ----------NDLVD-SMKE---GKLNEFREKYR----------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGK  228 (440)
T ss_pred             ----------HHHHH-HHhc---ccHHHHHHHHH----------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCC
Confidence                      00000 0000   00111111111          134799999999773  335677888775543 334


Q ss_pred             eEEEEecCCC----cccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 018543          162 RLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (354)
Q Consensus       162 ~~Il~~~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~  234 (354)
                      .+|+++++..    .+.+.++||+.   ++.+++|+.+.+..+|++.+..+++.++++++++|++.+.||+|.+...|..
T Consensus       229 ~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~  308 (440)
T PRK14088        229 QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIK  308 (440)
T ss_pred             eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHH
Confidence            5666665443    46688999986   8999999999999999999999999999999999999999999998888776


Q ss_pred             HHh
Q 018543          235 CRV  237 (354)
Q Consensus       235 ~~~  237 (354)
                      +..
T Consensus       309 l~~  311 (440)
T PRK14088        309 LLV  311 (440)
T ss_pred             HHH
Confidence            543

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.75  E-value=4.8e-17  Score=153.98  Aligned_cols=192  Identities=19%  Similarity=0.311  Sum_probs=129.3

Q ss_pred             CCCCcc-c--CHHHHHHHHHHHhc-C-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc--ccccccccccccCCCcccc
Q 018543           11 TLDQVI-V--HQDIAQNLKKLVTE-Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        11 ~~~~~~-g--~~~~~~~l~~~l~~-~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~--~~~~~~~~~~~~~~~~~~~   83 (354)
                      +|++++ |  +..+....+.+.+. + ..++++||||+|+|||++++++++++....++  .+++.+..+.         
T Consensus       120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~---------  190 (450)
T PRK00149        120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT---------  190 (450)
T ss_pred             cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH---------
Confidence            788865 3  45566666666654 2 22349999999999999999999987543211  1111111100         


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--HHHHHHHHHHhhcc-Cc
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYS-AS  160 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~Ll~~le~~~-~~  160 (354)
                             .    ++.. ....   ....++.+.+           ....+++|||++.+..  ..+..|+.+++... .+
T Consensus       191 -------~----~~~~-~~~~---~~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~  244 (450)
T PRK00149        191 -------N----DFVN-ALRN---NTMEEFKEKY-----------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG  244 (450)
T ss_pred             -------H----HHHH-HHHc---CcHHHHHHHH-----------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC
Confidence                   0    0000 0000   0011121111           1347999999998743  45677888775532 33


Q ss_pred             eeEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543          161 CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       161 ~~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                      ..+|++++.+.    .+.+.++||+   .++.|++|+.+++..+|++.+...++.++++++++|++.+.||+|.+...|.
T Consensus       245 ~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~  324 (450)
T PRK00149        245 KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN  324 (450)
T ss_pred             CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence            45777777654    3668899998   4799999999999999999999999999999999999999999999888777


Q ss_pred             HHHh
Q 018543          234 TCRV  237 (354)
Q Consensus       234 ~~~~  237 (354)
                      .+..
T Consensus       325 ~l~~  328 (450)
T PRK00149        325 RLIA  328 (450)
T ss_pred             HHHH
Confidence            6543

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.75  E-value=6.1e-16  Score=147.11  Aligned_cols=197  Identities=17%  Similarity=0.283  Sum_probs=130.8

Q ss_pred             ccCC-CCCCCccc---CHHHHHHHHHHHhc-CCC-CeEEEeCCCCCcHHHHHHHHHHHhcCC--CCcccccccccccccC
Q 018543            6 KYRP-KTLDQVIV---HQDIAQNLKKLVTE-QDC-PHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDA   77 (354)
Q Consensus         6 kyrP-~~~~~~~g---~~~~~~~l~~~l~~-~~~-~~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~   77 (354)
                      +..| .+|++++.   +..+...+..+++. +.. +.++|||++|+|||+|++++++++...  +...+++....+.   
T Consensus       280 ~L~~~~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~---  356 (617)
T PRK14086        280 RLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT---  356 (617)
T ss_pred             CCCCCCCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH---
Confidence            3344 37999873   23344455555543 222 239999999999999999999987431  1111111111100   


Q ss_pred             CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHh
Q 018543           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTME  155 (354)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le  155 (354)
                                       -++..   .... .....+.+.+           .+..+|+|||++.+.  ...+..|+.+++
T Consensus       357 -----------------~el~~---al~~-~~~~~f~~~y-----------~~~DLLlIDDIq~l~gke~tqeeLF~l~N  404 (617)
T PRK14086        357 -----------------NEFIN---SIRD-GKGDSFRRRY-----------REMDILLVDDIQFLEDKESTQEEFFHTFN  404 (617)
T ss_pred             -----------------HHHHH---HHHh-ccHHHHHHHh-----------hcCCEEEEehhccccCCHHHHHHHHHHHH
Confidence                             00000   0000 0011111111           234899999999884  345778888886


Q ss_pred             hccC-ceeEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Q 018543          156 KYSA-SCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRR  227 (354)
Q Consensus       156 ~~~~-~~~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~  227 (354)
                      .... +..+|++++...    .+.+.|+||+   .++.+.+|+.+....+|++.+...++.++++++++|+....+|+|.
T Consensus       405 ~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~  484 (617)
T PRK14086        405 TLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRE  484 (617)
T ss_pred             HHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHH
Confidence            6533 456777777653    4778899997   4799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 018543          228 AILSFETCRV  237 (354)
Q Consensus       228 ai~~L~~~~~  237 (354)
                      +...|..+..
T Consensus       485 LegaL~rL~a  494 (617)
T PRK14086        485 LEGALIRVTA  494 (617)
T ss_pred             HHHHHHHHHH
Confidence            9888876643

>PRK05629 hypothetical protein; Validated

Probab=99.75  E-value=1.5e-15  Score=137.39  Aligned_cols=212  Identities=14%  Similarity=0.083  Sum_probs=169.5

Q ss_pred             CCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC---cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH
Q 018543          128 KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS---KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK  204 (354)
Q Consensus       128 ~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~  204 (354)
                      .+++++|++++++.......+.++.+++++++.+.+|+++....   ++.+.++..+.++.+.++...++..|+.+.+.+
T Consensus        62 F~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~  141 (318)
T PRK05629         62 FGEDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKN  141 (318)
T ss_pred             cCCceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHH
Confidence            46779999999877666667788999999888888888776443   345578888889999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHH
Q 018543          205 EGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-QYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLY  281 (354)
Q Consensus       205 ~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  281 (354)
                      .|+.+++++++.+++.+++|+..+.+.++.++.+ +..++.++  .+.....+..+|++++++..    ++..++...+.
T Consensus       142 ~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~----g~~~~Al~~l~  217 (318)
T PRK05629        142 HGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACA----GQVSKAVASTR  217 (318)
T ss_pred             cCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHc----CCHHHHHHHHH
Confidence            9999999999999999999999999999988765 34566655  34455677889999999998    67778888888


Q ss_pred             HHHHcCCChHHHHHHHHHH---HH--------------------------------HhCCHHHHHHHHHHHHHHhhHhhC
Q 018543          282 ELLLNCVPPVVVLKRLLYE---LL--------------------------------KRLDAEIKHEVCHWAAYYEHKMRR  326 (354)
Q Consensus       282 ~l~~~~~~~~~il~~l~~~---~~--------------------------------~~~~~~~~~~~~~~~~~~~~~l~~  326 (354)
                      +++..|.+|..|+..+.++   +.                                ++++.+...+++..+.+.|..++.
T Consensus       218 ~l~~~g~~pi~il~~l~~~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~K~  297 (318)
T PRK05629        218 RALQLGVSPVALAAALSMKVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKG  297 (318)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence            8889999998885544322   11                                123344456778888899999997


Q ss_pred             CC-ChhHhHHHHHHHHHH
Q 018543          327 GN-KAIFHLEAFVAKFMS  343 (354)
Q Consensus       327 ~~-~~~l~l~~~i~~~~~  343 (354)
                      |+ ++.+.||.+|+++-.
T Consensus       298 ~~~d~~~~lE~~i~~~~~  315 (318)
T PRK05629        298 QGGDPEFAIESAVRRVAE  315 (318)
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            54 779999999988753

>PRK07914 hypothetical protein; Reviewed

Probab=99.75  E-value=1.9e-15  Score=136.85  Aligned_cols=269  Identities=13%  Similarity=0.119  Sum_probs=197.6

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHhcCC-CCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV  113 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~  113 (354)
                      |.++|||+.-.-.......+.+.+... +....                          +...+...+..      ..+ 
T Consensus         6 ~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~--------------------------n~~~~d~~~~~------~~~-   52 (320)
T PRK07914          6 PLHLVLGDEELLVERAVAAVLRSARQRAGTADV--------------------------PVSRMRAGDVS------TYE-   52 (320)
T ss_pred             ceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCC--------------------------ceEEeccccCC------HHH-
Confidence            349999999888777777776654331 21100                          01122222211      233 


Q ss_pred             HHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC---cccHHHhhhc-ceeeecCC
Q 018543          114 IKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS---KVTEAIRSRC-LNIRINSP  189 (354)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---~l~~~l~sR~-~~i~~~~~  189 (354)
                      +.+.. +.|+    .+++++|+++++..+..+..+.|..+++.+++.+.+|++++...   ++.++++... .++.+.++
T Consensus        53 i~~~~-t~pl----F~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~  127 (320)
T PRK07914         53 LAELL-SPSL----FAEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARI  127 (320)
T ss_pred             HHHhc-CCCC----CCCceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCC
Confidence            33444 3343    57789999999877777777889999999888788888765433   3445677664 58899998


Q ss_pred             -CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCCCC--CCCCCCHHHHHHHHHHHHH
Q 018543          190 -TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-QYPFKDNQ--AIPAMDWEEFVFEIASDIM  265 (354)
Q Consensus       190 -~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~~~  265 (354)
                       +..++..|+.+.+++.|+.+++++++.+++..++|+..+.+.++.++.+ +..++.++  .++....+..+|++++++.
T Consensus       128 ~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~  207 (320)
T PRK07914        128 TKAAERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAV  207 (320)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHH
Confidence             9999999999999999999999999999999999999999999998764 44566555  3455566778999999999


Q ss_pred             hccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------------------------hCCHHHHHH
Q 018543          266 QEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------------------------------RLDAEIKHE  312 (354)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------------------------------~~~~~~~~~  312 (354)
                      .    ++..++...+.+++..|++|..|+..+.+++..                                 +++.+....
T Consensus       208 ~----g~~~~A~~~l~~L~~~ge~p~~il~~l~~~~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~  283 (320)
T PRK07914        208 A----GDVAGAAEALRWAMMRGEPHVVLADALAEAVHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVAT  283 (320)
T ss_pred             C----CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHH
Confidence            8    677788888888999999998886544333211                                 344445667


Q ss_pred             HHHHHHHHhhHhhCC-CChhHhHHHHHHHHHHHH
Q 018543          313 VCHWAAYYEHKMRRG-NKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       313 ~~~~~~~~~~~l~~~-~~~~l~l~~~i~~~~~~~  345 (354)
                      ++..+.+.+..++.| .++.+.||.++.+++...
T Consensus       284 ~l~~l~~~D~~lK~~~~~~~~~lE~~i~~~~~~~  317 (320)
T PRK07914        284 AMRVVAALNADVKGAAADADYALESAVRRVAELV  317 (320)
T ss_pred             HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Confidence            888899999999976 566889999999987644

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.74  E-value=1.4e-15  Score=142.22  Aligned_cols=208  Identities=15%  Similarity=0.221  Sum_probs=129.4

Q ss_pred             CCcccCHHHHHHHHHHHh----cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCC--CcccccccccccccCCCccccccc
Q 018543           13 DQVIVHQDIAQNLKKLVT----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGSRNIDLEL   86 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~----~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
                      +.++|.+...+.|...+.    .+..++++++||||+|||++++.+++.+....  ...+++++....  .+. .   -+
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~--~~~-~---~~  103 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR--TRY-A---IF  103 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC--CHH-H---HH
Confidence            567888877776666653    34555699999999999999999998774332  222333322111  000 0   00


Q ss_pred             cccccCceeee-CCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC----HHHHHHHHHHHhhccC-c
Q 018543           87 TTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLRRTMEKYSA-S  160 (354)
Q Consensus        87 ~~~~~~~~i~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----~~~~~~Ll~~le~~~~-~  160 (354)
                      ..+.  ..+.- .....+.    ...+++..+.....    ..+.+.||+|||+|.+.    .+....|++.++..+. +
T Consensus       104 ~~i~--~~l~~~~~~~~~~----~~~~~~~~~~~~l~----~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~  173 (394)
T PRK00411        104 SEIA--RQLFGHPPPSSGL----SFDELFDKIAEYLD----ERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGAR  173 (394)
T ss_pred             HHHH--HHhcCCCCCCCCC----CHHHHHHHHHHHHH----hcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCe
Confidence            0000  00000 0000111    12222222221110    12345799999999885    3345556666555433 5


Q ss_pred             eeEEEEecCCC---cccHHHhhhc--ceeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---CCCHHHHHH
Q 018543          161 CRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKS---NRSLRRAIL  230 (354)
Q Consensus       161 ~~~Il~~~~~~---~l~~~l~sR~--~~i~~~~~~~~~~~~~L~~~~~~~--~~~i~~~~l~~i~~~s---~gd~R~ai~  230 (354)
                      ..+|+++|+.+   .+.+.++||+  ..+.|+|++.+++..+++.++...  ...+++++++.+++.+   .||+|.|++
T Consensus       174 v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~  253 (394)
T PRK00411        174 IGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAID  253 (394)
T ss_pred             EEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHH
Confidence            67888988764   4667788887  479999999999999999988643  2357899999998877   899999999


Q ss_pred             HHHHHH
Q 018543          231 SFETCR  236 (354)
Q Consensus       231 ~L~~~~  236 (354)
                      +|..++
T Consensus       254 ll~~a~  259 (394)
T PRK00411        254 LLRRAG  259 (394)
T ss_pred             HHHHHH
Confidence            998654

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.73  E-value=8.8e-17  Score=150.43  Aligned_cols=192  Identities=19%  Similarity=0.300  Sum_probs=127.3

Q ss_pred             CCCCcc-cC--HHHHHHHHHHHhc-CC-CCeEEEeCCCCCcHHHHHHHHHHHhcCCC--CcccccccccccccCCCcccc
Q 018543           11 TLDQVI-VH--QDIAQNLKKLVTE-QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        11 ~~~~~~-g~--~~~~~~l~~~l~~-~~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      +|++++ |.  ..+...++.+.+. +. ..+++||||+|+|||++++++++++....  ...+++.+..+.         
T Consensus       108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~---------  178 (405)
T TIGR00362       108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT---------  178 (405)
T ss_pred             cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH---------
Confidence            688854 53  3345555655553 22 23489999999999999999999875432  111111111110         


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--HHHHHHHHHHhhc-cCc
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKY-SAS  160 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~Ll~~le~~-~~~  160 (354)
                             .    .+.. .....   ...++.+.+           .+..+++|||++.+..  ..+..|+.+++.. ..+
T Consensus       179 -------~----~~~~-~~~~~---~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~  232 (405)
T TIGR00362       179 -------N----DFVN-ALRNN---KMEEFKEKY-----------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENG  232 (405)
T ss_pred             -------H----HHHH-HHHcC---CHHHHHHHH-----------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC
Confidence                   0    0000 00000   011121111           1237999999998753  4567788887553 334


Q ss_pred             eeEEEEecCCC----cccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543          161 CRLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       161 ~~~Il~~~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                      ..+|++++.+.    .+.+.++||+.   .+.|++|+.+++..+|+..+...++.++++++++|++...||+|.+...|.
T Consensus       233 ~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~  312 (405)
T TIGR00362       233 KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALN  312 (405)
T ss_pred             CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence            56777777543    46678999984   699999999999999999999999999999999999999999999777776


Q ss_pred             HHHh
Q 018543          234 TCRV  237 (354)
Q Consensus       234 ~~~~  237 (354)
                      .+..
T Consensus       313 ~l~~  316 (405)
T TIGR00362       313 RLLA  316 (405)
T ss_pred             HHHH
Confidence            5543

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.2e-16  Score=149.28  Aligned_cols=191  Identities=20%  Similarity=0.271  Sum_probs=131.6

Q ss_pred             CCCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543            8 RPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (354)
Q Consensus         8 rP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~   74 (354)
                      ...+|+|+-|+++++..++..+..           | ..|. +|||||||||||++|+++|++..++   .+.+.     
T Consensus       429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n---Flsvk-----  500 (693)
T KOG0730|consen  429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN---FLSVK-----  500 (693)
T ss_pred             CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC---eeecc-----
Confidence            346899999999999999987752           3 3333 9999999999999999999975211   11111     


Q ss_pred             ccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH---------
Q 018543           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE---------  145 (354)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~---------  145 (354)
                                      .++.+    +.+-+.....++++++...+..|         .|+|+||+|.+..+         
T Consensus       501 ----------------gpEL~----sk~vGeSEr~ir~iF~kAR~~aP---------~IiFfDEiDsi~~~R~g~~~~v~  551 (693)
T KOG0730|consen  501 ----------------GPELF----SKYVGESERAIREVFRKARQVAP---------CIIFFDEIDALAGSRGGSSSGVT  551 (693)
T ss_pred             ----------------CHHHH----HHhcCchHHHHHHHHHHHhhcCC---------eEEehhhHHhHhhccCCCccchH
Confidence                            11110    01111122357788777655443         79999999988432         


Q ss_pred             --HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 018543          146 --AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRL  217 (354)
Q Consensus       146 --~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~-~l~~i  217 (354)
                        ..+.|+.-|+-.  .+++.+|..||.++.|.+++.+  |+ ..|++++|+.+...++|+..+++  .+++++ .++.|
T Consensus       552 ~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~L  629 (693)
T KOG0730|consen  552 DRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEEL  629 (693)
T ss_pred             HHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHH
Confidence              344556655332  3567788889999999999999  76 47999999999999999988764  445555 68888


Q ss_pred             HHHcCC-CHHHHHHHHHHHHh
Q 018543          218 AEKSNR-SLRRAILSFETCRV  237 (354)
Q Consensus       218 ~~~s~g-d~R~ai~~L~~~~~  237 (354)
                      ++.+.| +-+...++.+.++.
T Consensus       630 a~~T~g~SGAel~~lCq~A~~  650 (693)
T KOG0730|consen  630 AQATEGYSGAEIVAVCQEAAL  650 (693)
T ss_pred             HHHhccCChHHHHHHHHHHHH
Confidence            887665 34444555555443

>PRK08487 DNA polymerase III subunit delta; Validated

Probab=99.72  E-value=1.4e-14  Score=131.56  Aligned_cols=275  Identities=16%  Similarity=0.209  Sum_probs=191.2

Q ss_pred             HHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543           23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (354)
Q Consensus        23 ~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (354)
                      ..+...+++|.+++ ++|||..-.-....+..+.+.+..++...                              .+..++
T Consensus         4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~------------------------------~~~~~~   53 (328)
T PRK08487          4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELK------------------------------TLYFDE   53 (328)
T ss_pred             HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhh------------------------------hhchhh
Confidence            35667778887766 99999998888888887776543222100                              000000


Q ss_pred             CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCc---ccHHHh
Q 018543          102 AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK---VTEAIR  178 (354)
Q Consensus       102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~---l~~~l~  178 (354)
                            ....+++..+... |+    .+++++|++.++..+.....+.|..+++.+++.+.+|++.....+   +...+.
T Consensus        54 ------~~~~~i~~~~~t~-pl----F~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~  122 (328)
T PRK08487         54 ------YDFEQAKDFLSQS-SL----FGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQ  122 (328)
T ss_pred             ------ccHHHHHHHHhcc-cc----cCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhc
Confidence                  1245566554443 33    467799999988777666678899999988766666654443332   222333


Q ss_pred             hh--cceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCC--CCCCCCHH
Q 018543          179 SR--CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQ--AIPAMDWE  254 (354)
Q Consensus       179 sR--~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~~~~~--~~~~~~~~  254 (354)
                      ..  ...+.|.+++..++..|+...+.+.|+.+++++++.++..+++|+..+.+.|+.++.....++.++  .++....+
T Consensus       123 ~~k~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e  202 (328)
T PRK08487        123 KKDEAVFVRFFKPNAREALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGS  202 (328)
T ss_pred             cCCCceEEEeeCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhccccc
Confidence            22  457999999999999999999999999999999999999999999999999999988876777666  44555567


Q ss_pred             HHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------------------------
Q 018543          255 EFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------------------------  303 (354)
Q Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-------------------------------  303 (354)
                      ..+|+++++++..+      .+...+.+++..+.+|..|+..+.+++..                               
T Consensus       203 ~~vF~l~dai~~g~------~a~~~l~~L~~~g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~  276 (328)
T PRK08487        203 VSFEDFFEKLLNKK------DIKDDLEKLLEEGFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAEN  276 (328)
T ss_pred             ccHHHHHHHHHCCC------cHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHH
Confidence            88999999998743      24456667777888888776544433211                               


Q ss_pred             ------hCCHHHHHHHHHHHHHHhhHhhCCCCh--hHhHHHHHHHHHHH
Q 018543          304 ------RLDAEIKHEVCHWAAYYEHKMRRGNKA--IFHLEAFVAKFMSI  344 (354)
Q Consensus       304 ------~~~~~~~~~~~~~~~~~~~~l~~~~~~--~l~l~~~i~~~~~~  344 (354)
                            +++.+....++..+.++|..++.|..+  .+-+|.++..+..+
T Consensus       277 ~~~q~~~~s~~~L~~~l~~L~e~D~~lK~g~~~~~~~~~~~~~~~~~~~  325 (328)
T PRK08487        277 LAKQAIKIKEAQYKEIFELLLEWELELKTGQKIDKNLFLLSTLIKIQKI  325 (328)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence                  233334456777777888888877444  66666666665544

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=99.72  E-value=1.8e-16  Score=140.00  Aligned_cols=105  Identities=29%  Similarity=0.314  Sum_probs=80.9

Q ss_pred             ceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC------------CCcccHHHhhhcceeeecCCCHHHHHHHH
Q 018543          131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS------------SSKVTEAIRSRCLNIRINSPTEEQIVKVL  198 (354)
Q Consensus       131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~L  198 (354)
                      +.|+||||+|.|+.++...|-+.||..- ...+|++||.            ++.++..+.+||.+|.-.|++.+++.++|
T Consensus       279 pGVLFIDEvHmLDiEcFsfLnralEs~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il  357 (398)
T PF06068_consen  279 PGVLFIDEVHMLDIECFSFLNRALESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL  357 (398)
T ss_dssp             E-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred             cceEEecchhhccHHHHHHHHHHhcCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence            5699999999999999999999998743 3567778873            34688899999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH
Q 018543          199 EFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCR  236 (354)
Q Consensus       199 ~~~~~~~~~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~  236 (354)
                      .-+++.|++.+++++++.+.... ..++|-|+++|..+.
T Consensus       358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~  396 (398)
T PF06068_consen  358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS  396 (398)
T ss_dssp             HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred             HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence            99999999999999999998854 568999999987654

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.71  E-value=4.3e-16  Score=149.17  Aligned_cols=189  Identities=20%  Similarity=0.316  Sum_probs=123.1

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHh-----------cCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~-----------~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      .+...+.+|+|++|+++++..+..++.           ....|. +||+||||||||++++++|++...+   .+.+++.
T Consensus        46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~---~~~i~~~  122 (495)
T TIGR01241        46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP---FFSISGS  122 (495)
T ss_pred             cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC---eeeccHH
Confidence            344455699999999999887776664           123333 9999999999999999999875221   1111111


Q ss_pred             cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-------
Q 018543           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------  144 (354)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------  144 (354)
                      .+.                     ...   .+. ....++++++.....         .+.||+|||+|.+..       
T Consensus       123 ~~~---------------------~~~---~g~-~~~~l~~~f~~a~~~---------~p~Il~iDEid~l~~~r~~~~~  168 (495)
T TIGR01241       123 DFV---------------------EMF---VGV-GASRVRDLFEQAKKN---------APCIIFIDEIDAVGRQRGAGLG  168 (495)
T ss_pred             HHH---------------------HHH---hcc-cHHHHHHHHHHHHhc---------CCCEEEEechhhhhhccccCcC
Confidence            110                     000   010 112355565554332         347999999988742       


Q ss_pred             -------HHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543          145 -------EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (354)
Q Consensus       145 -------~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~  212 (354)
                             ...+.|+..|+...  .++.+|.+||.++.+.+++++  |+ ..+.++.|+.++...+++..+...+.. ++.
T Consensus       169 ~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~  247 (495)
T TIGR01241       169 GGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDV  247 (495)
T ss_pred             CccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cch
Confidence                   13345666665432  346788888999999999997  55 369999999999999999887654443 344


Q ss_pred             HHHHHHHHcCC----CHHHHHH
Q 018543          213 FATRLAEKSNR----SLRRAIL  230 (354)
Q Consensus       213 ~l~~i~~~s~g----d~R~ai~  230 (354)
                      .+..+++.+.|    |++.+++
T Consensus       248 ~l~~la~~t~G~sgadl~~l~~  269 (495)
T TIGR01241       248 DLKAVARRTPGFSGADLANLLN  269 (495)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHH
Confidence            57788887665    4444444

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.71  E-value=1.7e-16  Score=147.17  Aligned_cols=185  Identities=18%  Similarity=0.268  Sum_probs=121.2

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK   67 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~   67 (354)
                      +++++++.+.+|+|+.|.+..++.++.++..           | ..| +++|+||||||||++|+++|+++..+   .+.
T Consensus       171 ~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~---fi~  247 (438)
T PTZ00361        171 VMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT---FLR  247 (438)
T ss_pred             hcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC---EEE
Confidence            4688999999999999999999888887741           1 222 39999999999999999999976221   111


Q ss_pred             cccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC----
Q 018543           68 VENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----  143 (354)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----  143 (354)
                      +.+..+                        . +.+.......+++++.....         ..+.||+|||+|.+.    
T Consensus       248 V~~seL------------------------~-~k~~Ge~~~~vr~lF~~A~~---------~~P~ILfIDEID~l~~kR~  293 (438)
T PTZ00361        248 VVGSEL------------------------I-QKYLGDGPKLVRELFRVAEE---------NAPSIVFIDEIDAIGTKRY  293 (438)
T ss_pred             Eecchh------------------------h-hhhcchHHHHHHHHHHHHHh---------CCCcEEeHHHHHHHhccCC
Confidence            111000                        0 00001111235555544332         234799999998762    


Q ss_pred             -------HHHHHHHHHHHhh-----ccCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCC
Q 018543          144 -------REAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQ  208 (354)
Q Consensus       144 -------~~~~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~  208 (354)
                             .+.+..++.++.+     ...++.+|++||+++.+.+++.+  |+. .|.|++|+.++...+++.+..+..+.
T Consensus       294 ~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~  373 (438)
T PTZ00361        294 DATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA  373 (438)
T ss_pred             CCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC
Confidence                   2334455555532     23467899999999999999875  653 69999999999999999877655442


Q ss_pred             CCHHHHHHHHHHcCC
Q 018543          209 LPSGFATRLAEKSNR  223 (354)
Q Consensus       209 i~~~~l~~i~~~s~g  223 (354)
                      - +-.++.++..+.|
T Consensus       374 ~-dvdl~~la~~t~g  387 (438)
T PTZ00361        374 E-DVDLEEFIMAKDE  387 (438)
T ss_pred             c-CcCHHHHHHhcCC
Confidence            1 1235556655443

>PRK06585 holA DNA polymerase III subunit delta; Reviewed

Probab=99.71  E-value=2.9e-14  Score=130.69  Aligned_cols=271  Identities=12%  Similarity=0.091  Sum_probs=190.5

Q ss_pred             CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHH
Q 018543           32 QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ  111 (354)
Q Consensus        32 ~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~  111 (354)
                      +..|.++|||+........++.+.+.+..+....       |.                   ...+...+..    ....
T Consensus        18 ~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~-------fn-------------------~~~~~~~e~~----~~~~   67 (343)
T PRK06585         18 PKIRAVLLYGPDRGLVRERARRLAKSVVPDLDDP-------FA-------------------VVRLDGDDLD----ADPA   67 (343)
T ss_pred             CCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCC-------cc-------------------eeeccHHHhh----cCHH
Confidence            3555699999999998888888887653322110       00                   1111111111    0144


Q ss_pred             HHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC---cccHHHh--hhcceeee
Q 018543          112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS---KVTEAIR--SRCLNIRI  186 (354)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---~l~~~l~--sR~~~i~~  186 (354)
                      +++..+.+ .|+    .+++++|++.+++   ....+.|..+++.+++.+.+|+.+...+   ++...+.  .....+.|
T Consensus        68 ~~~~~~~t-~sl----F~~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~  139 (343)
T PRK06585         68 RLEDEANA-ISL----FGGRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPC  139 (343)
T ss_pred             HHHHHHhC-CCC----CCCceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEec
Confidence            55544443 333    4677999999654   3455678888888887787877665433   2333332  23457889


Q ss_pred             cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC---CCCCCCC--CCCCCCHHHHHHHHH
Q 018543          187 NSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ---YPFKDNQ--AIPAMDWEEFVFEIA  261 (354)
Q Consensus       187 ~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~---~~~~~~~--~~~~~~~~~~~~~l~  261 (354)
                      .+++..++..|+.+++++.|+.+++++++.+++.++||++.+.+.|+.++...   ..++.++  .+.....+..+++++
T Consensus       140 ~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~  219 (343)
T PRK06585        140 YADDERDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAA  219 (343)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHH
Confidence            99999999999999999999999999999999999999999999999988763   3566655  455566778899999


Q ss_pred             HHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------------------------------
Q 018543          262 SDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------------------------------  303 (354)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--------------------------------------  303 (354)
                      +++..    ++..++...+..++..|++|..|+..+.+++..                                      
T Consensus       220 dai~~----~~~~~a~~~l~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~  295 (343)
T PRK06585        220 DAALA----GDLAAFERALDRALAEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALR  295 (343)
T ss_pred             HHHHC----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHH
Confidence            99998    666677777888888899988877644443221                                      


Q ss_pred             hCCHHHHHHHHHHHHHHhhHhhCCCCh-hHhHHHHHHHHHHH
Q 018543          304 RLDAEIKHEVCHWAAYYEHKMRRGNKA-IFHLEAFVAKFMSI  344 (354)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~l~~~i~~~~~~  344 (354)
                      +++.+...+++..+.+.+..++.|..+ .+-+|.++.+++..
T Consensus       296 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~~le~~i~~~~~~  337 (343)
T PRK06585        296 RWSLERLLRALERLQAAELDCRRNPALADAIARRVLLSIAVR  337 (343)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            233334556777888899999976654 77789999887653

>TIGR00763 lon ATP-dependent protease La

Probab=99.71  E-value=1.1e-16  Score=160.46  Aligned_cols=193  Identities=15%  Similarity=0.200  Sum_probs=122.7

Q ss_pred             CcccCHHHHHHHHHHHhc------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543           14 QVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~~------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
                      +++|++++++.+..++..      .+.++++|+||||||||++|+++|+.+..+ ...+...+.  .          +..
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~-~~~i~~~~~--~----------~~~  387 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK-FVRFSLGGV--R----------DEA  387 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC-eEEEeCCCc--c----------cHH
Confidence            478999999988876642      234569999999999999999999977322 111111000  0          000


Q ss_pred             ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHH----HHHHHHHHhhc------
Q 018543           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA----QHSLRRTMEKY------  157 (354)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~----~~~Ll~~le~~------  157 (354)
                      ..... .-.+.    +... ..+.+.+...   .       ....||+|||+|.+.+..    .++|+.+|+..      
T Consensus       388 ~i~g~-~~~~~----g~~~-g~i~~~l~~~---~-------~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~  451 (775)
T TIGR00763       388 EIRGH-RRTYV----GAMP-GRIIQGLKKA---K-------TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFS  451 (775)
T ss_pred             HHcCC-CCcee----CCCC-chHHHHHHHh---C-------cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccc
Confidence            00000 00011    1111 1122222221   1       122599999999997543    47888888631      


Q ss_pred             ---------cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHH
Q 018543          158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIA-----KKE-----GLQLPSGFATRLA  218 (354)
Q Consensus       158 ---------~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~-----~~~-----~~~i~~~~l~~i~  218 (354)
                               .+++.||++||..+.+++++++||.+|.|++|+.++...++++.+     .+.     ++.++++++..|+
T Consensus       452 d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~  531 (775)
T TIGR00763       452 DHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLI  531 (775)
T ss_pred             cccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHH
Confidence                     135778899999999999999999999999999999999887754     222     4578999999999


Q ss_pred             HHcC--CCHHHHHHHHHHH
Q 018543          219 EKSN--RSLRRAILSFETC  235 (354)
Q Consensus       219 ~~s~--gd~R~ai~~L~~~  235 (354)
                      +...  ..+|..-..++..
T Consensus       532 ~~~~~e~g~R~l~r~i~~~  550 (775)
T TIGR00763       532 KYYTREAGVRNLERQIEKI  550 (775)
T ss_pred             HhcChhcCChHHHHHHHHH
Confidence            8543  2455544444433

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=3.1e-15  Score=136.24  Aligned_cols=215  Identities=15%  Similarity=0.223  Sum_probs=135.5

Q ss_pred             cccCCCCCCCcccCHHHHHHHH----HHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc--ccccccccccccCC
Q 018543            5 DKYRPKTLDQVIVHQDIAQNLK----KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAG   78 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~~~~~l~----~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~--~~~~~~~~~~~~~~   78 (354)
                      +-|-|.   ++.+.+.....+.    .++..+.+.++++|||||||||++++.+++++......  .++++|....  ++
T Consensus        12 ~~~iP~---~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~--t~   86 (366)
T COG1474          12 EDYIPE---ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELR--TP   86 (366)
T ss_pred             CCCCcc---cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCC--CH
Confidence            345553   3666666555554    44455565569999999999999999999998765433  2455554332  11


Q ss_pred             CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh--
Q 018543           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK--  156 (354)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~--  156 (354)
                      .     .+-.. -...+. .....|.......+.+.+.+..        ....-||++||+|.|....++.|..++.-  
T Consensus        87 ~-----~i~~~-i~~~~~-~~p~~g~~~~~~~~~l~~~~~~--------~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~  151 (366)
T COG1474          87 Y-----QVLSK-ILNKLG-KVPLTGDSSLEILKRLYDNLSK--------KGKTVIVILDEVDALVDKDGEVLYSLLRAPG  151 (366)
T ss_pred             H-----HHHHH-HHHHcC-CCCCCCCchHHHHHHHHHHHHh--------cCCeEEEEEcchhhhccccchHHHHHHhhcc
Confidence            0     00000 000000 1111122221223333333222        24567999999999976655666666643  


Q ss_pred             -ccCceeEEEEecCCC---cccHHHhhhcc--eeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCH
Q 018543          157 -YSASCRLILCCNSSS---KVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAE---KSNRSL  225 (354)
Q Consensus       157 -~~~~~~~Il~~~~~~---~l~~~l~sR~~--~i~~~~~~~~~~~~~L~~~~~~~--~~~i~~~~l~~i~~---~s~gd~  225 (354)
                       ...++.+|+++|+..   .+.+.++|+..  .|.|+|++.+|+..+|..+++..  .-.+++++++.++.   ..+||+
T Consensus       152 ~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDA  231 (366)
T COG1474         152 ENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDA  231 (366)
T ss_pred             ccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccH
Confidence             333456777777764   67888888864  58899999999999999988642  33577888877764   567899


Q ss_pred             HHHHHHHHHHHhcC
Q 018543          226 RRAILSFETCRVQQ  239 (354)
Q Consensus       226 R~ai~~L~~~~~~~  239 (354)
                      |.|+.+|..++..+
T Consensus       232 R~aidilr~A~eiA  245 (366)
T COG1474         232 RKAIDILRRAGEIA  245 (366)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999876543

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.70  E-value=5.5e-16  Score=155.69  Aligned_cols=199  Identities=16%  Similarity=0.307  Sum_probs=138.2

Q ss_pred             CCcccCHHHHHHHHHHHhc---C----CCC--eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543           13 DQVIVHQDIAQNLKKLVTE---Q----DCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~---~----~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      ..++||+++++.+...+..   |    ..|  .++|+||+|+|||.+|+++|+.+++.....+.++...|.  .+     
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~--~~-----  638 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQ--EA-----  638 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhh--hh-----
Confidence            4678999999888887742   1    122  389999999999999999999987655444555554443  00     


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----  158 (354)
                         ...  ...+.-.+...|......+.+   .+..         .++.||+|||++.++++.++.|++++++..     
T Consensus       639 ---~~~--~~l~g~~~gyvg~~~~g~L~~---~v~~---------~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~  701 (852)
T TIGR03345       639 ---HTV--SRLKGSPPGYVGYGEGGVLTE---AVRR---------KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGE  701 (852)
T ss_pred             ---hhh--ccccCCCCCcccccccchHHH---HHHh---------CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCC
Confidence               000  000111111112111112222   2222         234899999999999999999999998753     


Q ss_pred             ------CceeEEEEecCCC-----------------------------cccHHHhhhcceeeecCCCHHHHHHHHHHHHH
Q 018543          159 ------ASCRLILCCNSSS-----------------------------KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK  203 (354)
Q Consensus       159 ------~~~~~Il~~~~~~-----------------------------~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~  203 (354)
                            .++.+|++||-..                             .+.|++.+||.+|.|.|++.+++.+++...+.
T Consensus       702 Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~  781 (852)
T TIGR03345       702 GREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLD  781 (852)
T ss_pred             CcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHH
Confidence                  5788898887311                             25678899999999999999999999977554


Q ss_pred             H-------c-C--CCCCHHHHHHHHHHcCC---CHHHHHHHHHHH
Q 018543          204 K-------E-G--LQLPSGFATRLAEKSNR---SLRRAILSFETC  235 (354)
Q Consensus       204 ~-------~-~--~~i~~~~l~~i~~~s~g---d~R~ai~~L~~~  235 (354)
                      .       . |  +.+++++++.|++.+.+   ++|.+.+.++..
T Consensus       782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~  826 (852)
T TIGR03345       782 RIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT  826 (852)
T ss_pred             HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence            2       1 4  46789999999999877   799888888754

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=99.70  E-value=1.5e-15  Score=137.91  Aligned_cols=186  Identities=20%  Similarity=0.361  Sum_probs=131.9

Q ss_pred             CCCCccc---CHHHHHHHHHHHhc-C-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccc
Q 018543           11 TLDQVIV---HQDIAQNLKKLVTE-Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (354)
Q Consensus        11 ~~~~~~g---~~~~~~~l~~~l~~-~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
                      +|++++.   +.-+......+.+. | ..++++||||.|+|||+|+++++++.....+...                   
T Consensus        85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~-------------------  145 (408)
T COG0593          85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNAR-------------------  145 (408)
T ss_pred             chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCce-------------------
Confidence            6777763   44455555555554 2 2344999999999999999999998755443210                   


Q ss_pred             ccccccCceeeeCCCCCCCcchhHHHHHHH--------HHHhcCCCCCCCCCCceEEEEeCCCcCCH--HHHHHHHHHHh
Q 018543           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIK--------EMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTME  155 (354)
Q Consensus        86 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~Ll~~le  155 (354)
                              ++.+..++       ...+++.        .+....        ...+++||+++.+..  ..+..|..++.
T Consensus       146 --------v~y~~se~-------f~~~~v~a~~~~~~~~Fk~~y--------~~dlllIDDiq~l~gk~~~qeefFh~FN  202 (408)
T COG0593         146 --------VVYLTSED-------FTNDFVKALRDNEMEKFKEKY--------SLDLLLIDDIQFLAGKERTQEEFFHTFN  202 (408)
T ss_pred             --------EEeccHHH-------HHHHHHHHHHhhhHHHHHHhh--------ccCeeeechHhHhcCChhHHHHHHHHHH
Confidence                    11111111       0111111        121111        237999999998753  45888888887


Q ss_pred             hccCce-eEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Q 018543          156 KYSASC-RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRR  227 (354)
Q Consensus       156 ~~~~~~-~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~  227 (354)
                      ...... .+|+++..+.    .+.+.++||+   .++.+.||+.+....+|...++..++.++++++.+++.....|+|.
T Consensus       203 ~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvRe  282 (408)
T COG0593         203 ALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRE  282 (408)
T ss_pred             HHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHH
Confidence            654443 5666666554    3668999996   5799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 018543          228 AILSFETCRVQ  238 (354)
Q Consensus       228 ai~~L~~~~~~  238 (354)
                      +...|+.+...
T Consensus       283 LegaL~~l~~~  293 (408)
T COG0593         283 LEGALNRLDAF  293 (408)
T ss_pred             HHHHHHHHHHH
Confidence            99888766544

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.70  E-value=1.6e-15  Score=132.03  Aligned_cols=104  Identities=25%  Similarity=0.292  Sum_probs=91.8

Q ss_pred             ceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC------------CCcccHHHhhhcceeeecCCCHHHHHHHH
Q 018543          131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS------------SSKVTEAIRSRCLNIRINSPTEEQIVKVL  198 (354)
Q Consensus       131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~L  198 (354)
                      +.|+||||+|.|+-++...|.+.||..- ...+|++||.            |+.++..+.+|..+|.-.|++.++++.++
T Consensus       292 pGVLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi  370 (450)
T COG1224         292 PGVLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII  370 (450)
T ss_pred             cceEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence            5699999999999999999999998743 2456677774            44799999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHH
Q 018543          199 EFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETC  235 (354)
Q Consensus       199 ~~~~~~~~~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~  235 (354)
                      +.++..+++.+++++++.++... ..++|-|+++|.-+
T Consensus       371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa  408 (450)
T COG1224         371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPA  408 (450)
T ss_pred             HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHH
Confidence            99999999999999999999975 46899999998843

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.70  E-value=1.4e-15  Score=140.23  Aligned_cols=192  Identities=19%  Similarity=0.268  Sum_probs=122.2

Q ss_pred             cCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543            7 YRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (354)
Q Consensus         7 yrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~   73 (354)
                      ..+.+|+|+.|.+..++.++..+..           | ..| .+||+||||||||++++++|+++..+   .+.+.+..+
T Consensus       139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~---fi~i~~s~l  215 (398)
T PTZ00454        139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT---FIRVVGSEF  215 (398)
T ss_pred             CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC---EEEEehHHH
Confidence            3445899999999999888887641           2 122 39999999999999999999975221   111111000


Q ss_pred             cccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC----------
Q 018543           74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----------  143 (354)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----------  143 (354)
                      .                         ..+-......+++++.....         ..+.||+|||+|.+.          
T Consensus       216 ~-------------------------~k~~ge~~~~lr~lf~~A~~---------~~P~ILfIDEID~i~~~r~~~~~~~  261 (398)
T PTZ00454        216 V-------------------------QKYLGEGPRMVRDVFRLARE---------NAPSIIFIDEVDSIATKRFDAQTGA  261 (398)
T ss_pred             H-------------------------HHhcchhHHHHHHHHHHHHh---------cCCeEEEEECHhhhccccccccCCc
Confidence            0                         00000111235555544332         234799999998762          


Q ss_pred             -HHHHHHHHHHH---hhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 018543          144 -REAQHSLRRTM---EKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (354)
Q Consensus       144 -~~~~~~Ll~~l---e~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l  214 (354)
                       ...+..+..++   +..  ..++.+|++||+++.+.+++.+  |+. .|+|++|+.++...+++.+..+.++.- +-.+
T Consensus       262 d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-dvd~  340 (398)
T PTZ00454        262 DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-EVDL  340 (398)
T ss_pred             cHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-ccCH
Confidence             23344444444   322  3467899999999999999886  653 599999999999999998887665542 2346


Q ss_pred             HHHHHHcCC-CHHHHHHHHHHHH
Q 018543          215 TRLAEKSNR-SLRRAILSFETCR  236 (354)
Q Consensus       215 ~~i~~~s~g-d~R~ai~~L~~~~  236 (354)
                      ..++..+.| +.+...++++.++
T Consensus       341 ~~la~~t~g~sgaDI~~l~~eA~  363 (398)
T PTZ00454        341 EDFVSRPEKISAADIAAICQEAG  363 (398)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHH
Confidence            677776655 3444444444443

>PRK14700 recombination factor protein RarA; Provisional

Probab=99.69  E-value=4.6e-16  Score=134.44  Aligned_cols=156  Identities=14%  Similarity=0.170  Sum_probs=114.9

Q ss_pred             ceeEEEEecC-CC-cccHHHhhhcceeeecCCCHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHH
Q 018543          160 SCRLILCCNS-SS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE------GLQLPSGFATRLAEKSNRSLRRAILS  231 (354)
Q Consensus       160 ~~~~Il~~~~-~~-~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~------~~~i~~~~l~~i~~~s~gd~R~ai~~  231 (354)
                      ...+|.+|+. |. .+.++|+|||+++.|.+++.+++..+|++.+..+      .+.+++++++.|++.++||.|.|+|.
T Consensus         8 ~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~   87 (300)
T PRK14700          8 KIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNL   87 (300)
T ss_pred             cEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHH
Confidence            3455554443 33 7999999999999999999999999999988742      36799999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHH
Q 018543          232 FETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKH  311 (354)
Q Consensus       232 L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~~~~  311 (354)
                      ||.++....   .+... .. .    .+.++.++.. ....+++..+.+|++++              +|+|+    .|+
T Consensus        88 LE~a~~~~~---~~~~~-~i-t----~~~~~~~~~~-~~~~yDk~gd~HYd~iS--------------Af~KS----iRG  139 (300)
T PRK14700         88 LERMFLIST---RGDEI-YL-N----KELFDQAVGE-TSRDFHREGKEFYEQLS--------------AFHKS----VRG  139 (300)
T ss_pred             HHHHHhhcc---ccCCC-cc-C----HHHHHHHHhH-HHhcccCCcchhHHHHH--------------HHHHH----hhc
Confidence            998663211   01110 01 1    1222332221 11233444456776554              68887    889


Q ss_pred             HHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543          312 EVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG  347 (354)
Q Consensus       312 ~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~  347 (354)
                      +..+++.+|..||..|++|+.    ||+|+|.++|+
T Consensus       140 SDpDAAlYyLArml~~GEDp~----~IaRRLii~As  171 (300)
T PRK14700        140 TDPDAAIFWLSVMLDNGVDPL----VIARRMLCIAS  171 (300)
T ss_pred             CCccHHHHHHHHHHHcCCCHH----HHHHHHHHHHH
Confidence            999999999999999999985    99999999986

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.5e-15  Score=140.37  Aligned_cols=184  Identities=19%  Similarity=0.283  Sum_probs=128.6

Q ss_pred             CCCCcccCHHHHHHHHHHHhc----------CCCCe--EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543           11 TLDQVIVHQDIAQNLKKLVTE----------QDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~----------~~~~~--~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~   78 (354)
                      +|.++-|.+.....|..++-.          |-.|.  +||+||||||||.+|+++|+++--+-   +.+.         
T Consensus       188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf---~~is---------  255 (802)
T KOG0733|consen  188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF---LSIS---------  255 (802)
T ss_pred             chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce---Eeec---------
Confidence            599999999888877776632          43333  99999999999999999999872211   1110         


Q ss_pred             CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-----------HH
Q 018543           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------AQ  147 (354)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-----------~~  147 (354)
                                  .+   ++. +...+.....+|++++......|         .|+||||+|.+.+.           ..
T Consensus       256 ------------Ap---eiv-SGvSGESEkkiRelF~~A~~~aP---------civFiDeIDAI~pkRe~aqreMErRiV  310 (802)
T KOG0733|consen  256 ------------AP---EIV-SGVSGESEKKIRELFDQAKSNAP---------CIVFIDEIDAITPKREEAQREMERRIV  310 (802)
T ss_pred             ------------ch---hhh-cccCcccHHHHHHHHHHHhccCC---------eEEEeecccccccchhhHHHHHHHHHH
Confidence                        01   111 11222333568888887666544         79999999999743           23


Q ss_pred             HHHHHHHhhcc------CceeEEEEecCCCcccHHHhhh--cc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018543          148 HSLRRTMEKYS------ASCRLILCCNSSSKVTEAIRSR--CL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (354)
Q Consensus       148 ~~Ll~~le~~~------~~~~~Il~~~~~~~l~~~l~sR--~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~  218 (354)
                      ..|+..|.+..      ..+.+|.+||.|+.+.++||+-  +. .|.+.-|+..+..++|+.+|+...+.- +-....||
T Consensus       311 aQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA  389 (802)
T KOG0733|consen  311 AQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLA  389 (802)
T ss_pred             HHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHH
Confidence            45777776543      3467888999999999999984  43 599999999999999999997544432 23477888


Q ss_pred             HHcCCCHHHHHHHH
Q 018543          219 EKSNRSLRRAILSF  232 (354)
Q Consensus       219 ~~s~gd~R~ai~~L  232 (354)
                      ..+.|-+..-+..|
T Consensus       390 ~lTPGfVGADL~AL  403 (802)
T KOG0733|consen  390 KLTPGFVGADLMAL  403 (802)
T ss_pred             hcCCCccchhHHHH
Confidence            88888666544443

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.68  E-value=1.1e-15  Score=154.68  Aligned_cols=204  Identities=17%  Similarity=0.281  Sum_probs=144.0

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   82 (354)
                      ++++.||..++.++|+++.++.+...+..+..++.+|+||||+|||++++.++..+...... ....+            
T Consensus       163 l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p-~~l~~------------  229 (852)
T TIGR03346       163 LTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVP-ESLKN------------  229 (852)
T ss_pred             HHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCc-hhhcC------------
Confidence            56789999999999999998888888877777779999999999999999999976332110 00000            


Q ss_pred             cccccccccCceeeeCCC------CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--------HHHH
Q 018543           83 DLELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQH  148 (354)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~  148 (354)
                               ...+.+...      .+.......++.+++.+...        .++.|+||||+|.+..        ++.+
T Consensus       230 ---------~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~--------~~~~ILfIDEih~l~~~g~~~~~~d~~~  292 (852)
T TIGR03346       230 ---------KRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKS--------EGQIILFIDELHTLVGAGKAEGAMDAGN  292 (852)
T ss_pred             ---------CeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhc--------CCCeEEEeccHHHhhcCCCCcchhHHHH
Confidence                     111111111      11111112355555554332        2347999999998852        3456


Q ss_pred             HHHHHHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 018543          149 SLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE  219 (354)
Q Consensus       149 ~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~  219 (354)
                      .|...++.  ....+|.+|+..+     ...+++.+||+.|.++.|+.++...+|.....+    .++.++++++..++.
T Consensus       293 ~Lk~~l~~--g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~  370 (852)
T TIGR03346       293 MLKPALAR--GELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAAT  370 (852)
T ss_pred             Hhchhhhc--CceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHH
Confidence            66655543  4567777777653     478999999999999999999999999876554    367789999999998


Q ss_pred             HcCC---C---HHHHHHHHHHHHhc
Q 018543          220 KSNR---S---LRRAILSFETCRVQ  238 (354)
Q Consensus       220 ~s~g---d---~R~ai~~L~~~~~~  238 (354)
                      .+.+   |   +.+|+.+|+.+|+.
T Consensus       371 ls~~yi~~r~lPdkAidlld~a~a~  395 (852)
T TIGR03346       371 LSHRYITDRFLPDKAIDLIDEAAAR  395 (852)
T ss_pred             hccccccccCCchHHHHHHHHHHHH
Confidence            8764   3   77899999988754

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR01128 holA DNA polymerase III, delta subunit

Probab=99.68  E-value=1.4e-14  Score=130.71  Aligned_cols=211  Identities=15%  Similarity=0.163  Sum_probs=159.8

Q ss_pred             CCCceEEEEeCCCcCC-HHHHHHHHHHHhhccCceeEEEEecCCCc---ccHHHh--hhcceeeecCCCHHHHHHHHHHH
Q 018543          128 KRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSK---VTEAIR--SRCLNIRINSPTEEQIVKVLEFI  201 (354)
Q Consensus       128 ~~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~~---l~~~l~--sR~~~i~~~~~~~~~~~~~L~~~  201 (354)
                      .++.++++|++++.+. ....+.|.+.++++++++.+|++++..+.   +...+.  ++|.++.|.+++..++..++...
T Consensus        44 f~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~  123 (302)
T TIGR01128        44 FSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQAR  123 (302)
T ss_pred             ccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHH
Confidence            3567999999999876 46678999999999888888888876542   222333  49999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHH
Q 018543          202 AKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ--QYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVR  277 (354)
Q Consensus       202 ~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~--~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  277 (354)
                      +.+.|+.+++++++.+++.++||++.+.+.++.++..  +..++.++  .+.....+..+++++++++.    ++...+.
T Consensus       124 ~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~----~~~~~a~  199 (302)
T TIGR01128       124 LKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLE----GKAARAL  199 (302)
T ss_pred             HHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHC----CCHHHHH
Confidence            9999999999999999999999999999999988776  23454433  22222344557788888887    5556666


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHH------------------------------------hCCHHHHHHHHHHHHHHh
Q 018543          278 GKLYELLLNCVPPVVVLKRLLYELLK------------------------------------RLDAEIKHEVCHWAAYYE  321 (354)
Q Consensus       278 ~~~~~l~~~~~~~~~il~~l~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~  321 (354)
                      ..+..++..+.+|..++..+...+..                                    .++.+....++..+.+.+
T Consensus       200 ~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d  279 (302)
T TIGR01128       200 RILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQELAEAD  279 (302)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            77777778888887776654443322                                    233344556788888888


Q ss_pred             hHhhC--CCChhHhHHHHHHHHH
Q 018543          322 HKMRR--GNKAIFHLEAFVAKFM  342 (354)
Q Consensus       322 ~~l~~--~~~~~l~l~~~i~~~~  342 (354)
                      ..++.  +.++.+.||.++.+++
T Consensus       280 ~~~K~~~~~~~~~~le~~i~~~~  302 (302)
T TIGR01128       280 LQLKGTGGGDPWLALERLLLKLA  302 (302)
T ss_pred             HHHhCcCCCCHHHHHHHHHHHhC
Confidence            88883  5556888888887763

subunit around DNA forming a DNA sliding clamp.

>CHL00176 ftsH cell division protein; Validated

Probab=99.68  E-value=4.1e-15  Score=144.36  Aligned_cols=187  Identities=18%  Similarity=0.290  Sum_probs=121.7

Q ss_pred             CCCCCcccCHHHHHHHHHHHhc-----------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~   77 (354)
                      .+|+|+.|.+++++.+...+..           ...| ++||+||||||||++|+++|++...+   .+.+++..+.   
T Consensus       180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p---~i~is~s~f~---  253 (638)
T CHL00176        180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP---FFSISGSEFV---  253 (638)
T ss_pred             CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eeeccHHHHH---
Confidence            5899999999988877776531           1223 49999999999999999999976221   1111111111   


Q ss_pred             CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-----------HHH
Q 018543           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------REA  146 (354)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------~~~  146 (354)
                                        +.   ..+ .....+++++.....         ..+.||+|||+|.+.           .+.
T Consensus       254 ------------------~~---~~g-~~~~~vr~lF~~A~~---------~~P~ILfIDEID~l~~~r~~~~~~~~~e~  302 (638)
T CHL00176        254 ------------------EM---FVG-VGAARVRDLFKKAKE---------NSPCIVFIDEIDAVGRQRGAGIGGGNDER  302 (638)
T ss_pred             ------------------HH---hhh-hhHHHHHHHHHHHhc---------CCCcEEEEecchhhhhcccCCCCCCcHHH
Confidence                              00   001 011235555544332         234799999999873           223


Q ss_pred             HHH---HHHHHhhc--cCceeEEEEecCCCcccHHHhhh--c-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018543          147 QHS---LRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (354)
Q Consensus       147 ~~~---Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~  218 (354)
                      +..   |+..|+..  ..++.+|.+||+++.+.+++.++  + ..+.|++|+.++...+|+.++....+ .++..+..++
T Consensus       303 ~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA  381 (638)
T CHL00176        303 EQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIA  381 (638)
T ss_pred             HHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHH
Confidence            333   44444432  24567888889989999999874  4 47999999999999999998876433 3456788899


Q ss_pred             HHcCC-CHHHHHHHHHH
Q 018543          219 EKSNR-SLRRAILSFET  234 (354)
Q Consensus       219 ~~s~g-d~R~ai~~L~~  234 (354)
                      +.+.| +.+..-+++..
T Consensus       382 ~~t~G~sgaDL~~lvne  398 (638)
T CHL00176        382 RRTPGFSGADLANLLNE  398 (638)
T ss_pred             hcCCCCCHHHHHHHHHH
Confidence            98877 44444444443

>PRK05574 holA DNA polymerase III subunit delta; Reviewed

Probab=99.68  E-value=6e-14  Score=128.68  Aligned_cols=224  Identities=17%  Similarity=0.187  Sum_probs=159.9

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHH----HHHHHHHhhccCc--eeEEEEecCCC---cc---cHHH
Q 018543          110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQ----HSLRRTMEKYSAS--CRLILCCNSSS---KV---TEAI  177 (354)
Q Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~----~~Ll~~le~~~~~--~~~Il~~~~~~---~l---~~~l  177 (354)
                      +.+++..+. +.|+    .++.++|+|++++.+.....    ..+..++ ++++.  ..+++.++..+   ++   .+++
T Consensus        61 ~~~l~~~~~-t~~l----F~~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~  134 (340)
T PRK05574         61 WDDVLEACQ-SLPL----FSDRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKAL  134 (340)
T ss_pred             HHHHHHHhh-ccCc----cccCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHH
Confidence            445554433 3333    36779999999998865422    3333444 33433  34444444433   23   6788


Q ss_pred             hhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCCCC--CCCCCCH
Q 018543          178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ--YPFKDNQ--AIPAMDW  253 (354)
Q Consensus       178 ~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~--~~~~~~~--~~~~~~~  253 (354)
                      .++|.++.|++++..++..++...+.+.|+.+++++++.+++.++||++.+.+.++.++...  ..++.++  .+.....
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~  214 (340)
T PRK05574        135 KKKAVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSA  214 (340)
T ss_pred             HhCceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhh
Confidence            88999999999999999999999999999999999999999999999999999999887653  2355444  2333344


Q ss_pred             HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-------------------------------
Q 018543          254 EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELL-------------------------------  302 (354)
Q Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~-------------------------------  302 (354)
                      +..++++++.++.    ++...+...+..++.++.+|..++..+..++.                               
T Consensus       215 ~~~~f~l~dai~~----~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~  290 (340)
T PRK05574        215 RFDVFDLVDAILA----GKIKRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKL  290 (340)
T ss_pred             cCCHHHHHHHHHC----CCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHH
Confidence            5677888888887    45556667777777778888777664443322                               


Q ss_pred             -----HhCCHHHHHHHHHHHHHHhhHhhCCC--ChhHhHHHHHHHHHH
Q 018543          303 -----KRLDAEIKHEVCHWAAYYEHKMRRGN--KAIFHLEAFVAKFMS  343 (354)
Q Consensus       303 -----~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~l~l~~~i~~~~~  343 (354)
                           +.++.+....++..+.+.+..++.|.  ++.+.+|.|+.+++.
T Consensus       291 ~~~~~~~~s~~~L~~~l~~L~~~d~~iK~~~~~~~~~~le~~ii~l~~  338 (340)
T PRK05574        291 ALRALQRLSLKQLKQAIQLLAETDYQIKTGYGGDKWLELELLLLKLAG  338 (340)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Confidence                 13344455678888889999999885  678889999988764

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.68  E-value=2.5e-15  Score=139.17  Aligned_cols=177  Identities=21%  Similarity=0.301  Sum_probs=116.0

Q ss_pred             CCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543            9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (354)
Q Consensus         9 P~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~   75 (354)
                      ..+++++.|.+..++.+...+..           | ..| ++||+||||||||++|+++|+++..+   .+.+.+..+. 
T Consensus       127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~---~i~v~~~~l~-  202 (389)
T PRK03992        127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT---FIRVVGSELV-  202 (389)
T ss_pred             CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC---EEEeehHHHh-
Confidence            34788999999999888887632           1 223 39999999999999999999976221   1111111000 


Q ss_pred             cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-----------CH
Q 018543           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-----------SR  144 (354)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-----------~~  144 (354)
                                             . .+.......+++++.....         ..+.||+|||+|.+           +.
T Consensus       203 -----------------------~-~~~g~~~~~i~~~f~~a~~---------~~p~IlfiDEiD~l~~~r~~~~~~~~~  249 (389)
T PRK03992        203 -----------------------Q-KFIGEGARLVRELFELARE---------KAPSIIFIDEIDAIAAKRTDSGTSGDR  249 (389)
T ss_pred             -----------------------H-hhccchHHHHHHHHHHHHh---------cCCeEEEEechhhhhcccccCCCCccH
Confidence                                   0 0000111234555543332         23479999999987           24


Q ss_pred             HHHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 018543          145 EAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR  216 (354)
Q Consensus       145 ~~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~  216 (354)
                      +.+..+...+.+.     ..++.+|++||.++.+.+++.+  |+. .|+|++|+.++..++++.++....+.- +..+..
T Consensus       250 ~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~  328 (389)
T PRK03992        250 EVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEE  328 (389)
T ss_pred             HHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHH
Confidence            4555666666432     2467899999999999999986  664 699999999999999998776444321 234677


Q ss_pred             HHHHcCC
Q 018543          217 LAEKSNR  223 (354)
Q Consensus       217 i~~~s~g  223 (354)
                      ++..+.|
T Consensus       329 la~~t~g  335 (389)
T PRK03992        329 LAELTEG  335 (389)
T ss_pred             HHHHcCC
Confidence            7776655

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.67  E-value=2.6e-15  Score=151.48  Aligned_cols=185  Identities=21%  Similarity=0.351  Sum_probs=125.2

Q ss_pred             CCcccCHHHHHHHHHHHhc--------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543           13 DQVIVHQDIAQNLKKLVTE--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~--------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      +.++||+++++.+...+..        +++. .++|+||+|+|||++|+++|+.+++.....+.++...|.         
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~---------  579 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYM---------  579 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcc---------
Confidence            4688999999999888753        1222 389999999999999999999998876555555544433         


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc------
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------  157 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~------  157 (354)
                       +.....  ..+.-.+...+...   ...+...+..         .+++||++||+|.++++.++.|+++|++.      
T Consensus       580 -~~~~~~--~l~g~~~gyvg~~~---~~~l~~~~~~---------~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~  644 (821)
T CHL00095        580 -EKHTVS--KLIGSPPGYVGYNE---GGQLTEAVRK---------KPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSK  644 (821)
T ss_pred             -ccccHH--HhcCCCCcccCcCc---cchHHHHHHh---------CCCeEEEECChhhCCHHHHHHHHHHhccCceecCC
Confidence             000000  00111111111111   1122222222         23489999999999999999999999874      


Q ss_pred             -----cCceeEEEEecCCCc-------------------------------------ccHHHhhhc-ceeeecCCCHHHH
Q 018543          158 -----SASCRLILCCNSSSK-------------------------------------VTEAIRSRC-LNIRINSPTEEQI  194 (354)
Q Consensus       158 -----~~~~~~Il~~~~~~~-------------------------------------l~~~l~sR~-~~i~~~~~~~~~~  194 (354)
                           -.++.||++||-...                                     +.|.+.+|+ .++.|.|++.+++
T Consensus       645 g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l  724 (821)
T CHL00095        645 GRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDV  724 (821)
T ss_pred             CcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHH
Confidence                 256888888874211                                     235678898 7899999999999


Q ss_pred             HHHHHHHHHH-------cC--CCCCHHHHHHHHHHc
Q 018543          195 VKVLEFIAKK-------EG--LQLPSGFATRLAEKS  221 (354)
Q Consensus       195 ~~~L~~~~~~-------~~--~~i~~~~l~~i~~~s  221 (354)
                      .+++...+.+       .|  +.+++++.+.|++..
T Consensus       725 ~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~  760 (821)
T CHL00095        725 WEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG  760 (821)
T ss_pred             HHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence            9998776543       23  467899999999963

>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]

Probab=99.66  E-value=5.7e-16  Score=153.00  Aligned_cols=202  Identities=20%  Similarity=0.349  Sum_probs=147.2

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcC------------C--CCe--EEEeCCCCCcHHHHHHHHHHHhcCCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ------------D--CPH--LLFYGPPGSGKKTLIMALLRQVFGPGAE   64 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~------------~--~~~--~ll~Gp~G~GKTtla~~la~~l~~~~~~   64 (354)
                      +.|.++|+|++..++.|+......+..|++..            .  ..+  ++++||||+|||+.+++.|.++. .   
T Consensus       308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g-~---  383 (871)
T KOG1968|consen  308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELG-F---  383 (871)
T ss_pred             cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcc-c---
Confidence            47999999999999999988877888887642            1  112  58999999999999999998751 1   


Q ss_pred             ccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC---------CCCCCCceEEE
Q 018543           65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID---------TKGKRGFKVLV  135 (354)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~~vii  135 (354)
                                                  ..++.++++.+...  .+.+.+..+.....+.         ........||+
T Consensus       384 ----------------------------~v~E~Nas~~RSk~--~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil  433 (871)
T KOG1968|consen  384 ----------------------------KVVEKNASDVRSKK--ELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLIL  433 (871)
T ss_pred             ----------------------------ceeecCcccccccc--HHHhhhhccccccchhhhhcccccccccccceeEEE
Confidence                                        12444444443221  1112121211111110         01123445999


Q ss_pred             EeCCCcCCH---HHHHHHHHHHhhccCceeEEEEecCCCc-ccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543          136 LNEVDKLSR---EAQHSLRRTMEKYSASCRLILCCNSSSK-VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (354)
Q Consensus       136 iDE~d~l~~---~~~~~Ll~~le~~~~~~~~Il~~~~~~~-l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~  211 (354)
                      +||+|.+..   .....+-.+.++  ...++|++||+... -..++.+-|..++|+.|+.+.+...+..++..+++.+++
T Consensus       434 ~devD~~~~~dRg~v~~l~~l~~k--s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~  511 (871)
T KOG1968|consen  434 MDEVDGMFGEDRGGVSKLSSLCKK--SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISD  511 (871)
T ss_pred             EeccccccchhhhhHHHHHHHHHh--ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCc
Confidence            999999976   344555555563  45789999999874 344677778999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 018543          212 GFATRLAEKSNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       212 ~~l~~i~~~s~gd~R~ai~~L~~~~~~  238 (354)
                      +.++.++..++||+|..++.|+.++..
T Consensus       512 ~~l~~~s~~~~~DiR~~i~~lq~~~~~  538 (871)
T KOG1968|consen  512 DVLEEISKLSGGDIRQIIMQLQFWSLS  538 (871)
T ss_pred             HHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence            999999999999999999999988544

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.66  E-value=1.7e-15  Score=142.41  Aligned_cols=180  Identities=16%  Similarity=0.249  Sum_probs=116.4

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   70 (354)
                      .+++.+.+|+++.|.+..++.++..+..           | ..| .+|||||||||||++++++|+++..+....  ...
T Consensus       173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~--~~~  250 (512)
T TIGR03689       173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAE--TGD  250 (512)
T ss_pred             eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccc--cCC
Confidence            4677888999999999999888887641           2 223 399999999999999999999873321100  000


Q ss_pred             ccccccCCCccccccccccccCceeeeCCCC----CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--
Q 018543           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSD----AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--  144 (354)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--  144 (354)
                      .                    ..++.+..++    +.......++.+++.......     .+.+.||||||+|.+..  
T Consensus       251 ~--------------------~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~-----~g~p~IIfIDEiD~L~~~R  305 (512)
T TIGR03689       251 K--------------------SYFLNIKGPELLNKYVGETERQIRLIFQRAREKAS-----DGRPVIVFFDEMDSIFRTR  305 (512)
T ss_pred             c--------------------eeEEeccchhhcccccchHHHHHHHHHHHHHHHhh-----cCCCceEEEehhhhhhccc
Confidence            0                    0001111110    001111234555544333221     23568999999998732  


Q ss_pred             ------H----HHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCC
Q 018543          145 ------E----AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQL  209 (354)
Q Consensus       145 ------~----~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i  209 (354)
                            +    ..+.|+..|+...  .++.+|.+||+++.+.+++.+  |+. .|+|++|+.++...+++.++.. .+.+
T Consensus       306 ~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l  384 (512)
T TIGR03689       306 GSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPL  384 (512)
T ss_pred             CCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCc
Confidence                  1    2345666665432  467788899999999999998  764 5999999999999999988753 4455


Q ss_pred             CH
Q 018543          210 PS  211 (354)
Q Consensus       210 ~~  211 (354)
                      ++
T Consensus       385 ~~  386 (512)
T TIGR03689       385 DA  386 (512)
T ss_pred             hH
Confidence            33

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.66  E-value=5.2e-15  Score=139.36  Aligned_cols=177  Identities=16%  Similarity=0.157  Sum_probs=119.0

Q ss_pred             CCCCCcccCHHHHHHHHHHHh--------cC-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543           10 KTLDQVIVHQDIAQNLKKLVT--------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~--------~~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
                      .+|+++.|.+.+++.++....        .| ..|. +||+||||||||++|+++|+++..+   .+.+++..+      
T Consensus       225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~---~~~l~~~~l------  295 (489)
T CHL00195        225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP---LLRLDVGKL------  295 (489)
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC---EEEEEhHHh------
Confidence            579999999888877765321        13 2333 9999999999999999999976211   111111000      


Q ss_pred             ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH------------HHH
Q 018543           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------EAQ  147 (354)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------------~~~  147 (354)
                                        .....| .....++++++.....         .+.||+|||+|.+..            ...
T Consensus       296 ------------------~~~~vG-ese~~l~~~f~~A~~~---------~P~IL~IDEID~~~~~~~~~~d~~~~~rvl  347 (489)
T CHL00195        296 ------------------FGGIVG-ESESRMRQMIRIAEAL---------SPCILWIDEIDKAFSNSESKGDSGTTNRVL  347 (489)
T ss_pred             ------------------cccccC-hHHHHHHHHHHHHHhc---------CCcEEEehhhhhhhccccCCCCchHHHHHH
Confidence                              000011 1123466666544332         347999999986632            123


Q ss_pred             HHHHHHHhhccCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCC
Q 018543          148 HSLRRTMEKYSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQ-LPSGFATRLAEKSNR  223 (354)
Q Consensus       148 ~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~-i~~~~l~~i~~~s~g  223 (354)
                      ..|+..|.+....+.+|.+||+++.+++++.+  |+. .+.++.|+.++...+++..+.+.+.. .++..++.+++.+.|
T Consensus       348 ~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~G  427 (489)
T CHL00195        348 ATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNK  427 (489)
T ss_pred             HHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCC
Confidence            45667776665667788899999999999986  674 69999999999999999988775432 335567888887665

>PRK08485 DNA polymerase III subunit delta'; Validated

Probab=99.66  E-value=6.5e-16  Score=125.42  Aligned_cols=119  Identities=18%  Similarity=0.162  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce----
Q 018543          108 YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN----  183 (354)
Q Consensus       108 ~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~----  183 (354)
                      ..+|++++.....+.       ..+ +||+++|.|+.+++|+|++++|+||.++.||++|+++.++++|++|||+.    
T Consensus        40 d~iReii~~~~~~~~-------~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~  111 (206)
T PRK08485         40 EDAKEVIAEAYIAES-------EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRK  111 (206)
T ss_pred             HHHHHHHHHHhhCCC-------CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheecccc
Confidence            457887776544321       224 46789999999999999999999999999999999999999999999986    


Q ss_pred             ---------eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543          184 ---------IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC  235 (354)
Q Consensus       184 ---------i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~  235 (354)
                               +.|++++.+++...|++ ..++++...+++++.|++.+.|.+|.++.+.+..
T Consensus       112 ~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~  171 (206)
T PRK08485        112 QKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEE  171 (206)
T ss_pred             ccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHH
Confidence                     77899999999999998 6788888889999999999999999998776644

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.64  E-value=3.5e-15  Score=150.40  Aligned_cols=203  Identities=15%  Similarity=0.240  Sum_probs=142.2

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      +++-||.++++++|+++.++.+...+.....++++|+||||||||++++.+|..+...... ....              
T Consensus       169 ~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp-~~l~--------------  233 (857)
T PRK10865        169 TERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP-EGLK--------------  233 (857)
T ss_pred             HHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCc-hhhC--------------
Confidence            5678999999999999988888888877777789999999999999999999976432110 0000              


Q ss_pred             ccccccccCceeeeCCCC------CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--------HHHHH
Q 018543           84 LELTTLSSANHVELSPSD------AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHS  149 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~~  149 (354)
                             ....+.+....      +.......++.+++++...        ..+.|+||||+|.+..        ++++.
T Consensus       234 -------~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~--------~~~~ILfIDEih~l~~~~~~~~~~d~~~~  298 (857)
T PRK10865        234 -------GRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ--------EGNVILFIDELHTMVGAGKADGAMDAGNM  298 (857)
T ss_pred             -------CCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHc--------CCCeEEEEecHHHhccCCCCccchhHHHH
Confidence                   01111211111      1111112455555554432        2347999999998853        35777


Q ss_pred             HHHHHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHH
Q 018543          150 LRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEK  220 (354)
Q Consensus       150 Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~  220 (354)
                      |...++.  +...+|.+|+..+     ...+++.+||+.|.+..|+.++...+|+....+    .++.++++++...+..
T Consensus       299 lkp~l~~--g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~l  376 (857)
T PRK10865        299 LKPALAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATL  376 (857)
T ss_pred             hcchhhc--CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHH
Confidence            7777764  4567777777665     478999999999999999999999999876643    3578889998887776


Q ss_pred             cCC------CHHHHHHHHHHHHhc
Q 018543          221 SNR------SLRRAILSFETCRVQ  238 (354)
Q Consensus       221 s~g------d~R~ai~~L~~~~~~  238 (354)
                      +.+      -..+|+.+++.++..
T Consensus       377 s~ry~~~~~~pdkAi~LiD~aaa~  400 (857)
T PRK10865        377 SHRYIADRQLPDKAIDLIDEAASS  400 (857)
T ss_pred             hhccccCCCCChHHHHHHHHHhcc
Confidence            543      355788888877754

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.64  E-value=5.6e-15  Score=149.10  Aligned_cols=201  Identities=15%  Similarity=0.232  Sum_probs=141.3

Q ss_pred             cccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543            5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
                      ++-++..++.++|.++.++.+..++.....++++|+||||||||++++.+|..+..........+               
T Consensus       171 ~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~---------------  235 (821)
T CHL00095        171 KEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILED---------------  235 (821)
T ss_pred             HHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC---------------
Confidence            33456678999999999999999998777778999999999999999999998743221110000               


Q ss_pred             cccccccCceeeeCCC------CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--------HHHHHH
Q 018543           85 ELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHSL  150 (354)
Q Consensus        85 ~~~~~~~~~~i~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~~L  150 (354)
                             ...+.++..      .+.......++.+++++...         ++.|+||||+|.+..        ++.+.|
T Consensus       236 -------~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~---------~~~ILfiDEih~l~~~g~~~g~~~~a~lL  299 (821)
T CHL00095        236 -------KLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQEN---------NNIILVIDEVHTLIGAGAAEGAIDAANIL  299 (821)
T ss_pred             -------CeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhc---------CCeEEEEecHHHHhcCCCCCCcccHHHHh
Confidence                   111222211      11111122455666555332         336999999987742        345666


Q ss_pred             HHHHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHc
Q 018543          151 RRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKS  221 (354)
Q Consensus       151 l~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~s  221 (354)
                      ...+..  ....+|.+|+..+     ...+++.+||+.+.++.|+.++...+++.....    .++.++++++..++..+
T Consensus       300 kp~l~r--g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls  377 (821)
T CHL00095        300 KPALAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLS  377 (821)
T ss_pred             HHHHhC--CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence            666664  4577777777653     467899999999999999999998888765432    46779999999999988


Q ss_pred             CC---C---HHHHHHHHHHHHhc
Q 018543          222 NR---S---LRRAILSFETCRVQ  238 (354)
Q Consensus       222 ~g---d---~R~ai~~L~~~~~~  238 (354)
                      .|   |   +++|+.+|+.++..
T Consensus       378 ~~yi~~r~lPdkaidlld~a~a~  400 (821)
T CHL00095        378 DQYIADRFLPDKAIDLLDEAGSR  400 (821)
T ss_pred             hccCccccCchHHHHHHHHHHHH
Confidence            75   3   77899999987754

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=5e-15  Score=134.99  Aligned_cols=176  Identities=17%  Similarity=0.248  Sum_probs=119.0

Q ss_pred             CCCCCCcccCHHHHHHHHHHHh-----------cCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543            9 PKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus         9 P~~~~~~~g~~~~~~~l~~~l~-----------~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      -.+|+|+.|-+++++.|...++           .|++|. +||+||||+|||.+||++|++...   ......|.+|.  
T Consensus       300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V---PFF~~sGSEFd--  374 (752)
T KOG0734|consen  300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV---PFFYASGSEFD--  374 (752)
T ss_pred             ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC---CeEeccccchh--
Confidence            3579999999999998888774           378887 999999999999999999986521   11111222111  


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-----------HH
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE  145 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------~~  145 (354)
                                         ++    +-......+|+++.......         +.||||||+|...           ..
T Consensus       375 -------------------Em----~VGvGArRVRdLF~aAk~~A---------PcIIFIDEiDavG~kR~~~~~~y~kq  422 (752)
T KOG0734|consen  375 -------------------EM----FVGVGARRVRDLFAAAKARA---------PCIIFIDEIDAVGGKRNPSDQHYAKQ  422 (752)
T ss_pred             -------------------hh----hhcccHHHHHHHHHHHHhcC---------CeEEEEechhhhcccCCccHHHHHHH
Confidence                               00    01112245888887655433         4899999999873           12


Q ss_pred             HHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 018543          146 AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRLAE  219 (354)
Q Consensus       146 ~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~-~l~~i~~  219 (354)
                      ..|.|+--|+.+.  ..+++|.+||-++.+.+++.+  |+ .+|..+.|+..-..+||+.++.+  +.++++ ....||+
T Consensus       423 TlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiAR  500 (752)
T KOG0734|consen  423 TLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIAR  500 (752)
T ss_pred             HHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhcc
Confidence            3344555554443  456677788899999999987  44 36999999999999999998864  433322 2455566


Q ss_pred             HcCC
Q 018543          220 KSNR  223 (354)
Q Consensus       220 ~s~g  223 (354)
                      -+.|
T Consensus       501 GT~G  504 (752)
T KOG0734|consen  501 GTPG  504 (752)
T ss_pred             CCCC
Confidence            4444

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.63  E-value=7.9e-15  Score=146.81  Aligned_cols=178  Identities=18%  Similarity=0.253  Sum_probs=120.8

Q ss_pred             CCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543            9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (354)
Q Consensus         9 P~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~   75 (354)
                      ..+|+++.|.+.+++.|+..+..           | +.|. +|||||||||||++|+++|+++..+   .+.+.+..   
T Consensus       449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~---fi~v~~~~---  522 (733)
T TIGR01243       449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN---FIAVRGPE---  522 (733)
T ss_pred             ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC---EEEEehHH---
Confidence            34789999999999988887641           2 2333 9999999999999999999975211   11111100   


Q ss_pred             cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----------
Q 018543           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------  144 (354)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------  144 (354)
                                           +. +.+-......++++++.....         .+.||||||+|.+.+           
T Consensus       523 ---------------------l~-~~~vGese~~i~~~f~~A~~~---------~p~iifiDEid~l~~~r~~~~~~~~~  571 (733)
T TIGR01243       523 ---------------------IL-SKWVGESEKAIREIFRKARQA---------APAIIFFDEIDAIAPARGARFDTSVT  571 (733)
T ss_pred             ---------------------Hh-hcccCcHHHHHHHHHHHHHhc---------CCEEEEEEChhhhhccCCCCCCccHH
Confidence                                 00 001111123466666654443         348999999988731           


Q ss_pred             -HHHHHHHHHHhh--ccCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 018543          145 -EAQHSLRRTMEK--YSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRL  217 (354)
Q Consensus       145 -~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~-~~l~~i  217 (354)
                       ...+.|+..|+.  ...++.+|.+||.++.+.+++.+  ||. .++|++|+.++...+++....  +..+++ ..++.+
T Consensus       572 ~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~--~~~~~~~~~l~~l  649 (733)
T TIGR01243       572 DRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR--SMPLAEDVDLEEL  649 (733)
T ss_pred             HHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc--CCCCCccCCHHHH
Confidence             244567777753  34567888899999999999986  885 699999999999999986654  344433 347888


Q ss_pred             HHHcCCCH
Q 018543          218 AEKSNRSL  225 (354)
Q Consensus       218 ~~~s~gd~  225 (354)
                      ++.+.|--
T Consensus       650 a~~t~g~s  657 (733)
T TIGR01243       650 AEMTEGYT  657 (733)
T ss_pred             HHHcCCCC
Confidence            88777643

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=7.1e-15  Score=142.41  Aligned_cols=185  Identities=20%  Similarity=0.381  Sum_probs=131.7

Q ss_pred             CCcccCHHHHHHHHHHHhc--------C-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543           13 DQVIVHQDIAQNLKKLVTE--------Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~--------~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      ..++||++++..+...++.        + ....++|.||.|+|||.+|+++|..+++.....+.+|..+|.         
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~---------  561 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYM---------  561 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHH---------
Confidence            3579999999999988863        1 222499999999999999999999999988888888887775         


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----  158 (354)
                       +-.+++.  .+.-.|.-.|+..+..+.+.+   .         ..++.||++||++..+++..|.|+++|++..     
T Consensus       562 -EkHsVSr--LIGaPPGYVGyeeGG~LTEaV---R---------r~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~  626 (786)
T COG0542         562 -EKHSVSR--LIGAPPGYVGYEEGGQLTEAV---R---------RKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQ  626 (786)
T ss_pred             -HHHHHHH--HhCCCCCCceeccccchhHhh---h---------cCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCC
Confidence             1111111  122222222222222222222   1         1346899999999999999999999998642     


Q ss_pred             ------CceeEEEEecCCC----------------------------cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHH
Q 018543          159 ------ASCRLILCCNSSS----------------------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAK  203 (354)
Q Consensus       159 ------~~~~~Il~~~~~~----------------------------~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~  203 (354)
                            .++.+|+|||--+                            .+.|.+..|.. +|.|.+++.+.+.+++...+.
T Consensus       627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~  706 (786)
T COG0542         627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLN  706 (786)
T ss_pred             CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHH
Confidence                  4677888888321                            14466677776 899999999999988876443


Q ss_pred             -------HcCC--CCCHHHHHHHHHHc
Q 018543          204 -------KEGL--QLPSGFATRLAEKS  221 (354)
Q Consensus       204 -------~~~~--~i~~~~l~~i~~~s  221 (354)
                             +.++  .+++++.++|++.+
T Consensus       707 ~l~~~L~~~~i~l~~s~~a~~~l~~~g  733 (786)
T COG0542         707 RLAKRLAERGITLELSDEAKDFLAEKG  733 (786)
T ss_pred             HHHHHHHhCCceEEECHHHHHHHHHhc
Confidence                   2344  57899999999965

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.63  E-value=6.9e-15  Score=145.20  Aligned_cols=204  Identities=15%  Similarity=0.237  Sum_probs=134.1

Q ss_pred             CCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543            8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (354)
Q Consensus         8 rP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
                      +--.++.++|.+..++.+...+.....++++|+||||+|||++++.++..+...+......++..+.         ....
T Consensus       181 ~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~---------l~~~  251 (758)
T PRK11034        181 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS---------LDIG  251 (758)
T ss_pred             HcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe---------ccHH
Confidence            3446778999988888888888776667799999999999999999998764332111111111111         0000


Q ss_pred             ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---------HHHHHHHHHHHhhcc
Q 018543           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRRTMEKYS  158 (354)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~~~Ll~~le~~~  158 (354)
                      .+       +....+.......++.+++.+...         ++.|+||||+|.+-         .+..+.|...++.  
T Consensus       252 ~l-------laG~~~~Ge~e~rl~~l~~~l~~~---------~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--  313 (758)
T PRK11034        252 SL-------LAGTKYRGDFEKRFKALLKQLEQD---------TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--  313 (758)
T ss_pred             HH-------hcccchhhhHHHHHHHHHHHHHhc---------CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--
Confidence            00       000111111112345555544332         23699999999771         2234445555554  


Q ss_pred             CceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Q 018543          159 ASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNRS-----  224 (354)
Q Consensus       159 ~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~s~gd-----  224 (354)
                      ....+|.+||..+     ...+++.+|++.|.+++|+.++...+|+.+..+    .++.++++++..++..+..-     
T Consensus       314 g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~  393 (758)
T PRK11034        314 GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH  393 (758)
T ss_pred             CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCcc
Confidence            3466676666543     468999999999999999999999999876543    47889999999998876542     


Q ss_pred             -HHHHHHHHHHHHhc
Q 018543          225 -LRRAILSFETCRVQ  238 (354)
Q Consensus       225 -~R~ai~~L~~~~~~  238 (354)
                       +.+|+.+|+.++..
T Consensus       394 lPdKaidlldea~a~  408 (758)
T PRK11034        394 LPDKAIDVIDEAGAR  408 (758)
T ss_pred             ChHHHHHHHHHHHHh
Confidence             44899999988753

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.63  E-value=7.2e-15  Score=146.14  Aligned_cols=190  Identities=16%  Similarity=0.221  Sum_probs=121.1

Q ss_pred             CCcccccCCCCCC----------CcccCHHHHHHHHHHHhc------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc
Q 018543            1 MLWVDKYRPKTLD----------QVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE   64 (354)
Q Consensus         1 ~~w~ekyrP~~~~----------~~~g~~~~~~~l~~~l~~------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~   64 (354)
                      ++| .+|.+.+++          +.+|++.+++.+..++..      .+.+.++|+||||+||||+++.+++.+. ....
T Consensus       301 ~pw-~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~-~~~~  378 (784)
T PRK10787        301 VPW-NARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG-RKYV  378 (784)
T ss_pred             CCC-CCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC-CCEE
Confidence            467 455554432          478999999988876652      2344599999999999999999998652 2211


Q ss_pred             ccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH
Q 018543           65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR  144 (354)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~  144 (354)
                      .+...+.  .          +...+.... ..+.    +...+.    ++..+....       ....|++|||+|.+++
T Consensus       379 ~i~~~~~--~----------d~~~i~g~~-~~~~----g~~~G~----~~~~l~~~~-------~~~~villDEidk~~~  430 (784)
T PRK10787        379 RMALGGV--R----------DEAEIRGHR-RTYI----GSMPGK----LIQKMAKVG-------VKNPLFLLDEIDKMSS  430 (784)
T ss_pred             EEEcCCC--C----------CHHHhccch-hccC----CCCCcH----HHHHHHhcC-------CCCCEEEEEChhhccc
Confidence            1111100  0          000000000 0011    111111    122222211       1236999999999987


Q ss_pred             HH----HHHHHHHHhhc---------------cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHH-
Q 018543          145 EA----QHSLRRTMEKY---------------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK-  204 (354)
Q Consensus       145 ~~----~~~Ll~~le~~---------------~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~-  204 (354)
                      ..    +++|+.+++..               -+++.||+++|.. .+++++++||.+|.|.+++.+++..+.++.+.. 
T Consensus       431 ~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k  509 (784)
T PRK10787        431 DMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPK  509 (784)
T ss_pred             ccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHH
Confidence            65    58999999641               1556777777665 699999999999999999999999998876631 


Q ss_pred             ---------cCCCCCHHHHHHHHHHc
Q 018543          205 ---------EGLQLPSGFATRLAEKS  221 (354)
Q Consensus       205 ---------~~~~i~~~~l~~i~~~s  221 (354)
                               ..+.+++++++.|++..
T Consensus       510 ~~~~~~l~~~~l~i~~~ai~~ii~~y  535 (784)
T PRK10787        510 QIERNALKKGELTVDDSAIIGIIRYY  535 (784)
T ss_pred             HHHHhCCCCCeEEECHHHHHHHHHhC
Confidence                     13568899999999743

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.63  E-value=1e-14  Score=144.00  Aligned_cols=181  Identities=19%  Similarity=0.317  Sum_probs=118.9

Q ss_pred             CcccCHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543           14 QVIVHQDIAQNLKKLVTE--------QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~~--------~~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
                      .++||+++++.+...+..        ++ ..+++|+||||||||++|+.+|+.+.   ...+.+++..+.  ...     
T Consensus       459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~---~~~i~id~se~~--~~~-----  528 (758)
T PRK11034        459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEYM--ERH-----  528 (758)
T ss_pred             eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC---CCcEEeechhhc--ccc-----
Confidence            478999999988888862        22 23499999999999999999999773   223344443332  000     


Q ss_pred             cccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc------
Q 018543           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------  158 (354)
Q Consensus        85 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------  158 (354)
                      .+.     ..+...+...+......+.+.   +..         .++.||++||+|.++++.++.|+++|++..      
T Consensus       529 ~~~-----~LiG~~~gyvg~~~~g~L~~~---v~~---------~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g  591 (758)
T PRK11034        529 TVS-----RLIGAPPGYVGFDQGGLLTDA---VIK---------HPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNG  591 (758)
T ss_pred             cHH-----HHcCCCCCcccccccchHHHH---HHh---------CCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCC
Confidence            000     001111111111111112222   111         234899999999999999999999998631      


Q ss_pred             -----CceeEEEEecCC-------------------------CcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHH----
Q 018543          159 -----ASCRLILCCNSS-------------------------SKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAK----  203 (354)
Q Consensus       159 -----~~~~~Il~~~~~-------------------------~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~----  203 (354)
                           .++.+|++||.-                         ..+.|.+..|+. ++.|+|++.+++.+++...+.    
T Consensus       592 ~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~  671 (758)
T PRK11034        592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQA  671 (758)
T ss_pred             ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence                 356688888832                         125588888986 899999999999998876543    


Q ss_pred             ---HcCC--CCCHHHHHHHHHHc
Q 018543          204 ---KEGL--QLPSGFATRLAEKS  221 (354)
Q Consensus       204 ---~~~~--~i~~~~l~~i~~~s  221 (354)
                         ..|+  .+++++++.|++..
T Consensus       672 ~l~~~~i~l~~~~~~~~~l~~~~  694 (758)
T PRK11034        672 QLDQKGVSLEVSQEARDWLAEKG  694 (758)
T ss_pred             HHHHCCCCceECHHHHHHHHHhC
Confidence               2344  57799999998753

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.62  E-value=2.7e-14  Score=144.06  Aligned_cols=198  Identities=18%  Similarity=0.313  Sum_probs=128.5

Q ss_pred             CCCcccCHHHHHHHHHHHhcC--------CC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc
Q 018543           12 LDQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (354)
Q Consensus        12 ~~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   82 (354)
                      .+.++||+.+++.+...+...        ++ .+++|+||+|+|||++|+++++.+++.....+.+++..+.        
T Consensus       567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~--------  638 (857)
T PRK10865        567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM--------  638 (857)
T ss_pred             CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh--------
Confidence            456899999998888887632        11 2499999999999999999999887655444555544332        


Q ss_pred             cccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc----
Q 018543           83 DLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----  158 (354)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~----  158 (354)
                        +-..  ....+...+...+......+.+   .+ ..        .++.||+|||++.+++..++.|+++|++..    
T Consensus       639 --~~~~--~~~LiG~~pgy~g~~~~g~l~~---~v-~~--------~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~  702 (857)
T PRK10865        639 --EKHS--VSRLVGAPPGYVGYEEGGYLTE---AV-RR--------RPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG  702 (857)
T ss_pred             --hhhh--HHHHhCCCCcccccchhHHHHH---HH-Hh--------CCCCeEEEeehhhCCHHHHHHHHHHHhhCceecC
Confidence              0000  0000111111111111111111   11 11        234799999999999999999999997641    


Q ss_pred             -------CceeEEEEecCCC-------------------------cccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHH-
Q 018543          159 -------ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK-  204 (354)
Q Consensus       159 -------~~~~~Il~~~~~~-------------------------~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~-  204 (354)
                             .++.+|++||...                         .+.|.+.+|+ .++.|.|++.+++..++...+.+ 
T Consensus       703 ~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l  782 (857)
T PRK10865        703 QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRL  782 (857)
T ss_pred             CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence                   3455888888621                         2457889999 78999999999999988776543 


Q ss_pred             ------cC--CCCCHHHHHHHHHHcCC---CHHHHHHHHH
Q 018543          205 ------EG--LQLPSGFATRLAEKSNR---SLRRAILSFE  233 (354)
Q Consensus       205 ------~~--~~i~~~~l~~i~~~s~g---d~R~ai~~L~  233 (354)
                            .+  +.+++++++.|++..-.   .+|-.-+.++
T Consensus       783 ~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~  822 (857)
T PRK10865        783 YKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQ  822 (857)
T ss_pred             HHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHH
Confidence                  23  45789999999986421   3444444444

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.62  E-value=6.1e-15  Score=136.02  Aligned_cols=179  Identities=19%  Similarity=0.315  Sum_probs=114.9

Q ss_pred             cCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543            7 YRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (354)
Q Consensus         7 yrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~   73 (354)
                      ....+++++.|.+..++.++..+..           | ..| +++|+||||||||++++++++++..+-   +.+.+.. 
T Consensus       116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~---~~v~~~~-  191 (364)
T TIGR01242       116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF---IRVVGSE-  191 (364)
T ss_pred             CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE---EecchHH-
Confidence            3445788999999999888887642           1 123 399999999999999999999762211   0010000 


Q ss_pred             cccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC----------
Q 018543           74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----------  143 (354)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----------  143 (354)
                                             +.....+ .....+++.++....         ..+.||+|||+|.+.          
T Consensus       192 -----------------------l~~~~~g-~~~~~i~~~f~~a~~---------~~p~il~iDEiD~l~~~~~~~~~~~  238 (364)
T TIGR01242       192 -----------------------LVRKYIG-EGARLVREIFELAKE---------KAPSIIFIDEIDAIAAKRTDSGTSG  238 (364)
T ss_pred             -----------------------HHHHhhh-HHHHHHHHHHHHHHh---------cCCcEEEhhhhhhhccccccCCCCc
Confidence                                   0000000 011123444433222         234799999999872          


Q ss_pred             -HHHHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 018543          144 -REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (354)
Q Consensus       144 -~~~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l  214 (354)
                       .+.+..+...+.+.     ..++.+|++||.++.+.+++.+  |+ ..+.|++|+.++...+++.+.....+. ++..+
T Consensus       239 ~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~  317 (364)
T TIGR01242       239 DREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDL  317 (364)
T ss_pred             cHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCH
Confidence             34455566665332     3468899999999999999986  55 369999999999999998877544332 11246


Q ss_pred             HHHHHHcCC
Q 018543          215 TRLAEKSNR  223 (354)
Q Consensus       215 ~~i~~~s~g  223 (354)
                      ..+++.+.|
T Consensus       318 ~~la~~t~g  326 (364)
T TIGR01242       318 EAIAKMTEG  326 (364)
T ss_pred             HHHHHHcCC
Confidence            777777665

Many proteins may score above the trusted cutoff because an internal

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.62  E-value=8.3e-15  Score=129.93  Aligned_cols=157  Identities=16%  Similarity=0.192  Sum_probs=107.0

Q ss_pred             CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHH
Q 018543           33 DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ  111 (354)
Q Consensus        33 ~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~  111 (354)
                      +.|. ++||||||||||.+++++|+++-.+   .+.+++.+                        +.. .........+|
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~~---~i~vsa~e------------------------L~s-k~vGEsEk~IR  197 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE---PIVMSAGE------------------------LES-ENAGEPGKLIR  197 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC---eEEEEHHH------------------------hhc-CcCCcHHHHHH
Confidence            4444 9999999999999999999987321   12221111                        111 11122234678


Q ss_pred             HHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-----------H-HHHHHHHHhh--------------ccCceeEEE
Q 018543          112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------A-QHSLRRTMEK--------------YSASCRLIL  165 (354)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-----------~-~~~Ll~~le~--------------~~~~~~~Il  165 (354)
                      +.+.........    .+.+.||+|||+|.+.+.           . ...|+..++.              ....+.+|.
T Consensus       198 ~~F~~A~~~a~~----~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIa  273 (413)
T PLN00020        198 QRYREAADIIKK----KGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIV  273 (413)
T ss_pred             HHHHHHHHHhhc----cCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEE
Confidence            887766543211    245689999999976321           1 1356666543              235577899


Q ss_pred             EecCCCcccHHHhh--hcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Q 018543          166 CCNSSSKVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS  224 (354)
Q Consensus       166 ~~~~~~~l~~~l~s--R~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd  224 (354)
                      +||+++.+.+++++  |+..+ +..|+.++..++|+.++++.+  ++...+..|+....|-
T Consensus       274 TTNrpd~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq  331 (413)
T PLN00020        274 TGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ  331 (413)
T ss_pred             eCCCcccCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence            99999999999999  77654 458999999999999887665  4578888899988763

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.62  E-value=2.9e-14  Score=144.40  Aligned_cols=200  Identities=18%  Similarity=0.293  Sum_probs=134.0

Q ss_pred             CCcccCHHHHHHHHHHHhcC--------CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543           13 DQVIVHQDIAQNLKKLVTEQ--------DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~~--------~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      ..++||+.+++.+...+...        ++. .++|+||+|+|||++|++++..+++.....+.+++..+.-..      
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~------  638 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH------  638 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccc------
Confidence            46899999999888888642        222 399999999999999999999887765555555554332000      


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----  158 (354)
                       ..     ...+...+...+....   ..+...+..         .++.||++||++.++++.++.|+++|++..     
T Consensus       639 -~~-----~~l~g~~~g~~g~~~~---g~l~~~v~~---------~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~  700 (852)
T TIGR03346       639 -SV-----ARLIGAPPGYVGYEEG---GQLTEAVRR---------KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQ  700 (852)
T ss_pred             -hH-----HHhcCCCCCccCcccc---cHHHHHHHc---------CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCC
Confidence             00     0001111111121111   112222221         234799999999999999999999997752     


Q ss_pred             ------CceeEEEEecCCCc-------------------------ccHHHhhhc-ceeeecCCCHHHHHHHHHHHHH---
Q 018543          159 ------ASCRLILCCNSSSK-------------------------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAK---  203 (354)
Q Consensus       159 ------~~~~~Il~~~~~~~-------------------------l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~---  203 (354)
                            .++.+|++||-...                         +.|.+..|+ .++.|.|++.+++.+++.....   
T Consensus       701 g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~  780 (852)
T TIGR03346       701 GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLR  780 (852)
T ss_pred             CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHH
Confidence                  45668888886321                         335566777 5799999999999998876553   


Q ss_pred             ----HcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Q 018543          204 ----KEG--LQLPSGFATRLAEKS---NRSLRRAILSFETCR  236 (354)
Q Consensus       204 ----~~~--~~i~~~~l~~i~~~s---~gd~R~ai~~L~~~~  236 (354)
                          ..+  +.+++++++.|++..   .+++|..-+.++...
T Consensus       781 ~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i  822 (852)
T TIGR03346       781 KRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI  822 (852)
T ss_pred             HHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence                222  568899999999973   477888877777553

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.61  E-value=2.8e-14  Score=142.47  Aligned_cols=182  Identities=20%  Similarity=0.263  Sum_probs=120.0

Q ss_pred             CCcccCHHHHHHHHHHHhc--------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543           13 DQVIVHQDIAQNLKKLVTE--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~--------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      ..++||+++++.+...+..        +++. +++|+||+|||||++|+++|+.+.+   ..+.+++..+.         
T Consensus       454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d~se~~---------  521 (731)
T TIGR02639       454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV---HLERFDMSEYM---------  521 (731)
T ss_pred             cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEeCchhh---------
Confidence            3578999999988888763        1222 3999999999999999999997732   22334433322         


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----  158 (354)
                       +..     ....+..+..+.........+.+.+..         .++.||+|||+|.++++.++.|+++|++..     
T Consensus       522 -~~~-----~~~~lig~~~gyvg~~~~~~l~~~~~~---------~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~  586 (731)
T TIGR02639       522 -EKH-----TVSRLIGAPPGYVGFEQGGLLTEAVRK---------HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNN  586 (731)
T ss_pred             -hcc-----cHHHHhcCCCCCcccchhhHHHHHHHh---------CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCC
Confidence             000     000011111111110111222222221         234899999999999999999999998641     


Q ss_pred             ------CceeEEEEecCCC-------------------------cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHH--
Q 018543          159 ------ASCRLILCCNSSS-------------------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK--  204 (354)
Q Consensus       159 ------~~~~~Il~~~~~~-------------------------~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~--  204 (354)
                            .++.+|+++|...                         .+.|.+.+|+. ++.|+|++.+++.+++...+.+  
T Consensus       587 g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~  666 (731)
T TIGR02639       587 GRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELS  666 (731)
T ss_pred             CcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence                  3566888876532                         25677888985 8999999999999999876652  


Q ss_pred             -----cC--CCCCHHHHHHHHHHc
Q 018543          205 -----EG--LQLPSGFATRLAEKS  221 (354)
Q Consensus       205 -----~~--~~i~~~~l~~i~~~s  221 (354)
                           .|  +.+++++++.|++.+
T Consensus       667 ~~l~~~~~~l~i~~~a~~~La~~~  690 (731)
T TIGR02639       667 KQLNEKNIKLELTDDAKKYLAEKG  690 (731)
T ss_pred             HHHHhCCCeEEeCHHHHHHHHHhC
Confidence                 22  567899999999864

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=2.4e-14  Score=119.21  Aligned_cols=162  Identities=22%  Similarity=0.336  Sum_probs=113.2

Q ss_pred             CCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      .+..|+-|.+-.++.++..++-           | .+|. +|+|||||||||.+++++|+.-   ....+.+.|.+|.  
T Consensus       152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~firvvgsefv--  226 (408)
T KOG0727|consen  152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV--  226 (408)
T ss_pred             ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHH--
Confidence            4778888877777777777641           3 2333 9999999999999999999853   1222333333332  


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-----------CHH
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-----------SRE  145 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-----------~~~  145 (354)
                                        -.+..+    .. ..+|++++...+..         +.||||||+|.+           +.+
T Consensus       227 ------------------qkylge----gp-rmvrdvfrlakena---------psiifideidaiatkrfdaqtgadre  274 (408)
T KOG0727|consen  227 ------------------QKYLGE----GP-RMVRDVFRLAKENA---------PSIIFIDEIDAIATKRFDAQTGADRE  274 (408)
T ss_pred             ------------------HHHhcc----Cc-HHHHHHHHHHhccC---------CcEEEeehhhhHhhhhccccccccHH
Confidence                              011111    11 23667765544433         479999999876           345


Q ss_pred             HHHHHHHHHhh-----ccCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCC
Q 018543          146 AQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQ  208 (354)
Q Consensus       146 ~~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~  208 (354)
                      .|..|+.++.+     ...++.+|+.||..+.+.|++.+-.   ..|+|+.|+..+.+-+...+..+.++.
T Consensus       275 vqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls  345 (408)
T KOG0727|consen  275 VQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS  345 (408)
T ss_pred             HHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence            67777777754     3568999999999999999998854   369999999999888888888776654

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=2.8e-14  Score=132.06  Aligned_cols=174  Identities=22%  Similarity=0.333  Sum_probs=121.1

Q ss_pred             CCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      .+|+|+-+.+++..+|..++-.           | ..|. +|||||||||||.+|+++|++-   ..+.+.+-       
T Consensus       508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa---g~NFisVK-------  577 (802)
T KOG0733|consen  508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA---GANFISVK-------  577 (802)
T ss_pred             CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc---cCceEeec-------
Confidence            5789998999999999887742           2 2344 9999999999999999999974   11111111       


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----------H
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E  145 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~  145 (354)
                                    .++.+..   ..| .....+|.++.......         +.|||+||+|.|.+           .
T Consensus       578 --------------GPELlNk---YVG-ESErAVR~vFqRAR~sa---------PCVIFFDEiDaL~p~R~~~~s~~s~R  630 (802)
T KOG0733|consen  578 --------------GPELLNK---YVG-ESERAVRQVFQRARASA---------PCVIFFDEIDALVPRRSDEGSSVSSR  630 (802)
T ss_pred             --------------CHHHHHH---Hhh-hHHHHHHHHHHHhhcCC---------CeEEEecchhhcCcccCCCCchhHHH
Confidence                          1111110   011 11235777776655433         48999999999943           3


Q ss_pred             HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHH
Q 018543          146 AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-ATRLAE  219 (354)
Q Consensus       146 ~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~-l~~i~~  219 (354)
                      ..|.|+.-|...  ..++.+|.+||.|+-+.+++.+-.   ..+.+..|+.++...+|+.+.+..+..+++++ ++.|+.
T Consensus       631 vvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~  710 (802)
T KOG0733|consen  631 VVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIAR  710 (802)
T ss_pred             HHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhh
Confidence            567777777543  345777888999999999999854   35888899999999999998886666666554 777776


Q ss_pred             H
Q 018543          220 K  220 (354)
Q Consensus       220 ~  220 (354)
                      .
T Consensus       711 ~  711 (802)
T KOG0733|consen  711 N  711 (802)
T ss_pred             c
Confidence            4

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.4e-14  Score=136.21  Aligned_cols=194  Identities=16%  Similarity=0.236  Sum_probs=124.1

Q ss_pred             CcccCHHHHHHHHHHHhcCC------CCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543           14 QVIVHQDIAQNLKKLVTEQD------CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~~~~------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
                      |-+|-+++++++...+.-++      .+-++|+||||+|||++++.+|+.|.. ....+.+.|.            .+..
T Consensus       412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-kFfRfSvGG~------------tDvA  478 (906)
T KOG2004|consen  412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR-KFFRFSVGGM------------TDVA  478 (906)
T ss_pred             cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC-ceEEEecccc------------ccHH
Confidence            56788899988888875322      223999999999999999999998722 1111111111            0111


Q ss_pred             ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH----HHHHHHHHHh--hc----
Q 018543           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----AQHSLRRTME--KY----  157 (354)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----~~~~Ll~~le--~~----  157 (354)
                      .+...+ -.|...-+|     .+-+.++.+..          ...+++|||+|.+...    -..+|+.+|+  +.    
T Consensus       479 eIkGHR-RTYVGAMPG-----kiIq~LK~v~t----------~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFl  542 (906)
T KOG2004|consen  479 EIKGHR-RTYVGAMPG-----KIIQCLKKVKT----------ENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFL  542 (906)
T ss_pred             hhcccc-eeeeccCCh-----HHHHHHHhhCC----------CCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchh
Confidence            111111 111111111     12233333332          3468999999998532    2457888772  21    


Q ss_pred             ---------cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHH
Q 018543          158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK----------KEGLQLPSGFATRLA  218 (354)
Q Consensus       158 ---------~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~----------~~~~~i~~~~l~~i~  218 (354)
                               -+.+.||+++|..+.|++++++|..+|.++.+..++..++..+++-          .+.++++++++..++
T Consensus       543 DHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI  622 (906)
T KOG2004|consen  543 DHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALI  622 (906)
T ss_pred             hhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHH
Confidence                     1457899999999999999999999999999999999998887653          234678899988887


Q ss_pred             HHcC--CCHHHHHHHHHHHH
Q 018543          219 EKSN--RSLRRAILSFETCR  236 (354)
Q Consensus       219 ~~s~--gd~R~ai~~L~~~~  236 (354)
                      +.-.  ..+|..-..++..+
T Consensus       623 ~~YcrEaGVRnLqk~iekI~  642 (906)
T KOG2004|consen  623 ERYCREAGVRNLQKQIEKIC  642 (906)
T ss_pred             HHHHHHHhHHHHHHHHHHHH
Confidence            7432  23555555554433

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.60  E-value=1.8e-13  Score=115.38  Aligned_cols=190  Identities=20%  Similarity=0.292  Sum_probs=130.6

Q ss_pred             cccCCCCCCCcccCHHHHHHHH----HHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            5 DKYRPKTLDQVIVHQDIAQNLK----KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~~~~~l~----~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      ....|..+++++|-+..++.|.    ..++.....|+||+|+.|||||++++++..++...+..                
T Consensus        19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLR----------------   82 (249)
T PF05673_consen   19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLR----------------   82 (249)
T ss_pred             CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCce----------------
Confidence            4456788999999766655444    44444444459999999999999999999877443321                


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCc-CCHHHHHHHHHHH----h
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTM----E  155 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~-l~~~~~~~Ll~~l----e  155 (354)
                                   .+++...+..     .+.++++.+...        ..+-||++|+... -.......|..+|    +
T Consensus        83 -------------lIev~k~~L~-----~l~~l~~~l~~~--------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle  136 (249)
T PF05673_consen   83 -------------LIEVSKEDLG-----DLPELLDLLRDR--------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLE  136 (249)
T ss_pred             -------------EEEECHHHhc-----cHHHHHHHHhcC--------CCCEEEEecCCCCCCCcHHHHHHHHHhcCccc
Confidence                         2444433322     244555555532        2346899999642 1334456666666    4


Q ss_pred             hccCceeEEEEecCCCcccH-----------------------HHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543          156 KYSASCRLILCCNSSSKVTE-----------------------AIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (354)
Q Consensus       156 ~~~~~~~~Il~~~~~~~l~~-----------------------~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~  211 (354)
                      ..|.++.+..|+|..+-+.+                       +|.+|+ ..+.|.+|+.++-.++++..+.+.|+.+++
T Consensus       137 ~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~  216 (249)
T PF05673_consen  137 ARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDE  216 (249)
T ss_pred             cCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence            56788888888886542222                       344565 479999999999999999999999999984


Q ss_pred             -----HHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543          212 -----GFATRLAEKSNRSLRRAILSFETCR  236 (354)
Q Consensus       212 -----~~l~~i~~~s~gd~R~ai~~L~~~~  236 (354)
                           +++.......+.+.|.|-...+.+.
T Consensus       217 e~l~~~Al~wa~~rg~RSGRtA~QF~~~l~  246 (249)
T PF05673_consen  217 EELRQEALQWALRRGGRSGRTARQFIDDLA  246 (249)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence                 4556666677778999888776554

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.59  E-value=3.5e-13  Score=118.47  Aligned_cols=102  Identities=19%  Similarity=0.259  Sum_probs=77.4

Q ss_pred             eEEEEeCCCcCCHHHHHHHHHHHhhcc----------------CceeEEEEecCCC-----cccHHHhhhcceeeecCCC
Q 018543          132 KVLVLNEVDKLSREAQHSLRRTMEKYS----------------ASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPT  190 (354)
Q Consensus       132 ~viiiDE~d~l~~~~~~~Ll~~le~~~----------------~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~  190 (354)
                      .+++|||++.++++.++.|+..|++..                ++.++|+++|...     .+.+++.+||..+.++.|+
T Consensus       107 ~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~  186 (262)
T TIGR02640       107 FTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPD  186 (262)
T ss_pred             CEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCC
Confidence            699999999999999999999997521                2566888888653     5688999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----------CCHHHHHHHHHHHHhc
Q 018543          191 EEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN----------RSLRRAILSFETCRVQ  238 (354)
Q Consensus       191 ~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~----------gd~R~ai~~L~~~~~~  238 (354)
                      .++..+++....     .++++.++.+++...          -.+|.++.+.+.+...
T Consensus       187 ~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~  239 (262)
T TIGR02640       187 IDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQ  239 (262)
T ss_pred             HHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHc
Confidence            999999998643     356777666665321          1266677666665544

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2.7e-14  Score=134.96  Aligned_cols=194  Identities=16%  Similarity=0.230  Sum_probs=122.7

Q ss_pred             CcccCHHHHHHHHHHHhc------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543           14 QVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~~------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
                      |-+|-++++.++...+.-      -+.|-++|+||||+|||++++.+|+.+... .-.+.+.|..-.         .++ 
T Consensus       324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk-fvR~sLGGvrDE---------AEI-  392 (782)
T COG0466         324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK-FVRISLGGVRDE---------AEI-  392 (782)
T ss_pred             cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC-EEEEecCccccH---------HHh-
Confidence            457778888877776631      223449999999999999999999977221 111111111000         011 


Q ss_pred             ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH----HHHHHHHHHh--hc----
Q 018543           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----AQHSLRRTME--KY----  157 (354)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----~~~~Ll~~le--~~----  157 (354)
                        .++ --.|..+-+|    ..++. ++...          ....+++|||+|.|+.+    =..+|+.+|+  +.    
T Consensus       393 --RGH-RRTYIGamPG----rIiQ~-mkka~----------~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~  454 (782)
T COG0466         393 --RGH-RRTYIGAMPG----KIIQG-MKKAG----------VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFS  454 (782)
T ss_pred             --ccc-cccccccCCh----HHHHH-HHHhC----------CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchh
Confidence              000 0111111111    12222 22222          23468999999999643    3467888883  21    


Q ss_pred             ---------cCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHH-----HHcC-----CCCCHHHHHHHH
Q 018543          158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIA-----KKEG-----LQLPSGFATRLA  218 (354)
Q Consensus       158 ---------~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~-----~~~~-----~~i~~~~l~~i~  218 (354)
                               -+++.||.++|..+.++.+|++|+.+|+++.++.++-.++.++++     .+.|     +.++++++..|+
T Consensus       455 DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI  534 (782)
T COG0466         455 DHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDII  534 (782)
T ss_pred             hccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHH
Confidence                     146889999999999999999999999999999999999888754     2333     468899999998


Q ss_pred             HHcC--CCHHHHHHHHHHHH
Q 018543          219 EKSN--RSLRRAILSFETCR  236 (354)
Q Consensus       219 ~~s~--gd~R~ai~~L~~~~  236 (354)
                      +.-.  -.+|..-..+...|
T Consensus       535 ~~YTREAGVR~LeR~i~ki~  554 (782)
T COG0466         535 RYYTREAGVRNLEREIAKIC  554 (782)
T ss_pred             HHHhHhhhhhHHHHHHHHHH
Confidence            8532  23555555555444

>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]

Probab=99.57  E-value=2.5e-13  Score=115.45  Aligned_cols=102  Identities=29%  Similarity=0.318  Sum_probs=91.2

Q ss_pred             ceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC-------------CCcccHHHhhhcceeeecCCCHHHHHHH
Q 018543          131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS-------------SSKVTEAIRSRCLNIRINSPTEEQIVKV  197 (354)
Q Consensus       131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~-------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~  197 (354)
                      +.|+||||+++|+-+....|.+.+|.+-. ..+||++|.             |+.+++.+.+|..+|+-.++++++++.+
T Consensus       297 PGVLFIDEVhMLDiEcFTyL~kalES~ia-PivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I  375 (456)
T KOG1942|consen  297 PGVLFIDEVHMLDIECFTYLHKALESPIA-PIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI  375 (456)
T ss_pred             CcceEeeehhhhhhHHHHHHHHHhcCCCC-ceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence            67999999999999999999999998643 567777774             3468999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHH
Q 018543          198 LEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFE  233 (354)
Q Consensus       198 L~~~~~~~~~~i~~~~l~~i~~~s-~gd~R~ai~~L~  233 (354)
                      ++.+++.|++.++++++..+++.. ..++|.++.+|-
T Consensus       376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~  412 (456)
T KOG1942|consen  376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLT  412 (456)
T ss_pred             HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcC
Confidence            999999999999999999999964 568999999987

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.4e-13  Score=121.28  Aligned_cols=175  Identities=22%  Similarity=0.307  Sum_probs=116.1

Q ss_pred             CCCCCcccCHHHHHHHHHHHh----------cCCCC--eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543           10 KTLDQVIVHQDIAQNLKKLVT----------EQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~----------~~~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~   77 (354)
                      ..++|+.|..++++.|+.++-          ..+-|  .+|++||||+|||.+|+++|.+..           ..|.   
T Consensus       209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~-----------tTFF---  274 (491)
T KOG0738|consen  209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG-----------TTFF---  274 (491)
T ss_pred             cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc-----------CeEE---
Confidence            478999999999999998762          23333  299999999999999999998641           1111   


Q ss_pred             CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------------HH
Q 018543           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------RE  145 (354)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------------~~  145 (354)
                             .++.       ....+..+......+|-+++......|         .+|||||+|.|.            ..
T Consensus       275 -------NVSs-------stltSKwRGeSEKlvRlLFemARfyAP---------StIFiDEIDslcs~RG~s~EHEaSRR  331 (491)
T KOG0738|consen  275 -------NVSS-------STLTSKWRGESEKLVRLLFEMARFYAP---------STIFIDEIDSLCSQRGGSSEHEASRR  331 (491)
T ss_pred             -------Eech-------hhhhhhhccchHHHHHHHHHHHHHhCC---------ceeehhhHHHHHhcCCCccchhHHHH
Confidence                   0000       001122233333467777766555554         689999999883            22


Q ss_pred             HHHHHHHHHhhcc-----CceeEEEE-ecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 018543          146 AQHSLRRTMEKYS-----ASCRLILC-CNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRL  217 (354)
Q Consensus       146 ~~~~Ll~~le~~~-----~~~~~Il~-~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i-~~~~l~~i  217 (354)
                      ..+.|+-.|+...     ...++|++ ||.|..|.+++++|+. .|.++-|+.+.....++.-+.  .+.. ++-.++.|
T Consensus       332 vKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~--~~~~~~~~~~~~l  409 (491)
T KOG0738|consen  332 VKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLR--SVELDDPVNLEDL  409 (491)
T ss_pred             HHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhc--cccCCCCccHHHH
Confidence            4556777774321     23456664 5667799999999996 699999998888888776543  3333 34456777


Q ss_pred             HHHcCC
Q 018543          218 AEKSNR  223 (354)
Q Consensus       218 ~~~s~g  223 (354)
                      ++.+.|
T Consensus       410 ae~~eG  415 (491)
T KOG0738|consen  410 AERSEG  415 (491)
T ss_pred             HHHhcC
Confidence            776655

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.56  E-value=5.1e-13  Score=118.38  Aligned_cols=200  Identities=17%  Similarity=0.173  Sum_probs=114.5

Q ss_pred             CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeee
Q 018543           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL   97 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   97 (354)
                      +..+...+...++.+ .+.++++||+|+||||+++.+++.+.+.......+.    .  +..... --+..+.  ..+.+
T Consensus        28 ~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~----~--~~~~~~-~~l~~i~--~~lG~   97 (269)
T TIGR03015        28 HKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV----N--TRVDAE-DLLRMVA--ADFGL   97 (269)
T ss_pred             HHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee----C--CCCCHH-HHHHHHH--HHcCC
Confidence            344556666555543 223899999999999999999987643211000000    0  000000 0000000  00111


Q ss_pred             CCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---CceeEEEEecCCC---
Q 018543           98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---ASCRLILCCNSSS---  171 (354)
Q Consensus        98 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---~~~~~Il~~~~~~---  171 (354)
                      ...  +.......+.+...+....     ..++..+++|||++.++....+.|..+.+-..   ....++++. .+.   
T Consensus        98 ~~~--~~~~~~~~~~l~~~l~~~~-----~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g-~~~~~~  169 (269)
T TIGR03015        98 ETE--GRDKAALLRELEDFLIEQF-----AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVG-QPEFRE  169 (269)
T ss_pred             CCC--CCCHHHHHHHHHHHHHHHH-----hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcC-CHHHHH
Confidence            111  1111111222222221111     12445799999999999888777665443211   122344443 332   


Q ss_pred             ----cccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543          172 ----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEG----LQLPSGFATRLAEKSNRSLRRAILSFETC  235 (354)
Q Consensus       172 ----~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~----~~i~~~~l~~i~~~s~gd~R~ai~~L~~~  235 (354)
                          .-..++.+|+ ..+++++++.+++..++...+...|    ..+++++++.|++.++|++|....+++.+
T Consensus       170 ~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       170 TLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             HHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence                1234677885 5789999999999999999887655    36899999999999999999976666654

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=1.5e-13  Score=132.32  Aligned_cols=183  Identities=20%  Similarity=0.280  Sum_probs=127.6

Q ss_pred             CCCCCCCcccCHHHHHHHHHHHhc----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543            8 RPKTLDQVIVHQDIAQNLKKLVTE----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (354)
Q Consensus         8 rP~~~~~~~g~~~~~~~l~~~l~~----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~   75 (354)
                      .+.+|+|+.|.++++..|...+.-          | ++|. +||+||||||||.+|+++|.+.   +...+.+++.+|  
T Consensus       306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEF--  380 (774)
T KOG0731|consen  306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEF--  380 (774)
T ss_pred             CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc---CCceeeechHHH--
Confidence            346899999999999988887741          2 5666 9999999999999999999874   122222233222  


Q ss_pred             cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----------
Q 018543           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------  144 (354)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------  144 (354)
                                         ++....    .....+++++.......         +.+|+|||+|....           
T Consensus       381 -------------------vE~~~g----~~asrvr~lf~~ar~~a---------P~iifideida~~~~r~G~~~~~~~  428 (774)
T KOG0731|consen  381 -------------------VEMFVG----VGASRVRDLFPLARKNA---------PSIIFIDEIDAVGRKRGGKGTGGGQ  428 (774)
T ss_pred             -------------------HHHhcc----cchHHHHHHHHHhhccC---------CeEEEecccccccccccccccCCCC
Confidence                               222111    11235778876655443         37999999987631           


Q ss_pred             -H---HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhh--c-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 018543          145 -E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (354)
Q Consensus       145 -~---~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~  215 (354)
                       +   ..|.|+--|+..  ..++.++..||.++-+.+++++-  + ..|+...|+......+++.++.+.....++..+.
T Consensus       429 ~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~  508 (774)
T KOG0731|consen  429 DEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLS  508 (774)
T ss_pred             hHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHH
Confidence             2   234444444432  34567777888999999999884  4 3699999999999999999988766665666677


Q ss_pred             HHHHHcCCCHHH
Q 018543          216 RLAEKSNRSLRR  227 (354)
Q Consensus       216 ~i~~~s~gd~R~  227 (354)
                      .++....|.-..
T Consensus       509 ~~a~~t~gf~ga  520 (774)
T KOG0731|consen  509 KLASLTPGFSGA  520 (774)
T ss_pred             HHHhcCCCCcHH
Confidence            788887775443

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.53  E-value=7.2e-13  Score=119.09  Aligned_cols=225  Identities=15%  Similarity=0.182  Sum_probs=119.0

Q ss_pred             cCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccc-cccccccccCCCcccccc
Q 018543            7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK-VENKTWKIDAGSRNIDLE   85 (354)
Q Consensus         7 yrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~   85 (354)
                      -.|..|++++||+++++.+.-.+-.....|+||.||||+||||+++++++.+-+....... +.+.... .++.......
T Consensus         2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~-~~~~~~~~~~   80 (334)
T PRK13407          2 KKPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE-DCPEWAHVSS   80 (334)
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc-CCcccccccC
Confidence            4588999999999999877754432234679999999999999999999965322111000 0000000 0000000000


Q ss_pred             cccccc-CceeeeCC--CCCCCcchhHHHHHHHHHHhcCCCCCC---CCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-
Q 018543           86 LTTLSS-ANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPIDTK---GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-  158 (354)
Q Consensus        86 ~~~~~~-~~~i~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-  158 (354)
                      ...... ...+.+..  .+........+...+   .........   ......++++||++.+++..|+.|+..|++.. 
T Consensus        81 ~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l---~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v  157 (334)
T PRK13407         81 TTMIERPTPVVDLPLGVTEDRVVGALDIERAL---TRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGEN  157 (334)
T ss_pred             CcccccCCccccCCCCCCcceeecchhhhhhh---hcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCe
Confidence            000000 00011110  111111111111111   111110001   12334699999999999999999999997642 


Q ss_pred             ----------CceeEEEEec-CC-C-cccHHHhhhcc-eeeecCCCH-HHHHHHHHHHHHH-------------------
Q 018543          159 ----------ASCRLILCCN-SS-S-KVTEAIRSRCL-NIRINSPTE-EQIVKVLEFIAKK-------------------  204 (354)
Q Consensus       159 ----------~~~~~Il~~~-~~-~-~l~~~l~sR~~-~i~~~~~~~-~~~~~~L~~~~~~-------------------  204 (354)
                                ....|+++++ ++ + .+.+++.+|+. .+.++++.. ++..+++.+....                   
T Consensus       158 ~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~  237 (334)
T PRK13407        158 VVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLR  237 (334)
T ss_pred             EEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCH
Confidence                      1233444443 22 2 58889999985 577777765 6656666543210                   


Q ss_pred             ----------cCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHH
Q 018543          205 ----------EGLQLPSGFATRLAEKS----NRSLRRAILSFETC  235 (354)
Q Consensus       205 ----------~~~~i~~~~l~~i~~~s----~gd~R~ai~~L~~~  235 (354)
                                ..+.++++.++++++.+    ..+.|..+.++..+
T Consensus       238 ~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA  282 (334)
T PRK13407        238 GRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAA  282 (334)
T ss_pred             HHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence                      13456777776666532    13566666655543

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.52  E-value=7.3e-14  Score=109.82  Aligned_cols=115  Identities=26%  Similarity=0.335  Sum_probs=77.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~  116 (354)
                      ++|+||||+|||++++.+|+.+.   ...+.+++....                         +.........++.+++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~~~~-------------------------~~~~~~~~~~i~~~~~~   52 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGSELI-------------------------SSYAGDSEQKIRDFFKK   52 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETTHHH-------------------------TSSTTHHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc---cccccccccccc-------------------------ccccccccccccccccc
Confidence            68999999999999999999761   111111111100                         00111122345555555


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCCCcCCHHH-----------HHHHHHHHhhccC---ceeEEEEecCCCcccHHHh-hhc
Q 018543          117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREA-----------QHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIR-SRC  181 (354)
Q Consensus       117 ~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-----------~~~Ll~~le~~~~---~~~~Il~~~~~~~l~~~l~-sR~  181 (354)
                      .....        .+.|++|||+|.+....           .+.|+..++....   ++.+|++||+.+.+.+++. +||
T Consensus        53 ~~~~~--------~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf  124 (132)
T PF00004_consen   53 AKKSA--------KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRF  124 (132)
T ss_dssp             HHHTS--------TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTS
T ss_pred             ccccc--------cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCC
Confidence            43322        24899999999997665           7788888877654   4889999999999999999 998


Q ss_pred             c-eeeec
Q 018543          182 L-NIRIN  187 (354)
Q Consensus       182 ~-~i~~~  187 (354)
                      . .+.|+
T Consensus       125 ~~~i~~~  131 (132)
T PF00004_consen  125 DRRIEFP  131 (132)
T ss_dssp             EEEEEE-
T ss_pred             cEEEEcC
Confidence            6 46554

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=1.1e-13  Score=115.30  Aligned_cols=168  Identities=20%  Similarity=0.350  Sum_probs=114.1

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhc-----------C--CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~   69 (354)
                      -+||....+.+-+-|.+..++.++..++-           |  .+..+|||||||+|||.+|+++|..-.|   ..+.+.
T Consensus       137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c---~firvs  213 (404)
T KOG0728|consen  137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---TFIRVS  213 (404)
T ss_pred             hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce---EEEEec
Confidence            45666555555555567777778777642           2  2223999999999999999999985321   111111


Q ss_pred             cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-------
Q 018543           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-------  142 (354)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-------  142 (354)
                      +.+..                    -.+.    | .....+|+++-...+..|         .+||+||+|.+       
T Consensus       214 gselv--------------------qk~i----g-egsrmvrelfvmarehap---------siifmdeidsigs~r~e~  259 (404)
T KOG0728|consen  214 GSELV--------------------QKYI----G-EGSRMVRELFVMAREHAP---------SIIFMDEIDSIGSSRVES  259 (404)
T ss_pred             hHHHH--------------------HHHh----h-hhHHHHHHHHHHHHhcCC---------ceEeeecccccccccccC
Confidence            11100                    0000    1 111246777766555443         79999999987       


Q ss_pred             ----CHHHHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCC
Q 018543          143 ----SREAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGL  207 (354)
Q Consensus       143 ----~~~~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~  207 (354)
                          +.+.|..++.++.+.     ..+..+|++||..+-+.+++.+-..   .|+||||+.+...++|+-+.++.++
T Consensus       260 ~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl  336 (404)
T KOG0728|consen  260 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL  336 (404)
T ss_pred             CCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch
Confidence                356788888877643     4678999999999999999988553   5999999999999999987776544

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=3.4e-13  Score=118.53  Aligned_cols=183  Identities=25%  Similarity=0.326  Sum_probs=115.6

Q ss_pred             CCCCCcccCHHHHHHHHHHHh----------cC---CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVT----------EQ---DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~----------~~---~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~   75 (354)
                      .+|+|+-|-+.+++.++..+-          .|   +.+ .+|++||||||||.+|+++|++..+.-   +++...    
T Consensus        89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~f---Inv~~s----  161 (386)
T KOG0737|consen   89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANF---INVSVS----  161 (386)
T ss_pred             eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCc---ceeecc----
Confidence            478999999999999988762          12   222 399999999999999999999763221   111111    


Q ss_pred             cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-------HHHHH
Q 018543           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------REAQH  148 (354)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------~~~~~  148 (354)
                                  .+.+        .-+|     .-+.+++.+-..+     ..=.+.+|+|||+|.+.       .++..
T Consensus       162 ------------~lt~--------KWfg-----E~eKlv~AvFslA-----sKl~P~iIFIDEvds~L~~R~s~dHEa~a  211 (386)
T KOG0737|consen  162 ------------NLTS--------KWFG-----EAQKLVKAVFSLA-----SKLQPSIIFIDEVDSFLGQRRSTDHEATA  211 (386)
T ss_pred             ------------ccch--------hhHH-----HHHHHHHHHHhhh-----hhcCcceeehhhHHHHHhhcccchHHHHH
Confidence                        0000        0001     1112222221111     12356899999998764       22211


Q ss_pred             HHHH-------HHh-hccCceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 018543          149 SLRR-------TME-KYSASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE  219 (354)
Q Consensus       149 ~Ll~-------~le-~~~~~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~  219 (354)
                      .+..       -+. +....+.+..+||.|..+.+++.+|. ..++++-|+.++..+||+-++..+.+. ++-.+..++.
T Consensus       212 ~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~  290 (386)
T KOG0737|consen  212 MMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQ  290 (386)
T ss_pred             HHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHH
Confidence            1111       111 11223445557888999999999995 789999999999999999999988876 3445788888


Q ss_pred             HcCCCHHHHHH
Q 018543          220 KSNRSLRRAIL  230 (354)
Q Consensus       220 ~s~gd~R~ai~  230 (354)
                      .+.|--..-+.
T Consensus       291 ~t~GySGSDLk  301 (386)
T KOG0737|consen  291 MTEGYSGSDLK  301 (386)
T ss_pred             hcCCCcHHHHH
Confidence            88775444333

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.49  E-value=9.7e-13  Score=131.88  Aligned_cols=180  Identities=19%  Similarity=0.281  Sum_probs=119.1

Q ss_pred             CCCCCCcccCHHHHHHHHHHHhc-----------C-CC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543            9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (354)
Q Consensus         9 P~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~   75 (354)
                      ..+|+|+.|.+..++.++.++..           | .. .+++|+||||||||++++++|+++..+   .+.+++..+. 
T Consensus       174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~---~i~i~~~~i~-  249 (733)
T TIGR01243       174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY---FISINGPEIM-  249 (733)
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe---EEEEecHHHh-
Confidence            35799999999999888887742           1 12 239999999999999999999976211   1111111000 


Q ss_pred             cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-----------H
Q 018543           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------R  144 (354)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------~  144 (354)
                                              +.........++.+++.....         .+.+|+|||+|.+.           .
T Consensus       250 ------------------------~~~~g~~~~~l~~lf~~a~~~---------~p~il~iDEid~l~~~r~~~~~~~~~  296 (733)
T TIGR01243       250 ------------------------SKYYGESEERLREIFKEAEEN---------APSIIFIDEIDAIAPKREEVTGEVEK  296 (733)
T ss_pred             ------------------------cccccHHHHHHHHHHHHHHhc---------CCcEEEeehhhhhcccccCCcchHHH
Confidence                                    001111112355555544332         34799999998773           2


Q ss_pred             HHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 018543          145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLA  218 (354)
Q Consensus       145 ~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~-~~~l~~i~  218 (354)
                      ..++.|+..|+....  .+.+|.++|.++.+.+++++  |+ ..+.|+.|+.++...+|+....  +..+. +..++.++
T Consensus       297 ~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la  374 (733)
T TIGR01243       297 RVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLA  374 (733)
T ss_pred             HHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHH
Confidence            356778888865433  35566688888899999987  55 4699999999999999986554  44443 34578888


Q ss_pred             HHcCCCHHH
Q 018543          219 EKSNRSLRR  227 (354)
Q Consensus       219 ~~s~gd~R~  227 (354)
                      +.+.|-...
T Consensus       375 ~~t~G~~ga  383 (733)
T TIGR01243       375 EVTHGFVGA  383 (733)
T ss_pred             HhCCCCCHH
Confidence            888775444

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=7.9e-13  Score=110.76  Aligned_cols=175  Identities=18%  Similarity=0.305  Sum_probs=114.8

Q ss_pred             CCCCCcccCHHHHHHHHHHHh-----------cC-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVT-----------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~-----------~~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      .+.+|+-|.+..++.|..++-           -| ++|. +|+|||||+|||.+||+.|..-...               
T Consensus       168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT---------------  232 (424)
T KOG0652|consen  168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT---------------  232 (424)
T ss_pred             ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch---------------
Confidence            368888888888877776652           13 3333 9999999999999999998753110               


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-----------CHH
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-----------SRE  145 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-----------~~~  145 (354)
                               +-.+..++.+.+...    .....+|+.+.-..         ...+.||||||+|.+           +.+
T Consensus       233 ---------FLKLAgPQLVQMfIG----dGAkLVRDAFaLAK---------EkaP~IIFIDElDAIGtKRfDSek~GDRE  290 (424)
T KOG0652|consen  233 ---------FLKLAGPQLVQMFIG----DGAKLVRDAFALAK---------EKAPTIIFIDELDAIGTKRFDSEKAGDRE  290 (424)
T ss_pred             ---------HHHhcchHHHhhhhc----chHHHHHHHHHHhh---------ccCCeEEEEechhhhccccccccccccHH
Confidence                     000111111111111    11123455443222         234589999999977           356


Q ss_pred             HHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543          146 AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (354)
Q Consensus       146 ~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i  217 (354)
                      .|..++.++.+.     ...+.+|..||..+-+.|++.+..   ..|+||.|+.+...++++-+.++.++. ++-..+.+
T Consensus       291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeEL  369 (424)
T KOG0652|consen  291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEEL  369 (424)
T ss_pred             HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHH
Confidence            778888877653     346789999999999999987654   369999999999999999888776664 12235666


Q ss_pred             HHHcC
Q 018543          218 AEKSN  222 (354)
Q Consensus       218 ~~~s~  222 (354)
                      ++...
T Consensus       370 aRsTd  374 (424)
T KOG0652|consen  370 ARSTD  374 (424)
T ss_pred             hhccc
Confidence            66543

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=3.6e-13  Score=114.80  Aligned_cols=176  Identities=22%  Similarity=0.268  Sum_probs=114.4

Q ss_pred             CCCCcccCHHHHHHHHHHHh----------cCCCCe--EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543           11 TLDQVIVHQDIAQNLKKLVT----------EQDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~----------~~~~~~--~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~   78 (354)
                      .++|+.|.+.+++.|+..+-          .++.|-  +|||||||+|||.+|+++|.+.. ..  ...+          
T Consensus       131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-ST--FFSv----------  197 (439)
T KOG0739|consen  131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-ST--FFSV----------  197 (439)
T ss_pred             chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-Cc--eEEe----------
Confidence            68999999999999998662          344443  99999999999999999998652 11  0000          


Q ss_pred             CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH----H-------HH
Q 018543           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----E-------AQ  147 (354)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----~-------~~  147 (354)
                                 ++.+.+.   .-.|- ....+++++....+.         ++.||||||+|.+..    +       ..
T Consensus       198 -----------SSSDLvS---KWmGE-SEkLVknLFemARe~---------kPSIIFiDEiDslcg~r~enEseasRRIK  253 (439)
T KOG0739|consen  198 -----------SSSDLVS---KWMGE-SEKLVKNLFEMAREN---------KPSIIFIDEIDSLCGSRSENESEASRRIK  253 (439)
T ss_pred             -----------ehHHHHH---HHhcc-HHHHHHHHHHHHHhc---------CCcEEEeehhhhhccCCCCCchHHHHHHH
Confidence                       0000000   00111 112456666554443         457999999998831    1       12


Q ss_pred             HHHHHHHhh---ccCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 018543          148 HSLRRTMEK---YSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR  223 (354)
Q Consensus       148 ~~Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~g  223 (354)
                      ..|+-.|..   -...+.++..||-+..+..+||+|+. .|++|.|.........+-++...-..+++..+..+++.+.|
T Consensus       254 TEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeG  333 (439)
T KOG0739|consen  254 TEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEG  333 (439)
T ss_pred             HHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCC
Confidence            234444432   12344455567777899999999995 69998888777777766555444456788999999997765

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.49  E-value=3e-12  Score=115.38  Aligned_cols=219  Identities=14%  Similarity=0.155  Sum_probs=119.3

Q ss_pred             CCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc-----CCCccccccc
Q 018543           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID-----AGSRNIDLEL   86 (354)
Q Consensus        12 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~   86 (354)
                      |..++||++++..+...+-.....|++|.|+||+||||+++++++.+ ....+.+..... ..+.     |..|+.-.+.
T Consensus         3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~   80 (337)
T TIGR02030         3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL-PEIKAVAGCPFN-SSPSDPEMMCEEVRIRVDS   80 (337)
T ss_pred             ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh-cccccccCCCCC-CCCCCccccChHHhhhhhc
Confidence            78899999999877655545556789999999999999999999854 221111110000 0000     1111110000


Q ss_pred             -ccc----ccCceeeeCC--CCCCCcchhHHHHHHHHHHhcCCCC---CCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543           87 -TTL----SSANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPID---TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (354)
Q Consensus        87 -~~~----~~~~~i~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~  156 (354)
                       .+.    ......++..  .+........+...+   .......   .-...+..++++||++.+++..|+.|+..|++
T Consensus        81 ~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l---~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~  157 (337)
T TIGR02030        81 QEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERAL---TEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAAS  157 (337)
T ss_pred             ccccccccCCCCcCCCCCCCcccceecchhHhhHh---hcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHh
Confidence             000    0000112111  111111111122111   1111100   00124457999999999999999999999976


Q ss_pred             cc-----------CceeEEEEecC-C-C-cccHHHhhhcc-eeeecCCCH-HHHHHHHHHHHH-----------------
Q 018543          157 YS-----------ASCRLILCCNS-S-S-KVTEAIRSRCL-NIRINSPTE-EQIVKVLEFIAK-----------------  203 (354)
Q Consensus       157 ~~-----------~~~~~Il~~~~-~-~-~l~~~l~sR~~-~i~~~~~~~-~~~~~~L~~~~~-----------------  203 (354)
                      ..           ...+|+++++. + + .+.+++.+|+. .+.+.++.. ++..+++++...                 
T Consensus       158 g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~  237 (337)
T TIGR02030       158 GWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQE  237 (337)
T ss_pred             CCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhh
Confidence            31           12334444443 3 2 68899999986 477777765 665666655211                 


Q ss_pred             ------------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH
Q 018543          204 ------------KEGLQLPSGFATRLAEKS---NR-SLRRAILSFETC  235 (354)
Q Consensus       204 ------------~~~~~i~~~~l~~i~~~s---~g-d~R~ai~~L~~~  235 (354)
                                  -..+.++++.++++++.+   +. +.|..+.++..+
T Consensus       238 ~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raA  285 (337)
T TIGR02030       238 ALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAA  285 (337)
T ss_pred             cCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence                        024567777777776632   32 467777776644

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=3.2e-13  Score=128.19  Aligned_cols=181  Identities=20%  Similarity=0.290  Sum_probs=117.7

Q ss_pred             ccCCCCCCCcccCHHHHHHHHHHHhc----------CCC-Ce-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543            6 KYRPKTLDQVIVHQDIAQNLKKLVTE----------QDC-PH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (354)
Q Consensus         6 kyrP~~~~~~~g~~~~~~~l~~~l~~----------~~~-~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~   73 (354)
                      |..-.+++|+-|-++++..+...++-          |-. .. +|||||||||||.+|+++|.++-              
T Consensus       665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------------  730 (953)
T KOG0736|consen  665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------------  730 (953)
T ss_pred             CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------------
Confidence            34445899999999999999988752          211 22 99999999999999999998751              


Q ss_pred             cccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH--------
Q 018543           74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------  145 (354)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--------  145 (354)
                                +++-.+..++.+.+.-   | .....+|++++...+.         .+.|||+||+|.+.++        
T Consensus       731 ----------L~FlSVKGPELLNMYV---G-qSE~NVR~VFerAR~A---------~PCVIFFDELDSlAP~RG~sGDSG  787 (953)
T KOG0736|consen  731 ----------LNFLSVKGPELLNMYV---G-QSEENVREVFERARSA---------APCVIFFDELDSLAPNRGRSGDSG  787 (953)
T ss_pred             ----------eeEEeecCHHHHHHHh---c-chHHHHHHHHHHhhcc---------CCeEEEeccccccCccCCCCCCcc
Confidence                      1222333333332211   1 1223588888765554         3489999999999543        


Q ss_pred             -----HHHHHHHHHhhcc----CceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHH-HHHHHHHHHHHcCCCCCHH
Q 018543          146 -----AQHSLRRTMEKYS----ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQ-IVKVLEFIAKKEGLQLPSG  212 (354)
Q Consensus       146 -----~~~~Ll~~le~~~----~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~-~~~~L~~~~~~~~~~i~~~  212 (354)
                           ....|+.-|+..+    ..+-+|.+||.|+-+.|++.+  |+. .+++.+..+++ ..++|+..-++  +.++++
T Consensus       788 GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLded  865 (953)
T KOG0736|consen  788 GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDED  865 (953)
T ss_pred             ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCC
Confidence                 4456666665443    345566688899999999998  454 46777765544 44555554444  334443


Q ss_pred             -HHHHHHHHcCCCH
Q 018543          213 -FATRLAEKSNRSL  225 (354)
Q Consensus       213 -~l~~i~~~s~gd~  225 (354)
                       .+..||+.+.-++
T Consensus       866 VdL~eiAk~cp~~~  879 (953)
T KOG0736|consen  866 VDLVEIAKKCPPNM  879 (953)
T ss_pred             cCHHHHHhhCCcCC
Confidence             3777888765443

>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]

Probab=99.48  E-value=7e-11  Score=107.57  Aligned_cols=211  Identities=16%  Similarity=0.198  Sum_probs=158.8

Q ss_pred             CCceEEEEeCCCcCC-HHHHHHHHHHHhhcc-CceeEEEEecCCC---cccHHHhhh--cceeeecCCCHHHHHHHHHHH
Q 018543          129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYS-ASCRLILCCNSSS---KVTEAIRSR--CLNIRINSPTEEQIVKVLEFI  201 (354)
Q Consensus       129 ~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~-~~~~~Il~~~~~~---~l~~~l~sR--~~~i~~~~~~~~~~~~~L~~~  201 (354)
                      ++.++++|..++... .+....+......+| ....+++.++..+   +..+.+.+-  +.++.+.+++..++.+|+...
T Consensus        73 ~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~  152 (334)
T COG1466          73 GEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKR  152 (334)
T ss_pred             cCCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHH
Confidence            455899999987764 555666666666666 5555555555544   233333332  668999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHH
Q 018543          202 AKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY--PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVR  277 (354)
Q Consensus       202 ~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~--~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  277 (354)
                      +.+.|+.+++++++.++...+||++.+.+.++.++....  .++.++  .......+..++++++.+..    ++..++.
T Consensus       153 ~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~----g~~~~a~  228 (334)
T COG1466         153 AKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLK----GDVKKAL  228 (334)
T ss_pred             HHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHC----CCHHHHH
Confidence            999999999999999999999999999999998887643  355444  23333445567899999988    6777888


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHH------------------------------------hCCHHHHHHHHHHHHHHh
Q 018543          278 GKLYELLLNCVPPVVVLKRLLYELLK------------------------------------RLDAEIKHEVCHWAAYYE  321 (354)
Q Consensus       278 ~~~~~l~~~~~~~~~il~~l~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~  321 (354)
                      ..+++++.+|++|..|+..+.+++..                                    +++.+...+.+..+.+.+
T Consensus       229 ~~l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~l~~~l~~l~~~d  308 (334)
T COG1466         229 RLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQLLKALRLLAQLD  308 (334)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            99999999999999988765555431                                    245555566778888999


Q ss_pred             hHhhCCCC-hhHhHHHHHHHHHH
Q 018543          322 HKMRRGNK-AIFHLEAFVAKFMS  343 (354)
Q Consensus       322 ~~l~~~~~-~~l~l~~~i~~~~~  343 (354)
                      ..++.|.. +.+.++.++.+++.
T Consensus       309 ~~~K~~~~d~~~~l~~~l~~~~~  331 (334)
T COG1466         309 YQIKTGYGDPVWALELFLLRLLE  331 (334)
T ss_pred             HHHhcCCccchHHHHHHHHHHhh
Confidence            99998885 57778888877765

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.47  E-value=3.1e-12  Score=123.93  Aligned_cols=201  Identities=17%  Similarity=0.171  Sum_probs=130.3

Q ss_pred             ccCCCCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543            6 KYRPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus         6 kyrP~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      +++..++++++|+....+.+...++.  ....+++|+|++||||+++|+++...........+.++|..+.         
T Consensus       189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~---------  259 (534)
T TIGR01817       189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS---------  259 (534)
T ss_pred             ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC---------
Confidence            45667899999998777766665543  2333499999999999999999987543223233333332111         


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHH-HHHHH----HHhc--CCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQ-EVIKE----MAKN--RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~-~~~~~----~~~~--~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~  156 (354)
                                            + ..+. +++..    +...  .........+..+++|||++.|+...|..|++.+++
T Consensus       260 ----------------------~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~  316 (534)
T TIGR01817       260 ----------------------E-TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQE  316 (534)
T ss_pred             ----------------------H-HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhc
Confidence                                  0 0000 00000    0000  000000123446899999999999999999999976


Q ss_pred             cc-----------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCCC--HHHHHHHHHHHHHH----cC--CC
Q 018543          157 YS-----------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIAKK----EG--LQ  208 (354)
Q Consensus       157 ~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~~L~~~~~~----~~--~~  208 (354)
                      ..           .++++|++|+...       .+.+.+..|+.  .|.+||+.  .+++..++.+.+.+    .+  +.
T Consensus       317 ~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~  396 (534)
T TIGR01817       317 GEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLT  396 (534)
T ss_pred             CcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCC
Confidence            32           1367888776542       45667777764  57788886  56666655554432    22  57


Q ss_pred             CCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 018543          209 LPSGFATRLAEKS-NRSLRRAILSFETCRVQ  238 (354)
Q Consensus       209 i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~  238 (354)
                      +++++++.+..+. .||+|+..+.++.++..
T Consensus       397 ~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~  427 (534)
T TIGR01817       397 ITPSAIRVLMSCKWPGNVRELENCLERTATL  427 (534)
T ss_pred             CCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence            8999999999974 99999999999987754

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.47  E-value=1.2e-12  Score=128.54  Aligned_cols=196  Identities=17%  Similarity=0.254  Sum_probs=126.7

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhc-----------CCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      .+.....+|+++.|.+..+..+...+..           +..|. ++|+||||+|||++++++++++..+   .+.+++.
T Consensus       143 ~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~---f~~is~~  219 (644)
T PRK10733        143 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGS  219 (644)
T ss_pred             CchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC---EEEEehH
Confidence            3334456788999988887777665531           23343 9999999999999999999876221   1111111


Q ss_pred             cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-------
Q 018543           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------  144 (354)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------  144 (354)
                      .+.                     +..   .+ .....+++.+.....         ..+.||||||+|.+..       
T Consensus       220 ~~~---------------------~~~---~g-~~~~~~~~~f~~a~~---------~~P~IifIDEiD~l~~~r~~~~~  265 (644)
T PRK10733        220 DFV---------------------EMF---VG-VGASRVRDMFEQAKK---------AAPCIIFIDEIDAVGRQRGAGLG  265 (644)
T ss_pred             HhH---------------------Hhh---hc-ccHHHHHHHHHHHHh---------cCCcEEEehhHhhhhhccCCCCC
Confidence            110                     000   01 111235555544332         2347999999998732       


Q ss_pred             -------HHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543          145 -------EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (354)
Q Consensus       145 -------~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~  212 (354)
                             ...+.|+..|+...  ..+.+|.+||.++.+.+++.+  |+ ..+.|+.|+.++...+++.++.+..+.- +.
T Consensus       266 g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~  344 (644)
T PRK10733        266 GGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DI  344 (644)
T ss_pred             CCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cC
Confidence                   13345555565443  356778889999999999986  77 4799999999999999998886544321 22


Q ss_pred             HHHHHHHHcCC----CHHHHHHHHHHHHh
Q 018543          213 FATRLAEKSNR----SLRRAILSFETCRV  237 (354)
Q Consensus       213 ~l~~i~~~s~g----d~R~ai~~L~~~~~  237 (354)
                      .+..+++.+.|    |+...++.....+.
T Consensus       345 d~~~la~~t~G~sgadl~~l~~eAa~~a~  373 (644)
T PRK10733        345 DAAIIARGTPGFSGADLANLVNEAALFAA  373 (644)
T ss_pred             CHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Confidence            35668888777    77777776554443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.47  E-value=1.5e-12  Score=104.04  Aligned_cols=138  Identities=30%  Similarity=0.424  Sum_probs=89.2

Q ss_pred             ccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (354)
Q Consensus        16 ~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   95 (354)
                      +|++.....+...+......+++++||||+|||++++.+++.+.......+.++                          
T Consensus         1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~--------------------------   54 (151)
T cd00009           1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN--------------------------   54 (151)
T ss_pred             CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe--------------------------
Confidence            367778888888887655567999999999999999999997742221111111                          


Q ss_pred             eeCCCCCCCcchhHHHHHHH----HHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc------cCceeEEE
Q 018543           96 ELSPSDAGFQDRYVVQEVIK----EMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------SASCRLIL  165 (354)
Q Consensus        96 ~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~------~~~~~~Il  165 (354)
                         ........  .......    .......    ...+..++++||++.+.......++..++..      ...+.+|+
T Consensus        55 ---~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~  125 (151)
T cd00009          55 ---ASDLLEGL--VVAELFGHFLVRLLFELA----EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIG  125 (151)
T ss_pred             ---hhhhhhhh--HHHHHhhhhhHhHHHHhh----ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEE
Confidence               11100000  0000000    0000000    1235689999999999888888888888775      35678888


Q ss_pred             EecCCC--cccHHHhhhc-ceeeecC
Q 018543          166 CCNSSS--KVTEAIRSRC-LNIRINS  188 (354)
Q Consensus       166 ~~~~~~--~l~~~l~sR~-~~i~~~~  188 (354)
                      +++...  .+.+.+.+|| ..+.+++
T Consensus       126 ~~~~~~~~~~~~~~~~r~~~~i~~~~  151 (151)
T cd00009         126 ATNRPLLGDLDRALYDRLDIRIVIPL  151 (151)
T ss_pred             ecCccccCCcChhHHhhhccEeecCC
Confidence            888877  7889999999 6676653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.46  E-value=3.3e-12  Score=118.22  Aligned_cols=179  Identities=22%  Similarity=0.286  Sum_probs=105.1

Q ss_pred             CCC-cccCHHHHHHHHHHHhc-------C---------CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543           12 LDQ-VIVHQDIAQNLKKLVTE-------Q---------DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (354)
Q Consensus        12 ~~~-~~g~~~~~~~l~~~l~~-------~---------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~   74 (354)
                      +++ ++||+++++.+...+..       +         ...++||+||||||||++|+.+|+.+..+-   +.+++..  
T Consensus        69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf---~~id~~~--  143 (412)
T PRK05342         69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF---AIADATT--  143 (412)
T ss_pred             HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc---eecchhh--
Confidence            443 79999999888665521       1         124599999999999999999998762211   1111110  


Q ss_pred             ccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH----------
Q 018543           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------  144 (354)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----------  144 (354)
                                            +....+...   .+...+..+........ ....+.||+|||+|.++.          
T Consensus       144 ----------------------l~~~gyvG~---d~e~~l~~l~~~~~~~~-~~a~~gIi~iDEIdkl~~~~~~~~~~~d  197 (412)
T PRK05342        144 ----------------------LTEAGYVGE---DVENILLKLLQAADYDV-EKAQRGIVYIDEIDKIARKSENPSITRD  197 (412)
T ss_pred             ----------------------cccCCcccc---hHHHHHHHHHHhccccH-HHcCCcEEEEechhhhccccCCCCcCCC
Confidence                                  111111111   12222222211111100 123558999999999975          


Q ss_pred             ----HHHHHHHHHHhhcc-----C--------ceeEEEEecC--------C-----------------------------
Q 018543          145 ----EAQHSLRRTMEKYS-----A--------SCRLILCCNS--------S-----------------------------  170 (354)
Q Consensus       145 ----~~~~~Ll~~le~~~-----~--------~~~~Il~~~~--------~-----------------------------  170 (354)
                          ..|++|+++||...     .        ...+|.++|-        .                             
T Consensus       198 ~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~  277 (412)
T PRK05342        198 VSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRT  277 (412)
T ss_pred             cccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccch
Confidence                38999999997421     0        1112222221        0                             


Q ss_pred             -C--------------cccHHHhhhcc-eeeecCCCHHHHHHHHHH----HH-------HHcCC--CCCHHHHHHHHHHc
Q 018543          171 -S--------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEF----IA-------KKEGL--QLPSGFATRLAEKS  221 (354)
Q Consensus       171 -~--------------~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~----~~-------~~~~~--~i~~~~l~~i~~~s  221 (354)
                       .              .+.|.+..|+. ++.|.+++.+++.+++..    ..       ...++  .++++++++|++.+
T Consensus       278 ~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~  357 (412)
T PRK05342        278 EGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA  357 (412)
T ss_pred             hHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence             0              13566666774 689999999999999972    22       23344  57899999999964

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=3.3e-12  Score=115.50  Aligned_cols=151  Identities=15%  Similarity=0.274  Sum_probs=100.1

Q ss_pred             CCCCCCCcccCHHHHHHHHH----HHhc-------CCCC--eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543            8 RPKTLDQVIVHQDIAQNLKK----LVTE-------QDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (354)
Q Consensus         8 rP~~~~~~~g~~~~~~~l~~----~l~~-------~~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~   74 (354)
                      +|.+|+.++-.+++++.+..    +++.       |+.=  .+|||||||||||+++-|+|+.| ..+            
T Consensus       196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-~yd------------  262 (457)
T KOG0743|consen  196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-NYD------------  262 (457)
T ss_pred             CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-CCc------------
Confidence            57899999887776655554    4432       2211  29999999999999999999976 111            


Q ss_pred             ccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---HH------
Q 018543           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---RE------  145 (354)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---~~------  145 (354)
                                         .-.+..+......  .++.++-   .+        .+..||+|+++|.--   ..      
T Consensus       263 -------------------IydLeLt~v~~n~--dLr~LL~---~t--------~~kSIivIEDIDcs~~l~~~~~~~~~  310 (457)
T KOG0743|consen  263 -------------------IYDLELTEVKLDS--DLRHLLL---AT--------PNKSILLIEDIDCSFDLRERRKKKKE  310 (457)
T ss_pred             -------------------eEEeeeccccCcH--HHHHHHH---hC--------CCCcEEEEeecccccccccccccccc
Confidence                               0111111222221  2444432   21        244799999998641   10      


Q ss_pred             ---------HHHHHHHHHhhcc----CceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHH
Q 018543          146 ---------AQHSLRRTMEKYS----ASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAK  203 (354)
Q Consensus       146 ---------~~~~Ll~~le~~~----~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~  203 (354)
                               ....||..+.-.-    ...++||+||+.+++.|+|.++.   .+|++..-+.+..+....+.+.
T Consensus       311 ~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~  384 (457)
T KOG0743|consen  311 NFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG  384 (457)
T ss_pred             cccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence                     2235777776542    34579999999999999999954   3699999999999888887764

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=2.1e-12  Score=124.16  Aligned_cols=177  Identities=21%  Similarity=0.302  Sum_probs=120.6

Q ss_pred             CCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      .+++++.|.+.++..++..+..           + +.+ .+||+||||||||.+|+++|.+...   ..+.+.+.     
T Consensus       239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~---~fi~v~~~-----  310 (494)
T COG0464         239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS---RFISVKGS-----  310 (494)
T ss_pred             cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC---eEEEeeCH-----
Confidence            4788888888888777776631           2 233 3999999999999999999985411   11111110     


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-----------HH
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE  145 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------~~  145 (354)
                                         ++.....+ .....+++++......         .+.||||||+|.+-           ..
T Consensus       311 -------------------~l~sk~vG-esek~ir~~F~~A~~~---------~p~iiFiDEiDs~~~~r~~~~~~~~~r  361 (494)
T COG0464         311 -------------------ELLSKWVG-ESEKNIRELFEKARKL---------APSIIFIDEIDSLASGRGPSEDGSGRR  361 (494)
T ss_pred             -------------------HHhccccc-hHHHHHHHHHHHHHcC---------CCcEEEEEchhhhhccCCCCCchHHHH
Confidence                               11111111 1123466666554433         34799999999872           24


Q ss_pred             HHHHHHHHHh--hccCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 018543          146 AQHSLRRTME--KYSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQ-LPSGFATRLAE  219 (354)
Q Consensus       146 ~~~~Ll~~le--~~~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~-i~~~~l~~i~~  219 (354)
                      ..+.|+..|.  +...++.+|.+||.++.+.+++.+  |+. .+.|++|+.++..++++......+.. .++-.++.+++
T Consensus       362 ~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~  441 (494)
T COG0464         362 VVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAE  441 (494)
T ss_pred             HHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHH
Confidence            6677787774  334567788899999999999999  875 69999999999999999988765554 23456777777


Q ss_pred             HcCC
Q 018543          220 KSNR  223 (354)
Q Consensus       220 ~s~g  223 (354)
                      .+.|
T Consensus       442 ~t~~  445 (494)
T COG0464         442 ITEG  445 (494)
T ss_pred             HhcC
Confidence            6655

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=3.3e-13  Score=113.34  Aligned_cols=179  Identities=18%  Similarity=0.289  Sum_probs=120.8

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVK   67 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~   67 (354)
                      ||-+|.-...+..|+-|-++.+..++..++.           | .+|. +|+|||||+|||.+|+++|+.-   +.-   
T Consensus       165 mm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dac---  238 (435)
T KOG0729|consen  165 MMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DAC---  238 (435)
T ss_pred             EEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---Cce---
Confidence            4556666667899999999988888887752           3 2333 9999999999999999999742   111   


Q ss_pred             cccccccccCCCccccccccccccCceeeeCCCCC----CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-
Q 018543           68 VENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA----GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-  142 (354)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-  142 (354)
                                                ++....++.    -......+|+++.....         .+..+||+||+|.+ 
T Consensus       239 --------------------------firvigselvqkyvgegarmvrelf~mart---------kkaciiffdeidaig  283 (435)
T KOG0729|consen  239 --------------------------FIRVIGSELVQKYVGEGARMVRELFEMART---------KKACIIFFDEIDAIG  283 (435)
T ss_pred             --------------------------EEeehhHHHHHHHhhhhHHHHHHHHHHhcc---------cceEEEEeecccccc
Confidence                                      111111110    01111246676654332         23479999999876 


Q ss_pred             ----------CHHHHHHHHHHHhh-----ccCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHH
Q 018543          143 ----------SREAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKK  204 (354)
Q Consensus       143 ----------~~~~~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~  204 (354)
                                +.+.|..++.++.+     +..+..+.+.||.++.+.|++.+-.   ..++|..|+-+....+++-+++.
T Consensus       284 garfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaks  363 (435)
T KOG0729|consen  284 GARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS  363 (435)
T ss_pred             CccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccc
Confidence                      34577788888754     4578899999999999999998754   35999999988888888765544


Q ss_pred             cCCCCCHHH-HHHHHHHcC
Q 018543          205 EGLQLPSGF-ATRLAEKSN  222 (354)
Q Consensus       205 ~~~~i~~~~-l~~i~~~s~  222 (354)
                      ..+  +.+. .+.|++.|.
T Consensus       364 msv--erdir~ellarlcp  380 (435)
T KOG0729|consen  364 MSV--ERDIRFELLARLCP  380 (435)
T ss_pred             ccc--ccchhHHHHHhhCC
Confidence            333  2222 444555543

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=2.1e-12  Score=114.68  Aligned_cols=157  Identities=24%  Similarity=0.408  Sum_probs=105.7

Q ss_pred             CCCcccCHHHHHHHHHHHhc--------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543           12 LDQVIVHQDIAQNLKKLVTE--------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        12 ~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      |+++|-++.+.+.+......        ..+.+++||||||+|||.+|+-+|+.-           |             
T Consensus       354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-----------G-------------  409 (630)
T KOG0742|consen  354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-----------G-------------  409 (630)
T ss_pred             cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-----------C-------------
Confidence            89999999888888776532        334459999999999999999999852           1             


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---------CHHHHHHHHHHH
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SREAQHSLRRTM  154 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~~~~~Ll~~l  154 (354)
                      +++..++.+++-     ..|......+-++++.....        .+.-++||||+|.+         +.....+|-.+|
T Consensus       410 lDYA~mTGGDVA-----PlG~qaVTkiH~lFDWakkS--------~rGLllFIDEADAFLceRnktymSEaqRsaLNAlL  476 (630)
T KOG0742|consen  410 LDYAIMTGGDVA-----PLGAQAVTKIHKLFDWAKKS--------RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL  476 (630)
T ss_pred             CceehhcCCCcc-----ccchHHHHHHHHHHHHHhhc--------ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHH
Confidence            111112221110     01111112344555443322        23478999999875         233333333333


Q ss_pred             ---hhccCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHc
Q 018543          155 ---EKYSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKE  205 (354)
Q Consensus       155 ---e~~~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~  205 (354)
                         -+.+....+++.+|.|..+..++-+|+. +++|+.|..++..++|..++++.
T Consensus       477 fRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky  531 (630)
T KOG0742|consen  477 FRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY  531 (630)
T ss_pred             HHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence               3456678899999999999999999994 89999999999999998877653

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=7.2e-13  Score=112.64  Aligned_cols=161  Identities=20%  Similarity=0.322  Sum_probs=111.8

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~   69 (354)
                      -+||-.-.++.|+-|.+..++.++..++-           | ++|. +++||+||+|||.+|+++|+.--.   ..+.+-
T Consensus       175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA---TFlRvv  251 (440)
T KOG0726|consen  175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA---TFLRVV  251 (440)
T ss_pred             ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch---hhhhhh
Confidence            35666667899999999999999988852           3 2333 999999999999999999984311   111111


Q ss_pred             cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------
Q 018543           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------  143 (354)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------  143 (354)
                      +.+..                    -.+.    | .....+|++++......         +.|+||||+|.+.      
T Consensus       252 GseLi--------------------Qkyl----G-dGpklvRqlF~vA~e~a---------pSIvFiDEIdAiGtKRyds  297 (440)
T KOG0726|consen  252 GSELI--------------------QKYL----G-DGPKLVRELFRVAEEHA---------PSIVFIDEIDAIGTKRYDS  297 (440)
T ss_pred             hHHHH--------------------HHHh----c-cchHHHHHHHHHHHhcC---------CceEEeehhhhhccccccC
Confidence            11000                    0011    1 11135777776554443         3799999999873      


Q ss_pred             -----HHHHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHH
Q 018543          144 -----REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEF  200 (354)
Q Consensus       144 -----~~~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~  200 (354)
                           .+.|..++.++.+.     ...+.+|++||..+.+.|++.+-.   ..|.|+.|+....++++.-
T Consensus       298 ~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I  367 (440)
T KOG0726|consen  298 NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI  367 (440)
T ss_pred             CCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEE
Confidence                 35677788877653     356899999999999999998754   3599999998888777653

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.42  E-value=3e-12  Score=110.73  Aligned_cols=203  Identities=18%  Similarity=0.275  Sum_probs=110.6

Q ss_pred             cccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc--------c-
Q 018543           15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL--------E-   85 (354)
Q Consensus        15 ~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-   85 (354)
                      ++|.+...+.|..++.++...+++++||.|+|||++++.+.+.+...+...+++......  ........        . 
T Consensus         1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~l   78 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEES--NESSLRSFIEETSLADEL   78 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBS--HHHHHHHHHHHHHHHCHC
T ss_pred             CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccch--hhhHHHHHHHHHHHHHHH
Confidence            578888899999999988777899999999999999999998763322222222211000  00000000        0 


Q ss_pred             ---cc-ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------HHHHHHHHHHHh
Q 018543           86 ---LT-TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------REAQHSLRRTME  155 (354)
Q Consensus        86 ---~~-~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------~~~~~~Ll~~le  155 (354)
                         .. .........+.. .........+..+++.+....        ..-+|+|||++.+.      +.....|...++
T Consensus        79 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~--------~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~  149 (234)
T PF01637_consen   79 SEALGISIPSITLEKISK-DLSEDSFSALERLLEKLKKKG--------KKVIIVIDEFQYLAIASEEDKDFLKSLRSLLD  149 (234)
T ss_dssp             HHHHHHHCCTSTTEEEEC-TS-GG-G--HHHHHHHHHHCH--------CCEEEEEETGGGGGBCTTTTHHHHHHHHHHHH
T ss_pred             HHHHhhhcccccchhhhh-cchhhHHHHHHHHHHHHHhcC--------CcEEEEEecHHHHhhcccchHHHHHHHHHHHh
Confidence               00 000000000000 011111123555555554422        23799999998887      455667777776


Q ss_pred             h--ccCceeEEEEecCCC------cccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCH
Q 018543          156 K--YSASCRLILCCNSSS------KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL--PSGFATRLAEKSNRSL  225 (354)
Q Consensus       156 ~--~~~~~~~Il~~~~~~------~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i--~~~~l~~i~~~s~gd~  225 (354)
                      .  ...+..+|++++..+      .-..++..|+..+.+++++.++..+++.....+. ..+  +++.++.+...++|.+
T Consensus       150 ~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P  228 (234)
T PF01637_consen  150 SLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNP  228 (234)
T ss_dssp             H----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-H
T ss_pred             hccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence            6  234566666665532      1223466788889999999999999999877655 544  8999999999999998


Q ss_pred             HHHH
Q 018543          226 RRAI  229 (354)
Q Consensus       226 R~ai  229 (354)
                      +...
T Consensus       229 ~~l~  232 (234)
T PF01637_consen  229 RYLQ  232 (234)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7643

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=2.9e-12  Score=116.56  Aligned_cols=178  Identities=23%  Similarity=0.262  Sum_probs=123.0

Q ss_pred             cccCCCCCCCcccCHHHHHHHHHHHhc------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccc
Q 018543            5 DKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~   72 (354)
                      +.-++..++|+.|.+.+++.+...+--            .....+|+.||||+|||.+++++|.+....           
T Consensus       145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~at-----------  213 (428)
T KOG0740|consen  145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGAT-----------  213 (428)
T ss_pred             ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcce-----------
Confidence            345677899999999988888776531            112239999999999999999999875221           


Q ss_pred             ccccCCCccccccccccccCceeeeCCCCCC----CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH----
Q 018543           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAG----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----  144 (354)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----  144 (354)
                      |                     ..+.++...    ......++.+++- +..        .++.|+||||+|.+-.    
T Consensus       214 f---------------------f~iSassLtsK~~Ge~eK~vralf~v-Ar~--------~qPsvifidEidslls~Rs~  263 (428)
T KOG0740|consen  214 F---------------------FNISASSLTSKYVGESEKLVRALFKV-ARS--------LQPSVIFIDEIDSLLSKRSD  263 (428)
T ss_pred             E---------------------eeccHHHhhhhccChHHHHHHHHHHH-HHh--------cCCeEEEechhHHHHhhcCC
Confidence            1                     111121111    1112345555543 322        3558999999998721    


Q ss_pred             -------HHH-HHHHHHH---hhccCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543          145 -------EAQ-HSLRRTM---EKYSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (354)
Q Consensus       145 -------~~~-~~Ll~~l---e~~~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~  212 (354)
                             ... +.|+...   -.+..++.+|.+||.+..+.++++.|++ ++.++.|+.+....++++.+.+.+..+.+.
T Consensus       264 ~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~  343 (428)
T KOG0740|consen  264 NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDL  343 (428)
T ss_pred             cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHH
Confidence                   111 2233332   1223467788889999999999999986 688999999999999999998887788889


Q ss_pred             HHHHHHHHcCC
Q 018543          213 FATRLAEKSNR  223 (354)
Q Consensus       213 ~l~~i~~~s~g  223 (354)
                      .+..+++.+.|
T Consensus       344 d~~~l~~~Teg  354 (428)
T KOG0740|consen  344 DISLLAKVTEG  354 (428)
T ss_pred             HHHHHHHHhcC
Confidence            99999997665

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.41  E-value=1.6e-11  Score=110.59  Aligned_cols=222  Identities=16%  Similarity=0.192  Sum_probs=125.3

Q ss_pred             ccCCC-CCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543            6 KYRPK-TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (354)
Q Consensus         6 kyrP~-~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
                      +-+|. .|++++||++++..|...+-+..+..++|.||+|+||||+++.+++.+.+...-.  -+  .|. +.+.+..+.
T Consensus         9 ~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~--~~--pf~-~~p~~p~~~   83 (350)
T CHL00081          9 KERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVK--DD--PFN-SHPSDPELM   83 (350)
T ss_pred             ccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccC--CC--CCC-CCCCChhhh
Confidence            34554 7999999999999998887777777799999999999999999988664322110  00  111 011100000


Q ss_pred             --cccccc-----------cCceeeeCC--CCCCCcchhHHHHHHHHHHhcCCCCCC---CCCCceEEEEeCCCcCCHHH
Q 018543           85 --ELTTLS-----------SANHVELSP--SDAGFQDRYVVQEVIKEMAKNRPIDTK---GKRGFKVLVLNEVDKLSREA  146 (354)
Q Consensus        85 --~~~~~~-----------~~~~i~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~viiiDE~d~l~~~~  146 (354)
                        .+....           ....+.+..  .+........+...   +.........   ...+..++++||++.+++..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~a---l~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~  160 (350)
T CHL00081         84 SDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKA---LTEGVKAFEPGLLAKANRGILYVDEVNLLDDHL  160 (350)
T ss_pred             chhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHH---hhcCcccccCCeeeecCCCEEEecChHhCCHHH
Confidence              000000           000011110  11111111111111   1111110000   13455799999999999999


Q ss_pred             HHHHHHHHhhcc-----------CceeEEEEecCC-C--cccHHHhhhcc-eeeecCCC-HHHHHHHHHHHHH-------
Q 018543          147 QHSLRRTMEKYS-----------ASCRLILCCNSS-S--KVTEAIRSRCL-NIRINSPT-EEQIVKVLEFIAK-------  203 (354)
Q Consensus       147 ~~~Ll~~le~~~-----------~~~~~Il~~~~~-~--~l~~~l~sR~~-~i~~~~~~-~~~~~~~L~~~~~-------  203 (354)
                      |..|+..|++..           ...+|+++++.. .  .+.+++.+|+. .+.+..|+ .++..+++++...       
T Consensus       161 Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~  240 (350)
T CHL00081        161 VDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQE  240 (350)
T ss_pred             HHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhh
Confidence            999999997621           123455554432 2  68999999985 57787776 4666666654321       


Q ss_pred             ----------------------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHH
Q 018543          204 ----------------------KEGLQLPSGFATRLAEKS---N-RSLRRAILSFETC  235 (354)
Q Consensus       204 ----------------------~~~~~i~~~~l~~i~~~s---~-gd~R~ai~~L~~~  235 (354)
                                            -..+.++++.++++++.+   + -+.|..+.++..+
T Consensus       241 ~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raA  298 (350)
T CHL00081        241 FREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAA  298 (350)
T ss_pred             hhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHH
Confidence                                  024567777777776643   2 2577777766643

>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.41  E-value=1.5e-11  Score=105.18  Aligned_cols=105  Identities=26%  Similarity=0.282  Sum_probs=88.9

Q ss_pred             ceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC------------CCcccHHHhhhcceeeecCCCHHHHHHHH
Q 018543          131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS------------SSKVTEAIRSRCLNIRINSPTEEQIVKVL  198 (354)
Q Consensus       131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~L  198 (354)
                      +.|+||||+|+|+-+....|.+.+|+-- ...+|+.||.            ++.++-.+.+|..+|.-.|++.+++.++|
T Consensus       289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~-~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL  367 (454)
T KOG2680|consen  289 PGVLFIDEVHMLDIECFSFLNRALENDM-APIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL  367 (454)
T ss_pred             cceEEEeeehhhhhHHHHHHHHHhhhcc-CcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence            6799999999999999999999998732 1334445542            34688999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHH
Q 018543          199 EFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCR  236 (354)
Q Consensus       199 ~~~~~~~~~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~  236 (354)
                      +.+|++|++.+++++++.+.... ..++|-|++++-...
T Consensus       368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~  406 (454)
T KOG2680|consen  368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAAS  406 (454)
T ss_pred             HhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            99999999999999999998864 458999999987543

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.40  E-value=1.5e-11  Score=111.39  Aligned_cols=110  Identities=20%  Similarity=0.187  Sum_probs=84.6

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhc--ceeeecCC
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSP  189 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~  189 (354)
                      +..+++|||++.|+...|..|++++++..           .++++|++++...       .+.+.+..|+  ..|.+||+
T Consensus        93 ~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpL  172 (329)
T TIGR02974        93 DGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPL  172 (329)
T ss_pred             CCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCch
Confidence            44789999999999999999999997632           3467888877542       4667888887  46888888


Q ss_pred             C--HHHHHHHHHHHH----HHcC----CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC
Q 018543          190 T--EEQIVKVLEFIA----KKEG----LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       190 ~--~~~~~~~L~~~~----~~~~----~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~~  239 (354)
                      .  .+++..++.+.+    .+.|    ..+++++++.+..+. .||+|+..+.++.++...
T Consensus       173 ReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~  233 (329)
T TIGR02974       173 RERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH  233 (329)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence            7  466666555543    3333    358999999999976 999999999999887653

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=5.7e-12  Score=119.45  Aligned_cols=184  Identities=22%  Similarity=0.315  Sum_probs=119.9

Q ss_pred             CCCCCcccCHHHHHHHHHHHh-----------cCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543           10 KTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~-----------~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~   77 (354)
                      .+|.|+.|.++++..+...+.           .+++|. ++++||||+|||.+|+++|.+.--|   ...          
T Consensus       147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP---Ff~----------  213 (596)
T COG0465         147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP---FFS----------  213 (596)
T ss_pred             cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC---cee----------
Confidence            589999999999988887764           246666 9999999999999999999865211   111          


Q ss_pred             CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-------------
Q 018543           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------------  144 (354)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------------  144 (354)
                                 .+..+++++..    ......+|+++.+.....|         .|++|||+|....             
T Consensus       214 -----------iSGS~FVemfV----GvGAsRVRdLF~qAkk~aP---------~IIFIDEiDAvGr~Rg~g~Gggnder  269 (596)
T COG0465         214 -----------ISGSDFVEMFV----GVGASRVRDLFEQAKKNAP---------CIIFIDEIDAVGRQRGAGLGGGNDER  269 (596)
T ss_pred             -----------ccchhhhhhhc----CCCcHHHHHHHHHhhccCC---------CeEEEehhhhcccccCCCCCCCchHH
Confidence                       12222233221    1122458888877555433         7999999998742             


Q ss_pred             -HHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018543          145 -EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (354)
Q Consensus       145 -~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~  218 (354)
                       ...|.|+-.|+-...  .+.++..||.++-+++++.+  |+ ..|..+.|+......+|+-++....+.- +-.+..++
T Consensus       270 EQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~-~Vdl~~iA  348 (596)
T COG0465         270 EQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAE-DVDLKKIA  348 (596)
T ss_pred             HHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCC-cCCHHHHh
Confidence             244566666665543  34444456667777788876  33 4688999999999999997766544431 12244477


Q ss_pred             HHcCC----CHHHHHHH
Q 018543          219 EKSNR----SLRRAILS  231 (354)
Q Consensus       219 ~~s~g----d~R~ai~~  231 (354)
                      +.+.|    |+-..+|.
T Consensus       349 r~tpGfsGAdL~nl~NE  365 (596)
T COG0465         349 RGTPGFSGADLANLLNE  365 (596)
T ss_pred             hhCCCcccchHhhhHHH
Confidence            76554    44444444

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.37  E-value=2.3e-11  Score=111.99  Aligned_cols=189  Identities=21%  Similarity=0.215  Sum_probs=110.0

Q ss_pred             cccCHHHHHHHHHHHh-------c---CC--------CCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543           15 VIVHQDIAQNLKKLVT-------E---QD--------CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus        15 ~~g~~~~~~~l~~~l~-------~---~~--------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      ++||+++++.+...+.       .   ..        ..++||+||||+|||++|+++|+.+..+-   ..+        
T Consensus        79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf---~~~--------  147 (413)
T TIGR00382        79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF---AIA--------  147 (413)
T ss_pred             ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe---EEe--------
Confidence            4899999988876651       1   11        23699999999999999999998652110   000        


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH------------
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------  144 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------------  144 (354)
                              +..        .+.+..+-..   .....+.......+..+ ....+.+|+|||+|.+++            
T Consensus       148 --------da~--------~L~~~gyvG~---d~e~~L~~~~~~~~~~l-~~a~~gIV~lDEIdkl~~~~~~~s~~~dvs  207 (413)
T TIGR00382       148 --------DAT--------TLTEAGYVGE---DVENILLKLLQAADYDV-EKAQKGIIYIDEIDKISRKSENPSITRDVS  207 (413)
T ss_pred             --------chh--------hccccccccc---cHHHHHHHHHHhCcccH-HhcccceEEecccchhchhhcccccccccc
Confidence                    100        0111111111   12222222222111111 112446999999999876            


Q ss_pred             --HHHHHHHHHHhhcc-------------CceeEEEEecCC---------------------------C-----------
Q 018543          145 --EAQHSLRRTMEKYS-------------ASCRLILCCNSS---------------------------S-----------  171 (354)
Q Consensus       145 --~~~~~Ll~~le~~~-------------~~~~~Il~~~~~---------------------------~-----------  171 (354)
                        +.|+.|+++||...             .++.+|.|+|-.                           .           
T Consensus       208 g~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~  287 (413)
T TIGR00382       208 GEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADL  287 (413)
T ss_pred             chhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHH
Confidence              68999999996321             123344444430                           0           


Q ss_pred             ------------cccHHHhhhcc-eeeecCCCHHHHHHHHHHH----HH-------HcCC--CCCHHHHHHHHHHcC---
Q 018543          172 ------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFI----AK-------KEGL--QLPSGFATRLAEKSN---  222 (354)
Q Consensus       172 ------------~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~----~~-------~~~~--~i~~~~l~~i~~~s~---  222 (354)
                                  .+.|.+..|+. ++.|.|++.+++.+++..-    .+       ..|+  .+++++++.|++.+-   
T Consensus       288 ~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~  367 (413)
T TIGR00382       288 LRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERK  367 (413)
T ss_pred             HHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCC
Confidence                        14466667774 6889999999999998752    22       1243  578999999999642   


Q ss_pred             CCHHHHHHHHHH
Q 018543          223 RSLRRAILSFET  234 (354)
Q Consensus       223 gd~R~ai~~L~~  234 (354)
                      -.+|..-..++.
T Consensus       368 ~GAR~Lr~iie~  379 (413)
T TIGR00382       368 TGARGLRSIVEG  379 (413)
T ss_pred             CCchHHHHHHHH
Confidence            224444444443

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.37  E-value=2.4e-10  Score=106.10  Aligned_cols=153  Identities=13%  Similarity=0.179  Sum_probs=91.7

Q ss_pred             CcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc
Q 018543           14 QVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN   93 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (354)
                      .++|++++++.+...+..+.  |++|.||||+|||++|++++....... ......+. |                    
T Consensus        21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~-f--------------------   76 (498)
T PRK13531         21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTR-F--------------------   76 (498)
T ss_pred             hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccC-cceeeeee-e--------------------
Confidence            46889999998888877664  599999999999999999998652211 00000000 0                    


Q ss_pred             eeeeCCCC-CCCcchhHHHHHH--HHHHh-cCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---------Cc
Q 018543           94 HVELSPSD-AGFQDRYVVQEVI--KEMAK-NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------AS  160 (354)
Q Consensus        94 ~i~~~~~~-~~~~~~~~i~~~~--~~~~~-~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---------~~  160 (354)
                         ..+.+ .|.   ..+....  ..+.. ...    .-....++|+||+..+++..|++|+..|++..         -.
T Consensus        77 ---ttp~DLfG~---l~i~~~~~~g~f~r~~~G----~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp  146 (498)
T PRK13531         77 ---STPEEVFGP---LSIQALKDEGRYQRLTSG----YLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIP  146 (498)
T ss_pred             ---cCcHHhcCc---HHHhhhhhcCchhhhcCC----ccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCC
Confidence               00111 010   0011110  00100 000    01123599999999999999999999996532         12


Q ss_pred             eeEEEEecCC-C---cccHHHhhhcc-eeeecCCC-HHHHHHHHHH
Q 018543          161 CRLILCCNSS-S---KVTEAIRSRCL-NIRINSPT-EEQIVKVLEF  200 (354)
Q Consensus       161 ~~~Il~~~~~-~---~l~~~l~sR~~-~i~~~~~~-~~~~~~~L~~  200 (354)
                      .+++++++++ .   ...+++.+|+. .+.+++|+ .++..++|..
T Consensus       147 ~rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~  192 (498)
T PRK13531        147 MRLLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS  192 (498)
T ss_pred             CcEEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence            4465555542 2   24458999985 48888887 4555777754

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.36  E-value=1.9e-11  Score=126.84  Aligned_cols=115  Identities=12%  Similarity=0.088  Sum_probs=77.8

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-----HHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhh
Q 018543          110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS  179 (354)
Q Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-----~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~s  179 (354)
                      ++.+++.+....         |.||+|||+|.+...     ..+.|+..|...     ..++.+|.+||.|+.++|++.+
T Consensus      1721 Ir~lFelARk~S---------PCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLR 1791 (2281)
T CHL00206       1721 ITLQFELAKAMS---------PCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIA 1791 (2281)
T ss_pred             HHHHHHHHHHCC---------CeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcC
Confidence            566665544433         489999999999743     245666777532     3456778888999999999998


Q ss_pred             --hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHcCCC-HHHHHHHHH
Q 018543          180 --RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG--FATRLAEKSNRS-LRRAILSFE  233 (354)
Q Consensus       180 --R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~--~l~~i~~~s~gd-~R~ai~~L~  233 (354)
                        |+. .|.++.|+..+..+++.......|+.++++  .++.+|+.+.|- .++.-+++.
T Consensus      1792 PGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206       1792 PNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred             CCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence              663 688988888787777765444456665543  378888887763 333334433

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=5.6e-12  Score=113.98  Aligned_cols=205  Identities=18%  Similarity=0.187  Sum_probs=127.2

Q ss_pred             CCcccCHHHHHHHHHHHh----cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc--ccccccccccccCCCccccccc
Q 018543           13 DQVIVHQDIAQNLKKLVT----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGSRNIDLEL   86 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~----~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   86 (354)
                      ..+.|.+.-...++.|+.    .+....+.+.|-||+|||.+...+...+-+....  .++++|....  .+..    -+
T Consensus       150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~--~~~a----iF  223 (529)
T KOG2227|consen  150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT--EASA----IF  223 (529)
T ss_pred             CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc--chHH----HH
Confidence            456676666666666654    3455569999999999999998776655433322  1233322111  0000    00


Q ss_pred             cccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc---cCceeE
Q 018543           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---SASCRL  163 (354)
Q Consensus        87 ~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~---~~~~~~  163 (354)
                      ..+    +-.+. ++.....  .-++....+.....    .....-++++||.|.|....+..|+.++|-+   ..+..+
T Consensus       224 ~kI----~~~~~-q~~~s~~--~~~~~~~~~~~h~~----q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iL  292 (529)
T KOG2227|consen  224 KKI----FSSLL-QDLVSPG--TGMQHLEKFEKHTK----QSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIIL  292 (529)
T ss_pred             HHH----HHHHH-HHhcCCc--hhHHHHHHHHHHHh----cccceEEEEechhhHHhhcccceeeeehhcccCCcceeee
Confidence            000    00000 0000000  01222222222111    1224568999999999888888888887653   456778


Q ss_pred             EEEecCCC---cccHHHhhhc----ceeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH---cCCCHHHHHHHH
Q 018543          164 ILCCNSSS---KVTEAIRSRC----LNIRINSPTEEQIVKVLEFIAKKEGLQL-PSGFATRLAEK---SNRSLRRAILSF  232 (354)
Q Consensus       164 Il~~~~~~---~l~~~l~sR~----~~i~~~~~~~~~~~~~L~~~~~~~~~~i-~~~~l~~i~~~---s~gd~R~ai~~L  232 (354)
                      |.++|..+   ++++.|..|+    ..+.|+|++.+++.+||+..+..+.... -+.+++.+|+.   ..||+|+|+..+
T Consensus       293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~  372 (529)
T KOG2227|consen  293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVC  372 (529)
T ss_pred             eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHH
Confidence            88889875   7889999976    4799999999999999999888765543 34577777774   579999999988


Q ss_pred             HH
Q 018543          233 ET  234 (354)
Q Consensus       233 ~~  234 (354)
                      +.
T Consensus       373 R~  374 (529)
T KOG2227|consen  373 RR  374 (529)
T ss_pred             HH
Confidence            73

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=2.1e-11  Score=118.62  Aligned_cols=203  Identities=16%  Similarity=0.297  Sum_probs=141.8

Q ss_pred             CCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543            9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus         9 P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      --.++-++|.++.++.+.+.+.....++-+|.|+||+|||.++..+|..+...+....-.+.+.+.         .++..
T Consensus       166 ~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s---------LD~g~  236 (786)
T COG0542         166 EGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS---------LDLGS  236 (786)
T ss_pred             cCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE---------ecHHH
Confidence            345777999998888888888776666688999999999999999999886544322111111111         01000


Q ss_pred             cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---------HHHHHHHHHHHhhccC
Q 018543           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRRTMEKYSA  159 (354)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~~~Ll~~le~~~~  159 (354)
                      +       .....+.......++.+++++....         .-|+||||+|.+-         -++.|.|...|..  .
T Consensus       237 L-------vAGakyRGeFEeRlk~vl~ev~~~~---------~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--G  298 (786)
T COG0542         237 L-------VAGAKYRGEFEERLKAVLKEVEKSK---------NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--G  298 (786)
T ss_pred             H-------hccccccCcHHHHHHHHHHHHhcCC---------CeEEEEechhhhcCCCcccccccchhhhhHHHHhc--C
Confidence            0       1112223333345666666665432         4799999998772         3366777777764  4


Q ss_pred             ceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Q 018543          160 SCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNRS------  224 (354)
Q Consensus       160 ~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~s~gd------  224 (354)
                      ..++|.+|+..+     .-.+++.+|++.|....|+.++...+|+....+    .++.++++++.+.+..|...      
T Consensus       299 eL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~L  378 (786)
T COG0542         299 ELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFL  378 (786)
T ss_pred             CeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCC
Confidence            477788777554     456899999999999999999999999876654    47899999999999987543      


Q ss_pred             HHHHHHHHHHHHhc
Q 018543          225 LRRAILSFETCRVQ  238 (354)
Q Consensus       225 ~R~ai~~L~~~~~~  238 (354)
                      +.+||.+++.+++.
T Consensus       379 PDKAIDLiDeA~a~  392 (786)
T COG0542         379 PDKAIDLLDEAGAR  392 (786)
T ss_pred             CchHHHHHHHHHHH
Confidence            34799999987754

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.34  E-value=4.2e-11  Score=117.68  Aligned_cols=219  Identities=12%  Similarity=0.083  Sum_probs=120.0

Q ss_pred             CCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc-ccccccc-cccccCCCcccccccccc
Q 018543           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE-KVKVENK-TWKIDAGSRNIDLELTTL   89 (354)
Q Consensus        12 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~   89 (354)
                      |.+++||++++..+...+-.....++||.||+|+|||+++++++..+-..... ...+.|. ...  |+.|..|..+...
T Consensus         3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~--~~~~~~~~~~~~~   80 (633)
T TIGR02442         3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP--EEWCEECRRKYRP   80 (633)
T ss_pred             cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc--cccChhhhhcccc
Confidence            77999999999988877777777779999999999999999999855100000 0000000 000  1111111111111


Q ss_pred             cc---CceeeeCCC--CCCCcchhHHHHHHHHHHhcCCCCCC---CCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---
Q 018543           90 SS---ANHVELSPS--DAGFQDRYVVQEVIKEMAKNRPIDTK---GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (354)
Q Consensus        90 ~~---~~~i~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---  158 (354)
                      ..   ..++.+...  .........+...+   .........   ......+++|||++.|++..|+.|+..|++..   
T Consensus        81 ~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l---~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v  157 (633)
T TIGR02442        81 SEQRPVPFVNLPLGATEDRVVGSLDIERAL---REGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRV  157 (633)
T ss_pred             cccCCCCeeeCCCCCcHHHcCCcccHHHHh---hcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEE
Confidence            11   112222111  00000101111111   110000000   12345799999999999999999999998641   


Q ss_pred             ----------CceeEEEEecCCC-cccHHHhhhcc-eeeecCCC-HHHHHHHHHHHHH----------------------
Q 018543          159 ----------ASCRLILCCNSSS-KVTEAIRSRCL-NIRINSPT-EEQIVKVLEFIAK----------------------  203 (354)
Q Consensus       159 ----------~~~~~Il~~~~~~-~l~~~l~sR~~-~i~~~~~~-~~~~~~~L~~~~~----------------------  203 (354)
                                .++.+|.++|..+ .+.+++.+|+. .+.++++. .++..+++.+...                      
T Consensus       158 ~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~  237 (633)
T TIGR02442       158 EREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNR  237 (633)
T ss_pred             EECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHH
Confidence                      2344555544322 57899999985 46666554 3443344332110                      


Q ss_pred             -------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHH
Q 018543          204 -------KEGLQLPSGFATRLAEKS---N-RSLRRAILSFETC  235 (354)
Q Consensus       204 -------~~~~~i~~~~l~~i~~~s---~-gd~R~ai~~L~~~  235 (354)
                             ...+.++++.++.+++.+   + ..+|..+.++..+
T Consensus       238 i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~A  280 (633)
T TIGR02442       238 IARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAA  280 (633)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence                   124678888888887754   2 2477777776644

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.33  E-value=4e-11  Score=109.13  Aligned_cols=108  Identities=20%  Similarity=0.329  Sum_probs=78.2

Q ss_pred             CceEEEEeCCCcCC------------HHHHHHHHHHHhhcc--------CceeEEEEec------CCCcccHHHhhhcc-
Q 018543          130 GFKVLVLNEVDKLS------------REAQHSLRRTMEKYS--------ASCRLILCCN------SSSKVTEAIRSRCL-  182 (354)
Q Consensus       130 ~~~viiiDE~d~l~------------~~~~~~Ll~~le~~~--------~~~~~Il~~~------~~~~l~~~l~sR~~-  182 (354)
                      +..||+|||+|.+.            ...|++||+++|...        .+..+.|+|.      .++.++|.+.-|+- 
T Consensus       249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi  328 (443)
T PRK05201        249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI  328 (443)
T ss_pred             cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence            56799999999884            347999999998632        2223444433      35579999999985 


Q ss_pred             eeeecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh
Q 018543          183 NIRINSPTEEQIVKVLEF----I-------AKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETCRV  237 (354)
Q Consensus       183 ~i~~~~~~~~~~~~~L~~----~-------~~~~~~--~i~~~~l~~i~~~s--------~gd~R~ai~~L~~~~~  237 (354)
                      ++.+.+++.+++.++|..    .       ...+|+  .+++++++.||+.+        +-.+|..-..++.+..
T Consensus       329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~  404 (443)
T PRK05201        329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE  404 (443)
T ss_pred             EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence            689999999999999933    2       223565  57799999999864        3457777777776543

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.32  E-value=6.9e-12  Score=103.70  Aligned_cols=46  Identities=26%  Similarity=0.513  Sum_probs=37.5

Q ss_pred             CCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        12 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      |+|++||+.+++.+.-+...+  .|+|++||||+|||++|+.+.. ++.
T Consensus         2 f~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~-lLP   47 (206)
T PF01078_consen    2 FSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPS-LLP   47 (206)
T ss_dssp             TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHH-CS-
T ss_pred             hhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHH-hCC
Confidence            789999999999998877653  4699999999999999999997 443

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.32  E-value=2.4e-11  Score=107.76  Aligned_cols=185  Identities=16%  Similarity=0.196  Sum_probs=108.3

Q ss_pred             cCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccc
Q 018543            7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (354)
Q Consensus         7 yrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
                      |.|..=.+.+-+++....+..++..++  |++|.||||||||++++.+|..+..+-   +.+.+....          ..
T Consensus        39 ~~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l~~~~---~rV~~~~~l----------~~  103 (327)
T TIGR01650        39 HVPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARLNWPC---VRVNLDSHV----------SR  103 (327)
T ss_pred             CCCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHHCCCe---EEEEecCCC----------Ch
Confidence            445444556667777777777776554  599999999999999999999873221   111110000          00


Q ss_pred             cccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh----------
Q 018543           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK----------  156 (354)
Q Consensus        87 ~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~----------  156 (354)
                      ..+.....+.+  .+ +..    ..+    + ...++.. ......++++||+|..+++.++.|..+||.          
T Consensus       104 ~DliG~~~~~l--~~-g~~----~~~----f-~~GpL~~-A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~  170 (327)
T TIGR01650       104 IDLVGKDAIVL--KD-GKQ----ITE----F-RDGILPW-ALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQN  170 (327)
T ss_pred             hhcCCCceeec--cC-Ccc----eeE----E-ecCcchh-HHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCc
Confidence            00000000000  00 000    000    0 0000000 012336799999999999999999999973          


Q ss_pred             ----ccCceeEEEEecCCC------------cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 018543          157 ----YSASCRLILCCNSSS------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQ--LPSGFATRL  217 (354)
Q Consensus       157 ----~~~~~~~Il~~~~~~------------~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~--i~~~~l~~i  217 (354)
                          +.+..++|.++|...            .+.++..+|+. ++.+..|+.++-.++|.....  ++.  .+++.++.+
T Consensus       171 ~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~--~~~~~~~~~i~~~m  248 (327)
T TIGR01650       171 RVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAK--GFDDTEGKDIINAM  248 (327)
T ss_pred             eEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhcc--CCCccchHHHHHHH
Confidence                123456677777532            47899999996 468999999999999986542  221  124455555


Q ss_pred             HHHc
Q 018543          218 AEKS  221 (354)
Q Consensus       218 ~~~s  221 (354)
                      ++..
T Consensus       249 V~la  252 (327)
T TIGR01650       249 VRVA  252 (327)
T ss_pred             HHHH
Confidence            5543

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.32  E-value=6e-11  Score=107.96  Aligned_cols=109  Identities=18%  Similarity=0.306  Sum_probs=78.3

Q ss_pred             CCceEEEEeCCCcCC------------HHHHHHHHHHHhhcc--------CceeEEEEec------CCCcccHHHhhhcc
Q 018543          129 RGFKVLVLNEVDKLS------------REAQHSLRRTMEKYS--------ASCRLILCCN------SSSKVTEAIRSRCL  182 (354)
Q Consensus       129 ~~~~viiiDE~d~l~------------~~~~~~Ll~~le~~~--------~~~~~Il~~~------~~~~l~~~l~sR~~  182 (354)
                      .+..||+|||+|.+.            ...|++||+++|...        .+..+.|+|.      .++.++|.+.-|+-
T Consensus       246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P  325 (441)
T TIGR00390       246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP  325 (441)
T ss_pred             HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence            356899999999884            237999999998632        1222333332      35679999999985


Q ss_pred             -eeeecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh
Q 018543          183 -NIRINSPTEEQIVKVLEF----I-------AKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETCRV  237 (354)
Q Consensus       183 -~i~~~~~~~~~~~~~L~~----~-------~~~~~~--~i~~~~l~~i~~~s--------~gd~R~ai~~L~~~~~  237 (354)
                       ++.+.+++.+++.++|..    .       ...+|+  .++++++..||+.+        +-.+|..-..++....
T Consensus       326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~  402 (441)
T TIGR00390       326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLE  402 (441)
T ss_pred             eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence             689999999999999932    1       233565  56799999999865        4457777777776543

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.31  E-value=8.6e-11  Score=108.20  Aligned_cols=166  Identities=19%  Similarity=0.283  Sum_probs=100.0

Q ss_pred             CCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccccc
Q 018543           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS   91 (354)
Q Consensus        12 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (354)
                      ++++++.++..+.+...+..+  ++++|+||||+|||++|+.+|..+.+... ...++...+.   ++      +   +-
T Consensus       174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~-~~~v~~VtFH---ps------y---SY  238 (459)
T PRK11331        174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKA-PQRVNMVQFH---QS------Y---SY  238 (459)
T ss_pred             hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcc-cceeeEEeec---cc------c---cH
Confidence            567777788888787777654  45999999999999999999987643211 1011100000   00      0   00


Q ss_pred             Ccee-eeCCCCCCCcc-hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-HHHHHHHHHhh------------
Q 018543           92 ANHV-ELSPSDAGFQD-RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-AQHSLRRTMEK------------  156 (354)
Q Consensus        92 ~~~i-~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-~~~~Ll~~le~------------  156 (354)
                      .+.+ .+.+...+... ...+.++++.....+       .++.++||||+++.+.+ ....++..||.            
T Consensus       239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p-------~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~  311 (459)
T PRK11331        239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQP-------EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLT  311 (459)
T ss_pred             HHHhcccCCCCCCeEecCchHHHHHHHHHhcc-------cCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeee
Confidence            0111 12222222111 012334444333221       24589999999998855 35666666652            


Q ss_pred             ----------ccCceeEEEEecCCC----cccHHHhhhcceeeecC-CCHHHHHHHHH
Q 018543          157 ----------YSASCRLILCCNSSS----KVTEAIRSRCLNIRINS-PTEEQIVKVLE  199 (354)
Q Consensus       157 ----------~~~~~~~Il~~~~~~----~l~~~l~sR~~~i~~~~-~~~~~~~~~L~  199 (354)
                                .|.+..+|.+.|..+    .+..++++|+..+++.| ++...+.+++.
T Consensus       312 y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~  369 (459)
T PRK11331        312 YSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL  369 (459)
T ss_pred             ccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH
Confidence                      135677888888876    58899999999999987 45556666654

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=7e-11  Score=102.11  Aligned_cols=140  Identities=17%  Similarity=0.323  Sum_probs=89.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC-C---CcchhHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-G---FQDRYVVQE  112 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~---~~~~~~i~~  112 (354)
                      +|++||||||||++.+++|..+--.      ..++.                 .....++++.... .   ...+..+..
T Consensus       180 iLlhGPPGTGKTSLCKaLaQkLSIR------~~~~y-----------------~~~~liEinshsLFSKWFsESgKlV~k  236 (423)
T KOG0744|consen  180 ILLHGPPGTGKTSLCKALAQKLSIR------TNDRY-----------------YKGQLIEINSHSLFSKWFSESGKLVAK  236 (423)
T ss_pred             EEEeCCCCCChhHHHHHHHHhheee------ecCcc-----------------ccceEEEEehhHHHHHHHhhhhhHHHH
Confidence            8999999999999999999987211      11110                 0122344443211 0   001123455


Q ss_pred             HHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH---------------HHHHHHHHHHhhccC--ceeEEEEecCCCcccH
Q 018543          113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------------EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTE  175 (354)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~---------------~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~  175 (354)
                      +++.+.+....    .+..-.++|||++.+..               .+.|+|+..|+....  ++.+..++|-.+.+..
T Consensus       237 mF~kI~ELv~d----~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~  312 (423)
T KOG0744|consen  237 MFQKIQELVED----RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDV  312 (423)
T ss_pred             HHHHHHHHHhC----CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHH
Confidence            55555444332    34456889999998732               257889888876543  3333334444568999


Q ss_pred             HHhhhcc-eeeecCCCHHHHHHHHHHHHH
Q 018543          176 AIRSRCL-NIRINSPTEEQIVKVLEFIAK  203 (354)
Q Consensus       176 ~l~sR~~-~i~~~~~~~~~~~~~L~~~~~  203 (354)
                      ++.+|.. +..+.+|+...+.++++.-..
T Consensus       313 AfVDRADi~~yVG~Pt~~ai~~Ilkscie  341 (423)
T KOG0744|consen  313 AFVDRADIVFYVGPPTAEAIYEILKSCIE  341 (423)
T ss_pred             HhhhHhhheeecCCccHHHHHHHHHHHHH
Confidence            9999997 477799999999999987654

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=99.30  E-value=1.6e-10  Score=114.51  Aligned_cols=198  Identities=16%  Similarity=0.155  Sum_probs=122.5

Q ss_pred             CCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
                      .+|++++|.....+.+...++.  ....+++|+|++||||+++|+++.+.........+.++|..+.             
T Consensus       322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~-------------  388 (638)
T PRK11388        322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYP-------------  388 (638)
T ss_pred             ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCC-------------
Confidence            3799999987666555544432  2223499999999999999999977542222223333332111             


Q ss_pred             ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCC---CCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc------
Q 018543           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP---IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------  158 (354)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------  158 (354)
                                        ....-.+++........   ...-...+...++|||++.|+...|..|++++++..      
T Consensus       389 ------------------~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~  450 (638)
T PRK11388        389 ------------------DEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDS  450 (638)
T ss_pred             ------------------hHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCC
Confidence                              00000111110000000   000011334689999999999999999999997632      


Q ss_pred             -----CceeEEEEecCCC-------cccHHHhhhc--ceeeecCCCH--HHHHHHHHHHHHH----c--CCCCCHHHHHH
Q 018543          159 -----ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAKK----E--GLQLPSGFATR  216 (354)
Q Consensus       159 -----~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~~~--~~~~~~L~~~~~~----~--~~~i~~~~l~~  216 (354)
                           .++++|++|+...       .+.+.+..|.  ..|.+||+..  +++...+...+.+    .  .+.+++++++.
T Consensus       451 ~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~  530 (638)
T PRK11388        451 RRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR  530 (638)
T ss_pred             CceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence                 1456777776542       3445555554  3577888764  3555555554432    2  24689999999


Q ss_pred             HHHHc-CCCHHHHHHHHHHHHhc
Q 018543          217 LAEKS-NRSLRRAILSFETCRVQ  238 (354)
Q Consensus       217 i~~~s-~gd~R~ai~~L~~~~~~  238 (354)
                      +.++. .||+|+..+.++.++..
T Consensus       531 L~~y~WPGNvreL~~~l~~~~~~  553 (638)
T PRK11388        531 LVSYRWPGNDFELRSVIENLALS  553 (638)
T ss_pred             HHcCCCCChHHHHHHHHHHHHHh
Confidence            99987 99999999999987754

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.29  E-value=4.7e-10  Score=93.27  Aligned_cols=191  Identities=18%  Similarity=0.252  Sum_probs=127.7

Q ss_pred             cccCCCCCCCcccCHHHHHHHH----HHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            5 DKYRPKTLDQVIVHQDIAQNLK----KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~~~~~l~----~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      ..+.|..+.+++|-+..++.|-    +.++.-...|+||+|..|+|||++++++.+++...+..                
T Consensus        52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr----------------  115 (287)
T COG2607          52 PDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR----------------  115 (287)
T ss_pred             CCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe----------------
Confidence            4566678889999766655443    34433334459999999999999999999887544432                


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-CHHHHHHHHHHH----h
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-SREAQHSLRRTM----E  155 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-~~~~~~~Ll~~l----e  155 (354)
                                   .+++..++..     .+-.+++.+...        ..+-|||+|+...= ..++..+|...|    |
T Consensus       116 -------------LVEV~k~dl~-----~Lp~l~~~Lr~~--------~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve  169 (287)
T COG2607         116 -------------LVEVDKEDLA-----TLPDLVELLRAR--------PEKFILFCDDLSFEEGDDAYKALKSALEGGVE  169 (287)
T ss_pred             -------------EEEEcHHHHh-----hHHHHHHHHhcC--------CceEEEEecCCCCCCCchHHHHHHHHhcCCcc
Confidence                         2444433322     233444443332        34568888986432 344566677777    4


Q ss_pred             hccCceeEEEEecCCCcccHH----------------------Hhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543          156 KYSASCRLILCCNSSSKVTEA----------------------IRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (354)
Q Consensus       156 ~~~~~~~~Il~~~~~~~l~~~----------------------l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~  212 (354)
                      ..|.++.|..++|..+-+.+.                      +-+|+ ..+.|.|++.++-.+++...++..++.++++
T Consensus       170 ~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e  249 (287)
T COG2607         170 GRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDE  249 (287)
T ss_pred             cCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence            567788777777766533322                      23454 4689999999999999999999999999765


Q ss_pred             H-----HHHHHHHcCCCHHHHHHHHHHHHh
Q 018543          213 F-----ATRLAEKSNRSLRRAILSFETCRV  237 (354)
Q Consensus       213 ~-----l~~i~~~s~gd~R~ai~~L~~~~~  237 (354)
                      .     ++....+.+.+-|.|....+.++-
T Consensus       250 ~l~~eAl~WAt~rg~RSGR~A~QF~~~~~g  279 (287)
T COG2607         250 ELHAEALQWATTRGGRSGRVAWQFIRDLAG  279 (287)
T ss_pred             HHHHHHHHHHHhcCCCccHhHHHHHHHHHh
Confidence            4     444445667788888888776653

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=99.29  E-value=1.9e-10  Score=110.75  Aligned_cols=203  Identities=16%  Similarity=0.176  Sum_probs=122.3

Q ss_pred             CCCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccc
Q 018543            9 PKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (354)
Q Consensus         9 P~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
                      ..+|++++|.....+.+...++.  ....+++|+|++||||+++|+++-..-.......+.++|..+.            
T Consensus       200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~------------  267 (520)
T PRK10820        200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP------------  267 (520)
T ss_pred             cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC------------
Confidence            45899999987655555444432  2223499999999999999999755322122222333332111            


Q ss_pred             cccccCceee--eCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc------
Q 018543           87 TTLSSANHVE--LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------  158 (354)
Q Consensus        87 ~~~~~~~~i~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------  158 (354)
                          . ..++  +.....+..... .       .....  .-...+...++|||++.|+...|..|++.+++..      
T Consensus       268 ----~-~~~e~elFG~~~~~~~~~-~-------~~~~g--~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~  332 (520)
T PRK10820        268 ----D-DVVESELFGHAPGAYPNA-L-------EGKKG--FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE  332 (520)
T ss_pred             ----H-HHHHHHhcCCCCCCcCCc-c-------cCCCC--hhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCC
Confidence                0 0000  000000000000 0       00000  0001234689999999999999999999997631      


Q ss_pred             -----CceeEEEEecCCC-------cccHHHhhhc--ceeeecCCCH--HHHHHH----HHHHHHHcCC---CCCHHHHH
Q 018543          159 -----ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKV----LEFIAKKEGL---QLPSGFAT  215 (354)
Q Consensus       159 -----~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~~~--~~~~~~----L~~~~~~~~~---~i~~~~l~  215 (354)
                           .++++|++|+...       .+.+.+..|.  ..|++||+.+  +++...    +.+.+.+.|.   .+++++++
T Consensus       333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~  412 (520)
T PRK10820        333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNT  412 (520)
T ss_pred             CcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence                 2457777776542       3556788885  4688888864  345443    3444444443   68999999


Q ss_pred             HHHHH-cCCCHHHHHHHHHHHHhc
Q 018543          216 RLAEK-SNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       216 ~i~~~-s~gd~R~ai~~L~~~~~~  238 (354)
                      .+..+ ..||+|+..+.++.++..
T Consensus       413 ~L~~y~WPGNvreL~nvl~~a~~~  436 (520)
T PRK10820        413 VLTRYGWPGNVRQLKNAIYRALTQ  436 (520)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHHh
Confidence            99997 899999999999987754

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=99.29  E-value=3.6e-10  Score=102.44  Aligned_cols=196  Identities=15%  Similarity=0.137  Sum_probs=121.6

Q ss_pred             CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      .+++++|.....+.+.+.++.  ....+++|+|++||||+++|+++-..-...+...+.++|....              
T Consensus         4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~--------------   69 (326)
T PRK11608          4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN--------------   69 (326)
T ss_pred             ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCC--------------
Confidence            567899987666655555543  2223499999999999999999875321122222333332111              


Q ss_pred             cccCceeeeCCCCCCCcchhHHH-HHHHHHH----h--cCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---
Q 018543           89 LSSANHVELSPSDAGFQDRYVVQ-EVIKEMA----K--NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (354)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~i~-~~~~~~~----~--~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---  158 (354)
                                       + ..+. +++....    .  ......-...+...++|||++.|+...|..|++.+++..   
T Consensus        70 -----------------~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~  131 (326)
T PRK11608         70 -----------------E-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELER  131 (326)
T ss_pred             -----------------H-HHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEe
Confidence                             0 0000 0000000    0  000000012334689999999999999999999997532   


Q ss_pred             --------CceeEEEEecCC-------CcccHHHhhhcc--eeeecCCCH--HHHHHHHHHH----HHHcC----CCCCH
Q 018543          159 --------ASCRLILCCNSS-------SKVTEAIRSRCL--NIRINSPTE--EQIVKVLEFI----AKKEG----LQLPS  211 (354)
Q Consensus       159 --------~~~~~Il~~~~~-------~~l~~~l~sR~~--~i~~~~~~~--~~~~~~L~~~----~~~~~----~~i~~  211 (354)
                              .++++|++++..       ..+.+.+..|+.  .|.+||+..  +++..++.+.    +.+.+    ..+++
T Consensus       132 ~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~  211 (326)
T PRK11608        132 VGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTE  211 (326)
T ss_pred             CCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence                    246777777654       246677888863  688888853  4555555443    33333    25789


Q ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHhc
Q 018543          212 GFATRLAEK-SNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       212 ~~l~~i~~~-s~gd~R~ai~~L~~~~~~  238 (354)
                      ++++.+..+ ..||+|+..+.++.++..
T Consensus       212 ~al~~L~~y~WPGNvrEL~~vl~~a~~~  239 (326)
T PRK11608        212 RARETLLNYRWPGNIRELKNVVERSVYR  239 (326)
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence            999999885 589999999999987754

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.9e-10  Score=108.74  Aligned_cols=191  Identities=14%  Similarity=0.208  Sum_probs=122.8

Q ss_pred             CCCCCcccCHHHHHHHHHHHhc----------C--CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTE----------Q--DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~----------~--~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      ..++|+-|-.++++.+...+..          -  +.+. +|||||||||||.+|-++|....                 
T Consensus       664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-----------------  726 (952)
T KOG0735|consen  664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-----------------  726 (952)
T ss_pred             CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-----------------
Confidence            3688999988998888887753          1  2222 99999999999999999987430                 


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-----------HH
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE  145 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-----------~~  145 (354)
                             +.+-.+.+++.+.   .-.| .....+|+++.....         .++.|+|+||+|.+.           ..
T Consensus       727 -------~~fisvKGPElL~---KyIG-aSEq~vR~lF~rA~~---------a~PCiLFFDEfdSiAPkRGhDsTGVTDR  786 (952)
T KOG0735|consen  727 -------LRFISVKGPELLS---KYIG-ASEQNVRDLFERAQS---------AKPCILFFDEFDSIAPKRGHDSTGVTDR  786 (952)
T ss_pred             -------eeEEEecCHHHHH---HHhc-ccHHHHHHHHHHhhc---------cCCeEEEeccccccCcccCCCCCCchHH
Confidence                   0111111111110   0011 112357777765444         345899999999884           34


Q ss_pred             HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 018543          146 AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK  220 (354)
Q Consensus       146 ~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~  220 (354)
                      ..|.|+.-|+.-  -.++.++.+|+.++-+.|++.+-..   .+..+.|+..+..++|+......... ++-.++.++..
T Consensus       787 VVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~  865 (952)
T KOG0735|consen  787 VVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQK  865 (952)
T ss_pred             HHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhh
Confidence            678888888432  3445566667778888899887542   57888999999999998776543322 23457778876


Q ss_pred             cCC----CHHHHHHHHHHHHhc
Q 018543          221 SNR----SLRRAILSFETCRVQ  238 (354)
Q Consensus       221 s~g----d~R~ai~~L~~~~~~  238 (354)
                      +.|    |+...+-..+.++.+
T Consensus       866 T~g~tgADlq~ll~~A~l~avh  887 (952)
T KOG0735|consen  866 TDGFTGADLQSLLYNAQLAAVH  887 (952)
T ss_pred             cCCCchhhHHHHHHHHHHHHHH
Confidence            655    555555444544433

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=99.29  E-value=9.6e-10  Score=104.22  Aligned_cols=185  Identities=16%  Similarity=0.182  Sum_probs=113.8

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhc-------CCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVF-------GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY  108 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  108 (354)
                      -++++|-||+|||.+++.+.+.|.       .+....+.+++..+.  .+....          ..+.-..+........
T Consensus       424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~--~~~~~Y----------~~I~~~lsg~~~~~~~  491 (767)
T KOG1514|consen  424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA--SPREIY----------EKIWEALSGERVTWDA  491 (767)
T ss_pred             eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec--CHHHHH----------HHHHHhcccCcccHHH
Confidence            499999999999999999999876       222223333332221  000000          0000000000000001


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---CceeEEEEecCCC---c-ccHHHhhhc
Q 018543          109 VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---ASCRLILCCNSSS---K-VTEAIRSRC  181 (354)
Q Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---~~~~~Il~~~~~~---~-l~~~l~sR~  181 (354)
                      .+..+-..+..     -.......||+|||.|.|-...|+.|..+++-+.   ....+|.++|+.+   + +...+.||.
T Consensus       492 al~~L~~~f~~-----~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRl  566 (767)
T KOG1514|consen  492 ALEALNFRFTV-----PKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRL  566 (767)
T ss_pred             HHHHHHHhhcc-----CCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhc
Confidence            11111111221     1134567899999999998888898888887653   3455666667654   2 444667775


Q ss_pred             --ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHhc
Q 018543          182 --LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE---KSNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       182 --~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~---~s~gd~R~ai~~L~~~~~~  238 (354)
                        ..+.|.|++.+++..++..++... ..++.++++.+++   ...||.|+|+..+..++--
T Consensus       567 g~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Ei  627 (767)
T KOG1514|consen  567 GLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEI  627 (767)
T ss_pred             cceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence              579999999999999998876533 2456777777765   4579999999999977643

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=3.6e-11  Score=103.33  Aligned_cols=177  Identities=18%  Similarity=0.250  Sum_probs=110.0

Q ss_pred             CCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      .+|+.+-|-......|+..+.-           | .+|. ++||||||+|||.++++++..+-+.   .+.+..      
T Consensus       129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n---fl~v~s------  199 (388)
T KOG0651|consen  129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVN---FLKVVS------  199 (388)
T ss_pred             cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCc---eEEeeH------
Confidence            3788888888878888776631           2 3343 9999999999999999999876221   111100      


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC-----------CHH
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-----------SRE  145 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l-----------~~~  145 (354)
                                     ...+    +.+-......+|+.........         +.|+++||+|..           +.+
T Consensus       200 ---------------s~lv----~kyiGEsaRlIRemf~yA~~~~---------pciifmdeiDAigGRr~se~Ts~dre  251 (388)
T KOG0651|consen  200 ---------------SALV----DKYIGESARLIRDMFRYAREVI---------PCIIFMDEIDAIGGRRFSEGTSSDRE  251 (388)
T ss_pred             ---------------hhhh----hhhcccHHHHHHHHHHHHhhhC---------ceEEeehhhhhhccEEeccccchhHH
Confidence                           0000    0111112234677666655433         389999999875           234


Q ss_pred             HHHHHHHHHhhc-----cCceeEEEEecCCCcccHHHhhhc--c-eeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHH
Q 018543          146 AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC--L-NIRINSPTEEQIVKVLEFIAKKEG--LQLPSGFAT  215 (354)
Q Consensus       146 ~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~sR~--~-~i~~~~~~~~~~~~~L~~~~~~~~--~~i~~~~l~  215 (354)
                      .|..|..++.+.     -..+++|+++|+++.+.|++.+-.  . .+..|.|.......+++-+.+.-.  -.++.+++-
T Consensus       252 iqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaiv  331 (388)
T KOG0651|consen  252 IQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAIL  331 (388)
T ss_pred             HHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHH
Confidence            566676666442     356899999999999999998743  2 456665655555555443332211  146666666


Q ss_pred             HHHHHcCC
Q 018543          216 RLAEKSNR  223 (354)
Q Consensus       216 ~i~~~s~g  223 (354)
                      .+++..+|
T Consensus       332 K~~d~f~g  339 (388)
T KOG0651|consen  332 KLVDGFNG  339 (388)
T ss_pred             HHHhccCh
Confidence            66666655

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.27  E-value=6.7e-12  Score=102.82  Aligned_cols=159  Identities=16%  Similarity=0.274  Sum_probs=100.7

Q ss_pred             CCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccccc
Q 018543           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS   91 (354)
Q Consensus        12 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (354)
                      +..-+|..++.+.+.-.++.|..  +.++||+|+||||+.|++.. |-.++.+.+.+++.......       ++..+  
T Consensus         8 l~K~fg~~~VLkgi~l~v~~Gev--v~iiGpSGSGKSTlLRclN~-LE~~~~G~I~i~g~~~~~~~-------~~~~~--   75 (240)
T COG1126           8 LSKSFGDKEVLKGISLSVEKGEV--VVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKK-------DILKL--   75 (240)
T ss_pred             eeEEeCCeEEecCcceeEcCCCE--EEEECCCCCCHHHHHHHHHC-CcCCCCceEEECCEeccchh-------hHHHH--
Confidence            33445666667777777777766  99999999999999999986 77888898888885332000       00000  


Q ss_pred             CceeeeCCCCCCCcc-------------------hh----HHHHHHHHH-----HhcCCCCCCCC------------CCc
Q 018543           92 ANHVELSPSDAGFQD-------------------RY----VVQEVIKEM-----AKNRPIDTKGK------------RGF  131 (354)
Q Consensus        92 ~~~i~~~~~~~~~~~-------------------~~----~i~~~~~~~-----~~~~~~~~~~~------------~~~  131 (354)
                      ...+.+..+.+...+                   +.    ...++++.+     +...|..+|+.            -++
T Consensus        76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P  155 (240)
T COG1126          76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP  155 (240)
T ss_pred             HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence            000111111111111                   11    112222211     22333334432            368


Q ss_pred             eEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543          132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       132 ~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      +++++||+ ..|+|+.....+.+|.+....+...++.+|.-.+...+.+|..
T Consensus       156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadrvi  207 (240)
T COG1126         156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVI  207 (240)
T ss_pred             CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEE
Confidence            99999998 7899999999999998887777777777788888888888863

>PHA02244 ATPase-like protein

Probab=99.27  E-value=3e-10  Score=101.94  Aligned_cols=132  Identities=14%  Similarity=0.190  Sum_probs=83.2

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  102 (354)
                      ..+..+++.+.  +++|+||+|||||++|++++..+..+   .+.+++.  .          +     ......+.....
T Consensus       110 ~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg~p---fv~In~l--~----------d-----~~~L~G~i~~~g  167 (383)
T PHA02244        110 ADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALDLD---FYFMNAI--M----------D-----EFELKGFIDANG  167 (383)
T ss_pred             HHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhCCC---EEEEecC--h----------H-----HHhhcccccccc
Confidence            45556666554  39999999999999999999875221   1111100  0          0     000000000000


Q ss_pred             CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh-----------ccCceeEEEEecCC-
Q 018543          103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK-----------YSASCRLILCCNSS-  170 (354)
Q Consensus       103 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~-----------~~~~~~~Il~~~~~-  170 (354)
                      ...+    ..++..+           .+..+++|||++.++++.+..|...+++           .+.++++|+++|.. 
T Consensus       168 ~~~d----gpLl~A~-----------~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~  232 (383)
T PHA02244        168 KFHE----TPFYEAF-----------KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLG  232 (383)
T ss_pred             cccc----hHHHHHh-----------hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCc
Confidence            0000    0111111           2337999999999999999999999963           23578899998873 


Q ss_pred             ----------CcccHHHhhhcceeeecCCCH
Q 018543          171 ----------SKVTEAIRSRCLNIRINSPTE  191 (354)
Q Consensus       171 ----------~~l~~~l~sR~~~i~~~~~~~  191 (354)
                                ..+.+++++|+..++|..|+.
T Consensus       233 ~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~  263 (383)
T PHA02244        233 KGADHIYVARNKIDGATLDRFAPIEFDYDEK  263 (383)
T ss_pred             cCcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence                      368899999999999988874

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=99.26  E-value=2.6e-10  Score=108.93  Aligned_cols=203  Identities=16%  Similarity=0.140  Sum_probs=123.3

Q ss_pred             CCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
                      .+|++++|+....+.+...++.  ....+++|+|++||||+++|+.+-..-...+...+.++|..+.             
T Consensus       209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~-------------  275 (526)
T TIGR02329       209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA-------------  275 (526)
T ss_pred             cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC-------------
Confidence            4689999998877777776653  3334599999999999999999976432222222333332111             


Q ss_pred             ccccCcee--eeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-------
Q 018543           88 TLSSANHV--ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------  158 (354)
Q Consensus        88 ~~~~~~~i--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-------  158 (354)
                         . ..+  ++.....+....         ........+........++|||++.|+...|..|++.+++..       
T Consensus       276 ---e-~lleseLFG~~~gaftg---------a~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~  342 (526)
T TIGR02329       276 ---E-SLLEAELFGYEEGAFTG---------ARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGT  342 (526)
T ss_pred             ---h-hHHHHHhcCCccccccc---------ccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCC
Confidence               0 000  000000000000         000000000011334689999999999999999999997632       


Q ss_pred             ----CceeEEEEecCCC-------cccHHHhhhc--ceeeecCCCH--HHHHHHHHHHH----HHcCCCCCHHHHHH---
Q 018543          159 ----ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIA----KKEGLQLPSGFATR---  216 (354)
Q Consensus       159 ----~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~~~--~~~~~~L~~~~----~~~~~~i~~~~l~~---  216 (354)
                          .++++|++|+...       .+.+.+-.|.  ..|++||+.+  +++..+..+.+    ...++.++++++..   
T Consensus       343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~  422 (526)
T TIGR02329       343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAG  422 (526)
T ss_pred             ceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHH
Confidence                2347888777653       3444555564  4688888854  45555544443    34466788998877   


Q ss_pred             ----HHH-HcCCCHHHHHHHHHHHHhc
Q 018543          217 ----LAE-KSNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       217 ----i~~-~s~gd~R~ai~~L~~~~~~  238 (354)
                          +.. ...||+|+..+.++.++..
T Consensus       423 ~~~~L~~y~WPGNvrEL~nvier~~i~  449 (526)
T TIGR02329       423 VADPLQRYPWPGNVRELRNLVERLALE  449 (526)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence                655 4589999999999988764

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=99.25  E-value=5.4e-10  Score=107.51  Aligned_cols=202  Identities=16%  Similarity=0.148  Sum_probs=124.6

Q ss_pred             CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      .+.+++|+....+.+...++.  ....+++|+|++||||+++|+++...-...+...+.++|..+.              
T Consensus       185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~--------------  250 (509)
T PRK05022        185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP--------------  250 (509)
T ss_pred             cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC--------------
Confidence            568899998777766666654  2223499999999999999999987432222222333332111              


Q ss_pred             cccCceee--eCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc--------
Q 018543           89 LSSANHVE--LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--------  158 (354)
Q Consensus        89 ~~~~~~i~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~--------  158 (354)
                        . ..++  +.....+....          +...........+...++|||++.|+.+.|..|++.+++..        
T Consensus       251 --~-~~~e~~lfG~~~g~~~g----------a~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~  317 (509)
T PRK05022        251 --E-SLAESELFGHVKGAFTG----------AISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDR  317 (509)
T ss_pred             --h-HHHHHHhcCccccccCC----------CcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCc
Confidence              0 0000  00000000000          00000000012234679999999999999999999997532        


Q ss_pred             ---CceeEEEEecCCC-------cccHHHhhhcc--eeeecCCCH--HHHHHHHHHH----HHHcC---CCCCHHHHHHH
Q 018543          159 ---ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFI----AKKEG---LQLPSGFATRL  217 (354)
Q Consensus       159 ---~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~~L~~~----~~~~~---~~i~~~~l~~i  217 (354)
                         .++++|++|+...       .+.+.+..|..  .|++||+..  +++..+..+.    +.+.|   +.+++++++.+
T Consensus       318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L  397 (509)
T PRK05022        318 SLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL  397 (509)
T ss_pred             ceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence               2568888887653       46666777754  577888753  4555444433    33333   56899999999


Q ss_pred             HHH-cCCCHHHHHHHHHHHHhcC
Q 018543          218 AEK-SNRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       218 ~~~-s~gd~R~ai~~L~~~~~~~  239 (354)
                      .++ ..||+|+..+.++.++...
T Consensus       398 ~~y~WPGNvrEL~~~i~ra~~~~  420 (509)
T PRK05022        398 LAYDWPGNVRELEHVISRAALLA  420 (509)
T ss_pred             HhCCCCCcHHHHHHHHHHHHHhc
Confidence            886 5899999999999887653

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=99.24  E-value=5.6e-10  Score=106.62  Aligned_cols=205  Identities=15%  Similarity=0.178  Sum_probs=120.5

Q ss_pred             CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      +|++++|+....+.+...++.  ....+++|+|++||||+++|+++-..+.......             +        .
T Consensus       217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~-------------S--------~  275 (538)
T PRK15424        217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDAR-------------Q--------G  275 (538)
T ss_pred             chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhccccccc-------------C--------c
Confidence            688999998887777777653  3334599999999999999999977521100000             0        0


Q ss_pred             cccCceeeeCCCCCCCcchhHHHHHHHH----HHhc---CCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---
Q 018543           89 LSSANHVELSPSDAGFQDRYVVQEVIKE----MAKN---RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (354)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~----~~~~---~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---  158 (354)
                      .....++.+++....  +...-.+++..    +...   ....+-.......++|||++.|+...|..|++.+++..   
T Consensus       276 r~~~pfv~inCaal~--e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r  353 (538)
T PRK15424        276 KKSHPFVAVNCGAIA--ESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR  353 (538)
T ss_pred             cCCCCeEEeecccCC--hhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe
Confidence            000111222222111  00000011000    0000   00000012334689999999999999999999997632   


Q ss_pred             --------CceeEEEEecCCC-------cccHHHhhhc--ceeeecCCCH--HHHHHHHHHHHH----HcCCCCCHHHHH
Q 018543          159 --------ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEFIAK----KEGLQLPSGFAT  215 (354)
Q Consensus       159 --------~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~~~--~~~~~~L~~~~~----~~~~~i~~~~l~  215 (354)
                              .++++|++|+...       .+.+.+-.|.  ..|++||+.+  +++..+....+.    +.+..++++++.
T Consensus       354 ~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~  433 (538)
T PRK15424        354 VGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQ  433 (538)
T ss_pred             cCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence                    2357888777653       2444566665  4677788754  566555555444    356678887763


Q ss_pred             -------HHHH-HcCCCHHHHHHHHHHHHhc
Q 018543          216 -------RLAE-KSNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       216 -------~i~~-~s~gd~R~ai~~L~~~~~~  238 (354)
                             .+.. ...||+|+..|.++.++..
T Consensus       434 ~~~~a~~~L~~y~WPGNvREL~nvier~~i~  464 (538)
T PRK15424        434 GLQQCETLLLHYDWPGNVRELRNLMERLALF  464 (538)
T ss_pred             hhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence                   3333 2689999999999988764

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=3.8e-10  Score=112.22  Aligned_cols=190  Identities=20%  Similarity=0.260  Sum_probs=127.7

Q ss_pred             CCCCCcccCHHHHHHHHHHHhc------------CCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTE------------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~------------~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      .+|+++-|-+.++..|+.++-.            -..|. +||+||||+|||..|+++|..+-. +...+.+..+     
T Consensus       262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~-~~~kisffmr-----  335 (1080)
T KOG0732|consen  262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSR-GNRKISFFMR-----  335 (1080)
T ss_pred             cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcc-cccccchhhh-----
Confidence            4689999999999999987742            12344 999999999999999999986421 1111111100     


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----------H
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E  145 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~  145 (354)
                                   .+.+.+..   ..| ......+.++.+...         ..+.||++||+|+|.+           .
T Consensus       336 -------------kgaD~lsk---wvg-EaERqlrllFeeA~k---------~qPSIIffdeIdGlapvrSskqEqih~S  389 (1080)
T KOG0732|consen  336 -------------KGADCLSK---WVG-EAERQLRLLFEEAQK---------TQPSIIFFDEIDGLAPVRSSKQEQIHAS  389 (1080)
T ss_pred             -------------cCchhhcc---ccC-cHHHHHHHHHHHHhc---------cCceEEeccccccccccccchHHHhhhh
Confidence                         00000000   001 111234555544433         3457999999998843           2


Q ss_pred             HHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcc---eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 018543          146 AQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK  220 (354)
Q Consensus       146 ~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~---~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~  220 (354)
                      ....|+.+|...+.  .+.+|.+||.++.+.+++|++..   .++|+-|+.+...+++.-+-.+..-.++...+..+++.
T Consensus       390 IvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~  469 (1080)
T KOG0732|consen  390 IVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEE  469 (1080)
T ss_pred             HHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHh
Confidence            34467777765543  45566678899999999998763   69999999999999998766665667889999999999


Q ss_pred             cCCCHHHHHHH
Q 018543          221 SNRSLRRAILS  231 (354)
Q Consensus       221 s~gd~R~ai~~  231 (354)
                      +.|-.+.-+..
T Consensus       470 t~gy~gaDlka  480 (1080)
T KOG0732|consen  470 TSGYGGADLKA  480 (1080)
T ss_pred             ccccchHHHHH
Confidence            88876655443

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.22  E-value=3.6e-10  Score=102.74  Aligned_cols=199  Identities=19%  Similarity=0.192  Sum_probs=122.3

Q ss_pred             CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcC-CCCcccccccccccccCCCcccccccc
Q 018543           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFG-PGAEKVKVENKTWKIDAGSRNIDLELT   87 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
                      .+++++|.....+.+...++.  ....++|++|++|+||+.+|+.+...-.. .+...+.++|..+.             
T Consensus        76 ~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~-------------  142 (403)
T COG1221          76 ALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS-------------  142 (403)
T ss_pred             hhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC-------------
Confidence            578899976655555555543  11124999999999999999999742212 12333444443332             


Q ss_pred             ccccCceeeeCCCCCCCcchhHHHHHHHH-----HH-hcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh-----
Q 018543           88 TLSSANHVELSPSDAGFQDRYVVQEVIKE-----MA-KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK-----  156 (354)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~-----~~-~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~-----  156 (354)
                                      ...  ..-+++..     .. .......-...+...+++||++.|++..|..|+++|++     
T Consensus       143 ----------------en~--~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~r  204 (403)
T COG1221         143 ----------------ENL--QEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRR  204 (403)
T ss_pred             ----------------cCH--HHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEe
Confidence                            110  00001100     00 00000001123457899999999999999999999987     


Q ss_pred             ------ccCceeEEEEecCCC--cccH--HHhhhcc--eeeecCCCH--HHHHHHH----HHHHHHcCCCC---CHHHHH
Q 018543          157 ------YSASCRLILCCNSSS--KVTE--AIRSRCL--NIRINSPTE--EQIVKVL----EFIAKKEGLQL---PSGFAT  215 (354)
Q Consensus       157 ------~~~~~~~Il~~~~~~--~l~~--~l~sR~~--~i~~~~~~~--~~~~~~L----~~~~~~~~~~i---~~~~l~  215 (354)
                            .+.++++|++|+..-  .+..  ++..|+.  .|++||+..  +|+...+    ...+.+.+..+   +++++.
T Consensus       205 vG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~  284 (403)
T COG1221         205 VGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR  284 (403)
T ss_pred             cCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence                  345677888777653  5666  7777664  577777753  3333333    34445555543   356777


Q ss_pred             HHHHH-cCCCHHHHHHHHHHHHhcCC
Q 018543          216 RLAEK-SNRSLRRAILSFETCRVQQY  240 (354)
Q Consensus       216 ~i~~~-s~gd~R~ai~~L~~~~~~~~  240 (354)
                      .+..+ ..||+|...|.++.+++...
T Consensus       285 ~L~~y~~pGNirELkN~Ve~~~~~~~  310 (403)
T COG1221         285 ALLAYDWPGNIRELKNLVERAVAQAS  310 (403)
T ss_pred             HHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence            77664 68999999999998887754

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.22  E-value=1.6e-11  Score=100.41  Aligned_cols=105  Identities=25%  Similarity=0.403  Sum_probs=66.4

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHhc-CCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV  113 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~  113 (354)
                      .+++|.||+|+|||.+++++|+.+. +.....+.++...+.                ..+       +.  .  ..+...
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~----------------~~~-------~~--~--~~~~~l   56 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS----------------EGD-------DV--E--SSVSKL   56 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC----------------SHH-------HC--S--CHCHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc----------------ccc-------hH--H--hhhhhh
Confidence            3599999999999999999999887 555555555554443                000       00  0  001111


Q ss_pred             HHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHhhc-----------cCceeEEEEecCCC
Q 018543          114 IKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------EAQHSLRRTMEKY-----------SASCRLILCCNSSS  171 (354)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------~~~~~Ll~~le~~-----------~~~~~~Il~~~~~~  171 (354)
                      +.    ..+.. ....+..||++||+|..++           ..|+.|+++||+.           ..++.||+++|-..
T Consensus        57 ~~----~~~~~-v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~  131 (171)
T PF07724_consen   57 LG----SPPGY-VGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA  131 (171)
T ss_dssp             HH----HTTCH-HHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred             hh----cccce-eeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence            11    01000 0011224999999999999           9999999999863           14577888777654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.21  E-value=3.2e-10  Score=103.29  Aligned_cols=152  Identities=24%  Similarity=0.347  Sum_probs=90.5

Q ss_pred             cccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCce
Q 018543           15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH   94 (354)
Q Consensus        15 ~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (354)
                      ++|+++++..+..++..|.  |++|.||||+|||++++.+|+.+..+   ...+.+.                       
T Consensus        26 ~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~~~---~~~i~~t-----------------------   77 (329)
T COG0714          26 VVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALGLP---FVRIQCT-----------------------   77 (329)
T ss_pred             eeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhCCC---eEEEecC-----------------------
Confidence            6788888877776776664  49999999999999999999976311   1111111                       


Q ss_pred             eeeCCCCCCCcchhHHHHHHHHHH----hcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc------C-----
Q 018543           95 VELSPSDAGFQDRYVVQEVIKEMA----KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------A-----  159 (354)
Q Consensus        95 i~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~------~-----  159 (354)
                      -.+.+++.-+..  .+........    ...++  ..... .++++||+++.++..+++|+..|++..      .     
T Consensus        78 ~~l~p~d~~G~~--~~~~~~~~~~~~~~~~gpl--~~~~~-~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~  152 (329)
T COG0714          78 PDLLPSDLLGTY--AYAALLLEPGEFRFVPGPL--FAAVR-VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLP  152 (329)
T ss_pred             CCCCHHHhcCch--hHhhhhccCCeEEEecCCc--ccccc-eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCC
Confidence            011122211110  1111100000    00111  00111 599999999999999999999998721      1     


Q ss_pred             ceeEEEEe-c-----CCCcccHHHhhhc-ceeeecCCCHHHHHHHHH
Q 018543          160 SCRLILCC-N-----SSSKVTEAIRSRC-LNIRINSPTEEQIVKVLE  199 (354)
Q Consensus       160 ~~~~Il~~-~-----~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~  199 (354)
                      ...+++.| |     ....+++++.+|| ..+.++.|..++...++.
T Consensus       153 ~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~  199 (329)
T COG0714         153 PPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIIL  199 (329)
T ss_pred             CCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHH
Confidence            12234444 5     2346899999999 778888885554444443

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.21  E-value=6.1e-11  Score=96.00  Aligned_cols=152  Identities=16%  Similarity=0.219  Sum_probs=111.1

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (354)
                      +++.+.-.++.|+.  .-+.||+|+||||+.|.+|. ++-|+.+.+.+++.+.. ..|.          .-..++.+...
T Consensus        17 AvrdVSF~ae~Gei--~GlLG~NGAGKTT~LRmiat-lL~P~~G~v~idg~d~~-~~p~----------~vrr~IGVl~~   82 (245)
T COG4555          17 AVRDVSFEAEEGEI--TGLLGENGAGKTTLLRMIAT-LLIPDSGKVTIDGVDTV-RDPS----------FVRRKIGVLFG   82 (245)
T ss_pred             hhhheeEEeccceE--EEEEcCCCCCchhHHHHHHH-hccCCCceEEEeecccc-cChH----------HHhhhcceecC
Confidence            34445555566765  78999999999999999998 77888888888875433 0110          11234666667


Q ss_pred             CCCCcchhHHHHHHHHHHhcCCCC---------------------------CC------------CCCCceEEEEeCC-C
Q 018543          101 DAGFQDRYVVQEVIKEMAKNRPID---------------------------TK------------GKRGFKVLVLNEV-D  140 (354)
Q Consensus       101 ~~~~~~~~~i~~~~~~~~~~~~~~---------------------------~~------------~~~~~~viiiDE~-d  140 (354)
                      +.+.+.+.+.++.++.++......                           ++            ...+++++++||+ .
T Consensus        83 e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~s  162 (245)
T COG4555          83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTS  162 (245)
T ss_pred             CcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCC
Confidence            778888888999998887665541                           01            0157899999997 8


Q ss_pred             cCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcceeee
Q 018543          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRI  186 (354)
Q Consensus       141 ~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~  186 (354)
                      .++-.....+.+.+.......+.|+.++|.-.-.+++++|+.+++=
T Consensus       163 GLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~  208 (245)
T COG4555         163 GLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHK  208 (245)
T ss_pred             CccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEec
Confidence            8988888889998877766567777777777777889999876553

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=99.19  E-value=1.1e-09  Score=109.32  Aligned_cols=202  Identities=20%  Similarity=0.223  Sum_probs=122.2

Q ss_pred             CCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
                      .+|++++|+....+.+...++.  ....+++|+|++|||||++|+++...-...+...+.++|....             
T Consensus       373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~-------------  439 (686)
T PRK15429        373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP-------------  439 (686)
T ss_pred             ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCC-------------
Confidence            4688999987777666554442  2223499999999999999999977432223233333332111             


Q ss_pred             ccccCceee--eCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-------
Q 018543           88 TLSSANHVE--LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------  158 (354)
Q Consensus        88 ~~~~~~~i~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-------  158 (354)
                         . ..++  +.....+..... .......+.         .....+++|||++.|+.+.|..|++.+++..       
T Consensus       440 ---~-~~~~~~lfg~~~~~~~g~-~~~~~g~le---------~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~  505 (686)
T PRK15429        440 ---A-GLLESDLFGHERGAFTGA-SAQRIGRFE---------LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN  505 (686)
T ss_pred             ---h-hHhhhhhcCccccccccc-ccchhhHHH---------hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCC
Confidence               0 0000  000000000000 000011111         1223689999999999999999999997632       


Q ss_pred             ----CceeEEEEecCCC-------cccHHHhhhc--ceeeecCCCH--HHHHHHHHH----HHHHcCC---CCCHHHHHH
Q 018543          159 ----ASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSPTE--EQIVKVLEF----IAKKEGL---QLPSGFATR  216 (354)
Q Consensus       159 ----~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~~~--~~~~~~L~~----~~~~~~~---~i~~~~l~~  216 (354)
                          .++++|++++..-       .+.+.+..|.  ..|.+||+..  +++...+..    .+.+.|.   .+++++++.
T Consensus       506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~  585 (686)
T PRK15429        506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRT  585 (686)
T ss_pred             CcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence                3467888877643       3444566664  3577888753  455444443    3333343   478999999


Q ss_pred             HHHH-cCCCHHHHHHHHHHHHhc
Q 018543          217 LAEK-SNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       217 i~~~-s~gd~R~ai~~L~~~~~~  238 (354)
                      +..+ ..||+|+..+.++.++..
T Consensus       586 L~~y~WPGNvrEL~~~i~~a~~~  608 (686)
T PRK15429        586 LSNMEWPGNVRELENVIERAVLL  608 (686)
T ss_pred             HHhCCCCCcHHHHHHHHHHHHHh
Confidence            9885 589999999999988764

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.1e-09  Score=103.20  Aligned_cols=177  Identities=19%  Similarity=0.253  Sum_probs=119.3

Q ss_pred             CCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543           13 DQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
                      +++.|.......++..+..           | +.|. +|+|||||+|||.+++++|++..+   ..+.+++         
T Consensus       184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a---~~~~i~~---------  251 (693)
T KOG0730|consen  184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA---FLFLING---------  251 (693)
T ss_pred             cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc---eeEeccc---------
Confidence            4556665555556655531           2 2233 999999999999999999997521   0111111         


Q ss_pred             ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH----------HHHHH
Q 018543           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------EAQHS  149 (354)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----------~~~~~  149 (354)
                                  +..+.-.    .......+|..+.......        .+.+++|||+|.+.+          .....
T Consensus       252 ------------peli~k~----~gEte~~LR~~f~~a~k~~--------~psii~IdEld~l~p~r~~~~~~e~Rv~sq  307 (693)
T KOG0730|consen  252 ------------PELISKF----PGETESNLRKAFAEALKFQ--------VPSIIFIDELDALCPKREGADDVESRVVSQ  307 (693)
T ss_pred             ------------HHHHHhc----ccchHHHHHHHHHHHhccC--------CCeeEeHHhHhhhCCcccccchHHHHHHHH
Confidence                        1011111    1111234566665544332        158999999998864          34557


Q ss_pred             HHHHHhhcc--CceeEEEEecCCCcccHHHhh-hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q 018543          150 LRRTMEKYS--ASCRLILCCNSSSKVTEAIRS-RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSL  225 (354)
Q Consensus       150 Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s-R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~  225 (354)
                      |+.+|+...  .+..++.++|.+..+.+++++ |+. .+.+.-|+..+..++|+...++.+.. ++..+..++..+.|-.
T Consensus       308 lltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyv  386 (693)
T KOG0730|consen  308 LLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYV  386 (693)
T ss_pred             HHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchh
Confidence            888887654  567777788999999999997 764 58899999999999999998887776 6778888888877755


Q ss_pred             H
Q 018543          226 R  226 (354)
Q Consensus       226 R  226 (354)
                      .
T Consensus       387 G  387 (693)
T KOG0730|consen  387 G  387 (693)
T ss_pred             H
Confidence            3

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=99.18  E-value=1.5e-09  Score=100.63  Aligned_cols=195  Identities=16%  Similarity=0.199  Sum_probs=126.0

Q ss_pred             CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      ...+++|+....+.+.+.+.+  ....+++|+|++||||..+|+++-+.--..+...+.++|..+.              
T Consensus       139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip--------------  204 (464)
T COG2204         139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP--------------  204 (464)
T ss_pred             ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC--------------
Confidence            577899998888888877764  3333499999999999999999976322222222333322111              


Q ss_pred             cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCC-C--------CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-
Q 018543           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP-I--------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-  158 (354)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~-~--------~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-  158 (354)
                                       ....=.++   |..... +        ..-...+...+|+||+..|+.+.|..|++.+++.. 
T Consensus       205 -----------------~~l~ESEL---FGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~  264 (464)
T COG2204         205 -----------------ENLLESEL---FGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREF  264 (464)
T ss_pred             -----------------HHHHHHHh---hcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCee
Confidence                             00000011   111110 0        00012345789999999999999999999997632 


Q ss_pred             ----------CceeEEEEecCCC-------cccHHHhhhcce--eeecCCC--HHHHH----HHHHHHHHHcCC---CCC
Q 018543          159 ----------ASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSPT--EEQIV----KVLEFIAKKEGL---QLP  210 (354)
Q Consensus       159 ----------~~~~~Il~~~~~~-------~l~~~l~sR~~~--i~~~~~~--~~~~~----~~L~~~~~~~~~---~i~  210 (354)
                                -++++|.+||..-       ++-+.|--|..+  +++||+.  .+++-    .+|++.+.+.|.   .++
T Consensus       265 ~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s  344 (464)
T COG2204         265 ERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFS  344 (464)
T ss_pred             EecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCC
Confidence                      2466888777653       577788888765  5556653  23433    344445555544   688


Q ss_pred             HHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Q 018543          211 SGFATRLAEK-SNRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       211 ~~~l~~i~~~-s~gd~R~ai~~L~~~~~~~  239 (354)
                      ++++..+..+ ..||+|+..|.++.++...
T Consensus       345 ~~a~~~L~~y~WPGNVREL~N~ver~~il~  374 (464)
T COG2204         345 PEALAALLAYDWPGNVRELENVVERAVILS  374 (464)
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence            9999998885 5899999999999887654

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.17  E-value=3.1e-11  Score=95.85  Aligned_cols=52  Identities=25%  Similarity=0.350  Sum_probs=41.0

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhcc-------------C------ceeEEEEecCCC----cccHHHhhhc
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------A------SCRLILCCNSSS----KVTEAIRSRC  181 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-------------~------~~~~Il~~~~~~----~l~~~l~sR~  181 (354)
                      +..+++|||++..+++.++.|+.++++..             .      +..+|+++|...    .+.++++|||
T Consensus        65 ~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf  139 (139)
T PF07728_consen   65 KGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF  139 (139)
T ss_dssp             EEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred             ceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence            56899999999999999999999996521             1      278888999887    8999999997

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.17  E-value=2.4e-11  Score=108.28  Aligned_cols=150  Identities=17%  Similarity=0.247  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeC
Q 018543           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (354)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (354)
                      ..+++.+.-.++.|.+  +.|.||+|+||||+.+++++ +..+..+.+.+++....-+           .......+.+.
T Consensus        18 ~~~l~~vs~~i~~Gei--~gllG~NGAGKTTllk~l~g-l~~p~~G~i~i~G~~~~~~-----------~~~~~~~igy~   83 (293)
T COG1131          18 KTALDGVSFEVEPGEI--FGLLGPNGAGKTTLLKILAG-LLKPTSGEILVLGYDVVKE-----------PAKVRRRIGYV   83 (293)
T ss_pred             CEEEeceeEEEcCCeE--EEEECCCCCCHHHHHHHHhC-CcCCCceEEEEcCEeCccC-----------HHHHHhheEEE
Confidence            4445555555666665  89999999999999999998 6678888888887654310           00112235566


Q ss_pred             CCCCCCcchhHHHHHHHHHHhcCCC---------------------------CCCC------------CCCceEEEEeCC
Q 018543           99 PSDAGFQDRYVVQEVIKEMAKNRPI---------------------------DTKG------------KRGFKVLVLNEV  139 (354)
Q Consensus        99 ~~~~~~~~~~~i~~~~~~~~~~~~~---------------------------~~~~------------~~~~~viiiDE~  139 (354)
                      +++...++..++++.++.++.....                           .+|.            .++++++|+||+
T Consensus        84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP  163 (293)
T COG1131          84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP  163 (293)
T ss_pred             ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            6665555555566666555443321                           0110            157899999998


Q ss_pred             -CcCCHHHHHHHHHHHhhccCce-eEEEEecCCCcccHHHhhhcc
Q 018543          140 -DKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       140 -d~l~~~~~~~Ll~~le~~~~~~-~~Il~~~~~~~l~~~l~sR~~  182 (354)
                       ..|++.....+++.+.+..... ..|++++|...-...+.+|..
T Consensus       164 t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~  208 (293)
T COG1131         164 TSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI  208 (293)
T ss_pred             CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE
Confidence             8899999999999998776544 567777776666666677754

>TIGR00368 Mg chelatase-related protein

Probab=99.16  E-value=2.9e-10  Score=107.86  Aligned_cols=170  Identities=18%  Similarity=0.251  Sum_probs=98.5

Q ss_pred             CCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccc
Q 018543           11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (354)
                      .|+|+.||..+++.+...+..+  .|++|.||||+|||++++.++. ++.+..+...+++....  .-.... ..-....
T Consensus       190 d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~-llp~~~~~~~le~~~i~--s~~g~~-~~~~~~~  263 (499)
T TIGR00368       190 DLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQG-ILPPLTNEEAIETARIW--SLVGKL-IDRKQIK  263 (499)
T ss_pred             CHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhc-ccCCCCCcEEEeccccc--cchhhh-ccccccc
Confidence            6889999999998888777655  3599999999999999999987 44444333333322111  000000 0000000


Q ss_pred             cCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc-------------
Q 018543           91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-------------  157 (354)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~-------------  157 (354)
                      ...+.....  ...     ...++.--....+-.+ ......+++|||++.+++..++.|+..||+.             
T Consensus       264 ~~Pf~~p~~--s~s-----~~~~~ggg~~~~pG~i-~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~  335 (499)
T TIGR00368       264 QRPFRSPHH--SAS-----KPALVGGGPIPLPGEI-SLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFY  335 (499)
T ss_pred             cCCcccccc--ccc-----hhhhhCCccccchhhh-hccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceec
Confidence            000000000  000     0000000000000000 1234479999999999999999999999764             


Q ss_pred             cCceeEEEEecCCC-----------------------cccHHHhhhcc-eeeecCCCHHHH
Q 018543          158 SASCRLILCCNSSS-----------------------KVTEAIRSRCL-NIRINSPTEEQI  194 (354)
Q Consensus       158 ~~~~~~Il~~~~~~-----------------------~l~~~l~sR~~-~i~~~~~~~~~~  194 (354)
                      +.++.+|.++|...                       ++..++.+|+. .+.+++++.+++
T Consensus       336 pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l  396 (499)
T TIGR00368       336 PARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL  396 (499)
T ss_pred             cCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence            24577888777421                       58889999996 578888887654

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.15  E-value=2.3e-11  Score=101.26  Aligned_cols=152  Identities=16%  Similarity=0.251  Sum_probs=113.9

Q ss_pred             ccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (354)
Q Consensus        16 ~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   95 (354)
                      .|...++..+.-.+..|++  +-|.||+|.||||+.|.+.+ +..++.+.+.+++.....+              ..+-+
T Consensus        12 Fg~k~av~~isf~v~~G~i--~GllG~NGAGKTTtfRmILg-lle~~~G~I~~~g~~~~~~--------------~~~rI   74 (300)
T COG4152          12 FGDKKAVDNISFEVPPGEI--FGLLGPNGAGKTTTFRMILG-LLEPTEGEITWNGGPLSQE--------------IKNRI   74 (300)
T ss_pred             cCceeeecceeeeecCCeE--EEeecCCCCCccchHHHHhc-cCCccCceEEEcCcchhhh--------------hhhhc
Confidence            3445566666666677776  88999999999999999998 7788888888888765411              12347


Q ss_pred             eeCCCCCCCcchhHHHHHHHHHHhcCCCC---------------------------CC------------CCCCceEEEE
Q 018543           96 ELSPSDAGFQDRYVVQEVIKEMAKNRPID---------------------------TK------------GKRGFKVLVL  136 (354)
Q Consensus        96 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------------------------~~------------~~~~~~viii  136 (354)
                      .|.|++.|.+.+..+.+.+..++......                           ++            .-+++.++|+
T Consensus        75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL  154 (300)
T COG4152          75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL  154 (300)
T ss_pred             ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence            89999999999889999999988877651                           01            0157899999


Q ss_pred             eCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       137 DE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ||+ ..|++-....|.+.+-+....+..|+.++|.-.-.+.+++|...+
T Consensus       155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL  203 (300)
T COG4152         155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLML  203 (300)
T ss_pred             cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhee
Confidence            996 899998888898888666665666666666655556777765433

>PRK12377 putative replication protein; Provisional

Probab=99.14  E-value=9e-10  Score=95.17  Aligned_cols=152  Identities=17%  Similarity=0.257  Sum_probs=84.5

Q ss_pred             cccCCCCCCCccc----CHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543            5 DKYRPKTLDQVIV----HQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (354)
Q Consensus         5 ekyrP~~~~~~~g----~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~   78 (354)
                      ..++..+|+.+..    +..+.......++.  ....+++|+||||+|||+++.++++.+...+...+.+....+     
T Consensus        66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l-----  140 (248)
T PRK12377         66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV-----  140 (248)
T ss_pred             cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHH-----
Confidence            4566678888863    33344444444432  223459999999999999999999988543221111100000     


Q ss_pred             CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC--CcCCHHHHHHHHHHHhh
Q 018543           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--DKLSREAQHSLRRTMEK  156 (354)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~--d~l~~~~~~~Ll~~le~  156 (354)
                                      +........  ......+.++.           -.+..+|||||+  ...++..+..|..+++.
T Consensus       141 ----------------~~~l~~~~~--~~~~~~~~l~~-----------l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~  191 (248)
T PRK12377        141 ----------------MSRLHESYD--NGQSGEKFLQE-----------LCKVDLLVLDEIGIQRETKNEQVVLNQIIDR  191 (248)
T ss_pred             ----------------HHHHHHHHh--ccchHHHHHHH-----------hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence                            000000000  00001111111           134589999998  56678888899999976


Q ss_pred             cc-CceeEEEEecCCC-----cccHHHhhhc-----ceeeecCCC
Q 018543          157 YS-ASCRLILCCNSSS-----KVTEAIRSRC-----LNIRINSPT  190 (354)
Q Consensus       157 ~~-~~~~~Il~~~~~~-----~l~~~l~sR~-----~~i~~~~~~  190 (354)
                      .- ...++|++||-..     .+.+.+.||.     ..|.|.-.+
T Consensus       192 R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s  236 (248)
T PRK12377        192 RTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES  236 (248)
T ss_pred             HHhcCCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence            43 3577888888654     2344455553     236665443

>smart00763 AAA_PrkA PrkA AAA domain

Probab=99.14  E-value=3.1e-09  Score=95.49  Aligned_cols=92  Identities=15%  Similarity=0.131  Sum_probs=63.9

Q ss_pred             CCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhcceeeecCC
Q 018543          128 KRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCLNIRINSP  189 (354)
Q Consensus       128 ~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~~i~~~~~  189 (354)
                      .++..++-++|+...+.+.++.|+..+++..           -...+|.++|..+       +..+++++||..+.++.+
T Consensus       234 ~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~  313 (361)
T smart00763      234 RANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYC  313 (361)
T ss_pred             cccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCc
Confidence            4567899999999999999999999997631           1133455555542       678999999999998766


Q ss_pred             C-HHHHHHHHHHHHHHc---CCCCCHHHHHHHHH
Q 018543          190 T-EEQIVKVLEFIAKKE---GLQLPSGFATRLAE  219 (354)
Q Consensus       190 ~-~~~~~~~L~~~~~~~---~~~i~~~~l~~i~~  219 (354)
                      . .++-.++.++.+...   +..+.+.+++.++.
T Consensus       314 l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~  347 (361)
T smart00763      314 LRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAAL  347 (361)
T ss_pred             CCHHHHHHHHHHHhccCcCcccccCchHHHHHHH
Confidence            4 455555666555433   44566666655554

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []

Probab=99.13  E-value=9.7e-10  Score=79.93  Aligned_cols=84  Identities=31%  Similarity=0.407  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhHhhCCCChhH
Q 018543          254 EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAAYYEHKMRRGNKAIF  332 (354)
Q Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  332 (354)
                      .+.+.++++.+.+    +++.+++..+++++..|+++.+|+..++..+.+ .+++..+.+++..++++++||..|+++.+
T Consensus         5 ~~~i~~i~~~~~~----~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~~~~~~~~k~~i~~~la~~e~rl~~G~~e~l   80 (89)
T PF08542_consen    5 PEVIEEILESCLN----GDFKEARKKLYELLVEGYSASDILKQLHEVLVESDIPDSQKAEILKILAEIEYRLSDGASEIL   80 (89)
T ss_dssp             HHHHHHHHHHHHH----TCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTSTSSHHHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred             HHHHHHHHHHHHh----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhHHHHCCCCHHH
Confidence            4566777777776    689999999999999999999999999999988 66788999999999999999999999999


Q ss_pred             hHHHHHHHH
Q 018543          333 HLEAFVAKF  341 (354)
Q Consensus       333 ~l~~~i~~~  341 (354)
                      ||++|++++
T Consensus        81 Ql~alva~~   89 (89)
T PF08542_consen   81 QLEALVAAF   89 (89)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhC
Confidence            999999985

PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=5.3e-09  Score=99.23  Aligned_cols=167  Identities=19%  Similarity=0.205  Sum_probs=104.1

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee-eCCCCCCCcchhHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE-LSPSDAGFQDRYVVQEV  113 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~i~~~  113 (354)
                      ++++|+||+|+|||.+++++++++..+..-                             |++ ..++......-..++..
T Consensus       432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~-----------------------------hv~~v~Cs~l~~~~~e~iQk~  482 (952)
T KOG0735|consen  432 GNILLNGPKGSGKTNLVKALFDYYSKDLIA-----------------------------HVEIVSCSTLDGSSLEKIQKF  482 (952)
T ss_pred             ccEEEeCCCCCCHhHHHHHHHHHhccccce-----------------------------EEEEEechhccchhHHHHHHH
Confidence            459999999999999999999987422211                             111 12222222221233333


Q ss_pred             HHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----H-----H----HHHHHHHHhhc---cCceeEEEEecCCCcccHH
Q 018543          114 IKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----E-----A----QHSLRRTMEKY---SASCRLILCCNSSSKVTEA  176 (354)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----~-----~----~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~  176 (354)
                      +...-...-     ...+.||++|++|.+-.     +     .    ...|.+.+..+   .....+|.+.+....+.+.
T Consensus       483 l~~vfse~~-----~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~  557 (952)
T KOG0735|consen  483 LNNVFSEAL-----WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL  557 (952)
T ss_pred             HHHHHHHHH-----hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence            333221110     23458999999988732     1     1    11222333333   2334566666666788888


Q ss_pred             Hhhh--cc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Q 018543          177 IRSR--CL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS-LRRAILSFETC  235 (354)
Q Consensus       177 l~sR--~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd-~R~ai~~L~~~  235 (354)
                      +.|-  ++ ++++++|...+..++|..++.+.......+.++.++..++|- ++...-..+.+
T Consensus       558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRa  620 (952)
T KOG0735|consen  558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERA  620 (952)
T ss_pred             hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHH
Confidence            8774  33 689999999999999999998877666778888899999884 44444444433

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=99.11  E-value=2.7e-09  Score=103.73  Aligned_cols=53  Identities=26%  Similarity=0.447  Sum_probs=47.1

Q ss_pred             cCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543            7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus         7 yrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      -+|..+++++||++++..|..++..++  +++|+||||+||||++++++..+.+.
T Consensus        25 ~~~~~~~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l~~~   77 (637)
T PRK13765         25 VPERLIDQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELLPKE   77 (637)
T ss_pred             cCcccHHHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHcChH
Confidence            468899999999999999999998774  69999999999999999999876543

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.11  E-value=3.3e-10  Score=91.01  Aligned_cols=160  Identities=19%  Similarity=0.272  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCC
Q 018543           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (354)
Q Consensus        20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (354)
                      .+.+.+.-.+..|.+  .+++||+|+||||+.+.+..+ ..+..+.+.+++.+..  .-..   .++..+  ...+.+..
T Consensus        16 ~aL~~vs~~i~~Gef--~fl~GpSGAGKSTllkLi~~~-e~pt~G~i~~~~~dl~--~l~~---~~iP~L--RR~IGvVF   85 (223)
T COG2884          16 EALRDVSFHIPKGEF--VFLTGPSGAGKSTLLKLIYGE-ERPTRGKILVNGHDLS--RLKG---REIPFL--RRQIGVVF   85 (223)
T ss_pred             hhhhCceEeecCceE--EEEECCCCCCHHHHHHHHHhh-hcCCCceEEECCeecc--cccc---cccchh--hheeeeEe
Confidence            344555555566666  899999999999999999884 4777788877776543  1000   011110  11222222


Q ss_pred             CCCCCc-------------------c---hhHHHHHHHHH-----HhcCCCCCCCC------------CCceEEEEeCC-
Q 018543          100 SDAGFQ-------------------D---RYVVQEVIKEM-----AKNRPIDTKGK------------RGFKVLVLNEV-  139 (354)
Q Consensus       100 ~~~~~~-------------------~---~~~i~~~~~~~-----~~~~~~~~~~~------------~~~~viiiDE~-  139 (354)
                      ++...-                   .   +..+.+.++.+     +...|..+|+.            .++.+++-||+ 
T Consensus        86 QD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPT  165 (223)
T COG2884          86 QDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPT  165 (223)
T ss_pred             eeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCC
Confidence            222211                   1   11233333332     11222233321            57899999998 


Q ss_pred             CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcceeeecCC
Q 018543          140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP  189 (354)
Q Consensus       140 d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~  189 (354)
                      ..++++....+++++++....+..|++++|...+..+.+.|+..++-..+
T Consensus       166 GNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl  215 (223)
T COG2884         166 GNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL  215 (223)
T ss_pred             CCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEE
Confidence            78999999999999999888888888899999999999999877665443

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=99.10  E-value=1.8e-09  Score=105.28  Aligned_cols=107  Identities=19%  Similarity=0.226  Sum_probs=72.5

Q ss_pred             CCceEEEEeCCCcCCHHHHHHHHHHHhhcc---------------------CceeEEEEecCC--CcccHHHhhhcc---
Q 018543          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------------------ASCRLILCCNSS--SKVTEAIRSRCL---  182 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---------------------~~~~~Il~~~~~--~~l~~~l~sR~~---  182 (354)
                      .+..+++|||++.|++..|..|++.|++..                     -++++|+++|..  ..+.+++++|+.   
T Consensus       216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~  295 (608)
T TIGR00764       216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG  295 (608)
T ss_pred             CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence            345799999999999999999999996421                     245577777654  478999999987   


Q ss_pred             e-eeec---CCCHHHH---HHHHHHHHHHcC-C-CCCHHHHHHHHHHcC----------CCHHHHHHHHHHH
Q 018543          183 N-IRIN---SPTEEQI---VKVLEFIAKKEG-L-QLPSGFATRLAEKSN----------RSLRRAILSFETC  235 (354)
Q Consensus       183 ~-i~~~---~~~~~~~---~~~L~~~~~~~~-~-~i~~~~l~~i~~~s~----------gd~R~ai~~L~~~  235 (354)
                      + +.|+   +.+.+..   ..++.+.+++.| . .+++++++.+++.+.          .+.|..-+++..+
T Consensus       296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A  367 (608)
T TIGR00764       296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA  367 (608)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence            2 4443   2344444   444444555553 2 588999999886321          3467777776654

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=7.9e-10  Score=109.25  Aligned_cols=132  Identities=21%  Similarity=0.390  Sum_probs=94.7

Q ss_pred             CcccCHHHHHHHHHHHhc-----CC--CCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccc
Q 018543           14 QVIVHQDIAQNLKKLVTE-----QD--CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~~-----~~--~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
                      .++||++++..+..++..     ++  ... ++|.||.|+|||-+|+++|..+++.....+.+|...|.          +
T Consensus       563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~----------e  632 (898)
T KOG1051|consen  563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQ----------E  632 (898)
T ss_pred             hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhh----------h
Confidence            578999999999988864     22  222 99999999999999999999999988888888877655          1


Q ss_pred             ccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-------
Q 018543           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------  158 (354)
Q Consensus        86 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-------  158 (354)
                              +.....+..++........+...+..         .++.||++||+|..++..++.|++.+++..       
T Consensus       633 --------vskligsp~gyvG~e~gg~Lteavrr---------rP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr  695 (898)
T KOG1051|consen  633 --------VSKLIGSPPGYVGKEEGGQLTEAVKR---------RPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGR  695 (898)
T ss_pred             --------hhhccCCCcccccchhHHHHHHHHhc---------CCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCc
Confidence                    11111222222222223333333322         345899999999999999999999998743       


Q ss_pred             ----CceeEEEEecCCCc
Q 018543          159 ----ASCRLILCCNSSSK  172 (354)
Q Consensus       159 ----~~~~~Il~~~~~~~  172 (354)
                          .+++||+++|....
T Consensus       696 ~Vd~kN~I~IMTsn~~~~  713 (898)
T KOG1051|consen  696 EVDFKNAIFIMTSNVGSS  713 (898)
T ss_pred             EeeccceEEEEecccchH
Confidence                56888988887543

>PRK08116 hypothetical protein; Validated

Probab=99.09  E-value=5.4e-10  Score=98.23  Aligned_cols=155  Identities=17%  Similarity=0.296  Sum_probs=87.2

Q ss_pred             cccCCCCCCCcccC---HHHHHHHHHHHhc----CCC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543            5 DKYRPKTLDQVIVH---QDIAQNLKKLVTE----QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus         5 ekyrP~~~~~~~g~---~~~~~~l~~~l~~----~~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      ++|+-.+|+.+...   ..+....+..++.    ... ..++|+||+|+|||+++.++++++...+...+.++...+.  
T Consensus        77 ~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll--  154 (268)
T PRK08116         77 EKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL--  154 (268)
T ss_pred             HHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH--
Confidence            35566678877533   2233344433331    221 2399999999999999999999885432111111100000  


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC--CcCCHHHHHHHHHHH
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--DKLSREAQHSLRRTM  154 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~--d~l~~~~~~~Ll~~l  154 (354)
                                .        .+.. ...........++++.+           .+..++||||+  +..+...+..|..++
T Consensus       155 ----------~--------~i~~-~~~~~~~~~~~~~~~~l-----------~~~dlLviDDlg~e~~t~~~~~~l~~ii  204 (268)
T PRK08116        155 ----------N--------RIKS-TYKSSGKEDENEIIRSL-----------VNADLLILDDLGAERDTEWAREKVYNII  204 (268)
T ss_pred             ----------H--------HHHH-HHhccccccHHHHHHHh-----------cCCCEEEEecccCCCCCHHHHHHHHHHH
Confidence                      0        0000 00000000111222211           23479999998  556777888899988


Q ss_pred             hh-ccCceeEEEEecCCCc-----ccHHHhhh----cceeeecCCCH
Q 018543          155 EK-YSASCRLILCCNSSSK-----VTEAIRSR----CLNIRINSPTE  191 (354)
Q Consensus       155 e~-~~~~~~~Il~~~~~~~-----l~~~l~sR----~~~i~~~~~~~  191 (354)
                      +. +....++|++||.+..     +.+.+.||    |..+.|..++.
T Consensus       205 n~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~  251 (268)
T PRK08116        205 DSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY  251 (268)
T ss_pred             HHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence            75 3445678888887642     44567788    66788877664

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=99.09  E-value=9.3e-09  Score=97.89  Aligned_cols=196  Identities=15%  Similarity=0.153  Sum_probs=119.0

Q ss_pred             CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      .+.+++|.....+.+...+..  ....+++++|++|+||+++|+.+...-.......+.++|..+.              
T Consensus       137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~--------------  202 (445)
T TIGR02915       137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP--------------  202 (445)
T ss_pred             cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC--------------
Confidence            456688876666555555542  2223489999999999999999976432122122222222110              


Q ss_pred             cccCceeeeCCCCCCCcchhHHHH-HHHHH----Hh--cCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---
Q 018543           89 LSSANHVELSPSDAGFQDRYVVQE-VIKEM----AK--NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (354)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~i~~-~~~~~----~~--~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---  158 (354)
                                       + ..+.. ++...    ..  ......-...+...++|||++.|+...|..|++++++..   
T Consensus       203 -----------------~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~  264 (445)
T TIGR02915       203 -----------------E-NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIER  264 (445)
T ss_pred             -----------------h-HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEe
Confidence                             0 00000 00000    00  000000012344689999999999999999999997532   


Q ss_pred             --------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCCCH--HHHHHHHHH----HHHHcC---CCCCHH
Q 018543          159 --------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEF----IAKKEG---LQLPSG  212 (354)
Q Consensus       159 --------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~~L~~----~~~~~~---~~i~~~  212 (354)
                              .++++|++++...       .+.+.+..|+.  .|++||+..  +++..+...    ...+.+   ..++++
T Consensus       265 ~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~  344 (445)
T TIGR02915       265 LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDD  344 (445)
T ss_pred             CCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence                    2467888877652       45566777764  577777743  344433333    333333   468999


Q ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 018543          213 FATRLAEKS-NRSLRRAILSFETCRVQ  238 (354)
Q Consensus       213 ~l~~i~~~s-~gd~R~ai~~L~~~~~~  238 (354)
                      +++.+..+. .||+|...+.++.++..
T Consensus       345 a~~~L~~~~wpgNvreL~~~i~~a~~~  371 (445)
T TIGR02915       345 ALRALEAHAWPGNVRELENKVKRAVIM  371 (445)
T ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence            999998875 89999999999988764

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=99.07  E-value=3.1e-09  Score=86.62  Aligned_cols=136  Identities=18%  Similarity=0.226  Sum_probs=73.2

Q ss_pred             cccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC
Q 018543           15 VIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA   92 (354)
Q Consensus        15 ~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (354)
                      ++|.....+.+.+.++.  ....+++|+|++||||+.+|+++-+.-.......+.++|..+.                  
T Consensus         1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~------------------   62 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALP------------------   62 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-------------------
T ss_pred             CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhh------------------
Confidence            46665555555554443  2224599999999999999999976322222223333332211                  


Q ss_pred             ceeeeCCCCCCCcchhHHHHHHHHHHhcCCC-CCC--------CCCCceEEEEeCCCcCCHHHHHHHHHHHhhc------
Q 018543           93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPI-DTK--------GKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------  157 (354)
Q Consensus        93 ~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~--------~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~------  157 (354)
                                   +...-.++   |...... ...        ...+...++|||++.|++..|..|+++|++.      
T Consensus        63 -------------~~~~e~~L---FG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g  126 (168)
T PF00158_consen   63 -------------EELLESEL---FGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLG  126 (168)
T ss_dssp             -------------HHHHHHHH---HEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCT
T ss_pred             -------------cchhhhhh---hccccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhcccc
Confidence                         00000011   1111000 000        0124478999999999999999999999853      


Q ss_pred             -----cCceeEEEEecCCC-------cccHHHhhhccee
Q 018543          158 -----SASCRLILCCNSSS-------KVTEAIRSRCLNI  184 (354)
Q Consensus       158 -----~~~~~~Il~~~~~~-------~l~~~l~sR~~~i  184 (354)
                           +.++++|++|+.+-       .+.+.+--|..++
T Consensus       127 ~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL~~~  165 (168)
T PF00158_consen  127 SDKPVPVDVRIIASTSKDLEELVEQGRFREDLYYRLNVF  165 (168)
T ss_dssp             SSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTTE
T ss_pred             ccccccccceEEeecCcCHHHHHHcCCChHHHHHHhceE
Confidence                 23678888888652       4555565555444

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>smart00350 MCM minichromosome maintenance proteins

Probab=99.05  E-value=6e-09  Score=100.11  Aligned_cols=74  Identities=19%  Similarity=0.324  Sum_probs=57.2

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhcc-------------CceeEEEEecCCC-------------cccHHHhhhcce
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLILCCNSSS-------------KVTEAIRSRCLN  183 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~~-------------~l~~~l~sR~~~  183 (354)
                      +..+++|||++.+++..|.+|+..||+..             ..+.+|.++|...             .+.+++.||+..
T Consensus       300 ~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdL  379 (509)
T smart00350      300 DNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDL  379 (509)
T ss_pred             CCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceee
Confidence            45799999999999999999999997632             3466777777432             589999999943


Q ss_pred             --eeecCCCHHHHHHHHHHHHH
Q 018543          184 --IRINSPTEEQIVKVLEFIAK  203 (354)
Q Consensus       184 --i~~~~~~~~~~~~~L~~~~~  203 (354)
                        +-..+++.+.-..+++++..
T Consensus       380 i~~~~d~~~~~~d~~i~~~i~~  401 (509)
T smart00350      380 LFVVLDEVDEERDRELAKHVVD  401 (509)
T ss_pred             EEEecCCCChHHHHHHHHHHHH
Confidence              44577888877788877654

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=99.05  E-value=4.6e-10  Score=85.19  Aligned_cols=51  Identities=18%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             eEEEEeCCCcCCHHHHHHHHHHHhhcc----------CceeEEEEecCC-C-----cccHHHhhhcc
Q 018543          132 KVLVLNEVDKLSREAQHSLRRTMEKYS----------ASCRLILCCNSS-S-----KVTEAIRSRCL  182 (354)
Q Consensus       132 ~viiiDE~d~l~~~~~~~Ll~~le~~~----------~~~~~Il~~~~~-~-----~l~~~l~sR~~  182 (354)
                      .|+++||+.+.++..|.+|++.|++..          +...+|+.|.++ +     .++++..+|+.
T Consensus        64 ~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~  130 (131)
T PF07726_consen   64 NILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM  130 (131)
T ss_dssp             SEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred             ceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence            599999999999999999999998742          122344544444 3     68889999874

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK07952 DNA replication protein DnaC; Validated

Probab=99.04  E-value=1.2e-09  Score=94.23  Aligned_cols=154  Identities=16%  Similarity=0.233  Sum_probs=85.5

Q ss_pred             ccccCCCCCCCccc----CHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543            4 VDKYRPKTLDQVIV----HQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (354)
Q Consensus         4 ~ekyrP~~~~~~~g----~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~   77 (354)
                      .+.|++.+|+++..    +..++..+..+++.  +...+++|+||||+|||+++.++++++...+.....+...++.   
T Consensus        63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~---  139 (244)
T PRK07952         63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM---  139 (244)
T ss_pred             CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH---
Confidence            35678889999863    33456666666653  2223599999999999999999999875432211111100000   


Q ss_pred             CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC--CHHHHHHHHHHHh
Q 018543           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--SREAQHSLRRTME  155 (354)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l--~~~~~~~Ll~~le  155 (354)
                                        ........ .......++++.+           .+..++||||++..  +......|..+++
T Consensus       140 ------------------~~l~~~~~-~~~~~~~~~l~~l-----------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~  189 (244)
T PRK07952        140 ------------------SAMKDTFS-NSETSEEQLLNDL-----------SNVDLLVIDEIGVQTESRYEKVIINQIVD  189 (244)
T ss_pred             ------------------HHHHHHHh-hccccHHHHHHHh-----------ccCCEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence                              00000000 0000111222221           24579999998665  3334556777776


Q ss_pred             h-ccCceeEEEEecCCC-----cccHHHhhhc-----ceeeecCCC
Q 018543          156 K-YSASCRLILCCNSSS-----KVTEAIRSRC-----LNIRINSPT  190 (354)
Q Consensus       156 ~-~~~~~~~Il~~~~~~-----~l~~~l~sR~-----~~i~~~~~~  190 (354)
                      . +.....+|++||-..     .+.+.+.||+     ..+.|.-.+
T Consensus       190 ~Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~~s  235 (244)
T PRK07952        190 RRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDS  235 (244)
T ss_pred             HHHhCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeCCc
Confidence            5 344677888888764     2344555654     256665433

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.04  E-value=7.3e-10  Score=91.33  Aligned_cols=131  Identities=21%  Similarity=0.328  Sum_probs=76.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH-
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK-  115 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~-  115 (354)
                      +.+.||+|+||||+++.+++ +..+..+.+.+++....  ...         ......+.+.+++........+.+.+. 
T Consensus        29 ~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~--~~~---------~~~~~~i~~~~q~~~~~~~~tv~~~~~L   96 (173)
T cd03230          29 YGLLGPNGAGKTTLIKIILG-LLKPDSGEIKVLGKDIK--KEP---------EEVKRRIGYLPEEPSLYENLTVRENLKL   96 (173)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcc--cch---------HhhhccEEEEecCCccccCCcHHHHhhc
Confidence            99999999999999999998 55667777777765432  000         000112334443333222222322221 


Q ss_pred             ------HHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCc-eeEEEEecCCCcccHHHhhhccee
Q 018543          116 ------EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       116 ------~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                            .++-...    ...+++++++||+ ..|+......+.+.+++.... ..+|+++++. .....+.+|+.++
T Consensus        97 S~G~~qrv~lara----l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l  168 (173)
T cd03230          97 SGGMKQRLALAQA----LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAIL  168 (173)
T ss_pred             CHHHHHHHHHHHH----HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEE
Confidence                  0000000    1246799999998 789999999999999876433 4555555554 3444555555443

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2

Probab=99.03  E-value=1.8e-09  Score=88.87  Aligned_cols=110  Identities=21%  Similarity=0.334  Sum_probs=85.6

Q ss_pred             CCCceEEEEeCC----CcCCHHHHHHHHHHHhhccCceeEEEEec-CCC---cccHHHhhhcceeeecCCCHHHHHHHHH
Q 018543          128 KRGFKVLVLNEV----DKLSREAQHSLRRTMEKYSASCRLILCCN-SSS---KVTEAIRSRCLNIRINSPTEEQIVKVLE  199 (354)
Q Consensus       128 ~~~~~viiiDE~----d~l~~~~~~~Ll~~le~~~~~~~~Il~~~-~~~---~l~~~l~sR~~~i~~~~~~~~~~~~~L~  199 (354)
                      .++.++|++.++    +.......+.|..+++.+++++.+|+.++ ..+   ++...+.+.+.++.+.+|+..++..|++
T Consensus        55 F~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~  134 (172)
T PF06144_consen   55 FGDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIK  134 (172)
T ss_dssp             SSSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHH
T ss_pred             cCCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHH
Confidence            467899999998    55667788899999999999999998888 443   4677888889999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 018543          200 FIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (354)
Q Consensus       200 ~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~  237 (354)
                      ..+.+.|+.+++++++.+++..++|++.+.+.++.+++
T Consensus       135 ~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~L  172 (172)
T PF06144_consen  135 ERAKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLSL  172 (172)
T ss_dssp             HHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999998763

7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=99.02  E-value=3.8e-09  Score=83.61  Aligned_cols=58  Identities=26%  Similarity=0.380  Sum_probs=41.8

Q ss_pred             eEEEEeCCCcCCHHHHHHHHHHHhhc-cCceeEEEEecCCC-------cccHHHhhhc--ceeeecCC
Q 018543          132 KVLVLNEVDKLSREAQHSLRRTMEKY-SASCRLILCCNSSS-------KVTEAIRSRC--LNIRINSP  189 (354)
Q Consensus       132 ~viiiDE~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~-------~l~~~l~sR~--~~i~~~~~  189 (354)
                      ..++|+|+|.|+++.|..|...++.. ..++++|++++.+-       .+.+.+..|.  ..|.+||+
T Consensus        71 gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPpL  138 (138)
T PF14532_consen   71 GTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPPL  138 (138)
T ss_dssp             SEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE---
T ss_pred             CEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCCC
Confidence            67999999999999999999999764 56789999887654       3556666665  35666653

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=5.9e-10  Score=102.27  Aligned_cols=156  Identities=17%  Similarity=0.278  Sum_probs=100.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~  116 (354)
                      +|||||||||||.+||.+.+.|.+.++.-+  +|                     ++.+.    .+-......+|.++.+
T Consensus       259 iLLyGPPGTGKTLiARqIGkMLNArePKIV--NG---------------------PeIL~----KYVGeSE~NvR~LFaD  311 (744)
T KOG0741|consen  259 ILLYGPPGTGKTLIARQIGKMLNAREPKIV--NG---------------------PEILN----KYVGESEENVRKLFAD  311 (744)
T ss_pred             EEEECCCCCChhHHHHHHHHHhcCCCCccc--Cc---------------------HHHHH----HhhcccHHHHHHHHHh
Confidence            999999999999999999998866543311  11                     11111    0111122357777766


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCCCcCC-------------HHHHHHHHHHHhh--ccCceeEEEEecCCCcccHHHhhhc
Q 018543          117 MAKNRPIDTKGKRGFKVLVLNEVDKLS-------------REAQHSLRRTMEK--YSASCRLILCCNSSSKVTEAIRSRC  181 (354)
Q Consensus       117 ~~~~~~~~~~~~~~~~viiiDE~d~l~-------------~~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~sR~  181 (354)
                      ..+.... ....++-.|||+||+|.+.             ....|.|+.-|+.  .-.+..+|..||..+-+.+++.+-.
T Consensus       312 AEeE~r~-~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPG  390 (744)
T KOG0741|consen  312 AEEEQRR-LGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPG  390 (744)
T ss_pred             HHHHHHh-hCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCC
Confidence            5443211 1134566899999999873             3467888888742  3457889999999999999998854


Q ss_pred             --c-eeeecCCCHHHHHHHHHHH---HHHcCCCCCH-HHHHHHHHHc
Q 018543          182 --L-NIRINSPTEEQIVKVLEFI---AKKEGLQLPS-GFATRLAEKS  221 (354)
Q Consensus       182 --~-~i~~~~~~~~~~~~~L~~~---~~~~~~~i~~-~~l~~i~~~s  221 (354)
                        . .+++.-|++.....+++-+   .++.+. +++ -.++.|+.++
T Consensus       391 RlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~-l~~dVdl~elA~lT  436 (744)
T KOG0741|consen  391 RLEVQMEISLPDEKGRLQILKIHTKRMRENNK-LSADVDLKELAALT  436 (744)
T ss_pred             ceEEEEEEeCCCccCceEEEEhhhhhhhhcCC-CCCCcCHHHHHHHh
Confidence              2 4778888888777776533   333232 332 2366676654

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.02  E-value=2.8e-10  Score=97.62  Aligned_cols=147  Identities=20%  Similarity=0.288  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccC-----
Q 018543           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSA-----   92 (354)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----   92 (354)
                      ..+.+.+.-.+.+|.+  ..+.||+||||||+.+++++ ++.+..+.+.++++...  .-+.+. -..+..+.+.     
T Consensus        15 ~~il~~ls~~i~~G~i--~~iiGpNG~GKSTLLk~l~g-~l~p~~G~V~l~g~~i~--~~~~kelAk~ia~vpQ~~~~~~   89 (258)
T COG1120          15 KPILDDLSFSIPKGEI--TGILGPNGSGKSTLLKCLAG-LLKPKSGEVLLDGKDIA--SLSPKELAKKLAYVPQSPSAPF   89 (258)
T ss_pred             eeEEecceEEecCCcE--EEEECCCCCCHHHHHHHHhc-cCCCCCCEEEECCCchh--hcCHHHHhhhEEEeccCCCCCC
Confidence            3344455555555655  88999999999999999998 67888899999887554  111000 0011111110     


Q ss_pred             --ceeeeC-----C--C---CCCCcchhHHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcC
Q 018543           93 --NHVELS-----P--S---DAGFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKL  142 (354)
Q Consensus        93 --~~i~~~-----~--~---~~~~~~~~~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l  142 (354)
                        .+.++.     |  .   ..+..+...+.+.++.+     +...-..+|+            ..+++++++||+ ..|
T Consensus        90 ~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~L  169 (258)
T COG1120          90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL  169 (258)
T ss_pred             CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCcccc
Confidence              001110     0  0   00111111233333332     1111112222            257899999998 789


Q ss_pred             CHHHHHHHHHHHhhcc-C-ceeEEEEecCC
Q 018543          143 SREAQHSLRRTMEKYS-A-SCRLILCCNSS  170 (354)
Q Consensus       143 ~~~~~~~Ll~~le~~~-~-~~~~Il~~~~~  170 (354)
                      +...|-.+++.+.+.. . +..+|++.+++
T Consensus       170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDl  199 (258)
T COG1120         170 DIAHQIEVLELLRDLNREKGLTVVMVLHDL  199 (258)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            9999999999987654 2 34456655554

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.02  E-value=9.9e-10  Score=98.81  Aligned_cols=150  Identities=22%  Similarity=0.328  Sum_probs=88.6

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (354)
                      +.+.+.-.+..|..  +.|.||+|+||||+++++++ +..++.+.+.+++....  ....         .....+.+.++
T Consensus        22 ~l~~vsl~i~~Gei--~gllGpNGaGKSTLl~~l~G-l~~p~~G~v~i~G~~~~--~~~~---------~~~~~ig~v~q   87 (306)
T PRK13537         22 VVDGLSFHVQRGEC--FGLLGPNGAGKTTTLRMLLG-LTHPDAGSISLCGEPVP--SRAR---------HARQRVGVVPQ   87 (306)
T ss_pred             EEecceEEEeCCcE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEecc--cchH---------HHHhcEEEEec
Confidence            33444444555554  89999999999999999998 66788888888775432  0000         00112333333


Q ss_pred             CCCCcchhHHHHHHHHHHhc------------------CCC---------CCCC------------CCCceEEEEeCC-C
Q 018543          101 DAGFQDRYVVQEVIKEMAKN------------------RPI---------DTKG------------KRGFKVLVLNEV-D  140 (354)
Q Consensus       101 ~~~~~~~~~i~~~~~~~~~~------------------~~~---------~~~~------------~~~~~viiiDE~-d  140 (354)
                      +.......++.+.+..++..                  ..+         .+|+            ..+++++++||+ .
T Consensus        88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~  167 (306)
T PRK13537         88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT  167 (306)
T ss_pred             cCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence            33322222222222211110                  000         1111            157899999998 8


Q ss_pred             cCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       141 ~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .|++..+..+++.+.+.......|++++|.....+.+.+|+.++
T Consensus       168 gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il  211 (306)
T PRK13537        168 GLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVI  211 (306)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            89999999999999776443444555555555556777776544

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.01  E-value=2.2e-09  Score=90.18  Aligned_cols=146  Identities=18%  Similarity=0.204  Sum_probs=88.2

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc--CCCCcccccccccccccCCCccccccccccccCceeeeC
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF--GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (354)
                      +.+.+.-.+..|..  +.|.||+|+||||+++.+++ +.  .+..+.+.+++....  ..           .....+.+.
T Consensus        24 ~l~~~~~~i~~Ge~--~~l~G~nGsGKStLl~~i~G-l~~~~~~~G~i~~~g~~~~--~~-----------~~~~~i~~~   87 (194)
T cd03213          24 LLKNVSGKAKPGEL--TAIMGPSGAGKSTLLNALAG-RRTGLGVSGEVLINGRPLD--KR-----------SFRKIIGYV   87 (194)
T ss_pred             ceecceEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCCceEEEECCEeCc--hH-----------hhhheEEEc
Confidence            33444444444543  99999999999999999998 55  677777777765432  00           001123444


Q ss_pred             CCCCCCcchhHHHHHHHHHHhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEE
Q 018543           99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLI  164 (354)
Q Consensus        99 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~I  164 (354)
                      +++........+.+.+........  +++            ..+++++++||+ ..|+...+..+.+.+.+... +..+|
T Consensus        88 ~q~~~~~~~~t~~~~i~~~~~~~~--LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tii  165 (194)
T cd03213          88 PQDDILHPTLTVRETLMFAAKLRG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTII  165 (194)
T ss_pred             cCcccCCCCCcHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            444333332334443332111111  111            246799999997 78999999999999977543 45667


Q ss_pred             EEecCCCcccHHHhhhccee
Q 018543          165 LCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       165 l~~~~~~~l~~~l~sR~~~i  184 (354)
                      +++++.+.....+.+|+.++
T Consensus       166 i~sh~~~~~~~~~~d~v~~l  185 (194)
T cd03213         166 CSIHQPSSEIFELFDKLLLL  185 (194)
T ss_pred             EEecCchHHHHHhcCEEEEE
Confidence            77776654445556665443

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.01  E-value=8.4e-10  Score=92.40  Aligned_cols=152  Identities=18%  Similarity=0.242  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (354)
                      +++.+.-.+..|..  +-|.||+||||||++++++. +..++.+.+.+++.......+...         ....+.+..+
T Consensus        22 ~l~~VS~~i~~Ge~--lgivGeSGsGKSTL~r~l~G-l~~p~~G~I~~~G~~~~~~~~~~~---------~~~~VQmVFQ   89 (252)
T COG1124          22 ALNNVSLEIERGET--LGIVGESGSGKSTLARLLAG-LEKPSSGSILLDGKPLAPKKRAKA---------FYRPVQMVFQ   89 (252)
T ss_pred             hhcceeEEecCCCE--EEEEcCCCCCHHHHHHHHhc-ccCCCCceEEECCcccCccccchh---------hccceeEEec
Confidence            44444445555655  89999999999999999998 778899999998865441111110         0111222222


Q ss_pred             CC--CCcchhHHHHHHHHHH--------------------------hcCCCCCCC------------CCCceEEEEeCC-
Q 018543          101 DA--GFQDRYVVQEVIKEMA--------------------------KNRPIDTKG------------KRGFKVLVLNEV-  139 (354)
Q Consensus       101 ~~--~~~~~~~i~~~~~~~~--------------------------~~~~~~~~~------------~~~~~viiiDE~-  139 (354)
                      ++  ..++..++++.+.+-.                          ...|..+++            ..+++++|+||+ 
T Consensus        90 Dp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt  169 (252)
T COG1124          90 DPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT  169 (252)
T ss_pred             CCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence            22  1122222333222211                          112222332            147899999997 


Q ss_pred             CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhcceee
Q 018543          140 DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNIR  185 (354)
Q Consensus       140 d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i~  185 (354)
                      ..|+...|..+++++.+..  .+..+++++++. .+...+++||.++.
T Consensus       170 SaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~  216 (252)
T COG1124         170 SALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMD  216 (252)
T ss_pred             hhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeee
Confidence            7889999998888885543  234667766654 56678888886544

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.01  E-value=3e-10  Score=95.36  Aligned_cols=57  Identities=19%  Similarity=0.409  Sum_probs=47.2

Q ss_pred             cccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543           15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (354)
Q Consensus        15 ~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~   74 (354)
                      -+++..+++.+.-.++.|.+  +.|.||+||||||+.+++-+ +..++.+.+.+++.+..
T Consensus        10 ~y~~~~av~~v~l~I~~gef--~vliGpSGsGKTTtLkMINr-Liept~G~I~i~g~~i~   66 (309)
T COG1125          10 RYGNKKAVDDVNLTIEEGEF--LVLIGPSGSGKTTTLKMINR-LIEPTSGEILIDGEDIS   66 (309)
T ss_pred             hcCCceeeeeeeEEecCCeE--EEEECCCCCcHHHHHHHHhc-ccCCCCceEEECCeecc
Confidence            34566667777777777776  89999999999999999977 88999999999988665

>PRK08181 transposase; Validated

Probab=98.99  E-value=1.4e-09  Score=95.09  Aligned_cols=130  Identities=17%  Similarity=0.279  Sum_probs=72.8

Q ss_pred             HHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCC
Q 018543           24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG  103 (354)
Q Consensus        24 ~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  103 (354)
                      .+..|++.+  .+++|+||+|+|||+++.++++++...+...+.+....+.            .        .+......
T Consensus        98 ~~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~------------~--------~l~~a~~~  155 (269)
T PRK08181         98 AGDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV------------Q--------KLQVARRE  155 (269)
T ss_pred             HHHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHH------------H--------HHHHHHhC
Confidence            334566644  4599999999999999999999774332111110000000            0        00000000


Q ss_pred             CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC--CHHHHHHHHHHHhhccCceeEEEEecCCC----------
Q 018543          104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--SREAQHSLRRTMEKYSASCRLILCCNSSS----------  171 (354)
Q Consensus       104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l--~~~~~~~Ll~~le~~~~~~~~Il~~~~~~----------  171 (354)
                          ....+.++.+           .+..++||||++..  +...+..|+.+++....+..+|++||.+.          
T Consensus       156 ----~~~~~~l~~l-----------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~D~  220 (269)
T PRK08181        156 ----LQLESAIAKL-----------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPDP  220 (269)
T ss_pred             ----CcHHHHHHHH-----------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcCCc
Confidence                0011112111           24579999999765  45566789999976544567888888764          


Q ss_pred             cccHHHhhh----cceeeecCCC
Q 018543          172 KVTEAIRSR----CLNIRINSPT  190 (354)
Q Consensus       172 ~l~~~l~sR----~~~i~~~~~~  190 (354)
                      .+..++.||    |.++.|...+
T Consensus       221 ~~a~aildRL~h~~~~i~~~g~s  243 (269)
T PRK08181        221 AMTLAAVDRLVHHATIFEMNVES  243 (269)
T ss_pred             cchhhHHHhhhcCceEEecCCcc
Confidence            122344555    4567776644

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.98  E-value=1.7e-09  Score=98.53  Aligned_cols=136  Identities=21%  Similarity=0.297  Sum_probs=80.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH-
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK-  115 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~-  115 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++....  .....         ....+.+.+++.......++.+.+. 
T Consensus        70 ~gLlGpNGaGKSTLl~~L~G-l~~p~~G~i~i~G~~~~--~~~~~---------~~~~ig~v~q~~~~~~~~tv~e~l~~  137 (340)
T PRK13536         70 FGLLGPNGAGKSTIARMILG-MTSPDAGKITVLGVPVP--ARARL---------ARARIGVVPQFDNLDLEFTVRENLLV  137 (340)
T ss_pred             EEEECCCCCCHHHHHHHHHc-CCCCCceEEEECCEECC--cchHH---------HhccEEEEeCCccCCCCCcHHHHHHH
Confidence            89999999999999999998 66788888888776432  00000         0011222222222211111111111 


Q ss_pred             -----------------HHHhcCCC---------CCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543          116 -----------------EMAKNRPI---------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       116 -----------------~~~~~~~~---------~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~  156 (354)
                                       .+.....+         .+|+            ..+++++|+||+ ..|++..+..+++.+.+
T Consensus       138 ~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~  217 (340)
T PRK13536        138 FGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS  217 (340)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence                             11111111         1111            157899999998 88999999999999977


Q ss_pred             ccCceeEEEEecCCCcccHHHhhhccee
Q 018543          157 YSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       157 ~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .......|++++|.....+.+.+|+.++
T Consensus       218 l~~~g~tilisSH~l~e~~~~~d~i~il  245 (340)
T PRK13536        218 LLARGKTILLTTHFMEEAERLCDRLCVL  245 (340)
T ss_pred             HHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            6443445555555555667777887544

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.98  E-value=2.6e-08  Score=78.00  Aligned_cols=153  Identities=15%  Similarity=0.221  Sum_probs=82.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC-----cc--hhH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF-----QD--RYV  109 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~--~~~  109 (354)
                      ++++||||+||||++..++..+...+.....+-+.++.  ....+.++.+..+.++..-.+...+.+.     +.  ...
T Consensus         8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR--~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~   85 (179)
T COG1618           8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR--EGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG   85 (179)
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee--cCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence            89999999999999999999886554332223333333  4445555666555544332222111111     11  011


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---CHHHHHHHHHHHhhccCceeEEEEecCC--CcccHHHhhhccee
Q 018543          110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNSS--SKVTEAIRSRCLNI  184 (354)
Q Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~--~~l~~~l~sR~~~i  184 (354)
                      ..++.-...+..      ....+++||||+..|   ++....++-.+|..   ..++|.+-+..  +.+...++++..++
T Consensus        86 le~i~~~al~rA------~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~---~kpliatlHrrsr~P~v~~ik~~~~v~  156 (179)
T COG1618          86 LEEIAIPALRRA------LEEADVIIIDEIGPMELKSKKFREAVEEVLKS---GKPLIATLHRRSRHPLVQRIKKLGGVY  156 (179)
T ss_pred             HHHHhHHHHHHH------hhcCCEEEEecccchhhccHHHHHHHHHHhcC---CCcEEEEEecccCChHHHHhhhcCCEE
Confidence            221211111110      122489999999766   44455555555543   23356655544  45777888887766


Q ss_pred             eecCCCHHHHHHHHHHHH
Q 018543          185 RINSPTEEQIVKVLEFIA  202 (354)
Q Consensus       185 ~~~~~~~~~~~~~L~~~~  202 (354)
                      -|  ++++..-.++.+++
T Consensus       157 v~--lt~~NR~~i~~~Il  172 (179)
T COG1618         157 VF--LTPENRNRILNEIL  172 (179)
T ss_pred             EE--EccchhhHHHHHHH
Confidence            65  44444445555544

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=98.98  E-value=3.5e-08  Score=94.55  Aligned_cols=197  Identities=16%  Similarity=0.182  Sum_probs=119.5

Q ss_pred             CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      .+.+++|.....+.+...+..  ....+++++|++|+||+++|+++...........+.++|..+.              
T Consensus       136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~--------------  201 (469)
T PRK10923        136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIP--------------  201 (469)
T ss_pred             ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCC--------------
Confidence            456788876665555544432  2223499999999999999999877432222222233322111              


Q ss_pred             cccCceeeeCCCCCCCcchhHHHHHHHHHHhc----CC--CCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc----
Q 018543           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKN----RP--IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----  158 (354)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~----~~--~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~----  158 (354)
                                       ....-.+++......    ..  ...........++|||++.|+...|..|++.+++..    
T Consensus       202 -----------------~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~  264 (469)
T PRK10923        202 -----------------KDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRV  264 (469)
T ss_pred             -----------------HHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeC
Confidence                             000000000000000    00  000011233578999999999999999999997632    


Q ss_pred             -------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCCCH--HHHHHHHHHHHH----HcCC---CCCHHH
Q 018543          159 -------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAK----KEGL---QLPSGF  213 (354)
Q Consensus       159 -------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~~L~~~~~----~~~~---~i~~~~  213 (354)
                             .++++|++++...       .+.+.+..|+.  .|.+||+..  +++..++.+.+.    +.+.   .+++++
T Consensus       265 ~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a  344 (469)
T PRK10923        265 GGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPET  344 (469)
T ss_pred             CCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence                   2357888876542       46678888864  577777743  455555544433    3332   478999


Q ss_pred             HHHHHHH-cCCCHHHHHHHHHHHHhc
Q 018543          214 ATRLAEK-SNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       214 l~~i~~~-s~gd~R~ai~~L~~~~~~  238 (354)
                      +..+..+ ..||+|+..+.++.++..
T Consensus       345 ~~~L~~~~wpgNv~eL~~~i~~~~~~  370 (469)
T PRK10923        345 EAALTRLAWPGNVRQLENTCRWLTVM  370 (469)
T ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHh
Confidence            9999885 589999999999988764

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.98  E-value=4.6e-10  Score=100.96  Aligned_cols=142  Identities=18%  Similarity=0.273  Sum_probs=81.0

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  107 (354)
                      .+..|..  +.|.||+|+||||+++++++ +..++.+.+.+++....  ....    ..     ...+.+.+++......
T Consensus        15 ~i~~Ge~--~~l~G~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~----~~-----~~~i~~~~q~~~~~~~   80 (302)
T TIGR01188        15 KVREGEV--FGFLGPNGAGKTTTIRMLTT-LLRPTSGTARVAGYDVV--REPR----KV-----RRSIGIVPQYASVDED   80 (302)
T ss_pred             EEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcc--cCHH----HH-----HhhcEEecCCCCCCCC
Confidence            3444544  89999999999999999998 66778888888775432  1000    00     0112222222221111


Q ss_pred             hH----------------------HHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543          108 YV----------------------VQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (354)
Q Consensus       108 ~~----------------------i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (354)
                      .+                      +.++++.+.-     .....+|+            ..+++++++||+ ..|++...
T Consensus        81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~  160 (302)
T TIGR01188        81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR  160 (302)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence            11                      2222222110     00001121            157899999998 88999999


Q ss_pred             HHHHHHHhhccCc-eeEEEEecCCCcccHHHhhhccee
Q 018543          148 HSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       148 ~~Ll~~le~~~~~-~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ..+.+.+.+.... ..+|+++++ ......+.+|+.++
T Consensus       161 ~~l~~~l~~~~~~g~tvi~~sH~-~~~~~~~~d~v~~l  197 (302)
T TIGR01188       161 RAIWDYIRALKEEGVTILLTTHY-MEEADKLCDRIAII  197 (302)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCC-HHHHHHhCCEEEEE
Confidence            9999999776433 445554444 44555666776443

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK06526 transposase; Provisional

Probab=98.97  E-value=1.2e-09  Score=95.09  Aligned_cols=62  Identities=19%  Similarity=0.263  Sum_probs=41.4

Q ss_pred             CceEEEEeCCCcC--CHHHHHHHHHHHhhccCceeEEEEecCCCc----------ccHHHhhh----cceeeecCCCH
Q 018543          130 GFKVLVLNEVDKL--SREAQHSLRRTMEKYSASCRLILCCNSSSK----------VTEAIRSR----CLNIRINSPTE  191 (354)
Q Consensus       130 ~~~viiiDE~d~l--~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~----------l~~~l~sR----~~~i~~~~~~~  191 (354)
                      ++.++||||++.+  ++..++.|+.++.....+..+|++||.+..          +..++.+|    |.++.|...+.
T Consensus       159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~  236 (254)
T PRK06526        159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSY  236 (254)
T ss_pred             cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCc
Confidence            4589999999876  467778888888654344568888887642          22234454    45677766554

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=98.97  E-value=2.8e-08  Score=89.82  Aligned_cols=188  Identities=16%  Similarity=0.139  Sum_probs=104.5

Q ss_pred             CCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc--ccCCCcccccccccc
Q 018543           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK--IDAGSRNIDLELTTL   89 (354)
Q Consensus        12 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   89 (354)
                      |.-++||+..+..|-...-.-.+..+|+.|+.|+||||++|+++. |+.+... +.  +..|.  ++.|. ..|..|...
T Consensus        16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~-LLp~~~~-V~--gc~f~cdP~~P~-~~c~~c~~k   90 (423)
T COG1239          16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALAD-LLPEIEV-VI--GCPFNCDPDDPE-EMCDECRAK   90 (423)
T ss_pred             hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHH-hCCccce-ec--CCCCCCCCCChh-hhhHHHHhh
Confidence            566789998887665443333444599999999999999999998 4443321 11  21121  11120 011111111


Q ss_pred             --------ccCceeeeCCCCCCC-----cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543           90 --------SSANHVELSPSDAGF-----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (354)
Q Consensus        90 --------~~~~~i~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~  156 (354)
                              .....+.+.....+.     .....+...++.-.......+-..++..|+.+||+..|+...++.|+..+++
T Consensus        91 ~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aae  170 (423)
T COG1239          91 GDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAE  170 (423)
T ss_pred             ccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHh
Confidence                    000111111111111     1111233333320010011111356778999999999999999999999976


Q ss_pred             c-------------cCceeEEEEecCCC-cccHHHhhhc-ceeeecCC-CHHHHHHHHHHHHHH
Q 018543          157 Y-------------SASCRLILCCNSSS-KVTEAIRSRC-LNIRINSP-TEEQIVKVLEFIAKK  204 (354)
Q Consensus       157 ~-------------~~~~~~Il~~~~~~-~l~~~l~sR~-~~i~~~~~-~~~~~~~~L~~~~~~  204 (354)
                      .             +.++.+|.+.|-.. .+.+.|++|+ ..+...++ +.++...++.+...-
T Consensus       171 G~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f  234 (423)
T COG1239         171 GVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF  234 (423)
T ss_pred             CCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence            2             23344444455443 7999999996 45776554 566777777776654

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.97  E-value=4.6e-09  Score=99.35  Aligned_cols=167  Identities=19%  Similarity=0.241  Sum_probs=98.1

Q ss_pred             CCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (354)
                      ..|.+++|+..+++.+.-.+..|  .+++|.||||+|||++++.++. +..+..+...+++..+.          ++...
T Consensus       188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~g-llpp~~g~e~le~~~i~----------s~~g~  254 (506)
T PRK09862        188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRING-LLPDLSNEEALESAAIL----------SLVNA  254 (506)
T ss_pred             cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhc-cCCCCCCcEEEecchhh----------hhhcc
Confidence            36778899998888877665544  4599999999999999999987 44444444333332221          00000


Q ss_pred             -ccCceeeeCCCCCCCc-chhHHHHHHHHHHhcCCC--CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc--------
Q 018543           90 -SSANHVELSPSDAGFQ-DRYVVQEVIKEMAKNRPI--DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY--------  157 (354)
Q Consensus        90 -~~~~~i~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~--------  157 (354)
                       .....+...|  +... ...+...++   ......  ..-......++++||++.+++..++.|++.||+.        
T Consensus       255 ~~~~~~~~~rP--fr~ph~~~s~~~l~---GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g  329 (506)
T PRK09862        255 ESVQKQWRQRP--FRSPHHSASLTAMV---GGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTR  329 (506)
T ss_pred             ccccCCcCCCC--ccCCCccchHHHHh---CCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCC
Confidence             0000000000  0000 000011111   000000  0001234579999999999999999999999763        


Q ss_pred             -----cCceeEEEEecCCC---------------------cccHHHhhhcce-eeecCCCHHHH
Q 018543          158 -----SASCRLILCCNSSS---------------------KVTEAIRSRCLN-IRINSPTEEQI  194 (354)
Q Consensus       158 -----~~~~~~Il~~~~~~---------------------~l~~~l~sR~~~-i~~~~~~~~~~  194 (354)
                           +.++.+|.++|...                     ++..++.+|+.. +.+++++.+++
T Consensus       330 ~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l  393 (506)
T PRK09862        330 AKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGIL  393 (506)
T ss_pred             cceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHH
Confidence                 34566777777542                     477799999974 88888887643

>PF13173 AAA_14: AAA domain

Probab=98.97  E-value=3.9e-09  Score=82.40  Aligned_cols=120  Identities=20%  Similarity=0.351  Sum_probs=74.5

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK  115 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~  115 (354)
                      .++++||.|+||||+++.+++.+. +....                             +.++..+..... ....++.+
T Consensus         4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~-----------------------------~yi~~~~~~~~~-~~~~~~~~   52 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQLAKDLL-PPENI-----------------------------LYINFDDPRDRR-LADPDLLE   52 (128)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc-ccccc-----------------------------eeeccCCHHHHH-HhhhhhHH
Confidence            389999999999999999998774 11111                             222222211110 00000122


Q ss_pred             HHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCc----ccHHHhhhcceeeecCCCH
Q 018543          116 EMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK----VTEAIRSRCLNIRINSPTE  191 (354)
Q Consensus       116 ~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~----l~~~l~sR~~~i~~~~~~~  191 (354)
                      .+.+..      ..+..+|||||++.++ +....+....+.. .+..+|++++....    ..+.+..|+..+++.|++-
T Consensus        53 ~~~~~~------~~~~~~i~iDEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf  124 (128)
T PF13173_consen   53 YFLELI------KPGKKYIFIDEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSF  124 (128)
T ss_pred             HHHHhh------ccCCcEEEEehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCH
Confidence            222221      1245899999999885 5666666666654 56788888776653    4566777888999999997


Q ss_pred             HHH
Q 018543          192 EQI  194 (354)
Q Consensus       192 ~~~  194 (354)
                      .|.
T Consensus       125 ~E~  127 (128)
T PF13173_consen  125 REF  127 (128)
T ss_pred             HHh
Confidence            764

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.96  E-value=2.2e-09  Score=88.95  Aligned_cols=134  Identities=15%  Similarity=0.162  Sum_probs=77.0

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY  108 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  108 (354)
                      +..|..  +.+.||+|+||||+++.+++ +..+..+.+.+++....  ..         .......+.+.+++..... .
T Consensus        25 i~~Ge~--~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~--~~---------~~~~~~~i~~~~q~~~~~~-~   89 (178)
T cd03247          25 LKQGEK--IALLGRSGSGKSTLLQLLTG-DLKPQQGEITLDGVPVS--DL---------EKALSSLISVLNQRPYLFD-T   89 (178)
T ss_pred             EcCCCE--EEEECCCCCCHHHHHHHHhc-cCCCCCCEEEECCEEHH--HH---------HHHHHhhEEEEccCCeeec-c
Confidence            344443  99999999999999999998 55677777777665322  00         0000011222222221111 1


Q ss_pred             HHHHHH---------HHHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHh
Q 018543          109 VVQEVI---------KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR  178 (354)
Q Consensus       109 ~i~~~~---------~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~  178 (354)
                      .+.+.+         +.+.-...    ...+++++++||+ ..|+......+.+.+.+...+..+|+++++.+.+ + ..
T Consensus        90 tv~~~i~~~LS~G~~qrv~lara----l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~-~~  163 (178)
T cd03247          90 TLRNNLGRRFSGGERQRLALARI----LLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI-E-HM  163 (178)
T ss_pred             cHHHhhcccCCHHHHHHHHHHHH----HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-H-hC
Confidence            122111         00000000    1246799999998 7899999999999997765556677777776543 3 34


Q ss_pred             hhcce
Q 018543          179 SRCLN  183 (354)
Q Consensus       179 sR~~~  183 (354)
                      +|+..
T Consensus       164 d~~~~  168 (178)
T cd03247         164 DKILF  168 (178)
T ss_pred             CEEEE
Confidence            55433

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.96  E-value=2.2e-09  Score=89.28  Aligned_cols=137  Identities=18%  Similarity=0.185  Sum_probs=77.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC---CCcchhHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA---GFQDRYVVQE  112 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~i~~  112 (354)
                      .+.|.||+|+||||+++++++ +..+..+.+.+++....  .....       ......+.+.+++.   ......++.+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~--~~~~~-------~~~~~~i~~~~q~~~~~~~~~~~t~~e   97 (182)
T cd03215          28 IVGIAGLVGNGQTELAEALFG-LRPPASGEITLDGKPVT--RRSPR-------DAIRAGIAYVPEDRKREGLVLDLSVAE   97 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECC--ccCHH-------HHHhCCeEEecCCcccCcccCCCcHHH
Confidence            399999999999999999998 55677777777765433  00000       00011233433331   1222223444


Q ss_pred             HHHHHHhcCC-------CCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543          113 VIKEMAKNRP-------IDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       113 ~~~~~~~~~~-------~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+........       +...-..+++++++||+ ..|++.....+.+.+.+... ...+|+++++. ...+.+.+|+.+
T Consensus        98 ~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~  176 (182)
T cd03215          98 NIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILV  176 (182)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEE
Confidence            3322110000       00001246799999997 78999999999998876543 34556655554 333444455433

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.96  E-value=1.5e-09  Score=89.98  Aligned_cols=131  Identities=18%  Similarity=0.256  Sum_probs=73.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH-
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK-  115 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~-  115 (354)
                      +.|.||+|+||||+++++++ +..+..+.+.+++....  ....      ........+.+.+++........+.+.+. 
T Consensus        29 ~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~--~~~~------~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~   99 (178)
T cd03229          29 VALLGPSGSGKSTLLRCIAG-LEEPDSGSILIDGEDLT--DLED------ELPPLRRRIGMVFQDFALFPHLTVLENIAL   99 (178)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcc--ccch------hHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence            89999999999999999998 55667777777765432  0000      00000112333333322221112222211 


Q ss_pred             --------HHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhc
Q 018543          116 --------EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRC  181 (354)
Q Consensus       116 --------~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~  181 (354)
                              .+.-...    ...+++++++||+ ..|+...+..+.+.+.+...  +..+|+++++.+ ..+.+.+++
T Consensus       100 ~lS~G~~qr~~la~a----l~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i  171 (178)
T cd03229         100 GLSGGQQQRVALARA----LAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRV  171 (178)
T ss_pred             cCCHHHHHHHHHHHH----HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence                    0000000    1246699999997 78999999999999977544  355666666543 333344443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.96  E-value=7.1e-10  Score=98.95  Aligned_cols=149  Identities=17%  Similarity=0.308  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (354)
                      +++.+.-.++.|.+  +.|.||+||||||+.+++|. |..++.+.+.+++..+.--.|..+            .+.+..+
T Consensus        18 ~l~~i~l~i~~Gef--~vllGPSGcGKSTlLr~IAG-Le~~~~G~I~i~g~~vt~l~P~~R------------~iamVFQ   82 (338)
T COG3839          18 VLKDVNLDIEDGEF--VVLLGPSGCGKSTLLRMIAG-LEEPTSGEILIDGRDVTDLPPEKR------------GIAMVFQ   82 (338)
T ss_pred             eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChhHC------------CEEEEeC
Confidence            44445555666766  99999999999999999998 889999999999987762223322            2333333


Q ss_pred             CCCCcchhHHH------------------HHHHHHHhc---------CCCCCCCC------------CCceEEEEeCC-C
Q 018543          101 DAGFQDRYVVQ------------------EVIKEMAKN---------RPIDTKGK------------RGFKVLVLNEV-D  140 (354)
Q Consensus       101 ~~~~~~~~~i~------------------~~~~~~~~~---------~~~~~~~~------------~~~~viiiDE~-d  140 (354)
                      ++..++.+++.                  +-+++++..         .|..+|+.            .+++++++||+ .
T Consensus        83 ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS  162 (338)
T COG3839          83 NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLS  162 (338)
T ss_pred             CccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence            33333332222                  222222222         22223321            47899999998 6


Q ss_pred             cCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcceee
Q 018543          141 KLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNIR  185 (354)
Q Consensus       141 ~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i~  185 (354)
                      .|+......++..+.+...  ...+|.+|++.. -.-++-+|..+..
T Consensus       163 nLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~  208 (338)
T COG3839         163 NLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN  208 (338)
T ss_pred             HhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe
Confidence            6887776666666644322  245666666543 2335556654433

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.95  E-value=2.7e-09  Score=90.87  Aligned_cols=55  Identities=18%  Similarity=0.284  Sum_probs=37.9

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+... +..+|+++++. .....+.+|+.++
T Consensus       145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l  201 (210)
T cd03269         145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLL  201 (210)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEE
Confidence            47899999998 78999999999999977543 34455555544 3444455555433

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.95  E-value=2.7e-09  Score=87.76  Aligned_cols=125  Identities=22%  Similarity=0.368  Sum_probs=73.4

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY  108 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  108 (354)
                      +..|..  +.+.||+|+||||+++++++ +..+..+.+.+++....  .        .........+.+.+++..... .
T Consensus        25 i~~G~~--~~l~G~nGsGKstLl~~i~G-~~~~~~G~i~~~g~~~~--~--------~~~~~~~~~i~~~~~~~~~~~-~   90 (171)
T cd03228          25 IKPGEK--VAIVGPSGSGKSTLLKLLLR-LYDPTSGEILIDGVDLR--D--------LDLESLRKNIAYVPQDPFLFS-G   90 (171)
T ss_pred             EcCCCE--EEEECCCCCCHHHHHHHHHc-CCCCCCCEEEECCEEhh--h--------cCHHHHHhhEEEEcCCchhcc-c
Confidence            344443  99999999999999999998 55667777776665332  0        000000112233333322211 1


Q ss_pred             HHHHHH------HH--HHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcc
Q 018543          109 VVQEVI------KE--MAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (354)
Q Consensus       109 ~i~~~~------~~--~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l  173 (354)
                      .+.+.+      +.  ++..      ...+++++++||+ ..|++.....+.+.+.+......+|+++++.+.+
T Consensus        91 t~~e~lLS~G~~~rl~la~a------l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~  158 (171)
T cd03228          91 TIRENILSGGQRQRIAIARA------LLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI  158 (171)
T ss_pred             hHHHHhhCHHHHHHHHHHHH------HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence            122111      00  1111      1246689999997 7899999999999997765555666666665543

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15115 response regulator GlrR; Provisional

Probab=98.95  E-value=6.6e-08  Score=92.04  Aligned_cols=109  Identities=18%  Similarity=0.259  Sum_probs=76.7

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCC
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSP  189 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~  189 (354)
                      ....++|||++.|+...|..|++.+++..           .++++|++++...       .+.+.+..|..  .|.+||+
T Consensus       228 ~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpL  307 (444)
T PRK15115        228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPAL  307 (444)
T ss_pred             CCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCCh
Confidence            34689999999999999999999997632           1457777776531       23344555543  5666766


Q ss_pred             CH--HHHHHHHHHHH----HHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 018543          190 TE--EQIVKVLEFIA----KKEG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ  238 (354)
Q Consensus       190 ~~--~~~~~~L~~~~----~~~~---~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~  238 (354)
                      ..  +++..++...+    .+.+   ..+++++++.+..+. .||+|+..+.++.++..
T Consensus       308 r~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~  366 (444)
T PRK15115        308 AERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL  366 (444)
T ss_pred             HhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence            43  35544444433    3233   248999999999987 99999999999987754

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=98.95  E-value=5.4e-08  Score=93.16  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=82.7

Q ss_pred             ceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCCC
Q 018543          131 FKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT  190 (354)
Q Consensus       131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~  190 (354)
                      ...++|||++.|+.+.|..|++++++..           .++++|++++...       .+.+.+..|..  .|++||+.
T Consensus       229 ~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr  308 (463)
T TIGR01818       229 GGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLR  308 (463)
T ss_pred             CCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcc
Confidence            4679999999999999999999997632           2457777776542       45567778764  68888887


Q ss_pred             --HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC
Q 018543          191 --EEQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       191 --~~~~~~~L~~~~~----~~~---~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~~  239 (354)
                        .+++..++...+.    ..+   ..+++++++.|.++. .||+|...+.++.++...
T Consensus       309 ~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~  367 (463)
T TIGR01818       309 ERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA  367 (463)
T ss_pred             cchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence              6677766655443    333   468899999999864 899999999999887653

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=98.94  E-value=5.5e-08  Score=90.48  Aligned_cols=204  Identities=18%  Similarity=0.158  Sum_probs=121.0

Q ss_pred             CCCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccc
Q 018543            9 PKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (354)
Q Consensus         9 P~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
                      +-+|++++|.......+...++.  .....+|+.|.+||||.-+|+++-+.--..+...+.++|..+.       .    
T Consensus       241 ~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP-------e----  309 (560)
T COG3829         241 KYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP-------E----  309 (560)
T ss_pred             ccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC-------H----
Confidence            45899999987766655555543  2233499999999999999999976322222223333332111       0    


Q ss_pred             cccccCceeeeCCCCCCCcchhHHHHHHHHHHhcC-CCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc--------
Q 018543           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR-PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY--------  157 (354)
Q Consensus        87 ~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~--------  157 (354)
                      ..+.+ ....+..   |...+          +... ...+...++..-+|+||+..|+...|..|++.|++.        
T Consensus       310 ~LlES-ELFGye~---GAFTG----------A~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t  375 (560)
T COG3829         310 TLLES-ELFGYEK---GAFTG----------ASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGT  375 (560)
T ss_pred             HHHHH-HHhCcCC---ccccc----------cccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCC
Confidence            00000 0000100   00000          0000 000001234467999999999999999999999763        


Q ss_pred             ---cCceeEEEEecCCC-------cccHHHhhhcce--eeecCCC--HHHHHHHHHHHHH----HcC--C-CCCHHHHHH
Q 018543          158 ---SASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSPT--EEQIVKVLEFIAK----KEG--L-QLPSGFATR  216 (354)
Q Consensus       158 ---~~~~~~Il~~~~~~-------~l~~~l~sR~~~--i~~~~~~--~~~~~~~L~~~~~----~~~--~-~i~~~~l~~  216 (354)
                         +..+++|-+||...       ++-+.+--|..+  |.+||+-  ++++.......+.    +.+  + .++++++..
T Consensus       376 ~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~  455 (560)
T COG3829         376 KPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALAL  455 (560)
T ss_pred             CceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHH
Confidence               24577888888653       355555566654  5566653  3444444433333    333  3 378999999


Q ss_pred             HHHH-cCCCHHHHHHHHHHHHh
Q 018543          217 LAEK-SNRSLRRAILSFETCRV  237 (354)
Q Consensus       217 i~~~-s~gd~R~ai~~L~~~~~  237 (354)
                      +.++ ..||+|..-|.++.+..
T Consensus       456 L~~y~WPGNVRELeNviER~v~  477 (560)
T COG3829         456 LLRYDWPGNVRELENVIERAVN  477 (560)
T ss_pred             HHhCCCCchHHHHHHHHHHHHh
Confidence            8885 69999999999998874

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.94  E-value=4e-09  Score=89.18  Aligned_cols=142  Identities=14%  Similarity=0.170  Sum_probs=83.8

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcC---CCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG---PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF  104 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  104 (354)
                      .+..|..  +.+.||+|+||||+++.+++. ..   +..+.+.+++....  .        .. ......+.+.+++...
T Consensus        29 ~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~-~~~~~~~~G~i~i~g~~~~--~--------~~-~~~~~~i~~~~q~~~~   94 (202)
T cd03233          29 VVKPGEM--VLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK--E--------FA-EKYPGEIIYVSEEDVH   94 (202)
T ss_pred             EECCCcE--EEEECCCCCCHHHHHHHhccc-CCCCCCcceEEEECCEECc--c--------ch-hhhcceEEEEeccccc
Confidence            3444443  999999999999999999984 44   56677777665332  0        00 0011123444443333


Q ss_pred             cchhHHHHHHHHHHh----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEE
Q 018543          105 QDRYVVQEVIKEMAK----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL  165 (354)
Q Consensus       105 ~~~~~i~~~~~~~~~----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il  165 (354)
                      ....++.+.+.....    .....+++            ..+++++++||+ ..|++..+..+.+.+++...  ...+|+
T Consensus        95 ~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii  174 (202)
T cd03233          95 FPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFV  174 (202)
T ss_pred             CCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            332345554433221    11111221            147799999997 88999999999999987543  345666


Q ss_pred             EecCCCcccHHHhhhcce
Q 018543          166 CCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       166 ~~~~~~~l~~~l~sR~~~  183 (354)
                      ++++.......+.+|+.+
T Consensus       175 ~~~h~~~~~~~~~d~i~~  192 (202)
T cd03233         175 SLYQASDEIYDLFDKVLV  192 (202)
T ss_pred             EEcCCHHHHHHhCCeEEE
Confidence            666654444555555543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.94  E-value=6.7e-09  Score=85.36  Aligned_cols=115  Identities=17%  Similarity=0.214  Sum_probs=69.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~  116 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++..                      +.+.++.........  +.+. 
T Consensus        28 ~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~----------------------i~~~~q~~~LSgGq~--qrv~-   81 (177)
T cd03222          28 IGIVGPNGTGKTTAVKILAG-QLIPNGDNDEWDGIT----------------------PVYKPQYIDLSGGEL--QRVA-   81 (177)
T ss_pred             EEEECCCCChHHHHHHHHHc-CCCCCCcEEEECCEE----------------------EEEEcccCCCCHHHH--HHHH-
Confidence            89999999999999999998 556776766665432                      122222211221111  1111 


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-c-eeEEEEecCCCcccHHHhhhccee
Q 018543          117 MAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-S-CRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       117 ~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~-~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ++...      ..+++++++||+ ..|++.....+.+.+.+... . ..+|+++++. .....+.+|+.++
T Consensus        82 laral------~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l  145 (177)
T cd03222          82 IAAAL------LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVF  145 (177)
T ss_pred             HHHHH------hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEE
Confidence            11111      235689999998 78999999988888876532 2 4555555554 3334555555433

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=98.93  E-value=4.6e-08  Score=95.32  Aligned_cols=107  Identities=10%  Similarity=0.143  Sum_probs=71.8

Q ss_pred             CCceEEEEeCCCcCCHHHHHHHHHHHhhcc-------------CceeEEEEecCCC---cccHHHhhhcce-eeec-CCC
Q 018543          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLILCCNSSS---KVTEAIRSRCLN-IRIN-SPT  190 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~~---~l~~~l~sR~~~-i~~~-~~~  190 (354)
                      .+..+++|||++.+++..|+.|+..|++..             ..+.+|.++|..+   .+.+++.+|+.. +.+. +++
T Consensus        83 A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~  162 (589)
T TIGR02031        83 APRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVAS  162 (589)
T ss_pred             CCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCC
Confidence            344699999999999999999999997642             3456666666544   688999999854 4443 334


Q ss_pred             HHHHHHHHHHHHH-----------------------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHH
Q 018543          191 EEQIVKVLEFIAK-----------------------KEGLQLPSGFATRLAEKS---N-RSLRRAILSFETC  235 (354)
Q Consensus       191 ~~~~~~~L~~~~~-----------------------~~~~~i~~~~l~~i~~~s---~-gd~R~ai~~L~~~  235 (354)
                      .++..+++.+...                       ...+.++++.+++|++.+   + ..+|..+.++..+
T Consensus       163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~A  234 (589)
T TIGR02031       163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAA  234 (589)
T ss_pred             HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence            4444555544220                       125678888888877743   2 2478777776643

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.92  E-value=7.6e-09  Score=92.53  Aligned_cols=98  Identities=17%  Similarity=0.215  Sum_probs=57.9

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcC---
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEG---  206 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~---  206 (354)
                      ++-++|+|+++..  ...+.+...+.....++++|+||.+. .+..........+++++++.++..+.+.+.+....   
T Consensus       101 ~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~-~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~  177 (287)
T PF00931_consen  101 KRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDR-SVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESES  177 (287)
T ss_dssp             TSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCG-GGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS---
T ss_pred             ccceeeeeeeccc--cccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            3689999998743  34444555554444568888887764 34444443467899999999999999998875443   


Q ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHH
Q 018543          207 LQLPSGFATRLAEKSNRSLRRAILS  231 (354)
Q Consensus       207 ~~i~~~~l~~i~~~s~gd~R~ai~~  231 (354)
                      ..-.++.+..|++.++|.+ -|+..
T Consensus       178 ~~~~~~~~~~i~~~c~glP-Lal~~  201 (287)
T PF00931_consen  178 PEDLEDLAKEIVEKCGGLP-LALKL  201 (287)
T ss_dssp             -TTSCTHHHHHHHHTTT-H-HHHHH
T ss_pred             ccccccccccccccccccc-ccccc
Confidence            1112456789999998865 44443

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.92  E-value=1e-07  Score=83.41  Aligned_cols=109  Identities=15%  Similarity=0.227  Sum_probs=71.0

Q ss_pred             CceEEEEeCCCcC---CHHHHHHHHHHHhhcc--CceeEEEEecCCC----cccHHHhhhcceeeecCCCH-HHHHHHHH
Q 018543          130 GFKVLVLNEVDKL---SREAQHSLRRTMEKYS--ASCRLILCCNSSS----KVTEAIRSRCLNIRINSPTE-EQIVKVLE  199 (354)
Q Consensus       130 ~~~viiiDE~d~l---~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~----~l~~~l~sR~~~i~~~~~~~-~~~~~~L~  199 (354)
                      +.+++||||+|.+   +...|..++..+....  -...+|++.+..-    .-.+.+.||+..+.+++-.. ++....|.
T Consensus       145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~  224 (302)
T PF05621_consen  145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLA  224 (302)
T ss_pred             CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHH
Confidence            4589999999875   3344555555554332  2355666654332    45688999999999887653 34455554


Q ss_pred             HHHHHcCC----CC-CHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 018543          200 FIAKKEGL----QL-PSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       200 ~~~~~~~~----~i-~~~~l~~i~~~s~gd~R~ai~~L~~~~~~  238 (354)
                      ..-..--+    .+ +++....|...|+|.+.....+|..++..
T Consensus       225 s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~  268 (302)
T PF05621_consen  225 SFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIA  268 (302)
T ss_pred             HHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            43322111    22 46777899999999999999998877654

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.92  E-value=1.9e-08  Score=79.42  Aligned_cols=27  Identities=52%  Similarity=0.776  Sum_probs=23.6

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      .+++|+||||+||||+++.++..+...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            459999999999999999999977544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.92  E-value=3.8e-09  Score=94.98  Aligned_cols=141  Identities=19%  Similarity=0.243  Sum_probs=83.0

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY  108 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  108 (354)
                      +..|..  +.|.||+|+||||+++++++ +..++.+.+.+++....  .....         ....+.+.+++.......
T Consensus        25 i~~Gei--~~l~G~NGaGKTTLl~~l~G-l~~~~~G~i~i~g~~~~--~~~~~---------~~~~ig~~~q~~~l~~~~   90 (301)
T TIGR03522        25 AQKGRI--VGFLGPNGAGKSTTMKIITG-YLPPDSGSVQVCGEDVL--QNPKE---------VQRNIGYLPEHNPLYLDM   90 (301)
T ss_pred             EeCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcc--cChHH---------HHhceEEecCCCCCCCCC
Confidence            334443  99999999999999999998 66788888888776443  10000         011223333322222111


Q ss_pred             HHHHHHHH------------------HHhcCCC---------CCCC------------CCCceEEEEeCC-CcCCHHHHH
Q 018543          109 VVQEVIKE------------------MAKNRPI---------DTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (354)
Q Consensus       109 ~i~~~~~~------------------~~~~~~~---------~~~~------------~~~~~viiiDE~-d~l~~~~~~  148 (354)
                      .+.+.+..                  +.....+         .+++            ..+++++++||+ ..|++....
T Consensus        91 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~  170 (301)
T TIGR03522        91 YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLV  170 (301)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence            12222211                  1111000         1111            157899999998 889999999


Q ss_pred             HHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          149 SLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       149 ~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++.+.+..... .|++++|.....+.+.+|+.++
T Consensus       171 ~l~~~l~~~~~~~-tiii~sH~l~~~~~~~d~i~~l  205 (301)
T TIGR03522       171 EIRNVIKNIGKDK-TIILSTHIMQEVEAICDRVIII  205 (301)
T ss_pred             HHHHHHHHhcCCC-EEEEEcCCHHHHHHhCCEEEEE
Confidence            9999998775554 4555555555556777777544

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=98.92  E-value=1.3e-08  Score=93.28  Aligned_cols=204  Identities=19%  Similarity=0.175  Sum_probs=122.9

Q ss_pred             CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      .+.++||+..+...+...++-  .....+||.|..||||.-+|++|-..--..+...++++|..+.          + +.
T Consensus       221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP----------e-sL  289 (550)
T COG3604         221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP----------E-SL  289 (550)
T ss_pred             ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc----------h-HH
Confidence            467899998877766665542  2323499999999999999999976432233333444433211          0 00


Q ss_pred             cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc-----------
Q 018543           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-----------  157 (354)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~-----------  157 (354)
                      ..+    ++-...-|..        ...+.+...  .....+..-+|+||+.-|+...|..|++.+.+.           
T Consensus       290 lES----ELFGHeKGAF--------TGA~~~r~G--rFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~i  355 (550)
T COG3604         290 LES----ELFGHEKGAF--------TGAINTRRG--RFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTI  355 (550)
T ss_pred             HHH----HHhccccccc--------ccchhccCc--ceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCcee
Confidence            000    0000000000        000000000  001234467999999999999999999999653           


Q ss_pred             cCceeEEEEecCCC-------cccHHHhhhcce--eeecCCCH--HH---HH-HHHHHHHHHcCC---CCCHHHHHHHHH
Q 018543          158 SASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSPTE--EQ---IV-KVLEFIAKKEGL---QLPSGFATRLAE  219 (354)
Q Consensus       158 ~~~~~~Il~~~~~~-------~l~~~l~sR~~~--i~~~~~~~--~~---~~-~~L~~~~~~~~~---~i~~~~l~~i~~  219 (354)
                      .-.+++|.+||..-       ++-+.+--|..+  +.+||+-+  ++   +. .++++...+.|.   .+++++++.+.+
T Consensus       356 kVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~  435 (550)
T COG3604         356 KVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS  435 (550)
T ss_pred             EEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence            12477888888653       455666667655  45555532  22   22 334444444454   688999999998


Q ss_pred             H-cCCCHHHHHHHHHHHHhcC
Q 018543          220 K-SNRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       220 ~-s~gd~R~ai~~L~~~~~~~  239 (354)
                      . ..||+|...|.++.++...
T Consensus       436 y~wPGNVRELen~veRavlla  456 (550)
T COG3604         436 YEWPGNVRELENVVERAVLLA  456 (550)
T ss_pred             CCCCCcHHHHHHHHHHHHHHh
Confidence            5 5899999999999887743

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.92  E-value=2.4e-09  Score=91.46  Aligned_cols=153  Identities=18%  Similarity=0.325  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee---
Q 018543           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE---   96 (354)
Q Consensus        20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---   96 (354)
                      .+++.+.-.+..|.+  +.+.||+|+||||+++++.+ +..+..+.+.+.+.......+..    .+.++.+...+.   
T Consensus        18 ~vl~~i~l~v~~G~~--~~iiGPNGaGKSTLlK~iLG-ll~p~~G~i~~~g~~~~~~~~~~----~IgYVPQ~~~~d~~f   90 (254)
T COG1121          18 PVLEDISLSVEKGEI--TALIGPNGAGKSTLLKAILG-LLKPSSGEIKIFGKPVRKRRKRL----RIGYVPQKSSVDRSF   90 (254)
T ss_pred             eeeeccEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCcCCcceEEEccccccccccCC----eEEEcCcccccCCCC
Confidence            355555555666765  88999999999999999998 77888888887765433111000    111221111111   


Q ss_pred             ------eCCCC----CCC------cchhHHHHHHHHHHhc----CCC-CCCC------------CCCceEEEEeCC-CcC
Q 018543           97 ------LSPSD----AGF------QDRYVVQEVIKEMAKN----RPI-DTKG------------KRGFKVLVLNEV-DKL  142 (354)
Q Consensus        97 ------~~~~~----~~~------~~~~~i~~~~~~~~~~----~~~-~~~~------------~~~~~viiiDE~-d~l  142 (354)
                            +....    .+.      .++..+.+.++.+.-.    .++ .+|+            ..+++++++||+ ..+
T Consensus        91 P~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gv  170 (254)
T COG1121          91 PITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGV  170 (254)
T ss_pred             CcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccC
Confidence                  00000    000      0112334444332111    111 1222            257899999997 889


Q ss_pred             CHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhh
Q 018543          143 SREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSR  180 (354)
Q Consensus       143 ~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR  180 (354)
                      +...+..+.++|.+... ++.+++++++.+.+ ....+|
T Consensus       171 D~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v-~~~~D~  208 (254)
T COG1121         171 DVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV-MAYFDR  208 (254)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh-HhhCCE
Confidence            99999999999977654 44455555555443 444444

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.91  E-value=1.8e-09  Score=87.88  Aligned_cols=153  Identities=18%  Similarity=0.327  Sum_probs=74.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC-C-CC-cchhHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD-A-GF-QDRYVVQE  112 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~-~~~~~i~~  112 (354)
                      |++|+|+||+||||+++.++..+...+...-.+.+....  ....+.++.+..+.++....+...+ . +. ..++.+  
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr--~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v--   76 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVR--ENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFV--   76 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEE--TTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE--
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeeccc--CCCceEEEEEEECcCCCccccccccccccccCCCEEE--
Confidence            589999999999999999998774322111111111111  2223333444444333222221111 0 00 000111  


Q ss_pred             HHHHHHhcCCCCCC-CCCCceEEEEeCCCcC---CHHHHHHHHHHHhhccCceeEEEEecCC--CcccHHHhhh--ccee
Q 018543          113 VIKEMAKNRPIDTK-GKRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNSS--SKVTEAIRSR--CLNI  184 (354)
Q Consensus       113 ~~~~~~~~~~~~~~-~~~~~~viiiDE~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~--~~l~~~l~sR--~~~i  184 (354)
                      ..+.+....--.+. .....+++||||+..|   .+..++++.++|+.   +.++|.+....  ..+.+.+++|  +.++
T Consensus        77 ~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s---~~~vi~vv~~~~~~~~l~~i~~~~~~~i~  153 (168)
T PF03266_consen   77 DLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDS---NKPVIGVVHKRSDNPFLEEIKRRPDVKIF  153 (168)
T ss_dssp             -HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCT---TSEEEEE--SS--SCCHHHHHTTTTSEEE
T ss_pred             cHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcC---CCcEEEEEecCCCcHHHHHHHhCCCcEEE
Confidence            11222222110011 0135589999998666   57788889999882   34466655544  4689999998  7788


Q ss_pred             eecCCCHHHHH
Q 018543          185 RINSPTEEQIV  195 (354)
Q Consensus       185 ~~~~~~~~~~~  195 (354)
                      .+.+-+.+.+.
T Consensus       154 ~vt~~NRd~l~  164 (168)
T PF03266_consen  154 EVTEENRDALP  164 (168)
T ss_dssp             E--TTTCCCHH
T ss_pred             EeChhHHhhHh
Confidence            88776655443

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]

Probab=98.91  E-value=5.7e-08  Score=83.67  Aligned_cols=176  Identities=17%  Similarity=0.223  Sum_probs=102.2

Q ss_pred             cccCHHHHHHHHHHHh----cCCC--Ce-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543           15 VIVHQDIAQNLKKLVT----EQDC--PH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (354)
Q Consensus        15 ~~g~~~~~~~l~~~l~----~~~~--~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
                      +.||.-+++.+-..++    +..+  |- +=|+|++||||...++.+|+.++..+...-.+.-..               
T Consensus        84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fv---------------  148 (344)
T KOG2170|consen   84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFV---------------  148 (344)
T ss_pred             hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhh---------------
Confidence            5677555554444443    3322  22 669999999999999999998865443211110000               


Q ss_pred             ccccCceeeeCCCCCCCcc--hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-------
Q 018543           88 TLSSANHVELSPSDAGFQD--RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------  158 (354)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-------  158 (354)
                             -..........+  +..++..+....+        ..+..++|+||+|.|++...+.|...++-++       
T Consensus       149 -------at~hFP~~~~ie~Yk~eL~~~v~~~v~--------~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~f  213 (344)
T KOG2170|consen  149 -------ATLHFPHASKIEDYKEELKNRVRGTVQ--------ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDF  213 (344)
T ss_pred             -------hhccCCChHHHHHHHHHHHHHHHHHHH--------hcCCceEEechhhhcCHhHHHHHhhhhccccccccccc
Confidence                   000000111000  0112222222121        1345799999999999999999999987543       


Q ss_pred             CceeEEEEecCCCcccHH-----------------------Hh-------------hhc-------ceeeecCCCHHHHH
Q 018543          159 ASCRLILCCNSSSKVTEA-----------------------IR-------------SRC-------LNIRINSPTEEQIV  195 (354)
Q Consensus       159 ~~~~~Il~~~~~~~l~~~-----------------------l~-------------sR~-------~~i~~~~~~~~~~~  195 (354)
                      .+.+||+.+|.-...+..                       +.             ||.       ..|.|-|++...+.
T Consensus       214 rkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~  293 (344)
T KOG2170|consen  214 RKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVR  293 (344)
T ss_pred             cceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHH
Confidence            457899999865432221                       10             111       24667777777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHH
Q 018543          196 KVLEFIAKKEGLQLPSGFATRLAEK  220 (354)
Q Consensus       196 ~~L~~~~~~~~~~i~~~~l~~i~~~  220 (354)
                      .-++..+.++|...+.+.++.+++.
T Consensus       294 ~C~r~el~~rg~~~d~~~~erva~~  318 (344)
T KOG2170|consen  294 SCIRAELRKRGLAPDQDFVERVANS  318 (344)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHh
Confidence            7777777777776666666666554

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.90  E-value=3.5e-09  Score=90.74  Aligned_cols=54  Identities=11%  Similarity=0.271  Sum_probs=39.6

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|+++++.+.+ . +.+|+.++
T Consensus       157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~-~-~~d~v~~l  213 (218)
T cd03255         157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-E-YADRIIEL  213 (218)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH-h-hhcEEEEe
Confidence            57899999998 78999999999999977643  46677777776543 3 55554443

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.90  E-value=4.8e-09  Score=89.22  Aligned_cols=134  Identities=17%  Similarity=0.291  Sum_probs=75.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcc----------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD----------  106 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------  106 (354)
                      +.+.||+|+||||+++.+++ +..+..+.+.+++....  ... .         ....+.+.+++.....          
T Consensus        29 ~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~--~~~-~---------~~~~i~~~~q~~~~~~~~tv~e~l~~   95 (208)
T cd03268          29 YGFLGPNGAGKTTTMKIILG-LIKPDSGEITFDGKSYQ--KNI-E---------ALRRIGALIEAPGFYPNLTARENLRL   95 (208)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCCccc--chH-H---------HHhhEEEecCCCccCccCcHHHHHHH
Confidence            99999999999999999998 55677777777765432  000 0         0001122222211111          


Q ss_pred             --------hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-
Q 018543          107 --------RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-  159 (354)
Q Consensus       107 --------~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-  159 (354)
                              ...+.+.++.+.     ...+..+|+            ..+++++++||+ ..|+......+.+.+.+... 
T Consensus        96 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  175 (208)
T cd03268          96 LARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ  175 (208)
T ss_pred             HHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHC
Confidence                    111222222210     000111121            247899999998 78999999999999876543 


Q ss_pred             ceeEEEEecCCCcccHHHhhhccee
Q 018543          160 SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       160 ~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +..+|+++++. .....+.+|+..+
T Consensus       176 ~~tii~~tH~~-~~~~~~~d~v~~l  199 (208)
T cd03268         176 GITVLISSHLL-SEIQKVADRIGII  199 (208)
T ss_pred             CCEEEEEcCCH-HHHHHhcCEEEEE
Confidence            34455555544 3445555555443

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.90  E-value=7e-09  Score=84.55  Aligned_cols=130  Identities=18%  Similarity=0.265  Sum_probs=74.1

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY  108 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  108 (354)
                      +..|..  +.|.||+|+||||+.+.+++ +..+..+.+.+++....  .....     ..  ....+.+.++   .....
T Consensus        23 i~~Ge~--~~l~G~nGsGKSTLl~~i~G-~~~~~~G~v~~~g~~~~--~~~~~-----~~--~~~~i~~~~q---LS~G~   87 (163)
T cd03216          23 VRRGEV--HALLGENGAGKSTLMKILSG-LYKPDSGEILVDGKEVS--FASPR-----DA--RRAGIAMVYQ---LSVGE   87 (163)
T ss_pred             EeCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEECC--cCCHH-----HH--HhcCeEEEEe---cCHHH
Confidence            344443  99999999999999999998 55677777777665332  00000     00  0111222222   11111


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543          109 VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      . +. +. ++...      ..+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ..+.+.+|+..
T Consensus        88 ~-qr-l~-laral------~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~  154 (163)
T cd03216          88 R-QM-VE-IARAL------ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTV  154 (163)
T ss_pred             H-HH-HH-HHHHH------hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            1 11 11 11111      235689999998 78999999999999976643 445566655543 33444555433

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=98.90  E-value=1.3e-07  Score=90.47  Aligned_cols=109  Identities=17%  Similarity=0.178  Sum_probs=77.6

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCC
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSP  189 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~  189 (354)
                      ...+++|||++.|+...|..|++.+++..           .++++|++++...       .+.+.+..|+.  .|.+||+
T Consensus       237 ~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppL  316 (457)
T PRK11361        237 NEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPL  316 (457)
T ss_pred             CCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCCh
Confidence            34689999999999999999999997531           2367888877542       35556666654  4666676


Q ss_pred             C--HHHHHHHHHH----HHHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 018543          190 T--EEQIVKVLEF----IAKKEG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ  238 (354)
Q Consensus       190 ~--~~~~~~~L~~----~~~~~~---~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~  238 (354)
                      .  .+++..+...    ...+.+   ..+++++++.+..+. .||+|+..+.++.++..
T Consensus       317 reR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~  375 (457)
T PRK11361        317 RDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM  375 (457)
T ss_pred             hhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence            5  3444443333    333223   368899999998865 89999999999987754

>PRK04132 replication factor C small subunit; Provisional

Probab=98.90  E-value=6.8e-10  Score=110.32  Aligned_cols=49  Identities=47%  Similarity=0.899  Sum_probs=46.9

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHH
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTL   50 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtl   50 (354)
                      +|++||||++|+|++||+++++.|+.+++.+++||++|+||||+||+..
T Consensus         8 ~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~   56 (846)
T PRK04132          8 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT   56 (846)
T ss_pred             cHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence            7999999999999999999999999999999999999999999999643

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.90  E-value=4.5e-09  Score=89.93  Aligned_cols=54  Identities=19%  Similarity=0.343  Sum_probs=38.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|+......+.+.+.+.. .+..+|++|++.+ ....+.+|+.+
T Consensus       155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~  210 (216)
T TIGR00960       155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLT  210 (216)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            57899999998 7899999999999887653 3455666666654 33445555433

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.89  E-value=5.8e-09  Score=89.53  Aligned_cols=147  Identities=18%  Similarity=0.234  Sum_probs=81.5

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (354)
                      .+.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++....  ....    ..     ...+.+.+++
T Consensus        18 l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~--~~~~----~~-----~~~i~~v~q~   83 (220)
T cd03263          18 VDDLSLNVYKGEI--FGLLGHNGAGKTTTLKMLTG-ELRPTSGTAYINGYSIR--TDRK----AA-----RQSLGYCPQF   83 (220)
T ss_pred             ecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecc--cchH----HH-----hhhEEEecCc
Confidence            3334334445544  99999999999999999998 56777787777765432  0000    00     0011121111


Q ss_pred             CCCcch----------------------hHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-Cc
Q 018543          102 AGFQDR----------------------YVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DK  141 (354)
Q Consensus       102 ~~~~~~----------------------~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~  141 (354)
                      ......                      ..+.++++.+.-     .....+++            ..+++++++||+ ..
T Consensus        84 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~  163 (220)
T cd03263          84 DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG  163 (220)
T ss_pred             CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence            111100                      011222221110     00111111            257899999997 78


Q ss_pred             CCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543          142 LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       142 l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      |++.....+.+.+.+......+|+++++++ ....+.+|+.+
T Consensus       164 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~~  204 (220)
T cd03263         164 LDPASRRAIWDLILEVRKGRSIILTTHSMD-EAEALCDRIAI  204 (220)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhcCEEEE
Confidence            999999999999987655555666666554 33445566543

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.89  E-value=1.2e-08  Score=84.04  Aligned_cols=129  Identities=23%  Similarity=0.351  Sum_probs=74.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHH--
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI--  114 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~--  114 (354)
                      +.|.||+|+||||+++.+++ +..+..+.+.+++....  ...        .......+.+.+++...... ++.+.+  
T Consensus        31 ~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~--~~~--------~~~~~~~i~~~~q~~~~~~~-tv~~~lLS   98 (173)
T cd03246          31 LAIIGPSGSGKSTLARLILG-LLRPTSGRVRLDGADIS--QWD--------PNELGDHVGYLPQDDELFSG-SIAENILS   98 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHh-ccCCCCCeEEECCEEcc--cCC--------HHHHHhheEEECCCCccccC-cHHHHCcC
Confidence            89999999999999999998 55677777777765432  000        00001123333333322211 222211  


Q ss_pred             ----HHHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543          115 ----KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       115 ----~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                          +.++-...    ...+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+.+ . ..+|+.+
T Consensus        99 ~G~~qrv~la~a----l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~-~~d~v~~  167 (173)
T cd03246          99 GGQRQRLGLARA----LYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-A-SADRILV  167 (173)
T ss_pred             HHHHHHHHHHHH----HhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-H-hCCEEEE
Confidence                00000000    1246689999998 78999999999999876543 45677777766432 2 3444433

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=98.89  E-value=1.9e-08  Score=84.82  Aligned_cols=198  Identities=21%  Similarity=0.204  Sum_probs=115.6

Q ss_pred             CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeee
Q 018543           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL   97 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   97 (354)
                      +.+++..+...+..|+. -+.++|+-|+|||.+.|++...+.....-.+.++...+.           -..+...-..++
T Consensus        36 h~e~l~~l~~~i~d~qg-~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s-----------~~~~~~ai~~~l  103 (269)
T COG3267          36 HNEALLMLHAAIADGQG-ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLS-----------DATLLEAIVADL  103 (269)
T ss_pred             hhHHHHHHHHHHhcCCc-eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchh-----------HHHHHHHHHHHh
Confidence            46667777777776652 288999999999999997766443222111122211111           000000000000


Q ss_pred             CCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHh---hccCceeEEEEecCCC---
Q 018543           98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME---KYSASCRLILCCNSSS---  171 (354)
Q Consensus        98 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le---~~~~~~~~Il~~~~~~---  171 (354)
                      .. +....-...++..-..+.....    ..+.+-++++||++.+..++..+|+...+   +.+..-.++++....-   
T Consensus       104 ~~-~p~~~~~~~~e~~~~~L~al~~----~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~  178 (269)
T COG3267         104 ES-QPKVNVNAVLEQIDRELAALVK----KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPR  178 (269)
T ss_pred             cc-CccchhHHHHHHHHHHHHHHHH----hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchh
Confidence            00 1111111111111111111111    12334799999999999998888877764   3333344555543221   


Q ss_pred             ---cccHHHhhhcce-eeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543          172 ---KVTEAIRSRCLN-IRINSPTEEQIVKVLEFIAKKEGLQ---LPSGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       172 ---~l~~~l~sR~~~-i~~~~~~~~~~~~~L~~~~~~~~~~---i~~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                         .....+..||.+ |..+|++.++...+|++.++..+..   ++++++..+...+.| .-+++|.+-
T Consensus       179 lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~  246 (269)
T COG3267         179 LRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLA  246 (269)
T ss_pred             hchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHH
Confidence               133456778988 9999999999999999998876543   568999999999999 556666543

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.89  E-value=6.5e-09  Score=87.18  Aligned_cols=129  Identities=16%  Similarity=0.152  Sum_probs=76.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc-CCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK  115 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~  115 (354)
                      +.|.||+|+||||+++.++.... .+..+.+.+++....              ......+.+.+++.......++.+.+.
T Consensus        36 ~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~--------------~~~~~~i~~~~q~~~~~~~~tv~~~l~  101 (192)
T cd03232          36 TALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD--------------KNFQRSTGYVEQQDVHSPNLTVREALR  101 (192)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH--------------HHhhhceEEecccCccccCCcHHHHHH
Confidence            89999999999999999997432 356666666654321              000112333333333333233444443


Q ss_pred             HHHhcCCCCCC------------CCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhc
Q 018543          116 EMAKNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC  181 (354)
Q Consensus       116 ~~~~~~~~~~~------------~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~  181 (354)
                      ......  .++            ...+++++++||+ ..++......+.+.+.+... +..+|+++++.+.....+.+|+
T Consensus       102 ~~~~~~--~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i  179 (192)
T cd03232         102 FSALLR--GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRL  179 (192)
T ss_pred             HHHHHh--cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEE
Confidence            211111  111            1246799999997 78999999999999876543 4567777777553233344544

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06921 hypothetical protein; Provisional

Probab=98.88  E-value=1.3e-08  Score=89.38  Aligned_cols=27  Identities=30%  Similarity=0.528  Sum_probs=23.7

Q ss_pred             CCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           34 CPHLLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        34 ~~~~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      ..+++|+||+|+|||+++.++++++..
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~  143 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMR  143 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence            345999999999999999999998743

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.88  E-value=6.8e-09  Score=89.87  Aligned_cols=149  Identities=15%  Similarity=0.251  Sum_probs=81.2

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  102 (354)
                      +.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++............         ...+.+.+++.
T Consensus        17 ~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~---------~~~i~~~~q~~   84 (232)
T cd03218          17 NGVSLSVKQGEI--VGLLGPNGAGKTTTFYMIVG-LVKPDSGKILLDGQDITKLPMHKRA---------RLGIGYLPQEA   84 (232)
T ss_pred             ccceeEecCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccCCHhHHH---------hccEEEecCCc
Confidence            333334445544  99999999999999999998 5567778777776543200000000         00111111111


Q ss_pred             CCcch----------------------hHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcC
Q 018543          103 GFQDR----------------------YVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKL  142 (354)
Q Consensus       103 ~~~~~----------------------~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l  142 (354)
                      .....                      ..+.++++.+.-     ..+..+++            ..+++++++||+ ..|
T Consensus        85 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L  164 (232)
T cd03218          85 SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGV  164 (232)
T ss_pred             cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccC
Confidence            11000                      012222222110     00111121            157899999997 889


Q ss_pred             CHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          143 SREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       143 ~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +......+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus       165 D~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l  206 (232)
T cd03218         165 DPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYII  206 (232)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            99999999998876543 455666666654 345555665433

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.88  E-value=1.6e-09  Score=97.33  Aligned_cols=154  Identities=14%  Similarity=0.259  Sum_probs=90.8

Q ss_pred             ccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (354)
Q Consensus        16 ~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   95 (354)
                      +|...+++.+.-.++.|.+  +-|.||+||||||+.|++|+ +..++.+.+.+++..+.-..|.++            .+
T Consensus        15 yg~~~av~~isl~i~~Gef--~~lLGPSGcGKTTlLR~IAG-fe~p~~G~I~l~G~~i~~lpp~kR------------~i   79 (352)
T COG3842          15 FGDFTAVDDISLDIKKGEF--VTLLGPSGCGKTTLLRMIAG-FEQPSSGEILLDGEDITDVPPEKR------------PI   79 (352)
T ss_pred             cCCeeEEecceeeecCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChhhc------------cc
Confidence            3444445556666666765  88999999999999999998 888999999999987762222222            22


Q ss_pred             eeCCCCCCCcchhH-----------------------HHHHHHHH-----HhcCCCCCCC------------CCCceEEE
Q 018543           96 ELSPSDAGFQDRYV-----------------------VQEVIKEM-----AKNRPIDTKG------------KRGFKVLV  135 (354)
Q Consensus        96 ~~~~~~~~~~~~~~-----------------------i~~~~~~~-----~~~~~~~~~~------------~~~~~vii  135 (354)
                      .+..+++...+..+                       +.+.++.+     +...+..+|+            ..++++++
T Consensus        80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL  159 (352)
T COG3842          80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL  159 (352)
T ss_pred             ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence            23333322222222                       22222211     1112222222            14789999


Q ss_pred             EeCC-CcCCHHHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhhcceee
Q 018543          136 LNEV-DKLSREAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRCLNIR  185 (354)
Q Consensus       136 iDE~-d~l~~~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR~~~i~  185 (354)
                      +||+ ..|+......+...+.+.  ..+..+|++|++.+.- -++.+|+.+..
T Consensus       160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEA-l~msDrI~Vm~  211 (352)
T COG3842         160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEA-LAMSDRIAVMN  211 (352)
T ss_pred             hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH-hhhccceEEcc
Confidence            9997 778766555554444332  1357788888886532 24556654433

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.88  E-value=8.3e-09  Score=87.94  Aligned_cols=55  Identities=15%  Similarity=0.212  Sum_probs=39.7

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++..+..+.+.+++......+|+++++.+ ....+.+|+.++
T Consensus       147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~-~~~~~~d~i~~l  202 (211)
T cd03264         147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVE-DVESLCNQVAVL  202 (211)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEE
Confidence            57899999998 78999999999999987655555566555543 344555665443

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.88  E-value=4.6e-09  Score=88.66  Aligned_cols=144  Identities=10%  Similarity=0.072  Sum_probs=83.0

Q ss_pred             HHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh-cCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543           24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (354)
Q Consensus        24 ~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  102 (354)
                      .+.-.+..|.  .+.|.||+|+||||+++.+++.. ..+..+.+.+++.......+.        .. ....+.+.+++.
T Consensus        18 ~is~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~--------~~-~~~~i~~v~q~~   86 (200)
T cd03217          18 GVNLTIKKGE--VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE--------ER-ARLGIFLAFQYP   86 (200)
T ss_pred             ccceEECCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH--------HH-hhCcEEEeecCh
Confidence            3333344444  39999999999999999999854 356777777777543300000        00 011133333333


Q ss_pred             CCcchhHHHHHHHHHHhcCCCCCC------------CCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEec
Q 018543          103 GFQDRYVVQEVIKEMAKNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCN  168 (354)
Q Consensus       103 ~~~~~~~i~~~~~~~~~~~~~~~~------------~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~  168 (354)
                      .......+.+.++...    ..++            ...+++++++||+ ..|+......+.+.+.+... ...+|++++
T Consensus        87 ~~~~~~~~~~~l~~~~----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh  162 (200)
T cd03217          87 PEIPGVKNADFLRYVN----EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH  162 (200)
T ss_pred             hhccCccHHHHHhhcc----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence            2222223444332211    0111            1246799999998 78999999999888876543 455666666


Q ss_pred             CCCcccHH-Hhhhcce
Q 018543          169 SSSKVTEA-IRSRCLN  183 (354)
Q Consensus       169 ~~~~l~~~-l~sR~~~  183 (354)
                      +.+ .... +.+|+.+
T Consensus       163 ~~~-~~~~~~~d~i~~  177 (200)
T cd03217         163 YQR-LLDYIKPDRVHV  177 (200)
T ss_pred             CHH-HHHHhhCCEEEE
Confidence            654 4444 4666543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.88  E-value=6e-09  Score=93.81  Aligned_cols=148  Identities=18%  Similarity=0.299  Sum_probs=82.0

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (354)
                      .+.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++....  .....         ....+.+.+++
T Consensus        20 l~~vsl~i~~Ge~--~~l~G~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~---------~~~~i~~v~q~   85 (303)
T TIGR01288        20 VNDLSFTIARGEC--FGLLGPNGAGKSTIARMLLG-MISPDRGKITVLGEPVP--SRARL---------ARVAIGVVPQF   85 (303)
T ss_pred             EcceeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECc--ccHHH---------HhhcEEEEecc
Confidence            3444444555544  99999999999999999998 56777787777765432  00000         00112222221


Q ss_pred             CCCcchhH----------------------HHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-Cc
Q 018543          102 AGFQDRYV----------------------VQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DK  141 (354)
Q Consensus       102 ~~~~~~~~----------------------i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~  141 (354)
                      .......+                      +.++++.+.     ......+|+            ..+++++++||+ ..
T Consensus        86 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g  165 (303)
T TIGR01288        86 DNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTG  165 (303)
T ss_pred             ccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence            11111011                      111221110     000001111            157899999998 88


Q ss_pred             CCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          142 LSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       142 l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      |++.....+.+.+.+... +..+|+++++. .....+.+|+.++
T Consensus       166 LD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l  208 (303)
T TIGR01288       166 LDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVL  208 (303)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEE
Confidence            999999999999977643 34455555544 4555666776443

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.88  E-value=6.9e-09  Score=88.65  Aligned_cols=54  Identities=11%  Similarity=0.244  Sum_probs=38.0

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++.....+.+.+.+... +..+|++|++.+ ....+.+|+.+
T Consensus       154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~  209 (214)
T TIGR02673       154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVII  209 (214)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence            47899999998 78999999999999977533 455666666543 33444455443

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.87  E-value=2.2e-08  Score=90.22  Aligned_cols=136  Identities=20%  Similarity=0.301  Sum_probs=75.6

Q ss_pred             HHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee-e
Q 018543           21 IAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE-L   97 (354)
Q Consensus        21 ~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~   97 (354)
                      +....+.+++.  ....+++|+||+|+|||+++.++|+++...+...+.+....+.                     . +
T Consensus       168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~---------------------~~l  226 (329)
T PRK06835        168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELI---------------------EIL  226 (329)
T ss_pred             HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHH---------------------HHH
Confidence            34444445552  1224599999999999999999999886443221111110000                     0 0


Q ss_pred             CCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC--cCCHHHHHHHHHHHhhc-cCceeEEEEecCCC---
Q 018543           98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVD--KLSREAQHSLRRTMEKY-SASCRLILCCNSSS---  171 (354)
Q Consensus        98 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d--~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~---  171 (354)
                      ........  ......+   ..        -.+..++||||+.  ..++..+..|+.+++.. ..+..+|++||...   
T Consensus       227 ~~~~~~~~--~~~~~~~---~~--------l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el  293 (329)
T PRK06835        227 REIRFNND--KELEEVY---DL--------LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL  293 (329)
T ss_pred             HHHHhccc--hhHHHHH---HH--------hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence            00000000  0000001   11        1244899999984  45677788899999664 33567888888754   


Q ss_pred             --cccHHHhhhc----ceeeecCCC
Q 018543          172 --KVTEAIRSRC----LNIRINSPT  190 (354)
Q Consensus       172 --~l~~~l~sR~----~~i~~~~~~  190 (354)
                        .+.+.+.||.    .++.|...+
T Consensus       294 ~~~~~eri~SRL~~~~~~i~~~G~d  318 (329)
T PRK06835        294 LKTYSERISSRLLGNFTLLKFYGED  318 (329)
T ss_pred             HHHHhHHHHHHHHcCCEEEEecCcC
Confidence              2345677774    457775544

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1e-07  Score=82.72  Aligned_cols=90  Identities=27%  Similarity=0.460  Sum_probs=57.5

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK  115 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~  115 (354)
                      ++|+.||.|+|||.+|+.+|+.+.-|-           ..        .+..+        +.  +.|+.. ..+..++.
T Consensus        99 NILLiGPTGsGKTlLAqTLAk~LnVPF-----------ai--------ADATt--------LT--EAGYVG-EDVENill  148 (408)
T COG1219          99 NILLIGPTGSGKTLLAQTLAKILNVPF-----------AI--------ADATT--------LT--EAGYVG-EDVENILL  148 (408)
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhCCCe-----------ee--------ccccc--------hh--hccccc-hhHHHHHH
Confidence            599999999999999999999773321           00        00001        11  122221 33555665


Q ss_pred             HHHhcCCCCCCCCCCceEEEEeCCCcCC--------------HHHHHHHHHHHhh
Q 018543          116 EMAKNRPIDTKGKRGFKVLVLNEVDKLS--------------REAQHSLRRTMEK  156 (354)
Q Consensus       116 ~~~~~~~~~~~~~~~~~viiiDE~d~l~--------------~~~~~~Ll~~le~  156 (354)
                      .+.+....+. ...++.||+|||+|.+.              ...|++|++++|.
T Consensus       149 kLlqaadydV-~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG  202 (408)
T COG1219         149 KLLQAADYDV-ERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG  202 (408)
T ss_pred             HHHHHcccCH-HHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence            5555444322 23466899999999883              3479999999985

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.87  E-value=6.7e-09  Score=89.01  Aligned_cols=146  Identities=19%  Similarity=0.240  Sum_probs=80.5

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  102 (354)
                      +.+.-.+..|..  +.|.||+|+||||+++.+++ +..+..+.+.+++....  ....    .+     ...+.+.+++.
T Consensus        22 ~~~sl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~--~~~~----~~-----~~~i~~~~q~~   87 (218)
T cd03266          22 DGVSFTVKPGEV--TGLLGPNGAGKTTTLRMLAG-LLEPDAGFATVDGFDVV--KEPA----EA-----RRRLGFVSDST   87 (218)
T ss_pred             cceEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CcCCCCceEEECCEEcc--cCHH----HH-----HhhEEEecCCc
Confidence            333333444443  99999999999999999998 56677777777765432  0000    00     01122222221


Q ss_pred             CCcchh----------------------HHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcC
Q 018543          103 GFQDRY----------------------VVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKL  142 (354)
Q Consensus       103 ~~~~~~----------------------~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l  142 (354)
                      ......                      .+.+.++.+.-     .....+++            ..+++++++||+ ..|
T Consensus        88 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~L  167 (218)
T cd03266          88 GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL  167 (218)
T ss_pred             ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCC
Confidence            111100                      11222222100     00001111            157899999998 789


Q ss_pred             CHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543          143 SREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       143 ~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      ++.....+.+.+.+... +..+|+++++.+ ....+.+|+..
T Consensus       168 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~  208 (218)
T cd03266         168 DVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVV  208 (218)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEE
Confidence            99999999999977643 456666666654 33445555433

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.87  E-value=5.7e-09  Score=88.95  Aligned_cols=54  Identities=17%  Similarity=0.248  Sum_probs=38.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.+
T Consensus       151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~  206 (211)
T cd03225         151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIV  206 (211)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            57899999998 88999999999999976543 455666666643 33444455433

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.86  E-value=3.1e-09  Score=87.59  Aligned_cols=101  Identities=24%  Similarity=0.363  Sum_probs=55.3

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI  114 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~  114 (354)
                      .+++|+||+|+|||++|.++++++...+.....+....+.            .        .+.... ..   ....+.+
T Consensus        48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~------------~--------~l~~~~-~~---~~~~~~~  103 (178)
T PF01695_consen   48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL------------D--------ELKQSR-SD---GSYEELL  103 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH------------H--------HHHCCH-CC---TTHCHHH
T ss_pred             eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee------------c--------cccccc-cc---cchhhhc
Confidence            4599999999999999999999875433211111110000            0        000000 00   0122233


Q ss_pred             HHHHhcCCCCCCCCCCceEEEEeCCCc--CCHHHHHHHHHHHhhccCceeEEEEecCC
Q 018543          115 KEMAKNRPIDTKGKRGFKVLVLNEVDK--LSREAQHSLRRTMEKYSASCRLILCCNSS  170 (354)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~viiiDE~d~--l~~~~~~~Ll~~le~~~~~~~~Il~~~~~  170 (354)
                      +.+.           +..++||||+..  .+....+.|.++++..-.+..+|++||..
T Consensus       104 ~~l~-----------~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~  150 (178)
T PF01695_consen  104 KRLK-----------RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS  150 (178)
T ss_dssp             HHHH-----------TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred             Cccc-----------cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence            3332           237899999854  45667778888886543345788888865

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.86  E-value=3.5e-09  Score=93.68  Aligned_cols=55  Identities=9%  Similarity=0.167  Sum_probs=39.0

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|+++++.+ ....+.+|+.++
T Consensus       177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l  234 (269)
T cd03294         177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIM  234 (269)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence            57899999997 88999999999998876532  355666666544 345555665433

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.86  E-value=1.1e-08  Score=87.74  Aligned_cols=144  Identities=19%  Similarity=0.249  Sum_probs=79.2

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF  104 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  104 (354)
                      +.-.+..|..  +.|.||+|+||||+++++++ +..++.+.+.+++....  ....    .+     ...+.+.+++...
T Consensus        19 vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~--~~~~----~~-----~~~i~~~~q~~~~   84 (220)
T cd03265          19 VSFRVRRGEI--FGLLGPNGAGKTTTIKMLTT-LLKPTSGRATVAGHDVV--REPR----EV-----RRRIGIVFQDLSV   84 (220)
T ss_pred             eeEEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEecC--cChH----HH-----hhcEEEecCCccc
Confidence            3333444443  89999999999999999998 55677777777665332  0000    00     0011111111111


Q ss_pred             cc----------------------hhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCH
Q 018543          105 QD----------------------RYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (354)
Q Consensus       105 ~~----------------------~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~  144 (354)
                      ..                      ...+.++++.+.-     ..+..+|+            ..+++++++||+ ..|++
T Consensus        85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~  164 (220)
T cd03265          85 DDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDP  164 (220)
T ss_pred             cccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCH
Confidence            10                      0112222222210     11111221            157899999997 88999


Q ss_pred             HHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       145 ~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .....+.+.+.+...  +..+|+++++.+ ....+.+|+.+
T Consensus       165 ~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~  204 (220)
T cd03265         165 QTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAI  204 (220)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            999999998876533  345666666544 34455566533

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.86  E-value=3.9e-09  Score=89.10  Aligned_cols=144  Identities=22%  Similarity=0.314  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc--------ccccccc
Q 018543           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID--------LELTTLS   90 (354)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~   90 (354)
                      ..+.+.+.-.+..|.+  +-+.||+||||||+.+.+|+ +..+..+.+.+++....  .|.....        +.|.++.
T Consensus        16 ~~vl~~i~L~v~~GEf--vsilGpSGcGKSTLLriiAG-L~~p~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~   90 (248)
T COG1116          16 VEVLEDINLSVEKGEF--VAILGPSGCGKSTLLRLIAG-LEKPTSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL   90 (248)
T ss_pred             eEEeccceeEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence            3444555555666766  88999999999999999998 77888888888887553  3322211        1111111


Q ss_pred             cCceeeeCCCCCCCcc---hhHHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCH----H
Q 018543           91 SANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR----E  145 (354)
Q Consensus        91 ~~~~i~~~~~~~~~~~---~~~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~----~  145 (354)
                      .  ++.+.....+...   ...+.+.++.+     ....|..+|+            ..+++++++||+ ..|+.    .
T Consensus        91 ~--NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~  168 (248)
T COG1116          91 D--NVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREE  168 (248)
T ss_pred             h--hheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHH
Confidence            1  1122111111111   11344444332     2223333332            157899999996 55553    3


Q ss_pred             HHHHHHHHHhhccCceeEEEEecCCC
Q 018543          146 AQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       146 ~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .|+.|+++.++.  +..++++|++.+
T Consensus       169 lq~~l~~lw~~~--~~TvllVTHdi~  192 (248)
T COG1116         169 LQDELLRLWEET--RKTVLLVTHDVD  192 (248)
T ss_pred             HHHHHHHHHHhh--CCEEEEEeCCHH
Confidence            466677776663  367888888865

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.86  E-value=4.8e-09  Score=96.28  Aligned_cols=138  Identities=20%  Similarity=0.309  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCC
Q 018543           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (354)
Q Consensus        20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (354)
                      .+++.+.-.+..|..  +-+.||+|+||||++|.+.. .-.+..+.+.+|+.+..          .|+.-.-+.|+.|.|
T Consensus       350 pil~~isF~l~~G~~--lgIIGPSgSGKSTLaR~lvG-~w~p~~G~VRLDga~l~----------qWd~e~lG~hiGYLP  416 (580)
T COG4618         350 PILKGISFALQAGEA--LGIIGPSGSGKSTLARLLVG-IWPPTSGSVRLDGADLR----------QWDREQLGRHIGYLP  416 (580)
T ss_pred             cceecceeEecCCce--EEEECCCCccHHHHHHHHHc-ccccCCCcEEecchhhh----------cCCHHHhccccCcCc
Confidence            344555555555654  88999999999999999987 66788888999987766          555556678899999


Q ss_pred             CCCCCcchhHHHHHHHHHHhcCCC--------------------------------CCCC------------CCCceEEE
Q 018543          100 SDAGFQDRYVVQEVIKEMAKNRPI--------------------------------DTKG------------KRGFKVLV  135 (354)
Q Consensus       100 ~~~~~~~~~~i~~~~~~~~~~~~~--------------------------------~~~~------------~~~~~vii  135 (354)
                      ++....+.. +.+.+..+......                                .+++            -+++++||
T Consensus       417 QdVeLF~GT-IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV  495 (580)
T COG4618         417 QDVELFDGT-IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV  495 (580)
T ss_pred             ccceecCCc-HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE
Confidence            887765532 33333333211110                                1111            16889999


Q ss_pred             EeCC-CcCCHHHHHHHHHHHhhc-cCceeEEEEecCCC
Q 018543          136 LNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCNSSS  171 (354)
Q Consensus       136 iDE~-d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~  171 (354)
                      +||+ .+|+.+...+|...+... ...+.+|++++.++
T Consensus       496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs  533 (580)
T COG4618         496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS  533 (580)
T ss_pred             ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence            9999 578888888888888543 45677888888765

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.85  E-value=5.9e-09  Score=90.32  Aligned_cols=150  Identities=19%  Similarity=0.260  Sum_probs=81.1

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  102 (354)
                      +.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++.......+..     .  ......+.+.+++.
T Consensus        22 ~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~-----~--~~~~~~i~~~~q~~   91 (233)
T cd03258          22 KDVSLSVPKGEI--FGIIGRSGAGKSTLIRCING-LERPTSGSVLVDGTDLTLLSGKE-----L--RKARRRIGMIFQHF   91 (233)
T ss_pred             ecceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcccCCHHH-----H--HHHHhheEEEccCc
Confidence            333333444544  99999999999999999998 56777788877776433100000     0  00000112222221


Q ss_pred             CCcchh----------------------HHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcC
Q 018543          103 GFQDRY----------------------VVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKL  142 (354)
Q Consensus       103 ~~~~~~----------------------~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l  142 (354)
                      ......                      .+.+.++.+.     ...+..+++            ..+++++++||+ ..|
T Consensus        92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~L  171 (233)
T cd03258          92 NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSAL  171 (233)
T ss_pred             ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcC
Confidence            111100                      1112222111     001111121            157899999998 789


Q ss_pred             CHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       143 ~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      ++.....+.+.+.+...  +..+|+++++.+ ....+.+|+.+
T Consensus       172 D~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~  213 (233)
T cd03258         172 DPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAV  213 (233)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            99999999999976532  455666666543 34555566543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.85  E-value=1.8e-08  Score=86.08  Aligned_cols=142  Identities=16%  Similarity=0.212  Sum_probs=77.4

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  102 (354)
                      +.+.-.+..|..  +.|.||+|+||||+++.+++ +..+..+.+.+++.....  ...           ...+.+.++..
T Consensus        28 ~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~i~~--~~~-----------~~~i~~~~q~~   91 (214)
T PRK13543         28 GPLDFHVDAGEA--LLVQGDNGAGKTTLLRVLAG-LLHVESGQIQIDGKTATR--GDR-----------SRFMAYLGHLP   91 (214)
T ss_pred             ecceEEECCCCE--EEEEcCCCCCHHHHHHHHhC-CCCCCCeeEEECCEEccc--hhh-----------hhceEEeecCc
Confidence            333334444443  99999999999999999998 567777877777654320  000           00111111111


Q ss_pred             CCc-------------------chhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHH
Q 018543          103 GFQ-------------------DRYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSRE  145 (354)
Q Consensus       103 ~~~-------------------~~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~  145 (354)
                      ...                   ....+++.++.+.-     .....+++            ..+++++++||+ ..|+..
T Consensus        92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~  171 (214)
T PRK13543         92 GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE  171 (214)
T ss_pred             ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence            100                   00112222222210     00001111            147899999997 889999


Q ss_pred             HHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhc
Q 018543          146 AQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC  181 (354)
Q Consensus       146 ~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~  181 (354)
                      ....+.+.+.+... +..+|+++++. ...+.+.+|.
T Consensus       172 ~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i  207 (214)
T PRK13543        172 GITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRM  207 (214)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceE
Confidence            99999998865433 34555555554 3334444554

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.84  E-value=1.4e-08  Score=87.16  Aligned_cols=150  Identities=18%  Similarity=0.256  Sum_probs=78.5

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------e
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN----------H   94 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~   94 (354)
                      +.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++....  ....    .+..+.+..          .
T Consensus        23 vs~~i~~G~~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~--~~~~----~i~~v~q~~~~~~~~tv~e~   93 (220)
T cd03293          23 ISLSVEEGEF--VALVGPSGCGKSTLLRIIAG-LERPTSGEVLVDGEPVT--GPGP----DRGYVFQQDALLPWLTVLDN   93 (220)
T ss_pred             eeEEEeCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECc--cccC----cEEEEecccccccCCCHHHH
Confidence            3333444544  99999999999999999998 55677777777665432  0000    011110000          0


Q ss_pred             eeeCCCCCCCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHH
Q 018543           95 VELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT  153 (354)
Q Consensus        95 i~~~~~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~  153 (354)
                      +.+.....+...   ...+.+.++.+.     ...+..+|+            ..+++++++||+ ..|++.....+.+.
T Consensus        94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~  173 (220)
T cd03293          94 VALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEE  173 (220)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHH
Confidence            000000000000   001222222211     111111221            147899999998 78999999999998


Q ss_pred             Hhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543          154 MEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       154 le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +.+..  .+..+|+++++.+ ....+.+|+.++
T Consensus       174 l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  205 (220)
T cd03293         174 LLDIWRETGKTVLLVTHDID-EAVFLADRVVVL  205 (220)
T ss_pred             HHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence            87652  2456666666654 234444554433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.84  E-value=9e-09  Score=87.89  Aligned_cols=55  Identities=13%  Similarity=0.243  Sum_probs=38.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++..+..+.+.+.+... +..+|+++++.+ ..+.+.+|+.++
T Consensus       152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l  208 (213)
T cd03262         152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFM  208 (213)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            57899999997 78999999999999976543 345666665543 334455554433

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.84  E-value=1.1e-08  Score=88.42  Aligned_cols=147  Identities=15%  Similarity=0.229  Sum_probs=81.0

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF  104 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  104 (354)
                      +.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++.......+....         ...+.+.+++...
T Consensus        19 vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~---------~~~i~~~~q~~~~   86 (230)
T TIGR03410        19 VSLEVPKGEV--TCVLGRNGVGKTTLLKTLMG-LLPVKSGSIRLDGEDITKLPPHERA---------RAGIAYVPQGREI   86 (230)
T ss_pred             eeeEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCCHHHHH---------HhCeEEeccCCcc
Confidence            3333444544  99999999999999999998 5677778777776543200000000         0011111111111


Q ss_pred             cc-------------------hhHHHHHHHHHH------hcCCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543          105 QD-------------------RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (354)
Q Consensus       105 ~~-------------------~~~i~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (354)
                      ..                   .....+.++.+.      ......+++            ..+++++++||+ ..|++..
T Consensus        87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~  166 (230)
T TIGR03410        87 FPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSI  166 (230)
T ss_pred             cCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence            00                   011122222221      111111221            147899999998 8899999


Q ss_pred             HHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       147 ~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ...+.+.+.+...  +..+|+++++.+ ..+.+.+|+.++
T Consensus       167 ~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l  205 (230)
T TIGR03410       167 IKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVM  205 (230)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEE
Confidence            9999999977543  455666666654 445556665443

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.83  E-value=9.4e-09  Score=87.76  Aligned_cols=146  Identities=18%  Similarity=0.303  Sum_probs=80.5

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  102 (354)
                      +.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..... .+..+           ..+.+.+++.
T Consensus        17 ~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~-~~~~~-----------~~i~~v~q~~   81 (213)
T cd03259          17 DDLSLTVEPGEF--LALLGPSGCGKTTLLRLIAG-LERPDSGEILIDGRDVTG-VPPER-----------RNIGMVFQDY   81 (213)
T ss_pred             cceeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcCc-Cchhh-----------ccEEEEcCch
Confidence            333334444544  99999999999999999998 557777877777654320 00000           0111111111


Q ss_pred             CCcc----------------------hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcC
Q 018543          103 GFQD----------------------RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKL  142 (354)
Q Consensus       103 ~~~~----------------------~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l  142 (354)
                      ....                      ...+.++++.+.     ...+..+|+            ..+++++++||+ ..|
T Consensus        82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~L  161 (213)
T cd03259          82 ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSAL  161 (213)
T ss_pred             hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            1000                      001222222211     011111221            257899999998 789


Q ss_pred             CHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       143 ~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ++.....+.+.+.+...  +..+|+++++.+ ....+.+|+..+
T Consensus       162 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l  204 (213)
T cd03259         162 DAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVM  204 (213)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEE
Confidence            99999999999976532  445666666543 334555655443

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.83  E-value=1.4e-08  Score=86.67  Aligned_cols=53  Identities=15%  Similarity=0.257  Sum_probs=37.6

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .+++++++||+ ..|++..+..+.+.+.+...  +..+|+++++.+ ....+.+|+.
T Consensus       147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~  202 (213)
T cd03301         147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIA  202 (213)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEE
Confidence            47899999997 88999999999998876532  456677666653 3344445543

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.83  E-value=1.3e-08  Score=94.32  Aligned_cols=154  Identities=18%  Similarity=0.200  Sum_probs=82.5

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc-ccccccccccCc----------
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELTTLSSAN----------   93 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------   93 (354)
                      +.-.++.|..  +.|.||+|+||||+++++++ +..+..+.+.+++....  ....+ ....+..+.+..          
T Consensus        22 vs~~i~~Gei--v~liGpNGaGKSTLLk~LaG-ll~p~sG~I~l~G~~i~--~~~~~~~~~~ig~v~q~~~l~~~~tv~e   96 (402)
T PRK09536         22 VDLSVREGSL--VGLVGPNGAGKTTLLRAING-TLTPTAGTVLVAGDDVE--ALSARAASRRVASVPQDTSLSFEFDVRQ   96 (402)
T ss_pred             eEEEECCCCE--EEEECCCCchHHHHHHHHhc-CCCCCCcEEEECCEEcC--cCCHHHHhcceEEEccCCCCCCCCCHHH
Confidence            3333444544  89999999999999999998 66788888888776443  10000 000011111100          


Q ss_pred             eeeeCCC----CCC---CcchhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHH
Q 018543           94 HVELSPS----DAG---FQDRYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (354)
Q Consensus        94 ~i~~~~~----~~~---~~~~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~  148 (354)
                      .+.+...    ..+   ..+...+++.++.+.-     .....+|+            ..+++++++||+ ..|+...+.
T Consensus        97 ~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~  176 (402)
T PRK09536         97 VVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQV  176 (402)
T ss_pred             HHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence            0000000    000   0011123333332211     11111221            157899999997 889999999


Q ss_pred             HHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543          149 SLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       149 ~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++.|.+.......|++++|.......+.+|+.+
T Consensus       177 ~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~  211 (402)
T PRK09536        177 RTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVL  211 (402)
T ss_pred             HHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence            99998877643333444455555555666777643

>PHA00729 NTP-binding motif containing protein

Probab=98.83  E-value=3.4e-08  Score=83.33  Aligned_cols=29  Identities=24%  Similarity=0.363  Sum_probs=26.1

Q ss_pred             cccHHHhhhcceeeecCCCHHHHHHHHHH
Q 018543          172 KVTEAIRSRCLNIRINSPTEEQIVKVLEF  200 (354)
Q Consensus       172 ~l~~~l~sR~~~i~~~~~~~~~~~~~L~~  200 (354)
                      .+.++++|||..+.|.+++++++...|+.
T Consensus       110 ~L~~aLrSR~~l~il~~ls~edL~~~Lr~  138 (226)
T PHA00729        110 KIYALIRTRVSAVIFTTPSPEDLAFYLRE  138 (226)
T ss_pred             HHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence            57788999999999999999999998875

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.83  E-value=1e-08  Score=88.92  Aligned_cols=55  Identities=15%  Similarity=0.118  Sum_probs=39.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|+++++.+ ....+.+|+.++
T Consensus       153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l  210 (235)
T cd03261         153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVL  210 (235)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEE
Confidence            47899999998 78999999999999876533  455666666654 334555665443

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.83  E-value=2.1e-08  Score=87.02  Aligned_cols=54  Identities=13%  Similarity=0.201  Sum_probs=40.1

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+..  .+..+|+++++.+.+ +. .+|+.++
T Consensus       149 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~-~~-~d~i~~l  205 (236)
T TIGR03864       149 HRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI-EA-DDRLVVL  205 (236)
T ss_pred             cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH-hh-CCEEEEE
Confidence            57899999997 7899999999999987654  245677777777655 33 5665443

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.82  E-value=1.4e-08  Score=87.36  Aligned_cols=152  Identities=14%  Similarity=0.224  Sum_probs=78.5

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------eeee
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN----------HVEL   97 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~   97 (354)
                      .+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++.......+.......+..+.+..          .+.+
T Consensus        22 ~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~   98 (222)
T cd03224          22 TVPEGEI--VALLGRNGAGKTTLLKTIMG-LLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLL   98 (222)
T ss_pred             EEcCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHH
Confidence            3344443  99999999999999999998 556777777777654320000000000011111100          0000


Q ss_pred             CCCCCC-CcchhHHHHHHHHHH------hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhc
Q 018543           98 SPSDAG-FQDRYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY  157 (354)
Q Consensus        98 ~~~~~~-~~~~~~i~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~  157 (354)
                      .....+ ......+.++++.+.      ...+..+++            ..+++++++||+ ..|++.....+.+.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  178 (222)
T cd03224          99 GAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL  178 (222)
T ss_pred             HhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence            000000 000112223333321      111111221            247899999997 789999999999999765


Q ss_pred             cC-ceeEEEEecCCCcccHHHhhhcce
Q 018543          158 SA-SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       158 ~~-~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .. +..+|+++++. .....+.+|+..
T Consensus       179 ~~~~~tiii~sH~~-~~~~~~~d~i~~  204 (222)
T cd03224         179 RDEGVTILLVEQNA-RFALEIADRAYV  204 (222)
T ss_pred             HHCCCEEEEEeCCH-HHHHHhccEEEE
Confidence            43 44555555554 334455555533

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.82  E-value=9.9e-09  Score=87.70  Aligned_cols=54  Identities=13%  Similarity=0.324  Sum_probs=37.4

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++..+..+.+.+.+.. ....+|+++++.+ ....+.+|+.+
T Consensus       153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~  208 (214)
T cd03292         153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIA  208 (214)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            47899999998 7899999999999997753 3455666666543 33334444433

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.82  E-value=1.1e-08  Score=87.87  Aligned_cols=55  Identities=15%  Similarity=0.262  Sum_probs=37.7

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+...+..+.+.+.+... +..+|+++++.+ ..+.+.+|+.++
T Consensus       154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  210 (222)
T PRK10908        154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTL  210 (222)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            47899999997 88999999999998876533 455666666543 334444554333

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.81  E-value=1.5e-08  Score=86.02  Aligned_cols=150  Identities=16%  Similarity=0.236  Sum_probs=80.1

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC-----------c
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA-----------N   93 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~   93 (354)
                      +.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++....  ....+.  .+..+.+.           +
T Consensus        19 v~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~~--~i~~~~q~~~~~~~~~tv~e   91 (205)
T cd03226          19 LSLDLYAGEI--IALTGKNGAGKTTLAKILAG-LIKESSGSILLNGKPIK--AKERRK--SIGYVMQDVDYQLFTDSVRE   91 (205)
T ss_pred             eeEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEhh--hHHhhc--ceEEEecChhhhhhhccHHH
Confidence            3333444544  99999999999999999998 56777787777765432  000000  01111000           0


Q ss_pred             eeeeCCCCCCCcchhHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHh
Q 018543           94 HVELSPSDAGFQDRYVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME  155 (354)
Q Consensus        94 ~i~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le  155 (354)
                      .+.+.....+ .....+.+.++.+.-.     .+..+|+            ..+++++++||+ ..|++.....+.+.+.
T Consensus        92 ~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  170 (205)
T cd03226          92 ELLLGLKELD-AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR  170 (205)
T ss_pred             HHhhhhhhcC-ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            0000000000 0111233333332111     1111221            147899999998 8899999999999997


Q ss_pred             hcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543          156 KYS-ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       156 ~~~-~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +.. .+..+|+++++.+ ....+.+|+.+
T Consensus       171 ~~~~~~~tii~~sH~~~-~~~~~~d~i~~  198 (205)
T cd03226         171 ELAAQGKAVIVITHDYE-FLAKVCDRVLL  198 (205)
T ss_pred             HHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            763 3455666666544 33445555433

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.79  E-value=1.5e-08  Score=87.96  Aligned_cols=54  Identities=19%  Similarity=0.245  Sum_probs=38.8

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++.....+.+.+.+.. .+..+|++|++.+ ....+.+|+.+
T Consensus       160 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~  215 (236)
T cd03219         160 TDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTV  215 (236)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence            47899999998 7899999999999997754 3455666666654 44455566543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.6e-08  Score=92.67  Aligned_cols=48  Identities=27%  Similarity=0.469  Sum_probs=40.8

Q ss_pred             CCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      .|.|++||+.+++.+.-....|.  |++++||||||||.+|..+.. ++.+
T Consensus       177 D~~DV~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~-lLPp  224 (490)
T COG0606         177 DFKDVKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPG-LLPP  224 (490)
T ss_pred             chhhhcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcc-cCCC
Confidence            78999999999999987776553  499999999999999999887 4443

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.79  E-value=6.2e-09  Score=102.60  Aligned_cols=140  Identities=19%  Similarity=0.295  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCC
Q 018543           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (354)
Q Consensus        20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (354)
                      .+.+.+.-.++.|+.  +.+.|++|+||||++|.+.+ ++.+..|.+.+|+.+..          .++...-.+.+.+.+
T Consensus       487 ~vL~~isL~I~~Ge~--vaIvG~SGsGKSTL~KLL~g-ly~p~~G~I~~dg~dl~----------~i~~~~lR~~ig~V~  553 (709)
T COG2274         487 PVLEDLSLEIPPGEK--VAIVGRSGSGKSTLLKLLLG-LYKPQQGRILLDGVDLN----------DIDLASLRRQVGYVL  553 (709)
T ss_pred             chhhceeEEeCCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEeHH----------hcCHHHHHhheeEEc
Confidence            355555555666655  99999999999999999998 88999999999987655          111111112233333


Q ss_pred             CCCCCcch------------hHHHHHHHHH--------HhcCCC-----------CCCC------------CCCceEEEE
Q 018543          100 SDAGFQDR------------YVVQEVIKEM--------AKNRPI-----------DTKG------------KRGFKVLVL  136 (354)
Q Consensus       100 ~~~~~~~~------------~~i~~~~~~~--------~~~~~~-----------~~~~------------~~~~~viii  136 (354)
                      ++.-...+            ...++++..+        -...|.           ++|+            ..+++|+++
T Consensus       554 Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL  633 (709)
T COG2274         554 QDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL  633 (709)
T ss_pred             ccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence            33221110            0011111111        000111           1221            158899999


Q ss_pred             eCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543          137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       137 DE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~  172 (354)
                      ||+ ..|+++....+.+.|.+...+..+|++|++++.
T Consensus       634 DEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~t  670 (709)
T COG2274         634 DEATSALDPETEAIILQNLLQILQGRTVIIIAHRLST  670 (709)
T ss_pred             eCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchH
Confidence            998 789999999999999888878889999998754

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.79  E-value=3.6e-08  Score=84.79  Aligned_cols=130  Identities=16%  Similarity=0.267  Sum_probs=74.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcc----------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD----------  106 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------  106 (354)
                      +.|.||+|+||||+++.+++ +..+..+.+.+++....  ... .           ..+.+.+++.....          
T Consensus        29 ~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~~~~~~--~~~-~-----------~~~~~~~q~~~~~~~~t~~~~~~~   93 (223)
T TIGR03740        29 YGLLGPNGAGKSTLLKMITG-ILRPTSGEIIFDGHPWT--RKD-L-----------HKIGSLIESPPLYENLTARENLKV   93 (223)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEecc--ccc-c-----------ccEEEEcCCCCccccCCHHHHHHH
Confidence            89999999999999999998 55677777777664322  000 0           01111111111100          


Q ss_pred             --------hhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-
Q 018543          107 --------RYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-  159 (354)
Q Consensus       107 --------~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-  159 (354)
                              ...+.++++.+.-     ..+..+++            ..+++++++||+ ..|+......+.+.+.+... 
T Consensus        94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~  173 (223)
T TIGR03740        94 HTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ  173 (223)
T ss_pred             HHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC
Confidence                    0112222222110     00111121            147899999997 88999999999999977543 


Q ss_pred             ceeEEEEecCCCcccHHHhhhcc
Q 018543          160 SCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       160 ~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      +..+|+++++.+ ..+.+.+|+.
T Consensus       174 ~~tiii~sH~~~-~~~~~~d~i~  195 (223)
T TIGR03740       174 GITVILSSHILS-EVQQLADHIG  195 (223)
T ss_pred             CCEEEEEcCCHH-HHHHhcCEEE
Confidence            345555555543 4455566653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=98.78  E-value=6.1e-08  Score=96.32  Aligned_cols=73  Identities=21%  Similarity=0.266  Sum_probs=53.2

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhcc-------------CceeEEEEecCCC-------------cccHHHhhhcce
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLILCCNSSS-------------KVTEAIRSRCLN  183 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~~-------------~l~~~l~sR~~~  183 (354)
                      ...+++|||++.|++..|.+|+..||+..             ..+.+|.++|...             .+++++.||+..
T Consensus       557 dgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDL  636 (915)
T PTZ00111        557 NGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDL  636 (915)
T ss_pred             CCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcE
Confidence            44699999999999999999999998642             4567777777532             588999999954


Q ss_pred             --eeecCCCHHHHHHHHHHHH
Q 018543          184 --IRINSPTEEQIVKVLEFIA  202 (354)
Q Consensus       184 --i~~~~~~~~~~~~~L~~~~  202 (354)
                        +-+..++.+.=..+..+++
T Consensus       637 If~l~D~~d~~~D~~lA~hI~  657 (915)
T PTZ00111        637 IYLVLDHIDQDTDQLISLSIA  657 (915)
T ss_pred             EEEecCCCChHHHHHHHHHHH
Confidence              4456666555444444443

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.78  E-value=2.9e-08  Score=83.63  Aligned_cols=137  Identities=17%  Similarity=0.263  Sum_probs=80.9

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF  104 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  104 (354)
                      +.-.++.|.+  +.+.||+|+||||+...++. +..++.+.+.+++.+..  ..+..   +. ..-...++.+..+.+..
T Consensus        24 v~l~i~~Ge~--vaI~GpSGSGKSTLLniig~-ld~pt~G~v~i~g~d~~--~l~~~---~~-~~~R~~~iGfvFQ~~nL   94 (226)
T COG1136          24 VNLEIEAGEF--VAIVGPSGSGKSTLLNLLGG-LDKPTSGEVLINGKDLT--KLSEK---EL-AKLRRKKIGFVFQNFNL   94 (226)
T ss_pred             ceEEEcCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCceEEECCEEcC--cCCHH---HH-HHHHHHhEEEECccCCC
Confidence            3334555665  89999999999999999987 77788888888875443  11100   00 00112234444444333


Q ss_pred             cchhHHHHHH----------------------HHHH-----h-cCCCCCCC------------CCCceEEEEeCC-CcCC
Q 018543          105 QDRYVVQEVI----------------------KEMA-----K-NRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (354)
Q Consensus       105 ~~~~~i~~~~----------------------~~~~-----~-~~~~~~~~------------~~~~~viiiDE~-d~l~  143 (354)
                      .+..++.+.+                      +.+.     . ..|..+|+            ..++++|+-||+ ..|+
T Consensus        95 l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD  174 (226)
T COG1136          95 LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD  174 (226)
T ss_pred             CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCC
Confidence            3222222222                      1110     0 11222332            157899999998 7899


Q ss_pred             HHHHHHHHHHHhhcc--CceeEEEEecCC
Q 018543          144 REAQHSLRRTMEKYS--ASCRLILCCNSS  170 (354)
Q Consensus       144 ~~~~~~Ll~~le~~~--~~~~~Il~~~~~  170 (354)
                      ....+.++..+.+..  .+..+|++|+++
T Consensus       175 ~~t~~~V~~ll~~~~~~~g~tii~VTHd~  203 (226)
T COG1136         175 SKTAKEVLELLRELNKERGKTIIMVTHDP  203 (226)
T ss_pred             hHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence            888888888886653  245677777764

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=1.9e-08  Score=92.01  Aligned_cols=146  Identities=20%  Similarity=0.272  Sum_probs=80.6

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  107 (354)
                      .+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++....  .....   +...  ....+.+.+++......
T Consensus        27 ~i~~Gei--~~iiG~nGsGKSTLlk~L~G-l~~p~~G~I~~~g~~i~--~~~~~---~~~~--~~~~ig~v~q~~~l~~~   96 (343)
T PRK11153         27 HIPAGEI--FGVIGASGAGKSTLIRCINL-LERPTSGRVLVDGQDLT--ALSEK---ELRK--ARRQIGMIFQHFNLLSS   96 (343)
T ss_pred             EEcCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECC--cCCHH---HHHH--HhcCEEEEeCCCccCCC
Confidence            3444544  89999999999999999998 66777788877775432  10000   0000  00112222221111110


Q ss_pred             ----------------------hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543          108 ----------------------YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (354)
Q Consensus       108 ----------------------~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (354)
                                            ..+.+.++.+.     ...+..+|+            ..+++++++||+ ..|++...
T Consensus        97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~  176 (343)
T PRK11153         97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT  176 (343)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence                                  01222222211     011111221            157899999998 78999999


Q ss_pred             HHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       148 ~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ..+++.+.+...  +..+|++|++.+ ....+.+|+.++
T Consensus       177 ~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l  214 (343)
T PRK11153        177 RSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVI  214 (343)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            999999876532  455666666654 445566665443

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.78  E-value=5.6e-08  Score=79.46  Aligned_cols=121  Identities=20%  Similarity=0.267  Sum_probs=71.6

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY  108 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  108 (354)
                      +..|..  +.+.||+|+||||+++.+++ +..+..+.+.+++.                     ..+.+.+++..... .
T Consensus        24 i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~~~---------------------~~i~~~~q~~~~~~-~   78 (166)
T cd03223          24 IKPGDR--LLITGPSGTGKSSLFRALAG-LWPWGSGRIGMPEG---------------------EDLLFLPQRPYLPL-G   78 (166)
T ss_pred             ECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCC---------------------ceEEEECCCCcccc-c
Confidence            344444  99999999999999999998 45666666555431                     01222222211111 1


Q ss_pred             HHHHHHHHHHhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccH
Q 018543          109 VVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE  175 (354)
Q Consensus       109 ~i~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~  175 (354)
                      ++.+.+...   ....+++            ..+++++++||+ ..|+...+..+.+.+.+.  ...+|+++++.+ +. 
T Consensus        79 tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~-~~-  151 (166)
T cd03223          79 TLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS-LW-  151 (166)
T ss_pred             cHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh-HH-
Confidence            222222110   0111110            246799999998 789999999999999875  356777777754 32 


Q ss_pred             HHhhhc
Q 018543          176 AIRSRC  181 (354)
Q Consensus       176 ~l~sR~  181 (354)
                      .+.+|+
T Consensus       152 ~~~d~i  157 (166)
T cd03223         152 KFHDRV  157 (166)
T ss_pred             hhCCEE
Confidence            354544

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.78  E-value=3.3e-08  Score=80.10  Aligned_cols=113  Identities=18%  Similarity=0.285  Sum_probs=64.8

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK  115 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~  115 (354)
                      .+.|.||+|+||||+++++++. ..+..+.+.+++....          ..........+.+.++   ......-+-.  
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~-~~~~~G~i~~~~~~~~----------~~~~~~~~~~i~~~~q---lS~G~~~r~~--   90 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGL-LKPTSGEILIDGKDIA----------KLPLEELRRRIGYVPQ---LSGGQRQRVA--   90 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CCCCccEEEECCEEcc----------cCCHHHHHhceEEEee---CCHHHHHHHH--
Confidence            3999999999999999999984 4556666666654322          0000000112233222   1111111111  


Q ss_pred             HHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCc-eeEEEEecCCC
Q 018543          116 EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSS  171 (354)
Q Consensus       116 ~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~~  171 (354)
                       ++...      ..+++++++||+ ..++......+.+.+.+.... ..+++++++.+
T Consensus        91 -l~~~l------~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~  141 (157)
T cd00267          91 -LARAL------LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE  141 (157)
T ss_pred             -HHHHH------hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence             11111      124589999998 689999999999988765433 45555555543

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=3.5e-08  Score=86.52  Aligned_cols=150  Identities=14%  Similarity=0.226  Sum_probs=80.4

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ce
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NH   94 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~   94 (354)
                      +.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++....  .....    +..+.+.          +.
T Consensus        20 vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~----~~~v~q~~~~~~~~tv~e~   90 (255)
T PRK11248         20 INLTLESGEL--LVVLGPSGCGKTTLLNLIAG-FVPYQHGSITLDGKPVE--GPGAE----RGVVFQNEGLLPWRNVQDN   90 (255)
T ss_pred             eeEEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECC--CCCCc----EEEEeCCCccCCCCcHHHH
Confidence            3333444544  99999999999999999998 56777787777765432  11100    0000000          00


Q ss_pred             eeeCCCCCCCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHH
Q 018543           95 VELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT  153 (354)
Q Consensus        95 i~~~~~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~  153 (354)
                      +.+.....+...   ...+.+.++.+.     ...+..+|+            ..+++++++||+ ..|++.....+.+.
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~  170 (255)
T PRK11248         91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL  170 (255)
T ss_pred             HHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence            000000000000   011233333221     111111221            147899999998 78999999999999


Q ss_pred             Hhhc-c-CceeEEEEecCCCcccHHHhhhccee
Q 018543          154 MEKY-S-ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       154 le~~-~-~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      |.+. . .+..+|++|++.+ ....+.+|..++
T Consensus       171 L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l  202 (255)
T PRK11248        171 LLKLWQETGKQVLLITHDIE-EAVFMATELVLL  202 (255)
T ss_pred             HHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            8765 2 2456666666654 334455554333

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.78  E-value=5.2e-08  Score=84.87  Aligned_cols=55  Identities=9%  Similarity=0.193  Sum_probs=38.6

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|+++++.. ....+.+|+.++
T Consensus       132 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l  189 (246)
T cd03237         132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVF  189 (246)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            57899999998 78999999988888876532  455666666543 445566665443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.78  E-value=2e-08  Score=91.88  Aligned_cols=145  Identities=17%  Similarity=0.275  Sum_probs=81.6

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  107 (354)
                      .+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..+.  .....   ..... ....+.+.++.......
T Consensus        15 ~i~~Gei--~~l~G~sGsGKSTLLr~L~G-l~~p~~G~I~i~G~~i~--~~~~~---~~~~~-rr~~i~~v~Q~~~l~~~   85 (363)
T TIGR01186        15 AIAKGEI--FVIMGLSGSGKSTTVRMLNR-LIEPTAGQIFIDGENIM--KQSPV---ELREV-RRKKIGMVFQQFALFPH   85 (363)
T ss_pred             EEcCCCE--EEEECCCCChHHHHHHHHhC-CCCCCceEEEECCEECC--cCCHH---HHHHH-HhCcEEEEECCCcCCCC
Confidence            3444554  99999999999999999998 66788888888886554  11100   00000 01122222222222211


Q ss_pred             hH----------------------HHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543          108 YV----------------------VQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (354)
Q Consensus       108 ~~----------------------i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (354)
                      .+                      +.++++.+     ....+..+|+            ..+++++++||+ ..|++...
T Consensus        86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r  165 (363)
T TIGR01186        86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR  165 (363)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            11                      12222211     1111111221            157899999997 78999998


Q ss_pred             HHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhcc
Q 018543          148 HSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       148 ~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      ..+.+.+.+..  .+..+|++|++.+.. ..+.+|+.
T Consensus       166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea-~~~~drI~  201 (363)
T TIGR01186       166 DSMQDELKKLQATLQKTIVFITHDLDEA-IRIGDRIV  201 (363)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence            88888886543  245677777665433 44556654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.77  E-value=6.9e-09  Score=86.07  Aligned_cols=135  Identities=15%  Similarity=0.235  Sum_probs=72.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccc----c---CceeeeCCCCCCCcchhH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS----S---ANHVELSPSDAGFQDRYV  109 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~i~~~~~~~~~~~~~~  109 (354)
                      +.|.||+|+||||+++.+++ +..++.+.+.+++.......+.... ..+..+.    .   ...+.-.+...  .... 
T Consensus        28 ~~l~G~nGsGKStLl~~i~G-~~~~~~G~v~~~g~~~~~~~~~~~~-~~i~~~~q~l~~~gl~~~~~~~~~~L--S~G~-  102 (180)
T cd03214          28 VGILGPNGAGKSTLLKTLAG-LLKPSSGEILLDGKDLASLSPKELA-RKIAYVPQALELLGLAHLADRPFNEL--SGGE-  102 (180)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCcCCHHHHH-HHHhHHHHHHHHcCCHhHhcCCcccC--CHHH-
Confidence            99999999999999999998 5566777777766533200000000 0000000    0   00000000000  0000 


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcceee
Q 018543          110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNIR  185 (354)
Q Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i~  185 (354)
                      .+. +. ++...      ..+++++++||+ ..|+......+.+.+.+...  +..+|+++++.+ ....+.+|+.++.
T Consensus       103 ~qr-l~-laral------~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~  172 (180)
T cd03214         103 RQR-VL-LARAL------AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLK  172 (180)
T ss_pred             HHH-HH-HHHHH------hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence            000 00 11100      246689999998 78999999999999977644  455666666554 3345556654443

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.77  E-value=2.4e-08  Score=87.79  Aligned_cols=54  Identities=17%  Similarity=0.213  Sum_probs=38.2

Q ss_pred             CceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +++++++||+ ..|++.....+.+.+.+..  .+..+|+++++. .....+.+|+..+
T Consensus       158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l  214 (258)
T PRK13548        158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLL  214 (258)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEE
Confidence            6899999997 7899999999999887654  234556665554 3445566665443

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.77  E-value=2.2e-08  Score=85.39  Aligned_cols=144  Identities=19%  Similarity=0.270  Sum_probs=77.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ceeeeCCC-CCCC
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELSPS-DAGF  104 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~-~~~~  104 (354)
                      .+.|.||+|+||||+++++++ +..+..+.+.+++.......+. +.  .+..+.+.          +.+.+... ....
T Consensus        26 ~~~l~G~nGsGKSTLl~~l~g-l~~~~~G~i~~~g~~~~~~~~~-~~--~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~  101 (211)
T cd03298          26 ITAIVGPSGSGKSTLLNLIAG-FETPQSGRVLINGVDVTAAPPA-DR--PVSMLFQENNLFAHLTVEQNVGLGLSPGLKL  101 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcCcCCHh-Hc--cEEEEecccccCCCCcHHHHHhcccccccCc
Confidence            399999999999999999998 5567778777776543200000 00  01111100          01111000 0000


Q ss_pred             --cchhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--cee
Q 018543          105 --QDRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCR  162 (354)
Q Consensus       105 --~~~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~  162 (354)
                        .....+.+.++.+.     ...+..+++            ..+++++++||+ ..|+...+..+.+.+.+...  ...
T Consensus       102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t  181 (211)
T cd03298         102 TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMT  181 (211)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence              00112333333321     111112221            157899999998 78999999999999976532  345


Q ss_pred             EEEEecCCCcccHHHhhhccee
Q 018543          163 LILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       163 ~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +|+++++.+ ..+.+.+|+.++
T Consensus       182 ii~~sH~~~-~~~~~~d~i~~l  202 (211)
T cd03298         182 VLMVTHQPE-DAKRLAQRVVFL  202 (211)
T ss_pred             EEEEecCHH-HHHhhhCEEEEE
Confidence            566555543 334455665444

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=98.77  E-value=5.9e-07  Score=85.45  Aligned_cols=109  Identities=17%  Similarity=0.170  Sum_probs=76.8

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCC
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSP  189 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~  189 (354)
                      +..+++|||++.|+...|..|++.+++..           .++++|++|+...       .+.+.+..|+.  .+.+||+
T Consensus       233 ~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppL  312 (441)
T PRK10365        233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSL  312 (441)
T ss_pred             CCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCCh
Confidence            45689999999999999999999997632           2356777776542       34455555654  4666666


Q ss_pred             CH--HHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 018543          190 TE--EQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ  238 (354)
Q Consensus       190 ~~--~~~~~~L~~~~~----~~~---~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~~~~  238 (354)
                      ..  +++.......+.    +.+   ..+++++++.+..+. .||+|++.+.++.++..
T Consensus       313 reR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~  371 (441)
T PRK10365        313 RQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL  371 (441)
T ss_pred             hhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence            42  344444444333    223   358999999999977 99999999999987654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.76  E-value=2.3e-08  Score=91.54  Aligned_cols=132  Identities=15%  Similarity=0.226  Sum_probs=79.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhH-------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV-------  109 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------  109 (354)
                      +.|.||+|+||||+.+++++ +..++.+.+.+++..+....+.            ...+.+.+++.......+       
T Consensus        33 ~~l~GpsGsGKSTLLr~iaG-l~~p~~G~I~i~g~~~~~~~~~------------~r~ig~v~Q~~~lfp~~tv~eNi~~   99 (353)
T TIGR03265        33 VCLLGPSGCGKTTLLRIIAG-LERQTAGTIYQGGRDITRLPPQ------------KRDYGIVFQSYALFPNLTVADNIAY   99 (353)
T ss_pred             EEEECCCCCCHHHHHHHHHC-CCCCCceEEEECCEECCCCCHH------------HCCEEEEeCCcccCCCCcHHHHHHH
Confidence            89999999999999999998 6778888888888755310000            111233333322222111       


Q ss_pred             ---------------HHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543          110 ---------------VQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       110 ---------------i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~  156 (354)
                                     +.++++.+.     ...+..+++            ..+++++++||+ ..|+......++..+.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~  179 (353)
T TIGR03265       100 GLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQ  179 (353)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence                           222222211     111111221            147899999997 78999998888888866


Q ss_pred             ccC--ceeEEEEecCCCcccHHHhhhcc
Q 018543          157 YSA--SCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       157 ~~~--~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      ...  +..+|++|++.+ ....+.+|+.
T Consensus       180 l~~~~~~tvi~vTHd~~-ea~~l~d~i~  206 (353)
T TIGR03265       180 LQRRLGVTTIMVTHDQE-EALSMADRIV  206 (353)
T ss_pred             HHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence            432  456777766654 3345566654

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.76  E-value=2.2e-08  Score=87.29  Aligned_cols=55  Identities=9%  Similarity=0.173  Sum_probs=39.1

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|+++++.+ ....+.+|+.++
T Consensus       152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l  209 (242)
T cd03295         152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIM  209 (242)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence            57899999998 78999999999998877532  455666666654 334555665433

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.76  E-value=2.6e-08  Score=90.61  Aligned_cols=150  Identities=19%  Similarity=0.239  Sum_probs=83.9

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  102 (354)
                      +.+.-.+..|..  +.|.||+|+||||++++++. +..++.+.+.+++....  .....   +...  ....+.+.+++.
T Consensus        22 ~~vsl~i~~Gei--~gIiG~sGaGKSTLlr~I~g-l~~p~~G~I~i~G~~i~--~~~~~---~l~~--~r~~Ig~v~Q~~   91 (343)
T TIGR02314        22 NNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNL-LERPTSGSVIVDGQDLT--TLSNS---ELTK--ARRQIGMIFQHF   91 (343)
T ss_pred             eeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECC--cCCHH---HHHH--HhcCEEEEECCc
Confidence            334434455544  89999999999999999998 67888888888876543  10000   0000  001122222221


Q ss_pred             CCcch----------------------hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcC
Q 018543          103 GFQDR----------------------YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKL  142 (354)
Q Consensus       103 ~~~~~----------------------~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l  142 (354)
                      .....                      ..+.++++.+.     ...+..+|+            ..+++++++||+ ..|
T Consensus        92 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~L  171 (343)
T TIGR02314        92 NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSAL  171 (343)
T ss_pred             cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC
Confidence            11110                      01222222211     011111221            147899999998 789


Q ss_pred             CHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       143 ~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      ++.....+++.+.+...  +..+|++|++. .....+.+|+.+
T Consensus       172 D~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~v  213 (343)
T TIGR02314       172 DPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAV  213 (343)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence            99999999998877543  45566666554 444566666643

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=2.2e-08  Score=91.84  Aligned_cols=140  Identities=13%  Similarity=0.234  Sum_probs=82.1

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  107 (354)
                      .+..|..  +.|.||+|+||||+.+++++ +..++.+.+.+++..+....+..            ..+.+.+++......
T Consensus        26 ~i~~Ge~--~~llG~sGsGKSTLLr~iaG-l~~p~~G~I~~~g~~i~~~~~~~------------r~ig~v~Q~~~lfp~   90 (356)
T PRK11650         26 DVADGEF--IVLVGPSGCGKSTLLRMVAG-LERITSGEIWIGGRVVNELEPAD------------RDIAMVFQNYALYPH   90 (356)
T ss_pred             EEcCCCE--EEEECCCCCcHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHH------------CCEEEEeCCccccCC
Confidence            3444543  88999999999999999998 67888888888887553100000            112222222211111


Q ss_pred             h----------------------HHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543          108 Y----------------------VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (354)
Q Consensus       108 ~----------------------~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (354)
                      .                      .+.+.++.+     ....+..+|+            ..+++++++||+ ..|+....
T Consensus        91 ~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r  170 (356)
T PRK11650         91 MSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLR  170 (356)
T ss_pred             CCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            1                      122222221     1111112221            257899999997 78999999


Q ss_pred             HHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       148 ~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      ..+++.+.+...  +..+|++|++... ...+.+|+.+
T Consensus       171 ~~l~~~l~~l~~~~g~tii~vTHd~~e-a~~l~D~i~v  207 (356)
T PRK11650        171 VQMRLEIQRLHRRLKTTSLYVTHDQVE-AMTLADRVVV  207 (356)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            988888866432  4567777776543 3455566543

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.75  E-value=2.6e-08  Score=86.36  Aligned_cols=54  Identities=17%  Similarity=0.318  Sum_probs=40.8

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+......+|+++++.+.+ +. .+|+.++
T Consensus       155 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~-~d~v~~l  209 (234)
T cd03251         155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTI-EN-ADRIVVL  209 (234)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-hh-CCEEEEe
Confidence            47899999997 8899999999999998765556677777776554 33 5665444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.75  E-value=2.6e-08  Score=86.66  Aligned_cols=152  Identities=17%  Similarity=0.242  Sum_probs=79.7

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ce
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NH   94 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~   94 (354)
                      +.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++........ .+.  .+..+.+.          ++
T Consensus        21 vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~-~~~--~i~~v~q~~~~~~~~tv~e~   94 (239)
T cd03296          21 VSLDIPSGEL--VALLGPSGSGKTTLLRLIAG-LERPDSGTILFGGEDATDVPV-QER--NVGFVFQHYALFRHMTVFDN   94 (239)
T ss_pred             eeEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCCc-ccc--ceEEEecCCcccCCCCHHHH
Confidence            3333444544  99999999999999999998 566777877777654320000 000  01111110          00


Q ss_pred             eeeCCCCCCC----cc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHH
Q 018543           95 VELSPSDAGF----QD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (354)
Q Consensus        95 i~~~~~~~~~----~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (354)
                      +.+.....+.    ..   ...+.+.++.+.     ...+..+++            ..+++++++||+ ..|++.....
T Consensus        95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~  174 (239)
T cd03296          95 VAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE  174 (239)
T ss_pred             HhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            0000000000    00   001222222221     111111221            147899999997 7899999999


Q ss_pred             HHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       150 Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +.+.+.+...  +..+|+++++.+. ...+.+|+.+
T Consensus       175 l~~~l~~~~~~~~~tvii~sH~~~~-~~~~~d~i~~  209 (239)
T cd03296         175 LRRWLRRLHDELHVTTVFVTHDQEE-ALEVADRVVV  209 (239)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            9999977532  4556676666542 3344455433

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.75  E-value=2.7e-08  Score=91.82  Aligned_cols=140  Identities=15%  Similarity=0.217  Sum_probs=80.2

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  107 (354)
                      .+..|..  +.|.||+|+||||+++++++ +..++.+.+.+++..+....+. +           ..+.+.+++......
T Consensus        25 ~i~~Ge~--~~l~G~nGsGKSTLL~~iaG-l~~p~~G~I~~~g~~i~~~~~~-~-----------~~i~~v~Q~~~l~~~   89 (369)
T PRK11000         25 DIHEGEF--VVFVGPSGCGKSTLLRMIAG-LEDITSGDLFIGEKRMNDVPPA-E-----------RGVGMVFQSYALYPH   89 (369)
T ss_pred             EEcCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHh-H-----------CCEEEEeCCcccCCC
Confidence            3444543  99999999999999999998 6677888888877654300000 0           112222222111110


Q ss_pred             ----------------------hHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543          108 ----------------------YVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (354)
Q Consensus       108 ----------------------~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (354)
                                            ..+.+.++.+.-     ..+..+|+            ..+++++++||+ ..|+....
T Consensus        90 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~  169 (369)
T PRK11000         90 LSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR  169 (369)
T ss_pred             CCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence                                  012222222110     01111221            157899999997 78999999


Q ss_pred             HHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       148 ~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      ..+++.+.+...  +..+|++|++.+ ....+.+|+.+
T Consensus       170 ~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~v  206 (369)
T PRK11000        170 VQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVV  206 (369)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            988888876532  456777776654 33455566543

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.75  E-value=2.8e-08  Score=86.65  Aligned_cols=54  Identities=7%  Similarity=0.190  Sum_probs=38.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|+++++.+ ....+.+|+.+
T Consensus       162 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~  218 (243)
T TIGR02315       162 QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVG  218 (243)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEE
Confidence            57899999998 78999999999999977532  455666666654 33455565543

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.75  E-value=1e-07  Score=80.17  Aligned_cols=123  Identities=15%  Similarity=0.200  Sum_probs=70.5

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcc---------
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD---------  106 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------  106 (354)
                      .+.|.||+|+||||+++++++ +..+..+.+.+++....  ....            ..+.+.++......         
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~i~--~~~~------------~~~~~~~~~~~~~~~~tv~~~l~   92 (195)
T PRK13541         28 ITYIKGANGCGKSSLLRMIAG-IMQPSSGNIYYKNCNIN--NIAK------------PYCTYIGHNLGLKLEMTVFENLK   92 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCcccC--hhhh------------hhEEeccCCcCCCccCCHHHHHH
Confidence            389999999999999999998 56777777777765432  0000            00111111111000         


Q ss_pred             --------hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhc-cC
Q 018543          107 --------RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SA  159 (354)
Q Consensus       107 --------~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~-~~  159 (354)
                              ...+.+.++.+.     ......+++            ..+++++++||+ ..+++.....+.+.+.+. ..
T Consensus        93 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~  172 (195)
T PRK13541         93 FWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANS  172 (195)
T ss_pred             HHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence                    011222222211     001111111            147899999998 789999999998888643 23


Q ss_pred             ceeEEEEecCCCcc
Q 018543          160 SCRLILCCNSSSKV  173 (354)
Q Consensus       160 ~~~~Il~~~~~~~l  173 (354)
                      +..+|+++++.+.+
T Consensus       173 ~~tiii~sh~~~~i  186 (195)
T PRK13541        173 GGIVLLSSHLESSI  186 (195)
T ss_pred             CCEEEEEeCCcccc
Confidence            46677777776543

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.75  E-value=1.4e-08  Score=88.15  Aligned_cols=54  Identities=24%  Similarity=0.312  Sum_probs=38.5

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|+++++.+ ....+.+|+..
T Consensus       170 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~  226 (236)
T cd03267         170 HEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLV  226 (236)
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEE
Confidence            47899999997 88999999999999977532  355666666543 44455555443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.74  E-value=5.6e-08  Score=82.57  Aligned_cols=149  Identities=13%  Similarity=0.168  Sum_probs=79.3

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ceeeeC
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELS   98 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~   98 (354)
                      +..|..  +.|.||+|+||||+++.+++ +..+..+.+.+++....  .+..+.  .+..+...          +.+.+.
T Consensus        25 i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~--~~~~~~--~~~~~~~~~~~~~~~tv~~~l~~~   97 (207)
T PRK13539         25 LAAGEA--LVLTGPNGSGKTTLLRLIAG-LLPPAAGTIKLDGGDID--DPDVAE--ACHYLGHRNAMKPALTVAENLEFW   97 (207)
T ss_pred             EcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEeCc--chhhHh--hcEEecCCCcCCCCCcHHHHHHHH
Confidence            344443  89999999999999999998 55667777777664321  000000  00001000          000000


Q ss_pred             CCCCCCcchhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhc-cC
Q 018543           99 PSDAGFQDRYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SA  159 (354)
Q Consensus        99 ~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~-~~  159 (354)
                      ....+ .....+.+.++.+.-     .....+++            ..+++++++||+ ..++......+++.+.+. ..
T Consensus        98 ~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  176 (207)
T PRK13539         98 AAFLG-GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ  176 (207)
T ss_pred             HHhcC-CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence            00000 000112333332211     11111121            147899999997 789999999999998764 33


Q ss_pred             ceeEEEEecCCCcccHHHhhhcceeeecCCC
Q 018543          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPT  190 (354)
Q Consensus       160 ~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~  190 (354)
                      ...+|+++++.+.+..     ..++.+.+|+
T Consensus       177 ~~tiii~sH~~~~~~~-----~~~~~~~~~~  202 (207)
T PRK13539        177 GGIVIAATHIPLGLPG-----ARELDLGPFA  202 (207)
T ss_pred             CCEEEEEeCCchhhcc-----CcEEeecCcc
Confidence            4567777777665543     3345555554

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.74  E-value=3.1e-08  Score=85.54  Aligned_cols=54  Identities=20%  Similarity=0.354  Sum_probs=39.8

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+...+..+|+++++.+.+ + ..+|+.++
T Consensus       156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~-~~d~i~~l  210 (229)
T cd03254         156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTI-K-NADKILVL  210 (229)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-h-hCCEEEEE
Confidence            57899999998 7899999999999997765556677777766543 3 24555433

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.74  E-value=2.7e-08  Score=88.18  Aligned_cols=148  Identities=21%  Similarity=0.313  Sum_probs=82.3

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (354)
                      .+.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..+.  ....+   ..     ...+.+.+++
T Consensus        21 l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~---~~-----~~~i~~v~q~   87 (274)
T PRK13647         21 LKGLSLSIPEGSK--TALLGPNGAGKSTLLLHLNG-IYLPQRGRVKVMGREVN--AENEK---WV-----RSKVGLVFQD   87 (274)
T ss_pred             eeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCceEEEECCEECC--CCCHH---HH-----HhhEEEEecC
Confidence            3334444455544  99999999999999999998 66777888888776442  10000   00     0011111111


Q ss_pred             C--------------------CCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-C
Q 018543          102 A--------------------GFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-D  140 (354)
Q Consensus       102 ~--------------------~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d  140 (354)
                      .                    +...   ...+.+.++.+.     ...+..+++            ..+++++++||+ .
T Consensus        88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~  167 (274)
T PRK13647         88 PDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA  167 (274)
T ss_pred             hhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            1                    0000   001222222211     011111221            157899999998 7


Q ss_pred             cCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543          141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       141 ~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .|++..+..+++.+.+... +..+|++|++.+ ....+.+|+.+
T Consensus       168 ~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~  210 (274)
T PRK13647        168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIV  210 (274)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            8999999999999976543 455666666544 34456666543

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.74  E-value=3.3e-08  Score=90.44  Aligned_cols=143  Identities=14%  Similarity=0.211  Sum_probs=82.3

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF  104 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  104 (354)
                      +.-.++.|..  +.|.||+|+||||+++++++ +..++.+.+.+++..+....+.            ...+.+.++++..
T Consensus        25 isl~i~~Ge~--~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~~~g~~i~~~~~~------------~r~ig~vfQ~~~l   89 (351)
T PRK11432         25 LNLTIKQGTM--VTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFIDGEDVTHRSIQ------------QRDICMVFQSYAL   89 (351)
T ss_pred             eEEEEcCCCE--EEEECCCCCcHHHHHHHHHC-CCCCCceEEEECCEECCCCCHH------------HCCEEEEeCCccc
Confidence            3333444544  99999999999999999998 6778888888888655310010            0112222222221


Q ss_pred             cchh----------------------HHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCH
Q 018543          105 QDRY----------------------VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (354)
Q Consensus       105 ~~~~----------------------~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~  144 (354)
                      ....                      .+.+.++.+     ....+..+|+            ..+++++++||+ ..|+.
T Consensus        90 fp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~  169 (351)
T PRK11432         90 FPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA  169 (351)
T ss_pred             CCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH
Confidence            1111                      112222211     1111112221            147899999997 78999


Q ss_pred             HHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       145 ~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .....++..+.+...  +..+|++|++.+. ...+.+|+.+
T Consensus       170 ~~r~~l~~~l~~l~~~~g~tii~vTHd~~e-~~~laD~i~v  209 (351)
T PRK11432        170 NLRRSMREKIRELQQQFNITSLYVTHDQSE-AFAVSDTVIV  209 (351)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEE
Confidence            988888888865432  4566666666543 3455666543

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.74  E-value=3.9e-08  Score=84.91  Aligned_cols=55  Identities=18%  Similarity=0.228  Sum_probs=38.9

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|+++++.+ ..+.+.+|+.++
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l  219 (228)
T cd03257         162 LNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVM  219 (228)
T ss_pred             cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEE
Confidence            47899999997 78999999999999976543  455666666654 334455555433

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=3.3e-08  Score=85.88  Aligned_cols=158  Identities=13%  Similarity=0.136  Sum_probs=80.9

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc---------
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN---------   93 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   93 (354)
                      +.+.-.++.|..  +.|.||+|+||||+++++++ +..+..+.+.+++...............+..+.+..         
T Consensus        22 ~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   98 (237)
T PRK11614         22 HEVSLHINQGEI--VTLIGANGAGKTTLLGTLCG-DPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE   98 (237)
T ss_pred             eeeEEEEcCCcE--EEEECCCCCCHHHHHHHHcC-CCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHH
Confidence            333334445544  99999999999999999998 556777777777654320000000000011111100         


Q ss_pred             -eeeeCCCCCCCcc-hhHHHHHHHHHH------hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543           94 -HVELSPSDAGFQD-RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus        94 -~i~~~~~~~~~~~-~~~i~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                       .+.+......... ...+.+.++.+.      ...+..+++            ..+++++++||+ ..|+......+.+
T Consensus        99 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~  178 (237)
T PRK11614         99 ENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFD  178 (237)
T ss_pred             HHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHH
Confidence             0000000000000 011222222221      111111221            147899999997 8899999999999


Q ss_pred             HHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          153 TMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       153 ~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+.+... +..+|+++++.+ ....+.+|+.++
T Consensus       179 ~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  210 (237)
T PRK11614        179 TIEQLREQGMTIFLVEQNAN-QALKLADRGYVL  210 (237)
T ss_pred             HHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEE
Confidence            8876533 455566655543 334556665443

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.73  E-value=2.7e-08  Score=84.43  Aligned_cols=43  Identities=7%  Similarity=0.180  Sum_probs=34.0

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCC
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~  171 (354)
                      .+++++++||+ ..|++..+..+.+.+.+... +..+|+++++..
T Consensus       151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~  195 (206)
T TIGR03608       151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE  195 (206)
T ss_pred             cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            57899999998 78999999999999976533 456677777654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.73  E-value=2.7e-08  Score=96.85  Aligned_cols=134  Identities=16%  Similarity=0.250  Sum_probs=80.1

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (354)
                      .+.+.-.++.|+.  +.+.||+|+||||+++.+++ ++.++.+.+.+++.+..          ++ ...-...+.+.+++
T Consensus       351 L~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g-~~~p~~G~I~i~g~~i~----------~~-~~~lr~~i~~V~Q~  416 (529)
T TIGR02868       351 LDGVSLDLPPGER--VAILGPSGSGKSTLLMLLTG-LLDPLQGEVTLDGVSVS----------SL-QDELRRRISVFAQD  416 (529)
T ss_pred             eecceEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhh----------hH-HHHHHhheEEEccC
Confidence            3334434444544  99999999999999999997 77888888888876543          11 10001122222222


Q ss_pred             CCCc---------------chhHHHHHHHHH-----HhcCC-----------CCCCC------------CCCceEEEEeC
Q 018543          102 AGFQ---------------DRYVVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLNE  138 (354)
Q Consensus       102 ~~~~---------------~~~~i~~~~~~~-----~~~~~-----------~~~~~------------~~~~~viiiDE  138 (354)
                      ....               ....+.+.++..     -...|           ..+++            -.+++++++||
T Consensus       417 ~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE  496 (529)
T TIGR02868       417 AHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE  496 (529)
T ss_pred             cccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            1111               111222222221     00001           11221            15789999999


Q ss_pred             C-CcCCHHHHHHHHHHHhhccCceeEEEEecC
Q 018543          139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (354)
Q Consensus       139 ~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~  169 (354)
                      + ..++++....+.+.+.+..++..+|++|++
T Consensus       497 ~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr  528 (529)
T TIGR02868       497 PTEHLDAGTESELLEDLLAALSGKTVVVITHH  528 (529)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            8 779999999999999876666777777775

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.73  E-value=2.1e-06  Score=89.18  Aligned_cols=209  Identities=15%  Similarity=0.192  Sum_probs=115.9

Q ss_pred             CCcccccC-CCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543            1 MLWVDKYR-PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (354)
Q Consensus         1 ~~w~ekyr-P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
                      |+-.-|+. |..-.+++-.+.+.+.|...   ...+-++++||+|+||||++..++... . ...-+.++..+-   .+.
T Consensus         1 ~~~~~k~~~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~-~-~~~w~~l~~~d~---~~~   72 (903)
T PRK04841          1 MLIPSKLSRPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK-N-NLGWYSLDESDN---QPE   72 (903)
T ss_pred             CCcccccCCCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC-C-CeEEEecCcccC---CHH
Confidence            44455665 55567788788777766532   233449999999999999998877532 1 110011111100   000


Q ss_pred             ccccccccccccC--c----eeeeCCCCCCCcc-hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHH-HHHHH
Q 018543           80 RNIDLELTTLSSA--N----HVELSPSDAGFQD-RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-QHSLR  151 (354)
Q Consensus        80 ~~~~~~~~~~~~~--~----~i~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-~~~Ll  151 (354)
                      .-...-+..+...  .    ...... ..+... ...+..++..+..        ...+-+|||||+|.++... ...+.
T Consensus        73 ~f~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~--------~~~~~~lvlDD~h~~~~~~~~~~l~  143 (903)
T PRK04841         73 RFASYLIAALQQATNGHCSKSEALAQ-KRQYASLSSLFAQLFIELAD--------WHQPLYLVIDDYHLITNPEIHEAMR  143 (903)
T ss_pred             HHHHHHHHHHHHhcCcccchhhhhhc-cCCcCCHHHHHHHHHHHHhc--------CCCCEEEEEeCcCcCCChHHHHHHH
Confidence            0000000000000  0    000000 000000 0122233332222        1345799999999987544 44666


Q ss_pred             HHHhhccCceeEEEEecCCCcc-cHHHhhhc--ceeeec--CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 018543          152 RTMEKYSASCRLILCCNSSSKV-TEAIRSRC--LNIRIN--SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR  226 (354)
Q Consensus       152 ~~le~~~~~~~~Il~~~~~~~l-~~~l~sR~--~~i~~~--~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R  226 (354)
                      .+++..+++..+|+++.....+ ...++-+-  ..+...  +++.++....+...   .|..++++.+..+.+.++|.+-
T Consensus       144 ~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~t~Gwp~  220 (903)
T PRK04841        144 FFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDDVEGWAT  220 (903)
T ss_pred             HHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCChHH
Confidence            6667777888888887764433 23333333  344444  88999999999753   3778899999999999999985


Q ss_pred             HHH
Q 018543          227 RAI  229 (354)
Q Consensus       227 ~ai  229 (354)
                      -..
T Consensus       221 ~l~  223 (903)
T PRK04841        221 ALQ  223 (903)
T ss_pred             HHH
Confidence            543

>PRK09183 transposase/IS protein; Provisional

Probab=98.73  E-value=3.1e-08  Score=86.79  Aligned_cols=61  Identities=20%  Similarity=0.298  Sum_probs=40.1

Q ss_pred             CceEEEEeCCCc--CCHHHHHHHHHHHhhccCceeEEEEecCCCc-----------ccHHHhhh----cceeeecCCC
Q 018543          130 GFKVLVLNEVDK--LSREAQHSLRRTMEKYSASCRLILCCNSSSK-----------VTEAIRSR----CLNIRINSPT  190 (354)
Q Consensus       130 ~~~viiiDE~d~--l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~-----------l~~~l~sR----~~~i~~~~~~  190 (354)
                      ...++||||++.  ++...++.|+.++.....+..+|+++|.+..           +..++.+|    |.+|.|...+
T Consensus       164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~g~s  241 (259)
T PRK09183        164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGES  241 (259)
T ss_pred             CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEEEeecCCC
Confidence            347999999976  4566777899988654344568888887641           12355565    4567776544

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.73  E-value=3.2e-08  Score=90.79  Aligned_cols=140  Identities=14%  Similarity=0.246  Sum_probs=81.2

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCC--cccccccccccccCCCccccccccccccCceeeeCCCCCCCcc
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD  106 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  106 (354)
                      +..|..  +.|.||+|+||||+.++++. +..++.  +.+.+++..+.- .+..           ...+.+..++.....
T Consensus        28 i~~Ge~--~~llGpsGsGKSTLLr~iaG-l~~p~~~~G~i~~~g~~~~~-~~~~-----------~r~ig~vfQ~~~l~p   92 (362)
T TIGR03258        28 IEAGEL--LALIGKSGCGKTTLLRAIAG-FVKAAGLTGRIAIADRDLTH-APPH-----------KRGLALLFQNYALFP   92 (362)
T ss_pred             ECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCCCEEEEECCEECCC-CCHH-----------HCCEEEEECCcccCC
Confidence            444443  89999999999999999998 667777  888887765430 0000           011222222222111


Q ss_pred             hh----------------------HHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543          107 RY----------------------VVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (354)
Q Consensus       107 ~~----------------------~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (354)
                      ..                      .+.+.++.+.     ...+..+|+            ..+++++++||+ ..|+...
T Consensus        93 ~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~  172 (362)
T TIGR03258        93 HLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANI  172 (362)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence            11                      1222222211     111111221            157899999997 8899999


Q ss_pred             HHHHHHHHhhccC---ceeEEEEecCCCcccHHHhhhccee
Q 018543          147 QHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       147 ~~~Ll~~le~~~~---~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ...|++.|.+...   +..+|++|++.+. ...+.+|..++
T Consensus       173 r~~l~~~l~~l~~~~~g~til~vTHd~~e-a~~l~dri~vl  212 (362)
T TIGR03258       173 RANMREEIAALHEELPELTILCVTHDQDD-ALTLADKAGIM  212 (362)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            9999988866543   3556666666543 35566776443

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.73  E-value=3.9e-08  Score=86.42  Aligned_cols=55  Identities=15%  Similarity=0.205  Sum_probs=39.1

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus       154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  210 (256)
T TIGR03873       154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVL  210 (256)
T ss_pred             cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            47899999998 78999999999998877643 345666666554 445556665433

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.73  E-value=4.8e-08  Score=85.04  Aligned_cols=156  Identities=15%  Similarity=0.177  Sum_probs=82.4

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC---------c
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA---------N   93 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~   93 (354)
                      +.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++.......+.... ..+..+.+.         +
T Consensus        20 ~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~-~~i~~~~q~~~~~~~tv~e   95 (241)
T PRK14250         20 KDISVKFEGGAI--YTIVGPSGAGKSTLIKLINR-LIDPTEGSILIDGVDIKTIDVIDLR-RKIGMVFQQPHLFEGTVKD   95 (241)
T ss_pred             eeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEhhhcChHHhh-hcEEEEecCchhchhhHHH
Confidence            333334444543  99999999999999999998 5677788887777543200000000 001111010         0


Q ss_pred             eeeeCCCCCCCcchhHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHH
Q 018543           94 HVELSPSDAGFQDRYVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM  154 (354)
Q Consensus        94 ~i~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~l  154 (354)
                      .+.+... ........+.++++.+.-      ..+..+++            ..+++++++||+ ..|+......+.+.+
T Consensus        96 ~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  174 (241)
T PRK14250         96 NIEYGPM-LKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI  174 (241)
T ss_pred             HHhcchh-hcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            0000000 000001122333332211      11111221            157899999997 789999999888888


Q ss_pred             hhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          155 EKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       155 e~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+...  +..+|++|++.+ ....+.+|+.++
T Consensus       175 ~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l  205 (241)
T PRK14250        175 VKLKNKMNLTVIWITHNME-QAKRIGDYTAFL  205 (241)
T ss_pred             HHHHHhCCCEEEEEeccHH-HHHHhCCEEEEE
Confidence            76532  455666666654 345566766444

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.73  E-value=4.8e-08  Score=83.35  Aligned_cols=144  Identities=17%  Similarity=0.263  Sum_probs=76.9

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ceeeeCCCC-CCC
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELSPSD-AGF  104 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~-~~~  104 (354)
                      .+.|.||+|+||||+++++++ +..+..+.+.+++....  ...... ..+..+.+.          +.+.+.... ...
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~--~~~~~~-~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~  101 (213)
T TIGR01277        26 IVAIMGPSGAGKSTLLNLIAG-FIEPASGSIKVNDQSHT--GLAPYQ-RPVSMLFQENNLFAHLTVRQNIGLGLHPGLKL  101 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEcc--cCChhc-cceEEEeccCccCCCCcHHHHHHhHhhccCCc
Confidence            399999999999999999998 56777787777775432  100000 001111000          000000000 000


Q ss_pred             --cchhHHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--cee
Q 018543          105 --QDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCR  162 (354)
Q Consensus       105 --~~~~~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~  162 (354)
                        .....+.+.++.+     ....+..+++            ..+++++++||+ ..|+...+..+.+.+.+...  +..
T Consensus       102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t  181 (213)
T TIGR01277       102 NAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRT  181 (213)
T ss_pred             cHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence              0001122223221     1111111221            247899999998 78999999999999977542  456


Q ss_pred             EEEEecCCCcccHHHhhhccee
Q 018543          163 LILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       163 ~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +|+++++.+ ....+.+|+..+
T Consensus       182 ii~vsh~~~-~~~~~~d~v~~l  202 (213)
T TIGR01277       182 LLMVTHHLS-DARAIASQIAVV  202 (213)
T ss_pred             EEEEeCCHH-HHHhhcCeEEEE
Confidence            666666654 334455555443

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.73  E-value=4.2e-08  Score=84.49  Aligned_cols=156  Identities=14%  Similarity=0.249  Sum_probs=81.0

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC---------c
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA---------N   93 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~   93 (354)
                      +.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++.......+.... ..+..+.+.         +
T Consensus        24 ~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~-~~i~~~~q~~~l~~~tv~e   99 (225)
T PRK10247         24 NNISFSLRAGEF--KLITGPSGCGKSTLLKIVAS-LISPTSGTLLFEGEDISTLKPEIYR-QQVSYCAQTPTLFGDTVYD   99 (225)
T ss_pred             eccEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCCeEEECCEEcCcCCHHHHH-hccEEEecccccccccHHH
Confidence            333333444443  99999999999999999998 5677778777776533200000000 000001000         0


Q ss_pred             eeeeCCCCCCC-cchhHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHH
Q 018543           94 HVELSPSDAGF-QDRYVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT  153 (354)
Q Consensus        94 ~i~~~~~~~~~-~~~~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~  153 (354)
                      .+.+...-.+. .....+.+.++.+.-      ..+..+++            ..+++++++||+ ..|++.....+.+.
T Consensus       100 nl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~  179 (225)
T PRK10247        100 NLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEI  179 (225)
T ss_pred             HHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            00000000000 001112233332211      11111121            157899999997 88999999999998


Q ss_pred             Hhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543          154 MEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       154 le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +.+..  .+..+|+++++.+.+ + ..+|+..+
T Consensus       180 l~~~~~~~~~tvii~sh~~~~~-~-~~d~i~~l  210 (225)
T PRK10247        180 IHRYVREQNIAVLWVTHDKDEI-N-HADKVITL  210 (225)
T ss_pred             HHHHHHhcCCEEEEEECChHHH-H-hCCEEEEE
Confidence            87753  245677777776544 3 35555444

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.73  E-value=4.1e-08  Score=84.68  Aligned_cols=54  Identities=11%  Similarity=0.195  Sum_probs=38.9

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++.....+.+.+.+......+|+++++.+ ....+.+|+.+
T Consensus       158 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~~  212 (227)
T cd03260         158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQ-QAARVADRTAF  212 (227)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHH-HHHHhCCEEEE
Confidence            47899999998 78999999999999977654555666665544 44455566533

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.73  E-value=4.2e-08  Score=85.40  Aligned_cols=53  Identities=15%  Similarity=0.202  Sum_probs=36.9

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+.
T Consensus       154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~  208 (241)
T PRK10895        154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAY  208 (241)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEE
Confidence            57899999998 78999999888888876543 445666665543 3444555553

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=3.9e-08  Score=87.15  Aligned_cols=54  Identities=9%  Similarity=0.223  Sum_probs=39.9

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|+++++.+.+ . +.+|+.++
T Consensus       159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~-~-~~d~v~~l  215 (271)
T PRK13632        159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-I-LADKVIVF  215 (271)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH-h-hCCEEEEE
Confidence            47899999997 88999999999999977543  35677777777654 3 45665433

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.73  E-value=3.3e-08  Score=86.01  Aligned_cols=55  Identities=18%  Similarity=0.337  Sum_probs=39.4

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..++......+.+.+.+... +..+|++|++.+ ..+.+.+|+.++
T Consensus       153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  209 (240)
T PRK09493        153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFI  209 (240)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            47899999998 78999999999999876543 455666666654 345556665433

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.72  E-value=5.4e-08  Score=84.07  Aligned_cols=144  Identities=19%  Similarity=0.276  Sum_probs=76.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc------cccCceeeeCCCC--CCCcc--
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT------LSSANHVELSPSD--AGFQD--  106 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~--~~~~~--  106 (354)
                      +.|.||+|+||||+++++++ +..+..+.+.+++....  .......+-...      .+-.+.+.+....  .+...  
T Consensus        14 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~   90 (230)
T TIGR01184        14 ISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQIT--EPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSE   90 (230)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECC--CCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHH
Confidence            89999999999999999998 55677787877765432  110000000000      0000001010000  00000  


Q ss_pred             -hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEE
Q 018543          107 -RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLIL  165 (354)
Q Consensus       107 -~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il  165 (354)
                       ...+.+.++.+.     ...+..+|+            ..+++++++||+ ..|++.....+.+.+.+...  +..+|+
T Consensus        91 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~  170 (230)
T TIGR01184        91 RRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM  170 (230)
T ss_pred             HHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence             011223332211     111111221            147899999998 78999999999998876432  455666


Q ss_pred             EecCCCcccHHHhhhccee
Q 018543          166 CCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       166 ~~~~~~~l~~~l~sR~~~i  184 (354)
                      ++++.+ ....+.+|+.++
T Consensus       171 ~sH~~~-~~~~~~d~v~~l  188 (230)
T TIGR01184       171 VTHDVD-EALLLSDRVVML  188 (230)
T ss_pred             EeCCHH-HHHHhcCEEEEE
Confidence            666654 334455555444

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=3.9e-08  Score=85.15  Aligned_cols=45  Identities=7%  Similarity=0.165  Sum_probs=35.5

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKV  173 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l  173 (354)
                      .+++++++||+ ..|++.....+.+.+.+..  .+..+|+++++.+.+
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~  209 (233)
T PRK11629        162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA  209 (233)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            47899999997 7899999999999997753  346677777776543

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.72  E-value=3e-08  Score=85.81  Aligned_cols=155  Identities=18%  Similarity=0.299  Sum_probs=86.0

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC----CccccccccccccCceee----
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG----SRNIDLELTTLSSANHVE----   96 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~----   96 (354)
                      +.--+++|+.  +-|.||+|+||||+.|++|+ |..++.+.+.++++.+.....    .-+.++-+..-.-..|+.    
T Consensus        21 i~l~i~~Ge~--vaLlGpSGaGKsTlLRiIAG-Le~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~N   97 (345)
T COG1118          21 ISLDIKSGEL--VALLGPSGAGKSTLLRIIAG-LETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADN   97 (345)
T ss_pred             ceeeecCCcE--EEEECCCCCcHHHHHHHHhC-cCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhh
Confidence            3444556665  88999999999999999998 888999999998884430000    001111100000001111    


Q ss_pred             --eCC--C--CC-CCcchhHHHHHHHHH-----HhcCCCCCCCC------------CCceEEEEeCC-CcCCHHHHHHHH
Q 018543           97 --LSP--S--DA-GFQDRYVVQEVIKEM-----AKNRPIDTKGK------------RGFKVLVLNEV-DKLSREAQHSLR  151 (354)
Q Consensus        97 --~~~--~--~~-~~~~~~~i~~~~~~~-----~~~~~~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll  151 (354)
                        +-.  .  .. ....+..+.++++.+     +...|..+++.            .+++|+++||+ ..|+......|.
T Consensus        98 IAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr  177 (345)
T COG1118          98 IAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELR  177 (345)
T ss_pred             hhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHH
Confidence              000  0  00 001112344444332     33334334432            47899999997 778887777777


Q ss_pred             HHHhhcc--CceeEEEEecCCCcccHHHhhhcce
Q 018543          152 RTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       152 ~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +.|.+..  -++..+++|++.... -.+.+|+.+
T Consensus       178 ~wLr~~~~~~~~ttvfVTHD~eea-~~ladrvvv  210 (345)
T COG1118         178 RWLRKLHDRLGVTTVFVTHDQEEA-LELADRVVV  210 (345)
T ss_pred             HHHHHHHHhhCceEEEEeCCHHHH-HhhcceEEE
Confidence            7775532  247788888876533 245556543

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=3.8e-08  Score=86.47  Aligned_cols=55  Identities=15%  Similarity=0.158  Sum_probs=39.1

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+... +..+|++|++.+ ..+.+.+|+.++
T Consensus       155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l  211 (255)
T PRK11231        155 QDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVL  211 (255)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEE
Confidence            47899999997 88999999999999976543 455666666544 445555665443

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.72  E-value=9.6e-08  Score=76.07  Aligned_cols=111  Identities=17%  Similarity=0.279  Sum_probs=68.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~  116 (354)
                      +.+.||+|+||||+++++++ +..+..+.+.+++.                     ..+.+.++   ..... .+.+.  
T Consensus        29 ~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~~~---------------------~~i~~~~~---lS~G~-~~rv~--   80 (144)
T cd03221          29 IGLVGRNGAGKSTLLKLIAG-ELEPDEGIVTWGST---------------------VKIGYFEQ---LSGGE-KMRLA--   80 (144)
T ss_pred             EEEECCCCCCHHHHHHHHcC-CCCCCceEEEECCe---------------------EEEEEEcc---CCHHH-HHHHH--
Confidence            89999999999999999998 45566665555432                     11223222   11111 11111  


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          117 MAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       117 ~~~~~~~~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ++...      ..+++++++||+ ..++......+.+.+.+.  ...+++++++.+ ..+.+.+|+.++
T Consensus        81 laral------~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~-~~~~~~d~v~~l  140 (144)
T cd03221          81 LAKLL------LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRY-FLDQVATKIIEL  140 (144)
T ss_pred             HHHHH------hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHH-HHHHhCCEEEEE
Confidence            11111      235689999997 789999999999999775  245555555543 334555555443

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.72  E-value=4.1e-08  Score=83.20  Aligned_cols=141  Identities=15%  Similarity=0.198  Sum_probs=74.4

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------eeee
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN----------HVEL   97 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~   97 (354)
                      .+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++....  .........+..+....          .+.+
T Consensus        23 ~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~p~~G~v~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~   97 (204)
T PRK13538         23 TLNAGEL--VQIEGPNGAGKTSLLRILAG-LARPDAGEVLWQGEPIR--RQRDEYHQDLLYLGHQPGIKTELTALENLRF   97 (204)
T ss_pred             EECCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEcc--cchHHhhhheEEeCCccccCcCCcHHHHHHH
Confidence            3444443  99999999999999999998 55677787777765432  00000000000000000          0000


Q ss_pred             CCCCCCCcchhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-
Q 018543           98 SPSDAGFQDRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-  158 (354)
Q Consensus        98 ~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-  158 (354)
                      .....+......+.+.++.+.     ......+++            ..+++++++||+ ..|+......+.+.+.+.. 
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  177 (204)
T PRK13538         98 YQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE  177 (204)
T ss_pred             HHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence            000000001111222222211     111111121            257899999998 7899999999999987653 


Q ss_pred             CceeEEEEecCCCcc
Q 018543          159 ASCRLILCCNSSSKV  173 (354)
Q Consensus       159 ~~~~~Il~~~~~~~l  173 (354)
                      .+..+|+++++.+.+
T Consensus       178 ~~~tiii~sh~~~~i  192 (204)
T PRK13538        178 QGGMVILTTHQDLPV  192 (204)
T ss_pred             CCCEEEEEecChhhh
Confidence            345677777765543

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=2.7e-08  Score=88.46  Aligned_cols=150  Identities=17%  Similarity=0.258  Sum_probs=82.2

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccC-----------cee
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSA-----------NHV   95 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~i   95 (354)
                      .+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++....  ...... ...+..+.+.           +.+
T Consensus        29 ~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~--~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni  103 (279)
T PRK13650         29 HVKQGEW--LSIIGHNGSGKSTTVRLIDG-LLEAESGQIIIDGDLLT--EENVWDIRHKIGMVFQNPDNQFVGATVEDDV  103 (279)
T ss_pred             EEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECC--cCcHHHHHhhceEEEcChHHhcccccHHHHH
Confidence            3444544  99999999999999999998 56778888888776542  100000 0000000000           001


Q ss_pred             eeCCCCCCCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHH
Q 018543           96 ELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM  154 (354)
Q Consensus        96 ~~~~~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~l  154 (354)
                      .+.....+...   ...+.+.++.+.     ...+..+++            ..+++++++||+ ..|++.....+.+.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l  183 (279)
T PRK13650        104 AFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTI  183 (279)
T ss_pred             HhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            11000001111   011222222211     111112221            157899999997 889999999999988


Q ss_pred             hhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          155 EKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       155 e~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+...  +..+|++|++.+.+ . ..+|+.++
T Consensus       184 ~~l~~~~g~tilivtH~~~~~-~-~~dri~~l  213 (279)
T PRK13650        184 KGIRDDYQMTVISITHDLDEV-A-LSDRVLVM  213 (279)
T ss_pred             HHHHHhcCCEEEEEecCHHHH-H-hCCEEEEE
Confidence            76543  46677777776654 3 46676444

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.72  E-value=8e-08  Score=81.15  Aligned_cols=130  Identities=13%  Similarity=0.154  Sum_probs=74.0

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc--
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ--  105 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--  105 (354)
                      .+..|..  +.|.||+|+||||+++.+++ +..+..+.+.+++....  ....    ..     ...+.+.+++....  
T Consensus        23 ~i~~Ge~--~~l~G~nGsGKSTLl~~i~G-~~~~~~G~v~~~g~~~~--~~~~----~~-----~~~i~~~~q~~~~~~~   88 (200)
T PRK13540         23 HLPAGGL--LHLKGSNGAGKTTLLKLIAG-LLNPEKGEILFERQSIK--KDLC----TY-----QKQLCFVGHRSGINPY   88 (200)
T ss_pred             EECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCeeEEECCCccc--cCHH----HH-----HhheEEeccccccCcC
Confidence            3344443  99999999999999999998 66777777777765432  0000    00     00111111111100  


Q ss_pred             ---------------chhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          106 ---------------DRYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       106 ---------------~~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                                     ....+.+.++.+.-     .....+++            ..+++++++||+ ..|+......+.+
T Consensus        89 ~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~  168 (200)
T PRK13540         89 LTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIIT  168 (200)
T ss_pred             CCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH
Confidence                           00112333332210     01111221            257899999997 8899999999999


Q ss_pred             HHhhcc-CceeEEEEecCCC
Q 018543          153 TMEKYS-ASCRLILCCNSSS  171 (354)
Q Consensus       153 ~le~~~-~~~~~Il~~~~~~  171 (354)
                      .+.+.. ....+|+++++..
T Consensus       169 ~l~~~~~~~~tiii~sh~~~  188 (200)
T PRK13540        169 KIQEHRAKGGAVLLTSHQDL  188 (200)
T ss_pred             HHHHHHHcCCEEEEEeCCch
Confidence            997653 3456777777654

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.72  E-value=1.1e-07  Score=80.07  Aligned_cols=45  Identities=11%  Similarity=0.130  Sum_probs=35.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhc-cCceeEEEEecCCCcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCNSSSKV  173 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~~l  173 (354)
                      .+++++++||+ ..|+......+.+.+.+. ..+..+|++++++..+
T Consensus       144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~  190 (198)
T TIGR01189       144 SRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL  190 (198)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence            57899999998 789999999999999764 2345677777776543

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=4.4e-08  Score=87.06  Aligned_cols=152  Identities=15%  Similarity=0.258  Sum_probs=79.8

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc-----------eee
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN-----------HVE   96 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~i~   96 (354)
                      .+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++........ ......+..+.+..           .+.
T Consensus        26 ~i~~Ge~--~~i~G~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~-~~~~~~i~~v~q~~~~~~~~~tv~~~l~  101 (277)
T PRK13652         26 IAPRNSR--IAVIGPNGAGKSTLFRHFNG-ILKPTSGSVLIRGEPITKENI-REVRKFVGLVFQNPDDQIFSPTVEQDIA  101 (277)
T ss_pred             EEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCcCCH-HHHHhheEEEecCcccccccccHHHHHH
Confidence            3444443  89999999999999999998 667788888877764320000 00000000000000           000


Q ss_pred             eCCCCCCCcch---hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHh
Q 018543           97 LSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME  155 (354)
Q Consensus        97 ~~~~~~~~~~~---~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le  155 (354)
                      +.....+....   ..+.+.++.+.     ...+..+|+            ..+++++++||+ ..|++.....+++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~  181 (277)
T PRK13652        102 FGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN  181 (277)
T ss_pred             hHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            00000000000   01222222211     111111221            157899999998 7899999999999987


Q ss_pred             hccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          156 KYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       156 ~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +...  +..+|++|++.+ ....+.+|+.++
T Consensus       182 ~l~~~~g~tvli~tH~~~-~~~~~~drv~~l  211 (277)
T PRK13652        182 DLPETYGMTVIFSTHQLD-LVPEMADYIYVM  211 (277)
T ss_pred             HHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence            6543  355666665554 444566776443

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.72  E-value=4.1e-08  Score=90.43  Aligned_cols=139  Identities=17%  Similarity=0.319  Sum_probs=81.1

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  107 (354)
                      .+..|..  +.|.||+|+||||+.+++++ +..++.+.+.+++..+.- .+..+           ..+.+.+++......
T Consensus        36 ~i~~Ge~--~~LlGpsGsGKSTLLr~IaG-l~~p~~G~I~~~g~~i~~-~~~~~-----------r~ig~vfQ~~~lfp~  100 (375)
T PRK09452         36 TINNGEF--LTLLGPSGCGKTTVLRLIAG-FETPDSGRIMLDGQDITH-VPAEN-----------RHVNTVFQSYALFPH  100 (375)
T ss_pred             EEeCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCC-CCHHH-----------CCEEEEecCcccCCC
Confidence            3444543  89999999999999999998 667888888888876531 01000           112222222211111


Q ss_pred             h----------------------HHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543          108 Y----------------------VVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (354)
Q Consensus       108 ~----------------------~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (354)
                      .                      .+.+.++.+     ....+..+++            ..+++++++||+ ..|+....
T Consensus       101 ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r  180 (375)
T PRK09452        101 MTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR  180 (375)
T ss_pred             CCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence            1                      122222211     1111111221            147899999997 78999999


Q ss_pred             HHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcc
Q 018543          148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       148 ~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      ..|++.|.+...  +..+|++|++... ...+.+|+.
T Consensus       181 ~~l~~~L~~l~~~~g~tiI~vTHd~~e-a~~laDri~  216 (375)
T PRK09452        181 KQMQNELKALQRKLGITFVFVTHDQEE-ALTMSDRIV  216 (375)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEE
Confidence            888888876532  4667777766543 344556654

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.71  E-value=6.8e-08  Score=84.60  Aligned_cols=55  Identities=13%  Similarity=0.127  Sum_probs=39.8

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+...+..+|+++++.+ ....+.+|+.++
T Consensus       163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  218 (250)
T PRK14247        163 FQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQ-QAARISDYVAFL  218 (250)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence            47899999997 78999999999999977654555666666554 344555665444

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.71  E-value=9.4e-08  Score=81.19  Aligned_cols=146  Identities=15%  Similarity=0.257  Sum_probs=81.0

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (354)
                      .+.+.-.+..|..  +.+.||+|+||||+++++++ +..+..+.+.+++....  .....   .     ....+.+.+++
T Consensus        24 l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~--~~~~~---~-----~~~~i~~v~q~   90 (207)
T cd03369          24 LKNVSFKVKAGEK--IGIVGRTGAGKSTLILALFR-FLEAEEGKIEIDGIDIS--TIPLE---D-----LRSSLTIIPQD   90 (207)
T ss_pred             ccCceEEECCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCCeEEECCEEhH--HCCHH---H-----HHhhEEEEecC
Confidence            3333333444443  99999999999999999998 55677777777665332  00000   0     00011111111


Q ss_pred             CCC--------------cchhHHHHHHHHHHhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHH
Q 018543          102 AGF--------------QDRYVVQEVIKEMAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTM  154 (354)
Q Consensus       102 ~~~--------------~~~~~i~~~~~~~~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~l  154 (354)
                      ...              .....+.+.++ . ......+++            ..+++++++||+ ..|++.....+.+.+
T Consensus        91 ~~~~~~tv~~~l~~~~~~~~~~~~~~l~-~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l  168 (207)
T cd03369          91 PTLFSGTIRSNLDPFDEYSDEEIYGALR-V-SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTI  168 (207)
T ss_pred             CcccCccHHHHhcccCCCCHHHHHHHhh-c-cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            100              01111222222 1 111111221            147899999997 789999999999999


Q ss_pred             hhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          155 EKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       155 e~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+...+..+|++|++.+.+ .. .+|+.++
T Consensus       169 ~~~~~~~tiii~th~~~~~-~~-~d~v~~l  196 (207)
T cd03369         169 REEFTNSTILTIAHRLRTI-ID-YDKILVM  196 (207)
T ss_pred             HHhcCCCEEEEEeCCHHHH-hh-CCEEEEE
Confidence            8765556677777776544 22 4555433

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.71  E-value=3e-08  Score=88.16  Aligned_cols=157  Identities=15%  Similarity=0.219  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccC-------
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSA-------   92 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------   92 (354)
                      +.+.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..+.  ...... ...+..+.+.       
T Consensus        22 ~l~~vsl~i~~Ge~--~~i~G~nGaGKSTLl~~i~G-~~~p~~G~i~~~g~~i~--~~~~~~~~~~i~~~~q~~~~~~~~   96 (279)
T PRK13635         22 ALKDVSFSVYEGEW--VAIVGHNGSGKSTLAKLLNG-LLLPEAGTITVGGMVLS--EETVWDVRRQVGMVFQNPDNQFVG   96 (279)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECC--cCcHHHHhhheEEEEeCHHHhccc
Confidence            33444444555554  89999999999999999998 56778888888876543  110000 0000000000       


Q ss_pred             ----ceeeeCCCCCCCcch---hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543           93 ----NHVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (354)
Q Consensus        93 ----~~i~~~~~~~~~~~~---~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (354)
                          +.+.+.....+....   ..+.+.++.+.     ...+..+|+            ..+++++++||+ ..|++..+
T Consensus        97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~  176 (279)
T PRK13635         97 ATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR  176 (279)
T ss_pred             ccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence                000000000000000   01222222211     111111221            157899999997 78999999


Q ss_pred             HHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       148 ~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ..+.+.+.+...  +..+|+++++.+.+ +. .+|+.++
T Consensus       177 ~~l~~~l~~l~~~~~~tilivsH~~~~~-~~-~d~i~~l  213 (279)
T PRK13635        177 REVLETVRQLKEQKGITVLSITHDLDEA-AQ-ADRVIVM  213 (279)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEecCHHHH-Hc-CCEEEEE
Confidence            999999976543  46677777776644 33 5665443

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=3.8e-07  Score=82.30  Aligned_cols=173  Identities=23%  Similarity=0.320  Sum_probs=104.5

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK  115 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~  115 (354)
                      ++|+.||.|+|||.+++.+|+-+.-|-.    +               .+|.++++.          |+.. ..+..++.
T Consensus       228 NvLllGPtGsGKTllaqTLAr~ldVPfa----I---------------cDcTtLTQA----------GYVG-eDVEsvi~  277 (564)
T KOG0745|consen  228 NVLLLGPTGSGKTLLAQTLARVLDVPFA----I---------------CDCTTLTQA----------GYVG-EDVESVIQ  277 (564)
T ss_pred             cEEEECCCCCchhHHHHHHHHHhCCCeE----E---------------ecccchhhc----------cccc-ccHHHHHH
Confidence            5999999999999999999996632210    0               133333322          1111 12334444


Q ss_pred             HHHhcCCCCCCCCCCceEEEEeCCCcCC--------------HHHHHHHHHHHhhcc-------------------Ccee
Q 018543          116 EMAKNRPIDTKGKRGFKVLVLNEVDKLS--------------REAQHSLRRTMEKYS-------------------ASCR  162 (354)
Q Consensus       116 ~~~~~~~~~~~~~~~~~viiiDE~d~l~--------------~~~~~~Ll~~le~~~-------------------~~~~  162 (354)
                      .+......+. ...+..||+|||+|.+.              +..|++|++++|-..                   .+.-
T Consensus       278 KLl~~A~~nV-ekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtn  356 (564)
T KOG0745|consen  278 KLLQEAEYNV-EKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTN  356 (564)
T ss_pred             HHHHHccCCH-HHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccc
Confidence            4333332211 13456899999999985              357999999997421                   1122


Q ss_pred             EEEEecCCC----------------------------------------------------------cccHHHhhhcc-e
Q 018543          163 LILCCNSSS----------------------------------------------------------KVTEAIRSRCL-N  183 (354)
Q Consensus       163 ~Il~~~~~~----------------------------------------------------------~l~~~l~sR~~-~  183 (354)
                      +.|+|.-.-                                                          .++|.+.-|+- +
T Consensus       357 ILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVl  436 (564)
T KOG0745|consen  357 ILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVL  436 (564)
T ss_pred             eEEEecccccchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceE
Confidence            444433100                                                          12344444543 5


Q ss_pred             eeecCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHhcC
Q 018543          184 IRINSPTEEQIVKVLEFI-----------AKKEG--LQLPSGFATRLAEKS---NRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       184 i~~~~~~~~~~~~~L~~~-----------~~~~~--~~i~~~~l~~i~~~s---~gd~R~ai~~L~~~~~~~  239 (354)
                      +.|.+++.+++..+|..=           ....+  +.+++++++.|++.+   +..+|-...+||.+.+..
T Consensus       437 Vplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Llea  508 (564)
T KOG0745|consen  437 VPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEA  508 (564)
T ss_pred             eeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhh
Confidence            789999999999988531           11123  357899999999864   345777778888776653

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.71  E-value=4e-08  Score=85.58  Aligned_cols=54  Identities=9%  Similarity=0.188  Sum_probs=38.9

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++.....+.+.+.+..  .+..+|+++++.+. ...+.+|+.+
T Consensus       161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~~~~d~v~~  217 (241)
T cd03256         161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVG  217 (241)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            47899999998 7899999999999887653  24566666666543 3455566543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.71  E-value=3.7e-08  Score=85.82  Aligned_cols=53  Identities=15%  Similarity=0.226  Sum_probs=37.9

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.
T Consensus       158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~  212 (242)
T PRK11124        158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVV  212 (242)
T ss_pred             cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEE
Confidence            47899999998 78999999999999977543 345556555554 3345556653

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.71  E-value=1.6e-08  Score=79.13  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=29.5

Q ss_pred             eEEEEeCCCcC-CHHHHHHHHHHHhhccCceeEEEEecC
Q 018543          132 KVLVLNEVDKL-SREAQHSLRRTMEKYSASCRLILCCNS  169 (354)
Q Consensus       132 ~viiiDE~d~l-~~~~~~~Ll~~le~~~~~~~~Il~~~~  169 (354)
                      .+|||||+|.+ +.+..+.|...++  ..++.+|++.+.
T Consensus        89 ~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~  125 (131)
T PF13401_consen   89 VLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP  125 (131)
T ss_dssp             EEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred             eEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence            69999999999 8888888877777  456788888765

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.70  E-value=1.2e-08  Score=87.75  Aligned_cols=143  Identities=17%  Similarity=0.222  Sum_probs=73.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch---hHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---YVVQEV  113 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~i~~~  113 (354)
                      +.|.||+|+||||+++++++ +..+..+.+.+++....  .......+. ...+-.+.+.+.....+....   ..+.++
T Consensus        51 ~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~--~~~~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~  126 (224)
T cd03220          51 IGLIGRNGAGKSTLLRLLAG-IYPPDSGTVTVRGRVSS--LLGLGGGFN-PELTGRENIYLNGRLLGLSRKEIDEKIDEI  126 (224)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEch--hhcccccCC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            99999999999999999998 55677777777665321  000000000 000000011100000000000   012222


Q ss_pred             HHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCc-eeEEEEecCCCccc
Q 018543          114 IKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVT  174 (354)
Q Consensus       114 ~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~~~l~  174 (354)
                      ++.+.     ......+++            ..+++++++||+ ..|+...+..+.+.+.+.... ..+|+++++.+ ..
T Consensus       127 l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~  205 (224)
T cd03220         127 IEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SI  205 (224)
T ss_pred             HHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH
Confidence            22211     001111121            157899999997 789999999999888765333 45566555543 33


Q ss_pred             HHHhhhccee
Q 018543          175 EAIRSRCLNI  184 (354)
Q Consensus       175 ~~l~sR~~~i  184 (354)
                      ..+.+|+.++
T Consensus       206 ~~~~d~i~~l  215 (224)
T cd03220         206 KRLCDRALVL  215 (224)
T ss_pred             HHhCCEEEEE
Confidence            4455555433

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.70  E-value=4.3e-08  Score=84.62  Aligned_cols=43  Identities=19%  Similarity=0.217  Sum_probs=34.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCC
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~  171 (354)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|+++++.+
T Consensus       163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~  208 (228)
T PRK10584        163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ  208 (228)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            57899999997 78999999999999976532  456777777765

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.70  E-value=4.5e-08  Score=82.71  Aligned_cols=151  Identities=19%  Similarity=0.219  Sum_probs=80.5

Q ss_pred             HHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------
Q 018543           24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN----------   93 (354)
Q Consensus        24 ~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   93 (354)
                      .+.-.+..|..  +.|.||+|+||||+.+.+++ +..+..+.+.+++.........-+.  .+..+.+..          
T Consensus        18 ~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~--~i~~~~q~~~~~~~~tv~e   92 (201)
T cd03231          18 GLSFTLAAGEA--LQVTGPNGSGKTTLLRILAG-LSPPLAGRVLLNGGPLDFQRDSIAR--GLLYLGHAPGIKTTLSVLE   92 (201)
T ss_pred             cceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccccHHhhh--heEEeccccccCCCcCHHH
Confidence            33334444544  99999999999999999998 5567777777766543200000000  010110000          


Q ss_pred             eeeeCCCCCCCcchhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHh
Q 018543           94 HVELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME  155 (354)
Q Consensus        94 ~i~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le  155 (354)
                      .+.+..   .......+.+.++.+.-     .....+++            ..+++++++||+ ..|++.....+.+.+.
T Consensus        93 ~l~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  169 (201)
T cd03231          93 NLRFWH---ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMA  169 (201)
T ss_pred             HHHhhc---ccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            000000   00011122333332211     01111121            247899999997 7899999999999886


Q ss_pred             hcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543          156 KYS-ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       156 ~~~-~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +.. .+..+|+++++...+.. ..+|+..
T Consensus       170 ~~~~~g~tiii~sH~~~~~~~-~~~~~~~  197 (201)
T cd03231         170 GHCARGGMVVLTTHQDLGLSE-AGARELD  197 (201)
T ss_pred             HHHhCCCEEEEEecCchhhhh-ccceeEe
Confidence            643 34567777776665544 5555533

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.70  E-value=8.4e-08  Score=82.37  Aligned_cols=45  Identities=20%  Similarity=0.395  Sum_probs=36.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l  173 (354)
                      .+++++++||+ ..|++..+..+.+.+.+...+..+|+++++.+.+
T Consensus       156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~  201 (221)
T cd03244         156 RKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTI  201 (221)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence            47899999998 7899999999999998765556677777776544

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.70  E-value=4.1e-08  Score=85.23  Aligned_cols=55  Identities=16%  Similarity=0.248  Sum_probs=39.1

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+....+.+.+.+.+...  ...+|++|++.+ ..+.+.+|+..+
T Consensus       147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l  204 (237)
T TIGR00968       147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVM  204 (237)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEE
Confidence            47899999998 78999999999999977543  355666666553 335555665433

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.70  E-value=6.5e-08  Score=84.72  Aligned_cols=55  Identities=13%  Similarity=0.239  Sum_probs=39.0

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus       161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l  217 (250)
T PRK11264        161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFM  217 (250)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence            47899999998 78999999999998876543 445666655543 445556665444

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.69  E-value=1.8e-07  Score=73.86  Aligned_cols=43  Identities=23%  Similarity=0.436  Sum_probs=36.3

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~   74 (354)
                      +..|..  +.++||+||||||+.+.+|. +..++.+.+.+.|+.++
T Consensus        26 v~~Ge~--iaitGPSG~GKStllk~va~-Lisp~~G~l~f~Ge~vs   68 (223)
T COG4619          26 VRAGEF--IAITGPSGCGKSTLLKIVAS-LISPTSGTLLFEGEDVS   68 (223)
T ss_pred             ecCCce--EEEeCCCCccHHHHHHHHHh-ccCCCCceEEEcCcccc
Confidence            344444  89999999999999999998 77899998888888765

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=5.6e-08  Score=90.14  Aligned_cols=139  Identities=15%  Similarity=0.252  Sum_probs=77.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch---------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---------  107 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------  107 (354)
                      +.|.||+|+||||+++++++ +..+..+.+.+++..+.  .....   ..... ....+.+.+++......         
T Consensus        57 ~~LvG~NGsGKSTLLr~I~G-l~~p~sG~I~i~G~~i~--~~~~~---~l~~~-~~~~igyv~Q~~~l~~~~Tv~enl~~  129 (400)
T PRK10070         57 FVIMGLSGSGKSTMVRLLNR-LIEPTRGQVLIDGVDIA--KISDA---ELREV-RRKKIAMVFQSFALMPHMTVLDNTAF  129 (400)
T ss_pred             EEEECCCCchHHHHHHHHHc-CCCCCCCEEEECCEECC--cCCHH---HHHHH-HhCCEEEEECCCcCCCCCCHHHHHHH
Confidence            89999999999999999998 66788888888776543  10000   00000 00012222221111110         


Q ss_pred             -------------hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543          108 -------------YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       108 -------------~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~  156 (354)
                                   ..+.+.++.+.     ...+..+|+            ..+++++++||+ ..|++.....+.+.+.+
T Consensus       130 ~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~  209 (400)
T PRK10070        130 GMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVK  209 (400)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence                         11222222221     111111221            147899999997 78999999988888866


Q ss_pred             cc--CceeEEEEecCCCcccHHHhhhcce
Q 018543          157 YS--ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       157 ~~--~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      ..  .+..+|++|++.+. ...+.+|+.+
T Consensus       210 l~~~~g~TIIivTHd~~~-~~~~~Dri~v  237 (400)
T PRK10070        210 LQAKHQRTIVFISHDLDE-AMRIGDRIAI  237 (400)
T ss_pred             HHHHCCCeEEEEECCHHH-HHHhCCEEEE
Confidence            53  24566777766543 3445556543

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=5e-08  Score=84.41  Aligned_cols=142  Identities=18%  Similarity=0.318  Sum_probs=77.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ceeeeCCC-CCCCc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELSPS-DAGFQ  105 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~-~~~~~  105 (354)
                      +.|.||+|+||||+++.+++ +..+..+.+.+++..........+   .+..+.+.          +.+.+... .....
T Consensus        28 ~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~---~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  103 (232)
T PRK10771         28 VAILGPSGAGKSTLLNLIAG-FLTPASGSLTLNGQDHTTTPPSRR---PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLN  103 (232)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCeecCcCChhhc---cEEEEecccccccCCcHHHHHhcccccccCCC
Confidence            99999999999999999998 556777877777754320000000   01111110          00110000 00000


Q ss_pred             --chhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeE
Q 018543          106 --DRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRL  163 (354)
Q Consensus       106 --~~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~  163 (354)
                        ....+.++++.+.     ...+..+++            ..+++++++||+ ..|+...+..+.+.+.+...  +..+
T Consensus       104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~ti  183 (232)
T PRK10771        104 AAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTL  183 (232)
T ss_pred             HHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence              0111333333221     111112221            257899999998 78999999999999977532  4566


Q ss_pred             EEEecCCCcccHHHhhhcce
Q 018543          164 ILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       164 Il~~~~~~~l~~~l~sR~~~  183 (354)
                      |+++++.+ ..+.+.+|+.+
T Consensus       184 ii~sH~~~-~~~~~~d~i~~  202 (232)
T PRK10771        184 LMVSHSLE-DAARIAPRSLV  202 (232)
T ss_pred             EEEECCHH-HHHHhCCEEEE
Confidence            66666655 33455566543

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=4.6e-08  Score=86.58  Aligned_cols=151  Identities=15%  Similarity=0.186  Sum_probs=79.8

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCce-----------ee
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH-----------VE   96 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------i~   96 (354)
                      .+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..... .+.......+..+.+...           +.
T Consensus        31 ~i~~Ge~--~~I~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~-~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~  106 (269)
T PRK13648         31 NIPKGQW--TSIVGHNGSGKSTIAKLMIG-IEKVKSGEIFYNNQAITD-DNFEKLRKHIGIVFQNPDNQFVGSIVKYDVA  106 (269)
T ss_pred             EEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCc-CCHHHHHhheeEEEeChHHhcccccHHHHHH
Confidence            3344443  89999999999999999998 567777888887764420 000000000111110000           00


Q ss_pred             eCCCCCCCcch---hHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHh
Q 018543           97 LSPSDAGFQDR---YVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME  155 (354)
Q Consensus        97 ~~~~~~~~~~~---~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le  155 (354)
                      +.....+....   ..+.++++.+.-     ..+..+++            ..+++++++||+ ..|++.....+.+.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~  186 (269)
T PRK13648        107 FGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVR  186 (269)
T ss_pred             hhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            00000000000   112222222211     11111221            147899999998 8899999999999887


Q ss_pred             hccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          156 KYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       156 ~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +...  +..+|+++++.+.+. . .+|+.++
T Consensus       187 ~~~~~~~~tiiivtH~~~~~~-~-~d~i~~l  215 (269)
T PRK13648        187 KVKSEHNITIISITHDLSEAM-E-ADHVIVM  215 (269)
T ss_pred             HHHHhcCCEEEEEecCchHHh-c-CCEEEEE
Confidence            6532  456777777766543 3 5665433

>PF05729 NACHT: NACHT domain

Probab=98.69  E-value=2.5e-07  Score=75.39  Aligned_cols=74  Identities=16%  Similarity=0.209  Sum_probs=47.6

Q ss_pred             CceEEEEeCCCcCCHHHH--------HHHHHHHhh-ccCceeEEEEecCCCc-ccHHHhhhcceeeecCCCHHHHHHHHH
Q 018543          130 GFKVLVLNEVDKLSREAQ--------HSLRRTMEK-YSASCRLILCCNSSSK-VTEAIRSRCLNIRINSPTEEQIVKVLE  199 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~--------~~Ll~~le~-~~~~~~~Il~~~~~~~-l~~~l~sR~~~i~~~~~~~~~~~~~L~  199 (354)
                      +.-++|||-+|.+.....        ..|...+.. .+.+++++++|+.... -..........+.+.+++.+++..+++
T Consensus        81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  160 (166)
T PF05729_consen   81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR  160 (166)
T ss_pred             CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence            446899999988865332        234455554 3556778887764432 122222223678999999999999998


Q ss_pred             HHHH
Q 018543          200 FIAK  203 (354)
Q Consensus       200 ~~~~  203 (354)
                      +...
T Consensus       161 ~~f~  164 (166)
T PF05729_consen  161 KYFS  164 (166)
T ss_pred             HHhh
Confidence            7653

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.69  E-value=4.6e-08  Score=84.02  Aligned_cols=44  Identities=7%  Similarity=0.101  Sum_probs=34.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSK  172 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~  172 (354)
                      .+++++++||+ ..|+......+.+.+.+..  .+..+|+++++.+.
T Consensus       158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~  204 (221)
T TIGR02211       158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL  204 (221)
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            47899999998 7899999999999987653  24567777777653

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.69  E-value=9.6e-08  Score=81.95  Aligned_cols=54  Identities=15%  Similarity=0.292  Sum_probs=40.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+......+|+++++.+ +. .+.+|+..+
T Consensus       157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~-~~~d~v~~l  211 (220)
T cd03245         157 NDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPS-LL-DLVDRIIVM  211 (220)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HH-HhCCEEEEE
Confidence            47899999998 88999999999999987655556677776665 33 455555443

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.69  E-value=5.7e-08  Score=85.82  Aligned_cols=55  Identities=13%  Similarity=0.122  Sum_probs=39.4

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|+++++.+ ....+.+|+.++
T Consensus       160 ~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l  217 (265)
T PRK10253        160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIAL  217 (265)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            47899999998 78999999999999977543  345666655544 455666666433

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.69  E-value=7.8e-08  Score=82.07  Aligned_cols=152  Identities=17%  Similarity=0.291  Sum_probs=81.5

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------   92 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   92 (354)
                      +.+.-.+..|..  +.|.||+|+||||+++.+++ +..++.+.+.+++....  ....    .+..+.+.          
T Consensus        16 ~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~--~~~~----~i~~v~q~~~~~~~~~~t   86 (213)
T cd03235          16 EDVSFEVKPGEF--LAIVGPNGAGKSTLLKAILG-LLKPTSGSIRVFGKPLE--KERK----RIGYVPQRRSIDRDFPIS   86 (213)
T ss_pred             ecceeEEcCCCE--EEEECCCCCCHHHHHHHHcC-CCCCCCCEEEECCccHH--HHHh----heEEeccccccccCCCCc
Confidence            334444445544  99999999999999999998 55677777777764321  0000    01111100          


Q ss_pred             --ceeeeCCCCC-C---C-c--chhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHH
Q 018543           93 --NHVELSPSDA-G---F-Q--DRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSRE  145 (354)
Q Consensus        93 --~~i~~~~~~~-~---~-~--~~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~  145 (354)
                        +.+.+..... .   . .  ....+.+.++.+.     ...+..+|+            ..+++++++||+ ..|++.
T Consensus        87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~  166 (213)
T cd03235          87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK  166 (213)
T ss_pred             HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence              0011100000 0   0 0  0112233333221     111112221            147899999998 889999


Q ss_pred             HHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhccee
Q 018543          146 AQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       146 ~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ....+.+.+.+.. .+..+|+++++.+ ....+.+|+.++
T Consensus       167 ~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l  205 (213)
T cd03235         167 TQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLL  205 (213)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence            9999999987754 3455666666654 334455555443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.68  E-value=8.5e-08  Score=82.20  Aligned_cols=158  Identities=19%  Similarity=0.301  Sum_probs=86.7

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc----cCCCccccccccc----c---ccCc
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI----DAGSRNIDLELTT----L---SSAN   93 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~---~~~~   93 (354)
                      +...+..|..  +++.||+|+||||+++.++. +..+..+.+.+++..+..    ..-..+.++-+..    +   +-.+
T Consensus        23 v~~~i~~Ge~--~~i~G~nGsGKSTL~~~l~G-Ll~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~   99 (235)
T COG1122          23 VSLEIEKGER--VLLIGPNGSGKSTLLKLLNG-LLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVED   99 (235)
T ss_pred             eEEEECCCCE--EEEECCCCCCHHHHHHHHcC-cCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHH
Confidence            3334444544  99999999999999999998 778888888777754330    0000000000000    0   0000


Q ss_pred             eeeeCCCCCCCcchh---HHHHHHHHHH-----hcCCCCCCCC------------CCceEEEEeCC-CcCCHHHHHHHHH
Q 018543           94 HVELSPSDAGFQDRY---VVQEVIKEMA-----KNRPIDTKGK------------RGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus        94 ~i~~~~~~~~~~~~~---~i~~~~~~~~-----~~~~~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                      .+.+-+...+.....   .+.+.+..+.     ...+..+|+.            -+++++++||+ -.|++.....+++
T Consensus       100 evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~  179 (235)
T COG1122         100 EVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE  179 (235)
T ss_pred             HHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence            011222222322211   2233332222     2233334432            36889999998 7889999999999


Q ss_pred             HHhhccCc--eeEEEEecCCCcccHHHhhhcceeee
Q 018543          153 TMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNIRI  186 (354)
Q Consensus       153 ~le~~~~~--~~~Il~~~~~~~l~~~l~sR~~~i~~  186 (354)
                      .+.+....  ..+|++|++ -.......+|+.++.=
T Consensus       180 ~l~~L~~~~~~tii~~tHd-~~~~~~~ad~v~vl~~  214 (235)
T COG1122         180 LLKKLKEEGGKTIIIVTHD-LELVLEYADRVVVLDD  214 (235)
T ss_pred             HHHHHHhcCCCeEEEEeCc-HHHHHhhCCEEEEEEC
Confidence            99876544  345555554 4444566677655443

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.68  E-value=6.1e-08  Score=89.46  Aligned_cols=133  Identities=15%  Similarity=0.239  Sum_probs=75.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhH-------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV-------  109 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------  109 (354)
                      +.|.||+|+||||+.+++|+ +..++.+.+.+++..+.. -+..           ...+.+.+++.......+       
T Consensus        48 ~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~i~g~~i~~-~~~~-----------~r~ig~vfQ~~~lfp~ltv~eNi~~  114 (377)
T PRK11607         48 FALLGASGCGKSTLLRMLAG-FEQPTAGQIMLDGVDLSH-VPPY-----------QRPINMMFQSYALFPHMTVEQNIAF  114 (377)
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCC-CCHH-----------HCCEEEEeCCCccCCCCCHHHHHHH
Confidence            89999999999999999998 677888888888765430 0000           011222222222211111       


Q ss_pred             ---------------HHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543          110 ---------------VQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       110 ---------------i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~  156 (354)
                                     +.++++.+.     ...+..+|+            ..+++++++||+ ..|+......++..+.+
T Consensus       115 ~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  194 (377)
T PRK11607        115 GLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVD  194 (377)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence                           122222111     011111221            147899999997 78998888877766644


Q ss_pred             cc--CceeEEEEecCCCcccHHHhhhcce
Q 018543          157 YS--ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       157 ~~--~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      ..  .+..+|++|++.+ ....+.+|+.+
T Consensus       195 l~~~~g~tii~vTHd~~-ea~~laDri~v  222 (377)
T PRK11607        195 ILERVGVTCVMVTHDQE-EAMTMAGRIAI  222 (377)
T ss_pred             HHHhcCCEEEEEcCCHH-HHHHhCCEEEE
Confidence            32  2456666666654 33456666543

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.68  E-value=2.7e-08  Score=88.16  Aligned_cols=159  Identities=15%  Similarity=0.172  Sum_probs=82.4

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC-ccccccccccccCce------
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-RNIDLELTTLSSANH------   94 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------   94 (354)
                      .+.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......... ......+..+.+...      
T Consensus        17 l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~   93 (271)
T PRK13638         17 LKGLNLDFSLSPV--TGLVGANGCGKSTLFMNLSG-LLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT   93 (271)
T ss_pred             ccceEEEEcCCCE--EEEECCCCCCHHHHHHHHcC-CCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccc
Confidence            3344444445544  99999999999999999998 5677778887777643200000 000000111111000      


Q ss_pred             -----eeeCCCCCCCcch---hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHH
Q 018543           95 -----VELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (354)
Q Consensus        95 -----i~~~~~~~~~~~~---~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~  148 (354)
                           +.+.....+....   ..+.+.++.+.     ...+..+|+            ..+++++++||+ ..|++....
T Consensus        94 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~  173 (271)
T PRK13638         94 DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT  173 (271)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence                 0000000000000   01222222211     111111221            147899999998 789999999


Q ss_pred             HHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          149 SLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       149 ~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus       174 ~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l  209 (271)
T PRK13638        174 QMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVL  209 (271)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            99999877543 345666665543 445566665443

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.68  E-value=5.6e-08  Score=84.38  Aligned_cols=54  Identities=13%  Similarity=0.267  Sum_probs=39.7

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++..+..+.+.+.+...+..+|+++++.+.+ .. .+|+..+
T Consensus       154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-~~-~d~~~~l  208 (236)
T cd03253         154 KNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTI-VN-ADKIIVL  208 (236)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-Hh-CCEEEEE
Confidence            57899999997 7899999999999997765555566666666544 33 5665444

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.68  E-value=6.9e-08  Score=85.27  Aligned_cols=55  Identities=13%  Similarity=0.154  Sum_probs=38.8

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|+++++.+ ....+.+|+.++
T Consensus       164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l  221 (265)
T PRK10575        164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVAL  221 (265)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            57899999998 78999999988888876532  455666666654 344555665443

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.68  E-value=5.7e-08  Score=89.17  Aligned_cols=139  Identities=16%  Similarity=0.257  Sum_probs=78.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh--------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY--------  108 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------  108 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++..+.  ......  ..  ......+.+.+++.......        
T Consensus        27 ~~l~G~nGsGKSTLl~~iaG-l~~p~~G~I~~~g~~~~--~~~~~~--~~--~~~~~~i~~v~q~~~l~~~~tv~enl~~   99 (352)
T PRK11144         27 TAIFGRSGAGKTSLINAISG-LTRPQKGRIVLNGRVLF--DAEKGI--CL--PPEKRRIGYVFQDARLFPHYKVRGNLRY   99 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcc--cccccc--cc--chhhCCEEEEcCCcccCCCCcHHHHHHh
Confidence            99999999999999999998 56777787877776543  100000  00  00011222322222221111        


Q ss_pred             --------HHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--c
Q 018543          109 --------VVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--S  160 (354)
Q Consensus       109 --------~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~  160 (354)
                              .+.++++.+.-     ..+..+|+            ..+++++++||+ ..|++.....+++.+.+...  +
T Consensus       100 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g  179 (352)
T PRK11144        100 GMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN  179 (352)
T ss_pred             hhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence                    12222222211     11111221            147899999997 78999999988888876532  3


Q ss_pred             eeEEEEecCCCcccHHHhhhcce
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      ..+|++|++.+ ....+.+|+.+
T Consensus       180 ~tii~vTHd~~-~~~~~~d~i~~  201 (352)
T PRK11144        180 IPILYVSHSLD-EILRLADRVVV  201 (352)
T ss_pred             CeEEEEecCHH-HHHHhCCEEEE
Confidence            56777777654 33455566543

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.68  E-value=1.2e-07  Score=81.51  Aligned_cols=137  Identities=21%  Similarity=0.268  Sum_probs=75.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc------------eeeeCCC---C
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN------------HVELSPS---D  101 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~---~  101 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++....  ....    .+..+.+..            .+.+...   .
T Consensus         9 ~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~--~~~~----~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~   81 (223)
T TIGR03771         9 LGLLGPNGAGKTTLLRAILG-LIPPAKGTVKVAGASPG--KGWR----HIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG   81 (223)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCccch--HhhC----cEEEecccccccCCCCccHHHHHHhccccccc
Confidence            89999999999999999998 55677777777765321  0000    011111100            0000000   0


Q ss_pred             -CC-C--cchhHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC
Q 018543          102 -AG-F--QDRYVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (354)
Q Consensus       102 -~~-~--~~~~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~  159 (354)
                       .. .  .....+.+.++.+.-.     .+..+++            ..+++++++||+ ..|+...+..+.+.+.+...
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~  161 (223)
T TIGR03771        82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG  161 (223)
T ss_pred             cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence             00 0  0011233334332211     1111121            257899999997 78999999999999977643


Q ss_pred             -ceeEEEEecCCCcccHHHhhhc
Q 018543          160 -SCRLILCCNSSSKVTEAIRSRC  181 (354)
Q Consensus       160 -~~~~Il~~~~~~~l~~~l~sR~  181 (354)
                       +..+|+++++.+ ....+.+|.
T Consensus       162 ~~~tvii~sH~~~-~~~~~~d~i  183 (223)
T TIGR03771       162 AGTAILMTTHDLA-QAMATCDRV  183 (223)
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEE
Confidence             455666666654 334444554

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.68  E-value=1.5e-07  Score=81.13  Aligned_cols=56  Identities=21%  Similarity=0.180  Sum_probs=40.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++..+..+.+.+.+... ...+|+++++.......+.+|+.++
T Consensus       160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l  217 (226)
T cd03234         160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL  217 (226)
T ss_pred             hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence            47899999998 78999999999999876533 4566666666544445566665444

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.67  E-value=5.8e-08  Score=83.66  Aligned_cols=53  Identities=21%  Similarity=0.369  Sum_probs=39.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++.....+.+.+.+...+..+|+++++.+.+ .. .+|+..
T Consensus       167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~-~d~i~~  220 (226)
T cd03248         167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTV-ER-ADQILV  220 (226)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH-Hh-CCEEEE
Confidence            57899999998 7899999999999997765556777777776543 32 444433

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.67  E-value=6.7e-08  Score=83.63  Aligned_cols=54  Identities=13%  Similarity=0.246  Sum_probs=39.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|+++++... .+.+.+|+.+
T Consensus       147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d~i~~  203 (232)
T cd03300         147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE-ALTMSDRIAV  203 (232)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEE
Confidence            57899999998 78999999999999977543  4566666666543 3555566543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.67  E-value=7.9e-08  Score=82.11  Aligned_cols=55  Identities=18%  Similarity=0.269  Sum_probs=38.6

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|+++++.+. ...+.+|+.++
T Consensus       148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l  205 (214)
T cd03297         148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE-AEYLADRIVVM  205 (214)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH-HHHhcCEEEEE
Confidence            57899999997 88999999999998876532  3556666666543 34555554433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.67  E-value=7.5e-08  Score=88.49  Aligned_cols=139  Identities=17%  Similarity=0.222  Sum_probs=77.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch---------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---------  107 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------  107 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++..+.......    ...  .....+.+.+++......         
T Consensus        26 ~~l~G~nGsGKSTLl~~iaG-l~~p~~G~I~~~g~~i~~~~~~~----~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~   98 (354)
T TIGR02142        26 TAIFGRSGSGKTTLIRLIAG-LTRPDEGEIVLNGRTLFDSRKGI----FLP--PEKRRIGYVFQEARLFPHLSVRGNLRY   98 (354)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECccCcccc----ccc--hhhCCeEEEecCCccCCCCcHHHHHHH
Confidence            89999999999999999998 56777788888776543100000    000  000011121111111110         


Q ss_pred             -----------hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhcc
Q 018543          108 -----------YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (354)
Q Consensus       108 -----------~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~  158 (354)
                                 ..+.++++.+.     ...+..+++            ..+++++++||+ ..|++.....+++.|.+..
T Consensus        99 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~  178 (354)
T TIGR02142        99 GMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLH  178 (354)
T ss_pred             HhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence                       11223332221     111111221            147899999997 8899999999999887653


Q ss_pred             C--ceeEEEEecCCCcccHHHhhhcce
Q 018543          159 A--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       159 ~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .  +..+|++|++.+. ...+.+|+.+
T Consensus       179 ~~~g~tiiivtH~~~~-~~~~~d~i~~  204 (354)
T TIGR02142       179 AEFGIPILYVSHSLQE-VLRLADRVVV  204 (354)
T ss_pred             HhcCCEEEEEecCHHH-HHHhCCEEEE
Confidence            3  4557777766543 3455566543

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.67  E-value=1.1e-07  Score=87.21  Aligned_cols=148  Identities=13%  Similarity=0.220  Sum_probs=80.6

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------eeeeC
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN----------HVELS   98 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~   98 (354)
                      +..|..  +.|.||+|+||||+++++++ +..++.+.+.+++.......+..+   .+..+.+..          .+.+.
T Consensus        25 i~~Ge~--~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~i~g~~i~~~~~~~r---~i~~v~Q~~~l~p~~tv~eni~~~   98 (353)
T PRK10851         25 IPSGQM--VALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLHARDR---KVGFVFQHYALFRHMTVFDNIAFG   98 (353)
T ss_pred             EcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHC---CEEEEecCcccCCCCcHHHHHHhh
Confidence            344544  99999999999999999998 667888888888765431000000   111111110          01110


Q ss_pred             CCC----CCCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHH
Q 018543           99 PSD----AGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT  153 (354)
Q Consensus        99 ~~~----~~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~  153 (354)
                      ...    .+...   ...+.++++.+.     ...+..+|+            ..+++++++||+ ..|+......+++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~  178 (353)
T PRK10851         99 LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRW  178 (353)
T ss_pred             hhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence            000    00000   012223333221     111111221            157899999997 78999999999998


Q ss_pred             HhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          154 MEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       154 le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +.+...  +..+|++|++.+ ....+.+|+.+
T Consensus       179 L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~v  209 (353)
T PRK10851        179 LRQLHEELKFTSVFVTHDQE-EAMEVADRVVV  209 (353)
T ss_pred             HHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            876543  355666666653 33445566543

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.67  E-value=8.3e-08  Score=84.14  Aligned_cols=150  Identities=18%  Similarity=0.197  Sum_probs=78.9

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc--------
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN--------   93 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------   93 (354)
                      .+.+.-.+..|..  +.|.||+|+||||+++.+++ +..+..+.+.+++....  ....    .+..+.+..        
T Consensus        28 l~~isl~i~~Ge~--~~I~G~NGsGKSTLlk~l~G-l~~p~~G~i~~~g~~~~--~~~~----~i~~v~q~~~l~~~~tv   98 (257)
T PRK11247         28 LNQLDLHIPAGQF--VAVVGRSGCGKSTLLRLLAG-LETPSAGELLAGTAPLA--EARE----DTRLMFQDARLLPWKKV   98 (257)
T ss_pred             eeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEHH--HhhC----ceEEEecCccCCCCCcH
Confidence            3334334444544  99999999999999999998 55666676666543221  0000    000000000        


Q ss_pred             --eeeeCCCCCCCcchhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHH
Q 018543           94 --HVELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRT  153 (354)
Q Consensus        94 --~i~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~  153 (354)
                        .+.+..   .......+.+.++.+.-     ..+..+|+            ..+++++++||+ ..|++.....+.+.
T Consensus        99 ~enl~~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~  175 (257)
T PRK11247         99 IDNVGLGL---KGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDL  175 (257)
T ss_pred             HHHHHhcc---cchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence              000000   00001112233322211     11111221            147899999998 78999999999888


Q ss_pred             Hhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543          154 MEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       154 le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +.+..  .+..+|+++++.+ ....+.+|+.++
T Consensus       176 L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l  207 (257)
T PRK11247        176 IESLWQQHGFTVLLVTHDVS-EAVAMADRVLLI  207 (257)
T ss_pred             HHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            87642  2455666666654 334555665433

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.67  E-value=8.5e-08  Score=88.10  Aligned_cols=170  Identities=23%  Similarity=0.404  Sum_probs=106.1

Q ss_pred             HHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------cee
Q 018543           26 KKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHV   95 (354)
Q Consensus        26 ~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i   95 (354)
                      .-.+..|.+  --|.|.+|.||||+.+.+.. ++.|+.+.+.++++...+..|.......+..+-++          +.+
T Consensus        24 ~l~v~~GeI--HaLLGENGAGKSTLm~iL~G-~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENi  100 (501)
T COG3845          24 SLSVKKGEI--HALLGENGAGKSTLMKILFG-LYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENI  100 (501)
T ss_pred             eeeecCCcE--EEEeccCCCCHHHHHHHHhC-cccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhh
Confidence            334556666  45889999999999999998 78999999999999888767664322222111111          111


Q ss_pred             eeC--CCCCCCcchhHHHHHHHHHHhcCCCCCCC---------------------CCCceEEEEeCC-CcCCHHHHHHHH
Q 018543           96 ELS--PSDAGFQDRYVVQEVIKEMAKNRPIDTKG---------------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (354)
Q Consensus        96 ~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------------------~~~~~viiiDE~-d~l~~~~~~~Ll  151 (354)
                      -+-  +......+....++.++++.....+....                     ..+.+++|+||+ --|++...+.|+
T Consensus       101 iLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf  180 (501)
T COG3845         101 ILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF  180 (501)
T ss_pred             hhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence            111  11111223334555666665555442211                     146789999998 568999999999


Q ss_pred             HHHhhcc-CceeEEEEecCCCcccHHHhhhcceee-------ec---CCCHHHHHHHHH
Q 018543          152 RTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNIR-------IN---SPTEEQIVKVLE  199 (354)
Q Consensus       152 ~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i~-------~~---~~~~~~~~~~L~  199 (354)
                      .++.... ....+|++|+....+ ..+.+|+.+++       +.   ..+.+++.+.+-
T Consensus       181 ~~l~~l~~~G~tIi~ITHKL~Ev-~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMv  238 (501)
T COG3845         181 EILRRLAAEGKTIIFITHKLKEV-MAIADRVTVLRRGKVVGTVDPVAETTEEELAELMV  238 (501)
T ss_pred             HHHHHHHHCCCEEEEEeccHHHH-HHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhc
Confidence            9997764 445677777665443 45667775444       22   335666666553

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.66  E-value=8.7e-08  Score=84.72  Aligned_cols=158  Identities=15%  Similarity=0.200  Sum_probs=82.6

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCce-------
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH-------   94 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   94 (354)
                      .+.+.-.++.|..  +.|.||+|+||||+++++++ +..+..+.+.+++............ ..+..+.+...       
T Consensus        29 l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~-~~i~~v~q~~~~~~~~~~  104 (267)
T PRK15112         29 VKPLSFTLREGQT--LAIIGENGSGKSTLAKMLAG-MIEPTSGELLIDDHPLHFGDYSYRS-QRIRMIFQDPSTSLNPRQ  104 (267)
T ss_pred             eeeeeEEecCCCE--EEEEcCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCchhhHh-ccEEEEecCchhhcCcch
Confidence            3444444555554  99999999999999999998 5677778777776543200000000 00111111000       


Q ss_pred             -----eeeCCC-CCCCcc---hhHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543           95 -----VELSPS-DAGFQD---RYVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (354)
Q Consensus        95 -----i~~~~~-~~~~~~---~~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (354)
                           +.+... ......   ...+.+.++.+.-      ..+..+|+            ..+++++++||+ ..|++..
T Consensus       105 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~  184 (267)
T PRK15112        105 RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM  184 (267)
T ss_pred             hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence                 000000 000000   0112223322211      01111221            147899999997 7899999


Q ss_pred             HHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       147 ~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ...+.+.+.+...  +..+|+++++.+ ....+.+|+.++
T Consensus       185 ~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l  223 (267)
T PRK15112        185 RSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVM  223 (267)
T ss_pred             HHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence            9999998877532  455666666654 344555665443

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.66  E-value=6.5e-08  Score=86.56  Aligned_cols=54  Identities=19%  Similarity=0.267  Sum_probs=37.1

Q ss_pred             cCCCCCCCcccC----HHHHHHHHHHHhc---C-CCCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543            7 YRPKTLDQVIVH----QDIAQNLKKLVTE---Q-DCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus         7 yrP~~~~~~~g~----~~~~~~l~~~l~~---~-~~~~~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      +...+|+++...    ..+......++..   + ...+++|+||+|+|||+++.++++++..
T Consensus       121 ~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~  182 (306)
T PRK08939        121 LLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK  182 (306)
T ss_pred             HhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            445678877643    2333444555553   2 2335999999999999999999998853

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.66  E-value=7.6e-08  Score=85.19  Aligned_cols=54  Identities=6%  Similarity=0.065  Sum_probs=38.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|+++++.+. ...+.+|+.+
T Consensus       160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~-~~~~~d~v~~  216 (269)
T PRK11831        160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPE-VLSIADHAYI  216 (269)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhhCEEEE
Confidence            47899999997 88999999999999877532  4566666666443 3444555543

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.66  E-value=1.1e-07  Score=80.08  Aligned_cols=136  Identities=20%  Similarity=0.272  Sum_probs=75.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc-----cccCceeeeCCCCCCCcchhHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT-----LSSANHVELSPSDAGFQDRYVVQ  111 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~i~  111 (354)
                      +-|.|++|+||||+.+.+++ ++.|+.+.+.+++....+        ++...     .+..+.+.+...-.|... ..++
T Consensus        56 vGiiG~NGaGKSTLlkliaG-i~~Pt~G~v~v~G~v~~l--------i~lg~Gf~pelTGreNi~l~~~~~G~~~-~ei~  125 (249)
T COG1134          56 VGIIGHNGAGKSTLLKLIAG-IYKPTSGKVKVTGKVAPL--------IELGAGFDPELTGRENIYLRGLILGLTR-KEID  125 (249)
T ss_pred             EEEECCCCCcHHHHHHHHhC-ccCCCCceEEEcceEehh--------hhcccCCCcccchHHHHHHHHHHhCccH-HHHH
Confidence            88999999999999999998 788998888887764420        01110     111111222211112211 1122


Q ss_pred             HHHHH---HHhcCC-----C-------------CCCCCCCceEEEEeCC-CcCCHHHHHHHHHHHhhc-cCceeEEEEec
Q 018543          112 EVIKE---MAKNRP-----I-------------DTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCN  168 (354)
Q Consensus       112 ~~~~~---~~~~~~-----~-------------~~~~~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~  168 (354)
                      +..++   |++...     +             ..+..-++.|++|||+ ..-++..++.-.+.|.+. ..+..+|++++
T Consensus       126 ~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSH  205 (249)
T COG1134         126 EKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSH  205 (249)
T ss_pred             HHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence            22222   222211     1             1112357899999997 555777666666666555 44555666555


Q ss_pred             CCCcccHHHhhhcce
Q 018543          169 SSSKVTEAIRSRCLN  183 (354)
Q Consensus       169 ~~~~l~~~l~sR~~~  183 (354)
                      +. .....+++|+..
T Consensus       206 d~-~~I~~~Cd~~i~  219 (249)
T COG1134         206 DL-GAIKQYCDRAIW  219 (249)
T ss_pred             CH-HHHHHhcCeeEE
Confidence            54 444566666643

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.66  E-value=4.4e-08  Score=85.12  Aligned_cols=53  Identities=17%  Similarity=0.239  Sum_probs=40.0

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++.....+.+.+.+...+..+|+++++.+.+ + ..+|+.+
T Consensus       156 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~-~-~~d~v~~  209 (238)
T cd03249         156 RNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTI-R-NADLIAV  209 (238)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-h-hCCEEEE
Confidence            47899999997 7899999999999997765556677777776544 3 4566543

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=98.65  E-value=3.1e-06  Score=74.88  Aligned_cols=108  Identities=16%  Similarity=0.163  Sum_probs=75.2

Q ss_pred             ceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------CceeEEEEecCCC-------cccHHHhhhcce--eeecCCC
Q 018543          131 FKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSPT  190 (354)
Q Consensus       131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~~l~sR~~~--i~~~~~~  190 (354)
                      ..-+++||+..|++..|..|++.+.+..           -++++|++|..+-       ++-+.+--|..+  +++||+-
T Consensus       294 gGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLR  373 (511)
T COG3283         294 GGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLR  373 (511)
T ss_pred             CCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccc
Confidence            3578999999999999999999996532           3466777665542       455566666655  4455543


Q ss_pred             H--HH----HHHHHHHHHHHcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHHhc
Q 018543          191 E--EQ----IVKVLEFIAKKEGL---QLPSGFATRLAEK-SNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       191 ~--~~----~~~~L~~~~~~~~~---~i~~~~l~~i~~~-s~gd~R~ai~~L~~~~~~  238 (354)
                      +  ++    ....+++++++.|+   .++++.+..+..+ ..||+|+.-|.+=.++..
T Consensus       374 er~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~  431 (511)
T COG3283         374 ERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTL  431 (511)
T ss_pred             cCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence            2  12    33456677777776   4678888888774 689999999987766543

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.65  E-value=1e-07  Score=83.25  Aligned_cols=55  Identities=15%  Similarity=0.205  Sum_probs=39.5

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+......+|+++++.+ ....+.+|+.++
T Consensus       161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~-~~~~~~d~i~~l  216 (247)
T TIGR00972       161 VEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQ-QAARISDRTAFF  216 (247)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHH-HHHHhCCEEEEE
Confidence            47899999998 78999999999999977655555666666554 444555665443

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.1e-07  Score=83.04  Aligned_cols=106  Identities=20%  Similarity=0.336  Sum_probs=73.2

Q ss_pred             CceEEEEeCCCcCC------------HHHHHHHHHHHhhcc--------CceeEEEEec------CCCcccHHHhhhcc-
Q 018543          130 GFKVLVLNEVDKLS------------REAQHSLRRTMEKYS--------ASCRLILCCN------SSSKVTEAIRSRCL-  182 (354)
Q Consensus       130 ~~~viiiDE~d~l~------------~~~~~~Ll~~le~~~--------~~~~~Il~~~------~~~~l~~~l~sR~~-  182 (354)
                      +..||||||+|.+.            ...|..|+.++|...        .+-.+.|++.      .|+.++|.++-|+- 
T Consensus       250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI  329 (444)
T COG1220         250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI  329 (444)
T ss_pred             hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence            56799999999772            235778888887532        2233455543      46789999999985 


Q ss_pred             eeeecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHH
Q 018543          183 NIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETC  235 (354)
Q Consensus       183 ~i~~~~~~~~~~~~~L~~-----------~~~~~~~--~i~~~~l~~i~~~s--------~gd~R~ai~~L~~~  235 (354)
                      .+++.+++.++..++|..           .+.-+|+  .+++++++.||+.+        +=..|+.-..|+.+
T Consensus       330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl  403 (444)
T COG1220         330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL  403 (444)
T ss_pred             EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence            599999999999999843           1223555  56799999888853        11355655555543

>PLN03210 Resistant to P

Probab=98.64  E-value=9.3e-07  Score=93.47  Aligned_cols=197  Identities=14%  Similarity=0.207  Sum_probs=101.7

Q ss_pred             CCCCCCcccCHHHHHHHHHHHhcC--CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccc
Q 018543            9 PKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (354)
Q Consensus         9 P~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
                      +..+++++|.+...+.+..++.-+  ....+.++||+|+||||+|+++++.+...-.+.+.++...+.   .      ..
T Consensus       180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~---~------~~  250 (1153)
T PLN03210        180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS---K------SM  250 (1153)
T ss_pred             CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc---c------ch
Confidence            346889999988888888887532  222389999999999999999988764332222211110000   0      00


Q ss_pred             cccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCC--------CCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc
Q 018543           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDT--------KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (354)
Q Consensus        87 ~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~  158 (354)
                      ....     ...+.+..... ...++++..+........        ....++-+||+|+++.  ....+.|....+...
T Consensus       251 ~~~~-----~~~~~~~~~~~-~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~  322 (1153)
T PLN03210        251 EIYS-----SANPDDYNMKL-HLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFG  322 (1153)
T ss_pred             hhcc-----cccccccchhH-HHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCC
Confidence            0000     00000000000 001111111111110000        0123456889999974  344455554333334


Q ss_pred             CceeEEEEecCCCcccHHHhhh-cceeeecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCH
Q 018543          159 ASCRLILCCNSSSKVTEAIRSR-CLNIRINSPTEEQIVKVLEFIAKKEGLQLP--SGFATRLAEKSNRSL  225 (354)
Q Consensus       159 ~~~~~Il~~~~~~~l~~~l~sR-~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~--~~~l~~i~~~s~gd~  225 (354)
                      .+.++|++|++..-+ ..  .. ..++.++.++.++....+.+.+-+....-+  .+....+++.++|-+
T Consensus       323 ~GsrIIiTTrd~~vl-~~--~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP  389 (1153)
T PLN03210        323 SGSRIIVITKDKHFL-RA--HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP  389 (1153)
T ss_pred             CCcEEEEEeCcHHHH-Hh--cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc
Confidence            456777777764321 11  11 246888899999888888876643322211  234566777887754

syringae 6; Provisional

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.64  E-value=5.5e-08  Score=95.89  Aligned_cols=124  Identities=17%  Similarity=0.266  Sum_probs=75.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC------------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF------------  104 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------  104 (354)
                      +.+.||+|+||||+++.+++ ++ +..+.+.+++.+..          ++....-.+.+.+.+++.-.            
T Consensus       379 vaIvG~SGsGKSTL~~lL~g-~~-p~~G~I~i~g~~i~----------~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g  446 (588)
T PRK11174        379 IALVGPSGAGKTSLLNALLG-FL-PYQGSLKINGIELR----------ELDPESWRKHLSWVGQNPQLPHGTLRDNVLLG  446 (588)
T ss_pred             EEEECCCCCCHHHHHHHHhc-CC-CCCcEEEECCEecc----------cCCHHHHHhheEEecCCCcCCCcCHHHHhhcC
Confidence            99999999999999999998 45 77888888876543          11100001122222222111            


Q ss_pred             ---cchhHHHHHHHHH------HhcC----------CCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          105 ---QDRYVVQEVIKEM------AKNR----------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       105 ---~~~~~i~~~~~~~------~~~~----------~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                         .....+.+.++..      ...+          ...+|+            -.+++|+++||+ ..++.+....+.+
T Consensus       447 ~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~  526 (588)
T PRK11174        447 NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ  526 (588)
T ss_pred             CCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence               1111222222221      1110          001221            147899999998 7899999888888


Q ss_pred             HHhhccCceeEEEEecCCCc
Q 018543          153 TMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       153 ~le~~~~~~~~Il~~~~~~~  172 (354)
                      .+.+..++..+|++|++.+.
T Consensus       527 ~l~~~~~~~TvIiItHrl~~  546 (588)
T PRK11174        527 ALNAASRRQTTLMVTHQLED  546 (588)
T ss_pred             HHHHHhCCCEEEEEecChHH
Confidence            88877666778888888743

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.64  E-value=9.1e-08  Score=84.20  Aligned_cols=55  Identities=7%  Similarity=0.088  Sum_probs=38.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+++.+.+... +..+|+++++ ....+.+.+|+.++
T Consensus       160 ~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~-~~~i~~~~d~i~~l  216 (264)
T PRK13546        160 VNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN-LGQVRQFCTKIAWI  216 (264)
T ss_pred             hCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC-HHHHHHHcCEEEEE
Confidence            47899999998 68999999899998876543 3445555555 44445566666443

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.64  E-value=1.6e-07  Score=81.79  Aligned_cols=55  Identities=11%  Similarity=0.223  Sum_probs=40.5

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++..+..+.+.+.+......+|+++++.+ ..+.+.+|+.++
T Consensus       160 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~~l  215 (242)
T TIGR03411       160 QDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDME-FVRSIADKVTVL  215 (242)
T ss_pred             cCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence            47899999998 78999999999999987655555666666544 445566666443

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.64  E-value=8e-08  Score=83.44  Aligned_cols=52  Identities=23%  Similarity=0.404  Sum_probs=39.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .+++++++||+ ..|++.....+.+.+.+...+..+|+++++.+.+ . ..+|+.
T Consensus       155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-~-~~d~v~  207 (237)
T cd03252         155 HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV-K-NADRII  207 (237)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-H-hCCEEE
Confidence            47899999998 7899999999999997765556677777776543 3 245543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.64  E-value=1.3e-07  Score=77.71  Aligned_cols=149  Identities=15%  Similarity=0.275  Sum_probs=83.7

Q ss_pred             CCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCC-----cccccccccccccCCCcccccc
Q 018543           11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA-----EKVKVENKTWKIDAGSRNIDLE   85 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~   85 (354)
                      .++-.+|..++.+.+.--+..+..  .-|.||+||||||+.|++-+ +....+     +.+.+++.++.  .+.    ++
T Consensus        12 ~l~~yYg~~~aL~~i~l~i~~~~V--TAlIGPSGcGKST~LR~lNR-mndl~~~~r~~G~v~~~g~ni~--~~~----~d   82 (253)
T COG1117          12 DLNLYYGDKHALKDINLDIPKNKV--TALIGPSGCGKSTLLRCLNR-MNDLIPGARVEGEVLLDGKNIY--DPK----VD   82 (253)
T ss_pred             ceeEEECchhhhccCceeccCCce--EEEECCCCcCHHHHHHHHHh-hcccCcCceEEEEEEECCeecc--CCC----CC
Confidence            455567888887777766665555  67999999999999999977 444332     44555555443  111    01


Q ss_pred             ccccccCceeee-----CCCCC-------------CCcchhHHHHHHHHH-------------HhcCCCCCCCC------
Q 018543           86 LTTLSSANHVEL-----SPSDA-------------GFQDRYVVQEVIKEM-------------AKNRPIDTKGK------  128 (354)
Q Consensus        86 ~~~~~~~~~i~~-----~~~~~-------------~~~~~~~i~~~~~~~-------------~~~~~~~~~~~------  128 (354)
                      ...+.  ..+.+     +|...             +..+ ..+.++++..             ....+..+++.      
T Consensus        83 ~~~lR--r~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLc  159 (253)
T COG1117          83 VVELR--RRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLC  159 (253)
T ss_pred             HHHHH--HHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHH
Confidence            11100  00111     11111             1111 1122222211             11122233322      


Q ss_pred             ------CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 ------RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ------~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                            -++.|+++||+ ..|++-+...+-.++.+......+|++|++..
T Consensus       160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmq  209 (253)
T COG1117         160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQ  209 (253)
T ss_pred             HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHH
Confidence                  36899999997 77888777777777766667777888887764

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.63  E-value=6.2e-08  Score=95.44  Aligned_cols=142  Identities=15%  Similarity=0.220  Sum_probs=80.7

Q ss_pred             HHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCce---------
Q 018543           24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH---------   94 (354)
Q Consensus        24 ~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   94 (354)
                      .+.-.++.|+.  +.+.||+|+||||+++.+++ ++.+..+.+.+++.+...-...... -.+..+.+..+         
T Consensus       361 ~i~l~i~~G~~--~aIvG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~~~-~~i~~v~Q~~~lf~~Ti~~N  436 (582)
T PRK11176        361 NINFKIPAGKT--VALVGRSGSGKSTIANLLTR-FYDIDEGEILLDGHDLRDYTLASLR-NQVALVSQNVHLFNDTIANN  436 (582)
T ss_pred             CceEEeCCCCE--EEEECCCCCCHHHHHHHHHh-ccCCCCceEEECCEEhhhcCHHHHH-hhceEEccCceeecchHHHH
Confidence            33333344443  99999999999999999998 7788888888888654310000000 01111111111         


Q ss_pred             eeeCCCCCCCcchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC-CcCCHH
Q 018543           95 VELSPSDAGFQDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSRE  145 (354)
Q Consensus        95 i~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~~~  145 (354)
                      +.+...  ...+...+.+.++..     ....|.           .+++            -.+++++++||+ ..|+++
T Consensus       437 i~~~~~--~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~  514 (582)
T PRK11176        437 IAYART--EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE  514 (582)
T ss_pred             HhcCCC--CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence            111000  001112233333221     111111           1121            147899999998 789999


Q ss_pred             HHHHHHHHHhhccCceeEEEEecCCC
Q 018543          146 AQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       146 ~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      ....+.+.+.+...+..+|++|++++
T Consensus       515 t~~~i~~~l~~~~~~~tvI~VtHr~~  540 (582)
T PRK11176        515 SERAIQAALDELQKNRTSLVIAHRLS  540 (582)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecchH
Confidence            98889998877666678888888863

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.63  E-value=1.2e-07  Score=83.43  Aligned_cols=56  Identities=14%  Similarity=0.230  Sum_probs=40.1

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcceee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR  185 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i~  185 (354)
                      .+++++++||+ ..|+......+.+.+.+... +..+|+++++. ...+.+.+|+.++.
T Consensus       169 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~  226 (257)
T PRK10619        169 MEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLH  226 (257)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEE
Confidence            47899999997 78999999999998877543 34555555554 44556667765443

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.63  E-value=5.9e-08  Score=81.27  Aligned_cols=43  Identities=14%  Similarity=0.244  Sum_probs=33.9

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCC
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~  171 (354)
                      .+++++++||+ ..|++..+..+.+.+.+... +..+|+++++.+
T Consensus       144 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~  188 (190)
T TIGR01166       144 MRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD  188 (190)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence            57899999997 88999999999999876533 456777777654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.63  E-value=9.6e-08  Score=83.74  Aligned_cols=55  Identities=15%  Similarity=0.214  Sum_probs=39.4

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|+++++.+. ...+.+|+.++
T Consensus       163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l  220 (252)
T TIGR03005       163 MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF-AREFADRVCFF  220 (252)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCEEEEE
Confidence            47899999998 78999999999998876532  4566777666543 34555665443

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=2.1e-06  Score=82.82  Aligned_cols=150  Identities=21%  Similarity=0.304  Sum_probs=90.8

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK  115 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~  115 (354)
                      .+|++|+|||||||+++++|.++--+   ...++|..+.                        .+..+. ........+.
T Consensus       433 ~vLLhG~~g~GK~t~V~~vas~lg~h---~~evdc~el~------------------------~~s~~~-~etkl~~~f~  484 (953)
T KOG0736|consen  433 SVLLHGPPGSGKTTVVRAVASELGLH---LLEVDCYELV------------------------AESASH-TETKLQAIFS  484 (953)
T ss_pred             EEEEeCCCCCChHHHHHHHHHHhCCc---eEeccHHHHh------------------------hcccch-hHHHHHHHHH
Confidence            39999999999999999999987211   1222222111                        111111 1122223332


Q ss_pred             HHHhcCCCCCCCCCCceEEEEeCCCcCC--------HHHHHHHHHHHh--hc---cCceeEEEEecCCCcccHHHhhhcc
Q 018543          116 EMAKNRPIDTKGKRGFKVLVLNEVDKLS--------REAQHSLRRTME--KY---SASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       116 ~~~~~~~~~~~~~~~~~viiiDE~d~l~--------~~~~~~Ll~~le--~~---~~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      ....         ..+.||++-..|-+.        ...+..+...+.  ..   ..++.+|.+++..+.+++.+++-+.
T Consensus       485 ~a~~---------~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~  555 (953)
T KOG0736|consen  485 RARR---------CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFL  555 (953)
T ss_pred             HHhh---------cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhh
Confidence            2222         244677777766552        223344444443  12   2456677788888999999999874


Q ss_pred             -eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 018543          183 -NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR  223 (354)
Q Consensus       183 -~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~g  223 (354)
                       .|.++.+++++..++|+.......+. ++..+..++..+.|
T Consensus       556 ~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~~a~~t~g  596 (953)
T KOG0736|consen  556 HEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQLARKTSG  596 (953)
T ss_pred             hhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHHHHHhcCC
Confidence             69999999999999999888755432 12334555555444

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.62  E-value=1e-07  Score=83.09  Aligned_cols=53  Identities=11%  Similarity=0.159  Sum_probs=37.7

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHH-hhhcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCL  182 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l-~sR~~  182 (354)
                      .+++++++||+ ..|+......+.+.+.+... +..+|+++++.+.+ ..+ .+|+.
T Consensus       161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~-~~~~~d~i~  216 (243)
T TIGR01978       161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLL-NYIKPDYVH  216 (243)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHH-HhhcCCeEE
Confidence            47899999998 78999999999999977643 35566666665433 333 45543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.62  E-value=1.4e-07  Score=81.41  Aligned_cols=55  Identities=13%  Similarity=0.143  Sum_probs=38.7

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|+++++.+ ....+.+|+.++
T Consensus       142 ~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  199 (230)
T TIGR02770       142 LEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVM  199 (230)
T ss_pred             cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            47899999998 78999999999888876543  345666665544 445556665443

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=8.7e-08  Score=85.38  Aligned_cols=54  Identities=13%  Similarity=0.248  Sum_probs=40.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+...+..+.+.+.+...  +..+|++|++.+.+ . +.+|+.++
T Consensus       160 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~-~~d~i~~l  216 (282)
T PRK13640        160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-N-MADQVLVL  216 (282)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-H-hCCEEEEE
Confidence            57899999997 88999999999999876542  45677777776654 3 46676444

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=1.2e-07  Score=84.67  Aligned_cols=160  Identities=17%  Similarity=0.309  Sum_probs=84.3

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC-CCc--cccccccccccC------
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSR--NIDLELTTLSSA------   92 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~------   92 (354)
                      .+.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++....... +..  .....+..+.+.      
T Consensus        23 l~~vsl~i~~Ge~--~~iiG~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~   99 (287)
T PRK13641         23 LDNISFELEEGSF--VALVGHTGSGKSTLMQHFNA-LLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF   99 (287)
T ss_pred             eeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence            3444444555554  89999999999999999998 66788888888876542000 000  000000000000      


Q ss_pred             -----ceeeeCCCCCCCcc---hhHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHH
Q 018543           93 -----NHVELSPSDAGFQD---RYVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSRE  145 (354)
Q Consensus        93 -----~~i~~~~~~~~~~~---~~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~  145 (354)
                           +.+.+.....+...   ...+.+.++.+.-      ..+..+|+            ..+++++++||+ ..|++.
T Consensus       100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~  179 (287)
T PRK13641        100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE  179 (287)
T ss_pred             cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence                 00000000000000   0012222222211      11111221            147899999997 889999


Q ss_pred             HHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcceee
Q 018543          146 AQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR  185 (354)
Q Consensus       146 ~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i~  185 (354)
                      .+..+.+.+.+... +..+|++|++ ......+.+|+.+++
T Consensus       180 ~~~~l~~~l~~l~~~g~tvlivsH~-~~~~~~~~d~v~~l~  219 (287)
T PRK13641        180 GRKEMMQLFKDYQKAGHTVILVTHN-MDDVAEYADDVLVLE  219 (287)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEE
Confidence            99999999977643 3445555554 444556677765443

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.61  E-value=1.2e-07  Score=81.29  Aligned_cols=54  Identities=13%  Similarity=0.349  Sum_probs=39.4

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+...+..+.+.+.+..  .+..+|+++++.+ + ..+.+|+.++
T Consensus       158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~-~~~~d~v~~l  214 (220)
T TIGR02982       158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-I-LDVADRIVHM  214 (220)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-H-HhhCCEEEEE
Confidence            57899999997 7899999999999987654  2466777777764 3 3455555443

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=1.4e-07  Score=82.80  Aligned_cols=55  Identities=15%  Similarity=0.233  Sum_probs=39.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|+++++.+ ....+.+|+.++
T Consensus       170 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l  227 (255)
T PRK11300        170 TQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVV  227 (255)
T ss_pred             cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            57899999997 88999999999999976533  455666666544 444555665443

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.61  E-value=1.2e-07  Score=81.71  Aligned_cols=51  Identities=20%  Similarity=0.311  Sum_probs=36.4

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhh
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSR  180 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR  180 (354)
                      .+++++++||+ ..|+......+.+.+.+... +..+|+++++ ......+.+|
T Consensus       166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~-~~~~~~~~d~  218 (224)
T TIGR02324       166 ADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD-EEVRELVADR  218 (224)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhcce
Confidence            47899999997 88999999999999977543 4456666665 4433444444

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.61  E-value=1.6e-07  Score=86.55  Aligned_cols=54  Identities=15%  Similarity=0.198  Sum_probs=38.9

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++|+++||+ ..|++.....+.+.|.+...  +..+|++|++.+. ...+.+|+.+
T Consensus       181 ~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e-~~~l~DrI~v  237 (382)
T TIGR03415       181 MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE-ALKIGNRIAI  237 (382)
T ss_pred             cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            57899999997 88999999888888866432  4567777766543 3456666643

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.61  E-value=8.3e-08  Score=92.79  Aligned_cols=147  Identities=12%  Similarity=0.188  Sum_probs=79.6

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  102 (354)
                      +.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..+.  .....   ..    ....+.+.+++.
T Consensus        28 ~~vsl~i~~Ge~--~~liG~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~---~~----~~~~i~~v~q~~   95 (510)
T PRK15439         28 KGIDFTLHAGEV--HALLGGNGAGKSTLMKIIAG-IVPPDSGTLEIGGNPCA--RLTPA---KA----HQLGIYLVPQEP   95 (510)
T ss_pred             eeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECC--CCCHH---HH----HhCCEEEEeccC
Confidence            334434445544  89999999999999999998 56677787777765432  00000   00    000011111111


Q ss_pred             CCcc------------------hhHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543          103 GFQD------------------RYVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (354)
Q Consensus       103 ~~~~------------------~~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (354)
                      ....                  ...+.+.++.+.-.     ....+|+            ..+++++++||+ ..|++..
T Consensus        96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~  175 (510)
T PRK15439         96 LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAE  175 (510)
T ss_pred             ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence            1000                  01122223222110     0001121            147899999998 8899999


Q ss_pred             HHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcc
Q 018543          147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       147 ~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      ...+.+.|.+... +..+|+++++.+ ....+.+|+.
T Consensus       176 ~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~  211 (510)
T PRK15439        176 TERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRIS  211 (510)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEE
Confidence            9999998876543 344555555543 3445666654

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.60  E-value=1.1e-07  Score=86.46  Aligned_cols=55  Identities=11%  Similarity=0.226  Sum_probs=39.4

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+++.+.+...  +..+|++|++.+ ....+.+|+.++
T Consensus       117 ~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~-e~~~~~d~i~vl  174 (325)
T TIGR01187       117 FKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE-EAMTMSDRIAIM  174 (325)
T ss_pred             hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            47899999997 88999999999988876532  456777776654 334556665443

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.60  E-value=7.2e-08  Score=94.78  Aligned_cols=131  Identities=15%  Similarity=0.275  Sum_probs=75.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccCceee-------eCCCCCCCcchh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSANHVE-------LSPSDAGFQDRY  108 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~-------~~~~~~~~~~~~  108 (354)
                      +.+.||+|+||||+++.+++ ++.+..+.+.+++.+..  .-.... .-.+..+.+..++-       +.....+..+..
T Consensus       361 v~IvG~sGsGKSTLl~lL~g-l~~~~~G~I~i~g~~i~--~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~  437 (571)
T TIGR02203       361 VALVGRSGSGKSTLVNLIPR-FYEPDSGQILLDGHDLA--DYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRA  437 (571)
T ss_pred             EEEECCCCCCHHHHHHHHHh-ccCCCCCeEEECCEeHH--hcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHH
Confidence            99999999999999999998 77888888888876543  000000 00011111111110       000000011111


Q ss_pred             HHHHHHHHH-----HhcCC-----------CCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC
Q 018543          109 VVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (354)
Q Consensus       109 ~i~~~~~~~-----~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~  159 (354)
                      .+.+.++.+     ....|           ..+|+            -.+++|+++||+ ..|++.....+.+.+.+..+
T Consensus       438 ~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~  517 (571)
T TIGR02203       438 EIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ  517 (571)
T ss_pred             HHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC
Confidence            233322221     11111           01221            147899999998 78999999999999987766


Q ss_pred             ceeEEEEecCC
Q 018543          160 SCRLILCCNSS  170 (354)
Q Consensus       160 ~~~~Il~~~~~  170 (354)
                      +..+|++|+++
T Consensus       518 ~~tiIiitH~~  528 (571)
T TIGR02203       518 GRTTLVIAHRL  528 (571)
T ss_pred             CCEEEEEehhh
Confidence            67788888876

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=1.2e-07  Score=84.45  Aligned_cols=54  Identities=17%  Similarity=0.159  Sum_probs=38.5

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++.....+.+.+.+... +..+|++|++. .....+.+|+.+
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~  217 (280)
T PRK13649        162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYV  217 (280)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEE
Confidence            47899999998 78999999999999876543 45566666554 344555666543

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.60  E-value=1.1e-07  Score=83.23  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=38.2

Q ss_pred             CceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus       151 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l  206 (248)
T PRK03695        151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLL  206 (248)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence            4599999997 88999999999999876543 455666666544 344566665443

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.60  E-value=5.9e-08  Score=80.85  Aligned_cols=155  Identities=15%  Similarity=0.203  Sum_probs=92.0

Q ss_pred             ccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (354)
Q Consensus        16 ~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   95 (354)
                      +|.-++...+.-.++.|.+  +.+.||+|+||||+.++++. +..+..+.+.+++.+..-..+..+..         .-+
T Consensus        13 YG~~~~L~gvsl~v~~Gei--v~llG~NGaGKTTlLkti~G-l~~~~~G~I~~~G~dit~~p~~~r~r---------~Gi   80 (237)
T COG0410          13 YGKIQALRGVSLEVERGEI--VALLGRNGAGKTTLLKTIMG-LVRPRSGRIIFDGEDITGLPPHERAR---------LGI   80 (237)
T ss_pred             ccceeEEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCeeEEECCeecCCCCHHHHHh---------CCe
Confidence            4444445555555666666  88999999999999999998 55666788888887665111111110         113


Q ss_pred             eeCCCCCCCcchhHHHHHHHH---------------------HH------hcCCCCCCC------------CCCceEEEE
Q 018543           96 ELSPSDAGFQDRYVVQEVIKE---------------------MA------KNRPIDTKG------------KRGFKVLVL  136 (354)
Q Consensus        96 ~~~~~~~~~~~~~~i~~~~~~---------------------~~------~~~~~~~~~------------~~~~~viii  136 (354)
                      .+.|+........++.|.+..                     |-      ....-.+|+            ..+++++++
T Consensus        81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL  160 (237)
T COG0410          81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL  160 (237)
T ss_pred             EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence            333333333332333332221                     10      000001221            258899999


Q ss_pred             eCC-CcCCHHHHHHHHHHHhhccCc-eeEEEEecCCCcccHHHhhhcc
Q 018543          137 NEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       137 DE~-d~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      ||+ ..|.|...+.+.+.+.+.... ...|+...+.-+..-.+.+|..
T Consensus       161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~y  208 (237)
T COG0410         161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGY  208 (237)
T ss_pred             cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEE
Confidence            998 789999888888888776532 4455555555555556667754

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.59  E-value=8.2e-08  Score=94.59  Aligned_cols=136  Identities=19%  Similarity=0.338  Sum_probs=79.5

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  102 (354)
                      +.+.-.++.|+.  +.+.||+|+||||+++.+++ ++.+..+.+.+++.+..          ++....-...+.+.+++.
T Consensus       352 ~~inl~i~~G~~--v~IvG~sGsGKSTLl~lL~g-l~~p~~G~I~i~g~~i~----------~~~~~~~r~~i~~v~Q~~  418 (588)
T PRK13657        352 EDVSFEAKPGQT--VAIVGPTGAGKSTLINLLQR-VFDPQSGRILIDGTDIR----------TVTRASLRRNIAVVFQDA  418 (588)
T ss_pred             cceeEEECCCCE--EEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCEEhh----------hCCHHHHHhheEEEecCc
Confidence            333333344443  99999999999999999998 67888888888876443          110000011122222221


Q ss_pred             CCc---------------chhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC
Q 018543          103 GFQ---------------DRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV  139 (354)
Q Consensus       103 ~~~---------------~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE~  139 (354)
                      ...               ....+.+.++..     ....|.           .+++            -.+++|+++||+
T Consensus       419 ~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEp  498 (588)
T PRK13657        419 GLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA  498 (588)
T ss_pred             ccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            110               111122222211     000110           1221            147899999998


Q ss_pred             -CcCCHHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       140 -d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                       ..++++....+.+.+.+...+..+|++|++++
T Consensus       499 ts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~  531 (588)
T PRK13657        499 TSALDVETEAKVKAALDELMKGRTTFIIAHRLS  531 (588)
T ss_pred             ccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHH
Confidence             78999999999998877655677888888864

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=1.3e-07  Score=83.84  Aligned_cols=156  Identities=17%  Similarity=0.244  Sum_probs=82.4

Q ss_pred             HHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC-----------
Q 018543           24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA-----------   92 (354)
Q Consensus        24 ~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   92 (354)
                      .+.-.++.|..  +.|.||+|+||||+++++++ +..+..+.+.+++.......+.......+..+.+.           
T Consensus        20 ~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~   96 (274)
T PRK13644         20 NINLVIKKGEY--IGIIGKNGSGKSTLALHLNG-LLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVE   96 (274)
T ss_pred             eeEEEEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHH
Confidence            33334444544  99999999999999999998 56777888887776442000000000000101000           


Q ss_pred             ceeeeCCCCCCCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHH
Q 018543           93 NHVELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (354)
Q Consensus        93 ~~i~~~~~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll  151 (354)
                      +.+.+.....+...   ...+.+.++.+.     ...+..+|+            ..+++++++||+ ..|++..+..++
T Consensus        97 enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~  176 (274)
T PRK13644         97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL  176 (274)
T ss_pred             HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            00000000000000   001222222211     111111221            157899999997 889999999999


Q ss_pred             HHHhhcc-CceeEEEEecCCCcccHHHhhhccee
Q 018543          152 RTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       152 ~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +.+.+.. .+..+|++|++.+.+ + ..+|+.++
T Consensus       177 ~~l~~l~~~g~til~~tH~~~~~-~-~~d~v~~l  208 (274)
T PRK13644        177 ERIKKLHEKGKTIVYITHNLEEL-H-DADRIIVM  208 (274)
T ss_pred             HHHHHHHhCCCEEEEEecCHHHH-h-hCCEEEEE
Confidence            9997654 346677777776654 3 36666444

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.59  E-value=8.3e-08  Score=96.39  Aligned_cols=138  Identities=18%  Similarity=0.327  Sum_probs=82.2

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (354)
                      .+.+.-.++.|+.  +.+.||+|+||||+++.+++ ++.+..+.+.+++.+..          ++....-...+.+.+++
T Consensus       481 L~~i~l~i~~G~~--iaIvG~sGsGKSTLlklL~g-l~~p~~G~I~idg~~l~----------~~~~~~lr~~i~~v~Q~  547 (694)
T TIGR03375       481 LDNVSLTIRPGEK--VAIIGRIGSGKSTLLKLLLG-LYQPTEGSVLLDGVDIR----------QIDPADLRRNIGYVPQD  547 (694)
T ss_pred             eeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEEhh----------hCCHHHHHhccEEECCC
Confidence            3333334444443  99999999999999999998 77888888888876543          11100001112222222


Q ss_pred             CCC---------------cchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeC
Q 018543          102 AGF---------------QDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNE  138 (354)
Q Consensus       102 ~~~---------------~~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE  138 (354)
                      ...               .+...+.+.++..     -...|.           .+|+            -.+++++++||
T Consensus       548 ~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE  627 (694)
T TIGR03375       548 PRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE  627 (694)
T ss_pred             hhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            111               0111122222211     001111           1121            14789999999


Q ss_pred             C-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543          139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       139 ~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~  172 (354)
                      + ..++++....+.+.+.+..++..+|++|++.+.
T Consensus       628 ~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~  662 (694)
T TIGR03375       628 PTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSL  662 (694)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            8 889999999999988877666788888888753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=1.8e-07  Score=83.61  Aligned_cols=158  Identities=18%  Similarity=0.228  Sum_probs=83.3

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc---cccccccccccCc---e-
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTTLSSAN---H-   94 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~-   94 (354)
                      .+.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..........   .....+..+.+..   . 
T Consensus        22 l~~vsl~i~~Ge~--v~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~   98 (288)
T PRK13643         22 LFDIDLEVKKGSY--TALIGHTGSGKSTLLQHLNG-LLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF   98 (288)
T ss_pred             eeeeEEEEcCCCE--EEEECCCCChHHHHHHHHhc-CCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence            3344444455554  99999999999999999998 66788888888776432000000   0000011111100   0 


Q ss_pred             -------eeeCCCCCCCcch---hHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHH
Q 018543           95 -------VELSPSDAGFQDR---YVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSRE  145 (354)
Q Consensus        95 -------i~~~~~~~~~~~~---~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~  145 (354)
                             +.+.+...+....   ..+.+.++.+.-      ..+..+++            ..+++++++||+ ..|++.
T Consensus        99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~  178 (288)
T PRK13643         99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK  178 (288)
T ss_pred             cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence                   0000000011000   112222222111      11111221            147899999998 789999


Q ss_pred             HHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543          146 AQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       146 ~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+..+.+.+.+... +..+|++|++. .....+.+|+.+
T Consensus       179 ~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~  216 (288)
T PRK13643        179 ARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYL  216 (288)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEE
Confidence            99999999876543 34555555554 444566677643

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=1.2e-07  Score=84.21  Aligned_cols=152  Identities=16%  Similarity=0.219  Sum_probs=80.8

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccC-----------
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSA-----------   92 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------   92 (354)
                      +.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++....  ...... ...+..+.+.           
T Consensus        26 v~l~i~~Ge~--~~I~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~i~--~~~~~~~~~~i~~v~q~~~~~~~~~tv~  100 (277)
T PRK13642         26 VSFSITKGEW--VSIIGQNGSGKSTTARLIDG-LFEEFEGKVKIDGELLT--AENVWNLRRKIGMVFQNPDNQFVGATVE  100 (277)
T ss_pred             eEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCCEEEECCEECC--cCCHHHHhcceEEEEECHHHhhccCCHH
Confidence            3333444544  99999999999999999998 55777788877775432  100000 0000000000           


Q ss_pred             ceeeeCCCCCCCcch---hHHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHH
Q 018543           93 NHVELSPSDAGFQDR---YVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (354)
Q Consensus        93 ~~i~~~~~~~~~~~~---~~i~~~~~~~-----~~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll  151 (354)
                      +.+.+.....+....   ..+.+.++.+     ....+..+++            ..+++++++||+ ..|+...+..++
T Consensus       101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~  180 (277)
T PRK13642        101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM  180 (277)
T ss_pred             HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            000000000000000   0112222211     1111111221            147899999998 789999999999


Q ss_pred             HHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       152 ~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +.+.+...  +..+|+++++.+.+ . ..+|+.+
T Consensus       181 ~~l~~l~~~~g~tiil~sH~~~~~-~-~~d~i~~  212 (277)
T PRK13642        181 RVIHEIKEKYQLTVLSITHDLDEA-A-SSDRILV  212 (277)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHH-H-hCCEEEE
Confidence            99876543  45677777776654 3 3566543

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=1.3e-07  Score=84.24  Aligned_cols=152  Identities=14%  Similarity=0.175  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (354)
                      +.+.+.-.++.|..  +.|.||+|+||||+++++++ +..+..+.+.+++...........   .+     ...+.+.++
T Consensus        21 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~i~G-l~~p~~G~i~i~g~~~~~~~~~~~---~~-----~~~ig~v~q   89 (283)
T PRK13636         21 ALKGININIKKGEV--TAILGGNGAGKSTLFQNLNG-ILKPSSGRILFDGKPIDYSRKGLM---KL-----RESVGMVFQ   89 (283)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCccEEEECCEECCCCcchHH---HH-----HhhEEEEec
Confidence            33444444555554  99999999999999999998 567778888887765420000000   00     001122111


Q ss_pred             CC--------------------CCcch---hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-
Q 018543          101 DA--------------------GFQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-  139 (354)
Q Consensus       101 ~~--------------------~~~~~---~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-  139 (354)
                      +.                    +....   ..+.+.++.+.     ......+|+            ..+++++++||+ 
T Consensus        90 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt  169 (283)
T PRK13636         90 DPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPT  169 (283)
T ss_pred             CcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            11                    00000   01122211111     011111221            157899999997 


Q ss_pred             CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          140 DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       140 d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ..|++..+..+.+.+.+...  +..+|+++++.+. .+.+.+|..++
T Consensus       170 ~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dri~~l  215 (283)
T PRK13636        170 AGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDNVFVM  215 (283)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEE
Confidence            78999999999998876543  3455565555443 45566776443

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.59  E-value=2e-07  Score=80.76  Aligned_cols=54  Identities=17%  Similarity=0.236  Sum_probs=38.8

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|+...+..+.+.+.+...  ...+|+++++... .+.+.+|+.+
T Consensus       146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~-~~~~~d~i~~  202 (235)
T cd03299         146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE-AWALADKVAI  202 (235)
T ss_pred             cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEE
Confidence            47899999998 78999999999998876532  4566666666543 3555566543

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.59  E-value=1.7e-07  Score=82.79  Aligned_cols=48  Identities=25%  Similarity=0.351  Sum_probs=35.9

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~   73 (354)
                      +.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++...
T Consensus        28 ~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i   75 (265)
T TIGR02769        28 TNVSLSIEEGET--VGLLGRSGCGKSTLARLLLG-LEKPAQGTVSFRGQDL   75 (265)
T ss_pred             eCceeEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEc
Confidence            334444444544  99999999999999999998 5677778787776543

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.58  E-value=2e-07  Score=82.39  Aligned_cols=54  Identities=26%  Similarity=0.351  Sum_probs=40.5

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..++......+.+.+.+...++.+|+++++.+.+ .. .+|+.++
T Consensus       155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i-~~-~dri~vl  209 (275)
T cd03289         155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAM-LE-CQRFLVI  209 (275)
T ss_pred             cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-Hh-CCEEEEe
Confidence            57899999998 7899998888888887655567788888887544 22 5666443

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=3e-07  Score=74.12  Aligned_cols=132  Identities=16%  Similarity=0.205  Sum_probs=79.1

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY  108 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  108 (354)
                      +..|..  +.+.||+|+||||+.|.+|. +..++.+.+.+++....  ......         ..+.-+..-..+.+...
T Consensus        25 l~~Ge~--~~i~G~NG~GKTtLLRilaG-Ll~p~~G~v~~~~~~i~--~~~~~~---------~~~l~yLGH~~giK~eL   90 (209)
T COG4133          25 LNAGEA--LQITGPNGAGKTTLLRILAG-LLRPDAGEVYWQGEPIQ--NVRESY---------HQALLYLGHQPGIKTEL   90 (209)
T ss_pred             EcCCCE--EEEECCCCCcHHHHHHHHHc-ccCCCCCeEEecCCCCc--cchhhH---------HHHHHHhhccccccchh
Confidence            344444  89999999999999999998 78888888887765433  000000         01122222233444444


Q ss_pred             HHHHHHHHHHhcCCC------------------------CCCC------------CCCceEEEEeCC-CcCCHHHHHHHH
Q 018543          109 VVQEVIKEMAKNRPI------------------------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (354)
Q Consensus       109 ~i~~~~~~~~~~~~~------------------------~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll  151 (354)
                      ++.|.+++.......                        .+|.            .....+-|+||+ -.++++....|-
T Consensus        91 Ta~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~  170 (209)
T COG4133          91 TALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLT  170 (209)
T ss_pred             hHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHH
Confidence            444444443321110                        0110            135678999998 678999988888


Q ss_pred             HHHhhcc-CceeEEEEecCCCccc
Q 018543          152 RTMEKYS-ASCRLILCCNSSSKVT  174 (354)
Q Consensus       152 ~~le~~~-~~~~~Il~~~~~~~l~  174 (354)
                      ..|.... ....++++|+.+..+.
T Consensus       171 ~l~~~H~~~GGiVllttHq~l~~~  194 (209)
T COG4133         171 ALMAAHAAQGGIVLLTTHQPLPIA  194 (209)
T ss_pred             HHHHHHhcCCCEEEEecCCccCCC
Confidence            8886654 4566666666665544

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.58  E-value=2.6e-07  Score=80.69  Aligned_cols=55  Identities=13%  Similarity=0.153  Sum_probs=39.1

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+...+..+|++|++.+ ....+.+|+.++
T Consensus       159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~-~~~~~~d~i~~l  214 (246)
T PRK14269        159 IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQ-QGKRVADYTAFF  214 (246)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhCcEEEEE
Confidence            57899999998 78999999999999977654555666666554 334455665443

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.58  E-value=9.9e-08  Score=94.13  Aligned_cols=131  Identities=15%  Similarity=0.259  Sum_probs=79.7

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcc-
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD-  106 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-  106 (354)
                      .++.|+.  +.+.||+|+||||+++.+++ ++.++.+.+.+++.+..          ++....-.+++.+.+++....+ 
T Consensus       363 ~i~~Ge~--iaIvG~SGsGKSTLl~lL~g-l~~p~~G~I~idg~~i~----------~~~~~~l~~~i~~v~Q~~~lF~~  429 (592)
T PRK10790        363 SVPSRGF--VALVGHTGSGKSTLASLLMG-YYPLTEGEIRLDGRPLS----------SLSHSVLRQGVAMVQQDPVVLAD  429 (592)
T ss_pred             EEcCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCceEEECCEEhh----------hCCHHHHHhheEEEccCCccccc
Confidence            3344443  99999999999999999998 77888888888886554          1111111122333333222111 


Q ss_pred             -------------hhHHHHHHHHHH-----hcCC-----------CCCCC------------CCCceEEEEeCC-CcCCH
Q 018543          107 -------------RYVVQEVIKEMA-----KNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSR  144 (354)
Q Consensus       107 -------------~~~i~~~~~~~~-----~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~  144 (354)
                                   ...+.+.++...     ...|           ..+++            -.+++|+++||+ ..+++
T Consensus       430 Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~  509 (592)
T PRK10790        430 TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDS  509 (592)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence                         112222222211     0001           01121            146789999998 78999


Q ss_pred             HHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          145 EAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       145 ~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      +....+.+.+.+...+..+|++|++++
T Consensus       510 ~t~~~i~~~l~~~~~~~tvIivtHr~~  536 (592)
T PRK10790        510 GTEQAIQQALAAVREHTTLVVIAHRLS  536 (592)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEecchH
Confidence            988888888877655677888888863

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.58  E-value=1.5e-07  Score=90.90  Aligned_cols=156  Identities=14%  Similarity=0.144  Sum_probs=80.9

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------   92 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   92 (354)
                      +.+.-.+..|..  +.|.||+|+||||+++++++ +..++.+.+.+++..+....+.......+..+.+.          
T Consensus        21 ~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   97 (501)
T PRK10762         21 SGAALNVYPGRV--MALVGENGAGKSTMMKVLTG-IYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIA   97 (501)
T ss_pred             eeeeEEEcCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHH
Confidence            333334444544  89999999999999999998 55777788877775432100000000001111110          


Q ss_pred             ceeeeCCCC---CCCcch----hHHHHHHHHHHhcC-----CCCCCC------------CCCceEEEEeCC-CcCCHHHH
Q 018543           93 NHVELSPSD---AGFQDR----YVVQEVIKEMAKNR-----PIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (354)
Q Consensus        93 ~~i~~~~~~---~~~~~~----~~i~~~~~~~~~~~-----~~~~~~------------~~~~~viiiDE~-d~l~~~~~  147 (354)
                      +.+.+....   .+....    ..+.++++.+.-..     +..+|+            ..+++++++||+ ..|++...
T Consensus        98 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~  177 (501)
T PRK10762         98 ENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET  177 (501)
T ss_pred             HHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHH
Confidence            011110000   000000    12233333321110     011121            157899999997 88999999


Q ss_pred             HHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcc
Q 018543          148 HSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       148 ~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      ..+.+.+.+... +..+|+++++. .....+.+|+.
T Consensus       178 ~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~  212 (501)
T PRK10762        178 ESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVT  212 (501)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEE
Confidence            999888876533 34556655554 34455666654

>PRK13695 putative NTPase; Provisional

Probab=98.57  E-value=2.3e-06  Score=70.48  Aligned_cols=70  Identities=13%  Similarity=0.202  Sum_probs=45.9

Q ss_pred             CCceEEEEeCCCcC---CHHHHHHHHHHHhhccCceeEEEEecCCC--cccHHHhhh--cceeeecCCCHHHHHHHHHHH
Q 018543          129 RGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSR--CLNIRINSPTEEQIVKVLEFI  201 (354)
Q Consensus       129 ~~~~viiiDE~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~~--~l~~~l~sR--~~~i~~~~~~~~~~~~~L~~~  201 (354)
                      .+++++++||+..+   +....+.+...++   .+..+|++++...  ...+.+.+|  +.++++.+-+.+++...+.++
T Consensus        95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~  171 (174)
T PRK13695         95 EEADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR  171 (174)
T ss_pred             CCCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence            35689999996543   4444556666663   2356788777643  456667766  467888887777776666543

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.57  E-value=3.3e-07  Score=80.76  Aligned_cols=55  Identities=9%  Similarity=0.117  Sum_probs=39.8

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+++.+.+......+|++|++.+ ....+.+|+.++
T Consensus       173 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  228 (260)
T PRK10744        173 IRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQ-QAARCSDYTAFM  228 (260)
T ss_pred             CCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence            57899999997 78999999999999977654455666666654 344555665443

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=1.8e-07  Score=82.99  Aligned_cols=55  Identities=9%  Similarity=0.183  Sum_probs=39.4

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++..+..+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus       154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l  210 (275)
T PRK13639        154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVM  210 (275)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence            57899999997 78999999999999977543 455666666644 444556666443

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.56  E-value=1.2e-07  Score=92.19  Aligned_cols=142  Identities=15%  Similarity=0.233  Sum_probs=80.1

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc-cccccccccccCce------
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTTLSSANH------   94 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------   94 (354)
                      .+.+.-.++.|+.  +.+.||+|+||||+++.+++ ++.+..+.+.+++.+...-.... +.  .+..+.+..+      
T Consensus       338 l~~i~l~i~~G~~--~~ivG~sGsGKSTL~~ll~g-~~~~~~G~I~~~g~~i~~~~~~~lr~--~i~~v~Q~~~lf~~ti  412 (529)
T TIGR02857       338 LRPVSFTVPPGER--VALVGPSGAGKSTLLNLLLG-FVDPTEGSIAVNGVPLADADADSWRD--QIAWVPQHPFLFAGTI  412 (529)
T ss_pred             ccceeEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEehhhCCHHHHHh--heEEEcCCCcccCcCH
Confidence            3334434444443  99999999999999999998 77888888888876543000000 00  0111111110      


Q ss_pred             ---eeeCCCCCCCcchhHHHHHHHHH------HhcC----------CCCCCC------------CCCceEEEEeCC-CcC
Q 018543           95 ---VELSPSDAGFQDRYVVQEVIKEM------AKNR----------PIDTKG------------KRGFKVLVLNEV-DKL  142 (354)
Q Consensus        95 ---i~~~~~~~~~~~~~~i~~~~~~~------~~~~----------~~~~~~------------~~~~~viiiDE~-d~l  142 (354)
                         +.+..  ... ....+.+.++..      ...+          ...+++            ..+++++++||+ ..+
T Consensus       413 ~~Ni~~~~--~~~-~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~l  489 (529)
T TIGR02857       413 AENIRLAR--PDA-SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHL  489 (529)
T ss_pred             HHHHhccC--CCC-CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence               11100  000 111222222221      1100          011221            147899999998 789


Q ss_pred             CHHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          143 SREAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       143 ~~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      +++....+.+.+.+...+..+|++|++.+
T Consensus       490 D~~~~~~i~~~l~~~~~~~t~i~itH~~~  518 (529)
T TIGR02857       490 DAETEALVTEALRALAQGRTVLLVTHRLA  518 (529)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence            99999999998887666677888888863

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.56  E-value=1.1e-07  Score=95.36  Aligned_cols=143  Identities=22%  Similarity=0.306  Sum_probs=81.2

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc-cccccccccccCce-------
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTTLSSANH-------   94 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------   94 (354)
                      +.+.-.++.|+  .+.+.||+|+||||+++.+++ ++.+..|.+.+++.+...-+... +.  .+..+.+..+       
T Consensus       474 ~~i~l~i~~G~--~vaivG~sGsGKSTL~~ll~g-~~~p~~G~I~idg~~i~~~~~~~~r~--~i~~v~q~~~lf~~ti~  548 (694)
T TIGR01846       474 SNLNLDIKPGE--FIGIVGPSGSGKSTLTKLLQR-LYTPQHGQVLVDGVDLAIADPAWLRR--QMGVVLQENVLFSRSIR  548 (694)
T ss_pred             ccceEEECCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEehhhCCHHHHHH--hCeEEccCCeehhhhHH
Confidence            33333344443  399999999999999999998 67888888888886543100000 00  0111111111       


Q ss_pred             --eeeCCCCCCCcchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC-CcCC
Q 018543           95 --VELSPSDAGFQDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLS  143 (354)
Q Consensus        95 --i~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~  143 (354)
                        +.+.  .... ....+.+.++..     ....|.           .+++            ..+++++++||+ ..|+
T Consensus       549 eNi~~~--~~~~-~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD  625 (694)
T TIGR01846       549 DNIALC--NPGA-PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD  625 (694)
T ss_pred             HHHhcC--CCCC-CHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence              1110  0011 111222222211     111110           1111            147899999998 8899


Q ss_pred             HHHHHHHHHHHhhccCceeEEEEecCCCcc
Q 018543          144 REAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (354)
Q Consensus       144 ~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l  173 (354)
                      +.....+.+.+.+...+..+|++|++.+.+
T Consensus       626 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~~  655 (694)
T TIGR01846       626 YESEALIMRNMREICRGRTVIIIAHRLSTV  655 (694)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCChHHH
Confidence            999999999998766667788888887543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.56  E-value=1.8e-07  Score=84.92  Aligned_cols=149  Identities=17%  Similarity=0.236  Sum_probs=82.3

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC--
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA--  102 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--  102 (354)
                      +.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++....  .....   +....  ...+.+.+++.  
T Consensus        40 vsl~i~~Ge~--~~lvG~sGsGKSTLlk~i~G-l~~p~~G~I~~~G~~i~--~~~~~---~~~~~--r~~i~~v~Q~~~~  109 (331)
T PRK15079         40 VTLRLYEGET--LGVVGESGCGKSTFARAIIG-LVKATDGEVAWLGKDLL--GMKDD---EWRAV--RSDIQMIFQDPLA  109 (331)
T ss_pred             EEEEEcCCCE--EEEECCCCCCHHHHHHHHHC-CCCCCCcEEEECCEECC--cCCHH---HHHHH--hCceEEEecCchh
Confidence            3333444544  99999999999999999998 56777788888776543  10000   00000  00122221111  


Q ss_pred             CCc--------------------c----hhHHHHHHHHHH------hcCCCCCCC------------CCCceEEEEeCC-
Q 018543          103 GFQ--------------------D----RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-  139 (354)
Q Consensus       103 ~~~--------------------~----~~~i~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-  139 (354)
                      ...                    .    ...++++++.+.      ...+..+|+            ..+++++|+||+ 
T Consensus       110 ~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPt  189 (331)
T PRK15079        110 SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPV  189 (331)
T ss_pred             hcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            000                    0    011222232211      111112221            157899999997 


Q ss_pred             CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          140 DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       140 d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ..|+...+..+++.|.+...  +..+|++|++. .....+.+|+.++
T Consensus       190 s~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl  235 (331)
T PRK15079        190 SALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVM  235 (331)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence            78999999999888866532  45566666665 3444556666443

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=3.4e-07  Score=80.34  Aligned_cols=55  Identities=9%  Similarity=0.169  Sum_probs=39.8

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.|.+...+..+|+++++.+ ....+.+|+.++
T Consensus       166 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  221 (253)
T PRK14267        166 MKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPA-QAARVSDYVAFL  221 (253)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHH-HHHhhCCEEEEE
Confidence            57899999998 78999999999999977654555666666654 334555665443

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.55  E-value=3.1e-07  Score=81.43  Aligned_cols=52  Identities=6%  Similarity=0.125  Sum_probs=37.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC  181 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~  181 (354)
                      .+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+. ...+.+|+
T Consensus       159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~-~~~~~d~v  212 (272)
T PRK15056        159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS-VTEFCDYT  212 (272)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEE
Confidence            47899999997 88999999999999977543 4456666665543 33455554

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.55  E-value=6e-07  Score=75.59  Aligned_cols=52  Identities=17%  Similarity=0.316  Sum_probs=42.4

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhc---cCceeEEEEecCCCcccHHHhhh
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSR  180 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~l~sR  180 (354)
                      .++.++|+||+ ..|+..+...|++.+++.   +....+|++|++.+.+++-+-.+
T Consensus       188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~  243 (257)
T COG1119         188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHR  243 (257)
T ss_pred             cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceE
Confidence            57899999996 899999998899988764   34577999999999888766544

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=2.4e-07  Score=82.81  Aligned_cols=159  Identities=16%  Similarity=0.255  Sum_probs=84.0

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC---ccccccccccccC-------
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTTLSSA-------   92 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------   92 (354)
                      +.+.-.++.|..  +.|.||+|+||||+++++++ +..+..+.+.+++.........   ......+..+.+.       
T Consensus        24 ~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~  100 (290)
T PRK13634         24 YDVNVSIPSGSY--VAIIGHTGSGKSTLLQHLNG-LLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE  100 (290)
T ss_pred             eeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence            333334445544  99999999999999999998 5677778888877644200000   0000000011000       


Q ss_pred             ----ceeeeCCCCCCCcch---hHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543           93 ----NHVELSPSDAGFQDR---YVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (354)
Q Consensus        93 ----~~i~~~~~~~~~~~~---~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (354)
                          +.+.+.....+....   ..+.+.++.+.-      ..+..+++            ..+++++++||+ ..|++..
T Consensus       101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~  180 (290)
T PRK13634        101 ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG  180 (290)
T ss_pred             hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence                000000000011000   112222322211      01111221            157899999998 7899999


Q ss_pred             HHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcceee
Q 018543          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNIR  185 (354)
Q Consensus       147 ~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i~  185 (354)
                      +..+++.+.+...  +..+|++|++.+ ....+.+|+.++.
T Consensus       181 ~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~  220 (290)
T PRK13634        181 RKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH  220 (290)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence            9999999877643  455666666654 4456677775543

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.55  E-value=1.2e-07  Score=83.23  Aligned_cols=55  Identities=7%  Similarity=0.172  Sum_probs=40.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+......+|+++++.. ..+.+.+|+.++
T Consensus       170 ~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~-~~~~~~d~v~~l  225 (257)
T PRK14246        170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQ-QVARVADYVAFL  225 (257)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHH-HHHHhCCEEEEE
Confidence            57899999998 78999999999999977655566666666653 445556666443

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.55  E-value=1.7e-07  Score=92.18  Aligned_cols=45  Identities=18%  Similarity=0.318  Sum_probs=36.8

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l  173 (354)
                      .+++++++||+ ..++.+....+.+.+++...+..+|++|++.+.+
T Consensus       488 ~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~  533 (585)
T TIGR01192       488 KNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTV  533 (585)
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHH
Confidence            57899999998 7899999999999887765567788888887543

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.55  E-value=5e-07  Score=78.81  Aligned_cols=27  Identities=33%  Similarity=0.685  Sum_probs=24.0

Q ss_pred             CCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           33 DCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        33 ~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +..+++|+||||+|||+++-++++++.
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~  130 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELL  130 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence            334599999999999999999999985

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=2.4e-07  Score=83.87  Aligned_cols=55  Identities=7%  Similarity=0.155  Sum_probs=38.9

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+.. .+..+|++|++.+ ....+.+|+.++
T Consensus       193 ~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl  249 (320)
T PRK13631        193 IQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVM  249 (320)
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence            47899999997 8899999999988886643 3455666666654 334555665443

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.55  E-value=2.5e-07  Score=81.85  Aligned_cols=54  Identities=19%  Similarity=0.234  Sum_probs=38.5

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|+...+..+.+.+++...  +..+|+++++.+ ....+.+|+..
T Consensus       168 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~  224 (268)
T PRK10419        168 VEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMV  224 (268)
T ss_pred             cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEE
Confidence            57899999998 78999999999998876542  455666666643 34445555543

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=2.7e-07  Score=82.36  Aligned_cols=159  Identities=17%  Similarity=0.296  Sum_probs=84.5

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC-ccccccccccccCc-------
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-RNIDLELTTLSSAN-------   93 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------   93 (354)
                      .+.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......... ......+..+.+..       
T Consensus        23 l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~   99 (287)
T PRK13637         23 LDNVNIEIEDGEF--VGLIGHTGSGKSTLIQHLNG-LLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE   99 (287)
T ss_pred             eeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence            3334444455554  99999999999999999998 6677888888877654300000 00000011111100       


Q ss_pred             ----eeeeCCCCCCCcch---hHHHHHHHHHHhc-------CCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543           94 ----HVELSPSDAGFQDR---YVVQEVIKEMAKN-------RPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (354)
Q Consensus        94 ----~i~~~~~~~~~~~~---~~i~~~~~~~~~~-------~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (354)
                          .+.+.....+....   ..+.+.++.+.-.       .+..+++            ..+++++++||+ ..|++..
T Consensus       100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~  179 (287)
T PRK13637        100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG  179 (287)
T ss_pred             cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence                00000000011110   1123333332111       0111221            147899999998 7899999


Q ss_pred             HHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       147 ~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +..+++.+.+...  +..+|++|++.+ ....+.+|+.++
T Consensus       180 ~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l  218 (287)
T PRK13637        180 RDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVM  218 (287)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            9999999977643  345666666543 444566776544

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.54  E-value=2.4e-07  Score=81.93  Aligned_cols=54  Identities=17%  Similarity=0.216  Sum_probs=38.9

Q ss_pred             CceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +++++++||+ ..|++.....+.+.+.+...  +..+|+++++.+ ....+.+|+.++
T Consensus       172 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l  228 (272)
T PRK13547        172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAML  228 (272)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence            7899999997 78999999999999977543  355666666654 345556665443

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.54  E-value=9e-07  Score=76.93  Aligned_cols=161  Identities=19%  Similarity=0.248  Sum_probs=90.4

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc------cccc---cccccccC
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR------NIDL---ELTTLSSA   92 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~   92 (354)
                      .+.+.-.+..|.+  +-+.|.+|.||||++|++-. |-.|+.+.+.+++.+...-....      +.+.   .++.+++.
T Consensus        22 l~~vsL~I~~GeI--~GIIG~SGAGKSTLiR~iN~-Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr   98 (339)
T COG1135          22 LDDVSLEIPKGEI--FGIIGYSGAGKSTLLRLINL-LERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR   98 (339)
T ss_pred             eccceEEEcCCcE--EEEEcCCCCcHHHHHHHHhc-cCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence            3444445566665  88999999999999999875 88899999988886543100000      0000   00011111


Q ss_pred             ce---eeeCCCCCCCcc---hhHHHHHHHHH-----HhcCCCCCCCC------------CCceEEEEeCC-CcCCHHHHH
Q 018543           93 NH---VELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKGK------------RGFKVLVLNEV-DKLSREAQH  148 (354)
Q Consensus        93 ~~---i~~~~~~~~~~~---~~~i~~~~~~~-----~~~~~~~~~~~------------~~~~viiiDE~-d~l~~~~~~  148 (354)
                      .+   +-+...-.+...   ...+.++++.+     +...|..+|+.            .+|+|++.||+ ..|+|+.-+
T Consensus        99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~  178 (339)
T COG1135          99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ  178 (339)
T ss_pred             hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence            11   111111111111   11233333322     22233334432            47899999998 789999888


Q ss_pred             HHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcceee
Q 018543          149 SLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNIR  185 (354)
Q Consensus       149 ~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i~  185 (354)
                      .++..|.+.. .....|+.-+|...+...+++|..+++
T Consensus       179 sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~  216 (339)
T COG1135         179 SILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD  216 (339)
T ss_pred             HHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEee
Confidence            8888875532 234444555566678888999875544

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.54  E-value=1.9e-07  Score=94.09  Aligned_cols=124  Identities=18%  Similarity=0.269  Sum_probs=74.7

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC-----------
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF-----------  104 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------  104 (354)
                      ++.+.||+|+||||+++.+++ ++.+..+.+.+++.+..          ++....-...+.+.+++...           
T Consensus       502 ~vaIvG~SGsGKSTLlklL~g-l~~p~~G~I~idg~~i~----------~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l  570 (708)
T TIGR01193       502 KTTIVGMSGSGKSTLAKLLVG-FFQARSGEILLNGFSLK----------DIDRHTLRQFINYLPQEPYIFSGSILENLLL  570 (708)
T ss_pred             EEEEECCCCCCHHHHHHHHhc-cCCCCCcEEEECCEEHH----------HcCHHHHHHheEEEecCceehhHHHHHHHhc
Confidence            399999999999999999998 77888899998886544          11100000112222222111           


Q ss_pred             -----cchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC-CcCCHHHHHHH
Q 018543          105 -----QDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSL  150 (354)
Q Consensus       105 -----~~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE~-d~l~~~~~~~L  150 (354)
                           .+...+.+.++..     ....|.           .+++            -.+++++++||+ ..|+.+....+
T Consensus       571 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i  650 (708)
T TIGR01193       571 GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI  650 (708)
T ss_pred             cCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence                 1111222222221     011111           1121            147899999998 78999988888


Q ss_pred             HHHHhhccCceeEEEEecCCC
Q 018543          151 RRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       151 l~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+.+.+. .+..+|++|++.+
T Consensus       651 ~~~L~~~-~~~T~IiitHr~~  670 (708)
T TIGR01193       651 VNNLLNL-QDKTIIFVAHRLS  670 (708)
T ss_pred             HHHHHHh-cCCEEEEEecchH
Confidence            8888765 3456788888875

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.54  E-value=4.9e-07  Score=79.15  Aligned_cols=55  Identities=9%  Similarity=0.178  Sum_probs=39.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+......+|+++++.+ ....+.+|+.++
T Consensus       163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~v~~l  218 (250)
T PRK14240        163 VEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQ-QASRISDKTAFF  218 (250)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHH-HHHhhCCEEEEE
Confidence            47899999998 78999999999998877654455666666543 444555665433

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=4.4e-07  Score=79.41  Aligned_cols=55  Identities=18%  Similarity=0.270  Sum_probs=40.4

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+......+|++|++.+ ....+.+|+.++
T Consensus       162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~-~~~~~~d~i~~l  217 (249)
T PRK14253        162 MEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQ-QARRISDRTAFF  217 (249)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEE
Confidence            47899999997 78999999999999987655555666666543 445566666443

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.53  E-value=2.4e-07  Score=90.94  Aligned_cols=138  Identities=13%  Similarity=0.263  Sum_probs=81.9

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (354)
                      .+.+.-.++.|+.  +.+.||+|+||||+++.+++ ++.++.+.+.+++.+..  .        +....-...+.+.+++
T Consensus       356 l~~i~~~i~~G~~--~aivG~sGsGKSTL~~ll~g-~~~p~~G~I~i~g~~i~--~--------~~~~~~r~~i~~v~Q~  422 (574)
T PRK11160        356 LKGLSLQIKAGEK--VALLGRTGCGKSTLLQLLTR-AWDPQQGEILLNGQPIA--D--------YSEAALRQAISVVSQR  422 (574)
T ss_pred             eecceEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEEhh--h--------CCHHHHHhheeEEccc
Confidence            3334434444443  99999999999999999998 67888888888876543  1        0000000111121111


Q ss_pred             CCC---------------cchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeC
Q 018543          102 AGF---------------QDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNE  138 (354)
Q Consensus       102 ~~~---------------~~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE  138 (354)
                      ...               .....+.+.++..     ... |.           .+++            -.+++++++||
T Consensus       423 ~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE  501 (574)
T PRK11160        423 VHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDE  501 (574)
T ss_pred             chhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            110               0111223333221     111 11           1121            14789999999


Q ss_pred             C-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcc
Q 018543          139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (354)
Q Consensus       139 ~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l  173 (354)
                      + ..++++....+.+.+.+...+..+|+++++++.+
T Consensus       502 ~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~  537 (574)
T PRK11160        502 PTEGLDAETERQILELLAEHAQNKTVLMITHRLTGL  537 (574)
T ss_pred             CcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHH
Confidence            8 7899999999999998766667788888887543

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=1.1e-07  Score=91.36  Aligned_cols=51  Identities=25%  Similarity=0.508  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~   74 (354)
                      +.+.+.-.++.|+.  +-+.||+|.||||++..+-+ ++.|..+.+.+|+.+..
T Consensus       483 Vlk~lsfti~pGe~--vALVGPSGsGKSTiasLL~r-fY~PtsG~IllDG~~i~  533 (716)
T KOG0058|consen  483 VLKNLSFTIRPGEV--VALVGPSGSGKSTIASLLLR-FYDPTSGRILLDGVPIS  533 (716)
T ss_pred             hhcCceeeeCCCCE--EEEECCCCCCHHHHHHHHHH-hcCCCCCeEEECCeehh
Confidence            44555555555554  89999999999999999987 89999999999998766

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.53  E-value=3.1e-07  Score=80.36  Aligned_cols=55  Identities=16%  Similarity=0.293  Sum_probs=38.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|+++++.+ ....+.+|+.++
T Consensus       137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l  194 (251)
T PRK09544        137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCL  194 (251)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence            47899999998 88999999999888866532  355666666654 334455555433

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.53  E-value=1.3e-07  Score=95.23  Aligned_cols=136  Identities=18%  Similarity=0.291  Sum_probs=79.7

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (354)
                      .+.+.-.++.|+  .+.+.||+|+||||+++.+++ ++.+..|.+.+++.+...          +....-...+.+.+++
T Consensus       495 L~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~g-l~~p~~G~I~idg~~i~~----------~~~~~lr~~i~~v~Q~  561 (710)
T TIGR03796       495 IENFSLTLQPGQ--RVALVGGSGSGKSTIAKLVAG-LYQPWSGEILFDGIPREE----------IPREVLANSVAMVDQD  561 (710)
T ss_pred             ccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEeHHH----------CCHHHHHhheeEEecC
Confidence            333433444443  399999999999999999998 778888989888865541          0000000112222211


Q ss_pred             CCC---------------cchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeC
Q 018543          102 AGF---------------QDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNE  138 (354)
Q Consensus       102 ~~~---------------~~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE  138 (354)
                      ...               .+...+.+.++..     ....|.           ++|+            -.+++++++||
T Consensus       562 ~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDE  641 (710)
T TIGR03796       562 IFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE  641 (710)
T ss_pred             ChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEEC
Confidence            110               1111222322221     111111           1221            14789999999


Q ss_pred             C-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543          139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       139 ~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~  172 (354)
                      + ..|+......+.+.+.+  .+..+|++|++.+.
T Consensus       642 ptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~  674 (710)
T TIGR03796       642 ATSALDPETEKIIDDNLRR--RGCTCIIVAHRLST  674 (710)
T ss_pred             ccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHH
Confidence            8 78999999999888876  35677888888643

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PHA02774 E1; Provisional

Probab=98.53  E-value=2.7e-07  Score=87.38  Aligned_cols=118  Identities=19%  Similarity=0.280  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCC
Q 018543           21 IAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (354)
                      ....|+.+++...-.+ ++|+||||+|||+++.++++.+.+..          +.                     .+|.
T Consensus       420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~v----------i~---------------------fvN~  468 (613)
T PHA02774        420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKV----------IS---------------------FVNS  468 (613)
T ss_pred             HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCE----------EE---------------------EEEC
Confidence            3466777775432223 99999999999999999999762111          00                     0110


Q ss_pred             CCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCc-CCHHHHHHHHHHHhhcc-------------CceeEEE
Q 018543          100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYS-------------ASCRLIL  165 (354)
Q Consensus       100 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~-l~~~~~~~Ll~~le~~~-------------~~~~~Il  165 (354)
                         ...           +. ..+     ..+.+++++||+-. ........|+.+|+..+             ..+++|+
T Consensus       469 ---~s~-----------Fw-Lqp-----l~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlII  528 (613)
T PHA02774        469 ---KSH-----------FW-LQP-----LADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLI  528 (613)
T ss_pred             ---ccc-----------cc-cch-----hccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEE
Confidence               000           00 011     23448999999922 12334456777775432             2367888


Q ss_pred             EecCCC---cccHHHhhhcceeeecCC
Q 018543          166 CCNSSS---KVTEAIRSRCLNIRINSP  189 (354)
Q Consensus       166 ~~~~~~---~l~~~l~sR~~~i~~~~~  189 (354)
                      +||-..   .-...|.||+..++|+.+
T Consensus       529 TSN~d~~~~~~~~yL~sRi~~f~F~n~  555 (613)
T PHA02774        529 TSNIDVKAEDRYKYLHSRITVFEFPNP  555 (613)
T ss_pred             ecCCCcccchhhHHhhhhEEEEECCCC
Confidence            888543   345678999998888654

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.52  E-value=3.4e-07  Score=80.78  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=39.1

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|+...+..+.+.+.+...  +..+|+++++.+. ...+.+|+.+
T Consensus       169 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-~~~~~d~i~~  225 (262)
T PRK09984        169 QQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIVA  225 (262)
T ss_pred             cCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            47899999998 78999999999999977642  4556666666543 3455566543

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.52  E-value=6e-07  Score=78.89  Aligned_cols=52  Identities=13%  Similarity=0.225  Sum_probs=39.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .+++++++||+ ..|++.....+.+.+.+...+..+|+++++.+.+. . .+|+.
T Consensus       173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~-~-~dri~  225 (257)
T cd03288         173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTIL-D-ADLVL  225 (257)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHH-h-CCEEE
Confidence            47899999997 78999999999998877555666777777776543 2 55553

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=3.4e-07  Score=81.93  Aligned_cols=55  Identities=16%  Similarity=0.233  Sum_probs=39.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|+++++.+ ....+.+|+.++
T Consensus       167 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l  224 (289)
T PRK13645        167 MDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVM  224 (289)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence            47899999997 88999999999998876532  455666666654 334555665443

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.52  E-value=1.8e-07  Score=93.81  Aligned_cols=136  Identities=18%  Similarity=0.272  Sum_probs=80.2

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (354)
                      .+.+.-.++.|+  .+.+.||+|+||||+++.+++ ++.+..+.+.+++.+..          ++....-...+.+.+++
T Consensus       469 L~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~g-l~~p~~G~I~idg~~i~----------~~~~~~lr~~i~~v~Q~  535 (686)
T TIGR03797       469 LDDVSLQIEPGE--FVAIVGPSGSGKSTLLRLLLG-FETPESGSVFYDGQDLA----------GLDVQAVRRQLGVVLQN  535 (686)
T ss_pred             eeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCEEcC----------cCCHHHHHhccEEEccC
Confidence            333333344443  399999999999999999998 77888899988887554          11110011122222222


Q ss_pred             CCCc--------------chhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC
Q 018543          102 AGFQ--------------DRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV  139 (354)
Q Consensus       102 ~~~~--------------~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE~  139 (354)
                      ....              +...+.+.++..     -...|.           .+|+            -.+++++++||+
T Consensus       536 ~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEp  615 (686)
T TIGR03797       536 GRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEA  615 (686)
T ss_pred             CccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            2111              111222222221     001111           1121            147899999998


Q ss_pred             -CcCCHHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543          140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       140 -d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~  172 (354)
                       ..|++.....+.+.+.+.  ...+|++|++.+.
T Consensus       616 TS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~  647 (686)
T TIGR03797       616 TSALDNRTQAIVSESLERL--KVTRIVIAHRLST  647 (686)
T ss_pred             ccCCCHHHHHHHHHHHHHh--CCeEEEEecChHH
Confidence             789999988898888775  2567888887643

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.52  E-value=5e-07  Score=79.18  Aligned_cols=55  Identities=9%  Similarity=0.152  Sum_probs=40.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+++......+|+++++.+ ..+.+.+|+.++
T Consensus       165 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~-~~~~~~d~i~~l  220 (252)
T PRK14256        165 VKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQ-QAARVSDYTAFF  220 (252)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHH-HHHhhCCEEEEE
Confidence            47899999997 88999999999999987755555666666544 444566666443

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.51  E-value=2.9e-07  Score=99.86  Aligned_cols=135  Identities=16%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHH-----
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ-----  111 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~-----  111 (354)
                      +.|.||+|+||||+.+++++ +..++.|.+.+++....  .....         ....+.+.++.....+..+++     
T Consensus      1968 ~gLLG~NGAGKTTLlkmL~G-ll~ptsG~I~i~G~~i~--~~~~~---------~r~~IGy~pQ~~~L~~~LTv~E~L~l 2035 (2272)
T TIGR01257      1968 FGLLGVNGAGKTTTFKMLTG-DTTVTSGDATVAGKSIL--TNISD---------VHQNMGYCPQFDAIDDLLTGREHLYL 2035 (2272)
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCEECc--chHHH---------HhhhEEEEeccccCCCCCCHHHHHHH
Confidence            88999999999999999998 55778888888776442  00000         001123322222111111111     


Q ss_pred             -----------------HHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543          112 -----------------EVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       112 -----------------~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~  156 (354)
                                       ++++.+.     ......+++            .++++|+++||+ ..|++.....+.+.+.+
T Consensus      2036 ~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257      2036 YARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence                             1221110     111111121            157899999998 88999999999999977


Q ss_pred             cc-CceeEEEEecCCCcccHHHhhhccee
Q 018543          157 YS-ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       157 ~~-~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .. .+..+|++|++ ....+.+.+|..++
T Consensus      2116 l~~~g~TIILtTH~-mee~e~lcDrV~IL 2143 (2272)
T TIGR01257      2116 IIREGRAVVLTSHS-MEECEALCTRLAIM 2143 (2272)
T ss_pred             HHhCCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence            53 33445555554 44456777776544

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.51  E-value=3.9e-07  Score=80.64  Aligned_cols=56  Identities=9%  Similarity=0.150  Sum_probs=40.0

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcceee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~  185 (354)
                      .+++++++||+ ..|++.....+.+.+.+......+|+++++.+ ....+.+|..++.
T Consensus       171 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~  227 (269)
T PRK14259        171 IEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQ-QAVRVSDMTAFFN  227 (269)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence            47899999998 78999999999999987654555666666543 3345555554444

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.51  E-value=7.2e-07  Score=78.87  Aligned_cols=54  Identities=11%  Similarity=0.204  Sum_probs=39.0

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|+......+.+.|.+......+|+++++.+ ....+.+|+.+
T Consensus       180 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~-~~~~~~d~v~~  234 (267)
T PRK14235        180 VSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQ-QAARVSQRTAF  234 (267)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHH-HHHhhCCEEEE
Confidence            47899999997 88999999999999977655555666666644 33445555533

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.51  E-value=1.8e-07  Score=90.62  Aligned_cols=158  Identities=13%  Similarity=0.164  Sum_probs=81.5

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC---------
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA---------   92 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   92 (354)
                      .+.+.-.+..|..  +.|.||+|+||||+++++++ +..++.+.+.+++..+....+.......+..+.+.         
T Consensus        21 l~~vs~~i~~Ge~--~~liG~nGsGKSTLl~~i~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv   97 (510)
T PRK09700         21 LKSVNLTVYPGEI--HALLGENGAGKSTLMKVLSG-IHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTV   97 (510)
T ss_pred             eeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcC-CcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcH
Confidence            3444444455554  89999999999999999998 55677777777765432000000000001111000         


Q ss_pred             -ceeeeCCCC----CCC---cc---hhHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCC
Q 018543           93 -NHVELSPSD----AGF---QD---RYVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLS  143 (354)
Q Consensus        93 -~~i~~~~~~----~~~---~~---~~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~  143 (354)
                       +.+.+....    .+.   ..   ...+.+.++.+.-.     .+..+|+            ..+++++++||+ ..|+
T Consensus        98 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD  177 (510)
T PRK09700         98 LENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLT  177 (510)
T ss_pred             HHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence             011110000    000   00   01122333322111     0111221            157899999998 8899


Q ss_pred             HHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcce
Q 018543          144 REAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       144 ~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +.....+.+.+.+... +..+|+++++ ......+.+|+.+
T Consensus       178 ~~~~~~l~~~l~~l~~~g~tiiivsHd-~~~~~~~~d~v~~  217 (510)
T PRK09700        178 NKEVDYLFLIMNQLRKEGTAIVYISHK-LAEIRRICDRYTV  217 (510)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEE
Confidence            9999999998876543 3445555554 4444556666543

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.50  E-value=5.7e-07  Score=78.90  Aligned_cols=55  Identities=13%  Similarity=0.180  Sum_probs=39.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+...+..+|+++++.+ ....+.+|+.++
T Consensus       166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~-~~~~~~d~v~~l  221 (253)
T PRK14242        166 VEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQ-QAARVSDVTAFF  221 (253)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHH-HHHHhCCEEEEE
Confidence            47899999997 78999999999999977644445555555543 345556666444

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.50  E-value=4.4e-07  Score=77.38  Aligned_cols=53  Identities=6%  Similarity=-0.028  Sum_probs=34.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .+++++++||+ ..+++.....+.+.+.+......+|+++++.. ....+.+|+.
T Consensus       121 ~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~-~~~~~~d~i~  174 (213)
T PRK15177        121 LPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPR-LIKEHCHAFG  174 (213)
T ss_pred             cCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHH-HHHHhcCeeE
Confidence            47799999996 88888888888887643222234566655553 3444555553

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.50  E-value=2.2e-07  Score=91.10  Aligned_cols=142  Identities=15%  Similarity=0.274  Sum_probs=78.7

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccCce-------
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSANH-------   94 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------   94 (354)
                      +.+.-.++.|.  .+.+.||+|+||||+++.+++ ++.+..+.+.+++.+..  ...... ...+..+.+..+       
T Consensus       332 ~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g-~~~p~~G~i~~~g~~~~--~~~~~~~~~~i~~v~q~~~lf~~ti~  406 (569)
T PRK10789        332 ENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQR-HFDVSEGDIRFHDIPLT--KLQLDSWRSRLAVVSQTPFLFSDTVA  406 (569)
T ss_pred             cCeeEEECCCC--EEEEECCCCCCHHHHHHHHhc-ccCCCCCEEEECCEEHh--hCCHHHHHhheEEEccCCeeccccHH
Confidence            33333344443  399999999999999999998 67888888888776543  100000 000111111111       


Q ss_pred             --eeeCCCCCCCcchhHHHHHHHH------HHhcC----------CCCCCC------------CCCceEEEEeCC-CcCC
Q 018543           95 --VELSPSDAGFQDRYVVQEVIKE------MAKNR----------PIDTKG------------KRGFKVLVLNEV-DKLS  143 (354)
Q Consensus        95 --i~~~~~~~~~~~~~~i~~~~~~------~~~~~----------~~~~~~------------~~~~~viiiDE~-d~l~  143 (354)
                        +.+...  .. ....+.+.++.      +...+          ...+++            ..+++++++||+ ..++
T Consensus       407 ~Ni~~~~~--~~-~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD  483 (569)
T PRK10789        407 NNIALGRP--DA-TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD  483 (569)
T ss_pred             HHHhcCCC--CC-CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence              111100  01 11122222221      11110          001121            147899999998 7799


Q ss_pred             HHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543          144 REAQHSLRRTMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       144 ~~~~~~Ll~~le~~~~~~~~Il~~~~~~~  172 (354)
                      +.....+.+.+.+...+..+|+++++.+.
T Consensus       484 ~~~~~~i~~~l~~~~~~~tii~itH~~~~  512 (569)
T PRK10789        484 GRTEHQILHNLRQWGEGRTVIISAHRLSA  512 (569)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecchhH
Confidence            99988898888776556678888887643

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.50  E-value=5.4e-07  Score=78.95  Aligned_cols=55  Identities=7%  Similarity=0.123  Sum_probs=40.0

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+......+|++|++. .....+.+|+.++
T Consensus       164 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~-~~~~~~~d~v~~l  219 (251)
T PRK14270        164 VKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNM-QQASRVSDYTAFF  219 (251)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCH-HHHHHhcCEEEEE
Confidence            47899999997 8899999999999997765455566666654 3445566676443

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.50  E-value=6.1e-07  Score=78.58  Aligned_cols=54  Identities=15%  Similarity=0.193  Sum_probs=39.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|+......+.+.+.+......+|+++++.+ ....+.+|+.+
T Consensus       163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~-~~~~~~d~i~~  217 (250)
T PRK14262        163 VEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIG-QAIRIADYIAF  217 (250)
T ss_pred             CCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhCCEEEE
Confidence            47899999997 78999999999999977655555666666654 33455566543

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.50  E-value=6.4e-07  Score=78.58  Aligned_cols=54  Identities=11%  Similarity=0.155  Sum_probs=39.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|+......+.+.+.+......+|+++++.+. .+.+.+|+.+
T Consensus       166 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~-~~~~~d~v~~  220 (253)
T PRK14261        166 VNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQ-AARVSDYTGF  220 (253)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHH-HHhhCCEEEE
Confidence            47899999997 889999999999999776555556666665543 3445566543

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.50  E-value=6.2e-07  Score=78.96  Aligned_cols=55  Identities=9%  Similarity=0.183  Sum_probs=40.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+...+..+|+++++.+ ....+.+|+.++
T Consensus       172 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~-~~~~~~d~i~~l  227 (259)
T PRK14274        172 TNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQ-QAARVSDQTAFF  227 (259)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhCCEEEEE
Confidence            47899999998 78999999999999987655556666666654 334455665443

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.50  E-value=1.4e-07  Score=90.82  Aligned_cols=156  Identities=15%  Similarity=0.089  Sum_probs=80.2

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee-----
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV-----   95 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----   95 (354)
                      +.+.+.-.+..|..  +.|.||+|+||||+++++++ +..++.+.+.+++............ ..+....+....     
T Consensus        18 il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~G-~~~p~~G~i~~~~~~~~~~~~~~~~-~~i~~~~q~~~~~~~~~   93 (490)
T PRK10938         18 TLQLPSLTLNAGDS--WAFVGANGSGKSALARALAG-ELPLLSGERQSQFSHITRLSFEQLQ-KLVSDEWQRNNTDMLSP   93 (490)
T ss_pred             ecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhc-cCCCCCceEEECCcccccCCHHHHH-HHhceeccCcchhhccc
Confidence            44445445555655  99999999999999999998 5566667666554322100000000 000000000000     


Q ss_pred             -----eeCCCCC---CCcchhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHH
Q 018543           96 -----ELSPSDA---GFQDRYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (354)
Q Consensus        96 -----~~~~~~~---~~~~~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (354)
                           .....+.   +......+.+.++.+.     ...+..+|+            ..+++++++||+ ..|++.....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~  173 (490)
T PRK10938         94 GEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ  173 (490)
T ss_pred             chhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence                 0000000   0000112233333321     111112221            147899999998 7899999999


Q ss_pred             HHHHHhhccC-ceeEEEEecCCCcccHHHhhhc
Q 018543          150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC  181 (354)
Q Consensus       150 Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~  181 (354)
                      +.+.+.+... +..+|+++++.+ ....+.+|.
T Consensus       174 l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v  205 (490)
T PRK10938        174 LAELLASLHQSGITLVLVLNRFD-EIPDFVQFA  205 (490)
T ss_pred             HHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEE
Confidence            9999977543 345666665543 334555554

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.50  E-value=6.4e-07  Score=78.53  Aligned_cols=55  Identities=9%  Similarity=0.154  Sum_probs=40.0

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+......+.+.+.+......+|+++++.+ ....+.+|+.++
T Consensus       165 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  220 (252)
T PRK14272        165 VEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH-QAARVSDTTSFF  220 (252)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence            47899999997 78999999999999977655555666666554 445566666443

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=3.5e-07  Score=81.43  Aligned_cols=157  Identities=18%  Similarity=0.258  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc-c-ccccccccccCc-----
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-N-IDLELTTLSSAN-----   93 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~-----   93 (354)
                      +.+.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++....  .... . ....+..+.+..     
T Consensus        25 vl~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~i~g~~i~--~~~~~~~~~~~i~~v~q~~~~~~~   99 (280)
T PRK13633         25 ALDDVNLEVKKGEF--LVILGRNGSGKSTIAKHMNA-LLIPSEGKVYVDGLDTS--DEENLWDIRNKAGMVFQNPDNQIV   99 (280)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEecc--ccccHHHHhhheEEEecChhhhhc
Confidence            33444444445544  89999999999999999998 55677788888776443  1000 0 000000110000     


Q ss_pred             ------eeeeCCCCCCCcc---hhHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543           94 ------HVELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (354)
Q Consensus        94 ------~i~~~~~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~------------~~~~~viiiDE~-d~l~~~~  146 (354)
                            .+.+.....+...   ...+.+.++.+.     ...+..+|+            ..+++++++||+ ..|++..
T Consensus       100 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~  179 (280)
T PRK13633        100 ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSG  179 (280)
T ss_pred             cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence                  0000000001110   011222222211     111112221            157899999998 7899999


Q ss_pred             HHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       147 ~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +..+++.+.+...  +..+|+++++.+.+ .. .+|+.++
T Consensus       180 ~~~l~~~l~~l~~~~g~tillvtH~~~~~-~~-~d~v~~l  217 (280)
T PRK13633        180 RREVVNTIKELNKKYGITIILITHYMEEA-VE-ADRIIVM  217 (280)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecChHHH-hc-CCEEEEE
Confidence            9999999977532  45677777776654 33 5666443

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.49  E-value=2.1e-07  Score=91.65  Aligned_cols=145  Identities=14%  Similarity=0.248  Sum_probs=78.1

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee-----e-
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV-----E-   96 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~-   96 (354)
                      +.+.-.++.|+.  +.+.||+|+||||+++.+++ ++.+..+.+.+++.+...-.+... .-.+..+.+..++     . 
T Consensus       357 ~~inl~i~~Ge~--i~IvG~sGsGKSTLlklL~g-l~~p~~G~I~i~g~~i~~~~~~~~-~~~i~~~~Q~~~lf~~Ti~~  432 (576)
T TIGR02204       357 DGLNLTVRPGET--VALVGPSGAGKSTLFQLLLR-FYDPQSGRILLDGVDLRQLDPAEL-RARMALVPQDPVLFAASVME  432 (576)
T ss_pred             cceeEEecCCCE--EEEECCCCCCHHHHHHHHHh-ccCCCCCEEEECCEEHHhcCHHHH-HHhceEEccCCccccccHHH
Confidence            333333444443  99999999999999999998 667888888887754430000000 0011111111100     0 


Q ss_pred             -eCCCCCCCcchhHHHHHHHHH------HhcC-CC---------CCCC------------CCCceEEEEeCC-CcCCHHH
Q 018543           97 -LSPSDAGFQDRYVVQEVIKEM------AKNR-PI---------DTKG------------KRGFKVLVLNEV-DKLSREA  146 (354)
Q Consensus        97 -~~~~~~~~~~~~~i~~~~~~~------~~~~-~~---------~~~~------------~~~~~viiiDE~-d~l~~~~  146 (354)
                       +....... +...+.+.++..      ...+ ..         .+++            ..+++++++||+ ..+++..
T Consensus       433 Ni~~~~~~~-~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~  511 (576)
T TIGR02204       433 NIRYGRPDA-TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES  511 (576)
T ss_pred             HHhcCCCCC-CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence             00000000 111222222211      1110 00         1111            146789999998 7889988


Q ss_pred             HHHHHHHHhhccCceeEEEEecCCCc
Q 018543          147 QHSLRRTMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       147 ~~~Ll~~le~~~~~~~~Il~~~~~~~  172 (354)
                      ...+.+.+.+..++..+|++|++++.
T Consensus       512 ~~~i~~~l~~~~~~~t~IiitH~~~~  537 (576)
T TIGR02204       512 EQLVQQALETLMKGRTTLIIAHRLAT  537 (576)
T ss_pred             HHHHHHHHHHHhCCCEEEEEecchHH
Confidence            88888888776556778888888743

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.49  E-value=6e-07  Score=79.39  Aligned_cols=54  Identities=13%  Similarity=0.129  Sum_probs=39.6

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++.....+.+.+.+......+|+++++.+ ....+.+|+.+
T Consensus       180 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~-~~~~~~d~i~~  234 (267)
T PRK14237        180 VKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQ-QAARASDYTAF  234 (267)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCEEEE
Confidence            47899999997 78999999999999877655555666666554 44555666543

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=98.49  E-value=9.8e-07  Score=77.77  Aligned_cols=77  Identities=12%  Similarity=0.198  Sum_probs=48.0

Q ss_pred             CCCceEEEEeCCCcCCHH------HHHHHHHHHhhc------------cCceeEEEEecCCC---cccHHHhhhcceeee
Q 018543          128 KRGFKVLVLNEVDKLSRE------AQHSLRRTMEKY------------SASCRLILCCNSSS---KVTEAIRSRCLNIRI  186 (354)
Q Consensus       128 ~~~~~viiiDE~d~l~~~------~~~~Ll~~le~~------------~~~~~~Il~~~~~~---~l~~~l~sR~~~i~~  186 (354)
                      .++.-|++|||++.-.++      ..+.|++.++..            -.++.+|.+++...   .+.+.+.+.+.++.+
T Consensus        98 ~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~  177 (272)
T PF12775_consen   98 GGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNI  177 (272)
T ss_dssp             SSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE-
T ss_pred             CCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEe
Confidence            356679999998754332      234556666431            13455776665432   478888888999999


Q ss_pred             cCCCHHHHHHHHHHHHHH
Q 018543          187 NSPTEEQIVKVLEFIAKK  204 (354)
Q Consensus       187 ~~~~~~~~~~~L~~~~~~  204 (354)
                      +.|+.+.+..+...++..
T Consensus       178 ~~p~~~sl~~If~~il~~  195 (272)
T PF12775_consen  178 PYPSDESLNTIFSSILQS  195 (272)
T ss_dssp             ---TCCHHHHHHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHhh
Confidence            999999999988877653

>PLN03130 ABC transporter C family member; Provisional

Probab=98.49  E-value=9.2e-08  Score=103.27  Aligned_cols=146  Identities=14%  Similarity=0.265  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (354)
                      +.+.+.-.++.|+.  +-|+|++|+||||+++.+.+ ++.+..|.+.+|+.+..          ++....-...+.+.++
T Consensus      1254 VL~~is~~I~~Gek--VaIVGrSGSGKSTLl~lL~r-l~~p~~G~I~IDG~dI~----------~i~l~~LR~~IsiVpQ 1320 (1622)
T PLN03130       1254 VLHGLSFEISPSEK--VGIVGRTGAGKSSMLNALFR-IVELERGRILIDGCDIS----------KFGLMDLRKVLGIIPQ 1320 (1622)
T ss_pred             eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhC-cCCCCCceEEECCEecc----------cCCHHHHHhccEEECC
Confidence            44445545555544  99999999999999999998 77888899999987654          1111111122333333


Q ss_pred             CCCCc--------------chhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeC
Q 018543          101 DAGFQ--------------DRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNE  138 (354)
Q Consensus       101 ~~~~~--------------~~~~i~~~~~~~-----~~~~~~-----------~~~~------------~~~~~viiiDE  138 (354)
                      +.-..              ....+.+.++..     -...|.           ++++            -.+++|+|+||
T Consensus      1321 dp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDE 1400 (1622)
T PLN03130       1321 APVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDE 1400 (1622)
T ss_pred             CCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            32111              111222222221     111111           1111            14679999999


Q ss_pred             C-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhc
Q 018543          139 V-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (354)
Q Consensus       139 ~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~  181 (354)
                      + -.++.+....+.+.+.+...++.+|+++++.+.+..  .+|+
T Consensus      1401 ATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~--~DrI 1442 (1622)
T PLN03130       1401 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID--CDRI 1442 (1622)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh--CCEE
Confidence            8 678888888888888776667889999998876543  3454

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=2.6e-07  Score=89.31  Aligned_cols=158  Identities=15%  Similarity=0.179  Sum_probs=80.9

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCC--CCcccccccccccccCCCccccccccccccC------
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGSRNIDLELTTLSSA------   92 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   92 (354)
                      +.+.+.-.+..|..  +.|.||+|+||||+++++++ +..+  ..+.+.+++..+............+..+.+.      
T Consensus        20 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~   96 (506)
T PRK13549         20 ALDNVSLKVRAGEI--VSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE   96 (506)
T ss_pred             eecceeEEEeCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence            33444444455544  89999999999999999998 4443  5777777765432000000000001111110      


Q ss_pred             ----ceeeeCCCCC--CCcch----hHHHHHHHHHHhcC-----CCCCCC------------CCCceEEEEeCC-CcCCH
Q 018543           93 ----NHVELSPSDA--GFQDR----YVVQEVIKEMAKNR-----PIDTKG------------KRGFKVLVLNEV-DKLSR  144 (354)
Q Consensus        93 ----~~i~~~~~~~--~~~~~----~~i~~~~~~~~~~~-----~~~~~~------------~~~~~viiiDE~-d~l~~  144 (354)
                          +.+.+.....  +....    ..+.+.++.+.-..     ...+|+            ..+++++++||+ ..|++
T Consensus        97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~  176 (506)
T PRK13549         97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE  176 (506)
T ss_pred             CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence                1111110000  00010    12333333322110     001111            147899999998 78999


Q ss_pred             HHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhcc
Q 018543          145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       145 ~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .....+.+.+.+... +..+|+++++. .....+.+|+.
T Consensus       177 ~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~  214 (506)
T PRK13549        177 SETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTIC  214 (506)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEE
Confidence            999999999876533 34455555554 34445556653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	354
1sxj_E	354	Crystal Structure Of The Eukaryotic Clamp Loader (R		7e-59
1iqp_A	327	Crystal Structure Of The Clamp Loader Small Subunit		2e-36
2chq_A	319	Replication Factor C Adpnp Complex Length = 319		1e-35
2chg_A	226	Replication Factor C Domains 1 And 2 Length = 226		1e-35
1sxj_D	353	Crystal Structure Of The Eukaryotic Clamp Loader (R		4e-31
1sxj_C	340	Crystal Structure Of The Eukaryotic Clamp Loader (R		1e-30
1sxj_B	323	Crystal Structure Of The Eukaryotic Clamp Loader (R		3e-20
3u5z_B	324	Structure Of T4 Bacteriophage Clamp Loader Bound To		5e-14
1njg_A	250	Nucleotide-Free Form Of An Isolated E. Coli Clamp L		6e-07
3glf_B	395	Crystal Structure Of The Ecoli Clamp Loader Bound T		6e-07
1xxi_B	368	Adp Bound E. Coli Clamp Loader Complex Length = 368		7e-07
3glh_B	376	Crystal Structure Of The E. Coli Clamp Loader Bound		8e-07
1jr3_A	373	Crystal Structure Of The Processivity Clamp Loader		8e-07
3glg_B	395	Crystal Structure Of A Mutant (Gammat157a) E. Coli		1e-06
1ixr_C	312	Ruva-Ruvb Complex Length = 312		4e-04
1ixs_B	318	Structure Of Ruvb Complexed With Ruva Domain Iii Le		5e-04
1hqc_A	324	Structure Of Ruvb From Thermus Thermophilus Hb8 Len		7e-04

>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 354

Iteration: 1
 Score =  224 bits (570), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 204/351 (58%), Gaps = 13/351 (3%)
Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           LWVDKYRPK+L+ +  ++++   LK L  + +D PHLL YGP G+GKKT  MALL  +FG
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PG  ++K++ + + + A +R   LEL  +SS  H+E++PSD G  DR V+QE++KE+A+ 
Sbjct: 63  PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
             +D +  +      +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +  
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
            I+S+CL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+
Sbjct: 180 PIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
Query: 235 CRV-QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXX--XXXXXX 291
             +  +   K +  I   DW   + ++   I++E+S   L + R  LY+           
Sbjct: 240 MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANII 299
Query: 292 XXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 342
                         +   K  +  +++ ++ ++  GNKAIFHLE F+AK M
Sbjct: 300 LKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 350

>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 124/227 (54%), Gaps = 32/227 (14%)
Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+ LD ++  + I + LK  V     PHLLF GPPG GK T  +AL R++FG  
Sbjct: 15  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG-- 72
Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                   + W+                  N +EL+ SD   +   V++E +KE A+ +P
Sbjct: 73  --------ENWR-----------------HNFLELNASDE--RGINVIREKVKEFARTKP 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
           I   G   FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SRC 
Sbjct: 106 I---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
             R     +E I K L +IA+ EGL+L       +   +   +RRAI
Sbjct: 163 IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI 209

>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex Length = 319

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+V+   ++ Q LK  V  ++ PHLLF GPPG+GK    +AL R +FG 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG- 64
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                    + W+                  N +E++ SD    D  VV+  IKE A+  
Sbjct: 65  ---------ENWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           PI   G   FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN  S++ E I+SRC
Sbjct: 97  PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R     +E + K L  I +KEG+++       L   S    R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201

>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2 Length = 226

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+V+   ++ Q LK  V  ++ PHLLF GPPG+GK    +AL R +FG 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG- 64
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                    + W+                  N +E++ SD    D  VV+  IKE A+  
Sbjct: 65  ---------ENWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           PI   G   FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN  S++ E I+SRC
Sbjct: 97  PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R     +E + K L  I +KEG+++       L   S    R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201

>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 353

Iteration: 1
 Score =  132 bits (331), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 133/272 (48%), Gaps = 35/272 (12%)
Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRPK LD+V         LKK +   + PH+LFYGPPG+GK + I+AL ++++GP 
Sbjct: 27  WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
             K ++                          +EL+ SD   +   +V+E +K  A+   
Sbjct: 87  LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
           ++P    ++      +K+++L+E D ++ +AQ +LRRTME YS   R  L CN  +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
            + S+C   R  +      +  L FI+++E ++   G   R+ + S   LRR I   ++ 
Sbjct: 179 PLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSA 238
Query: 236 RVQQYPFKDNQAIPAMDWEEFVFEIASDIMQE 267
                   D + I +   EE    +  DI+ E
Sbjct: 239 SKGAQYLGDGKNITSTQVEELAGVVPHDILIE 270

>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 340

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 32/234 (13%)
Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+TLD+V    ++   ++K V E   PHLLFYGPPG+GK + I+AL R+++G  
Sbjct: 15  WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-- 72
Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                   K +       N+ LEL           +  D G     VV+  IK+ A  R 
Sbjct: 73  --------KNYS------NMVLELN----------ASDDRGID---VVRNQIKDFASTRQ 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
           I +K   GFK+++L+E D ++  AQ++LRR +E+Y+ + R  +  N + K+T A+ S+C 
Sbjct: 106 IFSK---GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
             R     +E I + +  +   E L+L       L E SN  +RR +   ++C+
Sbjct: 163 RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216

>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 323

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 33/234 (14%)
Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+ L  ++ +++    L+++  + + PH++  G PG GK T +  L  ++ G  
Sbjct: 11  WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR- 69
Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNR 121
                                      S A+ V EL+ SD    D  VV+  IK  A+ +
Sbjct: 70  ---------------------------SYADGVLELNASDDRGID--VVRNQIKHFAQKK 100
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                GK   K+++L+E D ++  AQ +LRRTME YS S R    CN S+K+ E ++S+C
Sbjct: 101 LHLPPGKH--KIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
             +R +  ++E ++K L  I K E ++  +     +   +   +R+AI + ++ 
Sbjct: 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 212

>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4 Clamp, Primer-Template Dna, And Atp Analog Length = 324

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 48/213 (22%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGP-PGSGKKTLIMALLRQVFGPGAE 64
           KYRP T+D+ I+     +  K + ++   PH++ + P PG+GK T+  AL   V    A+
Sbjct: 19  KYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---NAD 75
Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
            + V     KID     +   LT  +SA         A F  R                 
Sbjct: 76  MMFVNGSDCKIDF----VRGPLTNFASA---------ASFDGRQ---------------- 106
Query: 125 TKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
                  KV+V++E D+    E+Q  LR  ME YS++C +I+  N+   + + ++SRC  
Sbjct: 107 -------KVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159
Query: 184 IRINSPTEE-------QIVKVLEFIAKKEGLQL 209
           I    PT+E       Q+++ L  I K EG+ +
Sbjct: 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI 192

>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader Gamma Subunit Length = 250

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 103/250 (41%), Gaps = 22/250 (8%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 16  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 75
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 76  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 126
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 127 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 177
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
           L   + +   EQI   LE I  +E +         LA  +  SLR A+   +        
Sbjct: 178 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 237
Query: 242 FKDNQAIPAM 251
               QA+ AM
Sbjct: 238 QVSTQAVSAM 247

>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer-template Dna Length = 395

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 31  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 90
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 91  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 142 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 193 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 240

>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex Length = 368

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 9   KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 69  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 120 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 218

>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide Length = 376

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 12  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 71
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 72  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 122
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 123 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 173
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 174 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 221

>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii Length = 373

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 9   KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 69  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 120 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 218

>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna Length = 395

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 31  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 90
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 91  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 142 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 193 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 240

>pdb|1IXR|C Chain C, Ruva-Ruvb Complex Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMAL-------L 55
          RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL   +       L
Sbjct: 7  RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 56 RQVFGPGAEK 65
          R   GP  EK
Sbjct: 67 RVTSGPAIEK 76

>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMAL-------L 55
          RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL   +       L
Sbjct: 7  RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 56 RQVFGPGAEK 65
          R   GP  EK
Sbjct: 67 RVTSGPAIEK 76

>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8 Length = 324

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMAL-------L 55
          RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL   +       L
Sbjct: 7  RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 56 RQVFGPGAEK 65
          R   GP  EK
Sbjct: 67 RVTSGPAIEK 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	354
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	1e-137
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	1e-113
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	2e-99
2chq_A	319	Replication factor C small subunit; DNA-binding pr	2e-66
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	3e-62
2chg_A	226	Replication factor C small subunit; DNA-binding pr	4e-62
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	4e-58
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	3e-47
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	4e-47
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	3e-15
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	6e-10
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	9e-10
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	8e-07
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	5e-06
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	3e-05
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	3e-05
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	3e-05
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	3e-05
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	5e-05
3pvs_A	447	Replication-associated recombination protein A; ma	1e-04
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	1e-04
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	1e-04
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	2e-04
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	8e-04

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354

 Score =  394 bits (1013), Expect = e-137
 Identities = 132/353 (37%), Positives = 217/353 (61%), Gaps = 13/353 (3%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           LWVDKYRPK+L+ +  ++++   LK L  + +D PHLL YGP G+GKKT  MALL  +FG
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PG  ++K++ + +     + N  LEL  +SS  H+E++PSD G  DR V+QE++KE+A+ 
Sbjct: 63  PGVYRLKIDVRQFV---TASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119

Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
             +D +  +      +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +  
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179

Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
            I+S+CL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+
Sbjct: 180 PIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239

Query: 235 CRVQ-QYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVV 293
             +  +   K +  I   DW   + ++   I++E+S   L + R  LY+LL +C+P  ++
Sbjct: 240 MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANII 299

Query: 294 LKRLLYELLK--RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344
           LK L + LL    L+   K  +  +++ ++ ++  GNKAIFHLE F+AK M  
Sbjct: 300 LKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCC 352

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 353

 Score =  333 bits (856), Expect = e-113
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 27/350 (7%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             WV+KYRPK LD+V         LKK +   + PH+LFYGPPG+GK + I+AL ++++G
Sbjct: 25  QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P   K ++               LEL   S    + +         R  V +  K     
Sbjct: 85  PDLMKSRI---------------LELNA-SDERGISIVREKVKNFARLTVSKPSK----- 123

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
             ++      +K+++L+E D ++ +AQ +LRRTME YS   R  L CN  +++ + + S+
Sbjct: 124 HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           C   R  +      +  L FI+++E ++   G   R+ + S   LRR I   ++      
Sbjct: 184 CSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQ 243

Query: 241 PFKDNQAIPAMDWEEFVF----EIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKR 296
              D + I +   EE       +I  +I+++       +++  +   + +      V+ +
Sbjct: 244 YLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQ 303

Query: 297 LLYELLKR--LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344
           L    +     D   K+++       + ++  G      L   + K   +
Sbjct: 304 LHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQL 353

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327

 Score =  296 bits (759), Expect = 2e-99
 Identities = 110/348 (31%), Positives = 163/348 (46%), Gaps = 36/348 (10%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             WV+KYRP+ LD ++  + I + LK  V     PHLLF GPPG GK T  +AL R++FG
Sbjct: 13  KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG 72

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                       W+                  N +EL+ SD    +  V++E +KE A+ 
Sbjct: 73  EN----------WR-----------------HNFLELNASDERGIN--VIREKVKEFART 103

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           +PI   G   FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SR
Sbjct: 104 KPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           C   R     +E I K L +IA+ EGL+L       +   +   +RRAI   +       
Sbjct: 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK 220

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLN-CVPPVVVLKRLLY 299
              D      M       E   ++M         + R KL E+LL   +    VL ++  
Sbjct: 221 KITDENVF--MVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHK 278

Query: 300 ELLK-RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYK 346
           E+    ++   K  +      Y  ++  G   I  LEA +A+F  I K
Sbjct: 279 EVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLIGK 326

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319

 Score =  211 bits (539), Expect = 2e-66
 Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 52/355 (14%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+V+   ++ Q LK  V  ++ PHLLF GPPG+GK    +AL R +FG 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                      W+                  N +E++ SD    D  VV+  IKE A+  
Sbjct: 66  ----------NWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           PI       FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN  S++ E I+SRC
Sbjct: 97  PIGGAP---FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
              R     +E + K L  I +KEG+++       L   S    R+AI + +        
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGA------ 207

Query: 242 FKDNQAIPAMDWEEFVFEIAS--------DIMQEQSPKRLFQVRGKLYELLLNCVPPVVV 293
               + +      + +++I +        +++Q        + R  L  L++        
Sbjct: 208 AAIGEVVD----ADTIYQITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGED 263

Query: 294 LKRLLYELLKR--LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYK 346
           +   L+  +    +   +K ++       + ++  G      L+A++A   ++ K
Sbjct: 264 IVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTLAK 318

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340

 Score =  201 bits (513), Expect = 3e-62
 Identities = 84/357 (23%), Positives = 155/357 (43%), Gaps = 48/357 (13%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           + WV+KYRP+TLD+V    ++   ++K V E   PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 13  LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                       +                     +EL+ SD    D  VV+  IK+ A  
Sbjct: 73  K----------NYS-----------------NMVLELNASDDRGID--VVRNQIKDFAST 103

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           R I     +GFK+++L+E D ++  AQ++LRR +E+Y+ + R  +  N + K+T A+ S+
Sbjct: 104 RQI---FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           C   R     +E I + +  +   E L+L       L E SN  +RR +       +Q  
Sbjct: 161 CTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNV-----LQSC 215

Query: 241 PFKDNQAIPAMDWEEFVFEIAS--------DIMQEQSPKRLFQVRGKLYELLLNCVPPVV 292
               +        ++ ++E            +++             L ++       ++
Sbjct: 216 KATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALI 275

Query: 293 VLKRLLYELLKRLD---AEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYK 346
            L   + ++L+  +    E +  +    A  E+ + +G        A +    + ++
Sbjct: 276 DLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASFE 332

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226

 Score =  197 bits (503), Expect = 4e-62
 Identities = 85/228 (37%), Positives = 118/228 (51%), Gaps = 32/228 (14%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+V+   ++ Q LK  V  ++ PHLLF GPPG+GK    +AL R +FG 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                                          N +E++ SD    D  VV+  IKE A+  
Sbjct: 66  ---------------------------NWRDNFIEMNASDERGID--VVRHKIKEFARTA 96

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           PI       FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN  S++ E I+SRC
Sbjct: 97  PIGGAP---FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R     +E + K L  I +KEG+++       L   S    R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323

 Score =  189 bits (483), Expect = 4e-58
 Identities = 74/354 (20%), Positives = 145/354 (40%), Gaps = 49/354 (13%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           + WV+KYRP+ L  ++ +++    L+++  + + PH++  G PG GK T +  L  ++ G
Sbjct: 9   LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                      ++                     +EL+ SD    D  VV+  IK  A+ 
Sbjct: 69  R----------SYA-----------------DGVLELNASDDRGID--VVRNQIKHFAQK 99

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           +     GK   K+++L+E D ++  AQ +LRRTME YS S R    CN S+K+ E ++S+
Sbjct: 100 KLHLPPGK--HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           C  +R +  ++E ++K L  I K E ++  +     +   +   +R+AI + ++      
Sbjct: 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST----- 212

Query: 241 PFKDNQAIPAMDWEEFVFEIA-----SDIMQEQSPKRLFQVRGKLYELLLN-CVPPVVVL 294
               +  +      + VF+I        + +      L      L   L       + ++
Sbjct: 213 -VAGHGLVN----ADNVFKIVDSPHPLIVKKMLLASNLEDSIQILRTDLWKKGYSSIDIV 267

Query: 295 KRLLYELLKR--LDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYK 346
                       +   ++ E+         ++  G      L + +AK   +  
Sbjct: 268 TTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLNN 321

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Length = 324

 Score =  161 bits (410), Expect = 3e-47
 Identities = 69/361 (19%), Positives = 131/361 (36%), Gaps = 73/361 (20%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGP-PGSGKKTLIMALLRQVF 59
            +   KYRP T+D+ I+     +  K + ++   PH++ + P PG+GK T+  AL   V 
Sbjct: 14  HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73

Query: 60  GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
                          ++     ID                          V+  +   A 
Sbjct: 74  ADMMF----------VNGSDCKID-------------------------FVRGPLTNFAS 98

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
               D +     KV+V++E D+    E+Q  LR  ME YS++C +I+  N+   + + ++
Sbjct: 99  AASFDGR----QKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ 154

Query: 179 SRCLNIRINSPTEE-------QIVKVLEFIAKKEGLQL--PSGFATRLAEKSNRSLRRAI 229
           SRC  I    PT+E       Q+++ L  I K EG+ +      A  L +K+    R+ I
Sbjct: 155 SRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAA-LVKKNFPDFRKTI 213

Query: 230 LSFETCRVQQYPFKDNQAIPAMDWEEFVFEIAS------DIMQEQSPKRLFQVRGKLYEL 283
                  +  Y      +   +     +  + +      D+++    K + Q+R    + 
Sbjct: 214 -----GELDSY------SSKGVLDAGILSLVTNDRGAIDDVLESLKNKDVKQLRALAPKY 262

Query: 284 LLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRG-NKAIFHLEAFVAKFM 342
             +       + +L  E+  R+  +    +               N  + HL     +  
Sbjct: 263 AAD---YSWFVGKLAEEIYSRVTPQSIIRMYEIVGENNQYHGIAANTEL-HLAYLFIQLA 318

Query: 343 S 343
            
Sbjct: 319 C 319

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score =  166 bits (421), Expect = 4e-47
 Identities = 56/320 (17%), Positives = 102/320 (31%), Gaps = 73/320 (22%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQD-----------------CPHLLFYGPP 43
            LW  KY P  L QV  ++     LK  +   +                     + YGPP
Sbjct: 27  KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPP 86

Query: 44  GSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG 103
           G GK T    + ++                    G   +             E + SD  
Sbjct: 87  GIGKTTAAHLVAQE-------------------LGYDIL-------------EQNASD-- 112

Query: 104 FQDR--YVVQEVIKEMAKNRPI---------DTKGKRGFKVLVLNEVDKLSREAQHSLRR 152
              R   ++   +K    N  +                  V++++EVD +S   +  + +
Sbjct: 113 --VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQ 170

Query: 153 TMEKYSASCRLILC-CN-SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP 210
             +    +   ++  CN  +          CL+I+   P    I   L  IA +E  +L 
Sbjct: 171 LAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD 230

Query: 211 SGFATRLAEKSNRSLRRAI--LSFETCRVQQYPFKDNQAIPAMDWEEFV----FEIASDI 264
                RL + +   +R+ I  LS       +    +N    +  WE+ +    F+IA  +
Sbjct: 231 PNVIDRLIQTTRGDIRQVINLLST-ISTTTKTINHENINEISKAWEKNIALKPFDIAHKM 289

Query: 265 MQEQSPKRLFQVRGKLYELL 284
           +  Q    +      L + +
Sbjct: 290 LDGQIYSDIGSRNFTLNDKI 309

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 96.1 bits (238), Expect = 7e-22
 Identities = 57/414 (13%), Positives = 126/414 (30%), Gaps = 108/414 (26%)

Query: 4   VDKY---RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             KY   R +   +      + Q L +L   +   ++L  G  GSGK  + + +      
Sbjct: 126 FAKYNVSRLQPYLK------LRQALLEL---RPAKNVLIDGVLGSGKTWVALDVCL---- 172

Query: 61  PGAEKVKVENKT---WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM 117
             + KV+ +      W ++  + N    +  +      ++ P+     D     ++    
Sbjct: 173 --SYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 118 AKNRPIDTKGKRGFK--VLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
            +         + ++  +LVL  V +           +    ++ SC+ IL      +VT
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNA----------KAWNAFNLSCK-ILLTTRFKQVT 278

Query: 175 EAIRS-----RCLNIRINSPTEEQIVKVLEFIAKKEGL---QLP-----------SGFAT 215
           + + +       L+    + T ++   V   + K        LP           S  A 
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 216 RLAEKSNRS----------LRRAI------LSFETCRVQQYP----FKDNQAIPA----M 251
            + +               L   I      L     R + +     F  +  IP     +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSL 394

Query: 252 DWEEFVFEIASDIMQEQSPKRLFQVRGK-----LYELLLNCVPPVVVL----KRLL--YE 300
            W + +      ++ +     L + + K     +  + L     +       + ++  Y 
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 301 LLKRLDAEIKHEVCHWAAY-YEHKMRRGNKAIFHLEAF-----VAKFMSIYKGF 348
           + K  D++      +   Y Y H          HL+       +  F  ++  F
Sbjct: 455 IPKTFDSDDLIPP-YLDQYFYSHIG-------HHLKNIEHPERMTLFRMVFLDF 500

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 2e-08
 Identities = 55/382 (14%), Positives = 117/382 (30%), Gaps = 87/382 (22%)

Query: 19  QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK--VE-----NK 71
           +D+    K ++++++  H++      SG   L   LL +      E V+  VE     N 
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK----QEEMVQKFVEEVLRINY 91

Query: 72  TWKIDA-GSRNIDLELTTLSSANHVELSPSDAG-FQDRYV--------VQEVIKEMAKNR 121
            + +    +      + T       +   +D   F    V        +++ + E+   +
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 122 PIDTKGKRGF-K-VLVLNEVDKLSREAQH-------SLRRTMEKYSASCRLILCCNSSSK 172
            +   G  G  K  + L+       + +        +L+               CNS   
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN--------------CNSPET 197

Query: 173 VTEAIRSRCLNIRIN-----SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS-NRSL- 225
           V E ++     I  N       +    +++    A+   L         L  K     L 
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---------LKSKPYENCLL 248

Query: 226 -------RRAILSFE-TCRV----QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRL 273
                   +A  +F  +C++    +     D   + A        +  S  +     K L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 274 FQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEH----KMRRGNK 329
                K  +     +P  V+        L  +   I+  +  W   ++H    K+    +
Sbjct: 307 L---LKYLDCRPQDLPREVLTTNPR--RLSIIAESIRDGLATW-DNWKHVNCDKLTTIIE 360

Query: 330 AIF-HLEAFVAKFMSIYKGFLV 350
           +    LE   A++  ++    V
Sbjct: 361 SSLNVLEP--AEYRKMFDRLSV 380

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Length = 334

 Score = 74.8 bits (184), Expect = 3e-15
 Identities = 59/312 (18%), Positives = 96/312 (30%), Gaps = 55/312 (17%)

Query: 18  HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVF---GPGAE--------K 65
            +   + L          H LL    PG G   LI AL R +      G +        +
Sbjct: 7   LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66

Query: 66  VKVENKTWKIDAGSRNIDLELTTLSSANHV---ELSPSDAGFQDRYVVQEV--IKEMAKN 120
                    + AG               H     L+P      +   V  V  + E    
Sbjct: 67  --------LMQAG--------------THPDYYTLAPEKGK--NTLGVDAVREVTEKLNE 102

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
                 G  G KV+ + +   L+  A ++L +T+E+  A     L      ++   +RSR
Sbjct: 103 HA--RLG--GAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR 158

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           C    +  P E+  V  L        + +           S  S   A+  F+    Q  
Sbjct: 159 CRLHYLAPPPEQYAVTWLS-----REVTMSQDALLAALRLSAGSPGAALALFQGDNWQAR 213

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVV----LKR 296
                QA+         + + + +  EQ+P RL  +   L + L        V    +  
Sbjct: 214 E-TLCQALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPG 272

Query: 297 LLYELLKRLDAE 308
           L+ EL   L   
Sbjct: 273 LVAELANHLSPS 284

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Length = 250

 Score = 58.0 bits (141), Expect = 6e-10
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 27/232 (11%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMA-LLRQVFGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++  ++A  L    G 
Sbjct: 16  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 75

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV--IKEMAK 119
            A    V +   +I+ G R +DL          +E+   DA    R  V++   + +  +
Sbjct: 76  TATPCGVCDNCREIEQG-RFVDL----------IEI---DAA--SRTKVEDTRDLLDNVQ 119

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
             P   +G+  FKV +++EV  LSR + ++L +T+E+     + +L      K+   I S
Sbjct: 120 YAP--ARGR--FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 175

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
           RCL   + +   EQI   LE I  +E +         LA  +  SLR A LS
Sbjct: 176 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA-LS 226

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368

 Score = 58.4 bits (141), Expect = 9e-10
 Identities = 47/278 (16%), Positives = 92/278 (33%), Gaps = 49/278 (17%)

Query: 5   DKYRPKTLDQVIVHQD----IAQNLKKLVTE-QDCPH-LLFYGPPGSGKKTLIMAL---- 54
           D   P+   Q +V Q      A  + +++ E +     +L  G PG+GK  + M +    
Sbjct: 35  DALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94

Query: 55  ---LRQVFGPGAEKVKVENKTW--------------KIDAGSRNIDL-ELTTLSSANHVE 96
                     G+E   +E                          + L E+  + ++    
Sbjct: 95  GPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEID-VINSRTQG 153

Query: 97  LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRG----FKVLVLNEVDKLSREAQHSLRR 152
                +G      ++  ++E    +  + + +        VL ++EV  L  E+   L R
Sbjct: 154 FLALFSGDTGE--IKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNR 211

Query: 153 TMEKYSASCRLILCCN------------SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEF 200
            +E   A   LI+  N            S   +   +  R L +     +E+   ++L  
Sbjct: 212 ALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRI 270

Query: 201 IAKKEGLQLPSGFATRLAEKSNR-SLRRAILSFETCRV 237
             ++E +++     T L       SLR AI       +
Sbjct: 271 RCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASL 308

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384

 Score = 49.4 bits (117), Expect = 8e-07
 Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 29/239 (12%)

Query: 7   YRPKTLDQVIVHQD-----IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
              K +      ++      A  ++  V  +     LF G  G+GK  +   +  ++   
Sbjct: 17  SVFKEI----PFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI--- 69

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             E  K + +   +     N   E+     A    L+    GF        + + + K +
Sbjct: 70  -EEVKKEDEEYKDVKQAYVNCR-EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIK 127

Query: 122 PIDTKGKRGFKVLVLNEVDKL--SREAQHSLRRTMEKYSASCRLILCCNSS---SKVTEA 176
                 +    ++ L+EVD L   R     L + +   + +  +I+  N       +   
Sbjct: 128 NGTRNIR---AIIYLDEVDTLVKRRGGDIVLYQLLRSDA-NISVIMISNDINVRDYMEPR 183

Query: 177 IRSRC-LNIRINSPTEEQIVKVLEFI---AKKEGLQLPSG--FATRLAEKSNRSLRRAI 229
           + S    ++       EQ+  +L         +G        +   ++ K +   R+A+
Sbjct: 184 VLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAV 242

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389

 Score = 47.1 bits (111), Expect = 5e-06
 Identities = 37/259 (14%), Positives = 76/259 (29%), Gaps = 49/259 (18%)

Query: 7   YRPKTL---DQVIVHQDIAQNLKKLVTEQDC--PHLLFYGPPGSGKKTLIMALLRQVFGP 61
           Y PK L   +Q +  Q +   L   +       P     G PG+GK   +  L       
Sbjct: 14  YVPKRLPHREQQL--QQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL---- 67

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                      +K    +R + +      +   +    + +             E     
Sbjct: 68  -----------YKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALL 116

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----ASCRLILCCNS---SSKVT 174
               + +  +  LVL++   L+ +   +  R  ++          L++  ++    + + 
Sbjct: 117 VEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176

Query: 175 EAIRSRCLNIRINSP--TEEQIVK------------------VLEFIAKKEGLQLPSGFA 214
            + R       I     T++QI                    +L+ IA   G Q P    
Sbjct: 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTN 236

Query: 215 TRLAEKSNRSLRRAILSFE 233
              A  +   L R+  + +
Sbjct: 237 RGDARLAIDILYRSAYAAQ 255

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Length = 324

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 12/70 (17%)

Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTL--IMAL-----L 55
          RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL  ++A      L
Sbjct: 7  RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66

Query: 56 RQVFGPGAEK 65
          R   GP  EK
Sbjct: 67 RVTSGPAIEK 76

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Length = 338

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTL--IMAL-----L 55
          RP   D  I  + I +NL   +       +   H+LF GP G GK TL  I++      +
Sbjct: 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI 83

Query: 56 RQVFGPGAEK 65
          +    P  EK
Sbjct: 84 KTTAAPMIEK 93

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Length = 373

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 31/234 (13%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMA-LLRQVFGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++  ++A  L    G 
Sbjct: 9   KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA----GFQDRYVVQEVIKEM 117
            A    V +   +I+ G R +DL          +E+   DA      +D    ++ + + 
Sbjct: 69  TATPCGVCDNCREIEQG-RFVDL----------IEI---DAASRTKVED---TRD-LLDN 110

Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
            +  P   +G+  FKV +++EV  LSR + ++L +T+E+     + +L      K+   I
Sbjct: 111 VQYAP--ARGR--FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
            SRCL   + +   EQI   LE I  +E +         LA  +  SLR A LS
Sbjct: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA-LS 219

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Length = 334

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 12/70 (17%)

Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTL--IMAL-----L 55
          RPK+LD+ I  +++ + L   +       +   H+L  GPPG GK TL  I+A      +
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79

Query: 56 RQVFGPGAEK 65
              GP   K
Sbjct: 80 HVTSGPVLVK 89

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 19/137 (13%)

Query: 107 RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILC 166
           R  + +V+ +           +    VL ++EV  L  E    L R +E   A   +I  
Sbjct: 276 RGEINKVVNKYID----QGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPI-VIFA 330

Query: 167 CNSSSKVTEAI-------------RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213
            N  + V                   R + IR    T +++ ++++  A+ EG+ +    
Sbjct: 331 SNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEA 390

Query: 214 ATRLAEKSNR-SLRRAI 229
              L E   + +LR ++
Sbjct: 391 LNHLGEIGTKTTLRYSV 407

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 8  RPKTLDQVIVHQD--IAQN--LKKLVTEQDCPH-LLFYGPPGSGKKTL--IMA 53
          RP+ L Q  + Q   +A    L + + E    H ++ +GPPG+GK TL  ++A
Sbjct: 21 RPENLAQY-IGQQHLLAAGKPLPRAI-EAGHLHSMILWGPPGTGKTTLAEVIA 71

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Length = 387

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 48/306 (15%), Positives = 105/306 (34%), Gaps = 32/306 (10%)

Query: 19  QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78
           + +A+ L   +  +   + L YG  G+GK  +   +LR+          +E +   +   
Sbjct: 29  RRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR----------LEARASSLGVL 78

Query: 79  SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNE 138
            + I +      +   V  + ++A           + E+ +         RG  ++VL+E
Sbjct: 79  VKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDE 138

Query: 139 VDKL-----SREAQHSLRRTMEKYSASCRLILCCNSS-----SKVTEAIRSRCLNIRINS 188
           +D L      ++  + + R  ++      + L   ++       +   ++S    + +  
Sbjct: 139 IDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVF 198

Query: 189 P--TEEQIVKVLEF---IAKKEGLQLPSG--FATRLAEKSNRSLRRAILSFETCR--VQQ 239
           P  T  Q+  +LE     A   G+  P        LA + +   RRA+   +  R   + 
Sbjct: 199 PPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRAL---DLLRVAGEI 255

Query: 240 YPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLY 299
              +  + +          EI  D + E         +  L  +++            +Y
Sbjct: 256 AERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIY 315

Query: 300 ELLKRL 305
           E  K L
Sbjct: 316 ERYKEL 321

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 37/223 (16%), Positives = 69/223 (30%), Gaps = 58/223 (26%)

Query: 17  VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76
           +  + A+    L  E    H+ F G PG+GK T+ + +   +   G              
Sbjct: 50  LLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY------------- 96

Query: 77  AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK-----EMAKNRPIDTKGKRGF 131
                       +   + V ++  D     +Y+     K     + A             
Sbjct: 97  ------------VRKGHLVSVTRDD--LVGQYIGHTAPKTKEVLKRAMG----------- 131

Query: 132 KVLVLNEVDKLSR---------EAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAI 177
            VL ++E   L R         EA   L + ME       +IL   +       +     
Sbjct: 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191

Query: 178 RSR-CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219
           RSR   +I     ++E++ ++   +   +  Q+     T L  
Sbjct: 192 RSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRA 234

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 44/282 (15%), Positives = 93/282 (32%), Gaps = 29/282 (10%)

Query: 19  QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78
           + IA  L  L  E+   ++  YG  G+GK  ++  +L ++      K K       I+  
Sbjct: 30  RKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHV----YINT- 84

Query: 79  SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNE 138
                 ++ T       +L  S         +          + +   G +   V+VL+E
Sbjct: 85  -----RQIDTPYRV-LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQ--VVIVLDE 136

Query: 139 VDKLSR----EAQHSLRRTMEKYSASCRLILCCNSSSKVTE----AIRSRCLNIRI--NS 188
           +D   +    +  + L R   + + S    +   +  K  +     ++S      I    
Sbjct: 137 IDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPP 196

Query: 189 PTEEQIVKVLE---FIAKKEGLQLPSG--FATRLAEKSNRSLRRAILSFETCRVQQYPFK 243
              E++  +L     +A K G+   +       LA + +   RRA+        +     
Sbjct: 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVS-GEIAERM 255

Query: 244 DNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL 285
            +  +          EI  D +++      F  +  L  ++ 
Sbjct: 256 KDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVS 297

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 24/182 (13%)

Query: 36  HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95
            ++  G PG GK TL+  ++ ++   G   +    +  +     +     + T      +
Sbjct: 2   KIIITGEPGVGKTTLVKKIVERL---GKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI 58

Query: 96  ELSPSDAGFQD--RYVV----QEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK---LSREA 146
             S      +    Y V     E +      R      K   KV++++E+ K    S++ 
Sbjct: 59  FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF 118

Query: 147 QHSLRRTMEKYSASCRLILCC--NSSSKVTEAIRSRCLNIRINSPTEE-------QIVKV 197
           +  +R+ M     +  ++          + + IR       +   T E        I+ +
Sbjct: 119 RDLVRQIMH--DPNVNVVATIPIRDVHPLVKEIRRLP-GAVLIELTPENRDVILEDILSL 175

Query: 198 LE 199
           LE
Sbjct: 176 LE 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	354
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	100.0
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	100.0
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	100.0
2chq_A	319	Replication factor C small subunit; DNA-binding pr	100.0
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	100.0
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	100.0
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	100.0
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	100.0
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	100.0
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	100.0
3pvs_A	447	Replication-associated recombination protein A; ma	100.0
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.97
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.97
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.96
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	99.95
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.93
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.92
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.92
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.92
3bos_A	242	Putative DNA replication factor; P-loop containing	99.9
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.9
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.89
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.88
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.88
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.87
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.87
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.86
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.86
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.85
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.85
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.85
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.84
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.84
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.84
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.84
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.84
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.83
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.83
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.83
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.83
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.82
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.81
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.8
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.8
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.8
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.79
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.79
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.79
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.79
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.78
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.78
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.78
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.78
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.77
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.76
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.76
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.76
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.76
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.75
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.75
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.75
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.74
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.72
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.71
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.71
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.71
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.7
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.7
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.68
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.65
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.62
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.61
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.61
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.58
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.57
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.57
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.56
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.52
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.51
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.5
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.49
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.43
3co5_A	143	Putative two-component system transcriptional RES	99.43
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.43
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.41
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.36
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	99.35
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	99.31
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.24
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	99.23
1tue_A	212	Replication protein E1; helicase, replication, E1E	99.21
2fna_A	357	Conserved hypothetical protein; structural genomic	99.21
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	99.2
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	99.16
2qgz_A	308	Helicase loader, putative primosome component; str	99.06
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.99
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.94
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.94
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.93
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.93
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.93
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.92
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.89
1g6h_A	257	High-affinity branched-chain amino acid transport	98.88
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.88
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.88
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.87
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.87
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.86
3f8t_A	506	Predicted ATPase involved in replication control,	98.85
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.85
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.84
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.83
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.83
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.82
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.82
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.81
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.8
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.79
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.78
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.77
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.77
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.77
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.73
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.72
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.69
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.67
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.67
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.65
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.64
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.63
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.62
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.58
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.58
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.58
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.58
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.56
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.55
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.53
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.48
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.44
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.43
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	98.4
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.39
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.36
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.35
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	98.35
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.35
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.33
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.31
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.31
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	98.29
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.29
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.27
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	98.26
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.26
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.25
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.23
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.23
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.22
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.21
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.18
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.12
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.11
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.1
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.09
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.08
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.04
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.02
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.99
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.96
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.91
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.89
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.87
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.85
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.81
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.8
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.79
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	97.79
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.77
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.75
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.73
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.73
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.72
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.68
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.67
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.66
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.66
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.65
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.65
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.64
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.63
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	97.62
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.59
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.58
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.57
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.55
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.53
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.53
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	97.52
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.52
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.51
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.49
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.49
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.45
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.43
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.41
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.4
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.4
3io5_A	333	Recombination and repair protein; storage dimer, i	97.4
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.38
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.38
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.38
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.37
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.34
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.33
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.33
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.33
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.32
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.31
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.3
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.29
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.28
1via_A	175	Shikimate kinase; structural genomics, transferase	97.25
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	97.24
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.23
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.22
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.22
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.22
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.21
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.19
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	97.18
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.16
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.14
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.14
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.13
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.13
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.13
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.12
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.12
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.11
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.11
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.1
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.1
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.09
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	97.08
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.08
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.08
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.08
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.08
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.07
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.06
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.05
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.05
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.04
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.04
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.04
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.03
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.03
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.03
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.02
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.02
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.02
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.01
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.01
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.01
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.0
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.99
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.99
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.98
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.98
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.98
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.97
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.97
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.97
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.96
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.96
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.96
1jql_B	140	DNA polymerase III, delta subunit; processivity cl	96.96
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	96.96
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.95
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.95
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.94
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.94
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.93
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	96.93
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.93
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.92
2og2_A	359	Putative signal recognition particle receptor; nuc	96.92
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.91
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.91
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.91
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.9
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.9
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.9
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.9
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.89
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.89
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.88
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.88
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.88
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.88
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.86
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	96.86
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.85
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.85
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.84
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.84
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	96.84
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.82
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.81
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.8
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.8
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	96.79
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.79
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.79
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.78
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.78
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.76
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.75
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.72
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.72
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.72
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	96.7
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.7
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.67
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.67
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.66
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.65
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.63
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.62
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.62
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.62
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	96.62
3h1t_A	590	Type I site-specific restriction-modification syst	96.61
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.59
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.58
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	96.56
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.56
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.56
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.55
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.55
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	96.53
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.5
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.47
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.45
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	96.45
3bor_A	237	Human initiation factor 4A-II; translation initiat	96.44
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.44
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.44
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	96.43
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	96.39
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.39
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.38
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.38
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.38
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.37
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.35
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.35
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	96.35
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	96.35
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.34
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.34
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.34
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.33
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.33
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.31
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.31
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.29
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	96.27
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	96.27
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.26
2xxa_A	433	Signal recognition particle protein; protein trans	96.25
3ctd_A	213	Putative ATPase, AAA family; structural genomics,	96.25
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.24
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.24
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.24
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.23
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.22
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.21
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.19
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.17
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.16
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.16
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.14
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	96.14
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.13
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	96.13
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.13
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.12
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.09
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.08
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	96.07
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.05
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.04
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.03
2oca_A	510	DAR protein, ATP-dependent DNA helicase UVSW; ATP-	96.01
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	96.01
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.99
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.98
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	95.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.97
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.97
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.96
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.93
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.92
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.92
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.91
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.9
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	95.89
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.89
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.85
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.84
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.83
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.83
1wp9_A	494	ATP-dependent RNA helicase, putative; ATPase, DNA	95.81
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.8
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.79
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.78
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.78
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.78
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.77
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.77
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.76
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.75
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.74
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.74
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.72
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.7
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.7
2eyq_A	1151	TRCF, transcription-repair coupling factor; MFD, S	95.67
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.67
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.67
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	95.65
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	95.65
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.64
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.62
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.61
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.6
2whx_A	618	Serine protease/ntpase/helicase NS3; transcription	95.54
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.53
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.53
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	95.52
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.46
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.43
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.42
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.37
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.36
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.36
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.32
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.32
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	95.31
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.31
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.3
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	95.29
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.29
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.26
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	95.26
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.25
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	95.25
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.25
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.25
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.23
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	95.22
2z83_A	459	Helicase/nucleoside triphosphatase; hydrolase, mem	95.21
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.19
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.16
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.12
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	95.1
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.1
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.09
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	95.08
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.08
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.05
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.04
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	95.03
2jlq_A	451	Serine protease subunit NS3; ribonucleoprotein, nu	95.02
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.01
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.99
1yks_A	440	Genome polyprotein [contains: flavivirin protease	94.98
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.98
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.97
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.96
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	94.96
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.93
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.9
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.9
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	94.89
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.88
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	94.88
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	94.88
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.87
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	94.85
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	94.84
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	94.83
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.83
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.82

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=1.7e-50  Score=371.55  Aligned_cols=342  Identities=39%  Similarity=0.713  Sum_probs=280.7

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHH-hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l-~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
                      |+|++||||++|++++||+++++.++.++ +.++.+|++|+||+|+||||+++++++.++++..+.+.+++..+.  .+.
T Consensus         2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~--~~~   79 (354)
T 1sxj_E            2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV--TAS   79 (354)
T ss_dssp             --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred             CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec--ccc
Confidence            59999999999999999999999999999 888888999999999999999999999998988877777665543  111


Q ss_pred             ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC----CCC-CCCceEEEEeCCCcCCHHHHHHHHHHH
Q 018543           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID----TKG-KRGFKVLVLNEVDKLSREAQHSLRRTM  154 (354)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~-~~~~~viiiDE~d~l~~~~~~~Ll~~l  154 (354)
                      . .+..+..+.+..++++++++.+......+++.++.+....+..    +++ .++++++||||++.|+..++++|+++|
T Consensus        80 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~l  158 (354)
T 1sxj_E           80 N-RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM  158 (354)
T ss_dssp             -------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred             c-ccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence            1 1234555556667777776655443334677777765544331    012 457899999999999999999999999


Q ss_pred             hhccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHH
Q 018543          155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       155 e~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~-~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                      ++++.++.+|++|+++++++++++|||..++|++|+.+++..+|.+++.++|+.++ +++++.+++.++||+|+|++.|+
T Consensus       159 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~  238 (354)
T 1sxj_E          159 EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE  238 (354)
T ss_dssp             HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence            99988999999999999999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             HHHhcCC-CCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--hCCHHHH
Q 018543          234 TCRVQQY-PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--RLDAEIK  310 (354)
Q Consensus       234 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--~~~~~~~  310 (354)
                      .++.... .++.+..+..++++..++++++.++..+..+.+..+++.+++++..|+++..|+..+...+.+  .+++..+
T Consensus       239 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~l  318 (354)
T 1sxj_E          239 SMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNK  318 (354)
T ss_dssp             HHHHTTTTEECSSCCCCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHH
T ss_pred             HHHHhCCCCcCcCcCCCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHH
Confidence            8887765 577666566677888999999999987778889999999999999999999999999888877  6899999


Q ss_pred             HHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543          311 HEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       311 ~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~  345 (354)
                      .++++++++++++|+.|.++.++||.|++++|..+
T Consensus       319 ~~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~~  353 (354)
T 1sxj_E          319 SSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCL  353 (354)
T ss_dssp             HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998765

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=4.8e-44  Score=326.57  Aligned_cols=311  Identities=27%  Similarity=0.449  Sum_probs=259.3

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      ++|++||||++|++++||+++++.|+.+++.|+.||++|+||||+||||+++++++.+.+....                
T Consensus        13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~----------------   76 (340)
T 1sxj_C           13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS----------------   76 (340)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH----------------
T ss_pred             CchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc----------------
Confidence            4899999999999999999999999999999999999999999999999999999988654311                


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                                 ..+.+++.++...  ...+++.++.+......   ..++++|+||||+|.++.+++++|++++|+++.+
T Consensus        77 -----------~~~~~~~~~~~~~--~~~ir~~i~~~~~~~~~---~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~  140 (340)
T 1sxj_C           77 -----------NMVLELNASDDRG--IDVVRNQIKDFASTRQI---FSKGFKLIILDEADAMTNAAQNALRRVIERYTKN  140 (340)
T ss_dssp             -----------HHEEEECTTSCCS--HHHHHTHHHHHHHBCCS---SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT
T ss_pred             -----------ceEEEEcCccccc--HHHHHHHHHHHHhhccc---CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence                       0123444443222  23466667666653321   1245799999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~  240 (354)
                      +.+|++||.+.++.++++|||..++|++++.+++..++.+++.++++.++++++..+++.++||+|++++.|+.++....
T Consensus       141 ~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~  220 (340)
T 1sxj_C          141 TRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLD  220 (340)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTC
T ss_pred             eEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998765433


Q ss_pred             -----CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-hCC-HHHH
Q 018543          241 -----PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-RLD-AEIK  310 (354)
Q Consensus       241 -----~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~il~~l~~~~~~-~~~-~~~~  310 (354)
                           .++.+.  ..........++++++.+..    .+..++...+++++. .|++|.+++..+...+.. .++ ...+
T Consensus       221 ~~~~~~it~~~v~~~~~~~~~~~i~~l~~~i~~----~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~  296 (340)
T 1sxj_C          221 NPDEDEISDDVIYECCGAPRPSDLKAVLKSILE----DDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETR  296 (340)
T ss_dssp             SSSCCCBCHHHHHHHTTCCCHHHHHHHHHHHHT----SCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHH
T ss_pred             CcccccccHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcHHHH
Confidence                 233322  12223345677888888876    567788999999998 899999999988877755 566 7889


Q ss_pred             HHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543          311 HEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG  347 (354)
Q Consensus       311 ~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~  347 (354)
                      .++++.+++++.+|..|.++.+++|.|+++++..++.
T Consensus       297 ~~~~~~l~~~~~~l~~g~~~~l~le~l~~~l~~~~~~  333 (340)
T 1sxj_C          297 VHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASFEN  333 (340)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999886654

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=100.00  E-value=3.1e-43  Score=319.29  Aligned_cols=298  Identities=21%  Similarity=0.320  Sum_probs=246.5

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
                      .+|++||||++|++++|++++++.++.+++.++.+| ++++||||+|||++++++++.+.                    
T Consensus        14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~--------------------   73 (324)
T 3u61_B           14 HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN--------------------   73 (324)
T ss_dssp             SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT--------------------
T ss_pred             chHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--------------------
Confidence            489999999999999999999999999999999888 78889999999999999998761                    


Q ss_pred             ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-HHHHHHHHHHHhhcc
Q 018543           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYS  158 (354)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~  158 (354)
                                  ..++++++++.+   ...+++.+..+....+.    .++++++||||+|.++ .+.++.|++++++++
T Consensus        74 ------------~~~~~i~~~~~~---~~~i~~~~~~~~~~~~~----~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~  134 (324)
T 3u61_B           74 ------------ADMMFVNGSDCK---IDFVRGPLTNFASAASF----DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS  134 (324)
T ss_dssp             ------------EEEEEEETTTCC---HHHHHTHHHHHHHBCCC----SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG
T ss_pred             ------------CCEEEEcccccC---HHHHHHHHHHHHhhccc----CCCCeEEEEECCcccCcHHHHHHHHHHHHhCC
Confidence                        112445554433   23566667666665543    3578999999999999 999999999999998


Q ss_pred             CceeEEEEecCCCcccHHHhhhcceeeecCCCHHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCCHHHHHH
Q 018543          159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ-------IVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAIL  230 (354)
Q Consensus       159 ~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~-------~~~~L~~~~~~~~~~i~~-~~l~~i~~~s~gd~R~ai~  230 (354)
                      .++.+|++||.+.++.++++|||.+++|++|+.++       +..++..++.++++.+++ ++++.+++.++||+|.+++
T Consensus       135 ~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~  214 (324)
T 3u61_B          135 SNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIG  214 (324)
T ss_dssp             GGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred             CCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHH
Confidence            89999999999999999999999999999999887       455666777889999988 9999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHH
Q 018543          231 SFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIK  310 (354)
Q Consensus       231 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~~~  310 (354)
                      .|+.++ ....++.+..-......+.++++++.+..    .+..+++..+++++.   +|..|+..++.++.+.+++..+
T Consensus       215 ~L~~~~-~~~~i~~~~v~~~~~~~~~i~~~~~~~~~----~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~~~~~~~l  286 (324)
T 3u61_B          215 ELDSYS-SKGVLDAGILSLVTNDRGAIDDVLESLKN----KDVKQLRALAPKYAA---DYSWFVGKLAEEIYSRVTPQSI  286 (324)
T ss_dssp             HHHHHG-GGTCBCC------------CHHHHHHHHT----TCHHHHHHHHHHHSS---CHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHh-ccCCCCHHHHHHHhCCHHHHHHHHHHHHc----CCHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhCCHHHH
Confidence            999988 44456555411111113356667776655    577788888888877   8999999999999999999999


Q ss_pred             HHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543          311 HEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       311 ~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~  345 (354)
                      .++.+++++++++|+.|.++.+|||.|++++|...
T Consensus       287 ~~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~~  321 (324)
T 3u61_B          287 IRMYEIVGENNQYHGIAANTELHLAYLFIQLACEM  321 (324)
T ss_dssp             HHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999753

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=100.00  E-value=1.8e-41  Score=306.79  Aligned_cols=308  Identities=32%  Similarity=0.534  Sum_probs=254.6

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      ++|++||||.+|++++|++++++.+..++..++.+|++|+||||+|||++++.+++.+.++....               
T Consensus         5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~---------------   69 (319)
T 2chq_A            5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRD---------------   69 (319)
T ss_dssp             -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHH---------------
T ss_pred             ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccC---------------
Confidence            58999999999999999999999999999999988999999999999999999999886543110               


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                                  ..++++.++....  ..+++.+..+....+.   ..++++++||||+|.++.+.++.|++++++++.+
T Consensus        70 ------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~  132 (319)
T 2chq_A           70 ------------NFIEMNASDERGI--DVVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKS  132 (319)
T ss_dssp             ------------HCEEEETTSTTCT--TTSSHHHHHHHHSCCS---SSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSS
T ss_pred             ------------CeEEEeCccccCh--HHHHHHHHHHHhcCCC---CCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCC
Confidence                        0122332222111  1234445555544333   1256799999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~  240 (354)
                      +.+|++||.+.++.++++|||..++|++++.+++..++.+++.++|+.+++++++.++..++||+|.+++.++.++..+.
T Consensus       133 ~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~  212 (319)
T 2chq_A          133 CRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGE  212 (319)
T ss_dssp             EEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSS
T ss_pred             CeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887655


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 018543          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-RLDAEIKHEVCHW  316 (354)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~  316 (354)
                      .++.+.  .+........++++++.+..    ++..++...+.+++. .|++|..++..+...+.. .++.+.+.++++.
T Consensus       213 ~i~~~~v~~~~~~~~~~~~~~l~~~~~~----~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l~~~~~~l~~~~~~  288 (319)
T 2chq_A          213 VVDADTIYQITATARPEEMTELIQTALK----GNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDK  288 (319)
T ss_dssp             CBCHHHHHHHTTCCCHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCSCTTHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCCHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            555433  22233345677888888876    567788888999987 899999999988877654 4788889999999


Q ss_pred             HHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543          317 AAYYEHKMRRGNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       317 ~~~~~~~l~~~~~~~l~l~~~i~~~~~~  344 (354)
                      +.+++.+++.|.++.+++|.++++++..
T Consensus       289 l~~~~~~lk~~~~~~~~le~l~~~l~~~  316 (319)
T 2chq_A          289 LGEVDFRLTEGANERIQLDAYLAYLSTL  316 (319)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998764

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=2.1e-41  Score=307.43  Aligned_cols=309  Identities=34%  Similarity=0.553  Sum_probs=254.7

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      ++|++||+|.+|++++|++++++.+..++..++.+|++|+||||+|||++++++++.+.++...                
T Consensus        13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~----------------   76 (327)
T 1iqp_A           13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWR----------------   76 (327)
T ss_dssp             SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHH----------------
T ss_pred             CchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCccc----------------
Confidence            5899999999999999999999999999999999999999999999999999999987433110                


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                                 ...+++++++..  ....+++.+..+....+.   ..++++++||||+|.++.+.+++|++++++++.+
T Consensus        77 -----------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~  140 (327)
T 1iqp_A           77 -----------HNFLELNASDER--GINVIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSN  140 (327)
T ss_dssp             -----------HHEEEEETTCHH--HHHTTHHHHHHHHHSCCG---GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT
T ss_pred             -----------CceEEeeccccC--chHHHHHHHHHHHhhCCc---CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCC
Confidence                       011233332211  111244445555544433   1246799999999999999999999999999889


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~  240 (354)
                      +++|++++.+.++.++++|||..++|+|++.+++..++..++.++++.+++++++.+++.++||+|.+++.++.++....
T Consensus       141 ~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~  220 (327)
T 1iqp_A          141 VRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK  220 (327)
T ss_dssp             EEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred             CeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876554


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 018543          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHW  316 (354)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~  316 (354)
                      .++.+.  ..........++++++.+..    .+...+.+.+++++ ..|++|..++..+...+.+ .++...+..++..
T Consensus       221 ~i~~~~v~~~~~~~~~~~i~~l~~~~~~----~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~  296 (327)
T 1iqp_A          221 KITDENVFMVASRARPEDIREMMLLALK----GNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADK  296 (327)
T ss_dssp             EECHHHHHHHTTCCCHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            444333  12223345677888888776    56677888888998 8899999999988887765 5888899999999


Q ss_pred             HHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543          317 AAYYEHKMRRGNKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       317 ~~~~~~~l~~~~~~~l~l~~~i~~~~~~~  345 (354)
                      +.+++.+++.|.++.+++|.++++++...
T Consensus       297 l~~~~~~lk~~~~~~~~le~l~~~l~~~~  325 (327)
T 1iqp_A          297 IGEYNFRLVEGANEIIQLEALLAQFTLIG  325 (327)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999998754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=4.1e-40  Score=302.14  Aligned_cols=311  Identities=25%  Similarity=0.471  Sum_probs=248.0

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .+|++||||.+|++++|++++++.+..++..+..+|++|+||||+|||++++++++.+.++...                
T Consensus        25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~----------------   88 (353)
T 1sxj_D           25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLM----------------   88 (353)
T ss_dssp             -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHH----------------
T ss_pred             ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccc----------------
Confidence            4899999999999999999999999999999988889999999999999999999987432100                


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC-------CCCCCCceEEEEeCCCcCCHHHHHHHHHH
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID-------TKGKRGFKVLVLNEVDKLSREAQHSLRRT  153 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~viiiDE~d~l~~~~~~~Ll~~  153 (354)
                                ....+++++++...  ...+++.+..+.......       ....+++++++|||+|.+++..+++|++.
T Consensus        89 ----------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~  156 (353)
T 1sxj_D           89 ----------KSRILELNASDERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRT  156 (353)
T ss_dssp             ----------TTSEEEECSSSCCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHH
T ss_pred             ----------ccceEEEccccccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHH
Confidence                      01123344433211  123444444444321110       01124568999999999999999999999


Q ss_pred             HhhccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543          154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       154 le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                      |++++.++++|+++|++..+.+++++||..+.|++++.+++..++..++.++++.+++++++.+++.++||+|.+++.++
T Consensus       157 le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~  236 (353)
T 1sxj_D          157 METYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ  236 (353)
T ss_dssp             HHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             HHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            99998899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC------CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Q 018543          234 TCRVQQY------PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--  303 (354)
Q Consensus       234 ~~~~~~~------~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--  303 (354)
                      .++....      .++.++  .+........++++++.+..    ++...+...+++++..|++|..|+..+...+..  
T Consensus       237 ~~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~----~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~  312 (353)
T 1sxj_D          237 SASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKS----GDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITND  312 (353)
T ss_dssp             HTHHHHHHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHS----CCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCS
T ss_pred             HHHHhcCCCccCccccHHHHHHHhCCCCHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            7764321      344332  11111122456677777654    456678888999999999999999999888776  


Q ss_pred             hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          304 RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                      .++...+.+++..+++++.+|+.|.++.++++.++++++.
T Consensus       313 ~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~l~~~~~~~~~  352 (353)
T 1sxj_D          313 NFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQ  352 (353)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence            5788889999999999999999999999999999999874

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=2.8e-38  Score=286.36  Aligned_cols=306  Identities=23%  Similarity=0.361  Sum_probs=242.9

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      ++|++||+|.+|++++|++..++.+..+++.++.+|++|+||+|+|||++++.+++.+.++...                
T Consensus         9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~----------------   72 (323)
T 1sxj_B            9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYA----------------   72 (323)
T ss_dssp             CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHH----------------
T ss_pred             CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCccc----------------
Confidence            4799999999999999999999999999999998899999999999999999999987543210                


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                                 ...+++++.+...  ...+++.++.+...... . ..+++++|||||+|.++.+.+++|++++++++.+
T Consensus        73 -----------~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~-~-~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~  137 (323)
T 1sxj_B           73 -----------DGVLELNASDDRG--IDVVRNQIKHFAQKKLH-L-PPGKHKIVILDEADSMTAGAQQALRRTMELYSNS  137 (323)
T ss_dssp             -----------HHEEEECTTSCCS--HHHHHTHHHHHHHBCCC-C-CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT
T ss_pred             -----------CCEEEecCccccC--hHHHHHHHHHHHhcccc-C-CCCCceEEEEECcccCCHHHHHHHHHHHhccCCC
Confidence                       0123333333211  23466666666532211 0 1235799999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~  240 (354)
                      +.+|++|+.+.++.++++|||..++|++++.+++..++..++.++|+.+++++++.+++.++||+|.+++.++.++....
T Consensus       138 ~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~  217 (323)
T 1sxj_B          138 TRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG  217 (323)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             ceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998875433


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHh--CCHHHHHHHHH
Q 018543          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYE-LLLNCVPPVVVLKRLLYELLKR--LDAEIKHEVCH  315 (354)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~~  315 (354)
                      .++.+.  .+........+++++    ..   .+..++...+++ ++..++++..++..+...+.+.  ++...+.++++
T Consensus       218 ~i~~~~v~~~~~~~~~~~i~~~~----~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l~  290 (323)
T 1sxj_B          218 LVNADNVFKIVDSPHPLIVKKML----LA---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIK  290 (323)
T ss_dssp             SBCHHHHHHHHTSCCHHHHHHHH----SC---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred             CcCHHHHHHHHCCCCHHHHHHHH----hc---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence            333222  011111122333332    22   455667777887 8888999999998876655441  78888999999


Q ss_pred             HHHHHhhHhhCCCChhHhHHHHHHHHHHH
Q 018543          316 WAAYYEHKMRRGNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       316 ~~~~~~~~l~~~~~~~l~l~~~i~~~~~~  344 (354)
                      .+.+++.+++.|.++.+++|.++++++..
T Consensus       291 ~l~~~~~~l~~~~~~~l~le~l~~~~~~~  319 (323)
T 1sxj_B          291 EIGLTHMRILEGVGTYLQLASMLAKIHKL  319 (323)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccChHHHHHHHHHHHHhh
Confidence            99999999999999999999999998764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=100.00  E-value=8.6e-36  Score=275.41  Aligned_cols=323  Identities=17%  Similarity=0.208  Sum_probs=245.8

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      +|.+||||.+|++++|++++++.+..++..++.+| ++|+||+|+|||++++.+++.+.+..... ...       |..|
T Consensus         5 ~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~-------~~~~   76 (373)
T 1jr3_A            5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP-------CGVC   76 (373)
T ss_dssp             CHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC-------CSSS
T ss_pred             HHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC-------Cccc
Confidence            69999999999999999999999999999999888 89999999999999999999887653211 001       1111


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..|..+....+.+.+++.+......  ..+++++..+... +    ..++++||||||+|.++.+.++.|++++++++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-~----~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~  149 (373)
T 1jr3_A           77 DNCREIEQGRFVDLIEIDAASRTKV--EDTRDLLDNVQYA-P----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH  149 (373)
T ss_dssp             HHHHHHHTSCCSSCEEEETTCSCCS--SCHHHHHHHTTSC-C----SSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHhccCCCceEEecccccCCH--HHHHHHHHHHhhc-c----ccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCc
Confidence            1111222222333445544332111  2366666554332 2    2456799999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-  239 (354)
                      +.+|++++.+.++.++++|||..++|++++.+++..++.+++.++|+.+++++++.+++.++||+|.+.++++.+...+ 
T Consensus       150 ~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~  229 (373)
T 1jr3_A          150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD  229 (373)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTT
T ss_pred             eEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999776543 


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH---------------
Q 018543          240 YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELL---------------  302 (354)
Q Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~---------------  302 (354)
                      ..++.+.  .+........++++++.+..    ++...+...+.++...+.+|..++..+...+.               
T Consensus       230 ~~i~~~~v~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~  305 (373)
T 1jr3_A          230 GQVSTQAVSAMLGTLDDDQALSLVEAMVE----ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND  305 (373)
T ss_dssp             TCBCHHHHHHHTTCCCHHHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSG
T ss_pred             CcccHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCcccccc
Confidence            3444332  11222234567788888876    45556677777788888888877665544332               


Q ss_pred             ------------HhCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          303 ------------KRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       303 ------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                                  +.++......+++.+.+++..++.+.++.+.+|.++.++..
T Consensus       306 ~~~~~~~~~~~a~~~~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~  358 (373)
T 1jr3_A          306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA  358 (373)
T ss_dssp             GGGTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence                        23455556678888899999999888999999999988754

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=2.5e-34  Score=256.43  Aligned_cols=279  Identities=11%  Similarity=0.115  Sum_probs=211.5

Q ss_pred             cCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc-CCCCcccccccccccccCCCccccccccccccCcee
Q 018543           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (354)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   95 (354)
                      ||+++++.|+..+++++.|++||+||||+|||++++++++.+. +..                           .+++.+
T Consensus         1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~---------------------------~~~d~~   53 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP---------------------------KASDVL   53 (305)
T ss_dssp             ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC---------------------------CTTTEE
T ss_pred             ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhc---------------------------cCCCEE
Confidence            7899999999999999965699999999999999999998531 000                           123455


Q ss_pred             eeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccH
Q 018543           96 ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE  175 (354)
Q Consensus        96 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~  175 (354)
                      ++++++. ......++++++.+.. .|.    .++++|+||||+|.|+.+++|+|+++||+|++++.||++|++++++++
T Consensus        54 ~l~~~~~-~~~id~ir~li~~~~~-~p~----~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~  127 (305)
T 2gno_A           54 EIDPEGE-NIGIDDIRTIKDFLNY-SPE----LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLP  127 (305)
T ss_dssp             EECCSSS-CBCHHHHHHHHHHHTS-CCS----SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred             EEcCCcC-CCCHHHHHHHHHHHhh-ccc----cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChH
Confidence            6665431 1222357888776554 332    357899999999999999999999999999999999999999999999


Q ss_pred             HHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-------CCCC-CCC-
Q 018543          176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-------YPFK-DNQ-  246 (354)
Q Consensus       176 ~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~-------~~~~-~~~-  246 (354)
                      +|+||  +++|++++.+++..+|.+++   +  ++++++    ..+.||+|+|++.++.....-       ...+ .+. 
T Consensus       128 tI~SR--~~~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v  196 (305)
T 2gno_A          128 TIKSR--VFRVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLL  196 (305)
T ss_dssp             HHHTT--SEEEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred             HHHce--eEeCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            99999  99999999999999999887   3  556665    457999999999886321100       0011 111 


Q ss_pred             -CCCCCCHHH--HHHHHHHHHHhccChhHHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 018543          247 -AIPAMDWEE--FVFEIASDIMQEQSPKRLFQVRGKLYELLL--NCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYE  321 (354)
Q Consensus       247 -~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~  321 (354)
                       .+.....+.  .++++++.+.+    ++..++.+.+++++.  .|++|.+++..+++.+... ....+.+.++..+.++
T Consensus       197 ~~~~~~~~~~~~~v~~l~~ai~~----~~~~~a~~~~~~l~~~~~g~~~~~~i~~~~r~l~~~-~~~~~~~~l~~~~~~~  271 (305)
T 2gno_A          197 KKVLSKGLEGYLACRELLERFSK----VESKEFFALFDQVTNTITGKDAFLLIQRLTRIILHE-NTWESVEDQKSVSFLD  271 (305)
T ss_dssp             TTTTCSHHHHHHHHHHHHHHHHH----SCGGGHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHT-SCCCSHHHHHHHHHHH
T ss_pred             HHHHccCCcchHHHHHHHHHHHC----CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh-chhhhHHHHHHHHHHH
Confidence             223333433  68999999987    555677788889988  8999988888888877742 1223356777999999


Q ss_pred             hHhhC---CCChhHhHHHHHHHHHHH
Q 018543          322 HKMRR---GNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       322 ~~l~~---~~~~~l~l~~~i~~~~~~  344 (354)
                      .++..   |.++.+||+.++++++..
T Consensus       272 ~~~~~k~~g~~~~lql~~l~~~~~~~  297 (305)
T 2gno_A          272 SILRVKIANLNNKLTLMNILAIHRER  297 (305)
T ss_dssp             HHHTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            99999   999999999999999853

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=100.00  E-value=8.1e-32  Score=244.66  Aligned_cols=294  Identities=17%  Similarity=0.156  Sum_probs=210.9

Q ss_pred             cCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543           17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (354)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   95 (354)
                      -+++.++.|...+++|+.+| +||+||+|+|||++|+++|+.+.|........        |+.|..|..+....+.+..
T Consensus         6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~--------c~~c~~c~~~~~~~~~d~~   77 (334)
T 1a5t_A            6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKS--------CGHCRGCQLMQAGTHPDYY   77 (334)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBC--------CSCSHHHHHHHHTCCTTEE
T ss_pred             chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCC--------CCCCHHHHHHhcCCCCCEE
Confidence            36888999999999999999 99999999999999999999998865321111        3333333344445556666


Q ss_pred             eeCCCCC-CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCccc
Q 018543           96 ELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT  174 (354)
Q Consensus        96 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~  174 (354)
                      .+.+.+. .......++++++.+...+     ..++++|+||||+|.|+.+++++|+++||+|+.++.||++|+++++++
T Consensus        78 ~~~~~~~~~~~~i~~ir~l~~~~~~~~-----~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~  152 (334)
T 1a5t_A           78 TLAPEKGKNTLGVDAVREVTEKLNEHA-----RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLL  152 (334)
T ss_dssp             EECCCTTCSSBCHHHHHHHHHHTTSCC-----TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSC
T ss_pred             EEeccccCCCCCHHHHHHHHHHHhhcc-----ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCc
Confidence            6766421 1122235777766544332     246789999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 018543          175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWE  254 (354)
Q Consensus       175 ~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~~~~~~~~~~~~~  254 (354)
                      ++++|||+.++|++++.+++..+|.+++     .+++++++.+++.++||+|+|+++++......              .
T Consensus       153 ~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~--------------~  213 (334)
T 1a5t_A          153 ATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQA--------------R  213 (334)
T ss_dssp             HHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHH--------------H
T ss_pred             HHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHHH--------------H
Confidence            9999999999999999999999998754     67899999999999999999999987654221              1


Q ss_pred             HHHHHHHHHHHhccC---------hhHHHH----HHHHHHHHHHcC------CChHHHHHHHHHHHHHhCCHHHHHHHHH
Q 018543          255 EFVFEIASDIMQEQS---------PKRLFQ----VRGKLYELLLNC------VPPVVVLKRLLYELLKRLDAEIKHEVCH  315 (354)
Q Consensus       255 ~~~~~l~~~~~~~~~---------~~~~~~----~~~~~~~l~~~~------~~~~~il~~l~~~~~~~~~~~~~~~~~~  315 (354)
                      ..+.+.+..+.....         ..+...    ....+.+++..+      ..+. ... ....+.+.++......+++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~-~~~-~~~~~a~~~~~~~l~~~~~  291 (334)
T 1a5t_A          214 ETLCQALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVD-VPG-LVAELANHLSPSRLQAILG  291 (334)
T ss_dssp             HHHHHHHHHHHHHCCCGGGHHHHCSTTHHHHHHHHHHHHHHHTCC------CCCTT-CHH-HHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCccccCHH-HHH-HHHHHHHhCCHHHHHHHHH
Confidence            111222222111100         011112    222233333221      1221 122 2233445688888889999


Q ss_pred             HHHHHhhHhh--CCCChhHhHHHHHHHHHHH
Q 018543          316 WAAYYEHKMR--RGNKAIFHLEAFVAKFMSI  344 (354)
Q Consensus       316 ~~~~~~~~l~--~~~~~~l~l~~~i~~~~~~  344 (354)
                      .+.+.+.+++  .+.++.+.+|.++.++...
T Consensus       292 ~l~~~~~~l~~~~~~n~~l~le~ll~~l~~~  322 (334)
T 1a5t_A          292 DVCHIREQLMSVTGINRELLITDLLLRIEHY  322 (334)
T ss_dssp             HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            9999999999  8999999999999998753

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=100.00  E-value=2.3e-32  Score=256.09  Aligned_cols=273  Identities=21%  Similarity=0.314  Sum_probs=194.2

Q ss_pred             CcccccCCCCCCCcccCHHHH---HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543            2 LWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~   78 (354)
                      +|+++|||++|++++||++++   +.|...++.++.++++|+|||||||||+|+++++.+.++                 
T Consensus        15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-----------------   77 (447)
T 3pvs_A           15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-----------------   77 (447)
T ss_dssp             CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-----------------
T ss_pred             ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-----------------
Confidence            799999999999999999999   899999999999889999999999999999999975211                 


Q ss_pred             CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc
Q 018543           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (354)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~  158 (354)
                                     ...++....+.   ..+++.+........     .++..++||||+|.++...|+.|++.+|+  
T Consensus        78 ---------------f~~l~a~~~~~---~~ir~~~~~a~~~~~-----~~~~~iLfIDEI~~l~~~~q~~LL~~le~--  132 (447)
T 3pvs_A           78 ---------------VERISAVTSGV---KEIREAIERARQNRN-----AGRRTILFVDEVHRFNKSQQDAFLPHIED--  132 (447)
T ss_dssp             ---------------EEEEETTTCCH---HHHHHHHHHHHHHHH-----TTCCEEEEEETTTCC------CCHHHHHT--
T ss_pred             ---------------eEEEEeccCCH---HHHHHHHHHHHHhhh-----cCCCcEEEEeChhhhCHHHHHHHHHHHhc--
Confidence                           12222222222   235555554433221     24568999999999999999999999998  


Q ss_pred             CceeEEEEecCC--CcccHHHhhhcceeeecCCCHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHcCCCHHHHH
Q 018543          159 ASCRLILCCNSS--SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK-------EGLQLPSGFATRLAEKSNRSLRRAI  229 (354)
Q Consensus       159 ~~~~~Il~~~~~--~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~-------~~~~i~~~~l~~i~~~s~gd~R~ai  229 (354)
                      ..+.+|++|+..  ..+.+++.|||.++.|++++.+++..++.+.+.+       .++.+++++++.+++.++||+|.++
T Consensus       133 ~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll  212 (447)
T 3pvs_A          133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL  212 (447)
T ss_dssp             TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred             CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence            457777777543  3789999999999999999999999999999886       5677999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCC-CCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHH
Q 018543          230 LSFETCRVQQYPFKDN-QAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAE  308 (354)
Q Consensus       230 ~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~  308 (354)
                      +.|+.++.....-... ..+.    .    +.++.++.... ..+++..+.+|++++              .+.++    
T Consensus       213 n~Le~a~~~a~~~~~~~~~It----~----e~v~~~l~~~~-~~~dk~gd~~yd~is--------------al~ks----  265 (447)
T 3pvs_A          213 NTLEMMADMAEVDDSGKRVLK----P----ELLTEIAGERS-ARFDNKGDRFYDLIS--------------ALHKS----  265 (447)
T ss_dssp             HHHHHHHHHSCBCTTSCEECC----H----HHHHHHHTCCC-CC---CCHHHHHHHH--------------HHHHH----
T ss_pred             HHHHHHHHhcccccCCCCccC----H----HHHHHHHhhhh-hccCCccchHHHHHH--------------HHHHH----
Confidence            9999887654311000 0111    1    22233332211 122233334454433              45554    


Q ss_pred             HHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543          309 IKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG  347 (354)
Q Consensus       309 ~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~  347 (354)
                      .+....+.+.+|..+|..+++++.    +|+|++.+.|+
T Consensus       266 irgsd~daAl~~la~ml~~Gedp~----~i~rrl~~~a~  300 (447)
T 3pvs_A          266 VRGSAPDAALYWYARIITAGGDPL----YVARRCLAIAS  300 (447)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHH
Confidence            556677788899999999888886    78888888875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.97  E-value=3.8e-29  Score=213.77  Aligned_cols=207  Identities=41%  Similarity=0.670  Sum_probs=171.1

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      ++|.++|+|.+|++++|++..++.+..++..+..++++|+||+|+|||++++.+++.+.+....                
T Consensus         5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~----------------   68 (226)
T 2chg_A            5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWR----------------   68 (226)
T ss_dssp             CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGG----------------
T ss_pred             hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccc----------------
Confidence            5899999999999999999999999999998887789999999999999999999977432110                


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                                 ...+.++......  ...+++.+..+....+.   ...++.+|+|||+|.++...++.|++.+++++.+
T Consensus        69 -----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~  132 (226)
T 2chg_A           69 -----------DNFIEMNASDERG--IDVVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKS  132 (226)
T ss_dssp             -----------GGEEEEETTCTTC--HHHHHHHHHHHHTSCCS---TTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT
T ss_pred             -----------cceEEeccccccC--hHHHHHHHHHHhcccCC---CccCceEEEEeChhhcCHHHHHHHHHHHHhcCCC
Confidence                       0012233222211  12344444444443222   2356789999999999999999999999998888


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~  239 (354)
                      +.+|++++.+..+.+++.+||..+.|++++.+++..++.+++.+.+..+++++++.+++.++||+|.+++.++.++..+
T Consensus       133 ~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~  211 (226)
T 2chg_A          133 CRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG  211 (226)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             CeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999888765

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.97  E-value=1.2e-29  Score=243.10  Aligned_cols=311  Identities=21%  Similarity=0.264  Sum_probs=197.2

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhc-----------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCC
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA   63 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~   63 (354)
                      .+|++||||++|++++|++..++.+..|++.                 +..++++|+||||+|||++|+++++++..   
T Consensus        27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~---  103 (516)
T 1sxj_A           27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY---  103 (516)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred             CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC---
Confidence            4899999999999999999999999999875                 12345999999999999999999997611   


Q ss_pred             cccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC---------CCCCCCceEE
Q 018543           64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID---------TKGKRGFKVL  134 (354)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~~vi  134 (354)
                      .                             ++++++++....  ..+...+........+.         ....+++.||
T Consensus       104 ~-----------------------------~i~in~s~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl  152 (516)
T 1sxj_A          104 D-----------------------------ILEQNASDVRSK--TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVI  152 (516)
T ss_dssp             E-----------------------------EEEECTTSCCCH--HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEE
T ss_pred             C-----------------------------EEEEeCCCcchH--HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEE
Confidence            1                             122232222111  01111111111100000         0112467899


Q ss_pred             EEeCCCcCCHHHH---HHHHHHHhhccCceeEEEEecCCC-cccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 018543          135 VLNEVDKLSREAQ---HSLRRTMEKYSASCRLILCCNSSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (354)
Q Consensus       135 iiDE~d~l~~~~~---~~Ll~~le~~~~~~~~Il~~~~~~-~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~  210 (354)
                      ||||+|.++...+   +.|++.+++.  ..++|++|++.. ..++++++||..+.|++|+.+++..+|..++.++++.++
T Consensus       153 iIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~  230 (516)
T 1sxj_A          153 IMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD  230 (516)
T ss_dssp             EECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred             EEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence            9999999976544   7888888873  466888888765 556789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCCC--CC---CCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH
Q 018543          211 SGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQA--IP---AMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL  285 (354)
Q Consensus       211 ~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  285 (354)
                      +++++.|++.++||+|.+++.|+.++.....++.+..  +.   ..+....++++++.++..............+.+.+.
T Consensus       231 ~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~~~~~~~~~~~~~~~~~~~  310 (516)
T 1sxj_A          231 PNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIA  310 (516)
T ss_dssp             TTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBGGGTSTTGGGTSCHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcCCccccccccCCCHHHhhh
Confidence            9999999999999999999999998877666655431  00   011223456666666643211000000001111111


Q ss_pred             c-CCChHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHhhHhh--CCCChhHhHHHHHHHHHHHHHH
Q 018543          286 N-CVPPVVVLKRLLYELLKRL---------DAEIKHEVCHWAAYYEHKMR--RGNKAIFHLEAFVAKFMSIYKG  347 (354)
Q Consensus       286 ~-~~~~~~il~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~--~~~~~~l~l~~~i~~~~~~~~~  347 (354)
                      . ..+++.+...+.+++.+..         .-+......++++..|.-..  .+....+.|..+.+-+++++..
T Consensus       311 ~~~~~~~~~~~~i~eNy~~~~p~~~~~~~~~l~~~~~a~d~ls~~D~~~~~i~~~~q~~~l~~~~~~~~~v~p~  384 (516)
T 1sxj_A          311 LYFDDFDFTPLMIQENYLSTRPSVLKPGQSHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPA  384 (516)
T ss_dssp             HHTTSTTTHHHHHHHHSSSSEESCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCSSCGGGHHHHHHHHTHHHH
T ss_pred             hhccCHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHHhHHHHHHHHHccCCCCcccchhhHhhhhhccH
Confidence            1 1122223333444443211         11345567777777664332  2223456666677766766643

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.96  E-value=5.9e-28  Score=209.17  Aligned_cols=223  Identities=22%  Similarity=0.306  Sum_probs=169.5

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      +|.++|+|.++++++|++...+.+..++..++.++ ++|+||+|+|||++++.+++.+.+.... ....       +..+
T Consensus        12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~-~~~~-------~~~~   83 (250)
T 1njg_A           12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATP-------CGVC   83 (250)
T ss_dssp             CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCS-CSSC-------CSCS
T ss_pred             HHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCC-------Cccc
Confidence            79999999999999999999999999999888776 9999999999999999999987553311 0000       0111


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                      ..+..+........+.+.....  .....++++++.+...     ...+++.+|||||+|.++...++.|++.+++++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~  156 (250)
T 1njg_A           84 DNCREIEQGRFVDLIEIDAASR--TKVEDTRDLLDNVQYA-----PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH  156 (250)
T ss_dssp             HHHHHHHTTCCSSEEEEETTCG--GGHHHHHHHHHSCCCS-----CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTT
T ss_pred             HHHHHHhccCCcceEEecCccc--ccHHHHHHHHHHhhhc-----hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCc
Confidence            0000111111112233332211  1111233333222111     12345689999999999999999999999998888


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~  239 (354)
                      +.+|++++....+.+++.+||..++|++++.+++..++.+++.+++..+++++++.+++.++|++|.+.++++.+...+
T Consensus       157 ~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~  235 (250)
T 1njg_A          157 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG  235 (250)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTT
T ss_pred             eEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999886543

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=99.95  E-value=9.2e-28  Score=219.08  Aligned_cols=276  Identities=15%  Similarity=0.099  Sum_probs=202.1

Q ss_pred             HHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCC
Q 018543           25 LKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG  103 (354)
Q Consensus        25 l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  103 (354)
                      +.+.++ ++.+| ++|+||+|+||++.++.+++.+.+.+..                    ++      ..+++..    
T Consensus         9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~--------------------~~------~~~~~~~----   57 (343)
T 1jr3_D            9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE--------------------EH------HTFSIDP----   57 (343)
T ss_dssp             HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC--------------------EE------EEEECCT----
T ss_pred             HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC--------------------ee------EEEEecC----
Confidence            445555 45565 9999999999999999999987543210                    00      0122221    


Q ss_pred             CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCc-CCHHHHHHHHHHHhhccCceeEEEEecCC------CcccHH
Q 018543          104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYSASCRLILCCNSS------SKVTEA  176 (354)
Q Consensus       104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~------~~l~~~  176 (354)
                      .   ..++++...+... |+    .++++||+|||++. ++.+++++|++++|+|++++.+|++++..      .++.++
T Consensus        58 ~---~~~~~l~~~~~~~-pl----f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~  129 (343)
T 1jr3_D           58 N---TDWNAIFSLCQAM-SL----FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTA  129 (343)
T ss_dssp             T---CCHHHHHHHHHHH-HH----CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHH
T ss_pred             C---CCHHHHHHHhcCc-CC----ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHH
Confidence            1   2356666554433 32    35679999999999 99999999999999999999999999874      468999


Q ss_pred             HhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCCCC--CCCCCC
Q 018543          177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ--YPFKDNQ--AIPAMD  252 (354)
Q Consensus       177 l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~--~~~~~~~--~~~~~~  252 (354)
                      +.|||.+++|.+++.+++..|+.+++.++|+.+++++++.+++.++||+|.+.+.|+.++...  ..++.++  .+....
T Consensus       130 i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~  209 (343)
T 1jr3_D          130 LANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDA  209 (343)
T ss_dssp             HTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred             HHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999999999999888742  3344322  000001


Q ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH-------------------------------
Q 018543          253 WEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL-------------------------------  301 (354)
Q Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~-------------------------------  301 (354)
                      .+..++++++.+..    ++...+...+.+++..|.+|..++..+..++                               
T Consensus       210 ~~~~if~l~~ai~~----~d~~~al~~l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~  285 (343)
T 1jr3_D          210 AHFTPFHWVDALLM----GKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGM  285 (343)
T ss_dssp             CCCCHHHHHHHHTT----SCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHH
T ss_pred             hcCCHHHHHHHHHC----CCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHHHHHH
Confidence            12346777777776    4455555655566666777766655443332                               


Q ss_pred             ----HHhCCHHHHHHHHHHHHHHhhHhhCCC--ChhHhHHHHHHHHHH
Q 018543          302 ----LKRLDAEIKHEVCHWAAYYEHKMRRGN--KAIFHLEAFVAKFMS  343 (354)
Q Consensus       302 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~l~l~~~i~~~~~  343 (354)
                          .++++.+....+++.+.+.+..++.|.  +..+.+|.++.+++.
T Consensus       286 ~~~~~~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~~~le~l~l~l~~  333 (343)
T 1jr3_D          286 MGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCH  333 (343)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Confidence                224455556778888999999999874  457999999988753

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.93  E-value=2.1e-24  Score=196.43  Aligned_cols=190  Identities=21%  Similarity=0.299  Sum_probs=147.8

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhc-----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      .|.+||+|.+|++++|++.+++.+..++..     ...++++|+||||||||++|+++++.+.++   .+          
T Consensus        18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~---~~----------   84 (338)
T 3pfi_A           18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN---IK----------   84 (338)
T ss_dssp             -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC---EE----------
T ss_pred             hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eE----------
Confidence            699999999999999999999988888864     344469999999999999999999875221   01          


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~  156 (354)
                                         .++.....  ....+...+   ..        ..+..++||||++.++.+.++.|++.+++
T Consensus        85 -------------------~~~~~~~~--~~~~~~~~~---~~--------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~  132 (338)
T 3pfi_A           85 -------------------TTAAPMIE--KSGDLAAIL---TN--------LSEGDILFIDEIHRLSPAIEEVLYPAMED  132 (338)
T ss_dssp             -------------------EEEGGGCC--SHHHHHHHH---HT--------CCTTCEEEEETGGGCCHHHHHHHHHHHHT
T ss_pred             -------------------Eecchhcc--chhHHHHHH---Hh--------ccCCCEEEEechhhcCHHHHHHHHHHHHh
Confidence                               11110000  111122222   22        13458999999999999999999999987


Q ss_pred             ccC------------------ceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543          157 YSA------------------SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (354)
Q Consensus       157 ~~~------------------~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i  217 (354)
                      ...                  .+.+|++||....+.+++++|| ..++|++|+.+++..++.+.+...++.+++++++.+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l  212 (338)
T 3pfi_A          133 YRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEI  212 (338)
T ss_dssp             SCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHH
T ss_pred             ccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            431                  2678889999889999999999 789999999999999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHH
Q 018543          218 AEKSNRSLRRAILSFETCR  236 (354)
Q Consensus       218 ~~~s~gd~R~ai~~L~~~~  236 (354)
                      ++.+.|++|.+.+.++.+.
T Consensus       213 ~~~~~G~~r~l~~~l~~~~  231 (338)
T 3pfi_A          213 AKRSRSTPRIALRLLKRVR  231 (338)
T ss_dssp             HHTTTTCHHHHHHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHHHH
Confidence            9999999999999998753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.92  E-value=1.6e-24  Score=199.60  Aligned_cols=232  Identities=19%  Similarity=0.222  Sum_probs=152.1

Q ss_pred             CcccccCCCC-CCCcccCHHHHHH---HHHHHhcCCCC--eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543            2 LWVDKYRPKT-LDQVIVHQDIAQN---LKKLVTEQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (354)
Q Consensus         2 ~w~ekyrP~~-~~~~~g~~~~~~~---l~~~l~~~~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~   75 (354)
                      .+.++++|.. |++++|++.+++.   +...+..+..+  +++|+||||+|||++|+++++.+.+..+ .+.+.+..+. 
T Consensus        32 ~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~-~~~~~~~~~~-  109 (368)
T 3uk6_A           32 GLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP-FTAIAGSEIF-  109 (368)
T ss_dssp             CBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC-EEEEEGGGGS-
T ss_pred             CcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC-cccccchhhh-
Confidence            3568999998 9999999988765   55566667665  5999999999999999999998754211 1111111100 


Q ss_pred             cCCCccc-c------------------------cccccc--ccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCC
Q 018543           76 DAGSRNI-D------------------------LELTTL--SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGK  128 (354)
Q Consensus        76 ~~~~~~~-~------------------------~~~~~~--~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  128 (354)
                       +..... .                        .++...  .......+.....+. ....+++.+..............
T Consensus       110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~g~~~  187 (368)
T 3uk6_A          110 -SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGE-IKSEVREQINAKVAEWREEGKAE  187 (368)
T ss_dssp             -CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC--------CHHHHHHHHHHHHHHHHHTC--
T ss_pred             -hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccc-cHHHHHHHHHHHHHHhhhhcccc
Confidence             000000 0                        000000  000000000000000 01234444433322110000001


Q ss_pred             CCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEec------------CCCcccHHHhhhcceeeecCCCHHHHHH
Q 018543          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN------------SSSKVTEAIRSRCLNIRINSPTEEQIVK  196 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~------------~~~~l~~~l~sR~~~i~~~~~~~~~~~~  196 (354)
                      ..+.|+||||+|.++.+.++.|++.++++.... ++++++            .+..+.++++|||..+.|++|+.+++..
T Consensus       188 ~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~  266 (368)
T 3uk6_A          188 IIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQ  266 (368)
T ss_dssp             -CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred             ccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHH
Confidence            124699999999999999999999999876543 444444            2557889999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHhc
Q 018543          197 VLEFIAKKEGLQLPSGFATRLAEKSN-RSLRRAILSFETCRVQ  238 (354)
Q Consensus       197 ~L~~~~~~~~~~i~~~~l~~i~~~s~-gd~R~ai~~L~~~~~~  238 (354)
                      +++.++..+++.+++++++.+++.+. ||+|.++++++.++..
T Consensus       267 il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~  309 (368)
T 3uk6_A          267 ILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLV  309 (368)
T ss_dssp             HHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998 9999999999976543

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.92  E-value=5.6e-24  Score=200.89  Aligned_cols=103  Identities=21%  Similarity=0.310  Sum_probs=96.5

Q ss_pred             eEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEe---------cC----CCcccHHHhhhcceeeecCCCHHHHHHHH
Q 018543          132 KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC---------NS----SSKVTEAIRSRCLNIRINSPTEEQIVKVL  198 (354)
Q Consensus       132 ~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~---------~~----~~~l~~~l~sR~~~i~~~~~~~~~~~~~L  198 (354)
                      +|+||||+|.|+.+++++|+++||+++.. .||+.+         ++    +.+++++++|||+.++|++++.+++..+|
T Consensus       297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL  375 (456)
T 2c9o_A          297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII  375 (456)
T ss_dssp             CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred             eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence            69999999999999999999999999887 677787         44    66899999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHH
Q 018543          199 EFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETC  235 (354)
Q Consensus       199 ~~~~~~~~~~i~~~~l~~i~~~s-~gd~R~ai~~L~~~  235 (354)
                      ++++..+++.++++++..+++.+ .|++|.|+++++.+
T Consensus       376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a  413 (456)
T 2c9o_A          376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPA  413 (456)
T ss_dssp             HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            99999999999999999999999 99999999999976

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.92  E-value=3e-23  Score=187.70  Aligned_cols=193  Identities=24%  Similarity=0.299  Sum_probs=150.1

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhc----C-CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~----~-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      +|.+||+|.+|++++|++...+.+..++..    + ...+++|+||||+|||++|+++++.+.++               
T Consensus         1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~---------------   65 (324)
T 1hqc_A            1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN---------------   65 (324)
T ss_dssp             ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC---------------
T ss_pred             CCccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC---------------
Confidence            588999999999999999998888887753    2 33459999999999999999999876211               


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~  156 (354)
                                       .+.++......     ..++...+...       ..+..++||||++.++...++.|++.+++
T Consensus        66 -----------------~~~~~~~~~~~-----~~~l~~~l~~~-------~~~~~~l~lDEi~~l~~~~~~~L~~~l~~  116 (324)
T 1hqc_A           66 -----------------LRVTSGPAIEK-----PGDLAAILANS-------LEEGDILFIDEIHRLSRQAEEHLYPAMED  116 (324)
T ss_dssp             -----------------EEEECTTTCCS-----HHHHHHHHTTT-------CCTTCEEEETTTTSCCHHHHHHHHHHHHH
T ss_pred             -----------------EEEEeccccCC-----hHHHHHHHHHh-------ccCCCEEEEECCcccccchHHHHHHHHHh
Confidence                             01111111111     12233322220       13457999999999999999999999987


Q ss_pred             cc------------------CceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543          157 YS------------------ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (354)
Q Consensus       157 ~~------------------~~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i  217 (354)
                      ..                  .++.+|++||.+..+.+++.+|| .++.|++|+.+++..++.+.+...++.+++++++.+
T Consensus       117 ~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l  196 (324)
T 1hqc_A          117 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEI  196 (324)
T ss_dssp             SEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred             hhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            42                  34678999999999999999999 589999999999999999999988999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHhc
Q 018543          218 AEKSNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       218 ~~~s~gd~R~ai~~L~~~~~~  238 (354)
                      ++.+.|++|.+.+.++.+...
T Consensus       197 ~~~~~G~~r~l~~~l~~~~~~  217 (324)
T 1hqc_A          197 GRRSRGTMRVAKRLFRRVRDF  217 (324)
T ss_dssp             HHHSCSCHHHHHHHHHHHTTT
T ss_pred             HHHccCCHHHHHHHHHHHHHH
Confidence            999999999999999977543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.90  E-value=7.4e-23  Score=176.91  Aligned_cols=193  Identities=17%  Similarity=0.241  Sum_probs=147.0

Q ss_pred             CcccccCC-CCCCCccc---CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543            2 LWVDKYRP-KTLDQVIV---HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (354)
Q Consensus         2 ~w~ekyrP-~~~~~~~g---~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~   77 (354)
                      +|..+|+| .+|+++++   ++.+.+.+..++..+..++++|+||||+|||++++.+++.+.........+++..+.   
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~---   92 (242)
T 3bos_A           16 SLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA---   92 (242)
T ss_dssp             EEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG---
T ss_pred             CCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH---
Confidence            58899999 79999996   468888899988876666799999999999999999999874432211111111000   


Q ss_pred             CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHH--HHHHHHHHh
Q 018543           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA--QHSLRRTME  155 (354)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~--~~~Ll~~le  155 (354)
                                              ...      .+.+.           ...++.+++|||++.++...  ++.|+..++
T Consensus        93 ------------------------~~~------~~~~~-----------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~  131 (242)
T 3bos_A           93 ------------------------SIS------TALLE-----------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYN  131 (242)
T ss_dssp             ------------------------GSC------GGGGT-----------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHH
T ss_pred             ------------------------HHH------HHHHH-----------hccCCCEEEEeccccccCCHHHHHHHHHHHH
Confidence                                    000      00000           01245799999999987655  888888887


Q ss_pred             hccCc-e-eEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 018543          156 KYSAS-C-RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR  226 (354)
Q Consensus       156 ~~~~~-~-~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R  226 (354)
                      ..... . .+|++++...    .+.+++.+||   .++.|++|+.+++..++...+...++.+++++++.+++.++||+|
T Consensus       132 ~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r  211 (242)
T 3bos_A          132 RVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLR  211 (242)
T ss_dssp             HHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHH
T ss_pred             HHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHH
Confidence            65332 2 4788877554    4569999999   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 018543          227 RAILSFETCRVQ  238 (354)
Q Consensus       227 ~ai~~L~~~~~~  238 (354)
                      .+.+.++.++..
T Consensus       212 ~l~~~l~~~~~~  223 (242)
T 3bos_A          212 TLFDVLDRLDKA  223 (242)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999977643

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.90  E-value=7.2e-22  Score=179.14  Aligned_cols=189  Identities=21%  Similarity=0.284  Sum_probs=145.2

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhcC-----CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ-----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~   77 (354)
                      |+++++|++|++++|++.+++.+...++.+     ...+++|+||||+||||+++++++.+.++-           .   
T Consensus        15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~-----------~---   80 (334)
T 1in4_A           15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI-----------H---   80 (334)
T ss_dssp             --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE-----------E---
T ss_pred             HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE-----------E---
Confidence            699999999999999999999998888653     335699999999999999999999773210           0   


Q ss_pred             CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc
Q 018543           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (354)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~  157 (354)
                                        ......  ......+....   ...        ...+|++|||++.+.+..++.|+..++..
T Consensus        81 ------------------~~sg~~--~~~~~~l~~~~---~~~--------~~~~v~~iDE~~~l~~~~~e~L~~~~~~~  129 (334)
T 1in4_A           81 ------------------VTSGPV--LVKQGDMAAIL---TSL--------ERGDVLFIDEIHRLNKAVEELLYSAIEDF  129 (334)
T ss_dssp             ------------------EEETTT--CCSHHHHHHHH---HHC--------CTTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred             ------------------EEechH--hcCHHHHHHHH---HHc--------cCCCEEEEcchhhcCHHHHHHHHHHHHhc
Confidence                              000000  00111122221   111        23479999999999998888888888654


Q ss_pred             c------------------CceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018543          158 S------------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (354)
Q Consensus       158 ~------------------~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~  218 (354)
                      .                  ....++.+++.+..+.+++++||. .+.|.+++.+++.++|++.+...++.++++++..|+
T Consensus       130 ~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia  209 (334)
T 1in4_A          130 QIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIA  209 (334)
T ss_dssp             CCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred             ccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence            2                  124566778888899999999996 689999999999999999998899999999999999


Q ss_pred             HHcCCCHHHHHHHHHHHH
Q 018543          219 EKSNRSLRRAILSFETCR  236 (354)
Q Consensus       219 ~~s~gd~R~ai~~L~~~~  236 (354)
                      +.+.||+|.|+++|+.+.
T Consensus       210 ~~~~G~~R~a~~ll~~~~  227 (334)
T 1in4_A          210 KRSRGTPRIAIRLTKRVR  227 (334)
T ss_dssp             HTSTTCHHHHHHHHHHHH
T ss_pred             HhcCCChHHHHHHHHHHH
Confidence            999999999999998653

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.89  E-value=1.2e-21  Score=181.53  Aligned_cols=192  Identities=19%  Similarity=0.261  Sum_probs=145.3

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhc------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~   69 (354)
                      -|+++|+|.+|++++|++.+++.+..++..            ....++||+||||||||++|+++|+++..   ..    
T Consensus       104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~---~~----  176 (389)
T 3vfd_A          104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA---TF----  176 (389)
T ss_dssp             TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EE----
T ss_pred             hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC---cE----
Confidence            499999999999999999999999988731            12345999999999999999999987521   11    


Q ss_pred             cccccccCCCccccccccccccCceeeeCCCCCC----CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---
Q 018543           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---  142 (354)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---  142 (354)
                                               +.+++.+..    ......++.++......         .+.||||||+|.+   
T Consensus       177 -------------------------~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~---------~~~il~iDEid~l~~~  222 (389)
T 3vfd_A          177 -------------------------FNISAASLTSKYVGEGEKLVRALFAVAREL---------QPSIIFIDQVDSLLCE  222 (389)
T ss_dssp             -------------------------EEECSCCC-------CHHHHHHHHHHHHHS---------SSEEEEEETGGGGC--
T ss_pred             -------------------------EEeeHHHhhccccchHHHHHHHHHHHHHhc---------CCeEEEEECchhhccc
Confidence                                     111211111    01112344555444332         3479999999988   


Q ss_pred             --------CHHHHHHHHHHHhhc----cCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCC
Q 018543          143 --------SREAQHSLRRTMEKY----SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQL  209 (354)
Q Consensus       143 --------~~~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i  209 (354)
                              ....++.|+..++..    ..++.+|.+||.++.+.+++++||. .+.|+.|+.++...++..++...+..+
T Consensus       223 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l  302 (389)
T 3vfd_A          223 RREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL  302 (389)
T ss_dssp             ------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS
T ss_pred             CCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC
Confidence                    344667788888643    3457788899999999999999995 799999999999999999999889999


Q ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHH
Q 018543          210 PSGFATRLAEKSNRSLRRAILSFET  234 (354)
Q Consensus       210 ~~~~l~~i~~~s~gd~R~ai~~L~~  234 (354)
                      +++.+..++..+.|..+.++..|-.
T Consensus       303 ~~~~~~~la~~~~g~~~~~l~~L~~  327 (389)
T 3vfd_A          303 TQKELAQLARMTDGYSGSDLTALAK  327 (389)
T ss_dssp             CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9999999999999988877766543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.88  E-value=1.9e-21  Score=173.61  Aligned_cols=197  Identities=17%  Similarity=0.221  Sum_probs=144.7

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhc------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~   69 (354)
                      .|+++|+|.+|++++|++.+++.+..++..            ....+++|+||||||||++|+++++++.++   .+.++
T Consensus        10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~---~~~i~   86 (297)
T 3b9p_A           10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT---FLNIS   86 (297)
T ss_dssp             TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE---EEEEE
T ss_pred             HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEee
Confidence            589999999999999999999999987743            123359999999999999999999976211   11111


Q ss_pred             cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------
Q 018543           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------  143 (354)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------  143 (354)
                      +..+.                .         .........++.++.....         ..+.+|+|||+|.+.      
T Consensus        87 ~~~l~----------------~---------~~~~~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~  132 (297)
T 3b9p_A           87 AASLT----------------S---------KYVGDGEKLVRALFAVARH---------MQPSIIFIDEVDSLLSERSSS  132 (297)
T ss_dssp             STTTS----------------S---------SSCSCHHHHHHHHHHHHHH---------TCSEEEEEETGGGTSBCC---
T ss_pred             HHHHh----------------h---------cccchHHHHHHHHHHHHHH---------cCCcEEEeccHHHhccccccC
Confidence            11000                0         0001111234444443332         234899999998873      


Q ss_pred             -----HHHHHHHHHHHhhcc-----CceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543          144 -----REAQHSLRRTMEKYS-----ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (354)
Q Consensus       144 -----~~~~~~Ll~~le~~~-----~~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~  212 (354)
                           ...++.|+..++..+     .++.+|.+||.++.+.+++++|| ..+.++.|+.++...++...+.+.+..++++
T Consensus       133 ~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~  212 (297)
T 3b9p_A          133 EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTE  212 (297)
T ss_dssp             --CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHH
T ss_pred             cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHH
Confidence                 456677888887754     34678888999999999999999 4789999999999999999998888889999


Q ss_pred             HHHHHHHHcCCCHHHHHHH-HHHH
Q 018543          213 FATRLAEKSNRSLRRAILS-FETC  235 (354)
Q Consensus       213 ~l~~i~~~s~gd~R~ai~~-L~~~  235 (354)
                      .++.+++.+.|..+..+.. ++.+
T Consensus       213 ~~~~la~~~~g~~~~~l~~l~~~a  236 (297)
T 3b9p_A          213 ALRRLAKITDGYSGSDLTALAKDA  236 (297)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999999999988877644 4433

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.88  E-value=8e-22  Score=177.11  Aligned_cols=187  Identities=20%  Similarity=0.263  Sum_probs=139.2

Q ss_pred             CcccCHHHHHHHHHHHh---------------cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543           14 QVIVHQDIAQNLKKLVT---------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~---------------~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~   78 (354)
                      +++|++++++.+..++.               .....+++|+||||||||++|+++++.+.......             
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~-------------   98 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR-------------   98 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS-------------
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC-------------
Confidence            68999999988887664               22333599999999999999999999874322100             


Q ss_pred             CccccccccccccCceeeeCCCCC----CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---------CHH
Q 018543           79 SRNIDLELTTLSSANHVELSPSDA----GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SRE  145 (354)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~  145 (354)
                                  ....+.+++.+.    -......+...++.   .         .+.+|||||+|.+         +.+
T Consensus        99 ------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~---~---------~~~vl~iDEid~l~~~~~~~~~~~~  154 (309)
T 3syl_A           99 ------------KGHLVSVTRDDLVGQYIGHTAPKTKEVLKR---A---------MGGVLFIDEAYYLYRPDNERDYGQE  154 (309)
T ss_dssp             ------------SCCEEEECGGGTCCSSTTCHHHHHHHHHHH---H---------TTSEEEEETGGGSCCCC---CCTHH
T ss_pred             ------------CCcEEEEcHHHhhhhcccccHHHHHHHHHh---c---------CCCEEEEEChhhhccCCCcccccHH
Confidence                        000111111111    01111123333322   1         1269999999977         788


Q ss_pred             HHHHHHHHHhhccCceeEEEEecCCC-----cccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 018543          146 AQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE  219 (354)
Q Consensus       146 ~~~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~  219 (354)
                      .++.|++.|++.+.++.+|++++...     .+.++++||| ..++|++|+.+++..++..++.+.++.+++++++.+++
T Consensus       155 ~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~  234 (309)
T 3syl_A          155 AIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRA  234 (309)
T ss_dssp             HHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            99999999999888888888887653     3468999999 79999999999999999999999999999999999998


Q ss_pred             H--------cCCCHHHHHHHHHHHHh
Q 018543          220 K--------SNRSLRRAILSFETCRV  237 (354)
Q Consensus       220 ~--------s~gd~R~ai~~L~~~~~  237 (354)
                      .        ..||+|.+.+.++.++.
T Consensus       235 ~~~~~~~~~~~gn~r~l~~~l~~a~~  260 (309)
T 3syl_A          235 YIGLRRNQPHFANARSIRNALDRARL  260 (309)
T ss_dssp             HHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCCCcHHHHHHHHHHHHH
Confidence            6        45999999999997764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.87  E-value=8.6e-21  Score=171.25  Aligned_cols=195  Identities=18%  Similarity=0.181  Sum_probs=141.7

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHh----------c-CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~----------~-~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~   69 (354)
                      .|+.++.+.+|++++|++.+++.|+.++.          . +..+ ++||+||||||||++|+++|+++..+   .+.++
T Consensus         7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~v~   83 (322)
T 3eie_A            7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST---FFSVS   83 (322)
T ss_dssp             CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE---EEEEE
T ss_pred             ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC---EEEEc
Confidence            47899999999999999999999998872          2 2222 49999999999999999999976211   11111


Q ss_pred             cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----
Q 018543           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (354)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----  144 (354)
                      +..+.                        . .........++.++......         .+.||+|||+|.+..     
T Consensus        84 ~~~l~------------------------~-~~~g~~~~~~~~~f~~a~~~---------~~~vl~iDEid~l~~~~~~~  129 (322)
T 3eie_A           84 SSDLV------------------------S-KWMGESEKLVKQLFAMAREN---------KPSIIFIDQVDALTGTRGEG  129 (322)
T ss_dssp             HHHHH------------------------T-TTGGGHHHHHHHHHHHHHHT---------SSEEEEEECGGGGSCC----
T ss_pred             hHHHh------------------------h-cccchHHHHHHHHHHHHHhc---------CCeEEEechhhhhhccCCCC
Confidence            11000                        0 00011112355555444332         347999999998853     


Q ss_pred             ------HHHHHHHHHHhh---ccCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 018543          145 ------EAQHSLRRTMEK---YSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (354)
Q Consensus       145 ------~~~~~Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l  214 (354)
                            ..++.|+..++.   ...++.+|.+||.++.+.+++++||. .+.+++|+.++...+++.++...+..+++..+
T Consensus       130 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l  209 (322)
T 3eie_A          130 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDY  209 (322)
T ss_dssp             --CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHH
T ss_pred             cchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHH
Confidence                  346778888864   34567788899999999999999994 69999999999999999999888888899999


Q ss_pred             HHHHHHcCC-CHHHHHHHHH
Q 018543          215 TRLAEKSNR-SLRRAILSFE  233 (354)
Q Consensus       215 ~~i~~~s~g-d~R~ai~~L~  233 (354)
                      +.+++.+.| +.+..-++++
T Consensus       210 ~~la~~t~g~sg~di~~l~~  229 (322)
T 3eie_A          210 RTLGAMTEGYSGSDIAVVVK  229 (322)
T ss_dssp             HHHHHTTTTCCHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHH
Confidence            999999887 3444334443

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.87  E-value=1.1e-20  Score=172.66  Aligned_cols=195  Identities=18%  Similarity=0.193  Sum_probs=134.8

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHh----------c-CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~----------~-~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~   69 (354)
                      .|..++.|.+|++++|++.+++.|+.++.          . ...+ ++||+||||||||++|+++|+++..+   .+.++
T Consensus        40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~---~~~v~  116 (355)
T 2qp9_X           40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST---FFSVS  116 (355)
T ss_dssp             -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE---EEEEE
T ss_pred             hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC---EEEee
Confidence            46778999999999999999999998773          1 2233 39999999999999999999987211   11111


Q ss_pred             cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----
Q 018543           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (354)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----  144 (354)
                      +..+.                .        ...+. ....++.++.....         ..+.||||||+|.+..     
T Consensus       117 ~~~l~----------------~--------~~~g~-~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~r~~~  162 (355)
T 2qp9_X          117 SSDLV----------------S--------KWMGE-SEKLVKQLFAMARE---------NKPSIIFIDQVDALTGTRGEG  162 (355)
T ss_dssp             HHHHH----------------S--------CC----CHHHHHHHHHHHHH---------TSSEEEEEECGGGGTC-----
T ss_pred             HHHHh----------------h--------hhcch-HHHHHHHHHHHHHH---------cCCeEEEEechHhhcccCCCC
Confidence            11000                0        00111 11234555544332         2348999999998863     


Q ss_pred             ------HHHHHHHHHHhhc---cCceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 018543          145 ------EAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (354)
Q Consensus       145 ------~~~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l  214 (354)
                            ..++.|+..|+..   ..++.+|.+||.++.+.+++++|| ..+.+++|+.++...+++.++...+..+++..+
T Consensus       163 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l  242 (355)
T 2qp9_X          163 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDY  242 (355)
T ss_dssp             -CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHH
Confidence                  3467788888643   456788889999999999999999 579999999999999999998877777889999


Q ss_pred             HHHHHHcCC-CHHHHHHHHH
Q 018543          215 TRLAEKSNR-SLRRAILSFE  233 (354)
Q Consensus       215 ~~i~~~s~g-d~R~ai~~L~  233 (354)
                      +.|++.+.| +.+..-++++
T Consensus       243 ~~la~~t~G~sg~dl~~l~~  262 (355)
T 2qp9_X          243 RTLGAMTEGYSGSDIAVVVK  262 (355)
T ss_dssp             HHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHH
Confidence            999999988 3444444444

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.86  E-value=2.6e-20  Score=172.49  Aligned_cols=217  Identities=16%  Similarity=0.209  Sum_probs=149.1

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhc----CCC--CeEEEeCCCCCcHHHHHHHHHHHhcCC-CCccccccccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDC--PHLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWK   74 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~----~~~--~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~   74 (354)
                      +|.++|+|   ++++|+++..+.+..++..    +..  ++++|+||||+|||++++.+++.+.+. ....+.+++....
T Consensus         9 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~   85 (389)
T 1fnn_A            9 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR   85 (389)
T ss_dssp             GGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred             hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence            47788998   7899999988888887765    232  369999999999999999999987544 2222333321110


Q ss_pred             ccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHH
Q 018543           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM  154 (354)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~l  154 (354)
                          +...  -+..+.  ..+.......+.......+.+...+..        .+++.+|+|||+|.++...++.|++.+
T Consensus        86 ----~~~~--~~~~l~--~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlilDE~~~l~~~~~~~L~~~~  149 (389)
T 1fnn_A           86 ----NFTA--IIGEIA--RSLNIPFPRRGLSRDEFLALLVEHLRE--------RDLYMFLVLDDAFNLAPDILSTFIRLG  149 (389)
T ss_dssp             ----SHHH--HHHHHH--HHTTCCCCSSCCCHHHHHHHHHHHHHH--------TTCCEEEEEETGGGSCHHHHHHHHHHT
T ss_pred             ----CHHH--HHHHHH--HHhCccCCCCCCCHHHHHHHHHHHHhh--------cCCeEEEEEECccccchHHHHHHHHHH
Confidence                0000  000000  000000001111111112222222221        134589999999999999999999999


Q ss_pred             hhcc----CceeEEEEecCC---CcccHHHhhhcc--eeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc--
Q 018543          155 EKYS----ASCRLILCCNSS---SKVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKS--  221 (354)
Q Consensus       155 e~~~----~~~~~Il~~~~~---~~l~~~l~sR~~--~i~~~~~~~~~~~~~L~~~~~~~--~~~i~~~~l~~i~~~s--  221 (354)
                      ++.+    .++.+|++++++   ..+.+.+.+||.  .++|+|++.+++..++..++...  ...+++++++.+++.+  
T Consensus       150 ~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  229 (389)
T 1fnn_A          150 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGA  229 (389)
T ss_dssp             TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSB
T ss_pred             HhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Confidence            7754    478899999988   578899999987  69999999999999999988752  2468899999999999  


Q ss_pred             -------CCCHHHHHHHHHHHHh
Q 018543          222 -------NRSLRRAILSFETCRV  237 (354)
Q Consensus       222 -------~gd~R~ai~~L~~~~~  237 (354)
                             .||+|.+++.++.++.
T Consensus       230 ~~~~~~~~G~~r~~~~~l~~a~~  252 (389)
T 1fnn_A          230 QTPLDTNRGDARLAIDILYRSAY  252 (389)
T ss_dssp             SSTTCTTSCCHHHHHHHHHHHHH
T ss_pred             cccCCCCCCcHHHHHHHHHHHHH
Confidence                   8999999999997654

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.5e-20  Score=165.69  Aligned_cols=196  Identities=9%  Similarity=0.086  Sum_probs=125.9

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCC-------CcccccccccccccCCCccccccccccccCcee
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-------AEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   95 (354)
                      ..|...+..++.++++|+||||||||++++.+++++....       ...+.++|....  ++..    .+..+.    -
T Consensus        34 ~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~--t~~~----~~~~I~----~  103 (318)
T 3te6_A           34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA--GMDA----LYEKIW----F  103 (318)
T ss_dssp             HHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC----HH----HHHHHH----H
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC--CHHH----HHHHHH----H
Confidence            3455566677888899999999999999999999885321       112233332211  0000    000000    0


Q ss_pred             eeCCCCC-CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh---ccCceeEEEEecCCC
Q 018543           96 ELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK---YSASCRLILCCNSSS  171 (354)
Q Consensus        96 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~---~~~~~~~Il~~~~~~  171 (354)
                      .+..... .......++..++..   ..    ....+.||+|||+|.+.  .|+.|+.+++-   ...+..+|+++|+.+
T Consensus       104 ~L~g~~~~~~~~~~~L~~~f~~~---~~----~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d  174 (318)
T 3te6_A          104 AISKENLCGDISLEALNFYITNV---PK----AKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV  174 (318)
T ss_dssp             HHSCCC--CCCCHHHHHHHHHHS---CG----GGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred             HhcCCCCCchHHHHHHHHHHHHh---hh----ccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence            0000000 001111233333221   00    12346799999999998  67777777753   234577888898875


Q ss_pred             ----cccHHHhhhc--ceeeecCCCHHHHHHHHHHHHHHcC-----------------------------------CCCC
Q 018543          172 ----KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKEG-----------------------------------LQLP  210 (354)
Q Consensus       172 ----~l~~~l~sR~--~~i~~~~~~~~~~~~~L~~~~~~~~-----------------------------------~~i~  210 (354)
                          .+.+.++||+  ..|.|+|++.+++..+|++++....                                   +.++
T Consensus       175 ~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  254 (318)
T 3te6_A          175 TIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKIN  254 (318)
T ss_dssp             CCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECC
T ss_pred             cchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccC
Confidence                2556789998  5799999999999999999987631                                   1378


Q ss_pred             HHHHHHHHH---HcCCCHHHHHHHHHHHHh
Q 018543          211 SGFATRLAE---KSNRSLRRAILSFETCRV  237 (354)
Q Consensus       211 ~~~l~~i~~---~s~gd~R~ai~~L~~~~~  237 (354)
                      +++++.+++   ..+||+|+|+++|+.+..
T Consensus       255 ~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~  284 (318)
T 3te6_A          255 NKITQLIAKNVANVSGSTEKAFKICEAAVE  284 (318)
T ss_dssp             HHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Confidence            999999999   578999999999997753

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.85  E-value=2.5e-20  Score=170.43  Aligned_cols=195  Identities=15%  Similarity=0.184  Sum_probs=139.6

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhc------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   70 (354)
                      +.++++|.+|++++|++.+++.|+.++..            ....++||+||||||||++|+++|+++.+   ..+.+++
T Consensus        74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~---~~~~i~~  150 (357)
T 3d8b_A           74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA---TFFSISA  150 (357)
T ss_dssp             TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC---EEEEEEG
T ss_pred             cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC---eEEEEeh
Confidence            57889999999999999999999988752            23335999999999999999999987521   1111111


Q ss_pred             ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-------
Q 018543           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------  143 (354)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------  143 (354)
                      ..+.                         ..........++.++.....         ..+.||||||+|.+.       
T Consensus       151 ~~l~-------------------------~~~~g~~~~~~~~~~~~a~~---------~~~~vl~iDEid~l~~~~~~~~  196 (357)
T 3d8b_A          151 SSLT-------------------------SKWVGEGEKMVRALFAVARC---------QQPAVIFIDEIDSLLSQRGDGE  196 (357)
T ss_dssp             GGGC-------------------------CSSTTHHHHHHHHHHHHHHH---------TCSEEEEEETHHHHTBC-----
T ss_pred             HHhh-------------------------ccccchHHHHHHHHHHHHHh---------cCCeEEEEeCchhhhccCCCCc
Confidence            1000                         00001111234444443332         234899999998773       


Q ss_pred             ----HHHHHHHHHHHhhc----cCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 018543          144 ----REAQHSLRRTMEKY----SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (354)
Q Consensus       144 ----~~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l  214 (354)
                          ...++.|+..++..    ..++.+|.+||.+..+.+++++||. .+.++.|+.++...++...+...+..++++.+
T Consensus       197 ~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l  276 (357)
T 3d8b_A          197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI  276 (357)
T ss_dssp             -CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHH
T ss_pred             chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHH
Confidence                23566777777642    3467788889998999999999996 78999999999999999999888888999999


Q ss_pred             HHHHHHcCCCHHHHH-HHHHH
Q 018543          215 TRLAEKSNRSLRRAI-LSFET  234 (354)
Q Consensus       215 ~~i~~~s~gd~R~ai-~~L~~  234 (354)
                      +.+++.+.|-....+ .+++.
T Consensus       277 ~~la~~t~G~s~~dl~~l~~~  297 (357)
T 3d8b_A          277 EQIVQQSDAFSGADMTQLCRE  297 (357)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHH
Confidence            999999998444333 33443

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.85  E-value=1.2e-19  Score=163.57  Aligned_cols=194  Identities=18%  Similarity=0.210  Sum_probs=138.2

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhc----------C-CC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE----------Q-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~----------~-~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      +.++.+.+|+|++|++++++.|+..+..          + .. .++||+||||||||++|+++|+++.+.  ..+.+++.
T Consensus         3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~~~   80 (322)
T 1xwi_A            3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISSS   80 (322)
T ss_dssp             EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEECC
T ss_pred             eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEEhH
Confidence            3567788999999999999999987731          1 22 249999999999999999999976211  11111110


Q ss_pred             cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--------
Q 018543           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------  143 (354)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------  143 (354)
                      .                        +.....+ .....++.++......         .+.||||||+|.+.        
T Consensus        81 ~------------------------l~~~~~g-~~~~~~~~lf~~a~~~---------~~~vl~iDEid~l~~~~~~~~~  126 (322)
T 1xwi_A           81 D------------------------LVSKWLG-ESEKLVKNLFQLAREN---------KPSIIFIDEIDSLCGSRSENES  126 (322)
T ss_dssp             S------------------------SCCSSCC-SCHHHHHHHHHHHHHT---------SSEEEEEETTTGGGCCSSSCCT
T ss_pred             H------------------------HHhhhhh-HHHHHHHHHHHHHHhc---------CCcEEEeecHHHhccccccccc
Confidence            0                        0000011 1223456665544332         34799999999882        


Q ss_pred             ---HHHHHHHHHHHhhc---cCceeEEEEecCCCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 018543          144 ---REAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR  216 (354)
Q Consensus       144 ---~~~~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~  216 (354)
                         ....+.|+..|+..   ..++.+|.+||.++.+.+++++|| ..+.+++|+.++...+++.++...+..+++..++.
T Consensus       127 ~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~  206 (322)
T 1xwi_A          127 EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRE  206 (322)
T ss_dssp             THHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence               23566777777653   456788889999999999999999 57999999999999999999887777789999999


Q ss_pred             HHHHcCCCHH-HHHHHHH
Q 018543          217 LAEKSNRSLR-RAILSFE  233 (354)
Q Consensus       217 i~~~s~gd~R-~ai~~L~  233 (354)
                      |++.+.|-.. ..-++++
T Consensus       207 la~~t~G~sgadl~~l~~  224 (322)
T 1xwi_A          207 LGRKTDGYSGADISIIVR  224 (322)
T ss_dssp             HHHTCTTCCHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHH
Confidence            9999988533 3333344

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.85  E-value=6.4e-20  Score=172.31  Aligned_cols=196  Identities=18%  Similarity=0.193  Sum_probs=139.4

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHh----------c-CCC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~----------~-~~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   70 (354)
                      ++.++.|.+|++++|++.+++.|..++.          . ... .++||+||||||||++|+++|+++.+.  ..+.+++
T Consensus       124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~--~~~~v~~  201 (444)
T 2zan_A          124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISS  201 (444)
T ss_dssp             CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS--EEEEECC
T ss_pred             eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC--CEEEEeH
Confidence            5677889999999999999999998773          1 122 349999999999999999999975211  1111111


Q ss_pred             ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-------
Q 018543           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------  143 (354)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------  143 (354)
                      ..+                     ...   ..+.. ...++.++......         .+.||||||+|.+.       
T Consensus       202 ~~l---------------------~~~---~~g~~-~~~~~~~f~~a~~~---------~~~vl~iDEid~l~~~~~~~~  247 (444)
T 2zan_A          202 SDL---------------------VSK---WLGES-EKLVKNLFQLAREN---------KPSIIFIDEIDSLCGSRSENE  247 (444)
T ss_dssp             C---------------------------------C-CCTHHHHHHHHHHS---------CSEEEEESCTTTTCCCSSCCC
T ss_pred             HHH---------------------Hhh---hcchH-HHHHHHHHHHHHHc---------CCeEEEEechHhhccCCCCcc
Confidence            100                     000   00111 12355555544332         34899999999883       


Q ss_pred             ----HHHHHHHHHHHhh---ccCceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 018543          144 ----REAQHSLRRTMEK---YSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (354)
Q Consensus       144 ----~~~~~~Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~  215 (354)
                          ...++.|+..|+.   .+.++.+|++||.+..+.+++++||. .+.++.|+.++...+++.++...+..+++..++
T Consensus       248 ~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~  327 (444)
T 2zan_A          248 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQ  327 (444)
T ss_dssp             CGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence                3466777777765   34568888899999999999999995 799999999999999999888777778899999


Q ss_pred             HHHHHcCC-CHHHHHHHHHH
Q 018543          216 RLAEKSNR-SLRRAILSFET  234 (354)
Q Consensus       216 ~i~~~s~g-d~R~ai~~L~~  234 (354)
                      .|+..+.| +.+..-++++.
T Consensus       328 ~la~~t~G~sgadl~~l~~~  347 (444)
T 2zan_A          328 ELGRKTDGYSGADISIIVRD  347 (444)
T ss_dssp             HHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHH
Confidence            99999988 34344344443

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.84  E-value=7.6e-21  Score=179.77  Aligned_cols=199  Identities=15%  Similarity=0.242  Sum_probs=141.7

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      .|.++|||.++++++|++..++.+...+.....+|+||+||||||||++++++++.+.+...... ..+           
T Consensus       169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~-l~~-----------  236 (468)
T 3pxg_A          169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI-LRD-----------  236 (468)
T ss_dssp             BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT-TSS-----------
T ss_pred             HHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh-hcC-----------
Confidence            48899999999999999999999999998877788999999999999999999998754321100 000           


Q ss_pred             ccccccccccCceeeeCCC-CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           82 IDLELTTLSSANHVELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                                ...+.++.. .........++.++..+...         ++.|+|||    .+.++++.|++.|+.  ..
T Consensus       237 ----------~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~---------~~~iLfiD----~~~~a~~~L~~~L~~--g~  291 (468)
T 3pxg_A          237 ----------KRVMTLDMGTKYRGEFEDRLKKVMDEIRQA---------GNIILFID----AAIDASNILKPSLAR--GE  291 (468)
T ss_dssp             ----------CCEECC----------CTTHHHHHHHHHTC---------CCCEEEEC----C--------CCCTTS--SS
T ss_pred             ----------CeEEEeeCCccccchHHHHHHHHHHHHHhc---------CCeEEEEe----CchhHHHHHHHhhcC--CC
Confidence                      011111111 00111112355666655432         23699999    455678888888875  45


Q ss_pred             eeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------H
Q 018543          161 CRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNRS------L  225 (354)
Q Consensus       161 ~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~s~gd------~  225 (354)
                      ..+|.+||...     .+.+++++||..+.|++|+.++...+|..++.+    .++.++++++..++..+.+.      .
T Consensus       292 v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp  371 (468)
T 3pxg_A          292 LQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP  371 (468)
T ss_dssp             CEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred             EEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCC
Confidence            78888888876     588999999999999999999999999987765    68899999999999976544      4


Q ss_pred             HHHHHHHHHHHh
Q 018543          226 RRAILSFETCRV  237 (354)
Q Consensus       226 R~ai~~L~~~~~  237 (354)
                      ++++.+++.++.
T Consensus       372 ~~ai~ll~~a~~  383 (468)
T 3pxg_A          372 DKAIDLIDEAGS  383 (468)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            579999987664

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.84  E-value=8.8e-20  Score=171.08  Aligned_cols=196  Identities=17%  Similarity=0.285  Sum_probs=138.3

Q ss_pred             cCCC-CCCCcc-c--CHHHHHHHHHHHhcCC-CCeEEEeCCCCCcHHHHHHHHHHHhcCC--CCcccccccccccccCCC
Q 018543            7 YRPK-TLDQVI-V--HQDIAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGS   79 (354)
Q Consensus         7 yrP~-~~~~~~-g--~~~~~~~l~~~l~~~~-~~~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~~~   79 (354)
                      ..|. +|++++ |  +..+...+..+.+... .++++|+||||+||||+++++++.+...  +...+.+++..       
T Consensus        98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~-------  170 (440)
T 2z4s_A           98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-------  170 (440)
T ss_dssp             CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-------
T ss_pred             CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-------
Confidence            4554 899988 5  4555666776666533 4559999999999999999999977432  11111111110       


Q ss_pred             ccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC-CCCCC-CceEEEEeCCCcCCH--HHHHHHHHHHh
Q 018543           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID-TKGKR-GFKVLVLNEVDKLSR--EAQHSLRRTME  155 (354)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~-~~~viiiDE~d~l~~--~~~~~Ll~~le  155 (354)
                                                   ...++...+....... ..... ++.++||||++.+..  ..++.|+.+++
T Consensus       171 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~  221 (440)
T 2z4s_A          171 -----------------------------FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFN  221 (440)
T ss_dssp             -----------------------------HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHH
T ss_pred             -----------------------------HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHH
Confidence                                         0111111111000000 00001 457999999999875  78889999987


Q ss_pred             hcc-CceeEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Q 018543          156 KYS-ASCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRR  227 (354)
Q Consensus       156 ~~~-~~~~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~  227 (354)
                      ... .+..+|++|+.+.    .+.++++|||   .++.+++|+.+++..+|.+.+...++.+++++++.|+..+.||+|.
T Consensus       222 ~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~  301 (440)
T 2z4s_A          222 ELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRR  301 (440)
T ss_dssp             HHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHH
T ss_pred             HHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHH
Confidence            643 4466777777654    3789999999   6899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 018543          228 AILSFETCRVQ  238 (354)
Q Consensus       228 ai~~L~~~~~~  238 (354)
                      +.+.|+.+...
T Consensus       302 l~~~L~~~~~~  312 (440)
T 2z4s_A          302 LRGAIIKLLVY  312 (440)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999976544

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.84  E-value=5e-20  Score=170.34  Aligned_cols=215  Identities=19%  Similarity=0.255  Sum_probs=143.0

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhc----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCC------CCccccccccc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP------GAEKVKVENKT   72 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~------~~~~~~~~~~~   72 (354)
                      |..+|.|   ++++|++...+.+..++..    +..++++|+||||+|||++++.+++.+...      ....+.+++..
T Consensus        12 l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   88 (387)
T 2v1u_A           12 LLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH   88 (387)
T ss_dssp             HSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred             cCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence            4567777   8899999999999988853    344459999999999999999999876322      11122222211


Q ss_pred             ccccCCCcccccc-ccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH--HHHH
Q 018543           73 WKIDAGSRNIDLE-LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--AQHS  149 (354)
Q Consensus        73 ~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~--~~~~  149 (354)
                      ..       .... +..+.  ..+.......+.........+...+.        ..+++.+|+|||+|.+...  .++.
T Consensus        89 ~~-------~~~~~~~~l~--~~l~~~~~~~~~~~~~~~~~l~~~l~--------~~~~~~vlilDEi~~l~~~~~~~~~  151 (387)
T 2v1u_A           89 RE-------TPYRVASAIA--EAVGVRVPFTGLSVGEVYERLVKRLS--------RLRGIYIIVLDEIDFLPKRPGGQDL  151 (387)
T ss_dssp             SC-------SHHHHHHHHH--HHHSCCCCSSCCCHHHHHHHHHHHHT--------TSCSEEEEEEETTTHHHHSTTHHHH
T ss_pred             CC-------CHHHHHHHHH--HHhCCCCCCCCCCHHHHHHHHHHHHh--------ccCCeEEEEEccHhhhcccCCCChH
Confidence            00       0000 00000  00000000111111111222222211        1234679999999999776  6777


Q ss_pred             HHHHHhhc-----cCceeEEEEecCC---CcccHHHhhhc--ceeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHH
Q 018543          150 LRRTMEKY-----SASCRLILCCNSS---SKVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRL  217 (354)
Q Consensus       150 Ll~~le~~-----~~~~~~Il~~~~~---~~l~~~l~sR~--~~i~~~~~~~~~~~~~L~~~~~~--~~~~i~~~~l~~i  217 (354)
                      |..+++..     ..+..+|+++|..   ..+.+.+.+|+  ..+.|+|++.+++..++...+..  .+..+++++++.+
T Consensus       152 l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l  231 (387)
T 2v1u_A          152 LYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLC  231 (387)
T ss_dssp             HHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHH
T ss_pred             HHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence            77777543     4567888999887   57889999999  67999999999999999998876  4677889999999


Q ss_pred             HHHcC---CCHHHHHHHHHHHHh
Q 018543          218 AEKSN---RSLRRAILSFETCRV  237 (354)
Q Consensus       218 ~~~s~---gd~R~ai~~L~~~~~  237 (354)
                      ++.+.   ||+|.+++.++.++.
T Consensus       232 ~~~~~~~~G~~r~~~~~l~~a~~  254 (387)
T 2v1u_A          232 AALAAREHGDARRALDLLRVAGE  254 (387)
T ss_dssp             HHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHH
Confidence            99998   999999999997654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.84  E-value=2.9e-20  Score=166.84  Aligned_cols=194  Identities=16%  Similarity=0.263  Sum_probs=131.2

Q ss_pred             CCcccCHHHHHHHHHHHhc--------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCC
Q 018543           13 DQVIVHQDIAQNLKKLVTE--------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~   78 (354)
                      ++++|++++++.+...+..              ....+++|+||||||||++++++++.+.+   ..+.+++..+.    
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~---~~~~i~~~~~~----   87 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA---PFIKVEATKFT----   87 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC---CEEEEEGGGGS----
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEcchhcc----
Confidence            3589999999988887754              23345999999999999999999997722   11222221111    


Q ss_pred             CccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHH------------
Q 018543           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA------------  146 (354)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~------------  146 (354)
                                  ..   .+    .+......++++...    .+-.......+.|++|||+|.+....            
T Consensus        88 ------------~~---~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~  144 (310)
T 1ofh_A           88 ------------EV---GY----VGKEVDSIIRDLTDS----AGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGV  144 (310)
T ss_dssp             ------------SC---CS----GGGSTTHHHHHHHHT----TTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHH
T ss_pred             ------------cC---Cc----cCccHHHHHHHHHHH----hhHHHhhccCCCEEEEEChhhcCccccccccchhHHHH
Confidence                        00   00    010111123333221    10000000135799999999997554            


Q ss_pred             HHHHHHHHhhc----------cCceeEEEEe----cCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHH-----------
Q 018543          147 QHSLRRTMEKY----------SASCRLILCC----NSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEF-----------  200 (354)
Q Consensus       147 ~~~Ll~~le~~----------~~~~~~Il~~----~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~-----------  200 (354)
                      ++.|++.|++.          ..++.+|+++    +.+..+.+++.+||. .+.|++|+.+++..++++           
T Consensus       145 ~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  224 (310)
T 1ofh_A          145 QRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKA  224 (310)
T ss_dssp             HHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH
T ss_pred             HHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHH
Confidence            88999999863          2356666664    345678999999996 599999999999999983           


Q ss_pred             HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Q 018543          201 IAKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETCR  236 (354)
Q Consensus       201 ~~~~~~~--~i~~~~l~~i~~~s--------~gd~R~ai~~L~~~~  236 (354)
                      .+...+.  .+++++++.|++.+        .||+|.+.+.++.+.
T Consensus       225 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~  270 (310)
T 1ofh_A          225 LMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM  270 (310)
T ss_dssp             HHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred             HHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence            2333453  68999999999988        899999999999765

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.84  E-value=7e-20  Score=165.56  Aligned_cols=192  Identities=18%  Similarity=0.239  Sum_probs=135.4

Q ss_pred             CCCCCcc-c--CHHHHHHHHHHHhcC--CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543           10 KTLDQVI-V--HQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (354)
Q Consensus        10 ~~~~~~~-g--~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
                      .+|++++ |  +..+...+..++...  ..++++|+||||+||||+++++++.+...+...+.+++..+.          
T Consensus         8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~----------   77 (324)
T 1l8q_A            8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA----------   77 (324)
T ss_dssp             CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH----------
T ss_pred             CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH----------
Confidence            4789997 4  566667777777664  334599999999999999999999774322111111111000          


Q ss_pred             cccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--HHHHHHHHHHhhc-cCce
Q 018543           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKY-SASC  161 (354)
Q Consensus        85 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--~~~~~Ll~~le~~-~~~~  161 (354)
                            . ....       .........+....           .++.+++|||++.+..  ..++.++..++.. ..+.
T Consensus        78 ------~-~~~~-------~~~~~~~~~~~~~~-----------~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~  132 (324)
T 1l8q_A           78 ------Q-AMVE-------HLKKGTINEFRNMY-----------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEK  132 (324)
T ss_dssp             ------H-HHHH-------HHHHTCHHHHHHHH-----------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             ------H-HHHH-------HHHcCcHHHHHHHh-----------cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCC
Confidence                  0 0000       00000011111111           1247999999999875  6788888888653 3445


Q ss_pred             eEEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 018543          162 RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (354)
Q Consensus       162 ~~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~  234 (354)
                      .+|++++++.    .+.+++.||+   .+++|+| +.++...++...+...++.+++++++.+++.+ ||+|.+.+.|+.
T Consensus       133 ~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~  210 (324)
T 1l8q_A          133 QIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKL  210 (324)
T ss_dssp             EEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHH
T ss_pred             eEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHH
Confidence            6777777553    5889999999   6899999 99999999999999999999999999999999 999999999998


Q ss_pred             HHhc
Q 018543          235 CRVQ  238 (354)
Q Consensus       235 ~~~~  238 (354)
                      ++..
T Consensus       211 ~~~~  214 (324)
T 1l8q_A          211 IKLK  214 (324)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            7755

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.83  E-value=1.9e-19  Score=157.34  Aligned_cols=197  Identities=17%  Similarity=0.246  Sum_probs=136.5

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhc-----------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~   69 (354)
                      +|.++++|.+|++++|++.+++.+...+..           ...+ +++|+||||+||||+++++++.+..+   .+.++
T Consensus         1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~i~   77 (257)
T 1lv7_A            1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTIS   77 (257)
T ss_dssp             CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC---EEEEC
T ss_pred             CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC---EEEEe
Confidence            699999999999999999998887766532           1233 49999999999999999999976221   12222


Q ss_pred             cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----
Q 018543           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (354)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----  144 (354)
                      +..+.                     .   ...+ .....++.+++....         ..+.+++|||+|.+..     
T Consensus        78 ~~~~~---------------------~---~~~~-~~~~~~~~~~~~a~~---------~~~~il~iDeid~l~~~~~~~  123 (257)
T 1lv7_A           78 GSDFV---------------------E---MFVG-VGASRVRDMFEQAKK---------AAPCIIFIDEIDAVGRQRGAG  123 (257)
T ss_dssp             SCSST---------------------T---SCCC-CCHHHHHHHHHHHHT---------TCSEEEEETTHHHHTCCCSTT
T ss_pred             HHHHH---------------------H---Hhhh-hhHHHHHHHHHHHHH---------cCCeeehhhhhhhhccCCCCC
Confidence            21111                     0   0001 111234555544332         2347999999976632     


Q ss_pred             ---------HHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 018543          145 ---------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (354)
Q Consensus       145 ---------~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~  210 (354)
                               ...+.++..++..  ..++.+|.+||.++.+.+++.+  |+ ..+.|++|+.++...+++..+.+..  ++
T Consensus       124 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~  201 (257)
T 1lv7_A          124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LA  201 (257)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BC
T ss_pred             cCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CC
Confidence                     3456677777643  3457788889999999999987  76 4689999999999999988775433  33


Q ss_pred             HH-HHHHHHHHcCC-CHHHHHHHHHHHHh
Q 018543          211 SG-FATRLAEKSNR-SLRRAILSFETCRV  237 (354)
Q Consensus       211 ~~-~l~~i~~~s~g-d~R~ai~~L~~~~~  237 (354)
                      ++ .+..++..+.| +.|...++++.++.
T Consensus       202 ~~~~~~~la~~~~G~~~~dl~~l~~~a~~  230 (257)
T 1lv7_A          202 PDIDAAIIARGTPGFSGADLANLVNEAAL  230 (257)
T ss_dssp             TTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            33 36778888999 99988888776554

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.83  E-value=4.7e-20  Score=165.65  Aligned_cols=201  Identities=16%  Similarity=0.271  Sum_probs=138.5

Q ss_pred             CCcccCHHHHHHHHHHHhcC--------CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543           13 DQVIVHQDIAQNLKKLVTEQ--------DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~~--------~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      ++++|++.+++.+...+..+        +.. +++|+||||||||++|+++++.+.+.....+.+++..+.  .  ..  
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~--~--~~--   90 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM--E--KH--   90 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC--S--TT--
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc--c--cc--
Confidence            46789999999888888753        223 499999999999999999999876544333333332221  0  00  


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----  158 (354)
                       ..     ...+...+...+......+.+   .+..         ....+++|||+|.++++.++.|++.|++..     
T Consensus        91 -~~-----~~l~g~~~~~~~~~~~~~~~~---~~~~---------~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~  152 (311)
T 4fcw_A           91 -AV-----SRLIGAPPGYVGYEEGGQLTE---AVRR---------RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSH  152 (311)
T ss_dssp             -HH-----HHHHCCCTTSTTTTTCCHHHH---HHHH---------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTT
T ss_pred             -cH-----HHhcCCCCccccccccchHHH---HHHh---------CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCC
Confidence             00     000111111111111111222   2222         123799999999999999999999998754     


Q ss_pred             ------CceeEEEEecC--------------------------CCcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHc
Q 018543          159 ------ASCRLILCCNS--------------------------SSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE  205 (354)
Q Consensus       159 ------~~~~~Il~~~~--------------------------~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~  205 (354)
                            .++.+|++||.                          ...+.+++.+|| .++.|.||+.+++..++...+.+.
T Consensus       153 ~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~  232 (311)
T 4fcw_A          153 GRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL  232 (311)
T ss_dssp             SCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred             CCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence                  35668888888                          336788999999 689999999999999998866542


Q ss_pred             ---------CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Q 018543          206 ---------GLQLPSGFATRLAEKS---NRSLRRAILSFETCRV  237 (354)
Q Consensus       206 ---------~~~i~~~~l~~i~~~s---~gd~R~ai~~L~~~~~  237 (354)
                               .+.+++++++.+++.+   .|++|.+.+.++.++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~  276 (311)
T 4fcw_A          233 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE  276 (311)
T ss_dssp             HHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred             HHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence                     3568899999999976   4999999998886653

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.83  E-value=1.1e-19  Score=168.12  Aligned_cols=218  Identities=15%  Similarity=0.137  Sum_probs=140.6

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhc----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCC--------CCcccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP--------GAEKVKVE   69 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~--------~~~~~~~~   69 (354)
                      .|.++|+|   ++++|+++..+.+..++..    +..++++|+||||+|||++++.+++.+...        ....+.++
T Consensus        12 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~   88 (384)
T 2qby_B           12 FIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN   88 (384)
T ss_dssp             TTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred             hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence            57888999   8899999888877766643    344469999999999999999999976332        11112222


Q ss_pred             cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHH-HH
Q 018543           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-QH  148 (354)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~-~~  148 (354)
                      +....   .+...  -+..+. ...........+......+..+...+ .        ..+ .+|+|||+|.+.... ++
T Consensus        89 ~~~~~---~~~~~--~~~~l~-~~l~~~~~~~~~~~~~~~~~~l~~~l-~--------~~~-~vlilDEi~~l~~~~~~~  152 (384)
T 2qby_B           89 CREVG---GTPQA--VLSSLA-GKLTGFSVPKHGINLGEYIDKIKNGT-R--------NIR-AIIYLDEVDTLVKRRGGD  152 (384)
T ss_dssp             HHHHC---SCHHH--HHHHHH-HHHHCSCCCSSSSCTHHHHHHHHHHH-S--------SSC-EEEEEETTHHHHHSTTSH
T ss_pred             CccCC---CCHHH--HHHHHH-HHhcCCCCCCCCCCHHHHHHHHHHHh-c--------cCC-CEEEEECHHHhccCCCCc
Confidence            11000   00000  000000 00000000111111111122222111 1        112 399999999886542 55


Q ss_pred             H-HHHHHhhccCceeEEEEecCC---CcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHc
Q 018543          149 S-LRRTMEKYSASCRLILCCNSS---SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAEKS  221 (354)
Q Consensus       149 ~-Ll~~le~~~~~~~~Il~~~~~---~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~--~~~~i~~~~l~~i~~~s  221 (354)
                      . +..+++.. .++.+|++++..   ..+.+++++|+ ..++|+|++.+++..++..++..  .+..+++++++.+++.+
T Consensus       153 ~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~  231 (384)
T 2qby_B          153 IVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS  231 (384)
T ss_dssp             HHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHH
T ss_pred             eeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHH
Confidence            5 55555544 678899999987   57899999994 79999999999999999998875  35678899999999998


Q ss_pred             C---CCHHHHHHHHHHHHhcC
Q 018543          222 N---RSLRRAILSFETCRVQQ  239 (354)
Q Consensus       222 ~---gd~R~ai~~L~~~~~~~  239 (354)
                      .   ||+|.+++.++.+....
T Consensus       232 ~~~~G~~r~a~~~l~~a~~~a  252 (384)
T 2qby_B          232 AKEHGDARKAVNLLFRAAQLA  252 (384)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHT
T ss_pred             HhccCCHHHHHHHHHHHHHHh
Confidence            8   99999999999876543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=5.1e-19  Score=160.93  Aligned_cols=181  Identities=20%  Similarity=0.284  Sum_probs=125.7

Q ss_pred             cccCCCCCCCcccCHHHHHHHHHHHhc-----------CC-CCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543            5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QD-CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      ++-...+|+|+.|.+++++.|+..+.-           |- .|. +|||||||||||++|+++|+++..+   .+.+.+.
T Consensus       140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~---f~~v~~s  216 (405)
T 4b4t_J          140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK---FIRVSGA  216 (405)
T ss_dssp             ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE---EEEEEGG
T ss_pred             cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC---ceEEEhH
Confidence            444457899999999999999987742           33 333 9999999999999999999987221   1111111


Q ss_pred             cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-------
Q 018543           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------  144 (354)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------  144 (354)
                      .+                        . +.+-......+++++.......         +.||||||+|.+..       
T Consensus       217 ~l------------------------~-sk~vGese~~vr~lF~~Ar~~a---------P~IIFiDEiDai~~~R~~~~~  262 (405)
T 4b4t_J          217 EL------------------------V-QKYIGEGSRMVRELFVMAREHA---------PSIIFMDEIDSIGSTRVEGSG  262 (405)
T ss_dssp             GG------------------------S-CSSTTHHHHHHHHHHHHHHHTC---------SEEEEEESSSCCTTSCSCSSS
T ss_pred             Hh------------------------h-ccccchHHHHHHHHHHHHHHhC---------CceEeeecchhhccCCCCCCC
Confidence            00                        0 0111112235777776655543         37999999998831       


Q ss_pred             ----H---HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543          145 ----E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (354)
Q Consensus       145 ----~---~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~  212 (354)
                          .   ..+.|+..|+..  ..++.+|.+||+++.+++++++  |+. .|+|+.|+.++...+++.++.+..+. ++-
T Consensus       263 ~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dv  341 (405)
T 4b4t_J          263 GGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGI  341 (405)
T ss_dssp             GGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSC
T ss_pred             CCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccC
Confidence                1   344566666543  4467788999999999999998  774 79999999999999999887654432 122


Q ss_pred             HHHHHHHHcCC
Q 018543          213 FATRLAEKSNR  223 (354)
Q Consensus       213 ~l~~i~~~s~g  223 (354)
                      .++.+++.+.|
T Consensus       342 dl~~lA~~t~G  352 (405)
T 4b4t_J          342 NLRKVAEKMNG  352 (405)
T ss_dssp             CHHHHHHHCCS
T ss_pred             CHHHHHHHCCC
Confidence            47888888776

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.82  E-value=2.6e-18  Score=150.31  Aligned_cols=193  Identities=18%  Similarity=0.223  Sum_probs=126.0

Q ss_pred             CCCCCCcccCHHHHHHHHHHHhc------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543            9 PKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus         9 P~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      +.+|++++|++++++.++.++..            ...++++|+||||+|||++|+++++++..+   .+.+++..+.  
T Consensus         2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~~~~~~~~--   76 (262)
T 2qz4_A            2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP---FLAMAGAEFV--   76 (262)
T ss_dssp             CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC---EEEEETTTTS--
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEechHHHH--
Confidence            46899999999999888876642            122349999999999999999999976221   1111111000  


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------------H
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------R  144 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------------~  144 (354)
                                             ..........++.++......         .+.+|+|||+|.+.            .
T Consensus        77 -----------------------~~~~~~~~~~~~~~~~~a~~~---------~~~vl~iDeid~l~~~~~~~~~~~~~~  124 (262)
T 2qz4_A           77 -----------------------EVIGGLGAARVRSLFKEARAR---------APCIVYIDEIDAVGKKRSTTMSGFSNT  124 (262)
T ss_dssp             -----------------------SSSTTHHHHHHHHHHHHHHHT---------CSEEEEEECC-----------------
T ss_pred             -----------------------hhccChhHHHHHHHHHHHHhc---------CCeEEEEeCcchhhccccccccCccch
Confidence                                   001111112344444443321         24799999999983            2


Q ss_pred             HHHHHHHHHH---hh--ccCceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HH
Q 018543          145 EAQHSLRRTM---EK--YSASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-AT  215 (354)
Q Consensus       145 ~~~~~Ll~~l---e~--~~~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~-l~  215 (354)
                      ..+..+..++   +.  ...++.+|.++|.+..+.+++.+  |+ ..++|++|+.++...+++..+.+.++..+.+. ..
T Consensus       125 ~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~  204 (262)
T 2qz4_A          125 EEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQ  204 (262)
T ss_dssp             --CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHH
T ss_pred             hHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHH
Confidence            3334444444   33  23467788889988889999998  88 57999999999999999999998888877664 57


Q ss_pred             HHHHHcCCC-HHHHHHHHHHHHhc
Q 018543          216 RLAEKSNRS-LRRAILSFETCRVQ  238 (354)
Q Consensus       216 ~i~~~s~gd-~R~ai~~L~~~~~~  238 (354)
                      .++..+.|. .|...++++.++..
T Consensus       205 ~l~~~~~g~~~~~l~~l~~~a~~~  228 (262)
T 2qz4_A          205 RLAELTPGFSGADIANICNEAALH  228 (262)
T ss_dssp             HHHHTCTTCCHHHHHHHHHHHHTC
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHH
Confidence            888888774 44555566655543

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.81  E-value=1.2e-18  Score=158.01  Aligned_cols=251  Identities=15%  Similarity=0.164  Sum_probs=157.4

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      .|+++++|..+++++|++++++.+...+..+.  |++|+||||+|||++++++++.+.++   ...+.+.      +.. 
T Consensus        16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~~~---~~~i~~~------~~~-   83 (331)
T 2r44_A           16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMDLD---FHRIQFT------PDL-   83 (331)
T ss_dssp             HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTTCC---EEEEECC------TTC-
T ss_pred             HHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhCCC---eEEEecC------CCC-
Confidence            48999999999999999999998888887754  59999999999999999999976221   0111100      000 


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc----
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY----  157 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~----  157 (354)
                         ........  ..+... .+...           ....+      -...+++|||++.+++..++.|++.|++.    
T Consensus        84 ---~~~~l~g~--~~~~~~-~~~~~-----------~~~g~------l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~  140 (331)
T 2r44_A           84 ---LPSDLIGT--MIYNQH-KGNFE-----------VKKGP------VFSNFILADEVNRSPAKVQSALLECMQEKQVTI  140 (331)
T ss_dssp             ---CHHHHHEE--EEEETT-TTEEE-----------EEECT------TCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred             ---ChhhcCCc--eeecCC-CCceE-----------eccCc------ccccEEEEEccccCCHHHHHHHHHHHhcCceee
Confidence               00000000  000000 00000           00000      01269999999999999999999999863    


Q ss_pred             -------cCceeEEEEecCCC-----cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHH--------------------
Q 018543          158 -------SASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK--------------------  204 (354)
Q Consensus       158 -------~~~~~~Il~~~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~--------------------  204 (354)
                             +....+|.++|...     .+.+++.+||. .+.+++|+.++..++|++.+..                    
T Consensus       141 ~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~  220 (331)
T 2r44_A          141 GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRN  220 (331)
T ss_dssp             TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHH
T ss_pred             CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHH
Confidence                   23344554444322     38899999998 4999999999999999887654                    


Q ss_pred             --cCCCCCHHHHHHHHHHc-----CC---------------CHHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHH
Q 018543          205 --EGLQLPSGFATRLAEKS-----NR---------------SLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIAS  262 (354)
Q Consensus       205 --~~~~i~~~~l~~i~~~s-----~g---------------d~R~ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (354)
                        .++.+++++++.+++.+     .+               +.|.++++++.+..... +.....+    ..+.+.+++.
T Consensus       221 ~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~-l~g~~~v----~~~dv~~~~~  295 (331)
T 2r44_A          221 EINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAF-FNNRDYV----LPEDIKEVAY  295 (331)
T ss_dssp             HHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHH-HTTCSBC----CHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHH-HcCCCCC----CHHHHHHHHH
Confidence              26778999999988754     22               69999998875543211 0000101    1244555666


Q ss_pred             HHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 018543          263 DIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE  300 (354)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~  300 (354)
                      .++.+.......        ....+.++.+|+..+...
T Consensus       296 ~vl~~r~~~~~~--------~~~~~~~~~~i~~~i~~~  325 (331)
T 2r44_A          296 DILNHRIILNYE--------AEAEGISTRQIIETILRK  325 (331)
T ss_dssp             HHHTTTSEECHH--------HHHTTCCHHHHHHHHHHH
T ss_pred             HHhHhhccCCHH--------HHhcCCCHHHHHHHHHhc
Confidence            666543222111        112567777777766543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.80  E-value=6.4e-19  Score=156.30  Aligned_cols=192  Identities=18%  Similarity=0.253  Sum_probs=129.1

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhc-------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   70 (354)
                      ++...+.+|++++|++.+++.+..++..             ....+++|+||||||||++++++++.+..+   .+.+.+
T Consensus         8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~---~~~v~~   84 (285)
T 3h4m_A            8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT---FIRVVG   84 (285)
T ss_dssp             EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE---EEEEEG
T ss_pred             ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEeh
Confidence            3455667899999999999999887743             233459999999999999999999975211   111111


Q ss_pred             ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC--------
Q 018543           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--------  142 (354)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l--------  142 (354)
                      ..+                        .. .........++..+......         .+.||+|||+|.+        
T Consensus        85 ~~~------------------------~~-~~~~~~~~~~~~~~~~~~~~---------~~~vl~iDEid~l~~~~~~~~  130 (285)
T 3h4m_A           85 SEL------------------------VK-KFIGEGASLVKDIFKLAKEK---------APSIIFIDEIDAIAAKRTDAL  130 (285)
T ss_dssp             GGG------------------------CC-CSTTHHHHHHHHHHHHHHHT---------CSEEEEEETTHHHHBCCSSSC
T ss_pred             HHH------------------------HH-hccchHHHHHHHHHHHHHHc---------CCeEEEEECHHHhcccCcccc
Confidence            100                        00 00111112344444443332         3479999999987        


Q ss_pred             ---CHHHHHHHHHHHhh-----ccCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543          143 ---SREAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (354)
Q Consensus       143 ---~~~~~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~  211 (354)
                         +...+..+...++.     ...++.+|++||.++.+.+++.+  |+. .+.|++|+.++...+++..+...++. ++
T Consensus       131 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~  209 (285)
T 3h4m_A          131 TGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-ED  209 (285)
T ss_dssp             CGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TT
T ss_pred             CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-Cc
Confidence               45566777766653     23467888899999999999998  774 79999999999999999887655543 23


Q ss_pred             HHHHHHHHHcCC-CHHHHHHHHH
Q 018543          212 GFATRLAEKSNR-SLRRAILSFE  233 (354)
Q Consensus       212 ~~l~~i~~~s~g-d~R~ai~~L~  233 (354)
                      ..+..++..+.| ..|...++++
T Consensus       210 ~~~~~l~~~~~g~~~~~i~~l~~  232 (285)
T 3h4m_A          210 VNLEEIAKMTEGCVGAELKAICT  232 (285)
T ss_dssp             CCHHHHHHHCTTCCHHHHHHHHH
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHH
Confidence            347788888777 3444444444

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2e-18  Score=157.51  Aligned_cols=182  Identities=18%  Similarity=0.262  Sum_probs=125.2

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~   69 (354)
                      -+++-...+|+|+.|.+++++.|+..+..           | ..|. +|||||||||||++|+++|+++..+   .+.+.
T Consensus       172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~---fi~v~  248 (437)
T 4b4t_I          172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT---FLRIV  248 (437)
T ss_dssp             EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE---EEEEE
T ss_pred             eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC---EEEEE
Confidence            34555667999999999999999887641           3 2333 9999999999999999999987221   11111


Q ss_pred             cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----
Q 018543           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (354)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----  144 (354)
                      +..+                        . +.+-......+++++.......         +.||||||+|.+..     
T Consensus       249 ~s~l------------------------~-sk~vGesek~ir~lF~~Ar~~a---------P~IIfiDEiDai~~~R~~~  294 (437)
T 4b4t_I          249 GSEL------------------------I-QKYLGDGPRLCRQIFKVAGENA---------PSIVFIDEIDAIGTKRYDS  294 (437)
T ss_dssp             SGGG------------------------C-CSSSSHHHHHHHHHHHHHHHTC---------SEEEEEEEESSSSCCCSCS
T ss_pred             HHHh------------------------h-hccCchHHHHHHHHHHHHHhcC---------CcEEEEehhhhhcccCCCC
Confidence            1100                        0 0111111235677776655543         37999999998721     


Q ss_pred             ------H---HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 018543          145 ------E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (354)
Q Consensus       145 ------~---~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~  210 (354)
                            .   ....|+..|+..  ..++.+|++||+++.+++++.+  |+. .|+|+.|+.++...+++.++.+..+  +
T Consensus       295 ~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l--~  372 (437)
T 4b4t_I          295 NSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL--S  372 (437)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB--C
T ss_pred             CCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC--C
Confidence                  2   334555555543  3467889999999999999998  774 6999999999999999988765443  3


Q ss_pred             HH-HHHHHHHHcCC
Q 018543          211 SG-FATRLAEKSNR  223 (354)
Q Consensus       211 ~~-~l~~i~~~s~g  223 (354)
                      ++ .++.|++.+.|
T Consensus       373 ~dvdl~~LA~~T~G  386 (437)
T 4b4t_I          373 EDVNLETLVTTKDD  386 (437)
T ss_dssp             SCCCHHHHHHHCCS
T ss_pred             CcCCHHHHHHhCCC
Confidence            32 37888887766

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.80  E-value=8.4e-20  Score=151.83  Aligned_cols=171  Identities=15%  Similarity=0.278  Sum_probs=115.1

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      .|.++|+|.+|++++|+++.++.+..++..+...+++|+||+|+|||++++.+++.+.+...... ..+..+.       
T Consensus        11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~-~~~~~~~-------   82 (195)
T 1jbk_A           11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG-LKGRRVL-------   82 (195)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGG-GTTCEEE-------
T ss_pred             HHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchh-hcCCcEE-------
Confidence            58899999999999999999999999998877777999999999999999999998754221100 0000000       


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--------HHHHHHHHH
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHSLRRT  153 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~~Ll~~  153 (354)
                       .+.+...       .............+++++..+...        .++.+++|||+|.+..        ..++.|...
T Consensus        83 -~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~  146 (195)
T 1jbk_A           83 -ALDMGAL-------VAGAKYRGEFEERLKGVLNDLAKQ--------EGNVILFIDELHTMVGAGKADGAMDAGNMLKPA  146 (195)
T ss_dssp             -EECHHHH-------HTTTCSHHHHHHHHHHHHHHHHHS--------TTTEEEEEETGGGGTT------CCCCHHHHHHH
T ss_pred             -EeeHHHH-------hccCCccccHHHHHHHHHHHHhhc--------CCCeEEEEeCHHHHhccCcccchHHHHHHHHHh
Confidence             0000000       000000000111234444433331        2347999999999853        236677777


Q ss_pred             HhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHH
Q 018543          154 MEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVL  198 (354)
Q Consensus       154 le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L  198 (354)
                      ++.  .+..+|++++.+.     .+.+++++||..+.|++|+.++..++|
T Consensus       147 ~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          147 LAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHT--TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             hcc--CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence            765  4577888888775     678999999999999999999987764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.79  E-value=4.2e-19  Score=177.85  Aligned_cols=199  Identities=15%  Similarity=0.240  Sum_probs=142.3

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      .|+++++|..+++++|+++.++.+...+.....+|+||+||||||||++|+++|+.+.+.+......++.          
T Consensus       169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~----------  238 (758)
T 3pxi_A          169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR----------  238 (758)
T ss_dssp             BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC----------
T ss_pred             HHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe----------
Confidence            4889999999999999999999999999888878899999999999999999999875533221111111          


Q ss_pred             ccccccccccCceeeeCC-CCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           82 IDLELTTLSSANHVELSP-SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                                  .+.++. ..+.......++.++..+...         ++.|+|||    ...+.++.|+..|+.  ..
T Consensus       239 ------------~~~~~~g~~~~G~~e~~l~~~~~~~~~~---------~~~iLfiD----~~~~~~~~L~~~l~~--~~  291 (758)
T 3pxi_A          239 ------------VMTLDMGTKYRGEFEDRLKKVMDEIRQA---------GNIILFID----AAIDASNILKPSLAR--GE  291 (758)
T ss_dssp             ------------EECC----------CTTHHHHHHHHHTC---------CCCEEEEC----C--------CCCTTS--SS
T ss_pred             ------------EEEecccccccchHHHHHHHHHHHHHhc---------CCEEEEEc----CchhHHHHHHHHHhc--CC
Confidence                        111111 011111112456666665442         34799999    445678888888874  45


Q ss_pred             eeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CH
Q 018543          161 CRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR------SL  225 (354)
Q Consensus       161 ~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~s~g------d~  225 (354)
                      ..+|.+||...     .+.+++++||..+.|++|+.+++..+|..++.+    .++.++++++..++..+.+      ..
T Consensus       292 v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p  371 (758)
T 3pxi_A          292 LQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP  371 (758)
T ss_dssp             CEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred             EEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCC
Confidence            78888888877     689999999999999999999999999977665    6788999999999987643      34


Q ss_pred             HHHHHHHHHHHh
Q 018543          226 RRAILSFETCRV  237 (354)
Q Consensus       226 R~ai~~L~~~~~  237 (354)
                      ++++.+++.++.
T Consensus       372 ~~ai~ll~~a~~  383 (758)
T 3pxi_A          372 DKAIDLIDEAGS  383 (758)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            788988886654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.9e-18  Score=158.34  Aligned_cols=182  Identities=19%  Similarity=0.254  Sum_probs=123.9

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHh-----------cC-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~-----------~~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   70 (354)
                      .++-.+.+|+|+.|.+++++.|+..+.           .| ..|. +|||||||||||++|+++|+++..+   .+.+.+
T Consensus       172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~---f~~v~~  248 (434)
T 4b4t_M          172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT---FLKLAA  248 (434)
T ss_dssp             EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEG
T ss_pred             cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC---EEEEeh
Confidence            344456799999999999999987653           13 2333 9999999999999999999987221   111111


Q ss_pred             ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-------
Q 018543           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------  143 (354)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-------  143 (354)
                      ..+                        . +.+-......++.++.......         +.||||||+|.+.       
T Consensus       249 s~l------------------------~-~~~vGese~~ir~lF~~A~~~a---------P~IifiDEiDal~~~R~~~~  294 (434)
T 4b4t_M          249 PQL------------------------V-QMYIGEGAKLVRDAFALAKEKA---------PTIIFIDELDAIGTKRFDSE  294 (434)
T ss_dssp             GGG------------------------C-SSCSSHHHHHHHHHHHHHHHHC---------SEEEEEECTHHHHCCCSSGG
T ss_pred             hhh------------------------h-hcccchHHHHHHHHHHHHHhcC---------CeEEeecchhhhhhccCCCC
Confidence            100                        0 0111112235677776655543         3799999998761       


Q ss_pred             ----HH---HHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543          144 ----RE---AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (354)
Q Consensus       144 ----~~---~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~  211 (354)
                          ..   ..+.|+..|+...  .++.+|.+||+++.+++++.+  |+. .|+|+.|+.++...+++.++.+..+.- +
T Consensus       295 ~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-d  373 (434)
T 4b4t_M          295 KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDD-D  373 (434)
T ss_dssp             GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCS-C
T ss_pred             CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCC-c
Confidence                12   2345666665543  456788899999999999988  764 699999999999999998887654421 1


Q ss_pred             HHHHHHHHHcCC
Q 018543          212 GFATRLAEKSNR  223 (354)
Q Consensus       212 ~~l~~i~~~s~g  223 (354)
                      -.++.|++.+.|
T Consensus       374 vdl~~lA~~t~G  385 (434)
T 4b4t_M          374 INWQELARSTDE  385 (434)
T ss_dssp             CCHHHHHHHCSS
T ss_pred             CCHHHHHHhCCC
Confidence            137788888766

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=6e-18  Score=155.81  Aligned_cols=189  Identities=17%  Similarity=0.255  Sum_probs=127.0

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   70 (354)
                      +++-...+|+|+.|.+++++.|+..+.-           | +.|. +|||||||||||++|+++|+++..+   .+.+.+
T Consensus       200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~---fi~vs~  276 (467)
T 4b4t_H          200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT---FIRVIG  276 (467)
T ss_dssp             EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE---EEEEEG
T ss_pred             ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC---eEEEEh
Confidence            3444446999999999999999887631           3 3333 9999999999999999999987321   111111


Q ss_pred             ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH------
Q 018543           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------  144 (354)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------  144 (354)
                      ..+                        . +..-......+++++.......         +.||||||+|.+..      
T Consensus       277 s~L------------------------~-sk~vGesek~ir~lF~~Ar~~a---------P~IIfiDEiDai~~~R~~~~  322 (467)
T 4b4t_H          277 SEL------------------------V-QKYVGEGARMVRELFEMARTKK---------ACIIFFDEIDAVGGARFDDG  322 (467)
T ss_dssp             GGG------------------------C-CCSSSHHHHHHHHHHHHHHHTC---------SEEEEEECCTTTSBCCSSSS
T ss_pred             HHh------------------------h-cccCCHHHHHHHHHHHHHHhcC---------CceEeecccccccccccCcC
Confidence            100                        0 0111112235777776655543         37999999998731      


Q ss_pred             -----H---HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543          145 -----E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (354)
Q Consensus       145 -----~---~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~  211 (354)
                           .   ..+.|+..|+..  ..++.+|++||+++.+.+++++  |+. .|+|+.|+.++...+|+.++.+..+.- +
T Consensus       323 ~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-d  401 (467)
T 4b4t_H          323 AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-G  401 (467)
T ss_dssp             CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-S
T ss_pred             CCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-C
Confidence                 1   234455555533  3457788899999999999987  774 699999999999999998876543321 1


Q ss_pred             HHHHHHHHHcCC----CHHHHHH
Q 018543          212 GFATRLAEKSNR----SLRRAIL  230 (354)
Q Consensus       212 ~~l~~i~~~s~g----d~R~ai~  230 (354)
                      -.++.|++.+.|    |++.+.+
T Consensus       402 vdl~~LA~~T~GfSGADI~~l~~  424 (467)
T 4b4t_H          402 IRWELISRLCPNSTGAELRSVCT  424 (467)
T ss_dssp             CCHHHHHHHCCSCCHHHHHHHHH
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHH
Confidence            237788888776    4444443

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=7.6e-18  Score=155.42  Aligned_cols=181  Identities=20%  Similarity=0.284  Sum_probs=123.6

Q ss_pred             cccCCCCCCCcccCHHHHHHHHHHHhc-----------CC-CCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543            5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QD-CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      ++-...+|+|+.|.+++++.|+..+..           |- .|. +|||||||||||++|+++|+++..+   .+.+++.
T Consensus       164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~---~~~v~~~  240 (428)
T 4b4t_K          164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA---FIRVNGS  240 (428)
T ss_dssp             ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE---EEEEEGG
T ss_pred             CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEecc
Confidence            344446899999999999998887641           32 333 9999999999999999999987221   1111111


Q ss_pred             cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--------
Q 018543           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------  143 (354)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------  143 (354)
                      .+                        . +..-......+++++.......         +.|++|||+|.+.        
T Consensus       241 ~l------------------------~-~~~~Ge~e~~ir~lF~~A~~~a---------P~IifiDEiD~i~~~R~~~~~  286 (428)
T 4b4t_K          241 EF------------------------V-HKYLGEGPRMVRDVFRLARENA---------PSIIFIDEVDSIATKRFDAQT  286 (428)
T ss_dssp             GT------------------------C-CSSCSHHHHHHHHHHHHHHHTC---------SEEEEEECTHHHHCSCSSSCS
T ss_pred             hh------------------------h-ccccchhHHHHHHHHHHHHHcC---------CCeeechhhhhhhccccCCCC
Confidence            00                        0 0111112235777776655543         3799999998651        


Q ss_pred             ------HHHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeec-CCCHHHHHHHHHHHHHHcCCCCCH
Q 018543          144 ------REAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRIN-SPTEEQIVKVLEFIAKKEGLQLPS  211 (354)
Q Consensus       144 ------~~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~-~~~~~~~~~~L~~~~~~~~~~i~~  211 (354)
                            ....+.|+..|+..  ..++.+|++||+++.+++++.+  |+. .|+|+ +|+.++...+++.++.+..+. ++
T Consensus       287 ~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~  365 (428)
T 4b4t_K          287 GSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PE  365 (428)
T ss_dssp             CCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TT
T ss_pred             CCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cc
Confidence                  12355677777653  3467889999999999999998  664 69996 789999999999888754432 12


Q ss_pred             HHHHHHHHHcCC
Q 018543          212 GFATRLAEKSNR  223 (354)
Q Consensus       212 ~~l~~i~~~s~g  223 (354)
                      ..++.++..+.|
T Consensus       366 ~dl~~lA~~t~G  377 (428)
T 4b4t_K          366 ADLDSLIIRNDS  377 (428)
T ss_dssp             CCHHHHHHHTTT
T ss_pred             cCHHHHHHHCCC
Confidence            237888888766

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1e-17  Score=154.85  Aligned_cols=185  Identities=16%  Similarity=0.212  Sum_probs=125.3

Q ss_pred             CCCCCCCcccCHHHHHHHHHHHhc-----------CC-CCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543            8 RPKTLDQVIVHQDIAQNLKKLVTE-----------QD-CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (354)
Q Consensus         8 rP~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~   74 (354)
                      ...+|+|+.|.+++++.|+..+..           |- +|. +|||||||||||++|+++|+++..+   .+.+.+..+ 
T Consensus       176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~---~~~v~~s~l-  251 (437)
T 4b4t_L          176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN---FIFSPASGI-  251 (437)
T ss_dssp             CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEGGGT-
T ss_pred             CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEehhhh-
Confidence            345899999999999999887742           32 333 9999999999999999999987221   111111100 


Q ss_pred             ccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH----------
Q 018543           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------  144 (354)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~----------  144 (354)
                                             . +.+.......++.++.......         +.||||||+|.+..          
T Consensus       252 -----------------------~-sk~~Gese~~ir~~F~~A~~~~---------P~IifiDEiDai~~~R~~~~~~~~  298 (437)
T 4b4t_L          252 -----------------------V-DKYIGESARIIREMFAYAKEHE---------PCIIFMDEVDAIGGRRFSEGTSAD  298 (437)
T ss_dssp             -----------------------C-CSSSSHHHHHHHHHHHHHHHSC---------SEEEEEECCCSSSCCCSSSCCSST
T ss_pred             -----------------------c-cccchHHHHHHHHHHHHHHhcC---------CceeeeecccccccccccCCCCcc
Confidence                                   0 0111111234666665554433         48999999998731          


Q ss_pred             ----HHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhh--c-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 018543          145 ----EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (354)
Q Consensus       145 ----~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~  215 (354)
                          ...+.|+..|+..  ..++.+|++||+++.++++++++  + ..|+|+.|+.++...+++.++.+.... ++-.++
T Consensus       299 ~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~  377 (437)
T 4b4t_L          299 REIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFE  377 (437)
T ss_dssp             THHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHH
T ss_pred             hHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHH
Confidence                1345677777644  34578999999999999999886  4 369999999999999999888754432 122378


Q ss_pred             HHHHHcCC----CHHHHHH
Q 018543          216 RLAEKSNR----SLRRAIL  230 (354)
Q Consensus       216 ~i~~~s~g----d~R~ai~  230 (354)
                      .+++.+.|    |++.+.+
T Consensus       378 ~lA~~t~G~sGADi~~l~~  396 (437)
T 4b4t_L          378 AAVKMSDGFNGADIRNCAT  396 (437)
T ss_dssp             HHHHTCCSCCHHHHHHHHH
T ss_pred             HHHHhCCCCCHHHHHHHHH
Confidence            88888776    4444443

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.78  E-value=8.1e-19  Score=177.68  Aligned_cols=205  Identities=18%  Similarity=0.265  Sum_probs=139.9

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      .|+++|||.+|++++|+++.++.+...+..+..++++|+||||+|||++++.+++.+.+..... ...+           
T Consensus       159 ~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~-~l~~-----------  226 (854)
T 1qvr_A          159 DLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE-GLKG-----------  226 (854)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT-TSTT-----------
T ss_pred             hHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCch-hhcC-----------
Confidence            4889999999999999999999999998887777899999999999999999999874322110 0000           


Q ss_pred             ccccccccccCceeeeCCCCC------CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--------HHHH
Q 018543           82 IDLELTTLSSANHVELSPSDA------GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------REAQ  147 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------~~~~  147 (354)
                                ...+.++....      .......++.++..+...        .++.|+||||+|.+.        .++.
T Consensus       227 ----------~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~--------~~~~iL~IDEi~~l~~~~~~~g~~~~~  288 (854)
T 1qvr_A          227 ----------KRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS--------QGEVILFIDELHTVVGAGKAEGAVDAG  288 (854)
T ss_dssp             ----------CEEEEECC-----------CHHHHHHHHHHHHHTT--------CSSEEEEECCC----------------
T ss_pred             ----------CeEEEeehHHhhccCccchHHHHHHHHHHHHHHhc--------CCCeEEEEecHHHHhccCCccchHHHH
Confidence                      01112221111      111112344555444331        235799999999986        4456


Q ss_pred             HHHHHHHhhccCceeEEEEecCCC----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 018543          148 HSLRRTMEKYSASCRLILCCNSSS----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE  219 (354)
Q Consensus       148 ~~Ll~~le~~~~~~~~Il~~~~~~----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~  219 (354)
                      +.|...++.  ....+|+++|.+.    .+.+++.+||..+.|++|+.++...+|+..+..    .++.++++++..+++
T Consensus       289 ~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~  366 (854)
T 1qvr_A          289 NMLKPALAR--GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAAT  366 (854)
T ss_dssp             ---HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred             HHHHHHHhC--CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHH
Confidence            678888865  3467888877654    467899999999999999999999999876653    478899999999999


Q ss_pred             HcCCC------HHHHHHHHHHHHhc
Q 018543          220 KSNRS------LRRAILSFETCRVQ  238 (354)
Q Consensus       220 ~s~gd------~R~ai~~L~~~~~~  238 (354)
                      .+.|.      .++++.+++.++..
T Consensus       367 ls~r~i~~~~lp~kai~lldea~a~  391 (854)
T 1qvr_A          367 LSHRYITERRLPDKAIDLIDEAAAR  391 (854)
T ss_dssp             HHHHHCCSSCTHHHHHHHHHHHHHH
T ss_pred             HHhhhcccccChHHHHHHHHHHHHH
Confidence            77442      78899988866543

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.78  E-value=6.7e-19  Score=160.72  Aligned_cols=230  Identities=16%  Similarity=0.142  Sum_probs=133.1

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc-ccccccccccccCCCccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE-KVKVENKTWKIDAGSRNI   82 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~   82 (354)
                      ...-+|.+|++++|++.+++.+......+...+++|+||||||||++|+++++.+...... ...+++..... +..+..
T Consensus        15 ~~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~-~~~~~~   93 (350)
T 1g8p_A           15 AKTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEM-IPDWAT   93 (350)
T ss_dssp             ---CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGG-SCTTCC
T ss_pred             CCCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccccc-ccchhh
Confidence            3445678999999999988776655544444569999999999999999999966321000 00011111000 000000


Q ss_pred             ccccccc-ccCceeeeCCCCCCCcchh-----HHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543           83 DLELTTL-SSANHVELSPSDAGFQDRY-----VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (354)
Q Consensus        83 ~~~~~~~-~~~~~i~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~  156 (354)
                      +..+... .....+....   +.....     .+...+..-...............++||||++.++.+.++.|++.+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~---~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~  170 (350)
T 1g8p_A           94 VLSTNVIRKPTPVVDLPL---GVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQS  170 (350)
T ss_dssp             CSCCCEEEECCCEEEECT---TCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred             hhccccccCCCcccccCC---CcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhc
Confidence            0000000 0000111111   110000     011111110000000000011357999999999999999999999987


Q ss_pred             c-------------cCceeEEEEecCCC-cccHHHhhhcce-eeecCCC-HHHHHHHHHHH-------------------
Q 018543          157 Y-------------SASCRLILCCNSSS-KVTEAIRSRCLN-IRINSPT-EEQIVKVLEFI-------------------  201 (354)
Q Consensus       157 ~-------------~~~~~~Il~~~~~~-~l~~~l~sR~~~-i~~~~~~-~~~~~~~L~~~-------------------  201 (354)
                      .             +..+.+|.++|... .+.+++.+||.. +.+++|+ .++...++.++                   
T Consensus       171 ~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~  250 (350)
T 1g8p_A          171 GENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDM  250 (350)
T ss_dssp             SEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchH
Confidence            3             23566777777644 799999999976 9999995 55554666542                   


Q ss_pred             ----------HHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHh
Q 018543          202 ----------AKKEGLQLPSGFATRLAEKSNR----SLRRAILSFETCRV  237 (354)
Q Consensus       202 ----------~~~~~~~i~~~~l~~i~~~s~g----d~R~ai~~L~~~~~  237 (354)
                                ....++.+++++++.|++.+.+    ++|.++++++.+..
T Consensus       251 ~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~  300 (350)
T 1g8p_A          251 DIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARA  300 (350)
T ss_dssp             HHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence                      2234568999999999998776    89999999986543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.78  E-value=2.5e-18  Score=158.74  Aligned_cols=216  Identities=16%  Similarity=0.229  Sum_probs=139.8

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhc----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCC---CCcccccccccccc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP---GAEKVKVENKTWKI   75 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~---~~~~~~~~~~~~~~   75 (354)
                      |..+|+|   ++++|++...+.+..++..    +...+++|+||+|+||||+++.+++.+...   ....+.+++.... 
T Consensus        13 l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~-   88 (386)
T 2qby_A           13 LLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID-   88 (386)
T ss_dssp             GSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-
T ss_pred             CCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-
Confidence            4566777   7899999999999988874    333459999999999999999999876432   2222223221110 


Q ss_pred             cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC----HHHHHHHH
Q 018543           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLR  151 (354)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----~~~~~~Ll  151 (354)
                         ....  -+..+.  ..+.......+.......+.+...+..        .+.+.+|+|||++.+.    .+....|+
T Consensus        89 ---~~~~--~~~~i~--~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlilDE~~~l~~~~~~~~l~~l~  153 (386)
T 2qby_A           89 ---TPYR--VLADLL--ESLDVKVPFTGLSIAELYRRLVKAVRD--------YGSQVVIVLDEIDAFVKKYNDDILYKLS  153 (386)
T ss_dssp             ---SHHH--HHHHHT--TTTSCCCCSSSCCHHHHHHHHHHHHHT--------CCSCEEEEEETHHHHHHSSCSTHHHHHH
T ss_pred             ---CHHH--HHHHHH--HHhCCCCCCCCCCHHHHHHHHHHHHhc--------cCCeEEEEEcChhhhhccCcCHHHHHHh
Confidence               0000  000000  000110001111111112222222221        1346899999998875    44566667


Q ss_pred             HHHhh-ccCceeEEEEecCCC---cccHHHhhhc--ceeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcC-
Q 018543          152 RTMEK-YSASCRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKSN-  222 (354)
Q Consensus       152 ~~le~-~~~~~~~Il~~~~~~---~l~~~l~sR~--~~i~~~~~~~~~~~~~L~~~~~~~--~~~i~~~~l~~i~~~s~-  222 (354)
                      +.++. ...+..+|+++++.+   .+.+.+.+|+  ..+.|+|++.+++..++.+.+...  ...+++++++.+++.+. 
T Consensus       154 ~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (386)
T 2qby_A          154 RINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAR  233 (386)
T ss_dssp             HHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHH
T ss_pred             hchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence            76654 234677888888773   6778899998  689999999999999999987653  35788999999999988 


Q ss_pred             --CCHHHHHHHHHHHHh
Q 018543          223 --RSLRRAILSFETCRV  237 (354)
Q Consensus       223 --gd~R~ai~~L~~~~~  237 (354)
                        ||+|.++++++.++.
T Consensus       234 ~~G~~r~~~~ll~~a~~  250 (386)
T 2qby_A          234 EHGDARRALDLLRVSGE  250 (386)
T ss_dssp             TTCCHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHH
Confidence              999999999987654

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.77  E-value=1.7e-17  Score=145.44  Aligned_cols=209  Identities=14%  Similarity=0.125  Sum_probs=125.7

Q ss_pred             CCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccc
Q 018543           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      +|++++|+....+.+...+..  ....+++|+||||||||++|+++++.........+.+++..+.              
T Consensus         4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~--------------   69 (265)
T 2bjv_A            4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN--------------   69 (265)
T ss_dssp             ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC--------------
T ss_pred             ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC--------------
Confidence            789999998877766655542  2234599999999999999999998543222222222222110              


Q ss_pred             cccCceee--eCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc---------
Q 018543           89 LSSANHVE--LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------  157 (354)
Q Consensus        89 ~~~~~~i~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~---------  157 (354)
                        . ..++  +.....+..... .......+.         .....+++|||++.++.+.|+.|++.+++.         
T Consensus        70 --~-~~~~~~l~g~~~~~~~g~-~~~~~~~l~---------~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~  136 (265)
T 2bjv_A           70 --E-NLLDSELFGHEAGAFTGA-QKRHPGRFE---------RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQ  136 (265)
T ss_dssp             --H-HHHHHHHHCCC----------CCCCHHH---------HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--
T ss_pred             --h-hHHHHHhcCCcccccccc-cccccchhh---------hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcc
Confidence              0 0000  000000000000 000000000         012369999999999999999999999863         


Q ss_pred             --cCceeEEEEecCCC-------cccHHHhhhcc--eeeecCCCH--HHHHHHHHH----HHHHcCC----CCCHHHHHH
Q 018543          158 --SASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEF----IAKKEGL----QLPSGFATR  216 (354)
Q Consensus       158 --~~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~~L~~----~~~~~~~----~i~~~~l~~  216 (354)
                        +.++.+|+++|...       .+.+.+.+|+.  .+.++|+..  +++..++.+    .+.+.+.    .+++++++.
T Consensus       137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~  216 (265)
T 2bjv_A          137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET  216 (265)
T ss_dssp             CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH
T ss_pred             cccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH
Confidence              34678888888752       46789999985  478888875  566655444    3444554    689999999


Q ss_pred             HHHHc-CCCHHHHHHHHHHHHhc--CCCCCCCC
Q 018543          217 LAEKS-NRSLRRAILSFETCRVQ--QYPFKDNQ  246 (354)
Q Consensus       217 i~~~s-~gd~R~ai~~L~~~~~~--~~~~~~~~  246 (354)
                      +.... .||+|...+.++.++..  +..++.++
T Consensus       217 L~~~~~~gn~reL~~~l~~~~~~~~~~~i~~~~  249 (265)
T 2bjv_A          217 LLNYRWPGNIRELKNVVERSVYRHGTSDYPLDD  249 (265)
T ss_dssp             HHHSCCTTHHHHHHHHHHHHHHHHCCSSSCBCC
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHhCCCCcCcHHH
Confidence            98875 89999999999977643  33454443

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.76  E-value=8.5e-18  Score=150.10  Aligned_cols=181  Identities=22%  Similarity=0.265  Sum_probs=124.0

Q ss_pred             cccCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543            5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      .++.+.+|++++|++.+++.|+.++..           + ..+ +++|+||||||||++|+++++++.   ...+.+++.
T Consensus         7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~   83 (301)
T 3cf0_A            7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGP   83 (301)
T ss_dssp             EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHH
T ss_pred             ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhH
Confidence            456778999999999999999987753           2 223 499999999999999999999762   111222221


Q ss_pred             cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH------
Q 018543           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------  145 (354)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~------  145 (354)
                      .+.                +    .+.    +.. ...++.++......         .+.++||||+|.+...      
T Consensus        84 ~l~----------------~----~~~----g~~-~~~~~~~f~~a~~~---------~p~il~iDEid~l~~~~~~~~~  129 (301)
T 3cf0_A           84 ELL----------------T----MWF----GES-EANVREIFDKARQA---------APCVLFFDELDSIAKARGGNIG  129 (301)
T ss_dssp             HHH----------------H----HHH----TTC-TTHHHHHHHHHHHT---------CSEEEEECSTTHHHHHHTTTTC
T ss_pred             HHH----------------h----hhc----Cch-HHHHHHHHHHHHhc---------CCeEEEEEChHHHhhccCCCcC
Confidence            110                0    000    000 12345555544332         3479999999987543      


Q ss_pred             --------HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543          146 --------AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (354)
Q Consensus       146 --------~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~  212 (354)
                              .++.|+..|+..  ..++.+|++||.++.+.+++.+  |+. .++|++|+.++...+++.++.+.++. ++.
T Consensus       130 ~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~  208 (301)
T 3cf0_A          130 DGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDV  208 (301)
T ss_dssp             CSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSC
T ss_pred             CcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccc
Confidence                    367788888743  3467888899999999999988  874 79999999999999999888766543 122


Q ss_pred             HHHHHHHHcCC
Q 018543          213 FATRLAEKSNR  223 (354)
Q Consensus       213 ~l~~i~~~s~g  223 (354)
                      .++.++..+.|
T Consensus       209 ~~~~la~~~~g  219 (301)
T 3cf0_A          209 DLEFLAKMTNG  219 (301)
T ss_dssp             CHHHHHHTCSS
T ss_pred             hHHHHHHHcCC
Confidence            34556665544

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.76  E-value=2e-17  Score=155.11  Aligned_cols=195  Identities=17%  Similarity=0.239  Sum_probs=132.1

Q ss_pred             cccc-cCCCCCCCcccCHHHHHHHHHHHhc-----------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccc
Q 018543            3 WVDK-YRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (354)
Q Consensus         3 w~ek-yrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~   69 (354)
                      |.+. ..+.+|+|++|++++++.++..+..           .+.| .++|+||||||||+++++++++...+   .+.++
T Consensus         5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~---f~~is   81 (476)
T 2ce7_A            5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP---FFHIS   81 (476)
T ss_dssp             CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC---EEEEE
T ss_pred             eccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---eeeCC
Confidence            4555 4556899999999998888876642           2334 39999999999999999999976221   11122


Q ss_pred             cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----
Q 018543           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (354)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----  144 (354)
                      +..+.                     +.    ........++.++......         .+.||||||+|.+..     
T Consensus        82 ~~~~~---------------------~~----~~g~~~~~~r~lf~~A~~~---------~p~ILfIDEid~l~~~r~~~  127 (476)
T 2ce7_A           82 GSDFV---------------------EL----FVGVGAARVRDLFAQAKAH---------APCIVFIDEIDAVGRHRGAG  127 (476)
T ss_dssp             GGGTT---------------------TC----CTTHHHHHHHHHHHHHHHT---------CSEEEEEETGGGTCCC----
T ss_pred             HHHHH---------------------HH----HhcccHHHHHHHHHHHHhc---------CCCEEEEechhhhhhhcccc
Confidence            11111                     00    0111122455555544332         348999999998742     


Q ss_pred             ---------HHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCC
Q 018543          145 ---------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (354)
Q Consensus       145 ---------~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~  210 (354)
                               ..++.|+..|+..  ..++.+|.+||.++.+.+++.+  |+. .+.+++|+.++...+++.++.+..  ++
T Consensus       128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~  205 (476)
T 2ce7_A          128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LA  205 (476)
T ss_dssp             -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BC
T ss_pred             cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--Cc
Confidence                     2456777777642  3467788889998888888876  765 799999999999999988776543  33


Q ss_pred             HH-HHHHHHHHcCCCH-HHHHHHHHHHH
Q 018543          211 SG-FATRLAEKSNRSL-RRAILSFETCR  236 (354)
Q Consensus       211 ~~-~l~~i~~~s~gd~-R~ai~~L~~~~  236 (354)
                      ++ .+..++..+.|.. |...++++.++
T Consensus       206 ~~v~l~~la~~t~G~sgadL~~lv~~Aa  233 (476)
T 2ce7_A          206 EDVNLEIIAKRTPGFVGADLENLVNEAA  233 (476)
T ss_dssp             TTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             chhhHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            33 3778999999876 66667766544

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.76  E-value=1.3e-17  Score=167.08  Aligned_cols=185  Identities=17%  Similarity=0.322  Sum_probs=133.4

Q ss_pred             CCcccCHHHHHHHHHHHhcC--------CC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543           13 DQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      ++++|++.+++.+...+...        ++ ++++|+||||||||++|+++++.+...+...+.+++..+.         
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~---------  561 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM---------  561 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC---------
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc---------
Confidence            46899999998888777632        11 2599999999999999999999886665555555554333         


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhh-------
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK-------  156 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~-------  156 (354)
                             ......      +       ..+...+..         ..+.||+|||++.++++.++.|++.|++       
T Consensus       562 -------~~~~~~------~-------~~l~~~~~~---------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~  612 (758)
T 3pxi_A          562 -------EKHSTS------G-------GQLTEKVRR---------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSK  612 (758)
T ss_dssp             -------SSCCCC----------------CHHHHHH---------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC---
T ss_pred             -------cccccc------c-------chhhHHHHh---------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCC
Confidence                   000000      0       011111222         1347999999999999999999999987       


Q ss_pred             ----ccCceeEEEEecCCCc------------ccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHc---------CCCCC
Q 018543          157 ----YSASCRLILCCNSSSK------------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE---------GLQLP  210 (354)
Q Consensus       157 ----~~~~~~~Il~~~~~~~------------l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~---------~~~i~  210 (354)
                          ...++.+|++||....            +.+++.+|| .++.|+|++.+++..++...+.+.         .+.++
T Consensus       613 g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~  692 (758)
T 3pxi_A          613 GRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELT  692 (758)
T ss_dssp             --CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred             CCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence                2356789999986543            789999999 789999999999999998876542         34688


Q ss_pred             HHHHHHHHHH---cCCCHHHHHHHHHHH
Q 018543          211 SGFATRLAEK---SNRSLRRAILSFETC  235 (354)
Q Consensus       211 ~~~l~~i~~~---s~gd~R~ai~~L~~~  235 (354)
                      +++++.|++.   ..|++|...+.++..
T Consensus       693 ~~a~~~l~~~~~~~~~~~R~L~~~i~~~  720 (758)
T 3pxi_A          693 DAAKAKVAEEGVDLEYGARPLRRAIQKH  720 (758)
T ss_dssp             HHHHHHHHGGGCCTTTTTTTHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence            9999999885   457788777777644

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.76  E-value=3.4e-18  Score=171.43  Aligned_cols=209  Identities=14%  Similarity=0.203  Sum_probs=142.8

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      .|+++++|.+|++++|+++.++.+...+......+++|+||||||||++++.+++.+.+........+...+.       
T Consensus       175 ~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-------  247 (758)
T 1r6b_X          175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-------  247 (758)
T ss_dssp             BHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-------
T ss_pred             hHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-------
Confidence            5889999999999999999999999999877777899999999999999999999875433211111111111       


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC---------CHHHHHHHHH
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SREAQHSLRR  152 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l---------~~~~~~~Ll~  152 (354)
                        .++.     ..  .............++.+++.+..         .++.++||||+|.+         ..+.++.|..
T Consensus       248 --~~~~-----~l--~~~~~~~g~~e~~l~~~~~~~~~---------~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~  309 (758)
T 1r6b_X          248 --LDIG-----SL--LAGTKYRGDFEKRFKALLKQLEQ---------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKP  309 (758)
T ss_dssp             --CCCC----------CCCCCSSCHHHHHHHHHHHHSS---------SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSS
T ss_pred             --EcHH-----HH--hccccccchHHHHHHHHHHHHHh---------cCCeEEEEechHHHhhcCCCCcchHHHHHHHHH
Confidence              0000     00  00011111111234444444322         23489999999988         2334555555


Q ss_pred             HHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC
Q 018543          153 TMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR  223 (354)
Q Consensus       153 ~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~s~g  223 (354)
                      .++.  ....+|.+++.++     .+.+++.+||..+.|++|+.++...+|..++..    .++.++++++..++..+.|
T Consensus       310 ~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~  387 (758)
T 1r6b_X          310 LLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK  387 (758)
T ss_dssp             CSSS--CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             HHhC--CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Confidence            5553  4567777777542     466889999999999999999999999887765    6888999999999987654


Q ss_pred             ------CHHHHHHHHHHHHh
Q 018543          224 ------SLRRAILSFETCRV  237 (354)
Q Consensus       224 ------d~R~ai~~L~~~~~  237 (354)
                            ...+++.+++.++.
T Consensus       388 ~i~~~~lp~~~i~lld~a~~  407 (758)
T 1r6b_X          388 YINDRHLPDKAIDVIDEAGA  407 (758)
T ss_dssp             HCTTSCTTHHHHHHHHHHHH
T ss_pred             hcccccCchHHHHHHHHHHH
Confidence                  24477888776543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.75  E-value=1.6e-17  Score=159.65  Aligned_cols=195  Identities=16%  Similarity=0.244  Sum_probs=122.7

Q ss_pred             CCcccCHHHHHHHHHHHh------cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccc
Q 018543           13 DQVIVHQDIAQNLKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~------~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
                      ++++|++++++.+...+.      ....++++|+|||||||||+++++++.+ ......+...+.  .          +.
T Consensus        81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~~--~----------~~  147 (543)
T 3m6a_A           81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGGV--R----------DE  147 (543)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC----------------
T ss_pred             HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEeccc--c----------hh
Confidence            357899999887765543      1234469999999999999999999976 222111111110  0          00


Q ss_pred             cccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH----HHHHHHHHHhhcc----
Q 018543           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----AQHSLRRTMEKYS----  158 (354)
Q Consensus        87 ~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~----~~~~Ll~~le~~~----  158 (354)
                      .     ..........+.    ....+...+....       ....+++|||+|.+..+    .++.|++.|+...    
T Consensus       148 ~-----~~~g~~~~~ig~----~~~~~~~~~~~a~-------~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~  211 (543)
T 3m6a_A          148 S-----EIRGHRRTYVGA----MPGRIIQGMKKAG-------KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSF  211 (543)
T ss_dssp             -------------------------CHHHHHHTTC-------SSSEEEEEEESSSCC---------CCGGGTCTTTTTBC
T ss_pred             h-----hhhhHHHHHhcc----CchHHHHHHHHhh-------ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhccee
Confidence            0     000000000000    0111111122211       12359999999999877    4588888886432    


Q ss_pred             -----------CceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHH
Q 018543          159 -----------ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-----KE-----GLQLPSGFATRL  217 (354)
Q Consensus       159 -----------~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~-----~~-----~~~i~~~~l~~i  217 (354)
                                 .++.+|+++|....+.+++++||.+|.|++|+.++...++.+++.     +.     ++.++++++..+
T Consensus       212 ~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l  291 (543)
T 3m6a_A          212 SDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDI  291 (543)
T ss_dssp             CCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHH
T ss_pred             ecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHH
Confidence                       457889999999999999999999999999999999999987652     22     456789999998


Q ss_pred             HHHcC--CCHHHHHHHHHHHH
Q 018543          218 AEKSN--RSLRRAILSFETCR  236 (354)
Q Consensus       218 ~~~s~--gd~R~ai~~L~~~~  236 (354)
                      ++...  |++|..-+.++.++
T Consensus       292 ~~~~~~~~~vR~L~~~i~~~~  312 (543)
T 3m6a_A          292 IRYYTREAGVRSLERQLAAIC  312 (543)
T ss_dssp             HHHHCCCSSSHHHHHHHHHHH
T ss_pred             HHhCChhhchhHHHHHHHHHH
Confidence            88544  68888777776544

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.75  E-value=2.7e-17  Score=164.94  Aligned_cols=197  Identities=19%  Similarity=0.231  Sum_probs=134.4

Q ss_pred             CCcccCHHHHHHHHHHHhc---C-----CC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543           13 DQVIVHQDIAQNLKKLVTE---Q-----DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~---~-----~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      .+++|++++++.+...+..   |     ++ .+++|+||||||||++|+++++.+   +...+.+++..+.         
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~---------  525 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYM---------  525 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCS---------
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhc---------
Confidence            3588999999888777653   1     22 259999999999999999999977   1223344433322         


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----  158 (354)
                       +.     ...-.+.....+.........+...+..         ..+.||+|||++.++++.++.|++.|++..     
T Consensus       526 -~~-----~~~~~l~g~~~g~~g~~~~~~l~~~~~~---------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~  590 (758)
T 1r6b_X          526 -ER-----HTVSRLIGAPPGYVGFDQGGLLTDAVIK---------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNN  590 (758)
T ss_dssp             -SS-----SCCSSSCCCCSCSHHHHHTTHHHHHHHH---------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETT
T ss_pred             -ch-----hhHhhhcCCCCCCcCccccchHHHHHHh---------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCC
Confidence             00     0000111111121110011112222222         234899999999999999999999998742     


Q ss_pred             ------CceeEEEEecCCC-------------------------cccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHc-
Q 018543          159 ------ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE-  205 (354)
Q Consensus       159 ------~~~~~Il~~~~~~-------------------------~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~-  205 (354)
                            .++.+|++||...                         .+.+++.+|| .++.|+|++.+++..++...+.+. 
T Consensus       591 g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~  670 (758)
T 1r6b_X          591 GRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQ  670 (758)
T ss_dssp             TEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHH
Confidence                  4567888888643                         5778999999 689999999999999998877532 


Q ss_pred             --------CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Q 018543          206 --------GLQLPSGFATRLAEKS---NRSLRRAILSFETCR  236 (354)
Q Consensus       206 --------~~~i~~~~l~~i~~~s---~gd~R~ai~~L~~~~  236 (354)
                              .+.+++++++.+++.+   ++++|.+.+.++...
T Consensus       671 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~  712 (758)
T 1r6b_X          671 VQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNL  712 (758)
T ss_dssp             HHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHH
T ss_pred             HHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHH
Confidence                    3568899999999876   556888887777554

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.75  E-value=1e-18  Score=144.51  Aligned_cols=157  Identities=18%  Similarity=0.269  Sum_probs=108.0

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      .|.++|+|.+|++++|++..++.+..++..+..++++|+||+|+|||++++.+++.+........ ..+.          
T Consensus        11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~-~~~~----------   79 (187)
T 2p65_A           11 DLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDS-LKGR----------   79 (187)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTT-TTTC----------
T ss_pred             HHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcch-hcCC----------
Confidence            58899999999999999999999999988877777999999999999999999998754221100 0000          


Q ss_pred             ccccccccccCceeeeCCC------CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---------HHH
Q 018543           82 IDLELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REA  146 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~  146 (354)
                                 ..+.+...      .........++.++..+...        .++.+++|||+|.+.         .+.
T Consensus        80 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~vl~iDe~~~l~~~~~~~~~~~~~  140 (187)
T 2p65_A           80 -----------KLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDA--------EGQVVMFIDEIHTVVGAGAVAEGALDA  140 (187)
T ss_dssp             -----------EEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHT--------TTSEEEEETTGGGGSSSSSSCTTSCCT
T ss_pred             -----------eEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhc--------CCceEEEEeCHHHhcccccccccchHH
Confidence                       00111100      00000011234444443332        234799999999886         455


Q ss_pred             HHHHHHHHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCC
Q 018543          147 QHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPT  190 (354)
Q Consensus       147 ~~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~  190 (354)
                      ++.|...++.  ....+|++++.+.     .+.+++++||..+.+++|+
T Consensus       141 ~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~  187 (187)
T 2p65_A          141 GNILKPMLAR--GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS  187 (187)
T ss_dssp             HHHHHHHHHT--TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred             HHHHHHHHhc--CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence            6677777765  4577888888764     5889999999999998885

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.74  E-value=1.6e-17  Score=153.16  Aligned_cols=193  Identities=18%  Similarity=0.205  Sum_probs=123.5

Q ss_pred             CcccCHHHHHHHHHHHh----c--------------------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCC
Q 018543           14 QVIVHQDIAQNLKKLVT----E--------------------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA   63 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~----~--------------------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~   63 (354)
                      .++||+++++.+..++.    .                          ...++++|+||||||||++|+++++.+..+  
T Consensus        22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~--   99 (376)
T 1um8_A           22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIP--   99 (376)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC--
T ss_pred             HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCC--
Confidence            47999999998887762    1                          123359999999999999999999976211  


Q ss_pred             cccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC
Q 018543           64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS  143 (354)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~  143 (354)
                       .+.+++.                .....   .+    .+......+...+...   ... . ....+.+++|||+|.+.
T Consensus       100 -~~~~~~~----------------~~~~~---~~----~g~~~~~~~~~~~~~~---~~~-~-~~~~~~vl~iDEi~~l~  150 (376)
T 1um8_A          100 -IAISDAT----------------SLTEA---GY----VGEDVENILTRLLQAS---DWN-V-QKAQKGIVFIDEIDKIS  150 (376)
T ss_dssp             -EEEEEGG----------------GCC---------------CTHHHHHHHHHT---TTC-H-HHHTTSEEEEETGGGC-
T ss_pred             -EEEecch----------------hhhhc---Cc----CCccHHHHHHHHHhhc---cch-h-hhcCCeEEEEcCHHHHh
Confidence             1111111                11000   00    0111111223332211   100 0 01234799999999998


Q ss_pred             HH--------------HHHHHHHHHhhcc---------------------CceeEEEEecC-------------------
Q 018543          144 RE--------------AQHSLRRTMEKYS---------------------ASCRLILCCNS-------------------  169 (354)
Q Consensus       144 ~~--------------~~~~Ll~~le~~~---------------------~~~~~Il~~~~-------------------  169 (354)
                      ..              .++.|++.|++..                     .+..+|+++|.                   
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~  230 (376)
T 1um8_A          151 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT  230 (376)
T ss_dssp             -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred             hhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCC
Confidence            87              8999999998541                     34566666651                   


Q ss_pred             ----------------------CCcccHHHhhhc-ceeeecCCCHHHHHHHHHH----HHH-------H--cCCCCCHHH
Q 018543          170 ----------------------SSKVTEAIRSRC-LNIRINSPTEEQIVKVLEF----IAK-------K--EGLQLPSGF  213 (354)
Q Consensus       170 ----------------------~~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~----~~~-------~--~~~~i~~~~  213 (354)
                                            ...+.+++.+|| .++.|+|++.+++..++..    ++.       .  .++.+++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  310 (376)
T 1um8_A          231 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEA  310 (376)
T ss_dssp             CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHH
T ss_pred             chhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHH
Confidence                                  013678999999 7899999999999998862    211       1  245689999


Q ss_pred             HHHHHHHcC---CCHHHHHHHHHHHHh
Q 018543          214 ATRLAEKSN---RSLRRAILSFETCRV  237 (354)
Q Consensus       214 l~~i~~~s~---gd~R~ai~~L~~~~~  237 (354)
                      ++.|++.+.   |++|.+.+.++.++.
T Consensus       311 ~~~l~~~~~~~~~~~R~L~~~le~~~~  337 (376)
T 1um8_A          311 IKEIAQLALERKTGARGLRAIIEDFCL  337 (376)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred             HHHHHHHhcccccCcHHHHHHHHHHHH
Confidence            999999865   999999999987664

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.72  E-value=2.2e-17  Score=167.25  Aligned_cols=200  Identities=18%  Similarity=0.285  Sum_probs=136.2

Q ss_pred             CCcccCHHHHHHHHHHHhcC--------CC-CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543           13 DQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      ++++|++.+++.+...+...        ++ .+++|+||||||||++|+++++.+.+.....+.+++..+.         
T Consensus       558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~---------  628 (854)
T 1qvr_A          558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM---------  628 (854)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC---------
T ss_pred             cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc---------
Confidence            46899999998888877542        11 2599999999999999999999887655555555544332         


Q ss_pred             ccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----
Q 018543           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (354)
Q Consensus        84 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----  158 (354)
                       +....+  ..+...+...+...   ...+...+.. .        .+.+|||||++.++++.++.|+++|++..     
T Consensus       629 -~~~~~s--~l~g~~~~~~G~~~---~g~l~~~~~~-~--------~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~  693 (854)
T 1qvr_A          629 -EKHAVS--RLIGAPPGYVGYEE---GGQLTEAVRR-R--------PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSH  693 (854)
T ss_dssp             -SSGGGG--GC-----------------CHHHHHHH-C--------SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSS
T ss_pred             -chhHHH--HHcCCCCCCcCccc---cchHHHHHHh-C--------CCeEEEEecccccCHHHHHHHHHHhccCceECCC
Confidence             000000  00110111111111   1122222222 1        24799999999999999999999998753     


Q ss_pred             ------CceeEEEEecCC--------------------------CcccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHc
Q 018543          159 ------ASCRLILCCNSS--------------------------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE  205 (354)
Q Consensus       159 ------~~~~~Il~~~~~--------------------------~~l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~  205 (354)
                            .++.+|++||..                          ..+.+++.+|| .++.|.|++.+++..++...+.+.
T Consensus       694 g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~  773 (854)
T 1qvr_A          694 GRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL  773 (854)
T ss_dssp             SCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence                  356688888862                          24668899999 678999999999999988766521


Q ss_pred             ---------CCCCCHHHHHHHHHHcC---CCHHHHHHHHHHHH
Q 018543          206 ---------GLQLPSGFATRLAEKSN---RSLRRAILSFETCR  236 (354)
Q Consensus       206 ---------~~~i~~~~l~~i~~~s~---gd~R~ai~~L~~~~  236 (354)
                               .+.+++++++.|++.+-   |++|.+.+.++.+.
T Consensus       774 ~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~  816 (854)
T 1qvr_A          774 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQREL  816 (854)
T ss_dssp             HHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHT
T ss_pred             HHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHH
Confidence                     24689999999999764   99999998888654

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.71  E-value=7.2e-16  Score=137.57  Aligned_cols=202  Identities=17%  Similarity=0.151  Sum_probs=126.8

Q ss_pred             CCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccc
Q 018543           13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (354)
                      ++++|+....+.+...+..  ....+++|+||||||||++|+++++.........+.++|..+.       .  +  ...
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~-------~--~--l~~   70 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN-------E--S--LLE   70 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC-------H--H--HHH
T ss_pred             CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC-------h--H--HHH
Confidence            4688987777777666654  3334599999999999999999998643322222333322111       0  0  000


Q ss_pred             cCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc-----------C
Q 018543           91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------A  159 (354)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-----------~  159 (354)
                      +    ++.....+..... .......+..         ....++||||++.++.+.|..|++.+++..           .
T Consensus        71 ~----~lfg~~~g~~tg~-~~~~~g~~~~---------a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~  136 (304)
T 1ojl_A           71 S----ELFGHEKGAFTGA-DKRREGRFVE---------ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISV  136 (304)
T ss_dssp             H----HHTCCCSSCCC----CCCCCHHHH---------HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred             H----HhcCccccccCch-hhhhcCHHHh---------cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccC
Confidence            0    0000000000000 0000000000         123689999999999999999999998642           4


Q ss_pred             ceeEEEEecCCC-------cccHHHhhhcc--eeeecCCC--HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc
Q 018543          160 SCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS  221 (354)
Q Consensus       160 ~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~~L~~~~~----~~~---~~i~~~~l~~i~~~s  221 (354)
                      ++++|++||...       .+.+.+.+|+.  .+++||+.  .+++..++.+.+.    +.+   ..+++++++.+...+
T Consensus       137 ~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~  216 (304)
T 1ojl_A          137 DVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD  216 (304)
T ss_dssp             CCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC
T ss_pred             CeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC
Confidence            578888888762       46678999974  46688877  5666666655443    333   568999999999987


Q ss_pred             -CCCHHHHHHHHHHHHhcC
Q 018543          222 -NRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       222 -~gd~R~ai~~L~~~~~~~  239 (354)
                       .||+|.+.+.++.++...
T Consensus       217 wpGnvReL~~~l~~~~~~~  235 (304)
T 1ojl_A          217 WPGNIRELENAIERAVVLL  235 (304)
T ss_dssp             CSSHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHhC
Confidence             999999999999877643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.71  E-value=2.3e-18  Score=151.35  Aligned_cols=196  Identities=15%  Similarity=0.233  Sum_probs=125.0

Q ss_pred             cccCCCCCCCcccCHHHHHHHHHHHhc-----------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccc
Q 018543            5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~   72 (354)
                      .++.+.+|++++|++.+++.+...+..           ...+ +++|+||||||||++|+++++++..+-   +.+++..
T Consensus         3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~v~~~~   79 (268)
T 2r62_A            3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF---FSMGGSS   79 (268)
T ss_dssp             CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCC---CCCCSCT
T ss_pred             ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEechHH
Confidence            467888999999998888888876651           2333 399999999999999999999863321   1121111


Q ss_pred             ccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-------
Q 018543           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-------  145 (354)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-------  145 (354)
                      +.                ..    +...  +.   ..++..++.....         .+.+|+|||+|.+...       
T Consensus        80 ~~----------------~~----~~~~--~~---~~~~~~~~~a~~~---------~~~vl~iDEid~l~~~~~~~~~~  125 (268)
T 2r62_A           80 FI----------------EM----FVGL--GA---SRVRDLFETAKKQ---------APSIIFIDEIDAIGKSRAAGGVV  125 (268)
T ss_dssp             TT----------------TS----CSSS--CS---SSSSTTHHHHHHS---------CSCEEEESCGGGTTC--------
T ss_pred             HH----------------Hh----hcch--HH---HHHHHHHHHHHhc---------CCeEEEEeChhhhcccccccccC
Confidence            10                00    0000  00   0112223332221         3479999999988643       


Q ss_pred             --------HHHHHHHHHhhcc---CceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543          146 --------AQHSLRRTMEKYS---ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (354)
Q Consensus       146 --------~~~~Ll~~le~~~---~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~  211 (354)
                              .++.|+..++...   ..+.+|.++|.++.+.+++.+  |+ ..+.|++|+.++...+++..+....+. ++
T Consensus       126 ~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~  204 (268)
T 2r62_A          126 SGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-ND  204 (268)
T ss_dssp             --CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SS
T ss_pred             CCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-Cc
Confidence                    2455666666542   236677788888888889988  55 469999999999999998877543322 22


Q ss_pred             HHHHHHHHHcCC-CHHHHHHHHHHHHhc
Q 018543          212 GFATRLAEKSNR-SLRRAILSFETCRVQ  238 (354)
Q Consensus       212 ~~l~~i~~~s~g-d~R~ai~~L~~~~~~  238 (354)
                      ..++.++..+.| ..|...++++.++..
T Consensus       205 ~~~~~la~~~~g~~g~dl~~l~~~a~~~  232 (268)
T 2r62_A          205 VNLQEVAKLTAGLAGADLANIINEAALL  232 (268)
T ss_dssp             CCTTTTTSSSCSSCHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            235667777766 345666666655543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.71  E-value=1.1e-16  Score=140.92  Aligned_cols=181  Identities=17%  Similarity=0.271  Sum_probs=114.0

Q ss_pred             CCcccCHHHHHHHH-------HHHh---cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc
Q 018543           13 DQVIVHQDIAQNLK-------KLVT---EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (354)
Q Consensus        13 ~~~~g~~~~~~~l~-------~~l~---~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   82 (354)
                      ..++|+....+.+.       ..+.   ....++++|+||||||||++|+++++.+.++   .+.+++       +.   
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~---~~~i~~-------~~---   99 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP---FIKICS-------PD---   99 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS---EEEEEC-------GG---
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC---EEEEeC-------HH---
Confidence            45777755443333       2343   2222349999999999999999999975221   111110       00   


Q ss_pred             cccccccccCceeeeCCCCCCCcc---hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC----------CHHHHHH
Q 018543           83 DLELTTLSSANHVELSPSDAGFQD---RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL----------SREAQHS  149 (354)
Q Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l----------~~~~~~~  149 (354)
                                   .+    .+...   ...++..+.....         .++.+|||||+|.+          ....++.
T Consensus       100 -------------~~----~g~~~~~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~  153 (272)
T 1d2n_A          100 -------------KM----IGFSETAKCQAMKKIFDDAYK---------SQLSCVVVDDIERLLDYVPIGPRFSNLVLQA  153 (272)
T ss_dssp             -------------GC----TTCCHHHHHHHHHHHHHHHHT---------SSEEEEEECCHHHHTTCBTTTTBCCHHHHHH
T ss_pred             -------------Hh----cCCchHHHHHHHHHHHHHHHh---------cCCcEEEEEChhhhhccCCCChhHHHHHHHH
Confidence                         00    11111   0123344433221         34589999999887          4555666


Q ss_pred             HHHHHhh---ccCceeEEEEecCCCcccH-HHhhh-cceeeecCCCH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 018543          150 LRRTMEK---YSASCRLILCCNSSSKVTE-AIRSR-CLNIRINSPTE-EQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR  223 (354)
Q Consensus       150 Ll~~le~---~~~~~~~Il~~~~~~~l~~-~l~sR-~~~i~~~~~~~-~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~g  223 (354)
                      |...++.   ....+.+|.++|.++.+.+ .+++| +..+++++++. +++..++.+    . ..++++.+..+++.+.|
T Consensus       154 L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~-~~~~~~~~~~l~~~~~g  228 (272)
T 1d2n_A          154 LLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----L-GNFKDKERTTIAQQVKG  228 (272)
T ss_dssp             HHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----H-TCSCHHHHHHHHHHHTT
T ss_pred             HHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----c-CCCCHHHHHHHHHHhcC
Confidence            6666654   2234456666776665655 57888 46799998887 677666654    2 24689999999999988


Q ss_pred             -----CHHHHHHHHHHHHh
Q 018543          224 -----SLRRAILSFETCRV  237 (354)
Q Consensus       224 -----d~R~ai~~L~~~~~  237 (354)
                           |+|++++.++.+..
T Consensus       229 ~~~~g~ir~l~~~l~~a~~  247 (272)
T 1d2n_A          229 KKVWIGIKKLLMLIEMSLQ  247 (272)
T ss_dssp             SEEEECHHHHHHHHHHHTT
T ss_pred             CCccccHHHHHHHHHHHhh
Confidence                 99999999998853

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.70  E-value=1.1e-16  Score=151.19  Aligned_cols=193  Identities=17%  Similarity=0.233  Sum_probs=130.5

Q ss_pred             ccCCCCCCCcccCHHHHHHHHHHHhc-------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccc
Q 018543            6 KYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (354)
Q Consensus         6 kyrP~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~   72 (354)
                      .+++.+|++++|++..++.++.++..             ....++||+||||||||++|+++++++.   ...+.+++..
T Consensus       197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~vn~~~  273 (489)
T 3hu3_A          197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPE  273 (489)
T ss_dssp             HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS---SEEEEEEHHH
T ss_pred             ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC---CCEEEEEchH
Confidence            45678899999999999999887753             2233499999999999999999998751   1112222211


Q ss_pred             ccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---------
Q 018543           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------  143 (354)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------  143 (354)
                      +.                         +.........++..+.....         ..+.+|||||+|.+.         
T Consensus       274 l~-------------------------~~~~g~~~~~~~~~f~~A~~---------~~p~iLfLDEId~l~~~~~~~~~~  319 (489)
T 3hu3_A          274 IM-------------------------SKLAGESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHGE  319 (489)
T ss_dssp             HH-------------------------TSCTTHHHHHHHHHHHHHHH---------TCSEEEEEESHHHHCBCTTSCCCH
T ss_pred             hh-------------------------hhhcchhHHHHHHHHHHHHh---------cCCcEEEecchhhhccccccccch
Confidence            11                         00111111234444544333         234799999997664         


Q ss_pred             --HHHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 018543          144 --REAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR  216 (354)
Q Consensus       144 --~~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~  216 (354)
                        ...++.|++.|+..  ..++.+|.+||.++.+.+++++  |+. .+.|++|+.++...+|+.++....+. .+..+..
T Consensus       320 ~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~  398 (489)
T 3hu3_A          320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQ  398 (489)
T ss_dssp             HHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHH
T ss_pred             HHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHH
Confidence              35788899999854  3467788889999899999999  553 69999999999999999877654443 2234677


Q ss_pred             HHHHcCCCHHHHHH-HHHHHH
Q 018543          217 LAEKSNRSLRRAIL-SFETCR  236 (354)
Q Consensus       217 i~~~s~gd~R~ai~-~L~~~~  236 (354)
                      ++..+.|.....+. +++.++
T Consensus       399 la~~t~g~s~~dL~~L~~~A~  419 (489)
T 3hu3_A          399 VANETHGHVGADLAALCSEAA  419 (489)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHH
T ss_pred             HHHHccCCcHHHHHHHHHHHH
Confidence            88888885444443 344433

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.70  E-value=1.7e-16  Score=154.71  Aligned_cols=231  Identities=17%  Similarity=0.165  Sum_probs=139.6

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      ..+|||++|++++|++.+++.+...+..|.  +++|+||||+||||+++++++.+.....+.+.+.+.......+.+..+
T Consensus        32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~  109 (604)
T 3k1j_A           32 EIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV  109 (604)
T ss_dssp             GSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred             cccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence            468999999999999999999999999885  599999999999999999999654433233333222111000000000


Q ss_pred             cccc--------------------------ccccCceeee-CCCCCCC----cchhHHHHHHHHHHhcCCC--CCC----
Q 018543           84 LELT--------------------------TLSSANHVEL-SPSDAGF----QDRYVVQEVIKEMAKNRPI--DTK----  126 (354)
Q Consensus        84 ~~~~--------------------------~~~~~~~i~~-~~~~~~~----~~~~~i~~~~~~~~~~~~~--~~~----  126 (354)
                      ....                          .......+.. +....+.    .......+++..+......  ...    
T Consensus       110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~  189 (604)
T 3k1j_A          110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH  189 (604)
T ss_dssp             ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred             ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence            0000                          0000000000 0000000    0000122222111000000  000    


Q ss_pred             --------CCCCceEEEEeCCCcCCHHHHHHHHHHHhhc---------------------cCceeEEEEecCC--CcccH
Q 018543          127 --------GKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------------------SASCRLILCCNSS--SKVTE  175 (354)
Q Consensus       127 --------~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~---------------------~~~~~~Il~~~~~--~~l~~  175 (354)
                              ...+..++||||++.|++..|+.|++.|++.                     +.++++|+++|..  ..+.+
T Consensus       190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~  269 (604)
T 3k1j_A          190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP  269 (604)
T ss_dssp             GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred             ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence                    0124469999999999999999999999842                     2356788888876  57999


Q ss_pred             HHhhhcc----eeeecC---CCHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHc---CC-------CHHHHHHHHH
Q 018543          176 AIRSRCL----NIRINS---PTEEQIVKVLEFIAKKE-----GLQLPSGFATRLAEKS---NR-------SLRRAILSFE  233 (354)
Q Consensus       176 ~l~sR~~----~i~~~~---~~~~~~~~~L~~~~~~~-----~~~i~~~~l~~i~~~s---~g-------d~R~ai~~L~  233 (354)
                      ++++||.    .+.|++   -..+.+..++..++...     ...++++++..+++.+   .|       +.|.+.++++
T Consensus       270 ~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr  349 (604)
T 3k1j_A          270 ALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVR  349 (604)
T ss_dssp             HHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHH
T ss_pred             HHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHH
Confidence            9999994    456543   25556777766555432     2578999999999865   56       5999999988


Q ss_pred             HHH
Q 018543          234 TCR  236 (354)
Q Consensus       234 ~~~  236 (354)
                      .+.
T Consensus       350 ~A~  352 (604)
T 3k1j_A          350 AAG  352 (604)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.68  E-value=5.3e-16  Score=146.33  Aligned_cols=195  Identities=17%  Similarity=0.280  Sum_probs=126.2

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhc-----------CCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   70 (354)
                      |.+. .+.+|+|++|+++++..++..+..           .+.+. ++|+||||||||++++++++.+.   ...+.+++
T Consensus        22 ~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~---~~~i~i~g   97 (499)
T 2dhr_A           22 LTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASG   97 (499)
T ss_dssp             ECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred             eccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeh
Confidence            4455 778999999999998888776542           12333 99999999999999999999752   22233332


Q ss_pred             ccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH------
Q 018543           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------  144 (354)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------  144 (354)
                      ..+.                     +   ...+     .....+..+-+...     ...+.+++|||+|.+..      
T Consensus        98 ~~~~---------------------~---~~~g-----~~~~~v~~lfq~a~-----~~~p~il~IDEId~l~~~r~~~~  143 (499)
T 2dhr_A           98 SDFV---------------------E---MFVG-----VGAARVRDLFETAK-----RHAPCIVFIDEIDAVGRKRGSGV  143 (499)
T ss_dssp             GGGT---------------------S---SCTT-----HHHHHHHHHTTTSS-----SSSSCEEEEECGGGTCCCSSSST
T ss_pred             hHHH---------------------H---hhhh-----hHHHHHHHHHHHHH-----hcCCCEEEEehHHHHHHhhccCc
Confidence            2211                     0   0001     01111222211111     12357999999987631      


Q ss_pred             --------HHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCH
Q 018543          145 --------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (354)
Q Consensus       145 --------~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~  211 (354)
                              ...+.|+..|+..  .....++.++|.++.+.+++.+++   ..+.+++|+.++..++|+.++.  +..+++
T Consensus       144 ~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~  221 (499)
T 2dhr_A          144 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAE  221 (499)
T ss_dssp             TTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCC
T ss_pred             CCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCCh
Confidence                    2334555555433  233556667778878889999855   3799999999999999987653  455554


Q ss_pred             HH-HHHHHHHcCCCH-HHHHHHHHHHHh
Q 018543          212 GF-ATRLAEKSNRSL-RRAILSFETCRV  237 (354)
Q Consensus       212 ~~-l~~i~~~s~gd~-R~ai~~L~~~~~  237 (354)
                      ++ +..++..+.|+. |...++++.++.
T Consensus       222 dv~l~~lA~~t~G~~gadL~~lv~~Aa~  249 (499)
T 2dhr_A          222 DVDLALLAKRTPGFVGADLENLLNEAAL  249 (499)
T ss_dssp             SSTTHHHHTTSCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            44 788999999977 777777776554

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.65  E-value=3.1e-15  Score=130.18  Aligned_cols=194  Identities=17%  Similarity=0.268  Sum_probs=123.1

Q ss_pred             ccccCCCCCCCcccCHHHHHHHHHHHhc-----------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      ...+.+.+|++++|+++++..++.....           -..+ .++|+||||+||||+++++++.+.   .+.+.+++.
T Consensus         7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~   83 (254)
T 1ixz_A            7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASGS   83 (254)
T ss_dssp             -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH
T ss_pred             ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHH
Confidence            4567788999999999888777665431           1223 399999999999999999998652   222222222


Q ss_pred             cccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--------
Q 018543           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------  143 (354)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------  143 (354)
                      .+.                     ..   ..+ .....++.+++....         ..+.++++||+|.+.        
T Consensus        84 ~~~---------------------~~---~~~-~~~~~i~~~~~~~~~---------~~~~i~~~Deid~l~~~~~~~~~  129 (254)
T 1ixz_A           84 DFV---------------------EM---FVG-VGAARVRDLFETAKR---------HAPCIVFIDEIDAVGRKRGSGVG  129 (254)
T ss_dssp             HHH---------------------HS---CTT-HHHHHHHHHHHHHTT---------SSSEEEEEETHHHHHC-------
T ss_pred             HHH---------------------HH---Hhh-HHHHHHHHHHHHHHh---------cCCeEEEehhhhhhhcccCcccc
Confidence            111                     00   000 001123333333211         234799999997652        


Q ss_pred             ---H---HHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhh--c-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 018543          144 ---R---EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (354)
Q Consensus       144 ---~---~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~  212 (354)
                         .   ...+.++..|+...  ....++.++|+++.+.+++.+|  + ..+.+++|+.++..++++..+.  +..++++
T Consensus       130 ~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~  207 (254)
T 1ixz_A          130 GGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAED  207 (254)
T ss_dssp             --CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTT
T ss_pred             ccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcc
Confidence               1   12345555554332  2345666778888899999985  4 3699999999999999987653  4555544


Q ss_pred             H-HHHHHHHcCCCH-HHHHHHHHHHH
Q 018543          213 F-ATRLAEKSNRSL-RRAILSFETCR  236 (354)
Q Consensus       213 ~-l~~i~~~s~gd~-R~ai~~L~~~~  236 (354)
                      . +..++..+.|+. |...++++.++
T Consensus       208 ~~~~~la~~~~G~~~~dl~~~~~~a~  233 (254)
T 1ixz_A          208 VDLALLAKRTPGFVGADLENLLNEAA  233 (254)
T ss_dssp             CCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3 788999998865 66666666544

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.62  E-value=2.3e-14  Score=126.42  Aligned_cols=192  Identities=18%  Similarity=0.275  Sum_probs=120.9

Q ss_pred             ccCCCCCCCcccCHHHHHHHHHHHhc-----------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543            6 KYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (354)
Q Consensus         6 kyrP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~   73 (354)
                      ...+.+|++++|+++++..++.....           -..+ .++|+||||+||||+++++++.+.   .+.+.+++..+
T Consensus        33 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~  109 (278)
T 1iy2_A           33 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDF  109 (278)
T ss_dssp             CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHH
T ss_pred             CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHH
Confidence            33667899999999988777765532           1223 399999999999999999998652   22222222211


Q ss_pred             cccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC----------
Q 018543           74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----------  143 (354)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~----------  143 (354)
                      .                     ..   ..+ .....++.+++....         ..+.++++||+|.+.          
T Consensus       110 ~---------------------~~---~~~-~~~~~i~~~~~~~~~---------~~~~i~~iDeid~l~~~~~~~~~~~  155 (278)
T 1iy2_A          110 V---------------------EM---FVG-VGAARVRDLFETAKR---------HAPCIVFIDEIDAVGRKRGSGVGGG  155 (278)
T ss_dssp             H---------------------HS---TTT-HHHHHHHHHHHHHHT---------SCSEEEEEETHHHHHCC--------
T ss_pred             H---------------------HH---Hhh-HHHHHHHHHHHHHHh---------cCCcEEehhhhHhhhcccccccCCc
Confidence            1                     00   000 011123344433322         124799999997652          


Q ss_pred             -HHHHH---HHHHHHhhc--cCceeEEEEecCCCcccHHHhhh--c-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-
Q 018543          144 -REAQH---SLRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-  213 (354)
Q Consensus       144 -~~~~~---~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~-  213 (354)
                       .+...   .++..|...  .....++.++|+++.+.+++.++  + ..+.|++|+.++..++++..+.  +..+++++ 
T Consensus       156 ~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~  233 (278)
T 1iy2_A          156 NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVD  233 (278)
T ss_dssp             CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccC
Confidence             12233   333333322  22355666788888999999985  4 3699999999999999987664  45555443 


Q ss_pred             HHHHHHHcCCCH-HHHHHHHHHHH
Q 018543          214 ATRLAEKSNRSL-RRAILSFETCR  236 (354)
Q Consensus       214 l~~i~~~s~gd~-R~ai~~L~~~~  236 (354)
                      +..++..+.|+. |...++++.++
T Consensus       234 ~~~la~~~~G~~~~dl~~l~~~a~  257 (278)
T 1iy2_A          234 LALLAKRTPGFVGADLENLLNEAA  257 (278)
T ss_dssp             HHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHH
Confidence            788999999876 55556666554

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.61  E-value=1.8e-15  Score=149.43  Aligned_cols=177  Identities=18%  Similarity=0.257  Sum_probs=119.4

Q ss_pred             CCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543            9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (354)
Q Consensus         9 P~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~   75 (354)
                      ..+|+|+.|.++.++.|+.++.-           | .+| .+|||||||||||++|+++|+++..+   .+.+++..+. 
T Consensus       200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~---~~~v~~~~l~-  275 (806)
T 3cf2_A          200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLINGPEIM-  275 (806)
T ss_dssp             SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE---EEEEEHHHHH-
T ss_pred             CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe---EEEEEhHHhh-
Confidence            35899999998888888877641           2 233 39999999999999999999865211   1111111100 


Q ss_pred             cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----------
Q 018543           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------  144 (354)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------  144 (354)
                                              +.........+++++.....         ..+.||||||+|.+.+           
T Consensus       276 ------------------------sk~~gese~~lr~lF~~A~~---------~~PsIIfIDEiDal~~~r~~~~~~~~~  322 (806)
T 3cf2_A          276 ------------------------SKLAGESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHGEVER  322 (806)
T ss_dssp             ------------------------SSCTTHHHHHHHHHHHHHTT---------SCSEEEEEESGGGTCCTTTTCCCTTHH
T ss_pred             ------------------------cccchHHHHHHHHHHHHHHH---------cCCeEEEEehhcccccccCCCCChHHH
Confidence                                    01111122346666655433         2358999999998842           


Q ss_pred             HHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 018543          145 EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE  219 (354)
Q Consensus       145 ~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~  219 (354)
                      ...+.|+..|+...  .++.+|.+||+++.+.+++++  |+. .|+++.|+.++...+|+.++.+..+. ++..+..++.
T Consensus       323 riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~  401 (806)
T 3cf2_A          323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVAN  401 (806)
T ss_dssp             HHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHH
T ss_pred             HHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHH
Confidence            24566777776542  357788899999999999998  774 69999999999999998766433222 1223777888


Q ss_pred             HcCC
Q 018543          220 KSNR  223 (354)
Q Consensus       220 ~s~g  223 (354)
                      .+.|
T Consensus       402 ~T~G  405 (806)
T 3cf2_A          402 ETHG  405 (806)
T ss_dssp             HCCS
T ss_pred             hcCC
Confidence            7665

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.61  E-value=1.5e-15  Score=139.16  Aligned_cols=192  Identities=21%  Similarity=0.274  Sum_probs=120.6

Q ss_pred             cccCHHHHHHHHHHHh-------------cC--CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC
Q 018543           15 VIVHQDIAQNLKKLVT-------------EQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (354)
Q Consensus        15 ~~g~~~~~~~l~~~l~-------------~~--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
                      ++|++.+++.+..++.             ..  ...+++|+||||||||++|+++|+.+..   ..+.+++..       
T Consensus        17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~---~~~~~~~~~-------   86 (363)
T 3hws_A           17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV---PFTMADATT-------   86 (363)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEHHH-------
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC---CEEEechHH-------
Confidence            6899999998888773             11  2235999999999999999999997621   111111110       


Q ss_pred             ccccccccccccCceeeeCCCCC-CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-------------
Q 018543           80 RNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-------------  145 (354)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-------------  145 (354)
                               .        ..... +......++..+..    .+... ....+.++||||+|.++..             
T Consensus        87 ---------l--------~~~~~~g~~~~~~~~~~~~~----~~~~~-~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~  144 (363)
T 3hws_A           87 ---------L--------TEAGYVGEDVENIIQKLLQK----CDYDV-QKAQRGIVYIDQIDKISRKSDNPSITRDVSGE  144 (363)
T ss_dssp             ---------H--------TTCHHHHHHHTHHHHHHHHH----TTTCH-HHHHHCEEEEECHHHHCCCSSCC---CHHHHH
T ss_pred             ---------h--------cccccccccHHHHHHHHHHH----hhhhH-HhcCCcEEEEeChhhhcccccccccccccchH
Confidence                     0        00000 00001122222222    11000 0123479999999988765             


Q ss_pred             -HHHHHHHHHhhc---------------------cCceeEEEEecCC----------Cc---------------------
Q 018543          146 -AQHSLRRTMEKY---------------------SASCRLILCCNSS----------SK---------------------  172 (354)
Q Consensus       146 -~~~~Ll~~le~~---------------------~~~~~~Il~~~~~----------~~---------------------  172 (354)
                       .++.|++.|+..                     ..+..||++++..          .+                     
T Consensus       145 ~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~  224 (363)
T 3hws_A          145 GVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGE  224 (363)
T ss_dssp             HHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHH
T ss_pred             HHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHH
Confidence             899999999821                     1334456655532          11                     


Q ss_pred             --------------ccHHHhhhcce-eeecCCCHHHHHHHHHH----HHH-------HcC--CCCCHHHHHHHHHH---c
Q 018543          173 --------------VTEAIRSRCLN-IRINSPTEEQIVKVLEF----IAK-------KEG--LQLPSGFATRLAEK---S  221 (354)
Q Consensus       173 --------------l~~~l~sR~~~-i~~~~~~~~~~~~~L~~----~~~-------~~~--~~i~~~~l~~i~~~---s  221 (354)
                                    +.+++.+|+.. +.|.||+.+++.+++..    ...       ..+  +.+++++++.|++.   .
T Consensus       225 l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~  304 (363)
T 3hws_A          225 LLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMAR  304 (363)
T ss_dssp             HHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHT
T ss_pred             HHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCC
Confidence                          67899999975 56999999999888875    222       123  35789999999974   4


Q ss_pred             CCCHHHHHHHHHHHHhc
Q 018543          222 NRSLRRAILSFETCRVQ  238 (354)
Q Consensus       222 ~gd~R~ai~~L~~~~~~  238 (354)
                      .+++|..-+.++.+...
T Consensus       305 ~~gaR~L~~~ie~~~~~  321 (363)
T 3hws_A          305 KTGARGLRSIVEAALLD  321 (363)
T ss_dssp             TCTTTTHHHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHH
Confidence            67788888888866543

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.58  E-value=1.5e-14  Score=134.79  Aligned_cols=213  Identities=15%  Similarity=0.215  Sum_probs=128.7

Q ss_pred             cccCCCCCCCcccCHHHHHHHHHHH-hc---C---CCCeEEE--eCCCCCcHHHHHHHHHHHhcCC------CCcccccc
Q 018543            5 DKYRPKTLDQVIVHQDIAQNLKKLV-TE---Q---DCPHLLF--YGPPGSGKKTLIMALLRQVFGP------GAEKVKVE   69 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~~~~~l~~~l-~~---~---~~~~~ll--~Gp~G~GKTtla~~la~~l~~~------~~~~~~~~   69 (354)
                      .+|.|   ++++|.+...+.|..++ ..   +   ...++++  +||+|+|||++++.+++.+...      ....+.++
T Consensus        17 ~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~   93 (412)
T 1w5s_A           17 ENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN   93 (412)
T ss_dssp             TTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence            35555   77899988777777776 42   3   3445888  9999999999999999876321      11112222


Q ss_pred             cccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC------
Q 018543           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------  143 (354)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~------  143 (354)
                      +....    +...  -+..+.  ..+.......+.......+.+...+..        .+++.+|||||+|.+.      
T Consensus        94 ~~~~~----~~~~--~~~~l~--~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~llvlDe~~~l~~~~~~~  157 (412)
T 1w5s_A           94 AFNAP----NLYT--ILSLIV--RQTGYPIQVRGAPALDILKALVDNLYV--------ENHYLLVILDEFQSMLSSPRIA  157 (412)
T ss_dssp             GGGCC----SHHH--HHHHHH--HHHTCCCCCTTCCHHHHHHHHHHHHHH--------HTCEEEEEEESTHHHHSCTTSC
T ss_pred             CCCCC----CHHH--HHHHHH--HHhCCCCCCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEeCHHHHhhccCcc
Confidence            11000    0000  000000  000000000111111112222222221        1345799999999874      


Q ss_pred             HHHHHHHHHHHhhcc-----CceeEEEEecCCC---ccc---HHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcC--CCC
Q 018543          144 REAQHSLRRTMEKYS-----ASCRLILCCNSSS---KVT---EAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEG--LQL  209 (354)
Q Consensus       144 ~~~~~~Ll~~le~~~-----~~~~~Il~~~~~~---~l~---~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~--~~i  209 (354)
                      .+....|++.+++.+     .++.+|++++.++   .+.   +.+.+++ ..++|+|++.+++.+++.+.+...+  ..+
T Consensus       158 ~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~  237 (412)
T 1w5s_A          158 AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW  237 (412)
T ss_dssp             HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC
T ss_pred             hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC
Confidence            356666777776643     4566777877654   233   5566664 3499999999999999998776543  357


Q ss_pred             CHHHHHHHHHHcC------CCHHHHHHHHHHHH
Q 018543          210 PSGFATRLAEKSN------RSLRRAILSFETCR  236 (354)
Q Consensus       210 ~~~~l~~i~~~s~------gd~R~ai~~L~~~~  236 (354)
                      ++++++.+++.++      |++|.++.+++.+.
T Consensus       238 ~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~  270 (412)
T 1w5s_A          238 EPRHLELISDVYGEDKGGDGSARRAIVALKMAC  270 (412)
T ss_dssp             CHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence            8999999999999      99999999987654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.57  E-value=1.1e-13  Score=122.71  Aligned_cols=154  Identities=17%  Similarity=0.194  Sum_probs=93.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK  115 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~  115 (354)
                      .+||+||||||||++|+++|+++..   ..+.+++..+.                +         .........+++.++
T Consensus        38 ~lLl~GppGtGKT~la~aiA~~l~~---~~i~v~~~~l~----------------~---------~~~g~~~~~i~~~f~   89 (293)
T 3t15_A           38 ILGIWGGKGQGKSFQCELVFRKMGI---NPIMMSAGELE----------------S---------GNAGEPAKLIRQRYR   89 (293)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTC---CCEEEEHHHHH----------------C---------C---HHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC---CEEEEeHHHhh----------------h---------ccCchhHHHHHHHHH
Confidence            3999999999999999999998721   11222221111                0         000111123445554


Q ss_pred             HHHhcCCCCCCCCCCceEEEEeCCCcCCH-------------HHHHHHHHHHhh-------------ccCceeEEEEecC
Q 018543          116 EMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------------EAQHSLRRTMEK-------------YSASCRLILCCNS  169 (354)
Q Consensus       116 ~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------------~~~~~Ll~~le~-------------~~~~~~~Il~~~~  169 (354)
                      .......     ...+.||+|||+|.+..             ..++.|+..|+.             ...++.+|++||+
T Consensus        90 ~a~~~~~-----~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~  164 (293)
T 3t15_A           90 EAAEIIR-----KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND  164 (293)
T ss_dssp             HHHHHHT-----TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS
T ss_pred             HHHHHHh-----cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC
Confidence            4321111     13457999999988754             245788888862             2246889999999


Q ss_pred             CCcccHHHhh--hcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Q 018543          170 SSKVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR-SL  225 (354)
Q Consensus       170 ~~~l~~~l~s--R~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~g-d~  225 (354)
                      ++.+.+++++  |+..+-+ .|+.++...+++.+....++  +.+.+..+.....| ++
T Consensus       165 ~~~ld~al~R~~R~d~~i~-~P~~~~r~~Il~~~~~~~~~--~~~~l~~~~~~~~~~~l  220 (293)
T 3t15_A          165 FSTLYAPLIRDGRMEKFYW-APTREDRIGVCTGIFRTDNV--PAEDVVKIVDNFPGQSI  220 (293)
T ss_dssp             CCC--CHHHHHHHEEEEEE-CCCHHHHHHHHHHHHGGGCC--CHHHHHHHHHHSCSCCH
T ss_pred             cccCCHHHhCCCCCceeEe-CcCHHHHHHHHHHhccCCCC--CHHHHHHHhCCCCcccH
Confidence            9999999986  6654333 46999999999988776654  46666666665443 44

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.57  E-value=3.2e-14  Score=131.57  Aligned_cols=107  Identities=17%  Similarity=0.252  Sum_probs=79.7

Q ss_pred             ceEEEEeCCCcCCH------------HHHHHHHHHHhhc----------cCceeEEEEe----cCCCcccHHHhhhcce-
Q 018543          131 FKVLVLNEVDKLSR------------EAQHSLRRTMEKY----------SASCRLILCC----NSSSKVTEAIRSRCLN-  183 (354)
Q Consensus       131 ~~viiiDE~d~l~~------------~~~~~Ll~~le~~----------~~~~~~Il~~----~~~~~l~~~l~sR~~~-  183 (354)
                      ..++++||+|.+..            ..|++|+++||..          ..++.||+++    +++..++|.+++|+.+ 
T Consensus       251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~  330 (444)
T 1g41_A          251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR  330 (444)
T ss_dssp             HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred             CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhccccee
Confidence            45899999998842            3688999999852          3455566665    2555688999999976 


Q ss_pred             eeecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHH--------cCCCHHHHHHHHHHHHh
Q 018543          184 IRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEK--------SNRSLRRAILSFETCRV  237 (354)
Q Consensus       184 i~~~~~~~~~~~~~L~~-----------~~~~~~~--~i~~~~l~~i~~~--------s~gd~R~ai~~L~~~~~  237 (354)
                      +.|++++.+++.+++..           ....+++  .++++++..|++.        -+..+|.+-+.++.++.
T Consensus       331 i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~  405 (444)
T 1g41_A          331 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD  405 (444)
T ss_dssp             EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred             eeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence            89999999999999941           1112343  6889999999985        35678888877776553

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.56  E-value=1.1e-14  Score=143.94  Aligned_cols=184  Identities=23%  Similarity=0.246  Sum_probs=110.3

Q ss_pred             CCCCCcccCHHHHHHHHHHHhc-----------CC-CC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTE-----------QD-CP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~   76 (354)
                      .+++++.|.+++++.|+..+..           |. .+ .+|||||||||||.+|+++|.++..+   .+.+.+.     
T Consensus       474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~---f~~v~~~-----  545 (806)
T 3cf2_A          474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIKGP-----  545 (806)
T ss_dssp             CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE---EEECCHH-----
T ss_pred             CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc---eEEeccc-----
Confidence            5789999999999999887642           22 22 29999999999999999999975211   1111110     


Q ss_pred             CCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-----------
Q 018543           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------  145 (354)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-----------  145 (354)
                                         ++.. .+.......++++++......         +.||||||+|.+-..           
T Consensus       546 -------------------~l~s-~~vGese~~vr~lF~~Ar~~~---------P~IifiDEiDsl~~~R~~~~~~~~~~  596 (806)
T 3cf2_A          546 -------------------ELLT-MWFGESEANVREIFDKARQAA---------PCVLFFDELDSIAKARGGNIGDGGGA  596 (806)
T ss_dssp             -------------------HHHT-TTCSSCHHHHHHHHHHHHTTC---------SEEEECSCGGGCC-------------
T ss_pred             -------------------hhhc-cccchHHHHHHHHHHHHHHcC---------CceeechhhhHHhhccCCCCCCCchH
Confidence                               0000 111122245788877655433         479999999988421           


Q ss_pred             ---HHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018543          146 ---AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (354)
Q Consensus       146 ---~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i  217 (354)
                         ..+.|+..|+...  .++.+|.+||.++.+.+++.+  |+. .|+|+.|+.++...+++.++.+..+. ++-.++.|
T Consensus       597 ~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~l  675 (806)
T 3cf2_A          597 ADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFL  675 (806)
T ss_dssp             -CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC------
T ss_pred             HHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHH
Confidence               3567888887543  345666789999999999998  774 69999999999999998766543332 12235666


Q ss_pred             HHH----cCCCHHHHHHH
Q 018543          218 AEK----SNRSLRRAILS  231 (354)
Q Consensus       218 ~~~----s~gd~R~ai~~  231 (354)
                      ++.    |+.|+..+.+.
T Consensus       676 a~~t~g~SGadi~~l~~~  693 (806)
T 3cf2_A          676 AKMTNGFSGADLTEICQR  693 (806)
T ss_dssp             ----------CHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHH
Confidence            664    45577665554

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.52  E-value=9.4e-14  Score=131.17  Aligned_cols=191  Identities=13%  Similarity=0.110  Sum_probs=117.2

Q ss_pred             CCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC
Q 018543           13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA   92 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (354)
                      ..++|++++++.+...+..+.  |++|+||||||||++|+++++.+ +.........+. +.               +..
T Consensus        22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~~~~~-~~---------------t~~   82 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF-QNARAFEYLMTR-FS---------------TPE   82 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB-SSCCEEEEECCT-TC---------------CHH
T ss_pred             hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH-hhhhHHHHHHHh-cC---------------CHH
Confidence            357899999998888877664  69999999999999999999854 211100000000 00               000


Q ss_pred             ceeeeCCCCCCCcchhHHHHH--HHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---------Cce
Q 018543           93 NHVELSPSDAGFQDRYVVQEV--IKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------ASC  161 (354)
Q Consensus        93 ~~i~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---------~~~  161 (354)
                      +.++       ...   ....  ...+.....   .......|++|||++.+++..++.|+..|++..         ...
T Consensus        83 dL~G-------~~~---~~~~~~~g~~~~~~~---g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~  149 (500)
T 3nbx_X           83 EVFG-------PLS---IQALKDEGRYERLTS---GYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPM  149 (500)
T ss_dssp             HHHC-------CBC-------------CBCCT---TSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCC
T ss_pred             HhcC-------ccc---HHHHhhchhHHhhhc---cCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcch
Confidence            0000       000   0000  000100000   000134699999999999999999999997521         122


Q ss_pred             eE-EEEecCCC---cccHHHhhhcc-eeeecCCCH-HHHHHHHHHHH-----------------------HHcCCCCCHH
Q 018543          162 RL-ILCCNSSS---KVTEAIRSRCL-NIRINSPTE-EQIVKVLEFIA-----------------------KKEGLQLPSG  212 (354)
Q Consensus       162 ~~-Il~~~~~~---~l~~~l~sR~~-~i~~~~~~~-~~~~~~L~~~~-----------------------~~~~~~i~~~  212 (354)
                      ++ |++||...   ...+++.+|+. .+.+++|+. ++...++....                       ...++.++++
T Consensus       150 ~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~  229 (500)
T 3nbx_X          150 RLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH  229 (500)
T ss_dssp             CEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH
T ss_pred             hhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH
Confidence            34 66776543   25579999975 488888886 56667775432                       1236778899


Q ss_pred             HHHHHHHHc----------CCCHHHHHHHHHHH
Q 018543          213 FATRLAEKS----------NRSLRRAILSFETC  235 (354)
Q Consensus       213 ~l~~i~~~s----------~gd~R~ai~~L~~~  235 (354)
                      +++++++..          +.+.|.++.++..+
T Consensus       230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A  262 (500)
T 3nbx_X          230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLL  262 (500)
T ss_dssp             HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHH
Confidence            999888765          45788877776643

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.51  E-value=1e-13  Score=114.01  Aligned_cols=134  Identities=20%  Similarity=0.256  Sum_probs=82.1

Q ss_pred             ccccCCCCCCCccc----CHHHHHHHHHHHhcCC---CCeEEEeCCCCCcHHHHHHHHHHHhc-CCCCcccccccccccc
Q 018543            4 VDKYRPKTLDQVIV----HQDIAQNLKKLVTEQD---CPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKI   75 (354)
Q Consensus         4 ~ekyrP~~~~~~~g----~~~~~~~l~~~l~~~~---~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~   75 (354)
                      +++|+|.+|+++++    +..+.+.++.++++-.   ...++|+||||+||||+++++++.+. ..+...+.++..    
T Consensus         1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~----   76 (180)
T 3ec2_A            1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK----   76 (180)
T ss_dssp             CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH----
T ss_pred             CchhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH----
Confidence            47999999999986    4566677777776532   23499999999999999999999763 111110001000    


Q ss_pred             cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCC-CCCCCCceEEEEeCCC--cCCHHHHHHHHH
Q 018543           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID-TKGKRGFKVLVLNEVD--KLSREAQHSLRR  152 (354)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~viiiDE~d--~l~~~~~~~Ll~  152 (354)
                                                      ..+..+...+....... .....++.++||||++  .+++..++.|..
T Consensus        77 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~  124 (180)
T 3ec2_A           77 --------------------------------DLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISY  124 (180)
T ss_dssp             --------------------------------HHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred             --------------------------------HHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence                                            00111111111000000 0000135899999997  678888888888


Q ss_pred             HHhhcc-CceeEEEEecCCCcc
Q 018543          153 TMEKYS-ASCRLILCCNSSSKV  173 (354)
Q Consensus       153 ~le~~~-~~~~~Il~~~~~~~l  173 (354)
                      +++... .+..+|++||.+...
T Consensus       125 ll~~~~~~~~~ii~tsn~~~~~  146 (180)
T 3ec2_A          125 IITYRYNNLKSTIITTNYSLQR  146 (180)
T ss_dssp             HHHHHHHTTCEEEEECCCCSCC
T ss_pred             HHHHHHHcCCCEEEEcCCChhH
Confidence            886543 567788888887543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.50  E-value=1.2e-13  Score=109.47  Aligned_cols=132  Identities=18%  Similarity=0.167  Sum_probs=86.9

Q ss_pred             CcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccccc
Q 018543           14 QVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS   91 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (354)
                      +++|+....+.+...++.  ....+++|+||||||||++|+++++.....+...+ +++.                    
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~--------------------   60 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL--------------------   60 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC--------------------
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC--------------------
Confidence            578988877777766643  33345999999999999999999874322121111 2211                    


Q ss_pred             CceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543           92 ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                               ......  .....+..   .         ...+++|||+|.++++.|..|+..|+..+.++++|++||.+.
T Consensus        61 ---------~~~~~~--~~~~~~~~---a---------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~  117 (145)
T 3n70_A           61 ---------TPDNAP--QLNDFIAL---A---------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSL  117 (145)
T ss_dssp             ---------CTTTSS--CHHHHHHH---H---------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCH
T ss_pred             ---------CCCcch--hhhcHHHH---c---------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCH
Confidence                     100000  11222221   1         125799999999999999999999987777889999999753


Q ss_pred             -------cccHHHhhhcc--eeeecCC
Q 018543          172 -------KVTEAIRSRCL--NIRINSP  189 (354)
Q Consensus       172 -------~l~~~l~sR~~--~i~~~~~  189 (354)
                             .+.+.+..|+.  .|++||+
T Consensus       118 ~~~~~~~~~~~~L~~rl~~~~i~lPpL  144 (145)
T 3n70_A          118 VELAASNHIIAELYYCFAMTQIACLPL  144 (145)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred             HHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence                   46677878864  5777765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.49  E-value=6.6e-13  Score=116.49  Aligned_cols=176  Identities=19%  Similarity=0.213  Sum_probs=103.1

Q ss_pred             cCCCCCCCcccCHHHHHHHHHHHhc-----------C-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543            7 YRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (354)
Q Consensus         7 yrP~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~   73 (354)
                      +...+|+|+.|.+++++.|+..+..           + ..+ .++|+||||+||||+++++|+.+. .  +.+.+++..+
T Consensus         4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~-~--~~i~i~g~~l   80 (274)
T 2x8a_A            4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG-L--NFISVKGPEL   80 (274)
T ss_dssp             --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT-C--EEEEEETTTT
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC-C--CEEEEEcHHH
Confidence            3456899999999999888875421           1 223 399999999999999999999652 1  2222222111


Q ss_pred             cccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH---------
Q 018543           74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------  144 (354)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~---------  144 (354)
                      .                         +.........++.+++.....         .+.++++||+|.+..         
T Consensus        81 ~-------------------------~~~~~~~~~~i~~vf~~a~~~---------~p~i~~~Deid~~~~~r~~~~~~~  126 (274)
T 2x8a_A           81 L-------------------------NMYVGESERAVRQVFQRAKNS---------APCVIFFDEVDALCPRRSDRETGA  126 (274)
T ss_dssp             C-------------------------SSTTHHHHHHHHHHHHHHHHT---------CSEEEEEETCTTTCC---------
T ss_pred             H-------------------------hhhhhHHHHHHHHHHHHHHhc---------CCCeEeeehhhhhhcccCCCcchH
Confidence            0                         000000111244444432222         237999999987631         


Q ss_pred             --HHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHc-CCCCC-HHHHH
Q 018543          145 --EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKE-GLQLP-SGFAT  215 (354)
Q Consensus       145 --~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~-~~~i~-~~~l~  215 (354)
                        ...+.++..|...  .....++.++|+++.+.+++++  |+. .|.++.|+.++...+++.++... ...++ +-.++
T Consensus       127 ~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~  206 (274)
T 2x8a_A          127 SVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLE  206 (274)
T ss_dssp             CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHH
T ss_pred             HHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHH
Confidence              1234455555432  2345667788899899999987  764 69999999999999999876432 22222 22355


Q ss_pred             HHHH
Q 018543          216 RLAE  219 (354)
Q Consensus       216 ~i~~  219 (354)
                      .++.
T Consensus       207 ~la~  210 (274)
T 2x8a_A          207 AIAG  210 (274)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            5665

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.43  E-value=1.5e-13  Score=133.17  Aligned_cols=159  Identities=19%  Similarity=0.248  Sum_probs=94.1

Q ss_pred             CCcccCHHHHHHHHHHHhcCCCC-----------eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543           13 DQVIVHQDIAQNLKKLVTEQDCP-----------HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~~~~~-----------~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      ..++|++++++.+...+..|...           |+||+||||||||++|+++++.+ .....   ..+.      ..  
T Consensus       295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~-~r~~~---~~~~------~~--  362 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA-PRAVY---TTGK------GS--  362 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC-SCEEC---CCTT------CS--
T ss_pred             chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC-CCcee---cCCC------cc--
Confidence            45789999988887777666311           69999999999999999998744 11100   0000      00  


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---  158 (354)
                         ....+..................    . +   ..         +...+++|||+|.++++.+++|++.||+..   
T Consensus       363 ---~~~~l~~~~~~~~~~g~~~~~~G----~-l---~~---------A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i  422 (595)
T 3f9v_A          363 ---TAAGLTAAVVREKGTGEYYLEAG----A-L---VL---------ADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSI  422 (595)
T ss_dssp             ---TTTTSEEECSSGGGTSSCSEEEC----H-H---HH---------HSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEE
T ss_pred             ---ccccccceeeeccccccccccCC----e-e---Ee---------cCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEE
Confidence               00000000000000000000000    0 0   00         123699999999999999999999998632   


Q ss_pred             ----------CceeEEEEecCCC-------------cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHH
Q 018543          159 ----------ASCRLILCCNSSS-------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAK  203 (354)
Q Consensus       159 ----------~~~~~Il~~~~~~-------------~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~  203 (354)
                                .++.+|.++|...             .+.+++.||+. ++.+.+++..+...+++++..
T Consensus       423 ~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~  491 (595)
T 3f9v_A          423 AKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILD  491 (595)
T ss_dssp             ESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHT
T ss_pred             ecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHH
Confidence                      3466788888765             78999999994 555555555454555555544

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.43  E-value=2.5e-13  Score=107.29  Aligned_cols=128  Identities=16%  Similarity=0.176  Sum_probs=81.9

Q ss_pred             CcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccccc
Q 018543           14 QVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS   91 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (354)
                      +++|+....+.+...++.  ....+++|+||||||||++|+++++...    ..                          
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~----~~--------------------------   54 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT----PW--------------------------   54 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS----CE--------------------------
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC----Ce--------------------------
Confidence            578988877777776653  3334599999999999999998876431    11                          


Q ss_pred             CceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc-cCceeEEEEecCC
Q 018543           92 ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-SASCRLILCCNSS  170 (354)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~  170 (354)
                         +.++.....  . ......+   ...         +..+++|||++.++.+.|..|++.+++. +.++++|++||.+
T Consensus        55 ---~~~~~~~~~--~-~~~~~~~---~~a---------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~  116 (143)
T 3co5_A           55 ---VSPARVEYL--I-DMPMELL---QKA---------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYA  116 (143)
T ss_dssp             ---ECCSSTTHH--H-HCHHHHH---HHT---------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             ---EEechhhCC--h-HhhhhHH---HhC---------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence               111111100  0 0012222   111         2268999999999999999999999875 3568899998865


Q ss_pred             C-c----ccHHHhhhcc--eeeecCC
Q 018543          171 S-K----VTEAIRSRCL--NIRINSP  189 (354)
Q Consensus       171 ~-~----l~~~l~sR~~--~i~~~~~  189 (354)
                      . .    +.+.+..|+.  .|++||+
T Consensus       117 ~~~~~~~~~~~L~~rl~~~~i~lPpL  142 (143)
T 3co5_A          117 AGSDGISCEEKLAGLFSESVVRIPPL  142 (143)
T ss_dssp             TTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred             HHHHHhCccHHHHHHhcCcEEeCCCC
Confidence            3 2    4566777754  4677765

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.36  E-value=3.1e-11  Score=109.53  Aligned_cols=213  Identities=14%  Similarity=0.182  Sum_probs=124.1

Q ss_pred             CCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc-cCCCccccc--
Q 018543            8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-DAGSRNIDL--   84 (354)
Q Consensus         8 rP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~--   84 (354)
                      .|..-+.++|.+...+.|..++..+  +.++++||+|+|||++++.+++..     +.+.+++..... ........+  
T Consensus         7 ~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~   79 (350)
T 2qen_A            7 PKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-----PGILIDCRELYAERGHITREELIK   79 (350)
T ss_dssp             CCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEHHHHHHTTTCBCHHHHHH
T ss_pred             CCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEeecccccccCCCHHHHHH
Confidence            4445678999999999999999876  569999999999999999998864     122333221100 000000000  


Q ss_pred             cc-cccccC----ce--eeeCCCCCCCc-chhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-------HHHHH
Q 018543           85 EL-TTLSSA----NH--VELSPSDAGFQ-DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------EAQHS  149 (354)
Q Consensus        85 ~~-~~~~~~----~~--i~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------~~~~~  149 (354)
                      .+ ..+...    ..  +.+........ ....+.++++.+.....     ..++.+|+|||++.++.       +....
T Consensus        80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~vlvlDe~~~~~~~~~~~~~~~~~~  154 (350)
T 2qen_A           80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE-----ELGEFIVAFDEAQYLRFYGSRGGKELLAL  154 (350)
T ss_dssp             HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH-----HHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred             HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh-----ccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence            00 000000    00  00000000000 00123333333322110     01247999999998763       44555


Q ss_pred             HHHHHhhccCceeEEEEecCCC---c------ccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 018543          150 LRRTMEKYSASCRLILCCNSSS---K------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE  219 (354)
Q Consensus       150 Ll~~le~~~~~~~~Il~~~~~~---~------l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~  219 (354)
                      |...++.. .++.+|++++...   .      ...++..|. ..+++.|++.++..+++.......|..++++.+..+.+
T Consensus       155 L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~  233 (350)
T 2qen_A          155 FAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVE  233 (350)
T ss_dssp             HHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred             HHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            55555543 4677888765432   1      112234344 48999999999999999988877788889999999999


Q ss_pred             HcCCCHHHHHHHHH
Q 018543          220 KSNRSLRRAILSFE  233 (354)
Q Consensus       220 ~s~gd~R~ai~~L~  233 (354)
                      .++|++.-......
T Consensus       234 ~tgG~P~~l~~~~~  247 (350)
T 2qen_A          234 LLDGIPGWLVVFGV  247 (350)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHH
Confidence            99999975444443

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=99.35  E-value=4.2e-12  Score=109.21  Aligned_cols=135  Identities=14%  Similarity=0.205  Sum_probs=88.3

Q ss_pred             HHHHHHHHhcCCC--CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCC
Q 018543           22 AQNLKKLVTEQDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (354)
Q Consensus        22 ~~~l~~~l~~~~~--~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (354)
                      ...+..|++....  .+++|+||||||||.+++++|+.+.-.  +.                               ++.
T Consensus        90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~--G~-------------------------------vn~  136 (267)
T 1u0j_A           90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY--GC-------------------------------VNW  136 (267)
T ss_dssp             HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE--EE-------------------------------CCT
T ss_pred             HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhccc--ce-------------------------------eec
Confidence            3456667765412  249999999999999999999853100  00                               000


Q ss_pred             CCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHh--------hcc-----CceeEEEE
Q 018543          100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME--------KYS-----ASCRLILC  166 (354)
Q Consensus       100 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le--------~~~-----~~~~~Il~  166 (354)
                      +..                 ..+  ++.....++++.||+. +..++++.++.+++        ...     ..+++|++
T Consensus       137 ~~~-----------------~f~--l~~~~~k~i~l~Ee~~-~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIit  196 (267)
T 1u0j_A          137 TNE-----------------NFP--FNDCVDKMVIWWEEGK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVT  196 (267)
T ss_dssp             TCS-----------------SCT--TGGGSSCSEEEECSCC-EETTTHHHHHHHHTTCCEEC------CCEECCCCEEEE
T ss_pred             ccc-----------------ccc--cccccccEEEEecccc-chhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEE
Confidence            000                 000  0111233566666665 44567778888887        433     66889999


Q ss_pred             ecCC-----------CcccHHHhhhcceeeec--------CCCHHHHHHHHHHHHHHcCCCCC
Q 018543          167 CNSS-----------SKVTEAIRSRCLNIRIN--------SPTEEQIVKVLEFIAKKEGLQLP  210 (354)
Q Consensus       167 ~~~~-----------~~l~~~l~sR~~~i~~~--------~~~~~~~~~~L~~~~~~~~~~i~  210 (354)
                      ||..           ....++|+|||.+++|+        +++++++..++... +.++++++
T Consensus       197 sN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~  258 (267)
T 1u0j_A          197 SNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVE  258 (267)
T ss_dssp             ESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCC
T ss_pred             ecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCc
Confidence            9972           25668999999999999        89999999999854 66666654

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=99.31  E-value=6.5e-11  Score=108.18  Aligned_cols=191  Identities=18%  Similarity=0.236  Sum_probs=122.2

Q ss_pred             CCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccc
Q 018543           13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (354)
                      .+++|+......+...+..  ....+++++|++|+||+++++++...- ......+.++|..+.                
T Consensus       129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s-~r~~~fv~vnc~~~~----------------  191 (368)
T 3dzd_A          129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS-GRKGAFVDLNCASIP----------------  191 (368)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH-CCCSCEEEEESSSSC----------------
T ss_pred             ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc-cccCCcEEEEcccCC----------------
Confidence            4577876655555444432  222349999999999999999998743 222113333332111                


Q ss_pred             cCceeeeCCCCCCCcchhHHHHHHHHHHhcCC-CCCC--------CCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc---
Q 018543           91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRP-IDTK--------GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (354)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~--------~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~---  158 (354)
                                     ....-.++   +..... +...        ...+...+++||++.|+...|..|++.|++..   
T Consensus       192 ---------------~~~~~~~l---fg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~  253 (368)
T 3dzd_A          192 ---------------QELAESEL---FGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTR  253 (368)
T ss_dssp             ---------------TTTHHHHH---HEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECC
T ss_pred             ---------------hHHHHHHh---cCccccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCccc
Confidence                           00000011   011000 0000        00123579999999999999999999998631   


Q ss_pred             --------CceeEEEEecCCC-------cccHHHhhhcce--eeecCCCH--HHHHHHHHHHHH----HcC---CCCCHH
Q 018543          159 --------ASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSPTE--EQIVKVLEFIAK----KEG---LQLPSG  212 (354)
Q Consensus       159 --------~~~~~Il~~~~~~-------~l~~~l~sR~~~--i~~~~~~~--~~~~~~L~~~~~----~~~---~~i~~~  212 (354)
                              .++++|.+||...       .+.+.+..|+.+  |++||+..  +++...+.+.+.    +.+   ..++++
T Consensus       254 ~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~  333 (368)
T 3dzd_A          254 LGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEE  333 (368)
T ss_dssp             BTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHH
T ss_pred             CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence                    2567888888653       466788888764  66888876  676665555443    333   358999


Q ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 018543          213 FATRLAEKS-NRSLRRAILSFETCRVQ  238 (354)
Q Consensus       213 ~l~~i~~~s-~gd~R~ai~~L~~~~~~  238 (354)
                      +++.+..+. .||+|.+.|.++.++..
T Consensus       334 a~~~L~~~~wpGNvreL~n~i~~~~~~  360 (368)
T 3dzd_A          334 TKEYLMKQEWKGNVRELKNLIERAVIL  360 (368)
T ss_dssp             HHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence            999999987 99999999999988765

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.24  E-value=1.7e-11  Score=97.26  Aligned_cols=120  Identities=18%  Similarity=0.348  Sum_probs=74.4

Q ss_pred             CCCCCccc--CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543           10 KTLDQVIV--HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (354)
Q Consensus        10 ~~~~~~~g--~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
                      .+|++++.  +..++..+..+    ....++|+||+|+||||+++++++.+...+...                      
T Consensus        14 ~~~~~f~~g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~----------------------   67 (149)
T 2kjq_A           14 PSFDKFLGTENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNA----------------------   67 (149)
T ss_dssp             CCCCCCCSCCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCE----------------------
T ss_pred             cchhhcCcCccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcE----------------------
Confidence            35666643  45555555444    233499999999999999999999764311111                      


Q ss_pred             ccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccC-cee-EEE
Q 018543           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA-SCR-LIL  165 (354)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~-~~~-~Il  165 (354)
                             +.+...+....          .+          ..++++++|||++.++...+..|+.+++.... +.. +|+
T Consensus        68 -------~~~~~~~~~~~----------~~----------~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iii  120 (149)
T 2kjq_A           68 -------AYIDAASMPLT----------DA----------AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLL  120 (149)
T ss_dssp             -------EEEETTTSCCC----------GG----------GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             -------EEEcHHHhhHH----------HH----------HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEE
Confidence                   11221111110          00          12348999999999987778888888865432 233 777


Q ss_pred             EecCCCc---ccHHHhhhcc
Q 018543          166 CCNSSSK---VTEAIRSRCL  182 (354)
Q Consensus       166 ~~~~~~~---l~~~l~sR~~  182 (354)
                      +++.+..   ..+.++||+.
T Consensus       121 ts~~~p~~l~~~~~L~SRl~  140 (149)
T 2kjq_A          121 GSEYTPQQLVIREDLRTRMA  140 (149)
T ss_dssp             EESSCTTTSSCCHHHHHHGG
T ss_pred             ECCCCHHHccccHHHHHHHh
Confidence            7775432   2299999985

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=99.23  E-value=4.9e-10  Score=103.14  Aligned_cols=194  Identities=16%  Similarity=0.160  Sum_probs=120.7

Q ss_pred             CCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccc
Q 018543           12 LDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (354)
Q Consensus        12 ~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (354)
                      +..++|+....+.+...++.  ....+++++|++|+||+++|+++...........+.++|..+.               
T Consensus       136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~---------------  200 (387)
T 1ny5_A          136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP---------------  200 (387)
T ss_dssp             CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC---------------
T ss_pred             chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCC---------------
Confidence            45678876665555554443  2222389999999999999999987432222222222222111               


Q ss_pred             ccCceeeeCCCCCCCcchhHHHHHHHHHHhcCC-CC-----CC---CCCCceEEEEeCCCcCCHHHHHHHHHHHhhc---
Q 018543           90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP-ID-----TK---GKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---  157 (354)
Q Consensus        90 ~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~-----~~---~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~---  157 (354)
                                      ....-.++   +..... +.     ..   ...+..+++|||++.|+.+.|..|++.|++.   
T Consensus       201 ----------------~~~~~~el---fg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~  261 (387)
T 1ny5_A          201 ----------------RDIFEAEL---FGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFY  261 (387)
T ss_dssp             ----------------HHHHHHHH---HCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEEC
T ss_pred             ----------------HHHHHHHh---cCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEE
Confidence                            00000000   000000 00     00   0123368999999999999999999999863   


Q ss_pred             --------cCceeEEEEecCCC-------cccHHHhhhcc--eeeecCCCH--HHHHHHHHHHH----HHcCC---CCCH
Q 018543          158 --------SASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIA----KKEGL---QLPS  211 (354)
Q Consensus       158 --------~~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~~L~~~~----~~~~~---~i~~  211 (354)
                              +.++++|.+||...       .+.+.+..|..  .|++||+..  +++..++.+.+    .+.+.   .+++
T Consensus       262 ~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~  341 (387)
T 1ny5_A          262 RLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTK  341 (387)
T ss_dssp             CBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECH
T ss_pred             eCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence                    13577888888642       46677777764  467777753  66665555443    33343   4789


Q ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHHHhcC
Q 018543          212 GFATRLAEKS-NRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       212 ~~l~~i~~~s-~gd~R~ai~~L~~~~~~~  239 (354)
                      ++++.+..+. .||+|...|.++.++...
T Consensus       342 ~a~~~l~~~~wpGNvreL~~~i~~~~~~~  370 (387)
T 1ny5_A          342 SAQELLLSYPWYGNVRELKNVIERAVLFS  370 (387)
T ss_dssp             HHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence            9999999865 899999999999887653

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=99.21  E-value=5e-11  Score=97.88  Aligned_cols=116  Identities=18%  Similarity=0.258  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhcCCCC---eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeee
Q 018543           21 IAQNLKKLVTEQDCP---HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL   97 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~---~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   97 (354)
                      .+..|+.+++.  .|   +++|+||||+|||+++.++++.+.+..                                +.+
T Consensus        44 f~~~l~~~~~~--iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i--------------------------------~~f   89 (212)
T 1tue_A           44 FLGALKSFLKG--TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV--------------------------------ISF   89 (212)
T ss_dssp             HHHHHHHHHHT--CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE--------------------------------CCC
T ss_pred             HHHHHHHHHhc--CCcccEEEEECCCCCCHHHHHHHHHHHhCCCe--------------------------------eeE
Confidence            35666777763  34   599999999999999999999763210                                000


Q ss_pred             CCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC-HHHHHHHHHHHhhcc-------------CceeE
Q 018543           98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYS-------------ASCRL  163 (354)
Q Consensus        98 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~-------------~~~~~  163 (354)
                      ..+  ....         .+   .+     ..+.++++|||++.-. ......++..++..+             ...++
T Consensus        90 ans--~s~f---------~l---~~-----l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~Pl  150 (212)
T 1tue_A           90 VNS--TSHF---------WL---EP-----LTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPI  150 (212)
T ss_dssp             CCS--SSCG---------GG---GG-----GTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCE
T ss_pred             Eec--cchh---------hh---cc-----cCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCE
Confidence            000  0000         00   01     1234799999998422 112345566665432             23589


Q ss_pred             EEEecCC---CcccHHHhhhcceeeecCC
Q 018543          164 ILCCNSS---SKVTEAIRSRCLNIRINSP  189 (354)
Q Consensus       164 Il~~~~~---~~l~~~l~sR~~~i~~~~~  189 (354)
                      |++||..   +...+.|.||+..+.|+.+
T Consensus       151 IITtN~~~~~~~~~~~L~SRi~~f~F~~~  179 (212)
T 1tue_A          151 LLTTNIHPAKDNRWPYLESRITVFEFPNA  179 (212)
T ss_dssp             EEEESSCTTSSSSCHHHHTSCEEEECCSC
T ss_pred             EEecCCCcccccchhhhhhhEEEEEcCCC
Confidence            9999974   3566899999999998744

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.21  E-value=6.4e-10  Score=101.01  Aligned_cols=208  Identities=13%  Similarity=0.155  Sum_probs=121.2

Q ss_pred             CCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc-cCCCccccc-c
Q 018543            8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-DAGSRNIDL-E   85 (354)
Q Consensus         8 rP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-~   85 (354)
                      .|...+.++|.+...+.|.. +..   +.++++||+|+|||++++.+++.+...   .+.+++..+.. ...+...-. .
T Consensus         8 ~~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   80 (357)
T 2fna_A            8 PKDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYKDFLLE   80 (357)
T ss_dssp             CCCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHHHHHHH
T ss_pred             CCCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHHHHHHH
Confidence            33456789999999999988 765   579999999999999999999876321   22333221100 000000000 0


Q ss_pred             c-ccc--------------ccCce-------eeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC
Q 018543           86 L-TTL--------------SSANH-------VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS  143 (354)
Q Consensus        86 ~-~~~--------------~~~~~-------i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~  143 (354)
                      + ..+              .....       ........   ....+.+++..+....      . ++-+|+|||++.++
T Consensus        81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~------~-~~~vlvlDe~~~~~  150 (357)
T 2fna_A           81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRK---DRLSFANLLESFEQAS------K-DNVIIVLDEAQELV  150 (357)
T ss_dssp             HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC--------CCCHHHHHHHHHHTC------S-SCEEEEEETGGGGG
T ss_pred             HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCc---chhhHHHHHHHHHhcC------C-CCeEEEEECHHHhh
Confidence            0 000              00000       00000000   0112445555544321      1 25799999999875


Q ss_pred             H----HHHHHHHHHHhhccCceeEEEEecCCCc---------ccHHHhhhc-ceeeecCCCHHHHHHHHHHHHHHcCCCC
Q 018543          144 R----EAQHSLRRTMEKYSASCRLILCCNSSSK---------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQL  209 (354)
Q Consensus       144 ~----~~~~~Ll~~le~~~~~~~~Il~~~~~~~---------l~~~l~sR~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i  209 (354)
                      .    +....|....+.. .+..+|++++....         ...++..|. ..++++|++.++..+++...+...+...
T Consensus       151 ~~~~~~~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~  229 (357)
T 2fna_A          151 KLRGVNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF  229 (357)
T ss_dssp             GCTTCCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC
T ss_pred             ccCchhHHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence            3    3344454444443 35778888775421         112344454 6899999999999999998777667766


Q ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543          210 PSGFATRLAEKSNRSLRRAILSFETC  235 (354)
Q Consensus       210 ~~~~l~~i~~~s~gd~R~ai~~L~~~  235 (354)
                      ++.  ..+.+.++|++.-.......+
T Consensus       230 ~~~--~~i~~~t~G~P~~l~~~~~~~  253 (357)
T 2fna_A          230 KDY--EVVYEKIGGIPGWLTYFGFIY  253 (357)
T ss_dssp             CCH--HHHHHHHCSCHHHHHHHHHHH
T ss_pred             CcH--HHHHHHhCCCHHHHHHHHHHH
Confidence            654  889999999998665555443

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=99.20  E-value=2.3e-11  Score=101.76  Aligned_cols=58  Identities=19%  Similarity=0.250  Sum_probs=44.6

Q ss_pred             ccccCCCCCCCcccCH----HHHHHHHHHHhcCC----CCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543            4 VDKYRPKTLDQVIVHQ----DIAQNLKKLVTEQD----CPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~----~~~~~l~~~l~~~~----~~~~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      ..+|++.+|+++++..    .+.+.+..++....    ..+++|+||+|+|||++++++++.+...
T Consensus        16 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           16 PREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4578899999999743    35566677776542    1469999999999999999999987543

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=99.16  E-value=1.6e-10  Score=108.91  Aligned_cols=60  Identities=20%  Similarity=0.313  Sum_probs=43.8

Q ss_pred             CCcccccCCCCCCCcc-cCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543            1 MLWVDKYRPKTLDQVI-VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~-g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      .+|.+||||.+|+++- +|..++..+..++..+.. ++++.||||||||+++..++..+...
T Consensus        12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~   72 (459)
T 3upu_A           12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALIST   72 (459)
T ss_dssp             ---------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            4799999999999997 688888888888877653 79999999999999999999887544

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=99.06  E-value=4.6e-10  Score=100.01  Aligned_cols=55  Identities=24%  Similarity=0.387  Sum_probs=42.2

Q ss_pred             cccCCCCCCCcccC----HHHHHHHHHHHhcC---CCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543            5 DKYRPKTLDQVIVH----QDIAQNLKKLVTEQ---DCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus         5 ekyrP~~~~~~~g~----~~~~~~l~~~l~~~---~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.++|.+|+++++.    ..+...+..+++..   ...+++|+||||+|||++++++++.+.
T Consensus       116 ~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          116 KSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             GGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            45678899999863    33555666777652   234599999999999999999999874

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.99  E-value=4.6e-09  Score=85.73  Aligned_cols=68  Identities=15%  Similarity=0.268  Sum_probs=52.4

Q ss_pred             CceEEEEeC--C-CcCCHHHHHHHHHHHhhccCceeEEEEec--CCCcccHHHhhh--cceeeecCCCHHHHHHHHH
Q 018543          130 GFKVLVLNE--V-DKLSREAQHSLRRTMEKYSASCRLILCCN--SSSKVTEAIRSR--CLNIRINSPTEEQIVKVLE  199 (354)
Q Consensus       130 ~~~viiiDE--~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~--~~~~l~~~l~sR--~~~i~~~~~~~~~~~~~L~  199 (354)
                      +++++++||  + ..+++..++.+.+.+++.  ...+|++++  +...+.+.+++|  |.++.+.+.+.+++...+.
T Consensus        99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~  173 (178)
T 1ye8_A           99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL  173 (178)
T ss_dssp             TTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred             CCCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence            458999999  4 567899999999999873  344677774  556788899998  8899998888766665554

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.94  E-value=9.4e-10  Score=99.86  Aligned_cols=133  Identities=15%  Similarity=0.228  Sum_probs=80.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHH------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVV------  110 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i------  110 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++..+....+.            ...+.+.+++.......++      
T Consensus        32 ~~llGpsGsGKSTLLr~iaG-l~~p~~G~I~i~G~~~~~~~~~------------~r~ig~VfQ~~~l~p~ltV~eni~~   98 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPA------------ERGVGMVFQSYALYPHLSVAENMSF   98 (381)
T ss_dssp             EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTCCGG------------GSCEEEECTTCCCCTTSCHHHHHTH
T ss_pred             EEEEcCCCchHHHHHHHHHc-CCCCCCeEEEECCEECCCCCHH------------HCCEEEEecCCcCCCCCCHHHHHHH
Confidence            88999999999999999998 7788889998888765411111            0123333333333222122      


Q ss_pred             ----------------HHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543          111 ----------------QEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       111 ----------------~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~  156 (354)
                                      .++++.+.-     ..+..+|+            ..+++++++||+ ..|++..+..+++.+.+
T Consensus        99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~  178 (381)
T 3rlf_A           99 GLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR  178 (381)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence                            222222110     01111221            137899999997 88999998888888866


Q ss_pred             ccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          157 YSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       157 ~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      ...  +..+|++|++.+ ....+.+|+.+
T Consensus       179 l~~~~g~tii~vTHd~~-ea~~~aDri~v  206 (381)
T 3rlf_A          179 LHKRLGRTMIYVTHDQV-EAMTLADKIVV  206 (381)
T ss_dssp             HHHHHCCEEEEECSCHH-HHHHHCSEEEE
T ss_pred             HHHhCCCEEEEEECCHH-HHHHhCCEEEE
Confidence            532  456666666543 33456677643

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.94  E-value=8.3e-10  Score=95.45  Aligned_cols=133  Identities=17%  Similarity=0.240  Sum_probs=76.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh--------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY--------  108 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------  108 (354)
                      +.|.||+|+||||+++++++ +..+..+.+.+++....  ....    ..     ...+.+.+++.......        
T Consensus        44 ~~l~G~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~~--~~~~----~~-----~~~i~~v~q~~~l~~~ltv~enl~~  111 (256)
T 1vpl_A           44 FGLIGPNGAGKTTTLRIIST-LIKPSSGIVTVFGKNVV--EEPH----EV-----RKLISYLPEEAGAYRNMQGIEYLRF  111 (256)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEETT--TCHH----HH-----HTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECC--ccHH----HH-----hhcEEEEcCCCCCCCCCcHHHHHHH
Confidence            88999999999999999998 66788888888776442  0000    00     01123333322211111        


Q ss_pred             --------------HHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543          109 --------------VVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       109 --------------~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~  156 (354)
                                    .+.+.++.+.-     ..+..+|+            ..+++++++||+ ..|++..+..+.+.+.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~  191 (256)
T 1vpl_A          112 VAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ  191 (256)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence                          12222322210     01111221            257899999998 78999999999998876


Q ss_pred             cc-CceeEEEEecCCCcccHHHhhhcc
Q 018543          157 YS-ASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       157 ~~-~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .. .+..+|++|++.+ ....+.+|+.
T Consensus       192 l~~~g~tiiivtHd~~-~~~~~~d~v~  217 (256)
T 1vpl_A          192 ASQEGLTILVSSHNML-EVEFLCDRIA  217 (256)
T ss_dssp             HHHTTCEEEEEECCHH-HHTTTCSEEE
T ss_pred             HHhCCCEEEEEcCCHH-HHHHHCCEEE
Confidence            53 3455666665543 2334445543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.93  E-value=9.9e-10  Score=93.87  Aligned_cols=138  Identities=15%  Similarity=0.229  Sum_probs=78.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch---------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---------  107 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------  107 (354)
                      +.|.||+|+||||+++++++ +..+..+.+.+++..+.  .....   +.... ....+.+.+++......         
T Consensus        34 ~~iiG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~--~~~~~---~~~~~-~~~~i~~v~Q~~~l~~~~tv~enl~~  106 (235)
T 3tif_A           34 VSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTN--DLDDD---ELTKI-RRDKIGFVFQQFNLIPLLTALENVEL  106 (235)
T ss_dssp             EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECT--TCCHH---HHHHH-HHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHhc-CCCCCceEEEECCEEcc--cCCHH---HHHHH-hhccEEEEecCCccCCCCcHHHHHHH
Confidence            89999999999999999998 67888888888876543  11000   00000 00012222221111110         


Q ss_pred             ----------------hHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          108 ----------------YVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       108 ----------------~~i~~~~~~~~~------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                                      ..+.+.++.+.-      ..+..+|+            ..+++++++||+ ..|++..+..+++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~  186 (235)
T 3tif_A          107 PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ  186 (235)
T ss_dssp             HHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred             HHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence                            112223322211      01111221            257899999998 7899999999999


Q ss_pred             HHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       153 ~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+.+...  +..+|++|++.+ +. .+.+|+.+
T Consensus       187 ~l~~l~~~~g~tvi~vtHd~~-~~-~~~d~i~~  217 (235)
T 3tif_A          187 LLKKLNEEDGKTVVVVTHDIN-VA-RFGERIIY  217 (235)
T ss_dssp             HHHHHHHHHCCEEEEECSCHH-HH-TTSSEEEE
T ss_pred             HHHHHHHHcCCEEEEEcCCHH-HH-HhCCEEEE
Confidence            9876532  466777777764 32 45555543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.93  E-value=9.8e-10  Score=95.92  Aligned_cols=143  Identities=15%  Similarity=0.207  Sum_probs=81.0

Q ss_pred             hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCC-------
Q 018543           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA-------  102 (354)
Q Consensus        30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------  102 (354)
                      ..|..  +.|.||+|+||||+++++++ +..+..+.+.+++........      .....  ...+.+.+++.       
T Consensus        32 ~~Ge~--~~iiGpnGsGKSTLl~~l~G-l~~p~~G~I~~~G~~i~~~~~------~~~~~--~~~ig~v~Q~~~~~~~~~  100 (275)
T 3gfo_A           32 KRGEV--TAILGGNGVGKSTLFQNFNG-ILKPSSGRILFDNKPIDYSRK------GIMKL--RESIGIVFQDPDNQLFSA  100 (275)
T ss_dssp             ETTSE--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCCSHH------HHHHH--HHSEEEECSSGGGTCCSS
T ss_pred             cCCCE--EEEECCCCCCHHHHHHHHHc-CCCCCCeEEEECCEECCcccc------cHHHH--hCcEEEEEcCcccccccC
Confidence            34444  89999999999999999998 677888888888765420000      00000  01122222211       


Q ss_pred             -------------CCcc---hhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHH
Q 018543          103 -------------GFQD---RYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (354)
Q Consensus       103 -------------~~~~---~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~  148 (354)
                                   +...   ...+.+.++.+.-     ..+..+|+            ..+++++++||+ ..|++..+.
T Consensus       101 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~  180 (275)
T 3gfo_A          101 SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS  180 (275)
T ss_dssp             BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence                         1100   0112223322211     01111221            257899999997 789999999


Q ss_pred             HHHHHHhhcc-C-ceeEEEEecCCCcccHHHhhhccee
Q 018543          149 SLRRTMEKYS-A-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       149 ~Ll~~le~~~-~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++.+.+.. . +..+|+++++.+ ....+.+|+.++
T Consensus       181 ~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l  217 (275)
T 3gfo_A          181 EIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVM  217 (275)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEE
T ss_pred             HHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence            9998887653 2 455666666654 344566776433

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.93  E-value=1.3e-09  Score=94.77  Aligned_cols=144  Identities=16%  Similarity=0.184  Sum_probs=78.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc-ccccccccCc----------eeeeCCCCCCC-
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID-LELTTLSSAN----------HVELSPSDAGF-  104 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~i~~~~~~~~~-  104 (354)
                      +.|.||+|+||||+++++++ +..+..+.+.+++....  ....+.. ..+..+.+..          .+.+....... 
T Consensus        40 ~~liG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~--~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  116 (266)
T 4g1u_C           40 VAIIGPNGAGKSTLLRLLTG-YLSPSHGECHLLGQNLN--SWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGS  116 (266)
T ss_dssp             EEEECCTTSCHHHHHHHHTS-SSCCSSCEEEETTEETT--TSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCST
T ss_pred             EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECC--cCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcH
Confidence            88999999999999999998 67888888888876543  1110000 0000111100          00000000000 


Q ss_pred             cchhHHHHHHHHHHhcC-----CCCCCC------------CC------CceEEEEeCC-CcCCHHHHHHHHHHHhhccC-
Q 018543          105 QDRYVVQEVIKEMAKNR-----PIDTKG------------KR------GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-  159 (354)
Q Consensus       105 ~~~~~i~~~~~~~~~~~-----~~~~~~------------~~------~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-  159 (354)
                      .....+.+.++.+.-..     +..+|+            ..      +++++++||+ ..|++..+..+++.+.+... 
T Consensus       117 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~  196 (266)
T 4g1u_C          117 QDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ  196 (266)
T ss_dssp             THHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence            01112333333322110     011121            13      7899999998 78999999999998876532 


Q ss_pred             -ceeEEEEecCCCcccHHHhhhccee
Q 018543          160 -SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       160 -~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                       +..+|++|++. .....+.+|+.++
T Consensus       197 ~~~tvi~vtHdl-~~~~~~~d~v~vl  221 (266)
T 4g1u_C          197 EPLAVCCVLHDL-NLAALYADRIMLL  221 (266)
T ss_dssp             SSEEEEEECSCH-HHHHHHCSEEEEE
T ss_pred             CCCEEEEEEcCH-HHHHHhCCEEEEE
Confidence             24555555553 4445566665433

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.92  E-value=1.2e-09  Score=98.56  Aligned_cols=139  Identities=19%  Similarity=0.233  Sum_probs=82.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh--------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY--------  108 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------  108 (354)
                      +.|.||+|+||||++++++. +..++.+.+.+++.++.  ..+.+   +....  ...+.+.+++.......        
T Consensus        57 ~~IiGpnGaGKSTLlr~i~G-L~~p~~G~I~i~G~~i~--~~~~~---~~~~~--r~~Ig~v~Q~~~l~~~~TV~env~~  128 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNL-LERPTEGSVLVDGQELT--TLSES---ELTKA--RRQIGMIFQHFNLLSSRTVFGNVAL  128 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECS--SCCHH---HHHHH--HTTEEEECSSCCCCTTSCHHHHHHH
T ss_pred             EEEEcCCCchHHHHHHHHhc-CCCCCceEEEECCEECC--cCCHH---HHHHH--hCcEEEEeCCCccCCCCCHHHHHHH
Confidence            88999999999999999998 77888888888887554  11100   00000  01133333332221111        


Q ss_pred             --------------HHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543          109 --------------VVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       109 --------------~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~  156 (354)
                                    .+.++++.+.-     ..+..+|+            ..+++++++||+ ..|++..+..+++.+.+
T Consensus       129 ~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~  208 (366)
T 3tui_C          129 PLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD  208 (366)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence                          13333333211     11112221            257899999998 78999999999998876


Q ss_pred             cc--CceeEEEEecCCCcccHHHhhhccee
Q 018543          157 YS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       157 ~~--~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      ..  .+..+|++|++. .....+.+|+.++
T Consensus       209 l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl  237 (366)
T 3tui_C          209 INRRLGLTILLITHEM-DVVKRICDCVAVI  237 (366)
T ss_dssp             HHHHSCCEEEEEESCH-HHHHHHCSEEEEE
T ss_pred             HHHhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence            53  245566666654 4445666776443

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.89  E-value=2.6e-09  Score=92.68  Aligned_cols=137  Identities=15%  Similarity=0.223  Sum_probs=76.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch---------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---------  107 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------  107 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++..+. .......  ..     ...+.+.+++......         
T Consensus        53 ~~liG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~i~-~~~~~~~--~~-----~~~i~~v~Q~~~l~~~~tv~e~l~~  123 (263)
T 2olj_A           53 VVVIGPSGSGKSTFLRCLNL-LEDFDEGEIIIDGINLK-AKDTNLN--KV-----REEVGMVFQRFNLFPHMTVLNNITL  123 (263)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEESS-STTCCHH--HH-----HHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHc-CCCCCCcEEEECCEECC-CccccHH--HH-----hCcEEEEeCCCcCCCCCCHHHHHHH
Confidence            88999999999999999998 66788888888776442 0000000  00     0012222222111111         


Q ss_pred             --------------hHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHh
Q 018543          108 --------------YVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTME  155 (354)
Q Consensus       108 --------------~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le  155 (354)
                                    ..+.++++.+.-.     .+..+|+            ..+++++++||+ ..|++..+..+.+.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~  203 (263)
T 2olj_A          124 APMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK  203 (263)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence                          1122222222100     0111221            257899999998 7899999999999887


Q ss_pred             hcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543          156 KYS-ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       156 ~~~-~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +.. .+..+|++|++. .....+.+|+.+
T Consensus       204 ~l~~~g~tvi~vtHd~-~~~~~~~d~v~~  231 (263)
T 2olj_A          204 QLANEGMTMVVVTHEM-GFAREVGDRVLF  231 (263)
T ss_dssp             HHHHTTCEEEEECSCH-HHHHHHCSEEEE
T ss_pred             HHHhCCCEEEEEcCCH-HHHHHhCCEEEE
Confidence            653 345556655553 334455666543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.88  E-value=2e-09  Score=93.36  Aligned_cols=144  Identities=13%  Similarity=0.145  Sum_probs=78.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccccc----------CceeeeCCCC--CC-
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS----------ANHVELSPSD--AG-  103 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~i~~~~~~--~~-  103 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++.......+.......+..+.+          .+.+.+....  .+ 
T Consensus        36 ~~liG~nGsGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~  114 (257)
T 1g6h_A           36 TLIIGPNGSGKSTLINVITG-FLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESP  114 (257)
T ss_dssp             EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCH
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCc
Confidence            88999999999999999998 6677888888877654300000000000111111          0111111110  01 


Q ss_pred             ----------Ccc---hhHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          104 ----------FQD---RYVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       104 ----------~~~---~~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                                ...   ...+.++++.+.-.     .+..+|+            ..+++++++||+ ..|++..+..+.+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~  194 (257)
T 1g6h_A          115 LNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN  194 (257)
T ss_dssp             HHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             ccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence                      011   11233444333111     0111221            157899999997 8899999999999


Q ss_pred             HHhhcc-CceeEEEEecCCCcccHHHhhhcc
Q 018543          153 TMEKYS-ASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       153 ~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .+.+.. .+..+|+++++.+. ...+.+|+.
T Consensus       195 ~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~  224 (257)
T 1g6h_A          195 HVLELKAKGITFLIIEHRLDI-VLNYIDHLY  224 (257)
T ss_dssp             HHHHHHHTTCEEEEECSCCST-TGGGCSEEE
T ss_pred             HHHHHHHCCCEEEEEecCHHH-HHHhCCEEE
Confidence            887653 34566666666543 345666654

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.88  E-value=1e-08  Score=112.75  Aligned_cols=146  Identities=18%  Similarity=0.264  Sum_probs=90.1

Q ss_pred             HHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCC
Q 018543           24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG  103 (354)
Q Consensus        24 ~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  103 (354)
                      .+..++..++  ++||+||||||||++|+.++...  ++..                             .+.++.+...
T Consensus      1259 ll~~~l~~~~--~vLL~GPpGtGKT~la~~~l~~~--~~~~-----------------------------~~~infsa~t 1305 (2695)
T 4akg_A         1259 IFYDLLNSKR--GIILCGPPGSGKTMIMNNALRNS--SLYD-----------------------------VVGINFSKDT 1305 (2695)
T ss_dssp             HHHHHHHHTC--EEEEECSTTSSHHHHHHHHHHSC--SSCE-----------------------------EEEEECCTTC
T ss_pred             HHHHHHHCCC--eEEEECCCCCCHHHHHHHHHhcC--CCCc-----------------------------eEEEEeecCC
Confidence            4455666553  59999999999999996665432  1100                             1122222111


Q ss_pred             CcchhHHHHHHHHHHhcC----CCC-CC-CCCCceEEEEeCCCcCCH------HHHHHHHHHHhhcc------------C
Q 018543          104 FQDRYVVQEVIKEMAKNR----PID-TK-GKRGFKVLVLNEVDKLSR------EAQHSLRRTMEKYS------------A  159 (354)
Q Consensus       104 ~~~~~~i~~~~~~~~~~~----~~~-~~-~~~~~~viiiDE~d~l~~------~~~~~Ll~~le~~~------------~  159 (354)
                      .  ...++..+.......    ... .+ ..+++-|+||||++....      ...+.|+..+|...            .
T Consensus      1306 s--~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~ 1383 (2695)
T 4akg_A         1306 T--TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIE 1383 (2695)
T ss_dssp             C--HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEE
T ss_pred             C--HHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEec
Confidence            1  122333333321110    000 01 134557999999875432      35667777776411            2


Q ss_pred             ceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH
Q 018543          160 SCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK  204 (354)
Q Consensus       160 ~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~  204 (354)
                      ++.+|.++|.+.     .+.+++.+||.++.++.|+.+++..++..+...
T Consensus      1384 ~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A         1384 RIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp             SEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred             CEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHH
Confidence            356778888773     799999999999999999999999999988754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.88  E-value=1.4e-09  Score=92.36  Aligned_cols=127  Identities=18%  Similarity=0.216  Sum_probs=71.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh--------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY--------  108 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------  108 (354)
                      +.|.||+|+||||+++++++ +..+..+.+.+++....  .....   +.... ....+.+.+++.......        
T Consensus        33 ~~iiG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~--~~~~~---~~~~~-~~~~i~~v~q~~~l~~~~tv~e~l~~  105 (224)
T 2pcj_A           33 VSIIGASGSGKSTLLYILGL-LDAPTEGKVFLEGKEVD--YTNEK---ELSLL-RNRKLGFVFQFHYLIPELTALENVIV  105 (224)
T ss_dssp             EEEEECTTSCHHHHHHHHTT-SSCCSEEEEEETTEECC--SSCHH---HHHHH-HHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECC--CCCHH---HHHHH-HhCcEEEEecCcccCCCCCHHHHHHh
Confidence            88999999999999999997 66778888888776543  10000   00000 001122222222111111        


Q ss_pred             --------------HHHHHHHHHHhcC-----CCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543          109 --------------VVQEVIKEMAKNR-----PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       109 --------------~i~~~~~~~~~~~-----~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~  156 (354)
                                    .+.++++.+.-..     +..+|+            ..+++++++||+ ..|++.....+.+.+.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  185 (224)
T 2pcj_A          106 PMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK  185 (224)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence                          1222222221100     001121            257899999998 78999999999998866


Q ss_pred             cc-CceeEEEEecCC
Q 018543          157 YS-ASCRLILCCNSS  170 (354)
Q Consensus       157 ~~-~~~~~Il~~~~~  170 (354)
                      .. .+..+|++|++.
T Consensus       186 l~~~g~tvi~vtHd~  200 (224)
T 2pcj_A          186 INEGGTSIVMVTHER  200 (224)
T ss_dssp             HHHTTCEEEEECSCH
T ss_pred             HHHCCCEEEEEcCCH
Confidence            53 345666666664

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.87  E-value=2.7e-09  Score=96.18  Aligned_cols=138  Identities=18%  Similarity=0.255  Sum_probs=80.4

Q ss_pred             hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh-
Q 018543           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-  108 (354)
Q Consensus        30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-  108 (354)
                      ..|..  +.|.||+|+||||+++++++ +..++.+.+.+++..+.. .+..           ...+.+.+++....... 
T Consensus        39 ~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~-~~~~-----------~r~ig~v~Q~~~l~~~lt  103 (355)
T 1z47_A           39 REGEM--VGLLGPSGSGKTTILRLIAG-LERPTKGDVWIGGKRVTD-LPPQ-----------KRNVGLVFQNYALFQHMT  103 (355)
T ss_dssp             ETTCE--EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTT-CCGG-----------GSSEEEECGGGCCCTTSC
T ss_pred             CCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCEECCc-CChh-----------hCcEEEEecCcccCCCCC
Confidence            34544  88999999999999999998 678888888888765531 0000           01122222222111111 


Q ss_pred             ---------------------HHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHH
Q 018543          109 ---------------------VVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (354)
Q Consensus       109 ---------------------~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (354)
                                           .+.++++.+.-     ..+..+|+            ..+++++++||+ ..|++.....
T Consensus       104 v~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~  183 (355)
T 1z47_A          104 VYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRE  183 (355)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence                                 12223322210     01111221            257899999997 8899999988


Q ss_pred             HHHHHhhccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       150 Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +++.+.+...  +..+|++|++.+ ....+.+|+.+
T Consensus       184 l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~v  218 (355)
T 1z47_A          184 LRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLV  218 (355)
T ss_dssp             HHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred             HHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEE
Confidence            8888866432  455666666543 33455666543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.87  E-value=2.7e-09  Score=96.41  Aligned_cols=133  Identities=16%  Similarity=0.269  Sum_probs=79.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch---------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---------  107 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------  107 (354)
                      +.|.||+|+||||+.+++++ +..++.+.+.+++..+....+. +           ..+.+.+++......         
T Consensus        32 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~-~-----------r~ig~v~Q~~~l~~~ltv~eni~~   98 (359)
T 2yyz_A           32 VALLGPSGCGKTTTLLMLAG-IYKPTSGEIYFDDVLVNDIPPK-Y-----------REVGMVFQNYALYPHMTVFENIAF   98 (359)
T ss_dssp             EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGG-G-----------TTEEEECSSCCCCTTSCHHHHHHG
T ss_pred             EEEEcCCCchHHHHHHHHHC-CCCCCccEEEECCEECCCCChh-h-----------CcEEEEecCcccCCCCCHHHHHHH
Confidence            88999999999999999998 6788888888888765310010 0           112222222111111         


Q ss_pred             -------------hHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543          108 -------------YVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       108 -------------~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~  156 (354)
                                   ..+.++++.+.-     ..+..+|+            ..+++++++||+ ..|++.....++..+.+
T Consensus        99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  178 (359)
T 2yyz_A           99 PLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH  178 (359)
T ss_dssp             GGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence                         123344433211     11112221            257899999997 78999999888888866


Q ss_pred             ccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          157 YSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       157 ~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      ...  +..+|++|++.+ ....+.+|+.+
T Consensus       179 l~~~~g~tvi~vTHd~~-~~~~~adri~v  206 (359)
T 2yyz_A          179 LQQELGITSVYVTHDQA-EAMTMASRIAV  206 (359)
T ss_dssp             HHHHHCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred             HHHhcCCEEEEEcCCHH-HHHHhCCEEEE
Confidence            432  456677666643 33455666543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.86  E-value=3.4e-09  Score=95.91  Aligned_cols=132  Identities=20%  Similarity=0.321  Sum_probs=79.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhH-------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV-------  109 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------  109 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++..+....+.            ...+.+.+++.......+       
T Consensus        32 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~------------~r~ig~v~Q~~~l~~~ltv~eni~~   98 (362)
T 2it1_A           32 MALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTELPPK------------DRNVGLVFQNWALYPHMTVYKNIAF   98 (362)
T ss_dssp             EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGG------------GTTEEEECTTCCCCTTSCHHHHHHH
T ss_pred             EEEECCCCchHHHHHHHHhc-CCCCCceEEEECCEECCcCCHh------------HCcEEEEecCcccCCCCCHHHHHHH
Confidence            88999999999999999998 6788888888888755310000            112333333332222111       


Q ss_pred             ---------------HHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543          110 ---------------VQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       110 ---------------i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~  156 (354)
                                     +.+.++.+.-.     .+..+|+            ..+++++++||+ ..|++.....++..+.+
T Consensus        99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  178 (362)
T 2it1_A           99 PLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR  178 (362)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence                           22222221110     0111221            257899999997 88999999888888866


Q ss_pred             ccC--ceeEEEEecCCCcccHHHhhhcc
Q 018543          157 YSA--SCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       157 ~~~--~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      ...  +..+|++|++.+. ...+.+|+.
T Consensus       179 l~~~~g~tvi~vTHd~~~-a~~~adri~  205 (362)
T 2it1_A          179 LQKELGITTVYVTHDQAE-ALAMADRIA  205 (362)
T ss_dssp             HHHHHTCEEEEEESCHHH-HHHHCSEEE
T ss_pred             HHHhCCCEEEEECCCHHH-HHHhCCEEE
Confidence            532  4567777766433 345556654

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.85  E-value=3.4e-08  Score=91.05  Aligned_cols=171  Identities=16%  Similarity=0.155  Sum_probs=102.3

Q ss_pred             cccCHHHHHHHHHHHhcCC-----CCeEEEeCCCCCcHHHHHHHH-HHHhcCCCCcccccccccccccCCCccccccccc
Q 018543           15 VIVHQDIAQNLKKLVTEQD-----CPHLLFYGPPGSGKKTLIMAL-LRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (354)
Q Consensus        15 ~~g~~~~~~~l~~~l~~~~-----~~~~ll~Gp~G~GKTtla~~l-a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
                      ++||+.++..+.-.+-.|.     -.|+||.|+||+ ||.+++++ ++ +....   +...+.     .+      ....
T Consensus       215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~-i~pR~---~ft~g~-----~s------s~~g  278 (506)
T 3f8t_A          215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDH-LAPRG---VYVDLR-----RT------ELTD  278 (506)
T ss_dssp             STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHH-TCSSE---EEEEGG-----GC------CHHH
T ss_pred             cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHH-hCCCe---EEecCC-----CC------CccC
Confidence            8899999888877776653     126999999999 99999999 65 43211   100000     00      0000


Q ss_pred             cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc---------cC
Q 018543           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------SA  159 (354)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~---------~~  159 (354)
                      +...   ...+  .+ .. .....+    .         .+...++++||++.+++..|.+|++.||+.         +.
T Consensus       279 Lt~s---~r~~--tG-~~-~~~G~l----~---------LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lpa  338 (506)
T 3f8t_A          279 LTAV---LKED--RG-WA-LRAGAA----V---------LADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNA  338 (506)
T ss_dssp             HSEE---EEES--SS-EE-EEECHH----H---------HTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEEC
T ss_pred             ceEE---EEcC--CC-cc-cCCCee----E---------EcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCC
Confidence            0000   0011  01 00 000000    0         122379999999999999999999999863         45


Q ss_pred             ceeEEEEecCCC-----------cccHHHhhhcceee--ec-------------CCCHHHHHHHHHHHH-HHcCCCCCHH
Q 018543          160 SCRLILCCNSSS-----------KVTEAIRSRCLNIR--IN-------------SPTEEQIVKVLEFIA-KKEGLQLPSG  212 (354)
Q Consensus       160 ~~~~Il~~~~~~-----------~l~~~l~sR~~~i~--~~-------------~~~~~~~~~~L~~~~-~~~~~~i~~~  212 (354)
                      .+.+|.++|...           .+.+++.||+..+.  ..             ..+.+++.+++...- ..-...++++
T Consensus       339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~e  418 (506)
T 3f8t_A          339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEE  418 (506)
T ss_dssp             CCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHH
T ss_pred             CeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHH
Confidence            677777777654           78999999994322  22             234445555554332 1225667888


Q ss_pred             HHHHHHHHc
Q 018543          213 FATRLAEKS  221 (354)
Q Consensus       213 ~l~~i~~~s  221 (354)
                      +.++|++..
T Consensus       419 a~~yI~~~y  427 (506)
T 3f8t_A          419 ARKRLEHWY  427 (506)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888777653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.85  E-value=4.4e-09  Score=95.68  Aligned_cols=139  Identities=16%  Similarity=0.276  Sum_probs=80.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh--------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY--------  108 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------  108 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++..+.  ......  ...  .....+.+.+++.......        
T Consensus        32 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~~~--~~~~~~--~~~--~~~r~ig~v~Q~~~l~~~ltv~eni~~  104 (372)
T 1g29_1           32 MILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVA--DPEKGI--FVP--PKDRDIAMVFQSYALYPHMTVYDNIAF  104 (372)
T ss_dssp             EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEEEE--EGGGTE--ECC--GGGSSEEEECSCCCCCTTSCHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHc-CCCCCccEEEECCEECc--cccccc--cCC--HhHCCEEEEeCCCccCCCCCHHHHHHH
Confidence            88999999999999999998 67888888888887654  100000  000  0011233333333222211        


Q ss_pred             --------------HHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543          109 --------------VVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       109 --------------~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~  156 (354)
                                    .+.++++.+.-     ..+..+|+            ..+++++++||+ ..|++.....++..+.+
T Consensus       105 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  184 (372)
T 1g29_1          105 PLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK  184 (372)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence                          12233332211     01111221            157899999997 78999999888888866


Q ss_pred             ccC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          157 YSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       157 ~~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      ...  +..+|++|++.+ ....+.+|+.+
T Consensus       185 l~~~~g~tvi~vTHd~~-~a~~~adri~v  212 (372)
T 1g29_1          185 LQRQLGVTTIYVTHDQV-EAMTMGDRIAV  212 (372)
T ss_dssp             HHHHHTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred             HHHhcCCEEEEECCCHH-HHHHhCCEEEE
Confidence            432  456777766643 33455666543

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.84  E-value=4.9e-09  Score=90.23  Aligned_cols=138  Identities=21%  Similarity=0.267  Sum_probs=76.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc-ccccccccccCc---------eeeeCCCCCCCcc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELTTLSSAN---------HVELSPSDAGFQD  106 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~i~~~~~~~~~~~  106 (354)
                      +.|.||+|+||||+++++++ +..+..+.+.+++....  ..... ....+..+.+..         .+.+..   ....
T Consensus        38 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~---~~~~  111 (247)
T 2ff7_A           38 IGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDLA--LADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN---PGMS  111 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEETT--TSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTC---TTCC
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhh--hCCHHHHHhcEEEEeCCCccccccHHHHHhccC---CCCC
Confidence            89999999999999999998 66788888888776443  10000 000011111110         011100   0011


Q ss_pred             hhHHHHHHHHH-----HhcCC-----------CCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhc
Q 018543          107 RYVVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY  157 (354)
Q Consensus       107 ~~~i~~~~~~~-----~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~  157 (354)
                      ...+.+.++.+     ....+           ..+|+            ..+++++++||+ ..|++.....+.+.+.+.
T Consensus       112 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~  191 (247)
T 2ff7_A          112 VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI  191 (247)
T ss_dssp             HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            11222332221     11111           12221            257899999998 789999999999988766


Q ss_pred             cCceeEEEEecCCCcccHHHhhhcc
Q 018543          158 SASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       158 ~~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      ..+..+|+++++.+.+ . ..+|+.
T Consensus       192 ~~g~tviivtH~~~~~-~-~~d~v~  214 (247)
T 2ff7_A          192 CKGRTVIIIAHRLSTV-K-NADRII  214 (247)
T ss_dssp             HTTSEEEEECSSGGGG-T-TSSEEE
T ss_pred             cCCCEEEEEeCCHHHH-H-hCCEEE
Confidence            4556677777765533 2 245543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.83  E-value=5.5e-09  Score=94.19  Aligned_cols=145  Identities=15%  Similarity=0.214  Sum_probs=78.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC-ccccccccccccCc----------eeeeCCCCCCCc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-RNIDLELTTLSSAN----------HVELSPSDAGFQ  105 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~i~~~~~~~~~~  105 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++..+...... ......+..+.+..          .+.+.....+..
T Consensus        33 ~~llGpsGsGKSTLLr~iaG-l~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~  111 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAG-FEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGR  111 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHT-SSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCC
T ss_pred             EEEECCCCchHHHHHHHHhc-CCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCC
Confidence            88999999999999999998 7788889999888765200000 00000111111110          011111100111


Q ss_pred             c---hhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhc--cCcee
Q 018543          106 D---RYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY--SASCR  162 (354)
Q Consensus       106 ~---~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~--~~~~~  162 (354)
                      .   ...+.+.++.+.-     ..+..+|+            ..+++++++||+ ..|++.....++..+.+.  ..+..
T Consensus       112 ~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~t  191 (359)
T 3fvq_A          112 TAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKS  191 (359)
T ss_dssp             SHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             hHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence            1   1123444443321     11112221            257899999997 889998888887655332  23456


Q ss_pred             EEEEecCCCcccHHHhhhcce
Q 018543          163 LILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       163 ~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +|++|++.+ ....+.+|+.+
T Consensus       192 vi~vTHd~~-ea~~~aDri~v  211 (359)
T 3fvq_A          192 AVFVSHDRE-EALQYADRIAV  211 (359)
T ss_dssp             EEEECCCHH-HHHHHCSEEEE
T ss_pred             EEEEeCCHH-HHHHHCCEEEE
Confidence            666666544 33456677643

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.83  E-value=3.3e-09  Score=96.29  Aligned_cols=142  Identities=14%  Similarity=0.227  Sum_probs=80.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------eeeeCCCCCCCcc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN----------HVELSPSDAGFQD  106 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~  106 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++..+....+ .+  ..+..+.+..          .+.+.....+...
T Consensus        40 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~-~~--r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~  115 (372)
T 1v43_A           40 LVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTYLPP-KD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK  115 (372)
T ss_dssp             EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCG-GG--GTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred             EEEECCCCChHHHHHHHHHc-CCCCCceEEEECCEECCCCCh-hh--CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence            88999999999999999998 778888888888876531011 01  0111111111          0111110011111


Q ss_pred             ---hhHHHHHHHHHH-----hcCCCCCCCC------------CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeE
Q 018543          107 ---RYVVQEVIKEMA-----KNRPIDTKGK------------RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRL  163 (354)
Q Consensus       107 ---~~~i~~~~~~~~-----~~~~~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~  163 (354)
                         ...+.++++.+.     ...+..+|+.            .+++++++||+ ..|++.....++..+.+...  +..+
T Consensus       116 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv  195 (372)
T 1v43_A          116 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT  195 (372)
T ss_dssp             HHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence               112344444331     1122233322            57899999997 78999999988888866532  4567


Q ss_pred             EEEecCCCcccHHHhhhcce
Q 018543          164 ILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       164 Il~~~~~~~l~~~l~sR~~~  183 (354)
                      |++|++.+ ....+.+|+.+
T Consensus       196 i~vTHd~~-~a~~~adri~v  214 (372)
T 1v43_A          196 IYVTHDQV-EAMTMGDRIAV  214 (372)
T ss_dssp             EEEESCHH-HHHHHCSEEEE
T ss_pred             EEEeCCHH-HHHHhCCEEEE
Confidence            77766643 33455666543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.82  E-value=2.3e-09  Score=91.77  Aligned_cols=144  Identities=10%  Similarity=0.174  Sum_probs=77.9

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCc----------eeeeCCCCCCC
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN----------HVELSPSDAGF  104 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~  104 (354)
                      ..+.|.||+|+||||+++++++ +..+..+.+.+++..... .+..+.  .+..+.+..          .+.+.....+.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~-~~~~~~--~i~~v~q~~~l~~~ltv~enl~~~~~~~~~  100 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAG-IVKPDRGEVRLNGADITP-LPPERR--GIGFVPQDYALFPHLSVYRNIAYGLRNVER  100 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTT-SCTTTS--CCBCCCSSCCCCTTSCHHHHHHTTCTTSCH
T ss_pred             EEEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCc-CchhhC--cEEEEcCCCccCCCCcHHHHHHHHHHHcCC
Confidence            4488999999999999999998 667888888888765430 000000  111111110          01010000000


Q ss_pred             c-chhHHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeE
Q 018543          105 Q-DRYVVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRL  163 (354)
Q Consensus       105 ~-~~~~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~  163 (354)
                      . ....+.+.++.+.-.     .+..+|+            ..+++++++||+ ..|++..+..+.+.+.+...  +..+
T Consensus       101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tv  180 (240)
T 2onk_A          101 VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI  180 (240)
T ss_dssp             HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred             chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            0 011122333222110     0111221            257899999998 78999999999998876532  4556


Q ss_pred             EEEecCCCcccHHHhhhcce
Q 018543          164 ILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       164 Il~~~~~~~l~~~l~sR~~~  183 (354)
                      |++|++.+ ....+.+|+.+
T Consensus       181 i~vtHd~~-~~~~~~d~i~~  199 (240)
T 2onk_A          181 LHVTHDLI-EAAMLADEVAV  199 (240)
T ss_dssp             EEEESCHH-HHHHHCSEEEE
T ss_pred             EEEeCCHH-HHHHhCCEEEE
Confidence            66666543 23445555543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.82  E-value=5.5e-09  Score=87.71  Aligned_cols=125  Identities=11%  Similarity=0.199  Sum_probs=73.6

Q ss_pred             hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc----
Q 018543           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ----  105 (354)
Q Consensus        30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----  105 (354)
                      ..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..+.  .  .+           ..+.+.+++....    
T Consensus        33 ~~Ge~--~~iiG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~~--~--~~-----------~~i~~v~q~~~~~~~~t   94 (214)
T 1sgw_A           33 EKGNV--VNFHGPNGIGKTTLLKTIST-YLKPLKGEIIYNGVPIT--K--VK-----------GKIFFLPEEIIVPRKIS   94 (214)
T ss_dssp             ETTCC--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEEGG--G--GG-----------GGEEEECSSCCCCTTSB
T ss_pred             cCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEhh--h--hc-----------CcEEEEeCCCcCCCCCC
Confidence            44554  88999999999999999998 66777888887775432  0  00           0111111111110    


Q ss_pred             ----------------chhHHHHHHHHHHhcC----CCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          106 ----------------DRYVVQEVIKEMAKNR----PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       106 ----------------~~~~i~~~~~~~~~~~----~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                                      ....+.+.++.+.-..    +..+|+            ..+++++++||+ ..|++.....+.+
T Consensus        95 v~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~  174 (214)
T 1sgw_A           95 VEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK  174 (214)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHH
Confidence                            1122334443332111    111121            257899999998 7889888888888


Q ss_pred             HHhhcc-CceeEEEEecCCCc
Q 018543          153 TMEKYS-ASCRLILCCNSSSK  172 (354)
Q Consensus       153 ~le~~~-~~~~~Il~~~~~~~  172 (354)
                      .+.+.. .+..+|++|++.+.
T Consensus       175 ~l~~~~~~g~tiiivtHd~~~  195 (214)
T 1sgw_A          175 SILEILKEKGIVIISSREELS  195 (214)
T ss_dssp             HHHHHHHHHSEEEEEESSCCT
T ss_pred             HHHHHHhCCCEEEEEeCCHHH
Confidence            886653 24556677766543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.81  E-value=2.5e-09  Score=91.71  Aligned_cols=144  Identities=10%  Similarity=0.103  Sum_probs=78.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ceeeeCCCCCCCcc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELSPSDAGFQD  106 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~  106 (354)
                      +.|.||+|+||||+++++++ +..+..+.+.+++.......+.......+..+.+.          +.+.+.........
T Consensus        35 ~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~  113 (240)
T 1ji0_A           35 VTLIGANGAGKTTTLSAIAG-LVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE  113 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSS
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHH
Confidence            88999999999999999998 66788888888776542000000000001111111          11111100000011


Q ss_pred             --hhHHHHHHHHHH-h-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEE
Q 018543          107 --RYVVQEVIKEMA-K-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLI  164 (354)
Q Consensus       107 --~~~i~~~~~~~~-~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~I  164 (354)
                        ...+.++++.+. -     ..+..+|+            ..+++++++||+ ..|++..+..+.+.+.+.. .+..+|
T Consensus       114 ~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi  193 (240)
T 1ji0_A          114 GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL  193 (240)
T ss_dssp             HHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence              112334433331 1     11112221            257899999998 7899999999999887653 345667


Q ss_pred             EEecCCCcccHHHhhhcc
Q 018543          165 LCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       165 l~~~~~~~l~~~l~sR~~  182 (354)
                      ++|++.+ ....+.+|+.
T Consensus       194 ~vtHd~~-~~~~~~d~v~  210 (240)
T 1ji0_A          194 LVEQNAL-GALKVAHYGY  210 (240)
T ss_dssp             EEESCHH-HHHHHCSEEE
T ss_pred             EEecCHH-HHHHhCCEEE
Confidence            7666643 2344555543

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.80  E-value=4.2e-09  Score=90.62  Aligned_cols=140  Identities=19%  Similarity=0.231  Sum_probs=74.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccCc----------eeeeCCCCCCCc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSAN----------HVELSPSDAGFQ  105 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~i~~~~~~~~~~  105 (354)
                      +.|.||+|+||||+++++++ +..+. +.+.+++....  ...... ...+..+.+..          .+.+.. .... 
T Consensus        29 ~~liG~NGsGKSTLlk~l~G-l~~p~-G~i~~~g~~~~--~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~~-  102 (249)
T 2qi9_C           29 LHLVGPNGAGKSTLLARMAG-MTSGK-GSIQFAGQPLE--AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-HDKT-  102 (249)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCE-EEEEETTEEGG--GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC-SSTT-
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCC-eEEEECCEECC--cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh-ccCC-
Confidence            88999999999999999998 56677 88888776442  100000 00011111100          010100 0000 


Q ss_pred             chhHHHHHHHHHHhc-----CCCCCCCC------------CCce-------EEEEeCC-CcCCHHHHHHHHHHHhhcc-C
Q 018543          106 DRYVVQEVIKEMAKN-----RPIDTKGK------------RGFK-------VLVLNEV-DKLSREAQHSLRRTMEKYS-A  159 (354)
Q Consensus       106 ~~~~i~~~~~~~~~~-----~~~~~~~~------------~~~~-------viiiDE~-d~l~~~~~~~Ll~~le~~~-~  159 (354)
                      ....+.+.++.+.-.     .+..+|+.            .+++       ++++||+ ..|++..+..+.+.+.+.. .
T Consensus       103 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~  182 (249)
T 2qi9_C          103 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ  182 (249)
T ss_dssp             CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence            112233444332111     01112210            2456       9999998 7899999999999987653 3


Q ss_pred             ceeEEEEecCCCcccHHHhhhcce
Q 018543          160 SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       160 ~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +..+|+++++. .....+.+|+.+
T Consensus       183 g~tviivtHd~-~~~~~~~d~v~~  205 (249)
T 2qi9_C          183 GLAIVMSSHDL-NHTLRHAHRAWL  205 (249)
T ss_dssp             TCEEEEECSCH-HHHHHHCSEEEE
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEE
Confidence            44555555543 334455566543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.79  E-value=1.4e-09  Score=96.25  Aligned_cols=125  Identities=18%  Similarity=0.358  Sum_probs=74.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc-----------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ-----------  105 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------  105 (354)
                      +.|.||+|+||||+++++++ ++.+..+.+.+++....  ....      ..  ....+.+.+++....           
T Consensus        83 vaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~G~~i~--~~~~------~~--~r~~i~~v~Q~~~lf~~Tv~eNi~~~  151 (306)
T 3nh6_A           83 LALVGPSGAGKSTILRLLFR-FYDISSGCIRIDGQDIS--QVTQ------AS--LRSHIGVVPQDTVLFNDTIADNIRYG  151 (306)
T ss_dssp             EEEESSSCHHHHHHHHHHTT-SSCCSEEEEEETTEETT--SBCH------HH--HHHTEEEECSSCCCCSEEHHHHHHTT
T ss_pred             EEEECCCCchHHHHHHHHHc-CCCCCCcEEEECCEEcc--cCCH------HH--HhcceEEEecCCccCcccHHHHHHhh
Confidence            89999999999999999998 77888888888886543  1000      00  001122222221111           


Q ss_pred             ----chhHHHHHHHHH-----HhcCC-----------CCCCCC------------CCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          106 ----DRYVVQEVIKEM-----AKNRP-----------IDTKGK------------RGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       106 ----~~~~i~~~~~~~-----~~~~~-----------~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                          ....+.+.++..     ....+           ..+++.            .+++|+|+||+ ..|++.....+.+
T Consensus       152 ~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~  231 (306)
T 3nh6_A          152 RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA  231 (306)
T ss_dssp             STTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence                111122222211     11111           112211            36799999998 7899999988888


Q ss_pred             HHhhccCceeEEEEecCCCc
Q 018543          153 TMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       153 ~le~~~~~~~~Il~~~~~~~  172 (354)
                      .+.+...+..+|+++++.+.
T Consensus       232 ~l~~l~~~~Tvi~itH~l~~  251 (306)
T 3nh6_A          232 SLAKVCANRTTIVVAHRLST  251 (306)
T ss_dssp             HHHHHHTTSEEEEECCSHHH
T ss_pred             HHHHHcCCCEEEEEEcChHH
Confidence            88776556677777776543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.78  E-value=8.4e-09  Score=89.98  Aligned_cols=43  Identities=21%  Similarity=0.284  Sum_probs=34.5

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCC
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~  171 (354)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|++|++.+
T Consensus       173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~  218 (271)
T 2ixe_A          173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS  218 (271)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence            57899999998 78999999999999987643  566777776644

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.77  E-value=8.9e-09  Score=89.40  Aligned_cols=54  Identities=15%  Similarity=0.214  Sum_probs=38.1

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++..+..+++.+.+.. .+..+|++|++. .....+.+|+.+
T Consensus       170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~  225 (262)
T 1b0u_A          170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIF  225 (262)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEE
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEE
Confidence            57899999998 7899999999998886653 245566666554 334455666543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.77  E-value=3.6e-09  Score=95.29  Aligned_cols=132  Identities=14%  Similarity=0.275  Sum_probs=79.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh--------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY--------  108 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------  108 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++..+.  ....          ....+.+.+++.......        
T Consensus        29 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~~~g~~i~--~~~~----------~~r~ig~v~Q~~~l~~~ltv~enl~~   95 (348)
T 3d31_A           29 FVILGPTGAGKTLFLELIAG-FHVPDSGRILLDGKDVT--DLSP----------EKHDIAFVYQNYSLFPHMNVKKNLEF   95 (348)
T ss_dssp             EEEECCCTHHHHHHHHHHHT-SSCCSEEEEEETTEECT--TSCH----------HHHTCEEECTTCCCCTTSCHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHc-CCCCCCcEEEECCEECC--CCch----------hhCcEEEEecCcccCCCCCHHHHHHH
Confidence            88999999999999999998 67888888888876543  1000          001123333332222211        


Q ss_pred             -----------HHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-
Q 018543          109 -----------VVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-  158 (354)
Q Consensus       109 -----------~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-  158 (354)
                                 .+.++++.+.-.     .+..+|+            ..+++++++||+ ..|++.....++..+.+.. 
T Consensus        96 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~  175 (348)
T 3d31_A           96 GMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK  175 (348)
T ss_dssp             HHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence                       222333222110     1111221            257899999997 8899999998888886653 


Q ss_pred             -CceeEEEEecCCCcccHHHhhhcc
Q 018543          159 -ASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       159 -~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                       .+..+|++|++.+ ....+.+|+.
T Consensus       176 ~~g~tii~vTHd~~-~~~~~adri~  199 (348)
T 3d31_A          176 KNKLTVLHITHDQT-EARIMADRIA  199 (348)
T ss_dssp             HTTCEEEEEESCHH-HHHHHCSEEE
T ss_pred             hcCCEEEEEeCCHH-HHHHhCCEEE
Confidence             2456777766643 2345556653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.77  E-value=3e-09  Score=96.14  Aligned_cols=142  Identities=17%  Similarity=0.272  Sum_probs=77.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccccc----CCCccccccccccccCc----------eeeeCCCCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID----AGSRNIDLELTTLSSAN----------HVELSPSDA  102 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----------~i~~~~~~~  102 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++..+...    .+..+.  .+..+.+..          .+.+.....
T Consensus        34 ~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~~~~~~r--~ig~v~Q~~~l~~~ltv~eni~~~~~~~  110 (353)
T 1oxx_K           34 FGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPPEDR--KIGMVFQTWALYPNLTAFENIAFPLTNM  110 (353)
T ss_dssp             EEEECSCHHHHHHHHHHHHT-SSCCSEEEEEETTEEEEETTEESSCGGGS--CEEEEETTSCCCTTSCHHHHHHGGGTTS
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECcccccccCChhhC--CEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence            88999999999999999998 7788888888888765310    000000  111111110          011100000


Q ss_pred             CCcc---hhHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--
Q 018543          103 GFQD---RYVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--  159 (354)
Q Consensus       103 ~~~~---~~~i~~~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--  159 (354)
                      +...   ...+.++++.+.-     ..+..+|+            ..+++++++||+ ..|++.....+++.+.+...  
T Consensus       111 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~  190 (353)
T 1oxx_K          111 KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL  190 (353)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence            1110   1123333333211     11112221            257899999997 78998888888888865432  


Q ss_pred             ceeEEEEecCCCcccHHHhhhcc
Q 018543          160 SCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       160 ~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      +..+|++|++.+. ...+.+|+.
T Consensus       191 g~tvi~vTHd~~~-~~~~adri~  212 (353)
T 1oxx_K          191 GVTLLVVSHDPAD-IFAIADRVG  212 (353)
T ss_dssp             CCEEEEEESCHHH-HHHHCSEEE
T ss_pred             CCEEEEEeCCHHH-HHHhCCEEE
Confidence            4567777666433 345556654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.73  E-value=8.1e-09  Score=89.06  Aligned_cols=53  Identities=13%  Similarity=0.134  Sum_probs=37.7

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHH-hhhcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCL  182 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l-~sR~~  182 (354)
                      .+++++++||+ ..|++..+..+.+.+.+... +..+|++|++.+ ....+ .+|+.
T Consensus       160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~  215 (250)
T 2d2e_A          160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVH  215 (250)
T ss_dssp             HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEE
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEE
Confidence            36899999998 78999999999999977643 455666666543 33444 35553

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.72  E-value=2.3e-08  Score=86.99  Aligned_cols=141  Identities=21%  Similarity=0.223  Sum_probs=79.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC-----------ceeeeCCCCC-C-
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA-----------NHVELSPSDA-G-  103 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~~~~~~~-~-  103 (354)
                      +.|.||+|+||||+++++++ +..+..+.+.+++......  ..+.  .+..+.+.           +.+.+..... . 
T Consensus        36 ~~liG~nGsGKSTLl~~i~G-l~~p~~G~I~~~g~~~~~~--~~~~--~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~  110 (266)
T 2yz2_A           36 LLVAGNTGSGKSTLLQIVAG-LIEPTSGDVLYDGERKKGY--EIRR--NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD  110 (266)
T ss_dssp             EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCHH--HHGG--GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTT
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCCcEEEECCEECchH--Hhhh--hEEEEeccchhhcCCCcHHHHHHHHHHhcCCH
Confidence            88999999999999999998 6677888888877543200  0000  01111110           1111111100 0 


Q ss_pred             CcchhHHHHHHHHHHh-------cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-Ccee
Q 018543          104 FQDRYVVQEVIKEMAK-------NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCR  162 (354)
Q Consensus       104 ~~~~~~i~~~~~~~~~-------~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~  162 (354)
                      ......+.+.++.+.-       ..+..+|+            ..+++++++||+ ..|++.....+.+.+.+.. .+..
T Consensus       111 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~t  190 (266)
T 2yz2_A          111 RDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT  190 (266)
T ss_dssp             SCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCE
Confidence            0111234444443321       11112221            257899999998 7899999999999987653 3455


Q ss_pred             EEEEecCCCcccHHHhhhcce
Q 018543          163 LILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       163 ~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +|++|++.+. ...+.+|+.+
T Consensus       191 ii~vtHd~~~-~~~~~d~v~~  210 (266)
T 2yz2_A          191 VILISHDIET-VINHVDRVVV  210 (266)
T ss_dssp             EEEECSCCTT-TGGGCSEEEE
T ss_pred             EEEEeCCHHH-HHHhCCEEEE
Confidence            6666666543 3455566543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.69  E-value=7.8e-08  Score=83.32  Aligned_cols=129  Identities=17%  Similarity=0.274  Sum_probs=76.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceee-eCCCCCCC-----------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE-LSPSDAGF-----------  104 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~-----------  104 (354)
                      +.|.||+|+||||+++++++ +. ++.+.+.+++...... .. +           ..+. +.+++...           
T Consensus        33 ~~i~G~NGsGKSTLlk~l~G-l~-p~~G~I~~~g~~~~~~-~~-~-----------~~i~~~v~Q~~~l~~tv~enl~~~   97 (263)
T 2pjz_A           33 VIILGPNGSGKTTLLRAISG-LL-PYSGNIFINGMEVRKI-RN-Y-----------IRYSTNLPEAYEIGVTVNDIVYLY   97 (263)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SS-CCEEEEEETTEEGGGC-SC-C-----------TTEEECCGGGSCTTSBHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC-CC-CCCcEEEECCEECcch-HH-h-----------hheEEEeCCCCccCCcHHHHHHHh
Confidence            88999999999999999998 55 8888888877544310 00 0           1122 22211111           


Q ss_pred             -----cchhHHHHHHHHHHhc------CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhccCc
Q 018543          105 -----QDRYVVQEVIKEMAKN------RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus       105 -----~~~~~i~~~~~~~~~~------~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~  160 (354)
                           .....+.+.++.+.-.      .+..+|+            ..+++++++||+ ..|++.....+.+.+.+... 
T Consensus        98 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-  176 (263)
T 2pjz_A           98 EELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-  176 (263)
T ss_dssp             HHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-
T ss_pred             hhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-
Confidence                 0111233333332111      0111221            157899999998 78999999999999988754 


Q ss_pred             eeEEEEecCCCcccHHHhh-hcce
Q 018543          161 CRLILCCNSSSKVTEAIRS-RCLN  183 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~s-R~~~  183 (354)
                       .+|++|++.+ ....+.+ |+.+
T Consensus       177 -tviivtHd~~-~~~~~~d~~i~~  198 (263)
T 2pjz_A          177 -EGILVTHELD-MLNLYKEYKAYF  198 (263)
T ss_dssp             -EEEEEESCGG-GGGGCTTSEEEE
T ss_pred             -cEEEEEcCHH-HHHHhcCceEEE
Confidence             5666666653 3344555 5433

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.67  E-value=2.1e-08  Score=86.98  Aligned_cols=52  Identities=13%  Similarity=0.300  Sum_probs=38.0

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .+++++++||+ ..|++.....+.+.+.+...+..+|++|++.+.+ . ..+|+.
T Consensus       172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~-~-~~d~i~  224 (260)
T 2ghi_A          172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTI-S-SAESII  224 (260)
T ss_dssp             HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGS-T-TCSEEE
T ss_pred             cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-H-hCCEEE
Confidence            46799999998 7899999999999887765556677777765533 2 245543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.67  E-value=1.1e-08  Score=93.43  Aligned_cols=137  Identities=21%  Similarity=0.343  Sum_probs=80.0

Q ss_pred             hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC-----
Q 018543           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF-----  104 (354)
Q Consensus        30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----  104 (354)
                      ..|..  +.|.||+|+||||+++++++ +.. ..+.+.+++..+.  .....   ..     ...+.+.++++..     
T Consensus        45 ~~Ge~--~~llGpsGsGKSTLLr~iaG-l~~-~~G~I~i~G~~i~--~~~~~---~~-----rr~ig~v~Q~~~lf~~tv  110 (390)
T 3gd7_A           45 SPGQR--VGLLGRTGSGKSTLLSAFLR-LLN-TEGEIQIDGVSWD--SITLE---QW-----RKAFGVIPQKVFIFSGTF  110 (390)
T ss_dssp             CTTCE--EEEEESTTSSHHHHHHHHHT-CSE-EEEEEEESSCBTT--SSCHH---HH-----HHTEEEESCCCCCCSEEH
T ss_pred             cCCCE--EEEECCCCChHHHHHHHHhC-CCC-CCeEEEECCEECC--cCChH---HH-----hCCEEEEcCCcccCccCH
Confidence            34444  89999999999999999998 444 6678888776543  10000   00     0011222221111     


Q ss_pred             ---------cchhHHHHHHHH-----HHhcCCCC-----------CCC------------CCCceEEEEeCC-CcCCHHH
Q 018543          105 ---------QDRYVVQEVIKE-----MAKNRPID-----------TKG------------KRGFKVLVLNEV-DKLSREA  146 (354)
Q Consensus       105 ---------~~~~~i~~~~~~-----~~~~~~~~-----------~~~------------~~~~~viiiDE~-d~l~~~~  146 (354)
                               .....+.+.++.     +....+..           +|+            ..+++++++||+ ..|++..
T Consensus       111 ~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~  190 (390)
T 3gd7_A          111 RKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT  190 (390)
T ss_dssp             HHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHH
T ss_pred             HHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence                     111223333332     12222222           332            147899999997 7899999


Q ss_pred             HHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543          147 QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       147 ~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      ...+++.+.+......+|+++++.+.+  ...+|+.
T Consensus       191 ~~~l~~~l~~~~~~~tvi~vtHd~e~~--~~aDri~  224 (390)
T 3gd7_A          191 YQIIRRTLKQAFADCTVILCEARIEAM--LECDQFL  224 (390)
T ss_dssp             HHHHHHHHHTTTTTSCEEEECSSSGGG--TTCSEEE
T ss_pred             HHHHHHHHHHHhCCCEEEEEEcCHHHH--HhCCEEE
Confidence            999999997765567788887775432  2356653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.65  E-value=1.9e-08  Score=86.34  Aligned_cols=36  Identities=31%  Similarity=0.650  Sum_probs=31.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~   73 (354)
                      +.|.||+|+||||+++++++ +..+..+.+.+++...
T Consensus        31 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~   66 (243)
T 1mv5_A           31 IAFAGPSGGGKSTIFSLLER-FYQPTAGEITIDGQPI   66 (243)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSBSCEEETTEES
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEh
Confidence            89999999999999999998 6778888888887654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.64  E-value=3.8e-08  Score=95.40  Aligned_cols=145  Identities=14%  Similarity=0.260  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cccccccccCc------
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DLELTTLSSAN------   93 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------   93 (354)
                      +.+.+.-.++.|+.  +.+.||+|+||||+++.+++ ++.++.+.+.+++.+..  ...... ...+..+.+..      
T Consensus       358 ~l~~i~l~i~~G~~--~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~~~--~~~~~~~~~~i~~v~Q~~~l~~~t  432 (582)
T 3b5x_A          358 ALSHVSFSIPQGKT--VALVGRSGSGKSTIANLFTR-FYDVDSGSICLDGHDVR--DYKLTNLRRHFALVSQNVHLFNDT  432 (582)
T ss_pred             ccccceEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCCEEEECCEEhh--hCCHHHHhcCeEEEcCCCcccccc
Confidence            33444444444544  89999999999999999998 67888888888886543  100000 00111111111      


Q ss_pred             ---eeeeCCCCCCCcchhHHHHHHHHH-----HhcCC-----------CCCCC------------CCCceEEEEeCC-Cc
Q 018543           94 ---HVELSPSDAGFQDRYVVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLNEV-DK  141 (354)
Q Consensus        94 ---~i~~~~~~~~~~~~~~i~~~~~~~-----~~~~~-----------~~~~~------------~~~~~viiiDE~-d~  141 (354)
                         .+.+... .. .....+.+.++.+     ....|           ..+|+            ..+++++++||+ ..
T Consensus       433 v~eni~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~  510 (582)
T 3b5x_A          433 IANNIAYAAE-GE-YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA  510 (582)
T ss_pred             HHHHHhccCC-CC-CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence               0111000 00 1112233333221     11111           11221            157899999998 78


Q ss_pred             CCHHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543          142 LSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       142 l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~  172 (354)
                      +++.....+.+.+.+...+..+|+++++.+.
T Consensus       511 LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~  541 (582)
T 3b5x_A          511 LDTESERAIQAALDELQKNKTVLVIAHRLST  541 (582)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence            9999999999988776556677888877653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.63  E-value=6.1e-08  Score=83.64  Aligned_cols=55  Identities=15%  Similarity=0.222  Sum_probs=38.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC--ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++..+..+.+.+.+...  +..+|+++++. .....+.+|+.++
T Consensus       145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l  202 (253)
T 2nq2_C          145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLL  202 (253)
T ss_dssp             TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEE
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEE
Confidence            57899999998 78999999999998876532  45566666554 3334455555443

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.62  E-value=2.8e-08  Score=84.89  Aligned_cols=53  Identities=8%  Similarity=0.043  Sum_probs=37.8

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHh---hccCceeEEEEecCCCcccHHHhhhcce
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTME---KYSASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le---~~~~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+++++++||+ ..|++.....+.+.+.   +...+..+|++|++.+.+ . ..+|+.+
T Consensus       144 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~-~~d~v~~  200 (237)
T 2cbz_A          144 SNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-P-QVDVIIV  200 (237)
T ss_dssp             HCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-G-GSSEEEE
T ss_pred             cCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-H-hCCEEEE
Confidence            36799999998 7899999999999883   333456677777776543 3 3555533

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.58  E-value=1.8e-08  Score=97.55  Aligned_cols=126  Identities=21%  Similarity=0.286  Sum_probs=75.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc-----------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ-----------  105 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------  105 (354)
                      +.+.||+|+||||+++.+++ ++.+..+.+.+++.+..  ....        ......+.+.+++....           
T Consensus       370 ~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~~~--~~~~--------~~~r~~i~~v~Q~~~l~~~tv~eni~~~  438 (578)
T 4a82_A          370 VAFVGMSGGGKSTLINLIPR-FYDVTSGQILIDGHNIK--DFLT--------GSLRNQIGLVQQDNILFSDTVKENILLG  438 (578)
T ss_dssp             EEEECSTTSSHHHHHTTTTT-SSCCSEEEEEETTEEGG--GSCH--------HHHHHTEEEECSSCCCCSSBHHHHHGGG
T ss_pred             EEEECCCCChHHHHHHHHhc-CCCCCCcEEEECCEEhh--hCCH--------HHHhhheEEEeCCCccCcccHHHHHhcC
Confidence            89999999999999999998 67888888888886544  1000        00001122222221111           


Q ss_pred             ----chhHHHHHHHHH-----HhcCC-----------CCCCCC------------CCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          106 ----DRYVVQEVIKEM-----AKNRP-----------IDTKGK------------RGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       106 ----~~~~i~~~~~~~-----~~~~~-----------~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                          ....+.+..+..     ....|           ..+|+.            .+++++++||+ ..+++.....+.+
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~  518 (578)
T 4a82_A          439 RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE  518 (578)
T ss_dssp             CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence                111122222111     11111           012211            36899999998 7899998888888


Q ss_pred             HHhhccCceeEEEEecCCCcc
Q 018543          153 TMEKYSASCRLILCCNSSSKV  173 (354)
Q Consensus       153 ~le~~~~~~~~Il~~~~~~~l  173 (354)
                      .+.+...+..+|+++++.+.+
T Consensus       519 ~l~~~~~~~t~i~itH~l~~~  539 (578)
T 4a82_A          519 ALDVLSKDRTTLIVAHRLSTI  539 (578)
T ss_dssp             HHHHHTTTSEEEEECSSGGGT
T ss_pred             HHHHHcCCCEEEEEecCHHHH
Confidence            887765666778888877654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.58  E-value=6.8e-08  Score=82.08  Aligned_cols=43  Identities=14%  Similarity=0.136  Sum_probs=32.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHH-HhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRT-MEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~-le~~~~~~~~Il~~~~~~  171 (354)
                      .+++++++||+ ..|++.....+.+. +.+...+..+|+++++.+
T Consensus       147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~  191 (229)
T 2pze_A          147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME  191 (229)
T ss_dssp             SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred             cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence            46799999998 78999999999986 454444556777766643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.58  E-value=2.9e-08  Score=96.44  Aligned_cols=126  Identities=21%  Similarity=0.308  Sum_probs=75.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcc----------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD----------  106 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------  106 (354)
                      +.+.||+|+||||+++.+++ ++.++.+.+.+++.+..  ....        ..-...+.+.+++.....          
T Consensus       384 ~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~i~--~~~~--------~~~r~~i~~v~Q~~~lf~~tv~eni~~~  452 (598)
T 3qf4_B          384 VALVGPTGSGKTTIVNLLMR-FYDVDRGQILVDGIDIR--KIKR--------SSLRSSIGIVLQDTILFSTTVKENLKYG  452 (598)
T ss_dssp             EEEECCTTSSTTHHHHHHTT-SSCCSEEEEEETTEEGG--GSCH--------HHHHHHEEEECTTCCCCSSBHHHHHHSS
T ss_pred             EEEECCCCCcHHHHHHHHhc-CcCCCCeEEEECCEEhh--hCCH--------HHHHhceEEEeCCCccccccHHHHHhcC
Confidence            89999999999999999998 77888888888886554  1000        000011222222221111          


Q ss_pred             -----hhHHHHHHH-----HHHhcCC-----------CCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          107 -----RYVVQEVIK-----EMAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       107 -----~~~i~~~~~-----~~~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                           ...+.+.++     .+....+           ..+++            ..+++++++||+ ..+++.....+.+
T Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~  532 (598)
T 3qf4_B          453 NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA  532 (598)
T ss_dssp             STTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence                 011111111     0111111           11221            147899999998 7899999888888


Q ss_pred             HHhhccCceeEEEEecCCCcc
Q 018543          153 TMEKYSASCRLILCCNSSSKV  173 (354)
Q Consensus       153 ~le~~~~~~~~Il~~~~~~~l  173 (354)
                      .+.+...+..+|+++++.+.+
T Consensus       533 ~l~~~~~~~t~i~itH~l~~~  553 (598)
T 3qf4_B          533 AMWKLMEGKTSIIIAHRLNTI  553 (598)
T ss_dssp             HHHHHHTTSEEEEESCCTTHH
T ss_pred             HHHHHcCCCEEEEEecCHHHH
Confidence            887765667788888887643

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.58  E-value=5.2e-08  Score=84.79  Aligned_cols=53  Identities=11%  Similarity=0.132  Sum_probs=37.5

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHH-hhhcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCL  182 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l-~sR~~  182 (354)
                      .+++++++||+ ..|++.....+.+.+.+... +..+|++|++.+ ....+ .+|+.
T Consensus       181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~  236 (267)
T 2zu0_C          181 LEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVH  236 (267)
T ss_dssp             HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEE
T ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEE
Confidence            37899999998 78999999999999987643 455666665543 33333 45543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.56  E-value=4.5e-08  Score=94.89  Aligned_cols=126  Identities=17%  Similarity=0.311  Sum_probs=75.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC------------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF------------  104 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------  104 (354)
                      +.+.||+|+||||+++.+++ ++.++.+.+.+++.+..  .....   .+     ...+.+.+++...            
T Consensus       372 ~~ivG~sGsGKSTLl~~l~g-~~~p~~G~i~~~g~~~~--~~~~~---~~-----~~~i~~v~Q~~~l~~~tv~eni~~~  440 (582)
T 3b60_A          372 VALVGRSGSGKSTIASLITR-FYDIDEGHILMDGHDLR--EYTLA---SL-----RNQVALVSQNVHLFNDTVANNIAYA  440 (582)
T ss_dssp             EEEEECTTSSHHHHHHHHTT-TTCCSEEEEEETTEETT--TBCHH---HH-----HHTEEEECSSCCCCSSBHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHhh-ccCCCCCeEEECCEEcc--ccCHH---HH-----HhhCeEEccCCcCCCCCHHHHHhcc
Confidence            89999999999999999998 67888888888876543  10000   00     0011122211111            


Q ss_pred             ----cchhHHHHHHHHH-----HhcCC-----------CCCCCC------------CCceEEEEeCC-CcCCHHHHHHHH
Q 018543          105 ----QDRYVVQEVIKEM-----AKNRP-----------IDTKGK------------RGFKVLVLNEV-DKLSREAQHSLR  151 (354)
Q Consensus       105 ----~~~~~i~~~~~~~-----~~~~~-----------~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll  151 (354)
                          .....+.+.++.+     ....|           ..+|+.            .+++++++||+ ..|++.....+.
T Consensus       441 ~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~  520 (582)
T 3b60_A          441 RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ  520 (582)
T ss_dssp             TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHH
Confidence                1111222222211     11111           112211            46899999998 789999999898


Q ss_pred             HHHhhccCceeEEEEecCCCcc
Q 018543          152 RTMEKYSASCRLILCCNSSSKV  173 (354)
Q Consensus       152 ~~le~~~~~~~~Il~~~~~~~l  173 (354)
                      +.+.+...+..+|+++++.+.+
T Consensus       521 ~~l~~~~~~~tvi~itH~~~~~  542 (582)
T 3b60_A          521 AALDELQKNRTSLVIAHRLSTI  542 (582)
T ss_dssp             HHHHHHHTTSEEEEECSCGGGT
T ss_pred             HHHHHHhCCCEEEEEeccHHHH
Confidence            8887765566778888776543

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.55  E-value=2.5e-08  Score=96.69  Aligned_cols=125  Identities=18%  Similarity=0.299  Sum_probs=75.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc-----------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ-----------  105 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------  105 (354)
                      +.+.||+|+||||+++.+++ ++.+..+.+.+++.+..  ...        ...-...+.+.+++....           
T Consensus       372 ~~ivG~sGsGKSTll~~l~g-~~~~~~G~i~i~g~~i~--~~~--------~~~~r~~i~~v~Q~~~lf~~tv~eni~~~  440 (587)
T 3qf4_A          372 VAVLGETGSGKSTLMNLIPR-LIDPERGRVEVDELDVR--TVK--------LKDLRGHISAVPQETVLFSGTIKENLKWG  440 (587)
T ss_dssp             EEEECSSSSSHHHHHHTTTT-SSCCSEEEEEESSSBGG--GBC--------HHHHHHHEEEECSSCCCCSEEHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHhC-CccCCCcEEEECCEEcc--cCC--------HHHHHhheEEECCCCcCcCccHHHHHhcc
Confidence            89999999999999999998 67888888888887554  100        000001122222221111           


Q ss_pred             ----chhHHHHHHHH------HHhcC----------CCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          106 ----DRYVVQEVIKE------MAKNR----------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       106 ----~~~~i~~~~~~------~~~~~----------~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                          ....+.+..+.      +...+          +..+++            ..+++++++||+ ..+++.....+.+
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~  520 (587)
T 3qf4_A          441 REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD  520 (587)
T ss_dssp             CSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence                11112222211      11100          011221            147899999998 7899999999999


Q ss_pred             HHhhccCceeEEEEecCCCc
Q 018543          153 TMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       153 ~le~~~~~~~~Il~~~~~~~  172 (354)
                      .+.+...+..+|++|++.+.
T Consensus       521 ~l~~~~~~~tvi~itH~l~~  540 (587)
T 3qf4_A          521 GLKRYTKGCTTFIITQKIPT  540 (587)
T ss_dssp             HHHHHSTTCEEEEEESCHHH
T ss_pred             HHHHhCCCCEEEEEecChHH
Confidence            88776667778888887654

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.53  E-value=4.3e-06  Score=92.50  Aligned_cols=166  Identities=17%  Similarity=0.293  Sum_probs=102.2

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCC
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (354)
                      ....+..++..+..  .++.||+|||||++++.+|+.+ +..                               .+.++++
T Consensus       634 ~~~tl~~Al~~~~~--~~l~GpaGtGKTe~vk~LA~~l-g~~-------------------------------~v~~nc~  679 (2695)
T 4akg_A          634 GFATLTDSLHQKYG--GCFFGPAGTGKTETVKAFGQNL-GRV-------------------------------VVVFNCD  679 (2695)
T ss_dssp             HHHHHHHHHHTTCE--EEEECCTTSCHHHHHHHHHHTT-TCC-------------------------------CEEEETT
T ss_pred             HHHHHHHHHHhCCC--CcccCCCCCCcHHHHHHHHHHh-CCc-------------------------------EEEEECC
Confidence            34455555555543  7899999999999999999965 211                               1222222


Q ss_pred             CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHH-------HHHHhhc-------------cCc
Q 018543          101 DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSL-------RRTMEKY-------------SAS  160 (354)
Q Consensus       101 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~L-------l~~le~~-------------~~~  160 (354)
                      +. . +...+..++..+....          ..+++||+++++++...++       ...+.+.             .++
T Consensus       680 e~-l-d~~~lg~~~~g~~~~G----------aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~  747 (2695)
T 4akg_A          680 DS-F-DYQVLSRLLVGITQIG----------AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPH  747 (2695)
T ss_dssp             SS-C-CHHHHHHHHHHHHHHT----------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTT
T ss_pred             CC-C-ChhHhhHHHHHHHhcC----------CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCC
Confidence            21 1 1122344444444432          5799999999999887776       3333221             133


Q ss_pred             eeEEEEec----CCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------Hc------CC
Q 018543          161 CRLILCCN----SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE-------KS------NR  223 (354)
Q Consensus       161 ~~~Il~~~----~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~-------~s------~g  223 (354)
                      +.++++.|    ....+++.+++||..+.+..|+.+.+.+++-.   ..|+...+.....++.       ..      +-
T Consensus       748 ~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydf  824 (2695)
T 4akg_A          748 TAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHF  824 (2695)
T ss_dssp             CEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCC
T ss_pred             ceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccc
Confidence            44555555    23479999999999999999999988888653   3465444444443333       11      23


Q ss_pred             CHHHHHHHHHHH
Q 018543          224 SLRRAILSFETC  235 (354)
Q Consensus       224 d~R~ai~~L~~~  235 (354)
                      .+|.....|..+
T Consensus       825 glRalksvL~~a  836 (2695)
T 4akg_A          825 GLRTLKGVLRNC  836 (2695)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            577776666544

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.48  E-value=4.2e-08  Score=85.83  Aligned_cols=36  Identities=28%  Similarity=0.304  Sum_probs=30.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~   73 (354)
                      +.|.||+|+||||+++++++ +..++.+.+.+++..+
T Consensus        50 ~~liG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~   85 (279)
T 2ihy_A           50 WILYGLNGAGKTTLLNILNA-YEPATSGTVNLFGKMP   85 (279)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTBCC
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCCeEEEECCEEc
Confidence            88999999999999999998 6677888888877543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.43  E-value=3.6e-07  Score=80.31  Aligned_cols=43  Identities=14%  Similarity=0.117  Sum_probs=32.3

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHH-hhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTM-EKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~l-e~~~~~~~~Il~~~~~~  171 (354)
                      .+++++++||+ ..|++..+..+.+.+ .+...+..+|+++++.+
T Consensus       176 ~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~  220 (290)
T 2bbs_A          176 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME  220 (290)
T ss_dssp             SCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred             CCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence            46799999998 789999999999864 44444556777776653

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=98.40  E-value=3.1e-07  Score=75.26  Aligned_cols=50  Identities=8%  Similarity=0.089  Sum_probs=36.0

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC------cccHHHhhhcc
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS------KVTEAIRSRCL  182 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~------~l~~~l~sR~~  182 (354)
                      ++.+|+|||++.++++..+.|....+.   +..+|++..+.+      ...+.+.+++.
T Consensus        76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad  131 (184)
T 2orw_A           76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLAD  131 (184)
T ss_dssp             TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCS
T ss_pred             CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhh
Confidence            568999999999988777777666664   466777666443      45566777764

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.39  E-value=1.9e-06  Score=95.85  Aligned_cols=75  Identities=13%  Similarity=0.247  Sum_probs=56.9

Q ss_pred             CCceEEEEeCCCcCCH------HHHHHHHHHHhhc------------cCceeEEEEecCC-----CcccHHHhhhcceee
Q 018543          129 RGFKVLVLNEVDKLSR------EAQHSLRRTMEKY------------SASCRLILCCNSS-----SKVTEAIRSRCLNIR  185 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~------~~~~~Ll~~le~~------------~~~~~~Il~~~~~-----~~l~~~l~sR~~~i~  185 (354)
                      +++-|++|||++.-..      ...+.|+..|+..            ..++.+|.++|.+     ..+.+.+.+|+.++.
T Consensus      1373 Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~ 1452 (3245)
T 3vkg_A         1373 GKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILL 1452 (3245)
T ss_dssp             TCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEE
T ss_pred             CceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEE
Confidence            5567999999985543      2556677777641            1345677777766     358999999999999


Q ss_pred             ecCCCHHHHHHHHHHHHH
Q 018543          186 INSPTEEQIVKVLEFIAK  203 (354)
Q Consensus       186 ~~~~~~~~~~~~L~~~~~  203 (354)
                      ++.|+.+++..|...+..
T Consensus      1453 i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A         1453 VDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp             CCCCCHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHH
Confidence            999999999999877654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.36  E-value=5.5e-07  Score=86.01  Aligned_cols=56  Identities=11%  Similarity=0.214  Sum_probs=39.6

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhcceee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNIR  185 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i~  185 (354)
                      .+++++++||+ ..|+...+..+.+.+.+..  .+..+|+++++. .....+.+|+.++.
T Consensus       402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~  460 (538)
T 3ozx_A          402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFK  460 (538)
T ss_dssp             SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEE
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEe
Confidence            46799999998 7899999998888887653  245556665554 44456667765544

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.35  E-value=3.8e-06  Score=68.91  Aligned_cols=69  Identities=17%  Similarity=0.319  Sum_probs=42.9

Q ss_pred             CCCceEEEEeCCCcC---CHHHHHHHHHHHhhccCceeEE--EEe-cCC-CcccHHHhhh--cceeeecCCCHHHHHHHH
Q 018543          128 KRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLI--LCC-NSS-SKVTEAIRSR--CLNIRINSPTEEQIVKVL  198 (354)
Q Consensus       128 ~~~~~viiiDE~d~l---~~~~~~~Ll~~le~~~~~~~~I--l~~-~~~-~~l~~~l~sR--~~~i~~~~~~~~~~~~~L  198 (354)
                      ..+++++|+||++.+   +....+.+.++++.+.  +.++  ++. ++. ..+.+.++.+  +.++.+.+-+.+.+...+
T Consensus       103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~--~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i  180 (189)
T 2i3b_A          103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG--TIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI  180 (189)
T ss_dssp             SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS--CCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHH
T ss_pred             ccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC--cEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHH
Confidence            356789999997655   5567778888887542  2332  222 222 2566777664  567888776655555444

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=98.35  E-value=6.1e-07  Score=74.25  Aligned_cols=60  Identities=8%  Similarity=0.130  Sum_probs=41.9

Q ss_pred             CceEEEEeCCCcC--CH-HH--HHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcc-eeeecCC
Q 018543          130 GFKVLVLNEVDKL--SR-EA--QHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCL-NIRINSP  189 (354)
Q Consensus       130 ~~~viiiDE~d~l--~~-~~--~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~  189 (354)
                      +..||||||++.+  +. +.  ...++..++... ....+|++++.+..+..++++|+. .+++.++
T Consensus        87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~  153 (199)
T 2r2a_A           87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN  153 (199)
T ss_dssp             TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred             CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence            4579999999988  22 11  113555555433 345789999998899999999985 5777663

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.35  E-value=1.2e-05  Score=78.01  Aligned_cols=194  Identities=13%  Similarity=0.137  Sum_probs=98.8

Q ss_pred             CCCCCCCcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHh---cCC-CCcccccccccccccCCCcc
Q 018543            8 RPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQV---FGP-GAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         8 rP~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l---~~~-~~~~~~~~~~~~~~~~~~~~   81 (354)
                      -|.....++|.+.....|..++..  +..+.+.++||+|+||||+|..+++..   ... ..+...++....      ..
T Consensus       119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~------~~  192 (591)
T 1z6t_A          119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ------DK  192 (591)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC------CH
T ss_pred             CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC------ch
Confidence            366678899999999999999874  233349999999999999999886421   000 000011110000      00


Q ss_pred             cccccccccc-Cceeee--CCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc
Q 018543           82 IDLELTTLSS-ANHVEL--SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (354)
Q Consensus        82 ~~~~~~~~~~-~~~i~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~  158 (354)
                      . .-...+.. ...+..  ............+.+.+......       ..++-+||||+++..  .       .++..+
T Consensus       193 ~-~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~LLVLDdv~~~--~-------~l~~l~  255 (591)
T 1z6t_A          193 S-GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR-------KHPRSLLILDDVWDS--W-------VLKAFD  255 (591)
T ss_dssp             H-HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH-------TCTTCEEEEEEECCH--H-------HHHTTC
T ss_pred             H-HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc-------CCCCeEEEEeCCCCH--H-------HHHHhc
Confidence            0 00000000 000000  00000111111122222221111       113469999999742  1       223335


Q ss_pred             CceeEEEEecCCCcccHHHhhhcceeee---cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 018543          159 ASCRLILCCNSSSKVTEAIRSRCLNIRI---NSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA  228 (354)
Q Consensus       159 ~~~~~Il~~~~~~~l~~~l~sR~~~i~~---~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~a  228 (354)
                      .++.+|++|.+..- .....  ...+.+   .+++.++..+.+...+... ..-.++....|++.++|.+--.
T Consensus       256 ~~~~ilvTsR~~~~-~~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal  324 (591)
T 1z6t_A          256 SQCQILLTTRDKSV-TDSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVV  324 (591)
T ss_dssp             SSCEEEEEESCGGG-GTTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHH
T ss_pred             CCCeEEEECCCcHH-HHhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHH
Confidence            66778887766431 11111  223333   5899999999998776321 1111457888999999986443

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.33  E-value=2.7e-06  Score=76.26  Aligned_cols=48  Identities=19%  Similarity=0.334  Sum_probs=38.0

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      +.+.+...+..|..  +++.||+|+||||+++++++ +..+..+.+.+++.
T Consensus       160 ~l~~l~~~i~~g~~--v~i~G~~GsGKTTll~~l~g-~~~~~~g~i~i~~~  207 (330)
T 2pt7_A          160 AISAIKDGIAIGKN--VIVCGGTGSGKTTYIKSIME-FIPKEERIISIEDT  207 (330)
T ss_dssp             HHHHHHHHHHHTCC--EEEEESTTSCHHHHHHHGGG-GSCTTSCEEEEESS
T ss_pred             HHhhhhhhccCCCE--EEEECCCCCCHHHHHHHHhC-CCcCCCcEEEECCe
Confidence            56667777777775  99999999999999999998 55666666666653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.31  E-value=9.3e-07  Score=84.56  Aligned_cols=55  Identities=13%  Similarity=0.212  Sum_probs=38.9

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+...+..+.+.+.+..  .+..+|+++++. .....+.+|+.++
T Consensus       418 ~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl  475 (538)
T 1yqt_A          418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVF  475 (538)
T ss_dssp             SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEE
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence            47899999998 7899999999999887653  245566665553 4445566665544

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.31  E-value=2.3e-07  Score=97.75  Aligned_cols=127  Identities=19%  Similarity=0.328  Sum_probs=80.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc-----------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ-----------  105 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------  105 (354)
                      +-|+||+|+||||+++.+.+ ++.+..|.+.+|+.+..          ++....-...+.+.++++-..           
T Consensus      1108 vaIVG~SGsGKSTL~~lL~r-l~~p~~G~I~iDG~di~----------~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~g 1176 (1321)
T 4f4c_A         1108 LALVGPSGCGKSTVVALLER-FYDTLGGEIFIDGSEIK----------TLNPEHTRSQIAIVSQEPTLFDCSIAENIIYG 1176 (1321)
T ss_dssp             EEEECSTTSSTTSHHHHHTT-SSCCSSSEEEETTEETT----------TBCHHHHHTTEEEECSSCCCCSEEHHHHHSSS
T ss_pred             EEEECCCCChHHHHHHHHhc-CccCCCCEEEECCEEhh----------hCCHHHHHhheEEECCCCEeeCccHHHHHhcc
Confidence            89999999999999999998 78899999999987654          111111111233333332111           


Q ss_pred             ------chhHHHHHHHHH-----HhcCCC-----------CCCCC------------CCceEEEEeCC-CcCCHHHHHHH
Q 018543          106 ------DRYVVQEVIKEM-----AKNRPI-----------DTKGK------------RGFKVLVLNEV-DKLSREAQHSL  150 (354)
Q Consensus       106 ------~~~~i~~~~~~~-----~~~~~~-----------~~~~~------------~~~~viiiDE~-d~l~~~~~~~L  150 (354)
                            ....+.+.++..     -...|-           ++|+.            .+++|+++||+ -.++.+....+
T Consensus      1177 ld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~I 1256 (1321)
T 4f4c_A         1177 LDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV 1256 (1321)
T ss_dssp             SCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHH
Confidence                  111233333221     111111           11110            46899999998 67888888888


Q ss_pred             HHHHhhccCceeEEEEecCCCccc
Q 018543          151 RRTMEKYSASCRLILCCNSSSKVT  174 (354)
Q Consensus       151 l~~le~~~~~~~~Il~~~~~~~l~  174 (354)
                      .+.+++...++.+|++++..+.+.
T Consensus      1257 q~~l~~~~~~~TvI~IAHRLsTi~ 1280 (1321)
T 4f4c_A         1257 QEALDRAREGRTCIVIAHRLNTVM 1280 (1321)
T ss_dssp             HHHHTTTSSSSEEEEECSSSSTTT
T ss_pred             HHHHHHHcCCCEEEEeccCHHHHH
Confidence            899988777788999999887654

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=98.29  E-value=3.8e-06  Score=70.60  Aligned_cols=111  Identities=13%  Similarity=0.114  Sum_probs=56.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~  116 (354)
                      ++++||+|+||||++..++..+...+.....+......      + . . ..+  ..++.+........   ...++...
T Consensus        15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~------r-~-~-~~i--~srlG~~~~~~~~~---~~~~i~~~   80 (223)
T 2b8t_A           15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT------R-S-I-RNI--QSRTGTSLPSVEVE---SAPEILNY   80 (223)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG------G-G-C-SSC--CCCCCCSSCCEEES---STHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc------h-H-H-HHH--HHhcCCCccccccC---CHHHHHHH
Confidence            89999999999999988887765433222111110000      0 0 0 000  01111111110111   12334443


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC
Q 018543          117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (354)
Q Consensus       117 ~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~  169 (354)
                      +.....     ..++.+|+|||++.++.+....+.. +.+.  +..+|++..+
T Consensus        81 i~~~~~-----~~~~dvViIDEaQ~l~~~~ve~l~~-L~~~--gi~Vil~Gl~  125 (223)
T 2b8t_A           81 IMSNSF-----NDETKVIGIDEVQFFDDRICEVANI-LAEN--GFVVIISGLD  125 (223)
T ss_dssp             HHSTTS-----CTTCCEEEECSGGGSCTHHHHHHHH-HHHT--TCEEEEECCS
T ss_pred             HHHHhh-----CCCCCEEEEecCccCcHHHHHHHHH-HHhC--CCeEEEEecc
Confidence            333211     2456899999999998776555544 3332  5777777763

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.29  E-value=9.7e-07  Score=85.46  Aligned_cols=56  Identities=13%  Similarity=0.211  Sum_probs=39.4

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhcceee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNIR  185 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i~  185 (354)
                      .+++++++||+ ..|+...+..+.+.+.+..  .+..+|+++++. .....+.+|..++.
T Consensus       488 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~  546 (607)
T 3bk7_A          488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFE  546 (607)
T ss_dssp             SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEE
T ss_pred             hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc
Confidence            57899999998 7899999999999887653  345566665553 44455666655443

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.27  E-value=3.1e-06  Score=73.25  Aligned_cols=56  Identities=20%  Similarity=0.274  Sum_probs=34.9

Q ss_pred             CCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCC-Cccccccc
Q 018543            9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG-AEKVKVEN   70 (354)
Q Consensus         9 P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~   70 (354)
                      +.+++++--. .+.+.+.  +..|.  .+++.||+|+||||+++++++.+ .+. .+.+.+++
T Consensus         5 ~~~l~~l~~~-~vl~~i~--i~~g~--~v~i~Gp~GsGKSTll~~l~g~~-~~~~~G~I~~~g   61 (261)
T 2eyu_A            5 IPEFKKLGLP-DKVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYI-NQTKSYHIITIE   61 (261)
T ss_dssp             -CCGGGSSCC-THHHHGG--GCSSE--EEEEECSTTCSHHHHHHHHHHHH-HHHCCCEEEEEE
T ss_pred             CCChHHCCCH-HHHHHHh--hCCCC--EEEEECCCCccHHHHHHHHHHhC-CCCCCCEEEEcC
Confidence            4456665433 3444443  33333  39999999999999999999865 332 45554444

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=98.26  E-value=8.2e-06  Score=78.52  Aligned_cols=186  Identities=15%  Similarity=0.158  Sum_probs=92.7

Q ss_pred             ccCHHHHHHHHHHHhcC---CCCeEEEeCCCCCcHHHHHHHHHHH---hcCCCCcccccccccccccCCCcccccccccc
Q 018543           16 IVHQDIAQNLKKLVTEQ---DCPHLLFYGPPGSGKKTLIMALLRQ---VFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (354)
Q Consensus        16 ~g~~~~~~~l~~~l~~~---~~~~~ll~Gp~G~GKTtla~~la~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (354)
                      +|.+..++.|..++..+   ....+.++|+.|+||||+|+.+++.   -...     .+++..|.  +-+.........+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~-----~F~~~~wv--~vs~~~~~~~~~~  203 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI-----NYDSIVWL--KDSGTAPKSTFDL  203 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT-----TBSEEEEE--ECCCCSTTHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhc-----cCCcEEEE--EECCCCCCCHHHH
Confidence            49999999998888654   2334899999999999999999862   1111     12222221  0000000000000


Q ss_pred             cc--CceeeeC-----CCCCCCcchhHHHHHHHHHHhcCCCCCCCCCC-ceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543           90 SS--ANHVELS-----PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (354)
Q Consensus        90 ~~--~~~i~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~  161 (354)
                      ..  ...+...     ..+....+...+...+....         .++ +-+||+|+++...  .. .+.    .. .++
T Consensus       204 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L---------~~~kr~LlVLDdv~~~~--~~-~~~----~~-~gs  266 (549)
T 2a5y_B          204 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL---------IDRPNTLFVFDDVVQEE--TI-RWA----QE-LRL  266 (549)
T ss_dssp             HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH---------TTSTTEEEEEEEECCHH--HH-HHH----HH-TTC
T ss_pred             HHHHHHHHhcCcccccccccccccHHHHHHHHHHHH---------cCCCcEEEEEECCCCch--hh-ccc----cc-CCC
Confidence            00  0000000     00000000001111111111         122 5799999998632  11 111    11 457


Q ss_pred             eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Q 018543          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL-QLPSGFATRLAEKSNRSLR  226 (354)
Q Consensus       162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~-~i~~~~l~~i~~~s~gd~R  226 (354)
                      ++|+||.+.. +..........+.+++++.++-...+.+.+..... .-.++....|++.++|.+-
T Consensus       267 ~ilvTTR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPL  331 (549)
T 2a5y_B          267 RCLVTTRDVE-ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPA  331 (549)
T ss_dssp             EEEEEESBGG-GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHH
T ss_pred             EEEEEcCCHH-HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChH
Confidence            7777776532 22211112246899999999999998876421111 1113467888889888763

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.26  E-value=2.2e-06  Score=71.52  Aligned_cols=49  Identities=33%  Similarity=0.457  Sum_probs=34.8

Q ss_pred             ccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccc
Q 018543            6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKV   66 (354)
Q Consensus         6 kyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~   66 (354)
                      ..+|+++.    +..+.+.    +..|..  +.|.||+|+||||++++++..  .++.+.+
T Consensus         4 ~i~pk~~g----~~~~l~~----i~~Ge~--~~liG~nGsGKSTLl~~l~Gl--~p~~G~I   52 (208)
T 3b85_A            4 VIRPKTLG----QKHYVDA----IDTNTI--VFGLGPAGSGKTYLAMAKAVQ--ALQSKQV   52 (208)
T ss_dssp             CCCCCSHH----HHHHHHH----HHHCSE--EEEECCTTSSTTHHHHHHHHH--HHHTTSC
T ss_pred             ccccCCHh----HHHHHHh----ccCCCE--EEEECCCCCCHHHHHHHHhcC--CCcCCee
Confidence            46777763    3333333    355655  889999999999999999984  5555555

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.25  E-value=1.7e-06  Score=82.83  Aligned_cols=55  Identities=11%  Similarity=0.149  Sum_probs=39.7

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++..+..+++.+++.. .+..+|+++++.+ ....+.+|+.++
T Consensus       175 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl  231 (538)
T 1yqt_A          175 RNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVV  231 (538)
T ss_dssp             SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            47899999998 7899999998888887653 2455666666543 555666776544

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.23  E-value=4.4e-07  Score=95.42  Aligned_cols=126  Identities=18%  Similarity=0.300  Sum_probs=74.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcc----------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD----------  106 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------  106 (354)
                      +.+.||+|+||||+++.+++ ++.+..+.+.+++.+..  .        .....-...+.+.+++.....          
T Consensus       419 ~~ivG~sGsGKSTl~~ll~g-~~~~~~G~i~i~g~~i~--~--------~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g  487 (1284)
T 3g5u_A          419 VALVGNSGCGKSTTVQLMQR-LYDPLDGMVSIDGQDIR--T--------INVRYLREIIGVVSQEPVLFATTIAENIRYG  487 (1284)
T ss_dssp             EEEECCSSSSHHHHHHHTTT-SSCCSEEEEEETTEEGG--G--------SCHHHHHHHEEEECSSCCCCSSCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEHH--h--------CCHHHHHhheEEEcCCCccCCccHHHHHhcC
Confidence            89999999999999999998 67788888888886544  1        000000111333333321111          


Q ss_pred             -----hhHHHHHHHH------HHhcCC----------CCCCCC------------CCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          107 -----RYVVQEVIKE------MAKNRP----------IDTKGK------------RGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       107 -----~~~i~~~~~~------~~~~~~----------~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                           ...+.+..+.      +...+.          ..+++.            .+++|+++||+ ..|+++....+.+
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~  567 (1284)
T 3g5u_A          488 REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA  567 (1284)
T ss_dssp             CSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence                 0111111111      111110          012211            36899999998 7889888888888


Q ss_pred             HHhhccCceeEEEEecCCCcc
Q 018543          153 TMEKYSASCRLILCCNSSSKV  173 (354)
Q Consensus       153 ~le~~~~~~~~Il~~~~~~~l  173 (354)
                      .+.+...+..+|+++++.+.+
T Consensus       568 ~l~~~~~~~t~i~itH~l~~i  588 (1284)
T 3g5u_A          568 ALDKAREGRTTIVIAHRLSTV  588 (1284)
T ss_dssp             HHHHHHTTSEEEEECSCHHHH
T ss_pred             HHHHHcCCCEEEEEecCHHHH
Confidence            886655667788888876543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.23  E-value=2.2e-06  Score=82.86  Aligned_cols=55  Identities=13%  Similarity=0.092  Sum_probs=39.1

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC-ceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++.....+.+.+.+... +..+|++++ .......+.+|+.++
T Consensus       238 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH-dl~~~~~~~drv~vl  294 (608)
T 3j16_B          238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH-DLSVLDYLSDFVCII  294 (608)
T ss_dssp             SCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECS-CHHHHHHHCSEEEEE
T ss_pred             hCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEE
Confidence            47799999998 78999999999999877644 344555544 444445666776554

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.22  E-value=5.7e-07  Score=72.74  Aligned_cols=43  Identities=12%  Similarity=0.126  Sum_probs=29.1

Q ss_pred             CCceEEEEeCC-CcCCHH----------------HHHHHHHHHhhc-cCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEV-DKLSRE----------------AQHSLRRTMEKY-SASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~----------------~~~~Ll~~le~~-~~~~~~Il~~~~~~  171 (354)
                      .+++++++||+ ..+++.                ....+.+.+.+. ..+..+|+++++.+
T Consensus       100 ~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~  160 (171)
T 4gp7_A          100 CFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE  160 (171)
T ss_dssp             CEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred             CcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence            46799999998 567766                446667766443 23466777777754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.21  E-value=1.5e-06  Score=91.54  Aligned_cols=133  Identities=20%  Similarity=0.286  Sum_probs=80.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCC-------------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG-------------  103 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------  103 (354)
                      +.|.||+|+||||+++.+++ ++.+..+.+.+++.+..  ...      ....  ...+.+.+++..             
T Consensus      1062 v~ivG~sGsGKSTl~~~l~g-~~~p~~G~I~i~g~~i~--~~~------~~~~--r~~i~~v~Q~~~l~~~ti~eNi~~~ 1130 (1284)
T 3g5u_A         1062 LALVGSSGCGKSTVVQLLER-FYDPMAGSVFLDGKEIK--QLN------VQWL--RAQLGIVSQEPILFDCSIAENIAYG 1130 (1284)
T ss_dssp             EEEECSSSTTHHHHHHHHTT-SSCCSEEEEESSSSCTT--SSC------HHHH--TTSCEEEESSCCCCSSBHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCEEcc--cCC------HHHH--HhceEEECCCCccccccHHHHHhcc
Confidence            89999999999999999998 77888888888887554  110      0000  011222221110             


Q ss_pred             ----CcchhHHHHHHHHH-----HhcCCC-----------CCCCC------------CCceEEEEeCC-CcCCHHHHHHH
Q 018543          104 ----FQDRYVVQEVIKEM-----AKNRPI-----------DTKGK------------RGFKVLVLNEV-DKLSREAQHSL  150 (354)
Q Consensus       104 ----~~~~~~i~~~~~~~-----~~~~~~-----------~~~~~------------~~~~viiiDE~-d~l~~~~~~~L  150 (354)
                          ......+.+..+..     ....+.           .+|+.            .+++++++||+ ..++......+
T Consensus      1131 ~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A         1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp             CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence                01111222222221     111111           12211            36899999998 78999999999


Q ss_pred             HHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543          151 RRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       151 l~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .+.+++...+..+|+++++.+.+..  .+|+.
T Consensus      1211 ~~~l~~~~~~~tvi~isH~l~~i~~--~dri~ 1240 (1284)
T 3g5u_A         1211 QEALDKAREGRTCIVIAHRLSTIQN--ADLIV 1240 (1284)
T ss_dssp             HHHHHHHSSSSCEEEECSCTTGGGS--CSEEE
T ss_pred             HHHHHHhCCCCEEEEEecCHHHHHc--CCEEE
Confidence            9998776666778888888876522  45543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.18  E-value=6e-07  Score=94.68  Aligned_cols=126  Identities=19%  Similarity=0.295  Sum_probs=74.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc-----------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ-----------  105 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------  105 (354)
                      +.+.||+|+||||+++.+.+ ++.+..+.+.+++.+..          ++....-...+.+.+++.-..           
T Consensus       447 vaivG~sGsGKSTll~ll~~-~~~~~~G~I~idG~~i~----------~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g  515 (1321)
T 4f4c_A          447 VALVGSSGCGKSTIISLLLR-YYDVLKGKITIDGVDVR----------DINLEFLRKNVAVVSQEPALFNCTIEENISLG  515 (1321)
T ss_dssp             EEEEECSSSCHHHHHHHHTT-SSCCSEEEEEETTEETT----------TSCHHHHHHHEEEECSSCCCCSEEHHHHHHTT
T ss_pred             EEEEecCCCcHHHHHHHhcc-ccccccCcccCCCccch----------hccHHHHhhcccccCCcceeeCCchhHHHhhh
Confidence            89999999999999999998 67888888888886543          111000011122222222111           


Q ss_pred             ----chhHHHHHHHH------HHhcCC----------CCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          106 ----DRYVVQEVIKE------MAKNRP----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       106 ----~~~~i~~~~~~------~~~~~~----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                          ....+.+.++.      +...+.          ..+++            -.+++|+++||+ ..++......+.+
T Consensus       516 ~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~  595 (1321)
T 4f4c_A          516 KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ  595 (1321)
T ss_dssp             CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred             cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHH
Confidence                11122222222      111110          01121            147899999998 6777666666666


Q ss_pred             HHhhccCceeEEEEecCCCcc
Q 018543          153 TMEKYSASCRLILCCNSSSKV  173 (354)
Q Consensus       153 ~le~~~~~~~~Il~~~~~~~l  173 (354)
                      .+.+...+..+|++|++.+.+
T Consensus       596 ~l~~~~~~~T~iiiaHrls~i  616 (1321)
T 4f4c_A          596 ALDKAAKGRTTIIIAHRLSTI  616 (1321)
T ss_dssp             HHHHHHTTSEEEEECSCTTTT
T ss_pred             HHHHHhCCCEEEEEcccHHHH
Confidence            666655667788889887744

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.12  E-value=1.1e-05  Score=72.80  Aligned_cols=46  Identities=24%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             CCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543            9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus         9 P~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.+++++...+ ....+  ....+.  .+++.||+|+||||+++++++.+.
T Consensus       103 ~~~l~~lg~~~-~l~~l--~~~~~g--~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          103 VLTMEELGMGE-VFKRV--SDVPRG--LVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             CCCTTTTTCCH-HHHHH--HHCSSE--EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCCHHHcCChH-HHHHH--HhCCCC--EEEEECCCCCCHHHHHHHHHhccc
Confidence            44677765443 33322  122222  499999999999999999998763

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.11  E-value=4.8e-05  Score=80.09  Aligned_cols=195  Identities=14%  Similarity=0.192  Sum_probs=99.5

Q ss_pred             CCCCCCcccCHHHHHHHHHHHhcC--CCCeEEEeCCCCCcHHHHHHHHHHHh--cCCCCcccccccccccccC-CCcccc
Q 018543            9 PKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQV--FGPGAEKVKVENKTWKIDA-GSRNID   83 (354)
Q Consensus         9 P~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKTtla~~la~~l--~~~~~~~~~~~~~~~~~~~-~~~~~~   83 (354)
                      |.....++|.+..++.|...+...  ....+.|+|+.|+||||+|+.+++..  ....     +.+..+.+.- ......
T Consensus       120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~  194 (1249)
T 3sfz_A          120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGC-----FSGGVHWVSIGKQDKSG  194 (1249)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTT-----STTCEEEEECCSCCHHH
T ss_pred             CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhh-----CCCeEEEEEECCcCchH
Confidence            556678999999999999988542  33338899999999999998876532  0100     0000000000 000000


Q ss_pred             c--cccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543           84 L--ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (354)
Q Consensus        84 ~--~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~  161 (354)
                      .  ....+.  ..+......... ......++...+.....    ...++-+||||+++..  .       .++....++
T Consensus       195 ~~~~~~~~~--~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~----~~~~~~LlvlDd~~~~--~-------~~~~~~~~~  258 (1249)
T 3sfz_A          195 LLMKLQNLC--MRLDQEESFSQR-LPLNIEEAKDRLRVLML----RKHPRSLLILDDVWDP--W-------VLKAFDNQC  258 (1249)
T ss_dssp             HHHHHHHHH--HHHTTTCTTCSS-CCSSHHHHHHHHHHHTS----SSSCSCEEEEESCCCH--H-------HHTTTCSSC
T ss_pred             HHHHHHHHH--HHhhhhcccccC-CCCCHHHHHHHHHHHHh----ccCCCEEEEEecCCCH--H-------HHHhhcCCC
Confidence            0  000000  000000000000 00012222222222111    1123569999999842  1       233345667


Q ss_pred             eEEEEecCCCcccHHHhhhcceeeecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 018543          162 RLILCCNSSSKVTEAIRSRCLNIRINS-PTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR  226 (354)
Q Consensus       162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~-~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R  226 (354)
                      ++|+||.+.. +..........+.+.+ ++.++-.+.+...+....-.. ++....|++.++|-+=
T Consensus       259 ~ilvTtR~~~-~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~-~~~~~~i~~~~~glPL  322 (1249)
T 3sfz_A          259 QILLTTRDKS-VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDL-PAEAHSIIKECKGSPL  322 (1249)
T ss_dssp             EEEEEESSTT-TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTC-CTHHHHHHHHTTTCHH
T ss_pred             EEEEEcCCHH-HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhC-cHHHHHHHHHhCCCHH
Confidence            8888877653 2111122235677775 999999999887663222122 3567889999888653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.10  E-value=3e-06  Score=82.07  Aligned_cols=55  Identities=9%  Similarity=0.137  Sum_probs=39.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++..+..+.+.+.+.. .+..+|+++++. .....+.+|..++
T Consensus       245 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl  301 (607)
T 3bk7_A          245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVV  301 (607)
T ss_dssp             SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEE
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEE
Confidence            47899999998 8899999888888887653 245566666654 3445566666544

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.09  E-value=7.1e-06  Score=78.34  Aligned_cols=55  Identities=11%  Similarity=0.136  Sum_probs=40.9

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|++..+..+.+.+.+...+..+|+++++. .....+.+|+.++
T Consensus       155 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl-~~~~~~~d~i~vl  210 (538)
T 3ozx_A          155 READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL-IVLDYLTDLIHII  210 (538)
T ss_dssp             SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCH-HHHHHHCSEEEEE
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeCh-HHHHhhCCEEEEe
Confidence            46799999998 7899999999999998765556666666655 3445666666544

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.08  E-value=1.7e-05  Score=66.69  Aligned_cols=22  Identities=41%  Similarity=0.715  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.||+|+||||+++++++.+
T Consensus        19 i~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           19 YIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhccC
Confidence            8999999999999999999854

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.02  E-value=1.1e-05  Score=78.13  Aligned_cols=55  Identities=5%  Similarity=0.115  Sum_probs=38.1

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhccee
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .+++++++||+ ..|+...+..+.+.+.+..  .+..+|+++++. .....+.+|+.++
T Consensus       484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl  541 (608)
T 3j16_B          484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVF  541 (608)
T ss_dssp             SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEC
T ss_pred             hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence            57899999998 7899999888888886642  234566655554 4445566665444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.99  E-value=0.00037  Score=78.14  Aligned_cols=169  Identities=15%  Similarity=0.232  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeC
Q 018543           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (354)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (354)
                      +.....+..++..+..  ..+.||+|||||++++.+|+.+ +..                               .+.++
T Consensus       591 drcy~tl~~Al~~~~g--g~~~GPaGtGKTet~k~La~~l-gr~-------------------------------~~vfn  636 (3245)
T 3vkg_A          591 DRCYLTLTQALESRMG--GNPFGPAGTGKTETVKALGSQL-GRF-------------------------------VLVFC  636 (3245)
T ss_dssp             HHHHHHHHHHHHTTCE--EEEECSTTSSHHHHHHHHHHHT-TCC-------------------------------EEEEE
T ss_pred             HHHHHHHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHh-CCe-------------------------------EEEEe
Confidence            3344556666655443  4689999999999999999976 211                               11222


Q ss_pred             CCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHh-------h--------------c
Q 018543           99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME-------K--------------Y  157 (354)
Q Consensus        99 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le-------~--------------~  157 (354)
                      +++. . +...+..+++-+++..          .-.++||+++++.+....+...+.       +              .
T Consensus       637 C~~~-~-d~~~~g~i~~G~~~~G----------aW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l  704 (3245)
T 3vkg_A          637 CDEG-F-DLQAMSRIFVGLCQCG----------AWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISL  704 (3245)
T ss_dssp             CSSC-C-CHHHHHHHHHHHHHHT----------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEEC
T ss_pred             CCCC-C-CHHHHHHHHhhHhhcC----------cEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEee
Confidence            2221 1 1123444454445433          457999999999887766555442       1              0


Q ss_pred             cCceeEEEEecC----CCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--------Hc----
Q 018543          158 SASCRLILCCNS----SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE--------KS----  221 (354)
Q Consensus       158 ~~~~~~Il~~~~----~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~--------~s----  221 (354)
                      .+++.++++.|.    ...+++.+++||..+.+..|+.+.+.+++-   ..+|+.-.......++.        .|    
T Consensus       705 ~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L---~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~H  781 (3245)
T 3vkg_A          705 HQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVML---YSQGFKTAEVLAGKIVPLFKLCQEQLSAQSH  781 (3245)
T ss_dssp             CTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHH---HTTTCSCHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             cCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            123445555552    347999999999999999999999988875   35576533333333332        11    


Q ss_pred             -CCCHHHHHHHHHHHH
Q 018543          222 -NRSLRRAILSFETCR  236 (354)
Q Consensus       222 -~gd~R~ai~~L~~~~  236 (354)
                       +=.+|.....|..+.
T Consensus       782 YDfGLRalKsVL~~AG  797 (3245)
T 3vkg_A          782 YDFGLRALKSVLVSAG  797 (3245)
T ss_dssp             CCCSHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHH
Confidence             234777777776553

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.96  E-value=0.00011  Score=63.70  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=20.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~   72 (354)
                      +.|.||+|+||||+++.+++. ..+..+.+.+++..
T Consensus         5 v~lvG~nGaGKSTLln~L~g~-~~~~~G~i~~~g~~   39 (270)
T 3sop_A            5 IMVVGQSGLGKSTLVNTLFKS-QVSRKASSWNREEK   39 (270)
T ss_dssp             EEEEESSSSSHHHHHHHHHHH-HC------------
T ss_pred             EEEECCCCCCHHHHHHHHhCC-CCCCCCccccCCcc
Confidence            789999999999999999984 45566666555543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.91  E-value=1.8e-05  Score=76.84  Aligned_cols=116  Identities=14%  Similarity=0.137  Sum_probs=58.1

Q ss_pred             CCCeEEEeCCCCCcHHHHHHHHHHHhcCC-CCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHH
Q 018543           33 DCPHLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ  111 (354)
Q Consensus        33 ~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~  111 (354)
                      ..|.+.+.||+|+||||+++++++. ..+ +.|.+.+++..+.......       .......+.+.+++....+...+.
T Consensus        44 ~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~-------~~~~~~~i~~v~Q~~~l~~~~tv~  115 (608)
T 3szr_A           44 ALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVN-------EDKWRGKVSYQDYEIEISDASEVE  115 (608)
T ss_dssp             CCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSS-------SSCCEEEESCC---CCCCCHHHHH
T ss_pred             cCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCc-------cccceeEEeeecccccCCCHHHHH
Confidence            3456999999999999999999984 444 5677766665432000000       000112344555554555545555


Q ss_pred             HHHHHHHhc---CCCCC---------CCCCCceEEEEeCC-------CcCCHHHHHHHHHHHhh
Q 018543          112 EVIKEMAKN---RPIDT---------KGKRGFKVLVLNEV-------DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       112 ~~~~~~~~~---~~~~~---------~~~~~~~viiiDE~-------d~l~~~~~~~Ll~~le~  156 (354)
                      +.+......   .....         .....++++++||+       ..+++.....+...+..
T Consensus       116 e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~  179 (608)
T 3szr_A          116 KEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK  179 (608)
T ss_dssp             TTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence            555443211   00000         01235689999999       34454455555555544

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.89  E-value=9.7e-05  Score=67.00  Aligned_cols=45  Identities=27%  Similarity=0.423  Sum_probs=35.8

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   70 (354)
                      +.+...++.|..  ++|.||+|+||||+++++++ +..+..+.+.+++
T Consensus       166 ~~l~~~i~~G~~--i~ivG~sGsGKSTll~~l~~-~~~~~~g~I~ie~  210 (361)
T 2gza_A          166 SFLRRAVQLERV--IVVAGETGSGKTTLMKALMQ-EIPFDQRLITIED  210 (361)
T ss_dssp             HHHHHHHHTTCC--EEEEESSSSCHHHHHHHHHT-TSCTTSCEEEEES
T ss_pred             HHHHHHHhcCCE--EEEECCCCCCHHHHHHHHHh-cCCCCceEEEECC
Confidence            666777777776  99999999999999999998 5566666666654

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.87  E-value=6.3e-05  Score=66.30  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++|+||||+|||+++..++..
T Consensus       126 iLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          126 VIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEECSCSSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHh
Confidence            799999999999999999875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.85  E-value=6.1e-05  Score=63.53  Aligned_cols=23  Identities=22%  Similarity=0.572  Sum_probs=20.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|+||||+||||+++.++..+.
T Consensus        26 ~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           26 IALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999997654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.81  E-value=2.3e-05  Score=66.13  Aligned_cols=23  Identities=35%  Similarity=0.366  Sum_probs=20.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.|.||+|+||||+++.++..+.
T Consensus        28 ~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           28 TEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999998543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.80  E-value=1.3e-05  Score=63.64  Aligned_cols=35  Identities=29%  Similarity=0.390  Sum_probs=29.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~   73 (354)
                      +.|.||+|+||||+++.+++.+  +..+.+.+++...
T Consensus        36 v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i   70 (158)
T 1htw_A           36 VYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTL   70 (158)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEee
Confidence            8999999999999999999965  6667777766543

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.79  E-value=0.00013  Score=70.21  Aligned_cols=57  Identities=16%  Similarity=0.282  Sum_probs=36.3

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC-------cccHHHhhhcceeeecCC
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS-------KVTEAIRSRCLNIRINSP  189 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~-------~l~~~l~sR~~~i~~~~~  189 (354)
                      +.++|||||+..++......|++.+   +.+..+|++.....       .....+.+.+..+.+...
T Consensus       279 ~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~QL~~v~~g~~~~~l~~~~~~~~L~~~  342 (574)
T 3e1s_A          279 PYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTDQLPPVDAGLPLLALAQAAPTIKLTQV  342 (574)
T ss_dssp             SCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTTSCCCSSSCCHHHHHHHHSCEEECCCC
T ss_pred             cCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecccccCCccCCcHHHHHHhcCCEEEccee
Confidence            5689999999999988777666554   35567777765432       233444444555555443

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=97.79  E-value=0.00043  Score=70.17  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=34.7

Q ss_pred             ccCHHHHHHHHHHHhc-CCCCeEEEeCCCCCcHHHHHHHHHH
Q 018543           16 IVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        16 ~g~~~~~~~l~~~l~~-~~~~~~ll~Gp~G~GKTtla~~la~   56 (354)
                      +|.+.....|..++.. +..+.+.++||.|+||||+|+.+++
T Consensus       131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~  172 (1221)
T 1vt4_I          131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL  172 (1221)
T ss_dssp             CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence            8999999999988875 3334489999999999999999885

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.77  E-value=6.8e-05  Score=75.75  Aligned_cols=51  Identities=16%  Similarity=0.180  Sum_probs=37.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .+++++++||+ ..|+......|.+.+.+  .+..+|+++++. .....+.+|+.
T Consensus       565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl-~~l~~~adrii  616 (986)
T 2iw3_A          565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDS-VFLDNVCEYII  616 (986)
T ss_dssp             TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCH-HHHHHHCSEEE
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCH-HHHHHhCCEEE
Confidence            47899999998 78999999999999987  345566665553 34445555543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.75  E-value=4.1e-06  Score=80.08  Aligned_cols=41  Identities=17%  Similarity=0.186  Sum_probs=28.7

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHH--HHHhcCCCCccccccccc
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMAL--LRQVFGPGAEKVKVENKT   72 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~l--a~~l~~~~~~~~~~~~~~   72 (354)
                      +..|..  ++|.||||+||||+++.+  +. +..++.+.+.+++.+
T Consensus        36 i~~Ge~--~~l~G~nGsGKSTL~~~~ll~G-l~~~~~g~i~v~g~~   78 (525)
T 1tf7_A           36 LPIGRS--TLVSGTSGTGKTLFSIQFLYNG-IIEFDEPGVFVTFEE   78 (525)
T ss_dssp             EETTSE--EEEEESTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS
T ss_pred             CCCCeE--EEEEcCCCCCHHHHHHHHHHHH-HHhCCCCEEEEEEeC
Confidence            334443  999999999999999995  44 444455566666543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.73  E-value=8.5e-05  Score=59.99  Aligned_cols=20  Identities=40%  Similarity=0.620  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++|.||||+||||+++.+++
T Consensus         5 I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            5 ILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHh
Confidence            89999999999999999997

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.73  E-value=0.00022  Score=58.16  Aligned_cols=123  Identities=18%  Similarity=0.240  Sum_probs=65.2

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCC--cc------
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF--QD------  106 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~------  106 (354)
                      +.+++++++|.||||+|-.++-...+.+....-+.   |.  ... ...-+...+.... +++.....+.  ..      
T Consensus        29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ---F~--Kg~-~~~gE~~~l~~L~-v~~~~~g~gf~~~~~~~~~~  101 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ---FI--KGT-WPNGERNLLEPHG-VEFQVMATGFTWETQNREAD  101 (196)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE---SS--CCS-SCCHHHHHHGGGT-CEEEECCTTCCCCGGGHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE---ee--CCC-CCccHHHHHHhCC-cEEEEcccccccCCCCcHHH
Confidence            34899999999999999999887765543211110   00  000 0000000010000 1111111111  01      


Q ss_pred             hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC------CcCCHHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543          107 RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV------DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       107 ~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~------d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~  172 (354)
                      ....+..+........     .+++++||+||+      +.++.+   .++..+.+.+.+..+|++++....
T Consensus       102 ~~~a~~~l~~a~~~l~-----~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~Rp~~~~vIlTGr~ap~  165 (196)
T 1g5t_A          102 TAACMAVWQHGKRMLA-----DPLLDMVVLDELTYMVAYDYLPLE---EVISALNARPGHQTVIITGRGCHR  165 (196)
T ss_dssp             HHHHHHHHHHHHHHTT-----CTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHTSCTTCEEEEECSSCCH
T ss_pred             HHHHHHHHHHHHHHHh-----cCCCCEEEEeCCCccccCCCCCHH---HHHHHHHhCcCCCEEEEECCCCcH
Confidence            1123333333333221     357899999998      344443   578888888888999999998754

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.72  E-value=1.9e-05  Score=71.07  Aligned_cols=38  Identities=18%  Similarity=0.284  Sum_probs=27.9

Q ss_pred             HHHHHHHhcCCCCe---EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           23 QNLKKLVTEQDCPH---LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        23 ~~l~~~l~~~~~~~---~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      ..|...+..|.++.   ++|+||||+||||++..++..+..
T Consensus        47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~   87 (356)
T 3hr8_A           47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK   87 (356)
T ss_dssp             HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            35566665233332   899999999999999999987643

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.68  E-value=0.0001  Score=67.02  Aligned_cols=23  Identities=39%  Similarity=0.684  Sum_probs=21.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +++.||+|+||||+++++++.+.
T Consensus       139 i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          139 ILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhhcC
Confidence            99999999999999999999653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.67  E-value=5.7e-05  Score=66.54  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=21.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|.||||+||||+++.++..+.
T Consensus        38 ~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           38 IMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999998664

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.66  E-value=2.1e-05  Score=70.94  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=21.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      ++++||||+||||++..++..+...
T Consensus        64 v~I~G~pGsGKTtLal~la~~~~~~   88 (349)
T 2zr9_A           64 IEIYGPESSGKTTVALHAVANAQAA   88 (349)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhC
Confidence            8999999999999999998766543

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.66  E-value=0.00018  Score=66.54  Aligned_cols=39  Identities=10%  Similarity=0.273  Sum_probs=33.3

Q ss_pred             eEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCC
Q 018543          132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSS  170 (354)
Q Consensus       132 ~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~  170 (354)
                      +++|+||+ ..|+......+.+.|.+...+..+|++|+++
T Consensus       317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~  356 (415)
T 4aby_A          317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLA  356 (415)
T ss_dssp             SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence            89999998 6799999999999998876667777787775

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.65  E-value=0.00019  Score=59.94  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=22.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~   62 (354)
                      +++.|++|+||||++-.+|..+...+
T Consensus         9 I~~~~kgGvGKTt~a~~la~~l~~~G   34 (228)
T 2r8r_A            9 VFLGAAPGVGKTYAMLQAAHAQLRQG   34 (228)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            99999999999999999998875443

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.65  E-value=0.00026  Score=59.12  Aligned_cols=20  Identities=40%  Similarity=0.486  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++|+||||+||||+++.++.
T Consensus        23 ~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           23 TQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999987

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.64  E-value=7e-05  Score=61.35  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=20.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      .+++||.|+||||.+..++.....
T Consensus        11 ~v~~G~mgsGKTT~ll~~a~r~~~   34 (191)
T 1xx6_A           11 EVIVGPMYSGKSEELIRRIRRAKI   34 (191)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHH
Confidence            899999999999998888877643

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.63  E-value=6.1e-05  Score=64.07  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|+||||+||||+++.++...
T Consensus        27 ~~i~G~~GsGKTtl~~~l~~~~   48 (243)
T 1n0w_A           27 TEMFGEFRTGKTQICHTLAVTC   48 (243)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            8999999999999999999863

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=97.62  E-value=0.00097  Score=63.39  Aligned_cols=69  Identities=20%  Similarity=0.314  Sum_probs=51.0

Q ss_pred             ceEEEEeCCCcC----CHHHHHHHHHHHhhc-cCceeEEEEecCCC--cccHHHhhhcc-eeeecCCCHHHHHHHHH
Q 018543          131 FKVLVLNEVDKL----SREAQHSLRRTMEKY-SASCRLILCCNSSS--KVTEAIRSRCL-NIRINSPTEEQIVKVLE  199 (354)
Q Consensus       131 ~~viiiDE~d~l----~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~--~l~~~l~sR~~-~i~~~~~~~~~~~~~L~  199 (354)
                      +-+|||||++.+    ..+....|.++..+. .-+..+|++|..++  .+...+++-|. .|.|.-.+..+...+|.
T Consensus       344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd  420 (574)
T 2iut_A          344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD  420 (574)
T ss_dssp             EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred             cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence            468999999866    344555666666554 34677888888877  67888999885 58888888888887774

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.59  E-value=0.00076  Score=57.09  Aligned_cols=20  Identities=25%  Similarity=0.527  Sum_probs=16.8

Q ss_pred             eEEEeCCCCCcHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALL   55 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la   55 (354)
                      .+++.||+|+||||++..++
T Consensus        78 ~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           78 VVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCcHHhHHHHH
Confidence            49999999999998776554

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.58  E-value=6.6e-05  Score=67.10  Aligned_cols=39  Identities=28%  Similarity=0.464  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+++.+...++.|..++++|.||+|+||||+++++++.+
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            345566666777888889999999999999999999976

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.57  E-value=0.00071  Score=62.49  Aligned_cols=26  Identities=42%  Similarity=0.540  Sum_probs=23.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~   62 (354)
                      +++.||+|+||||++..+|..+...+
T Consensus       103 IlivG~~G~GKTTt~~kLA~~l~~~G  128 (443)
T 3dm5_A          103 LLMVGIQGSGKTTTVAKLARYFQKRG  128 (443)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred             EEEECcCCCCHHHHHHHHHHHHHHCC
Confidence            89999999999999999998776543

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.55  E-value=7.5e-05  Score=66.09  Aligned_cols=23  Identities=35%  Similarity=0.661  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|+||+|+||||+++.+|+.+
T Consensus         7 ~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            38999999999999999999976

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.53  E-value=7.1e-05  Score=67.54  Aligned_cols=22  Identities=36%  Similarity=0.422  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|+||||+||||+++.++...
T Consensus       134 ~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          134 TEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999864

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.53  E-value=0.00043  Score=74.69  Aligned_cols=26  Identities=31%  Similarity=0.515  Sum_probs=22.5

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      .++|+||||||||++|.+++.+....
T Consensus      1429 ~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A         1429 IVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            39999999999999999998876443

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=97.52  E-value=0.00021  Score=69.42  Aligned_cols=38  Identities=18%  Similarity=0.298  Sum_probs=26.9

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCC
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS  170 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~  170 (354)
                      ..+++||||+++++......|++.+   +.+..+|++....
T Consensus       262 ~~d~lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD~~  299 (608)
T 1w36_D          262 HLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDRD  299 (608)
T ss_dssp             SCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEECTT
T ss_pred             CCCEEEEechhhCCHHHHHHHHHhC---CCCCEEEEEcchh
Confidence            5689999999999876655555543   4567777765543

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.52  E-value=0.00058  Score=58.83  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.7

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.++|.|+||+||||+++.++..+
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHH
Confidence            348999999999999999999875

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.51  E-value=0.0011  Score=62.37  Aligned_cols=68  Identities=19%  Similarity=0.282  Sum_probs=46.1

Q ss_pred             eEEEEeCCCcCCH----HHHHHHHHHHhhcc-CceeEEEEecCCC--cccHHHhhhcc-eeeecCCCHHHHHHHHH
Q 018543          132 KVLVLNEVDKLSR----EAQHSLRRTMEKYS-ASCRLILCCNSSS--KVTEAIRSRCL-NIRINSPTEEQIVKVLE  199 (354)
Q Consensus       132 ~viiiDE~d~l~~----~~~~~Ll~~le~~~-~~~~~Il~~~~~~--~l~~~l~sR~~-~i~~~~~~~~~~~~~L~  199 (354)
                      -+++|||+..+-.    ...+.+.++..... .+..+|++|..++  .+...+++.|. .|.|.-.+..+...++.
T Consensus       299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg  374 (512)
T 2ius_A          299 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD  374 (512)
T ss_dssp             EEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred             EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence            4899999855432    22333444444433 3677888888877  47777888774 68888888888887775

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.49  E-value=0.00036  Score=62.17  Aligned_cols=34  Identities=29%  Similarity=0.357  Sum_probs=26.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      +.|.||+|+||||+++.++..+ .+..+.+.+.+.
T Consensus       132 i~lvG~nGaGKTTll~~Lag~l-~~~~g~V~l~g~  165 (328)
T 3e70_C          132 IMFVGFNGSGKTTTIAKLANWL-KNHGFSVVIAAS  165 (328)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHH-HhcCCEEEEEee
Confidence            8999999999999999999855 445555555544

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.49  E-value=0.0001  Score=74.45  Aligned_cols=20  Identities=30%  Similarity=0.285  Sum_probs=18.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++|+||+|+||||+++.++.
T Consensus       665 ~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          665 HIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999854

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.45  E-value=0.00048  Score=63.61  Aligned_cols=24  Identities=29%  Similarity=0.268  Sum_probs=21.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      +++.||+|+||||++..+|..+..
T Consensus       100 I~lvG~~GsGKTTt~~kLA~~l~~  123 (433)
T 3kl4_A          100 IMLVGVQGSGKTTTAGKLAYFYKK  123 (433)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            899999999999999999987643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.43  E-value=0.00063  Score=60.00  Aligned_cols=36  Identities=31%  Similarity=0.225  Sum_probs=28.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccc
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~   72 (354)
                      .+.|.||+|+||||+++.++..+ .+..+.+.+.+.+
T Consensus       104 vi~lvG~nGsGKTTll~~Lagll-~~~~g~V~l~g~D  139 (304)
T 1rj9_A          104 VVLVVGVNGVGKTTTIAKLGRYY-QNLGKKVMFCAGD  139 (304)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEECCC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeec
Confidence            38899999999999999999855 4556666666543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.41  E-value=0.00072  Score=59.33  Aligned_cols=56  Identities=16%  Similarity=0.232  Sum_probs=33.2

Q ss_pred             eeecCC-CHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 018543          184 IRINSP-TEEQIVKVLEFIAKKEGL--------QLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPF  242 (354)
Q Consensus       184 i~~~~~-~~~~~~~~L~~~~~~~~~--------~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~~  242 (354)
                      +.++|. .+.+++..+...+...|.        .+|++...   .....|.++.+..||.....+.++
T Consensus       112 ~~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~---~i~pnd~~Ri~RALEV~~~TG~~~  176 (322)
T 3exa_A          112 FNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAA---AIHPNNYRRVIRALEIIKLTGKTV  176 (322)
T ss_dssp             CCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHT---TSCTTCHHHHHHHHHHHHHTC---
T ss_pred             CcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHh---hcCcccHHHHHHHHHHHHHHCCCH
Confidence            355554 345677777777666653        23333221   235689999999999776655544

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.40  E-value=0.00021  Score=59.11  Aligned_cols=38  Identities=13%  Similarity=0.293  Sum_probs=26.6

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCC
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS  170 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~  170 (354)
                      ++.+|+|||++.++++..+.+ +.+.+  .+..+|++.-+.
T Consensus       101 ~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~  138 (214)
T 2j9r_A          101 EMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQ  138 (214)
T ss_dssp             SCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSB
T ss_pred             CCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEeccc
Confidence            468999999999988766444 43332  356788877643

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.40  E-value=0.00032  Score=70.72  Aligned_cols=42  Identities=12%  Similarity=0.225  Sum_probs=27.4

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHH-HHHhhc--cCceeEEEEecCC
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLR-RTMEKY--SASCRLILCCNSS  170 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll-~~le~~--~~~~~~Il~~~~~  170 (354)
                      .+++++++||+ .++++.....+. .+++..  ..++.+|++|++.
T Consensus       751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~  796 (918)
T 3thx_B          751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP  796 (918)
T ss_dssp             CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH
Confidence            35689999998 678887666665 455543  1345666666654

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.40  E-value=0.00016  Score=63.51  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++++||||+||||++..++....
T Consensus        31 teI~G~pGsGKTtL~Lq~~~~~~   53 (333)
T 3io5_A           31 LILAGPSKSFKSNFGLTMVSSYM   53 (333)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999888776654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.38  E-value=0.00042  Score=65.62  Aligned_cols=50  Identities=22%  Similarity=0.310  Sum_probs=38.7

Q ss_pred             CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   70 (354)
                      ...+...+...++.|..  +++.||+|+||||+++++++ +..++.+.+.+++
T Consensus       246 ~~~~l~~l~~~v~~g~~--i~I~GptGSGKTTlL~aL~~-~i~~~~giitied  295 (511)
T 2oap_1          246 PSGVLAYLWLAIEHKFS--AIVVGETASGKTTTLNAIMM-FIPPDAKVVSIED  295 (511)
T ss_dssp             CHHHHHHHHHHHHTTCC--EEEEESTTSSHHHHHHHHGG-GSCTTCCEEEEES
T ss_pred             CHHHHHHHHHHHhCCCE--EEEECCCCCCHHHHHHHHHh-hCCCCCCEEEEcC
Confidence            46677788888887765  99999999999999999988 4455555555544

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.38  E-value=0.0011  Score=56.28  Aligned_cols=37  Identities=22%  Similarity=0.343  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.....+..+++.   ...+++||+|+|||.++..++..+
T Consensus        96 ~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A           96 DYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             HHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence            4444455555543   249999999999999998887754

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.38  E-value=0.00031  Score=69.65  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|+||+|+||||+.+.++...
T Consensus       579 ~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          579 VLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             EEEESCSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHhhh
Confidence            8999999999999999999854

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.37  E-value=0.0016  Score=54.25  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|+||||+||||+++.+++.+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.34  E-value=0.00013  Score=59.22  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=22.1

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.++|+||+|+||||+++.+++.+
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            459999999999999999999876

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.33  E-value=0.00011  Score=59.35  Aligned_cols=23  Identities=17%  Similarity=0.404  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|+||||+||||+++.+++.+
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            38999999999999999999976

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.33  E-value=0.00034  Score=63.09  Aligned_cols=25  Identities=32%  Similarity=0.565  Sum_probs=21.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      ++++||||+||||++..++..+...
T Consensus        66 i~I~G~pGsGKTtLal~la~~~~~~   90 (356)
T 1u94_A           66 VEIYGPESSGKTTLTLQVIAAAQRE   90 (356)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            8999999999999999998876543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.33  E-value=0.00012  Score=60.40  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=22.0

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ..++|.||+|+||||+++.+++.+
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            359999999999999999999876

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.32  E-value=0.0016  Score=58.87  Aligned_cols=24  Identities=38%  Similarity=0.599  Sum_probs=21.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      ++|+||||+|||+++..++..+..
T Consensus        77 i~I~G~pGsGKTtlal~la~~~~~  100 (366)
T 1xp8_A           77 TEIYGPESGGKTTLALAIVAQAQK  100 (366)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHH
Confidence            899999999999999999877643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.31  E-value=0.00016  Score=59.70  Aligned_cols=24  Identities=29%  Similarity=0.531  Sum_probs=21.7

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ..+.|.||+|+||||+++.+++.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh
Confidence            349999999999999999999866

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.30  E-value=0.00015  Score=58.06  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=21.2

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||+|+||||+++.+++.+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999999876

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.29  E-value=0.00014  Score=58.38  Aligned_cols=23  Identities=35%  Similarity=0.638  Sum_probs=21.1

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+.|+||+|+||||+++.+++.+
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999999865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.28  E-value=0.00043  Score=70.00  Aligned_cols=40  Identities=20%  Similarity=0.423  Sum_probs=32.2

Q ss_pred             CCceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCC
Q 018543          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSS  170 (354)
Q Consensus       129 ~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~  170 (354)
                      .+++++|+||+ ..|+......+.+.+.+..  ..+|++|++.
T Consensus       918 ~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g--~tVIiISHD~  958 (986)
T 2iw3_A          918 QRPHLIVLDEPTNYLDRDSLGALSKALKEFE--GGVIIITHSA  958 (986)
T ss_dssp             TCCSEEEEECGGGTCCHHHHHHHHHHHHSCS--SEEEEECSCH
T ss_pred             hCCCEEEEECCccCCCHHHHHHHHHHHHHhC--CEEEEEECCH
Confidence            57899999998 7899999999999998763  4566666653

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.25  E-value=0.00018  Score=57.93  Aligned_cols=24  Identities=42%  Similarity=0.628  Sum_probs=21.9

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.++|.||||+||||+++.+++.+
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            358999999999999999999876

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=97.24  E-value=0.0079  Score=49.98  Aligned_cols=52  Identities=13%  Similarity=0.272  Sum_probs=33.7

Q ss_pred             CCceEEEEeCCCcCC--HHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhh
Q 018543          129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (354)
Q Consensus       129 ~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR  180 (354)
                      .+.+++|+||+|.+.  ......+..++...+....+++.|..+..-...+.++
T Consensus       157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~  210 (220)
T 1t6n_A          157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK  210 (220)
T ss_dssp             TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred             ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence            456899999999773  3555566666666665677777766665434444433

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.23  E-value=0.00035  Score=57.99  Aligned_cols=35  Identities=34%  Similarity=0.409  Sum_probs=25.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC--CCCcccccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG--PGAEKVKVENK   71 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~~~~   71 (354)
                      +.|.||+|+||||+++.+++.+..  +..+.+..++.
T Consensus        25 v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             EEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            889999999999999999996642  23344444443

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.22  E-value=0.00021  Score=57.74  Aligned_cols=24  Identities=42%  Similarity=0.683  Sum_probs=21.8

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.++|+|+||+||||+++.++..+
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHh
Confidence            349999999999999999999876

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.22  E-value=0.00032  Score=65.53  Aligned_cols=93  Identities=22%  Similarity=0.296  Sum_probs=49.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~  116 (354)
                      +.|.||+|+||||+++.+++.+ .+..+.+.+.+.+..  .....  -..........+.+..+..+......+.+.+..
T Consensus       296 I~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g~D~~--r~aa~--eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~  370 (503)
T 2yhs_A          296 ILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAAGDTF--RAAAV--EQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA  370 (503)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEECCCTT--CHHHH--HHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             EEEECCCcccHHHHHHHHHHHh-hhcCCeEEEecCccc--chhhH--HHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence            8899999999999999999865 344555555433211  00000  000000001123344444343333455565544


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCCCcCC
Q 018543          117 MAKNRPIDTKGKRGFKVLVLNEVDKLS  143 (354)
Q Consensus       117 ~~~~~~~~~~~~~~~~viiiDE~d~l~  143 (354)
                      ...         .++.+++||=+.++.
T Consensus       371 a~~---------~~~DvVLIDTaGrl~  388 (503)
T 2yhs_A          371 AKA---------RNIDVLIADTAGRLQ  388 (503)
T ss_dssp             HHH---------TTCSEEEECCCCSCC
T ss_pred             HHh---------cCCCEEEEeCCCccc
Confidence            332         234789999987764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.22  E-value=0.0001  Score=60.17  Aligned_cols=21  Identities=52%  Similarity=0.735  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++|.||||+||||+++.+++.
T Consensus        12 i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           12 LLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            899999999999999999874

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.21  E-value=0.0035  Score=52.01  Aligned_cols=27  Identities=30%  Similarity=0.522  Sum_probs=23.0

Q ss_pred             CCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           32 QDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        32 ~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +..+++++.|++|+||||++..+.+..
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            445669999999999999999998754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.19  E-value=0.00019  Score=68.49  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=21.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +++.||||+||||+++.++....
T Consensus       284 ~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          284 ILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999998654

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=97.18  E-value=0.0047  Score=50.71  Aligned_cols=51  Identities=14%  Similarity=0.189  Sum_probs=31.0

Q ss_pred             CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCCcccHHHhh
Q 018543          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS  179 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s  179 (354)
                      .+.+++|+||+|.+... ....+..++...+....+++.|...+.-...+.+
T Consensus       143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~  194 (207)
T 2gxq_A          143 SRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAE  194 (207)
T ss_dssp             TTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHH
T ss_pred             hhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHH
Confidence            45689999999976432 2344555555555566677776666543333333

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.16  E-value=0.00023  Score=57.67  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.||+|+||||+++.+++.+
T Consensus         8 i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            8 LVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            8999999999999999999854

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.14  E-value=0.00025  Score=57.77  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||||+||||+++.++..+
T Consensus         5 ~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            5 VVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999999976

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.14  E-value=0.00038  Score=57.41  Aligned_cols=24  Identities=38%  Similarity=0.519  Sum_probs=21.9

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .+.|.||+|+||||+++.+++.+.
T Consensus        27 ~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           27 VIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            389999999999999999999774

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.13  E-value=0.0018  Score=56.89  Aligned_cols=22  Identities=36%  Similarity=0.554  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.|+||+||||+++.++..+
T Consensus         5 I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            5 ILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999999853

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.13  E-value=0.00032  Score=58.77  Aligned_cols=24  Identities=33%  Similarity=0.610  Sum_probs=22.0

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ..++|.|+||+||||+++.+++.+
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            459999999999999999999976

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.13  E-value=0.00031  Score=56.11  Aligned_cols=25  Identities=36%  Similarity=0.451  Sum_probs=22.1

Q ss_pred             CCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           34 CPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        34 ~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.+++|.|++|+||||+++.+++.+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            3459999999999999999999976

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.12  E-value=0.00023  Score=61.13  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||||+||||+++.+++.+
T Consensus        35 i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           35 ILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             EEEESCGGGTTHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8999999999999999999875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.12  E-value=0.00031  Score=61.49  Aligned_cols=22  Identities=41%  Similarity=0.723  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||||+||||+++.++..+
T Consensus        36 ivl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           36 FLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             EEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999865

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.11  E-value=0.0012  Score=65.75  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|+||+|+||||+.+.++...
T Consensus       610 ~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          610 LIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            8999999999999999999753

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.11  E-value=0.00072  Score=62.75  Aligned_cols=48  Identities=17%  Similarity=0.161  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus        20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      .+++.+ --+..|..  +.|.||+|+||||+++.+++. ..++.+.+.+.+.
T Consensus       146 ~vld~v-l~i~~Gq~--~~IvG~sGsGKSTLl~~Iag~-~~~~~G~i~~~G~  193 (438)
T 2dpy_A          146 RAINAL-LTVGRGQR--MGLFAGSGVGKSVLLGMMARY-TRADVIVVGLIGE  193 (438)
T ss_dssp             HHHHHH-SCCBTTCE--EEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEESC
T ss_pred             eEEeee-EEecCCCE--EEEECCCCCCHHHHHHHHhcc-cCCCeEEEEEece
Confidence            344544 44444544  899999999999999999994 5666666666554

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.10  E-value=0.00028  Score=58.23  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||+|+||||+++.+++.+
T Consensus        20 ~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           20 SIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            49999999999999999999876

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.10  E-value=0.00026  Score=57.76  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.8

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .++|.||||+||||+++.+++.+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999999773

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.09  E-value=0.00031  Score=57.02  Aligned_cols=22  Identities=41%  Similarity=0.844  Sum_probs=20.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||||+||||+++.+++.+
T Consensus         7 I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            7 VIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999866

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=97.08  E-value=0.0015  Score=54.61  Aligned_cols=36  Identities=17%  Similarity=0.208  Sum_probs=27.2

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~  169 (354)
                      ++.+|+|||++.+..  ...+.+.+.+  .+..+|++.-+
T Consensus        90 ~~dvViIDEaQF~~~--v~el~~~l~~--~gi~VI~~GL~  125 (234)
T 2orv_A           90 GVAVIGIDEGQFFPD--IVEFCEAMAN--AGKTVIVAALD  125 (234)
T ss_dssp             TCSEEEESSGGGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred             cCCEEEEEchhhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence            358999999999874  5667777766  45678887766

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.08  E-value=0.00097  Score=58.55  Aligned_cols=23  Identities=30%  Similarity=0.274  Sum_probs=20.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.+.||+|+||||++..+|..+.
T Consensus       101 i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A          101 WFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78889999999999999998664

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.08  E-value=0.00087  Score=61.75  Aligned_cols=57  Identities=23%  Similarity=0.381  Sum_probs=37.9

Q ss_pred             CCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV   68 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~   68 (354)
                      .+++++--.......|+..+. .....+++.||+|+||||+++++++.+ .+..+.+..
T Consensus       144 ~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~  200 (418)
T 1p9r_A          144 LDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILT  200 (418)
T ss_dssp             CCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEE
T ss_pred             CCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEE
Confidence            456666545555556666653 222238999999999999999999865 333444443

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.08  E-value=0.0032  Score=55.16  Aligned_cols=22  Identities=32%  Similarity=0.670  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +++.||+|+|||+++..+|+.+
T Consensus        13 i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           13 IFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEECCCccCHHHHHHHHHHhC
Confidence            8899999999999999999875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.08  E-value=0.00033  Score=58.67  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=22.9

Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        23 ~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.+.-.+..|..  +.|.||+|+||||+++.+++.+
T Consensus        14 ~~isl~i~~G~~--~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           14 LVPRGSMNNIYP--LVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             --------CCCC--EEEECSTTSSHHHHHHHHHHHS
T ss_pred             cCCceecCCCCE--EEEECCCCCCHHHHHHHHHhhC
Confidence            344445566665  9999999999999999999844

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.07  E-value=0.00028  Score=57.59  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=20.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.|+||+||||+++.++..+
T Consensus         8 I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            8 IIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            8999999999999999999876

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.06  E-value=0.0004  Score=56.45  Aligned_cols=23  Identities=26%  Similarity=0.585  Sum_probs=21.3

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ..++|+|++|+||||+++.++..
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45999999999999999999986

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.05  E-value=0.00035  Score=56.16  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=21.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||+|+||||+++.+++.+
T Consensus        10 ~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A           10 IYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhh
Confidence            38999999999999999999865

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.05  E-value=0.00047  Score=58.96  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhc---CCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           19 QDIAQNLKKLVTE---QDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        19 ~~~~~~l~~~l~~---~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ..+.+.+...+..   |..  +.|.||+|+||||+++.+++.+
T Consensus        32 ~~~l~~~~~~i~~~l~g~~--i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           32 QQILKKKAEEVKPYLNGRS--MYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             CHHHHHHHHTTHHHHTTCC--EEEECSTTSCHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhcCCCE--EEEECCCCCCHHHHHHHHHHhc
Confidence            3455666656655   554  9999999999999999999976

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.04  E-value=0.00079  Score=61.67  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|+||||+||||+++.++-..
T Consensus       181 ~~I~G~sGsGKTTLl~~la~~~  202 (400)
T 3lda_A          181 TELFGEFRTGKSQLCHTLAVTC  202 (400)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCChHHHHHHHHHHh
Confidence            8999999999999999876443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.04  E-value=0.0017  Score=59.85  Aligned_cols=22  Identities=41%  Similarity=0.561  Sum_probs=19.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.||+|+||||+++.+++..
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            8999999999999999998743

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.04  E-value=0.0031  Score=55.56  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=21.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +++.||+|+||||++..+|..+.
T Consensus       107 i~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A          107 IMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCChHHHHHHHHHHHHH
Confidence            88999999999999999998664

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.03  E-value=0.0028  Score=55.65  Aligned_cols=24  Identities=25%  Similarity=0.528  Sum_probs=21.6

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .++|.||+|+||||++..+|..+.
T Consensus       107 vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          107 YIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            389999999999999999998764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.03  E-value=0.0007  Score=57.70  Aligned_cols=23  Identities=39%  Similarity=0.678  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||||+||||+++.+++.+
T Consensus        31 ~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           31 RYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            49999999999999999999876

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.03  E-value=0.00041  Score=56.70  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=21.9

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ..++|.|+||+||||+++.+++.+
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            349999999999999999999876

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.02  E-value=0.00038  Score=56.45  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|+|+||+||||+++.+++.+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            38999999999999999999876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.02  E-value=0.00033  Score=58.10  Aligned_cols=29  Identities=21%  Similarity=0.414  Sum_probs=22.5

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+..|..  +.|.||+|+||||+++++++.+
T Consensus        16 ~i~~Gei--~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           16 PAAVGRV--VVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ---CCCE--EEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCCE--EEEECCCCCCHHHHHHHHHhhC
Confidence            3445544  8999999999999999999854

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.02  E-value=0.0019  Score=59.59  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++++|+||+||||+++.++..+
T Consensus       261 Iil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          261 VVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             EEEESCTTSSHHHHHHHHTGGG
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8999999999999999998754

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.01  E-value=0.00037  Score=59.81  Aligned_cols=23  Identities=30%  Similarity=0.616  Sum_probs=21.2

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+++.||+|+||||+++.+|+.+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            37899999999999999999976

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.01  E-value=0.00029  Score=60.15  Aligned_cols=36  Identities=19%  Similarity=0.118  Sum_probs=22.5

Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        21 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.+.+.-.+..|..  +.|.||+|+||||+++.+++.+
T Consensus        14 ~l~~isl~i~~g~i--igI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           14 GTENLYFQSMRPFL--IGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             ---------CCSEE--EEEECSTTSSHHHHHHHHHHHH
T ss_pred             eecceeccCCCCEE--EEEECCCCCCHHHHHHHHHHHh
Confidence            44444444444432  8899999999999999999865

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.01  E-value=0.00045  Score=56.91  Aligned_cols=22  Identities=36%  Similarity=0.767  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.||+|+||||+++.+++.+
T Consensus         7 i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            7 VVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            8999999999999999999854

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.00  E-value=0.00042  Score=55.46  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.|++|+||||+++.++..+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999876

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.99  E-value=0.0004  Score=57.87  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||||+||||+++.++..+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999876

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.99  E-value=0.00038  Score=55.65  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=19.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||||+||||+++.+ ..+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHT
T ss_pred             EEEEECCCCCCHHHHHHHH-HHC
Confidence            4889999999999999999 544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.98  E-value=0.0006  Score=59.94  Aligned_cols=35  Identities=31%  Similarity=0.604  Sum_probs=26.4

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+.+.-.+..|..  +.|+||+|+||||+++.+++.+
T Consensus       116 L~~vsl~i~~Ge~--vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          116 LKLWLKGIPKKNC--LAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHTCTTCSE--EEEECSSSSSHHHHHHHHHHHH
T ss_pred             hccceEEecCCCE--EEEECCCCCcHHHHHHHHhhhc
Confidence            3344444444543  9999999999999999999965

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.98  E-value=0.00039  Score=57.38  Aligned_cols=21  Identities=33%  Similarity=0.755  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +.|.||+|+||||+++.+++.
T Consensus        10 i~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A           10 FIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHhh
Confidence            889999999999999999985

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.98  E-value=0.00044  Score=57.96  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=22.0

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ..++|.||||+||||+++.+++.+
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            349999999999999999999976

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.97  E-value=0.00052  Score=55.90  Aligned_cols=23  Identities=35%  Similarity=0.596  Sum_probs=21.2

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.|+||+||||+++.++..+
T Consensus         8 ~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            8 VVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999999876

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.97  E-value=0.00044  Score=56.97  Aligned_cols=23  Identities=39%  Similarity=0.788  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.|+||+||||+++.+++.+
T Consensus        22 ~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           22 RVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999999876

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.97  E-value=0.0014  Score=58.86  Aligned_cols=22  Identities=23%  Similarity=0.206  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|+||||+|||+++..++...
T Consensus       125 ~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          125 TEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             EEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999998864

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.96  E-value=0.0004  Score=57.41  Aligned_cols=22  Identities=45%  Similarity=0.764  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||+|+||||+++.++..+
T Consensus        15 i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           15 LVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999999865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.96  E-value=0.00041  Score=56.53  Aligned_cols=21  Identities=38%  Similarity=0.555  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++|.||+|+||||+++.+++.
T Consensus         5 i~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            5 YIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHhcc
Confidence            789999999999999999873

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.96  E-value=0.00047  Score=56.26  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=20.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.|+||+||||+++.+++.+
T Consensus         6 I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            6 VFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999876

>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.96  E-value=0.0098  Score=45.80  Aligned_cols=121  Identities=13%  Similarity=0.016  Sum_probs=73.1

Q ss_pred             HHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcch
Q 018543           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (354)
Q Consensus        28 ~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  107 (354)
                      .++++-.|.++|+|+.-.-....+..+.+.+...+...                             ......+..    
T Consensus        12 ~l~~~~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~e-----------------------------~~~~~~~~~----   58 (140)
T 1jql_B           12 QLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEE-----------------------------HHTFSIDPN----   58 (140)
T ss_dssp             HHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCE-----------------------------EECCCCSTT----
T ss_pred             HHhccCCceEEEEcCcHHHHHHHHHHHHHHHHHCCCcc-----------------------------eeEEEecCC----
Confidence            34434344599999987666666666666543221110                             000000111    


Q ss_pred             hHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCc-CCHHHHHHHHHHHhhccCceeEEEEecCCC------cccHHHhhh
Q 018543          108 YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYSASCRLILCCNSSS------KVTEAIRSR  180 (354)
Q Consensus       108 ~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~------~l~~~l~sR  180 (354)
                      ....+++..... .|+    .+++++|++.+++. +..+..+.|..+++.+++.+.+|++....+      ++.+++...
T Consensus        59 ~~~~~l~~~~~s-~sl----F~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~  133 (140)
T 1jql_B           59 TDWNAIFSLCQA-MSL----FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANR  133 (140)
T ss_dssp             CCHHHHHHHHHC-CCT----TCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGG
T ss_pred             CCHHHHHHHHhc-CCC----CCCCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhC
Confidence            235566655443 443    46789999999854 667777889999999988888888875433      355666555


Q ss_pred             cceeee
Q 018543          181 CLNIRI  186 (354)
Q Consensus       181 ~~~i~~  186 (354)
                      ..++.+
T Consensus       134 g~~v~~  139 (140)
T 1jql_B          134 SVQVTC  139 (140)
T ss_dssp             CEEEEC
T ss_pred             eEEEEe
Confidence            555543

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=96.96  E-value=0.0099  Score=49.49  Aligned_cols=44  Identities=11%  Similarity=0.295  Sum_probs=28.5

Q ss_pred             CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCCc
Q 018543          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~~  172 (354)
                      .+.+++|+||+|.+... ....+..++...+....+++.|.....
T Consensus       154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~  198 (224)
T 1qde_A          154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN  198 (224)
T ss_dssp             TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred             hhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCH
Confidence            45689999999976432 334455666655556667776666553

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.95  E-value=0.00047  Score=57.09  Aligned_cols=24  Identities=29%  Similarity=0.299  Sum_probs=21.8

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .++|.|+||+||||+++.+++.+.
T Consensus         6 ~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            6 LIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Confidence            389999999999999999999763

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.95  E-value=0.00048  Score=57.10  Aligned_cols=22  Identities=45%  Similarity=0.827  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||||+||+|.++.+++.+
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999976

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.94  E-value=0.00063  Score=57.54  Aligned_cols=24  Identities=33%  Similarity=0.600  Sum_probs=22.0

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ..++|.|+||+||||+++.+++.+
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            459999999999999999999976

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.93  E-value=0.00035  Score=56.49  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=17.2

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.|+||+||||+++.+++.+
T Consensus         7 ~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            7 IIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             EEEEECCC----CHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            48999999999999999999865

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=96.93  E-value=0.0014  Score=64.30  Aligned_cols=42  Identities=19%  Similarity=0.401  Sum_probs=30.5

Q ss_pred             CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      ++...+.+..++.+.  +..|++||||||||+++-.+...+...
T Consensus       191 N~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~  232 (646)
T 4b3f_X          191 DTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ  232 (646)
T ss_dssp             CHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC
Confidence            566677777777644  348999999999998776666555543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.93  E-value=0.00043  Score=57.14  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.||+|+||||+++.+++.+
T Consensus         9 i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            9 IVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            8999999999999999999854

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.92  E-value=0.0008  Score=71.73  Aligned_cols=23  Identities=35%  Similarity=0.635  Sum_probs=21.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +++|||||||||++|++++.+-.
T Consensus      1085 ~l~~G~~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A         1085 VEIYGPESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHhh
Confidence            99999999999999999988653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.92  E-value=0.0011  Score=59.72  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=27.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      +.|.||+|+||||+++.++..+ .+..+.+.+.+.
T Consensus       160 i~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g~  193 (359)
T 2og2_A          160 IMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAG  193 (359)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECC
T ss_pred             EEEEcCCCChHHHHHHHHHhhc-cccCCEEEEecc
Confidence            8899999999999999999965 344556655554

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.91  E-value=0.00052  Score=58.56  Aligned_cols=23  Identities=35%  Similarity=0.681  Sum_probs=21.2

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+.|.||||+||||+++.+++.+
T Consensus        29 ~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           29 RAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            49999999999999999999765

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.91  E-value=0.00057  Score=54.38  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=21.1

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.|++|+||||+++.+++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999876

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.91  E-value=0.00049  Score=57.50  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=21.9

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ..++|.|+||+||||+++.++..+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            358999999999999999999976

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.90  E-value=0.00055  Score=56.30  Aligned_cols=23  Identities=22%  Similarity=0.585  Sum_probs=21.2

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+.|.|++|+||||+++.+++.+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            37899999999999999999976

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.90  E-value=0.0086  Score=59.73  Aligned_cols=22  Identities=36%  Similarity=0.523  Sum_probs=18.1

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+++.||+|+|||+++..++..
T Consensus       111 ~vii~gpTGSGKTtllp~ll~~  132 (773)
T 2xau_A          111 IMVFVGETGSGKTTQIPQFVLF  132 (773)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999977766543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.90  E-value=0.00064  Score=56.73  Aligned_cols=22  Identities=36%  Similarity=0.626  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||||+||+|.++.+++.+
T Consensus        32 I~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7889999999999999999876

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.90  E-value=0.0012  Score=54.36  Aligned_cols=22  Identities=36%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.+.||+|+||||+++.++..+
T Consensus        25 i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           25 LGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999865

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.89  E-value=0.00074  Score=61.30  Aligned_cols=23  Identities=52%  Similarity=0.638  Sum_probs=21.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|+||||+||||+++++++..
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            39999999999999999999864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.89  E-value=0.00051  Score=56.32  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.|+||+||||+++.+++.+
T Consensus        14 ~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           14 IIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            49999999999999999999876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.88  E-value=0.00052  Score=57.75  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.7

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ..++|.||||+||||+++.+++.+
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            349999999999999999999865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.88  E-value=0.00059  Score=56.22  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=21.1

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.|++|+||||+++.+++.+
T Consensus        17 ~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           17 VIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999999865

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.88  E-value=0.00075  Score=61.98  Aligned_cols=52  Identities=19%  Similarity=0.216  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHHHhcCC------------------CCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543           18 HQDIAQNLKKLVTEQD------------------CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~------------------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   70 (354)
                      ...+.+.+...++.|.                  ...+.|.||+|+||||+++++++ +..++.+.+.+++
T Consensus        35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G-l~~p~~GsI~~~g  104 (413)
T 1tq4_A           35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG-IGNEEEGAAKTGV  104 (413)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT-CCTTSTTSCCCCC
T ss_pred             CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC-CCCccCceEEECC
Confidence            3556666777777776                  12489999999999999999997 5566666655554

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.88  E-value=0.0019  Score=69.83  Aligned_cols=25  Identities=32%  Similarity=0.565  Sum_probs=22.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      ++++||||+|||+++..++.+....
T Consensus      1084 vll~G~~GtGKT~la~~~~~ea~k~ 1108 (2050)
T 3cmu_A         1084 VEIYGPESSGKTTLTLQVIAAAQRE 1108 (2050)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHc
Confidence            9999999999999999998876544

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.86  E-value=0.00056  Score=56.80  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.||+|+||||+++.++..+
T Consensus        11 i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           11 IVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEECcCCCCHHHHHHHHHhhC
Confidence            8999999999999999999854

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=96.86  E-value=0.0011  Score=54.05  Aligned_cols=23  Identities=30%  Similarity=0.366  Sum_probs=19.5

Q ss_pred             EEEeCCCCCcHH-HHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKK-TLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKT-tla~~la~~l~   59 (354)
                      +++|||.|+||| .+++++.+...
T Consensus        23 ~fiyG~MgsGKTt~Ll~~i~n~~~   46 (195)
T 1w4r_A           23 QVILGPMFSGKSTELMRRVRRFQI   46 (195)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHH
Confidence            899999999999 78888877653

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.85  E-value=0.00063  Score=57.08  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=21.2

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+.|.||+|+||||+++.+++.+
T Consensus         7 ~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            7 VITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999865

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.85  E-value=0.00066  Score=55.13  Aligned_cols=23  Identities=35%  Similarity=0.511  Sum_probs=21.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|.|++|+||||+++.++..+.
T Consensus        16 i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           16 VWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999774

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.84  E-value=0.0015  Score=57.11  Aligned_cols=23  Identities=30%  Similarity=0.686  Sum_probs=21.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.+.||+|+||||+++.+++.+.
T Consensus        34 i~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           34 IFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            88999999999999999998663

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.84  E-value=0.0019  Score=63.51  Aligned_cols=40  Identities=20%  Similarity=0.223  Sum_probs=30.2

Q ss_pred             eEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCC
Q 018543          132 KVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS  171 (354)
Q Consensus       132 ~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~  171 (354)
                      +++++||+ ..|++..+..+.+++.+.. .+..+|+++++.+
T Consensus       224 ~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~  265 (670)
T 3ux8_A          224 VLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED  265 (670)
T ss_dssp             CEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred             CEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            49999998 7899888888888886543 3456777777654

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=96.84  E-value=0.014  Score=51.15  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=29.8

Q ss_pred             CCceEEEEeCCCcCCH--HHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543          129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~~~~~  172 (354)
                      ...++|||||+|.+..  .....+..++...+.++.+++.+.....
T Consensus       234 ~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~  279 (300)
T 3fmo_B          234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED  279 (300)
T ss_dssp             GGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred             hhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCH
Confidence            3568999999998753  3445555666665666777777666553

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.82  E-value=0.0007  Score=55.17  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.|++|+||||+++.+++.+
T Consensus         3 I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            3 IAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999976

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.81  E-value=0.0033  Score=64.38  Aligned_cols=18  Identities=39%  Similarity=0.556  Sum_probs=17.6

Q ss_pred             EEEeCCCCCcHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMAL   54 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~l   54 (354)
                      ++|+||+|+||||+++.+
T Consensus       792 ~~ItGpNgsGKSTlLr~i  809 (1022)
T 2o8b_B          792 VLVTGPNMGGKSTLMRQA  809 (1022)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHH
Confidence            899999999999999999

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.80  E-value=0.00074  Score=56.70  Aligned_cols=22  Identities=36%  Similarity=0.554  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||||+||||+++.++..+
T Consensus         3 I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            3 ILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999876

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.80  E-value=0.0075  Score=53.46  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=21.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      +.++||+|+||||++..+|..+..
T Consensus       108 I~ivG~~G~GKTT~~~~LA~~l~~  131 (320)
T 1zu4_A          108 FMLVGVNGTGKTTSLAKMANYYAE  131 (320)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            889999999999999999987643

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=96.79  E-value=0.0093  Score=54.05  Aligned_cols=43  Identities=19%  Similarity=0.268  Sum_probs=28.5

Q ss_pred             CCceEEEEeCCCcCCH--HHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+.++||+||+|.+..  .....+..++...+....+|+.|..+.
T Consensus       144 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  188 (395)
T 3pey_A          144 QKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFA  188 (395)
T ss_dssp             TTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred             ccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCC
Confidence            4568999999997653  233445555555556677777776655

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.79  E-value=0.00081  Score=56.11  Aligned_cols=43  Identities=21%  Similarity=0.332  Sum_probs=34.7

Q ss_pred             ccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        16 ~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      -.+.+....++.....++.+.+++.|++|+||||++..++..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3456666777777766677779999999999999999999875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.78  E-value=0.00066  Score=56.26  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=21.7

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .++|.|++|+||||+++.+++.+.
T Consensus        12 ~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A           12 FIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            389999999999999999998763

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.78  E-value=0.00068  Score=56.48  Aligned_cols=23  Identities=22%  Similarity=0.470  Sum_probs=21.1

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||||+||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999876

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.76  E-value=0.00083  Score=54.61  Aligned_cols=22  Identities=36%  Similarity=0.754  Sum_probs=19.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|+||+|+||||+++.+....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999987753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.75  E-value=0.00096  Score=55.36  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.|++|+||||+++.+++.+
T Consensus        11 ~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A           11 LIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            49999999999999999999876

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.72  E-value=0.014  Score=49.20  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=19.8

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .++|.|++|+||||++..+.+.
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4999999999999999998763

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.72  E-value=0.0011  Score=53.35  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=20.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.|++|+||||+++.++..+
T Consensus         8 i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            8 VWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8899999999999999999876

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.72  E-value=0.00066  Score=59.79  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=27.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      +.|.||+|+||||+++.++..+. +..+.+.+.+.
T Consensus       103 i~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~  136 (302)
T 3b9q_A          103 IMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAG  136 (302)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEee
Confidence            88999999999999999998653 44566655554

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=96.70  E-value=0.01  Score=48.63  Aligned_cols=43  Identities=16%  Similarity=0.279  Sum_probs=28.1

Q ss_pred             CCceEEEEeCCCcCCH-HHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+.+++|+||+|.+.. +....+..++...+....+++.|....
T Consensus       145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~  188 (206)
T 1vec_A          145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP  188 (206)
T ss_dssp             TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred             ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCC
Confidence            4568999999996643 344555566665555566676666554

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.70  E-value=0.00096  Score=54.88  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=21.1

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.|++|+||||+++.+++.+
T Consensus         6 ~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            6 LIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999865

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.67  E-value=0.00089  Score=55.51  Aligned_cols=22  Identities=41%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.||+|+||||+++.+++.+
T Consensus         9 i~i~G~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A            9 IGIAGGTASGKTTLAQALARTL   30 (211)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999999865

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.67  E-value=0.039  Score=42.95  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +++.|++|+||||++..+...-
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999997654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.66  E-value=0.0015  Score=53.62  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||+|+||||+++.+++..
T Consensus        22 ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           22 LVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHhhC
Confidence            8999999999999999999853

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.65  E-value=0.0019  Score=53.53  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.|++|+||||+++.+++.+
T Consensus        27 ~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           27 TIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999999876

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.63  E-value=0.00086  Score=55.41  Aligned_cols=20  Identities=30%  Similarity=0.336  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +.|.||+|+||||+++.+++
T Consensus         5 i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            5 VGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEECSTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999987

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.62  E-value=0.00093  Score=55.07  Aligned_cols=21  Identities=24%  Similarity=0.332  Sum_probs=19.7

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .+.|+||+|+||||+++.+++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            478999999999999999998

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.62  E-value=0.0027  Score=56.04  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=25.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC-CCCccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG-PGAEKVKV   68 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~   68 (354)
                      +.|.||+|+||||+++.+++.+.. +..+.+.+
T Consensus        83 igI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v  115 (308)
T 1sq5_A           83 ISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL  115 (308)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence            889999999999999999985431 45555544

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.62  E-value=0.002  Score=53.86  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      ++..+.++..+...+.+.+++.|++|+||||++..++.....
T Consensus        23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~   64 (226)
T 2hf9_A           23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD   64 (226)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            445566777766666666999999999999999999987643

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=96.62  E-value=0.0081  Score=50.53  Aligned_cols=51  Identities=16%  Similarity=0.322  Sum_probs=31.0

Q ss_pred             CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCCcccHHHhh
Q 018543          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS  179 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s  179 (354)
                      .+.+++|+||+|.+... ....+..+++..+....+++.|.....-...+.+
T Consensus       170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~  221 (236)
T 2pl3_A          170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLAR  221 (236)
T ss_dssp             TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHH
T ss_pred             ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHH
Confidence            45689999999976432 2445666666666566666666655433333333

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=96.61  E-value=0.0043  Score=59.98  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=29.6

Q ss_pred             CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      |..++..+...+.++. .++++++|.|+|||..+-.++..+..
T Consensus       183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~  224 (590)
T 3h1t_A          183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWS  224 (590)
T ss_dssp             HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHh
Confidence            4555555555554443 45899999999999998888776643

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.59  E-value=0.0015  Score=61.06  Aligned_cols=39  Identities=21%  Similarity=0.247  Sum_probs=31.8

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~   74 (354)
                      ..+.|.||+|+||||++++++. +..++.+.+.+++..+.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT-ALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH-HHCCCTTTCCCCCTTSC
T ss_pred             ceEEEECCCCCcHHHHHHHHhc-CCCCCCCEEEECCEEcc
Confidence            3488999999999999999998 56777787877776543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.58  E-value=0.00058  Score=57.65  Aligned_cols=21  Identities=43%  Similarity=0.718  Sum_probs=14.5

Q ss_pred             EEEeCCCCCcHHHHHHHHH-HH
Q 018543           37 LLFYGPPGSGKKTLIMALL-RQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la-~~   57 (354)
                      +.|.||+|+||||+++.++ +.
T Consensus        30 i~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           30 LVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEECSCC----CHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            8999999999999999999 74

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=96.56  E-value=0.023  Score=49.27  Aligned_cols=40  Identities=10%  Similarity=0.068  Sum_probs=27.1

Q ss_pred             CCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+.++||+||+|.+...   .+..++........+++.|..+.
T Consensus       224 ~~~~~vIiDEaH~~~~~---~~~~il~~~~~~~~~l~lSATp~  263 (282)
T 1rif_A          224 SQFGMMMNDECHLATGK---SISSIISGLNNCMFKFGLSGSLR  263 (282)
T ss_dssp             GGEEEEEEETGGGCCHH---HHHHHTTTCTTCCEEEEECSSCC
T ss_pred             hhCCEEEEECCccCCcc---cHHHHHHHhhcCCeEEEEeCCCC
Confidence            45689999999999865   45555555544566666665554

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.56  E-value=0.0024  Score=56.55  Aligned_cols=22  Identities=23%  Similarity=0.170  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.||+|+||||+++.++..+
T Consensus        95 igI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           95 IGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999999865

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.56  E-value=0.0063  Score=65.01  Aligned_cols=25  Identities=32%  Similarity=0.565  Sum_probs=21.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      ++|+||||+|||+++..++......
T Consensus        37 ~lI~G~pGsGKT~LAlqla~~~~~~   61 (1706)
T 3cmw_A           37 VEIYGPESSGKTTLTLQVIAAAQRE   61 (1706)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhC
Confidence            9999999999999999998765433

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.55  E-value=0.0014  Score=55.19  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+.|.||+|+||||+++.+++.+
T Consensus        11 ~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A           11 VVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999876

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.55  E-value=0.0079  Score=59.11  Aligned_cols=42  Identities=12%  Similarity=0.180  Sum_probs=32.2

Q ss_pred             CceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCC
Q 018543          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS  171 (354)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~  171 (354)
                      +++++++||+ ..|++..+..+++.+.+.. .+..+|+++++.+
T Consensus       564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~  607 (670)
T 3ux8_A          564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD  607 (670)
T ss_dssp             SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3589999998 7899999988888886653 3456777777754

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=96.53  E-value=0.014  Score=49.71  Aligned_cols=44  Identities=18%  Similarity=0.375  Sum_probs=28.0

Q ss_pred             CCceEEEEeCCCcCCH-HHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543          129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~~~~~  172 (354)
                      ...+++|+||+|.+.. .....+.+++...+....+++.|.....
T Consensus       185 ~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~  229 (249)
T 3ber_A          185 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK  229 (249)
T ss_dssp             TTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCH
T ss_pred             cccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCH
Confidence            4568999999997643 2334455666655555666666665553

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.50  E-value=0.0047  Score=48.95  Aligned_cols=21  Identities=29%  Similarity=0.589  Sum_probs=19.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .+++.|++|+||||+++.+.+
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            389999999999999998865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.47  E-value=0.0015  Score=55.85  Aligned_cols=23  Identities=39%  Similarity=0.572  Sum_probs=21.1

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+.|.||+|+||||+++.+++.+
T Consensus        29 ~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           29 VITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            48999999999999999999765

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.45  E-value=0.0017  Score=55.53  Aligned_cols=23  Identities=17%  Similarity=0.289  Sum_probs=21.1

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+.|.|++|+||||+++.++..+
T Consensus        24 iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           24 LIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999999865

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=96.45  E-value=0.021  Score=47.75  Aligned_cols=43  Identities=21%  Similarity=0.339  Sum_probs=26.0

Q ss_pred             CCceEEEEeCCCcCCHH--HHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLSRE--AQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~--~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+.+++|+||+|.+...  ....+..++...+....+++.|....
T Consensus       165 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~  209 (230)
T 2oxc_A          165 GSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYP  209 (230)
T ss_dssp             GGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred             ccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccC
Confidence            35579999999976321  33444555555555566666655544

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=96.44  E-value=0.011  Score=49.73  Aligned_cols=43  Identities=19%  Similarity=0.345  Sum_probs=27.7

Q ss_pred             CCceEEEEeCCCcCCH-HHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      ...+++|+||+|.+.. .....+..++...+....+++.|....
T Consensus       172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~  215 (237)
T 3bor_A          172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP  215 (237)
T ss_dssp             TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred             ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence            4568999999997642 223445555655555667777666654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.44  E-value=0.0024  Score=50.95  Aligned_cols=26  Identities=23%  Similarity=0.176  Sum_probs=22.8

Q ss_pred             CCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           34 CPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        34 ~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++.+.|.|++|+||||++..++..+.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence            44589999999999999999998764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.44  E-value=0.033  Score=45.20  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=18.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .+++.|++|+|||++++.+.+
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            499999999999999986654

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=96.43  E-value=0.013  Score=50.21  Aligned_cols=43  Identities=14%  Similarity=0.352  Sum_probs=27.8

Q ss_pred             CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+.++|||||+|.+... ....+..++...+....+++.|....
T Consensus       200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~  243 (262)
T 3ly5_A          200 KNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT  243 (262)
T ss_dssp             TTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred             ccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence            45689999999976432 33445555665555666676665554

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=96.39  E-value=0.022  Score=50.95  Aligned_cols=43  Identities=14%  Similarity=0.330  Sum_probs=28.6

Q ss_pred             CCceEEEEeCCCcCCH-HHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+.+++|+||+|.+.. .....+.+.+...+....+++.|..+.
T Consensus       146 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  189 (367)
T 1hv8_A          146 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMP  189 (367)
T ss_dssp             TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCC
T ss_pred             ccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccC
Confidence            4568999999987632 234455666666556677777766665

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.39  E-value=0.002  Score=53.09  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+.|.|++|+||||+++.+++.+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            48899999999999999999876

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.38  E-value=0.012  Score=46.29  Aligned_cols=21  Identities=19%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||+++.+.+.
T Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            9 VCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            899999999999999999764

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.38  E-value=0.0009  Score=56.24  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=23.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      +.|.||+|+||||++++++..+ .+..+.+.+++.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~-~~~~G~i~~~g~   63 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTAL-IPDLTLLHFRNT   63 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH-SCCTTTC-----
T ss_pred             EEEECCCCCCHHHHHHHHhccc-ccCCCeEEECCE
Confidence            5689999999999999999854 555555555543

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.38  E-value=0.00086  Score=55.63  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.||+|+||||+++.+++.+
T Consensus         3 I~i~G~~GsGKsTl~~~L~~~l   24 (214)
T 1gtv_A            3 IAIEGVDGAGKRTLVEKLSGAF   24 (214)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999876

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.37  E-value=0.0021  Score=54.18  Aligned_cols=23  Identities=39%  Similarity=0.726  Sum_probs=21.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.|.||+|+||||+++.+++.+.
T Consensus        29 i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           29 ITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999999773

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.35  E-value=0.002  Score=52.87  Aligned_cols=22  Identities=32%  Similarity=0.268  Sum_probs=20.2

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+.|.|++|+||||+++.+++.
T Consensus        10 ~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A           10 IIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            4899999999999999999984

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.35  E-value=0.051  Score=42.22  Aligned_cols=21  Identities=24%  Similarity=0.518  Sum_probs=19.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||++..+...
T Consensus         6 i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999998764

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=96.35  E-value=0.038  Score=46.05  Aligned_cols=43  Identities=16%  Similarity=0.291  Sum_probs=27.9

Q ss_pred             CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+.+++|+||+|.+... ....+.+++...+.+..+++.+....
T Consensus       166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~  209 (228)
T 3iuy_A          166 RSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWP  209 (228)
T ss_dssp             TTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred             ccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCC
Confidence            45689999999976432 23455556666555667777665544

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=96.35  E-value=0.02  Score=47.54  Aligned_cols=51  Identities=8%  Similarity=0.151  Sum_probs=30.6

Q ss_pred             CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCCcccHHHhh
Q 018543          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS  179 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s  179 (354)
                      ...+++|+||+|.+... ....+..++...+....+++.|.....-...+.+
T Consensus       149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~  200 (219)
T 1q0u_A          149 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLK  200 (219)
T ss_dssp             GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHH
T ss_pred             CcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHH
Confidence            35689999999977432 2344556666655566666666555543333333

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.34  E-value=0.0017  Score=54.97  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=21.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~   62 (354)
                      ++++||||+||||++..++..+...+
T Consensus        26 ~~i~G~~GsGKTtl~~~~~~~~~~~~   51 (247)
T 2dr3_A           26 VLLSGGPGTGKTIFSQQFLWNGLKMG   51 (247)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            89999999999999988877654433

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.34  E-value=0.0096  Score=47.24  Aligned_cols=22  Identities=23%  Similarity=0.523  Sum_probs=19.7

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+++.|++|+||||++..+...
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3899999999999999998763

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.34  E-value=0.0018  Score=58.09  Aligned_cols=47  Identities=13%  Similarity=0.095  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (354)
Q Consensus        20 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   70 (354)
                      .+++.+ --+..|..  +.|.||+|+||||+++.+++. ..++.+.+.+.+
T Consensus        60 ~ald~l-l~i~~Gq~--~gIiG~nGaGKTTLl~~I~g~-~~~~~g~i~~~G  106 (347)
T 2obl_A           60 RAIDGL-LTCGIGQR--IGIFAGSGVGKSTLLGMICNG-ASADIIVLALIG  106 (347)
T ss_dssp             HHHHHH-SCEETTCE--EEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEES
T ss_pred             EEEEee-eeecCCCE--EEEECCCCCCHHHHHHHHhcC-CCCCEEEEEEec
Confidence            445544 44444544  999999999999999999995 445544444433

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.33  E-value=0.0022  Score=56.73  Aligned_cols=23  Identities=22%  Similarity=0.138  Sum_probs=21.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.|.||+|+||||+++.+++.+.
T Consensus        93 vgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           93 IGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCchHHHHHHHHHhhcc
Confidence            88999999999999999998653

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.33  E-value=0.0032  Score=51.98  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=26.9

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecC
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~  169 (354)
                      +..+|+|||++.++++..+.+.++.+   .+.++|+..-+
T Consensus       101 ~~dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~GLd  137 (219)
T 3e2i_A          101 NVDVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAGLD  137 (219)
T ss_dssp             TCSEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEEES
T ss_pred             CCCEEEEechhcCCHHHHHHHHHHHH---CCCEEEEeecc
Confidence            55799999999999887777766663   34566665443

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.31  E-value=0.0027  Score=51.91  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|+|++|+||||+++.++..+
T Consensus        15 IgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           15 IGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            7899999999999999999864

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.31  E-value=0.0012  Score=59.07  Aligned_cols=34  Identities=35%  Similarity=0.357  Sum_probs=25.7

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccc
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   70 (354)
                      .+.|.||||+||||+++++++.+ .+..+.+.+.+
T Consensus        57 ~v~i~G~~GaGKSTLl~~l~g~~-~~~~g~v~i~~   90 (337)
T 2qm8_A           57 RVGITGVPGVGKSTTIDALGSLL-TAAGHKVAVLA   90 (337)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh-hhCCCEEEEEE
Confidence            38999999999999999999855 33344444443

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.0012  Score=61.55  Aligned_cols=37  Identities=16%  Similarity=0.065  Sum_probs=26.8

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE   64 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~   64 (354)
                      +...+..|..  +.|.||+|+||||+++.+++. ..+..+
T Consensus       131 vsl~i~~Ge~--v~IvGpnGsGKSTLlr~L~Gl-~~p~~G  167 (460)
T 2npi_A          131 IRMSNFEGPR--VVIVGGSQTGKTSLSRTLCSY-ALKFNA  167 (460)
T ss_dssp             HHHHSSSCCC--EEEEESTTSSHHHHHHHHHHT-THHHHC
T ss_pred             CceEeCCCCE--EEEECCCCCCHHHHHHHHhCc-ccccCC
Confidence            3334444544  999999999999999999984 333334

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=96.27  E-value=0.014  Score=54.02  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=17.9

Q ss_pred             CeEEEeCCCCCcHHHHH-HHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLI-MALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla-~~la~~l   58 (354)
                      .++++.||.|+|||..+ ..+...+
T Consensus         3 ~~~lv~a~TGsGKT~~~l~~~l~~~   27 (431)
T 2v6i_A            3 ELTVLDLHPGAGKTRRVLPQLVREA   27 (431)
T ss_dssp             CEEEEECCTTSCTTTTHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            35999999999999975 4444333

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=96.27  E-value=0.038  Score=50.32  Aligned_cols=43  Identities=23%  Similarity=0.393  Sum_probs=27.9

Q ss_pred             CCceEEEEeCCCcCC--HHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+.++||+||+|.+.  ......+..++...+.+..+|+.+..+.
T Consensus       167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  211 (412)
T 3fht_A          167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE  211 (412)
T ss_dssp             GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred             hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecC
Confidence            456899999999763  2333444555555556677777766654

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.26  E-value=0.0038  Score=58.80  Aligned_cols=42  Identities=12%  Similarity=0.177  Sum_probs=31.6

Q ss_pred             CHHHHHHHHHHHh--cCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           18 HQDIAQNLKKLVT--EQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        18 ~~~~~~~l~~~l~--~~~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .+++.+.++....  ......++|.|++|+||||+++++++.+.
T Consensus       377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            4566667766652  22223499999999999999999999884

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.25  E-value=0.027  Score=52.08  Aligned_cols=25  Identities=28%  Similarity=0.313  Sum_probs=22.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      +++.|++|+||||++-.+|..+...
T Consensus       103 I~ivG~~GvGKTT~a~~LA~~l~~~  127 (433)
T 2xxa_A          103 VLMAGLQGAGKTTSVGKLGKFLREK  127 (433)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHh
Confidence            8899999999999999999877543

>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2

Probab=96.25  E-value=0.0035  Score=50.86  Aligned_cols=54  Identities=11%  Similarity=0.120  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543          272 RLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG  347 (354)
Q Consensus       272 ~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~  347 (354)
                      .+++....+|++++              +|.|+    .|++..+++.+|..||..|++|+.    ||+|++.++|+
T Consensus        27 ~yDk~Gd~HYd~IS--------------Af~KS----iRGSDpDAALywLaRMl~~GEDp~----~IaRRLvi~As   80 (213)
T 3ctd_A           27 VYDKNGQNHFDVIS--------------AFIKS----IRGSDPDATLYWLANMVEAGEDPN----FIFRRLLISAC   80 (213)
T ss_dssp             -------CHHHHHH--------------HHHHH----HHTTCHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHH--------------HHHHH----HhcCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHH
Confidence            34555566776554              67887    889999999999999999999985    99999999986

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.24  E-value=0.044  Score=51.58  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=21.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|.|++|+||||++..+|..+.
T Consensus       104 I~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W          104 IMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999998764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.24  E-value=0.0035  Score=50.33  Aligned_cols=26  Identities=35%  Similarity=0.517  Sum_probs=22.4

Q ss_pred             CCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           34 CPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        34 ~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .+.+.|.||+|+||||+++.++..+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            34589999999999999999998753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.24  E-value=0.00078  Score=54.02  Aligned_cols=35  Identities=31%  Similarity=0.359  Sum_probs=24.8

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCC--Cccccccc
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVEN   70 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~   70 (354)
                      .+.|.||+|+||||+++.+++.+...+  .+.+.+++
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg   40 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA   40 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence            478999999999999999998653221  34444444

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.23  E-value=0.027  Score=43.73  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=19.8

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+++.|++|+||||++..+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999999764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.22  E-value=0.0018  Score=53.49  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=19.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +.+.||+|+||||+++.+++.
T Consensus        24 i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           24 IGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999874

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.21  E-value=0.0014  Score=60.14  Aligned_cols=36  Identities=33%  Similarity=0.478  Sum_probs=29.9

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHH
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+.+...+..|..+++.|.||+|+||||+++++++.
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            566777777787777999999999999999999874

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.19  E-value=0.019  Score=46.34  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +++.|++|+||||+++.+.+.-
T Consensus        26 i~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           26 LLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            9999999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.17  E-value=0.013  Score=45.73  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||+++.+...
T Consensus         7 i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999998764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.16  E-value=0.037  Score=48.39  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.+.||+|+||||++..+|..+.
T Consensus       101 i~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F          101 IMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             EEEECSSCSSTTHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            88899999999999999998764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.16  E-value=0.0033  Score=50.68  Aligned_cols=23  Identities=30%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .+|+||+|+||||+++++...+.
T Consensus        29 ~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           29 TAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            78999999999999999987553

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=96.14  E-value=0.009  Score=55.03  Aligned_cols=34  Identities=18%  Similarity=0.046  Sum_probs=24.6

Q ss_pred             ceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEec
Q 018543          131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN  168 (354)
Q Consensus       131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~  168 (354)
                      .+++||||+..++......++..+.   . ..+|++..
T Consensus       235 ~d~liiDE~sm~~~~~l~~l~~~~~---~-~~vilvGD  268 (446)
T 3vkw_A          235 FKRLFIDEGLMLHTGCVNFLVEMSL---C-DIAYVYGD  268 (446)
T ss_dssp             CSEEEEETGGGSCHHHHHHHHHHTT---C-SEEEEEEC
T ss_pred             CCEEEEeCcccCCHHHHHHHHHhCC---C-CEEEEecC
Confidence            5899999999999887777766542   2 55666544

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.13  E-value=0.003  Score=52.59  Aligned_cols=21  Identities=33%  Similarity=0.379  Sum_probs=19.5

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .+.|.|++|+||||+++.++.
T Consensus         6 ~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            6 IVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999987

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=96.13  E-value=0.058  Score=49.00  Aligned_cols=43  Identities=12%  Similarity=0.288  Sum_probs=26.4

Q ss_pred             CCceEEEEeCCCcCC-HHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+.+++|+||+|.+. ......+..++...+....+++.|....
T Consensus       162 ~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~  205 (400)
T 1s2m_A          162 SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP  205 (400)
T ss_dssp             TTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred             ccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCC
Confidence            456899999999664 4444445555555444556666555443

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.13  E-value=0.024  Score=44.81  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+++.|++|+||||+++.+...
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3999999999999999999764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.12  E-value=0.0022  Score=56.98  Aligned_cols=40  Identities=25%  Similarity=0.317  Sum_probs=29.8

Q ss_pred             CCeEEEeCCCCCcHHHHHHHHHHHhc-------CCCCcccccccccc
Q 018543           34 CPHLLFYGPPGSGKKTLIMALLRQVF-------GPGAEKVKVENKTW   73 (354)
Q Consensus        34 ~~~~ll~Gp~G~GKTtla~~la~~l~-------~~~~~~~~~~~~~~   73 (354)
                      ++-++|+|++|+||||+++.+++...       .++.+.+.+++...
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l   50 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI   50 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence            45589999999999999999987431       34566666666543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.09  E-value=0.22  Score=43.53  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+.+.|.||+||||++..+.+.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999998753

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.08  E-value=0.014  Score=53.65  Aligned_cols=25  Identities=32%  Similarity=0.332  Sum_probs=22.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      +.+.||+|+||||++..+|..+...
T Consensus       101 i~i~G~~GsGKTT~~~~LA~~l~~~  125 (425)
T 2ffh_A          101 WFLVGLQGSGKTTTAAKLALYYKGK  125 (425)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHc
Confidence            8889999999999999999976543

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=96.07  E-value=0.025  Score=52.99  Aligned_cols=44  Identities=23%  Similarity=0.388  Sum_probs=29.9

Q ss_pred             CCceEEEEeCCCcCC--HHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543          129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       129 ~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~~~  172 (354)
                      .+.++|||||+|.+.  ......+..++...+.+..+|+.+..+..
T Consensus       234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~  279 (479)
T 3fmp_B          234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED  279 (479)
T ss_dssp             GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCH
T ss_pred             ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCH
Confidence            466899999999763  23444555556555666778887777654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.05  E-value=0.0064  Score=53.49  Aligned_cols=30  Identities=23%  Similarity=0.366  Sum_probs=23.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV   68 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~   68 (354)
                      +.|.||+|+||||++++++  +..+..+.+..
T Consensus       168 ~~l~G~sG~GKSTLln~l~--~~~~~~G~i~~  197 (302)
T 2yv5_A          168 CILAGPSGVGKSSILSRLT--GEELRTQEVSE  197 (302)
T ss_dssp             EEEECSTTSSHHHHHHHHH--SCCCCCSCC--
T ss_pred             EEEECCCCCCHHHHHHHHH--HhhCccccccc
Confidence            8899999999999999998  55566565554

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.04  E-value=0.005  Score=52.01  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=21.2

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+.|.|++|+||||+++.+++.+
T Consensus        18 ~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           18 QIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999999866

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.03  E-value=0.022  Score=46.46  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=19.7

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+++.|++|+||||++..+...
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3999999999999999998764

>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}

Probab=96.01  E-value=0.049  Score=51.45  Aligned_cols=38  Identities=11%  Similarity=0.093  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.....+..+++.   ...+++||.|+|||..+-.++....
T Consensus       116 ~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~~  153 (510)
T 2oca_A          116 WYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYL  153 (510)
T ss_dssp             HHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHHH
Confidence            3344444444443   3589999999999999877766543

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=96.01  E-value=0.067  Score=48.33  Aligned_cols=43  Identities=14%  Similarity=0.312  Sum_probs=29.3

Q ss_pred             CCceEEEEeCCCcCCH--HHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      ...++||+||+|.+..  .....+..++...+....+++.|..+.
T Consensus       151 ~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  195 (391)
T 1xti_A          151 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS  195 (391)
T ss_dssp             TTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCC
T ss_pred             cccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCC
Confidence            4668999999998753  455566666666555666676666554

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.00  E-value=0.0035  Score=54.48  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=20.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|+||||+||||+++.++..+.
T Consensus        33 ~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           33 GALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999998653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.99  E-value=0.0068  Score=47.59  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=18.5

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .+++.|++|+||||+++.+.+
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            389999999999999998753

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.98  E-value=0.0039  Score=55.52  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||+|+||||+++.++..+
T Consensus         9 lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcCcHHHHHHHHHHHc
Confidence            38999999999999999999976

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=95.97  E-value=0.025  Score=47.74  Aligned_cols=43  Identities=16%  Similarity=0.299  Sum_probs=28.4

Q ss_pred             CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+.+++|+||+|.+... ....+..++...+.+..+++.+....
T Consensus       175 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~  218 (242)
T 3fe2_A          175 RRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP  218 (242)
T ss_dssp             TTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred             ccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecC
Confidence            45689999999976542 34455566666556666777665554

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.97  E-value=0.016  Score=46.61  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=19.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||++..++..
T Consensus        24 i~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           24 LVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            999999999999999999864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.97  E-value=0.0044  Score=59.14  Aligned_cols=41  Identities=24%  Similarity=0.419  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           19 QDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        19 ~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .++.+.++.....  .+...+.|.|++|+||||+++++++.+.
T Consensus       352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence            4555555543311  1112389999999999999999999764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.96  E-value=0.0029  Score=51.58  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||+|+|||+++..+++..
T Consensus        37 ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           37 VLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999998753

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.93  E-value=0.005  Score=48.02  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=21.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      .+|+||+|+|||+++.++.-.+.+
T Consensus        26 ~~I~G~NGsGKStil~Ai~~~l~g   49 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILVGLYW   49 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcC
Confidence            799999999999999999876644

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.92  E-value=0.0043  Score=50.70  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.+.||+|+||||+++.+++..
T Consensus         8 v~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            8 VVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            8999999999999999998743

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.92  E-value=0.019  Score=45.82  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||+++.+...
T Consensus        21 i~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           21 VIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            999999999999999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.91  E-value=0.025  Score=45.37  Aligned_cols=24  Identities=17%  Similarity=0.318  Sum_probs=20.4

Q ss_pred             CCCeEEEeCCCCCcHHHHHHHHHH
Q 018543           33 DCPHLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        33 ~~~~~ll~Gp~G~GKTtla~~la~   56 (354)
                      +...+++.|++|+||||+++.+..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            334599999999999999998874

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.01  Score=47.96  Aligned_cols=22  Identities=32%  Similarity=0.616  Sum_probs=20.1

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+++.|++|+||||++..+...
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4999999999999999999864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.89  E-value=0.004  Score=50.62  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.||+|+||||+++.+++..
T Consensus        32 v~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           32 VVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            8999999999999999998754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.85  E-value=0.0043  Score=56.17  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=21.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~   62 (354)
                      +.|.||+|+||||+++.+++. +.+.
T Consensus       173 ~~IvG~nGsGKSTLlk~L~gl-~~~~  197 (365)
T 1lw7_A          173 VAILGGESSGKSVLVNKLAAV-FNTT  197 (365)
T ss_dssp             EEEECCTTSHHHHHHHHHHHH-TTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHH-hCCC
Confidence            899999999999999999985 4443

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.84  E-value=0.0036  Score=55.10  Aligned_cols=31  Identities=23%  Similarity=0.228  Sum_probs=21.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV   68 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~   68 (354)
                      +.|.||+|+||||++++++. +..+..+.+.+
T Consensus       172 v~l~G~sG~GKSTll~~l~g-~~~~~~G~i~~  202 (301)
T 1u0l_A          172 STMAGLSGVGKSSLLNAINP-GLKLRVSEVSE  202 (301)
T ss_dssp             EEEECSTTSSHHHHHHHHST-TCCCC------
T ss_pred             EEEECCCCCcHHHHHHHhcc-cccccccceec
Confidence            88999999999999999987 44555554443

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.83  E-value=0.0054  Score=47.85  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=20.4

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +.+++.|++|+||||++..+.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.83  E-value=0.1  Score=43.08  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=20.3

Q ss_pred             CCCeEEEeCCCCCcHHHHHHHHHH
Q 018543           33 DCPHLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        33 ~~~~~ll~Gp~G~GKTtla~~la~   56 (354)
                      ..+.+++.|++|+||||++..+.+
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~   51 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCN   51 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhC
Confidence            344599999999999999998765

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19

Probab=95.81  E-value=0.051  Score=50.39  Aligned_cols=36  Identities=19%  Similarity=0.118  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.....+..+++ +   ++++.+|.|+|||..+-.++...
T Consensus        12 ~~Q~~~i~~~~~-~---~~ll~~~tG~GKT~~~~~~~~~~   47 (494)
T 1wp9_A           12 IYQEVIYAKCKE-T---NCLIVLPTGLGKTLIAMMIAEYR   47 (494)
T ss_dssp             HHHHHHHHHGGG-S---CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh-C---CEEEEcCCCCCHHHHHHHHHHHH
Confidence            333444444444 3   69999999999999888776654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.80  E-value=0.0034  Score=55.74  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||+|+|||+++..+|+.+
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTTS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHC
Confidence            48999999999999999999876

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.79  E-value=0.0059  Score=50.75  Aligned_cols=24  Identities=29%  Similarity=0.355  Sum_probs=21.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      +.|.||+|+||||.++.++..+..
T Consensus         9 i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            9 VTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            889999999999999999998743

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.78  E-value=0.2  Score=46.33  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=19.9

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+.|.|+||+||||+++.+++.
T Consensus       182 kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.78  E-value=0.081  Score=46.49  Aligned_cols=21  Identities=38%  Similarity=0.591  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +.+.|+||+||||++..+.+.
T Consensus        13 v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           13 VAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            899999999999999988653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.78  E-value=0.0056  Score=50.89  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|+|++|+||||+++.+++.+
T Consensus         6 i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            6 IALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8999999999999999999865

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.77  E-value=0.0062  Score=51.07  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=20.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.||||+||||.++.+++.+
T Consensus        11 ~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A           11 LILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             eeeECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999999876

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.77  E-value=0.047  Score=43.56  Aligned_cols=21  Identities=33%  Similarity=0.664  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||++..+.+.
T Consensus         7 i~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            7 LVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999999764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.76  E-value=0.046  Score=43.32  Aligned_cols=21  Identities=29%  Similarity=0.757  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||+++.+...
T Consensus        15 i~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           15 LVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            999999999999999998764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.75  E-value=0.0044  Score=55.13  Aligned_cols=23  Identities=39%  Similarity=0.462  Sum_probs=20.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|+||||+|||+++..++....
T Consensus       110 ~~i~G~~GsGKT~la~~la~~~~  132 (324)
T 2z43_A          110 TEFFGEFGSGKTQLCHQLSVNVQ  132 (324)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHhHHHHHHHHHHh
Confidence            89999999999999999987653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.74  E-value=0.005  Score=53.57  Aligned_cols=20  Identities=35%  Similarity=0.433  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +.|+|++|+||||+++.++.
T Consensus        78 I~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           78 LGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999994

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.74  E-value=0.032  Score=45.55  Aligned_cols=21  Identities=19%  Similarity=0.377  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||+++.+...
T Consensus        32 i~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           32 LVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhhC
Confidence            999999999999999998764

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.72  E-value=0.0082  Score=57.64  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=21.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|+|++|+||||+++.+++.+.
T Consensus       399 I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          399 IFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEeecCCCCCHHHHHHHHHHHhc
Confidence            89999999999999999999874

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.70  E-value=0.024  Score=46.11  Aligned_cols=21  Identities=19%  Similarity=0.460  Sum_probs=19.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .+++.|++|+||||++..+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            389999999999999998865

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.70  E-value=0.035  Score=44.58  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.7

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+++.|++|+||||++..+...
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3999999999999999998763

>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1

Probab=95.67  E-value=0.11  Score=54.28  Aligned_cols=40  Identities=15%  Similarity=0.087  Sum_probs=28.3

Q ss_pred             CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHH
Q 018543           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      |..++..+...+.+|+..+.+++||.|+|||..+...+-.
T Consensus       608 Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~  647 (1151)
T 2eyq_A          608 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL  647 (1151)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHH
Confidence            4555555555555676557999999999999887655433

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.67  E-value=0.0081  Score=50.23  Aligned_cols=24  Identities=33%  Similarity=0.346  Sum_probs=21.8

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .+.|.|++|+||||.++.+++.+.
T Consensus        23 ~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           23 FITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            389999999999999999999873

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.67  E-value=0.086  Score=47.38  Aligned_cols=21  Identities=38%  Similarity=0.593  Sum_probs=19.1

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .+++.|+||+||||++..+++
T Consensus       169 ~v~lvG~~gvGKSTLin~L~~  189 (357)
T 2e87_A          169 TVVIAGHPNVGKSTLLKALTT  189 (357)
T ss_dssp             EEEEECSTTSSHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            499999999999999998865

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=95.65  E-value=0.014  Score=56.91  Aligned_cols=40  Identities=23%  Similarity=0.431  Sum_probs=29.5

Q ss_pred             CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      ++.....+...+.   .+..++.||||||||+++..++..+..
T Consensus       182 n~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~~  221 (624)
T 2gk6_A          182 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLAR  221 (624)
T ss_dssp             CHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHHH
Confidence            4555566665553   245899999999999998888877654

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=95.65  E-value=0.066  Score=45.10  Aligned_cols=43  Identities=21%  Similarity=0.206  Sum_probs=26.8

Q ss_pred             CCceEEEEeCCCcCCH----HHHHHHHHHHhhc-cCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLSR----EAQHSLRRTMEKY-SASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~----~~~~~Ll~~le~~-~~~~~~Il~~~~~~  171 (354)
                      .+.+++|+||+|.+..    .....+..++... +....+++.+....
T Consensus       174 ~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~  221 (245)
T 3dkp_A          174 ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFA  221 (245)
T ss_dssp             TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCC
T ss_pred             ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCC
Confidence            4568999999998754    3455566666443 23455566555544

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.64  E-value=0.0065  Score=51.31  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=21.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.|.||+|+||||.++.++..+.
T Consensus        30 i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           30 IVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             EEEEESTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999998773

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.62  E-value=0.013  Score=52.73  Aligned_cols=30  Identities=30%  Similarity=0.351  Sum_probs=24.3

Q ss_pred             CCCCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           32 QDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        32 ~~~~~~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      ++.+.+.|+|+||+||||++..++..+...
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~  106 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIER  106 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            333449999999999999999999876543

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.61  E-value=0.0052  Score=51.56  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=18.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.||+|+||||.++.+++.+
T Consensus        28 I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           28 ITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             EEEECCC---CHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999877

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.60  E-value=0.0063  Score=48.36  Aligned_cols=20  Identities=35%  Similarity=0.561  Sum_probs=18.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++|.|++|+||||++..+..
T Consensus        19 vli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           19 VLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            99999999999999998876

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A

Probab=95.54  E-value=0.036  Score=53.75  Aligned_cols=42  Identities=7%  Similarity=0.119  Sum_probs=25.6

Q ss_pred             CCceEEEEeCCCcCCHHHHHHHHHHHhhcc-CceeEEEEecCC
Q 018543          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-ASCRLILCCNSS  170 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~  170 (354)
                      .+.++|||||+|.++......+..+++..+ ....+|+.|..+
T Consensus       276 ~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~  318 (618)
T 2whx_A          276 PNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATP  318 (618)
T ss_dssp             CCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSC
T ss_pred             cCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCC
Confidence            456899999999997665444433333321 345566655444

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.53  E-value=0.013  Score=55.99  Aligned_cols=41  Identities=20%  Similarity=0.244  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHhc-CCCC-eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           19 QDIAQNLKKLVTE-QDCP-HLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        19 ~~~~~~l~~~l~~-~~~~-~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +++.+.++..... ++.+ .++|+|++|+||||+++.+++.+.
T Consensus       355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence            5566666666521 2223 389999999999999999998764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.53  E-value=0.0046  Score=54.06  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=18.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      -+.+.||+|+||||+++.++..+
T Consensus         7 iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            7 IISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             EEEEESCC---CCTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            38899999999999999999865

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=95.52  E-value=0.099  Score=47.12  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.0

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +.+.|.|++|+||||+++.+++.
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~  202 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGL  202 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            34889999999999999998763

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.46  E-value=0.0075  Score=51.04  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.|++|+||||+++.+++.+
T Consensus         5 i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            5 LSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            8999999999999999999876

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.43  E-value=0.0083  Score=47.34  Aligned_cols=20  Identities=35%  Similarity=0.562  Sum_probs=18.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +.+.|++|+||||+++.+++
T Consensus         6 v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            6 IALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999875

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.42  E-value=0.017  Score=46.73  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+++.|++|+||||+++.+.+.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3899999999999999999865

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.37  E-value=0.0074  Score=48.58  Aligned_cols=20  Identities=45%  Similarity=0.813  Sum_probs=18.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +++.|++|+||||+++.+++
T Consensus         5 v~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            89999999999999998875

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.36  E-value=0.013  Score=48.41  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||+++.+...
T Consensus        30 i~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           30 LVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            999999999999999998764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.36  E-value=0.01  Score=48.87  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=21.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      .+|+||+|+||||++.++.-.+.+
T Consensus        26 ~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhcC
Confidence            899999999999999999876654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.32  E-value=0.0087  Score=49.13  Aligned_cols=41  Identities=12%  Similarity=0.163  Sum_probs=20.6

Q ss_pred             cCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHH
Q 018543           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++++..+.+.......+.-.+++.|++|+||||++..+...
T Consensus        13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            34444555554444443334999999999999999988763

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.32  E-value=0.023  Score=51.03  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=21.4

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.+.|.|+||+||||++.++++.+
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            348999999999999999999865

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=95.31  E-value=0.053  Score=54.75  Aligned_cols=42  Identities=17%  Similarity=0.197  Sum_probs=32.2

Q ss_pred             CceEEEEeCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCC
Q 018543          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS  171 (354)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~  171 (354)
                      +++++|+||+ ..|+......+++.|.+.. .+..+|+++++.+
T Consensus       826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~  869 (916)
T 3pih_A          826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD  869 (916)
T ss_dssp             SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            3589999998 7899999999888886653 3456777777653

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.31  E-value=0.0099  Score=49.36  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=21.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.|.|++|+||||.++.++..+.
T Consensus         6 i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            6 IVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999873

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.30  E-value=0.0098  Score=49.47  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=21.9

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .+.|.|++|+||||.++.++..+.
T Consensus         7 ~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            7 LILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            389999999999999999999873

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=95.29  E-value=0.041  Score=45.69  Aligned_cols=21  Identities=33%  Similarity=0.638  Sum_probs=19.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|.+|+|||+++..+...
T Consensus        16 ivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           16 LVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCcCHHHHHHHHHhC
Confidence            899999999999999988754

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.29  E-value=0.01  Score=56.39  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=21.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++++|.||+||||+++.+++.+.
T Consensus        38 IvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           38 IVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999998773

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.26  E-value=0.012  Score=53.12  Aligned_cols=26  Identities=38%  Similarity=0.694  Sum_probs=23.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~   62 (354)
                      .+|+||+|+||||+..+++-.+++..
T Consensus        26 ~~i~G~NGaGKTTll~ai~~al~g~~   51 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAISFALFGNG   51 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCCc
Confidence            78999999999999999998877654

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=95.26  E-value=0.078  Score=52.31  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=27.0

Q ss_pred             CCceEEEEeCCCcCC----HHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLS----REAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~----~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+.++||+||+|.+.    ....+.++..+........+|+.|....
T Consensus       137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~  183 (702)
T 2p6r_A          137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP  183 (702)
T ss_dssp             GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT
T ss_pred             hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcC
Confidence            456899999999863    2334445555544344567777666554

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.25  E-value=0.044  Score=44.27  Aligned_cols=21  Identities=24%  Similarity=0.528  Sum_probs=18.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||+++.+...
T Consensus        29 i~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           29 VIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999988643

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=95.25  E-value=0.021  Score=57.04  Aligned_cols=40  Identities=23%  Similarity=0.431  Sum_probs=29.4

Q ss_pred             CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      ++.....+...+.   .+..++.||||||||+++..++..+..
T Consensus       358 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~ti~~~i~~l~~  397 (800)
T 2wjy_A          358 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLAR  397 (800)
T ss_dssp             CHHHHHHHHHHHT---SSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhcc---CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4555555655553   245899999999999998888877764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.25  E-value=0.011  Score=46.35  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=19.9

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+++.|++|+||||++..+.+.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3899999999999999999864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.25  E-value=0.0039  Score=53.61  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+.|.|++|+||||+++.+++.+
T Consensus        26 ~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           26 KISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            48999999999999999998765

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.23  E-value=0.0098  Score=54.06  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||+|+|||+++..+|..+
T Consensus         5 i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            5 IVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHH
T ss_pred             EEEECcchhhHHHHHHHHHHHC
Confidence            8899999999999999999876

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=95.22  E-value=0.027  Score=55.72  Aligned_cols=20  Identities=35%  Similarity=0.471  Sum_probs=16.7

Q ss_pred             CeEEEeCCCCCcHHHHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMAL   54 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~l   54 (354)
                      .++++.||+|+|||+.+-..
T Consensus        47 ~~~lv~apTGsGKT~~~~l~   66 (715)
T 2va8_A           47 NRLLLTSPTGSGKTLIAEMG   66 (715)
T ss_dssp             CCEEEECCTTSCHHHHHHHH
T ss_pred             CcEEEEcCCCCcHHHHHHHH
Confidence            34999999999999988443

>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A

Probab=95.21  E-value=0.039  Score=51.53  Aligned_cols=30  Identities=17%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             HHHhcCCCCeEEEeCCCCCcHHHH-HHHHHHHh
Q 018543           27 KLVTEQDCPHLLFYGPPGSGKKTL-IMALLRQV   58 (354)
Q Consensus        27 ~~l~~~~~~~~ll~Gp~G~GKTtl-a~~la~~l   58 (354)
                      .++.++  .++++.||+|+|||+. +..+...+
T Consensus        16 ~~l~~~--~~vlv~a~TGsGKT~~~~l~il~~~   46 (459)
T 2z83_A           16 NMLRKR--QMTVLDLHPGSGKTRKILPQIIKDA   46 (459)
T ss_dssp             GGGSTT--CEEEECCCTTSCTTTTHHHHHHHHH
T ss_pred             HHHhcC--CcEEEECCCCCCHHHHHHHHHHHHH
Confidence            344444  3499999999999996 44444434

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.19  E-value=0.014  Score=46.40  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=20.5

Q ss_pred             CCeEEEeCCCCCcHHHHHHHHHHH
Q 018543           34 CPHLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        34 ~~~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ...+++.|++|+||||++..+...
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345999999999999999998753

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.16  E-value=0.019  Score=50.72  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=21.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      +++.|+||+|||+++..+|.....
T Consensus        71 ~li~G~pG~GKTtl~l~ia~~~a~   94 (315)
T 3bh0_A           71 VLIAARPSMGKTAFALKQAKNMSD   94 (315)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999876543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.12  E-value=0.01  Score=47.72  Aligned_cols=20  Identities=35%  Similarity=0.562  Sum_probs=18.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +++.|++|+||||+++.+++
T Consensus        10 i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A           10 IALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999875

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=95.10  E-value=0.059  Score=49.13  Aligned_cols=43  Identities=16%  Similarity=0.347  Sum_probs=29.4

Q ss_pred             CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      ...++||+||+|.+... ....+..++...+.+..+|+.|..+.
T Consensus       182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  225 (414)
T 3eiq_A          182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP  225 (414)
T ss_dssp             TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCC
T ss_pred             ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence            34689999999976432 33456666666666777777776654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.10  E-value=0.013  Score=45.98  Aligned_cols=21  Identities=19%  Similarity=0.596  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||++..+...
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.09  E-value=0.01  Score=47.21  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++|.|++|+||||+++.+++.
T Consensus         7 i~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            7 VVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999763

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=95.08  E-value=0.11  Score=47.26  Aligned_cols=43  Identities=19%  Similarity=0.355  Sum_probs=28.6

Q ss_pred             CCceEEEEeCCCcCC-HHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      ...++||+||+|.+. ......+..++...+....+++.|..+.
T Consensus       178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~  221 (410)
T 2j0s_A          178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP  221 (410)
T ss_dssp             TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred             hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCC
Confidence            456899999999764 3334556666666556667777666554

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.08  E-value=0.017  Score=52.76  Aligned_cols=30  Identities=23%  Similarity=0.345  Sum_probs=25.1

Q ss_pred             CCCeEEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543           33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPG   62 (354)
Q Consensus        33 ~~~~~ll~Gp~G~GKTtla~~la~~l~~~~   62 (354)
                      ..+|+++.||+|+|||++++.++..+...+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~   63 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG   63 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence            456799999999999999999998775443

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.05  E-value=0.0064  Score=51.11  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +.|.||+|+||||+++.+++.
T Consensus        23 i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           23 VLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEECSTTSCHHHHHHTTGGG
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            889999999999999998873

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.04  E-value=0.014  Score=45.86  Aligned_cols=21  Identities=19%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||+++.+...
T Consensus         9 i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            9 VVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            899999999999999998764

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=95.03  E-value=0.039  Score=54.67  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=18.3

Q ss_pred             CeEEEeCCCCCcHHHHH-HHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLI-MALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla-~~la~~l   58 (354)
                      .+++++||.|+|||+.+ ..+...+
T Consensus        40 ~~~lv~apTGsGKT~~~~l~il~~~   64 (720)
T 2zj8_A           40 KNALISIPTASGKTLIAEIAMVHRI   64 (720)
T ss_dssp             CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred             CcEEEEcCCccHHHHHHHHHHHHHH
Confidence            45999999999999987 3444434

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A

Probab=95.02  E-value=0.08  Score=49.24  Aligned_cols=41  Identities=10%  Similarity=0.150  Sum_probs=23.1

Q ss_pred             CCceEEEEeCCCcCCHHHHHHHHHHHhh--ccCceeEEEEecCC
Q 018543          129 RGFKVLVLNEVDKLSREAQHSLRRTMEK--YSASCRLILCCNSS  170 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~--~~~~~~~Il~~~~~  170 (354)
                      .+.++|||||+|.++..... ++..+..  ...+..+|+.|..+
T Consensus       109 ~~~~~iViDEah~~~~~~~~-~~~~~~~~~~~~~~~~i~~SAT~  151 (451)
T 2jlq_A          109 PNYNLIVMDEAHFTDPCSVA-ARGYISTRVEMGEAAAIFMTATP  151 (451)
T ss_dssp             CCCSEEEEETTTCCSHHHHH-HHHHHHHHHHTTSCEEEEECSSC
T ss_pred             cCCCEEEEeCCccCCcchHH-HHHHHHHhhcCCCceEEEEccCC
Confidence            45689999999988654332 2222221  22345555555443

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.01  E-value=0.013  Score=49.60  Aligned_cols=21  Identities=29%  Similarity=0.577  Sum_probs=18.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++++|+||+|||+++..++..
T Consensus        33 ~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           33 VLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            899999999999999887654

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.99  E-value=0.012  Score=52.20  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|+||||+|||+++..++...
T Consensus       101 ~~i~G~~gsGKT~la~~la~~~  122 (322)
T 2i1q_A          101 TEFAGVFGSGKTQIMHQSCVNL  122 (322)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999998753

>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*

Probab=94.98  E-value=0.064  Score=49.71  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=17.3

Q ss_pred             eEEEeCCCCCcHHHHH-HHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLI-MALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla-~~la~~l   58 (354)
                      ++++.||.|+|||..+ ..+...+
T Consensus        10 ~vlv~a~TGSGKT~~~l~~~l~~~   33 (440)
T 1yks_A           10 TTVLDFHPGAGKTRRFLPQILAEC   33 (440)
T ss_dssp             EEEECCCTTSSTTTTHHHHHHHHH
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4999999999999974 4444433

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.98  E-value=0.015  Score=46.28  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=19.8

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+++.|++|+||||++..+...
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4999999999999999998764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.97  E-value=0.035  Score=45.19  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=4.2

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+++.|++|+||||++..+...
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3999999999999999988764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.97  E-value=0.013  Score=52.64  Aligned_cols=21  Identities=43%  Similarity=0.662  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +.|.||+|+||||++++++..
T Consensus       218 ~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          218 SIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCccHHHHHHHHhcc
Confidence            899999999999999999863

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.96  E-value=0.015  Score=45.50  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||+++.+.+.
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999999763

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=94.96  E-value=0.028  Score=46.54  Aligned_cols=20  Identities=35%  Similarity=0.609  Sum_probs=17.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +++.|++|+||||+++.+..
T Consensus        18 i~v~G~~~~GKSsli~~~~~   37 (221)
T 3gj0_A           18 LVLVGDGGTGKTTFVKRHLT   37 (221)
T ss_dssp             EEEEECTTSSHHHHHTTBHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            99999999999999998443

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.96  E-value=0.012  Score=54.37  Aligned_cols=24  Identities=38%  Similarity=0.470  Sum_probs=21.6

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .++|.|++|+||||++..+|..+.
T Consensus       101 vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C          101 VILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            399999999999999999998763

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.93  E-value=0.013  Score=45.94  Aligned_cols=22  Identities=27%  Similarity=0.650  Sum_probs=19.6

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+++.|++|+||||++..+...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            3899999999999999998753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.90  E-value=0.018  Score=46.01  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=19.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||+++.+...
T Consensus         8 i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            8 CVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999998753

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=94.90  E-value=0.015  Score=56.17  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=21.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|+|++|+||||+++.+++.+.
T Consensus        55 IvLtGlsGSGKSTlAr~La~~L~   77 (630)
T 1x6v_B           55 VWLTGLSGAGKTTVSMALEEYLV   77 (630)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999874

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=94.89  E-value=0.015  Score=45.68  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=18.7

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .+++.|++|+||||+++.+.+
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            389999999999999998863

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.88  E-value=0.016  Score=45.41  Aligned_cols=21  Identities=24%  Similarity=0.635  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||++..+...
T Consensus         9 i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999998763

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.88  E-value=0.013  Score=45.98  Aligned_cols=21  Identities=24%  Similarity=0.706  Sum_probs=19.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .+++.|++|+||||+++.+.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            389999999999999998875

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}

Probab=94.88  E-value=0.079  Score=46.65  Aligned_cols=43  Identities=12%  Similarity=0.169  Sum_probs=26.2

Q ss_pred             CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+.+++|+||+|.+... ....+...+...+....+++.+..+.
T Consensus       128 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~  171 (337)
T 2z0m_A          128 SSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIP  171 (337)
T ss_dssp             GGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred             hhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCC
Confidence            45689999999977432 23344555555555566666555543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.87  E-value=0.014  Score=47.26  Aligned_cols=24  Identities=25%  Similarity=0.513  Sum_probs=20.6

Q ss_pred             CCCeEEEeCCCCCcHHHHHHHHHH
Q 018543           33 DCPHLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        33 ~~~~~ll~Gp~G~GKTtla~~la~   56 (354)
                      ....+++.|++|+||||++..+.+
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344599999999999999999865

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=94.85  E-value=0.03  Score=55.99  Aligned_cols=39  Identities=21%  Similarity=0.445  Sum_probs=27.6

Q ss_pred             CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++.....+...+.   .+..++.||||||||+++..++..+.
T Consensus       362 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l~  400 (802)
T 2xzl_A          362 NSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHLS  400 (802)
T ss_dssp             CHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHHH
Confidence            4555555655553   24589999999999998877766553

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=94.84  E-value=0.016  Score=54.31  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=21.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +++.|.||+||||+++.+++.+.
T Consensus        42 IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           42 IVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999998774

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=94.83  E-value=0.019  Score=47.35  Aligned_cols=22  Identities=41%  Similarity=0.758  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|-|+.|+||||.++.++..+
T Consensus         5 I~~EG~dGsGKsTq~~~L~~~L   26 (205)
T 4hlc_A            5 ITFEGPEGSGKTTVINEVYHRL   26 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            7899999999999999999977

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.83  E-value=0.014  Score=46.86  Aligned_cols=20  Identities=35%  Similarity=0.413  Sum_probs=18.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++++|++|+|||++|..++.
T Consensus         2 ilV~Gg~~SGKS~~A~~la~   21 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCcHHHHHHHHHh
Confidence            68999999999999998875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.82  E-value=0.017  Score=46.50  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||+++.+...
T Consensus        14 i~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           14 FLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            999999999999999999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	354
d1sxje1	99	a.80.1.1 (E:256-354) Replication factor C5 {Baker'	2e-42
d1njfa_	239	c.37.1.20 (A:) delta prime subunit of DNA polymera	2e-34
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	4e-34
d1iqpa2	231	c.37.1.20 (A:2-232) Replication factor C {Archaeon	3e-31
d1sxjd2	237	c.37.1.20 (D:26-262) Replication factor C2 {Baker'	3e-29
d1sxjb2	224	c.37.1.20 (B:7-230) Replication factor C4 {Baker's	2e-24
d1sxjc2	227	c.37.1.20 (C:12-238) Replication factor C3 {Baker'	2e-22
d2gnoa2	198	c.37.1.20 (A:11-208) gamma subunit of DNA polymera	4e-19
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	4e-17
d1a5ta2	207	c.37.1.20 (A:1-207) delta prime subunit of DNA pol	3e-13
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	7e-13
d1iqpa1	95	a.80.1.1 (A:233-327) Replication factor C {Archaeo	3e-12
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	2e-11
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	6e-08
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	5e-07
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	7e-05
d1qhla_	222	c.37.1.12 (A:) Cell division protein MukB {Escheri	0.001
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	0.001

>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  141 bits (356), Expect = 2e-42
 Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 252 DWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELL--KRLDAEI 309
           DW   + ++   I++E+S   L + R  LY+LL +C+P  ++LK L + LL  + L+   
Sbjct: 3   DWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTN 62

Query: 310 KHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSI 344
           K  +  +++ ++ ++  GNKAIFHLE F+AK M  
Sbjct: 63  KSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCC 97

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (312), Expect = 2e-34
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 18/227 (7%)

Query: 5   DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGA 63
            K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +     
Sbjct: 4   RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL----- 58

Query: 64  EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-VVQEVIKEMAKNRP 122
                 N    I A    +      +     V+L   DA  + +    ++++  +     
Sbjct: 59  ------NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY--- 109

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
                +  FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRCL
Sbjct: 110 --APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 167

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 168 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 214

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  124 bits (310), Expect = 4e-34
 Identities = 98/254 (38%), Positives = 157/254 (61%), Gaps = 11/254 (4%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           WVDKYRPK+L+ +  ++++   LK L    +D PHLL YGP G+GKKT  MALL  +FGP
Sbjct: 1   WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 60

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G  ++K++ + +     + N  LEL  +SS  H+E++PSD G  DR V+QE++KE+A+  
Sbjct: 61  GVYRLKIDVRQFVT---ASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 117

Query: 122 PID-----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
            +D           +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +   
Sbjct: 118 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 177

Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETC 235
           I+S+CL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+ 
Sbjct: 178 IKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 237

Query: 236 RVQ-QYPFKDNQAI 248
            +  +   K +  I
Sbjct: 238 ALNNELALKSSSPI 251

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  115 bits (289), Expect = 3e-31
 Identities = 91/260 (35%), Positives = 129/260 (49%), Gaps = 42/260 (16%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+ LD ++  + I + LK  V     PHLLF GPPG GK T  +AL R++FG  
Sbjct: 14  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN 73

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                                         N +EL+ SD    +  V++E +KE A+ +P
Sbjct: 74  ---------------------------WRHNFLELNASDERGIN--VIREKVKEFARTKP 104

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
           I   G   FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SRC 
Sbjct: 105 I---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 161

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPF 242
             R     +E I K L +IA+ EGL+L       +   +   +RRAI   +         
Sbjct: 162 IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKI 221

Query: 243 KDNQAIPAMDWEEFVFEIAS 262
            D          E VF +AS
Sbjct: 222 TD----------ENVFMVAS 231

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  110 bits (275), Expect = 3e-29
 Identities = 73/253 (28%), Positives = 122/253 (48%), Gaps = 21/253 (8%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRPK LD+V         LKK +   + PH+LFYGPPG+GK + I+AL ++++GP 
Sbjct: 2   WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 61

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
             K    ++  +++A            S    + +         R  V +  K   +N P
Sbjct: 62  LMK----SRILELNA------------SDERGISIVREKVKNFARLTVSKPSKHDLENYP 105

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
                   +K+++L+E D ++ +AQ +LRRTME YS   R  L CN  +++ + + S+C 
Sbjct: 106 -----CPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 160

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPF 242
             R  +      +  L FI+++E ++   G   R+ + S   LRR I   ++        
Sbjct: 161 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYL 220

Query: 243 KDNQAIPAMDWEE 255
            D + I +   EE
Sbjct: 221 GDGKNITSTQVEE 233

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.0 bits (240), Expect = 2e-24
 Identities = 60/233 (25%), Positives = 111/233 (47%), Gaps = 31/233 (13%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+ L  ++ +++    L+++  + + PH++  G PG GK T +  L  ++ G  
Sbjct: 5   WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR- 63

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                                       S     L  + +  +   VV+  IK  A+ + 
Sbjct: 64  ----------------------------SYADGVLELNASDDRGIDVVRNQIKHFAQKKL 95

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
               GK   K+++L+E D ++  AQ +LRRTME YS S R    CN S+K+ E ++S+C 
Sbjct: 96  HLPPGK--HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 153

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
            +R +  ++E ++K L  I K E ++  +     +   +   +R+AI + ++ 
Sbjct: 154 ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 206

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.1 bits (227), Expect = 2e-22
 Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 32/236 (13%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           + WV+KYRP+TLD+V    ++   ++K V E   PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 2   LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 61

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                + +E                                    D   +  V  ++   
Sbjct: 62  KNYSNMVLELNAS--------------------------------DDRGIDVVRNQIKDF 89

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
                   +GFK+++L+E D ++  AQ++LRR +E+Y+ + R  +  N + K+T A+ S+
Sbjct: 90  ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 149

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
           C   R     +E I + +  +   E L+L       L E SN  +RR +   ++C+
Sbjct: 150 CTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 205

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 82.0 bits (202), Expect = 4e-19
 Identities = 29/190 (15%), Positives = 70/190 (36%), Gaps = 32/190 (16%)

Query: 20  DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79
           D  + LK+++ + +   +L  G   S  + + + L   V     +   V      ID   
Sbjct: 1   DQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLE----IDPEG 56

Query: 80  RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV 139
            NI ++                        ++  IK+     P         K +++++ 
Sbjct: 57  ENIGID-----------------------DIRT-IKDFLNYSPELYT----RKYVIVHDC 88

Query: 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLE 199
           ++++++A ++  + +E+      ++L       +   I+SR   + +N P E + +   +
Sbjct: 89  ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEK 148

Query: 200 FIAKKEGLQL 209
                E L L
Sbjct: 149 IGDLWEELPL 158

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.9 bits (190), Expect = 4e-17
 Identities = 43/256 (16%), Positives = 82/256 (32%), Gaps = 44/256 (17%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQD-----------------CPHLLFYGPP 43
            LW  KY P  L QV  ++     LK  +   +                     + YGPP
Sbjct: 2   KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPP 61

Query: 44  GSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG 103
           G GK T    + +++     E+   + ++  +                            
Sbjct: 62  GIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVK---------------------N 100

Query: 104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRL 163
             D   V    K   + + ++ K      V++++EVD +S   +  + +  +    +   
Sbjct: 101 ALDNMSVVGYFKHNEEAQNLNGK----HFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTP 156

Query: 164 ILCCNSSSK--VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS 221
           ++   +             CL+I+   P    I   L  IA +E  +L      RL + +
Sbjct: 157 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT 216

Query: 222 NRSLRRAILSFETCRV 237
              +R+ I    T   
Sbjct: 217 RGDIRQVINLLSTIST 232

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 65.5 bits (158), Expect = 3e-13
 Identities = 37/217 (17%), Positives = 64/217 (29%), Gaps = 18/217 (8%)

Query: 18  HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76
            +   + L          H LL    PG G   LI AL R                 +  
Sbjct: 7   LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY------------LLCQQPQ 54

Query: 77  AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVL 136
                       L  A       + A  + +  +          +  +     G KV+ +
Sbjct: 55  GHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWV 114

Query: 137 NEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVK 196
            +   L+  A ++L +T+E+  A     L      ++   +RSRC    +  P E+  V 
Sbjct: 115 TDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVT 174

Query: 197 VLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
            L        + +           S  S   A+  F+
Sbjct: 175 WL-----SREVTMSQDALLAALRLSAGSPGAALALFQ 206

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 65.4 bits (158), Expect = 7e-13
 Identities = 39/234 (16%), Positives = 79/234 (33%), Gaps = 30/234 (12%)

Query: 8   RPKTLDQVIVHQDIAQNLKKLV-----TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL   +  ++    
Sbjct: 4   RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN- 62

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
              ++V +       G     L                 A   +   +  + +    +R 
Sbjct: 63  ---LRVTSGPAIEKPGDLAAIL-----------------ANSLEEGDILFIDEIHRLSRQ 102

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
            +       +  V++ V      A    R    +      +             +    +
Sbjct: 103 AEEHLYPAMEDFVMDIVIGQGPAA----RTIRLELPRFTLIGATTRPGLITAPLLSRFGI 158

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
              +   T E++ + +   A+  G+++    A  +  +S  ++R A   F   R
Sbjct: 159 VEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVR 212

>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 95

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 59.8 bits (145), Expect = 3e-12
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 263 DIMQEQSPKRLFQVRGKLYELLLNC-VPPVVVLKRLLYELLKR-LDAEIKHEVCHWAAYY 320
           ++M         + R KL E+LL   +    VL ++  E+    ++   K  +      Y
Sbjct: 9   EMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEY 68

Query: 321 EHKMRRGNKAIFHLEAFVAKFMSIYK 346
             ++  G   I  LEA +A+F  I K
Sbjct: 69  NFRLVEGANEIIQLEALLAQFTLIGK 94

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.1 bits (147), Expect = 2e-11
 Identities = 36/237 (15%), Positives = 84/237 (35%), Gaps = 33/237 (13%)

Query: 8   RPKTLDQVIVHQDIAQNLKKLV-----TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           RPK+LD+ I  +++ + L   +       +   H+L  GPPG GK TL   +  ++    
Sbjct: 4   RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 63

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                         A                            +R  V  + +    N+ 
Sbjct: 64  HVTSGPVLVKQGDMAAILT----------------------SLERGDVLFIDEIHRLNKA 101

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR-C 181
           ++       +   ++ +      A     +++        L+     S  ++  +RSR  
Sbjct: 102 VEELLYSAIEDFQIDIMIGKGPSA-----KSIRIDIQPFTLVGATTRSGLLSSPLRSRFG 156

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
           + + ++  T +++ ++++  A    +++    A  +A++S  + R AI   +  R  
Sbjct: 157 IILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDM 213

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 51.6 bits (123), Expect = 6e-08
 Identities = 29/203 (14%), Positives = 51/203 (25%), Gaps = 38/203 (18%)

Query: 35  PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH 94
            + LF GP  SGK TL  ALL    G                            ++    
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCGGK------------------------ALNVNLPLD 190

Query: 95  VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------AQH 148
                         VV E +K            +       +N +D L            
Sbjct: 191 RLNFELGVAIDQFLVVFEDVKGTGGES------RDLPSGQGINNLDNLRDYLDGSVKVNL 244

Query: 149 SLRRTMEKYSASCRLILCCNSS-SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL 207
             +   ++       I+  N      T   R             +  ++  EF+ +K  +
Sbjct: 245 EKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRII 304

Query: 208 QLP-SGFATRLAEKSNRSLRRAI 229
           Q   +     +  +      ++I
Sbjct: 305 QSGIALLLMLIWYRPVAEFAQSI 327

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 19/158 (12%), Positives = 49/158 (31%), Gaps = 10/158 (6%)

Query: 6   KYRPKTLDQVIVHQD-IAQNLKKLVTEQDCP-----HLLFYGPPGSGKKTLIMALLRQVF 59
            Y P  L       + +A+     +                G  G GK TL    +++V 
Sbjct: 12  NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 71

Query: 60  GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
              A++     + +     + N+   L+ +       +     G     +++ ++  +  
Sbjct: 72  EAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVR--GAPALDILKALVDNLYV 129

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157
                       +   +    +++ E  ++L R  E+ 
Sbjct: 130 ENHYLLVIL--DEFQSMLSSPRIAAEDLYTLLRVHEEI 165

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 32/246 (13%), Positives = 54/246 (21%), Gaps = 27/246 (10%)

Query: 6   KYRPKTLDQVIVHQD-----IAQNLKKLVTEQDC--PHLLFYGPPGSGKKTLIMALLRQV 58
            Y PK L     H++     +   L   +       P     G PG+GK   +  L    
Sbjct: 12  SYVPKRL----PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 67

Query: 59  FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA 118
                   +       I      I  E+    +        S   F    V     +++ 
Sbjct: 68  KDK--TTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLY 125

Query: 119 KNRPIDTKGKRGFKVLVLNE--------------VDKLSREAQHSLRRTMEKYSASCRLI 164
               +D        +L                     +       L              
Sbjct: 126 MFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKY 185

Query: 165 LCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS 224
           +   S     +         +           +L+ IA   G Q P       A  +   
Sbjct: 186 VIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 245

Query: 225 LRRAIL 230
           L R+  
Sbjct: 246 LYRSAY 251

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Length = 222

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 21/195 (10%), Positives = 59/195 (30%), Gaps = 5/195 (2%)

Query: 38  LFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL 97
              G  G+GK T + A +  +                  +GSR+  L     +   +  L
Sbjct: 28  TLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSML 87

Query: 98  SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157
              ++  Q   V   + +   ++R +D K      + +  +  +L  E  +  +  +   
Sbjct: 88  DTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPL 147

Query: 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217
           +     +      +      +        +S   +  +      +  +  +        L
Sbjct: 148 NELKDKLE-----AMEGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASL 202

Query: 218 AEKSNRSLRRAILSF 232
               + ++ R++  +
Sbjct: 203 YGGISSAITRSLRDY 217

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 26/219 (11%)

Query: 37  LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96
           +L  GPP SGK  L   +  +   P  +                         S    + 
Sbjct: 43  VLLEGPPHSGKTALAAKIAEESNFPFIKIC-----------------------SPDKMIG 79

Query: 97  LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156
            S +      + +  +  K       +D   +    V +      L  +A   L +    
Sbjct: 80  FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP 139

Query: 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSP---TEEQIVKVLEFIAKKEGLQLPSGF 213
                 +I   +    + E       +  I+ P   T EQ+++ LE +   +  +  +  
Sbjct: 140 QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIA 199

Query: 214 ATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMD 252
                +K    +++ ++  E        ++  + +  + 
Sbjct: 200 QQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLR 238

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	354
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	100.0
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	100.0
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	100.0
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	100.0
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	100.0
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	100.0
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	100.0
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	100.0
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.96
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.96
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	99.94
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.83
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.82
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.79
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.78
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.77
d1sxje1	99	Replication factor C5 {Baker's yeast (Saccharomyce	99.76
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.76
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.72
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.7
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.67
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.64
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.62
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.6
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.57
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.53
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.48
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.47
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.47
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.27
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	99.21
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.13
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.13
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.12
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.12
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.06
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.06
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.05
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.04
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.04
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.02
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.99
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.98
d1iqpa1	95	Replication factor C {Archaeon Pyrococcus furiosus	98.97
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.97
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.91
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.91
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.91
d1sxjd1	91	Replication factor C2 {Baker's yeast (Saccharomyce	98.9
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.89
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.88
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.88
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.84
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.82
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.8
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	98.78
d1sxjc1	95	Replication factor C3 {Baker's yeast (Saccharomyce	98.72
d1sxjb1	92	Replication factor C4 {Baker's yeast (Saccharomyce	98.65
d1tuea_	205	Replication protein E1 helicase domain {Human papi	98.55
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.52
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.37
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.35
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	98.08
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.07
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.96
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.93
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.92
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.91
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.9
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.89
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.85
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.81
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.8
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.79
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.76
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.76
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.74
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.74
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.72
d1okkd2	207	GTPase domain of the signal recognition particle r	97.71
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.65
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.64
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.62
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.62
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.62
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.61
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.59
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.56
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.55
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.45
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.45
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.44
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.44
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.43
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.42
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.41
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.4
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	97.4
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.39
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.37
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.37
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.33
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.3
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.29
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.28
d1jqlb_	140	delta subunit of DNA polymerase III, N-domain {Esc	97.28
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.25
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.24
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.23
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.22
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.21
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.2
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.17
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.15
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.14
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.14
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.12
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.11
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.1
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	97.08
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.04
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.98
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	96.98
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.97
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.89
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	96.89
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	96.88
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.87
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.87
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.87
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	96.83
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.79
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.78
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	96.77
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	96.75
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.74
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	96.73
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.72
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	96.72
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.66
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.65
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.64
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	96.63
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.59
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.59
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.59
d1jr3a1	126	gamma subunit {Escherichia coli [TaxId: 562]}	96.54
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.54
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.51
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.51
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.45
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.45
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.4
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.39
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.35
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.33
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.32
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.31
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.31
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.31
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.3
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.22
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	96.21
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.13
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.08
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.07
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.0
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	96.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.99
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.98
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.94
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.91
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.9
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.9
d1jr3d1	127	delta subunit {Escherichia coli [TaxId: 562]}	95.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.9
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.89
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.86
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.82
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.76
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.74
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.73
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	95.63
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.6
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.6
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.56
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.56
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.52
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.49
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.45
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.44
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.36
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.23
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.22
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.2
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.2
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.18
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.17
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.17
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.08
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.05
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.98
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.95
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.95
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.95
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.93
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.91
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.88
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.87
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.87
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	94.85
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.84
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.84
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	94.84
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.83
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	94.8
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.77
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.76
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.66
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.6
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.58
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.58
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	94.57
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.49
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.48
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.46
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.44
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.41
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.4
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.34
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.34
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.3
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.24
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.17
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	94.09
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.09
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	94.05
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.04
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	93.96
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.95
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.91
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.88
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.81
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.75
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	93.72
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.65
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.62
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	93.59
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.53
d2qw6a1	88	Uncharacterized protein EfaeDRAFT_0938 {Enterococc	93.5
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	93.29
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.18
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.16
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	92.93
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.85
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.75
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.68
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	92.65
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.61
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.53
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.51
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.66
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	91.31
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.23
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.06
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	90.95
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.88
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.26
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.98
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.56
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	89.27
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.13
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	89.1
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.98
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	86.76
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	86.72
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	86.62
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	86.37
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.07
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	84.79
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	84.6
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.35
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	84.3
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.21
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	83.96
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	83.85
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.13
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	83.09
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	81.95
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	81.81
d3bgea1	184	Uncharacterized protein NTHI1458 {Haemophilus infl	81.15
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	80.86
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	80.44
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	80.41

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.1e-42  Score=292.78  Aligned_cols=211  Identities=28%  Similarity=0.483  Sum_probs=180.5

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      ++|+|||||++|+|++||+++++.|+.|++.+..||+||+||||+||||+|+.+|+++.+....                
T Consensus         3 ~pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~----------------   66 (224)
T d1sxjb2           3 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYA----------------   66 (224)
T ss_dssp             CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHH----------------
T ss_pred             CchHhHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhccccc----------------
Confidence            6899999999999999999999999999999999999999999999999999999988543210                


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                                 ..+++++.++....  ..+......+......  ....+++++|+||+|.++..++++|++.+++++.+
T Consensus        67 -----------~~~~~~n~~~~~~~--~~i~~~~~~~~~~~~~--~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~  131 (224)
T d1sxjb2          67 -----------DGVLELNASDDRGI--DVVRNQIKHFAQKKLH--LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNS  131 (224)
T ss_dssp             -----------HHEEEECTTSCCSH--HHHHTHHHHHHHBCCC--CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT
T ss_pred             -----------cccccccccccCCc--eehhhHHHHHHHhhcc--CCCcceEEEEEecccccchhHHHHHhhhccccccc
Confidence                       12345555554432  2344555555544332  13456789999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~  240 (354)
                      +.+++++++.+++.++++|||..++|++|+.+++..+|.+++.+|++.+++++++.|+..++||+|+|++.||.++....
T Consensus       132 ~~~i~~~~~~~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~~~~~~  211 (224)
T d1sxjb2         132 TRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG  211 (224)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             eeeeeccCchhhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876544


Q ss_pred             CC
Q 018543          241 PF  242 (354)
Q Consensus       241 ~~  242 (354)
                      .+
T Consensus       212 ~i  213 (224)
T d1sxjb2         212 LV  213 (224)
T ss_dssp             SB
T ss_pred             Cc
Confidence            43

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-40  Score=284.79  Aligned_cols=206  Identities=36%  Similarity=0.655  Sum_probs=174.4

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      .+|+|||||++|+|++||+++++.|+.|++.+..||+||+||||+||||+++++|+++.+....                
T Consensus         2 ~pw~ekyrP~~~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~----------------   65 (227)
T d1sxjc2           2 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS----------------   65 (227)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH----------------
T ss_pred             CchhhhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCCc----------------
Confidence            3799999999999999999999999999999999999999999999999999999998553311                


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCc
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~  160 (354)
                                 ..+.+.+.++.....  ...............   ...+++++||||+|.++...+++|++.|++++.+
T Consensus        66 -----------~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~  129 (227)
T d1sxjc2          66 -----------NMVLELNASDDRGID--VVRNQIKDFASTRQI---FSKGFKLIILDEADAMTNAAQNALRRVIERYTKN  129 (227)
T ss_dssp             -----------HHEEEECTTSCCSHH--HHHTHHHHHHHBCCS---SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT
T ss_pred             -----------ceeEEecccccCCee--eeecchhhccccccc---cCCCeEEEEEeccccchhhHHHHHHHHhhhcccc
Confidence                       012334433332221  233333333333332   2456789999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 018543          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (354)
Q Consensus       161 ~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~  238 (354)
                      +.+++++|...+++++++|||..+.|++|+.+++..+|.+++.++++.+++++++.|++.++||+|+|++.||.+...
T Consensus       130 ~~~~~~~~~~~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~~~  207 (227)
T d1sxjc2         130 TRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKAT  207 (227)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTT
T ss_pred             eeeccccCcHHHhHHHHHHHHhhhccccccccccccccccccccccccCCHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987644

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-40  Score=284.65  Aligned_cols=222  Identities=22%  Similarity=0.296  Sum_probs=179.5

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      .++||||++|+|++||+++++.|+.++++++.|| +||+||||+|||++|+++++.+.+........        +..+.
T Consensus         2 ~~~KyrP~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~--------~~~~~   73 (239)
T d1njfa_           2 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP--------CGVCD   73 (239)
T ss_dssp             HHHHTCCSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSC--------CSCSH
T ss_pred             chhhhCCCCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCc--------cccch
Confidence            4689999999999999999999999999999998 99999999999999999999987764321100        00011


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~  161 (354)
                      .|..+....+.++++++..+...  ...++++++.+...     +..++++|+||||+|.|+.++|++|++.||+++.++
T Consensus        74 ~~~~i~~~~~~~~~~~~~~~~~~--i~~ir~~~~~~~~~-----~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~  146 (239)
T d1njfa_          74 NCREIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYA-----PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV  146 (239)
T ss_dssp             HHHHHHHTCCTTEEEEETTCSSS--HHHHHHHHHSCCCS-----CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTE
T ss_pred             HHHHHHcCCCCeEEEecchhcCC--HHHHHHHHHHHHhc-----cccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCe
Confidence            11122233334556666544322  12355555443221     124677999999999999999999999999999999


Q ss_pred             eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 018543          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~  239 (354)
                      .||++||+.+++.++++|||..+.|++|+.+++..++.+++..++..+++++++.|+..++||+|+|+++||.+...+
T Consensus       147 ~~il~tn~~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~~  224 (239)
T d1njfa_         147 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG  224 (239)
T ss_dssp             EEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCccccChhHhhhhcccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998765443

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-39  Score=282.00  Aligned_cols=235  Identities=40%  Similarity=0.710  Sum_probs=180.0

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhcCC-CCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      |+|||||++|+|++|++++++.|+.++.++. .||++|+||||+||||+|+++|++++++.......+...+.  .. +.
T Consensus         1 W~eky~P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~--~~-~~   77 (252)
T d1sxje2           1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV--TA-SN   77 (252)
T ss_dssp             CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred             CCcccCCCCHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCcccccccccccccc--cc-cc
Confidence            9999999999999999999999999998765 45699999999999999999999997766544443333222  11 11


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCC-----CCCCCceEEEEeCCCcCCHHHHHHHHHHHhh
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDT-----KGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~  156 (354)
                      ....+.......+......+.+........+..+..........     ...+..++++|||+|.++.+.++.|++.+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~  157 (252)
T d1sxje2          78 RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK  157 (252)
T ss_dssp             -----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred             chhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchhhhccccc
Confidence            11233344455566677666666555556666665544433311     1235678999999999999999999999999


Q ss_pred             ccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543          157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEKSNRSLRRAILSFETC  235 (354)
Q Consensus       157 ~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~-~~~l~~i~~~s~gd~R~ai~~L~~~  235 (354)
                      ++.++.||++||+.++++++++|||..|+|++|+.+++.++|.+++.++++.++ +++++.|+..++||+|+|++.||.+
T Consensus       158 ~~~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~  237 (252)
T d1sxje2         158 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM  237 (252)
T ss_dssp             STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred             ccccccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999775 7889999999999999999999998


Q ss_pred             HhcCC
Q 018543          236 RVQQY  240 (354)
Q Consensus       236 ~~~~~  240 (354)
                      +..++
T Consensus       238 ~~~~~  242 (252)
T d1sxje2         238 ALNNE  242 (252)
T ss_dssp             HHTTT
T ss_pred             HHcCC
Confidence            87654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.8e-39  Score=278.30  Aligned_cols=209  Identities=41%  Similarity=0.679  Sum_probs=175.6

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      +|+|||+|++|+|++||+++++.|+.|++.++.||+||+||||+||||+|+++|+++.+....                 
T Consensus        13 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~-----------------   75 (231)
T d1iqpa2          13 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWR-----------------   75 (231)
T ss_dssp             CHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHH-----------------
T ss_pred             hHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhcccC-----------------
Confidence            799999999999999999999999999999999999999999999999999999988543211                 


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCce
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~  161 (354)
                                ..+++++.++....  ..+++...........   ......|+++||+|.+....++.|++.++++..++
T Consensus        76 ----------~~~~e~n~s~~~~~--~~~~~~~~~~~~~~~~---~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~  140 (231)
T d1iqpa2          76 ----------HNFLELNASDERGI--NVIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNV  140 (231)
T ss_dssp             ----------HHEEEEETTCHHHH--HTTHHHHHHHHHSCCG---GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTE
T ss_pred             ----------CCeeEEecCcccch--hHHHHHHHHHHhhhhc---cCCCceEEeehhhhhcchhHHHHHhhhcccCCcce
Confidence                      11344444332211  1233444444333322   23467899999999999999999999999999999


Q ss_pred             eEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 018543          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP  241 (354)
Q Consensus       162 ~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~~~~~~  241 (354)
                      .+|+++|+.++++++++|||..+.|++++..++..+|++++.++++.+++++++.|++.++||+|+|++.||.+......
T Consensus       141 ~~i~~~n~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~gdiR~ai~~Lq~~~~~~~~  220 (231)
T d1iqpa2         141 RFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKK  220 (231)
T ss_dssp             EEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSE
T ss_pred             EEEeccCChhhchHhHhCccccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988765444


Q ss_pred             C
Q 018543          242 F  242 (354)
Q Consensus       242 ~  242 (354)
                      +
T Consensus       221 i  221 (231)
T d1iqpa2         221 I  221 (231)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-38  Score=274.61  Aligned_cols=209  Identities=33%  Similarity=0.615  Sum_probs=169.7

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      ||+|||||++|+|++||+++++.|+.|++.++.||++|+||||+||||+++++++++.+.....                
T Consensus         1 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~----------------   64 (237)
T d1sxjd2           1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMK----------------   64 (237)
T ss_dssp             CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHT----------------
T ss_pred             CcchhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccc----------------
Confidence            7999999999999999999999999999999999999999999999999999999874322100                


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCC-------CCCCCceEEEEeCCCcCCHHHHHHHHHHH
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDT-------KGKRGFKVLVLNEVDKLSREAQHSLRRTM  154 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~viiiDE~d~l~~~~~~~Ll~~l  154 (354)
                                ....+.+.+.....  ..+...++.+........       .....++++||||+|.++...++.+++.+
T Consensus        65 ----------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~  132 (237)
T d1sxjd2          65 ----------SRILELNASDERGI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTM  132 (237)
T ss_dssp             ----------TSEEEECSSSCCCH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHH
T ss_pred             ----------cchhheeccccccc--hHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhcc
Confidence                      01122222222111  112222222222211100       12346789999999999999999999999


Q ss_pred             hhccCceeEEEEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 018543          155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (354)
Q Consensus       155 e~~~~~~~~Il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~  234 (354)
                      +.++.++.+|+++++..+++++++|||..++|++|+.+++.++|.+++.++++.+++++++.|++.++||+|+|++.||.
T Consensus       133 ~~~~~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~~  212 (237)
T d1sxjd2         133 ETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQS  212 (237)
T ss_dssp             HHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHhc
Q 018543          235 CRVQ  238 (354)
Q Consensus       235 ~~~~  238 (354)
                      ++..
T Consensus       213 ~~~~  216 (237)
T d1sxjd2         213 ASKG  216 (237)
T ss_dssp             THHH
T ss_pred             HHHh
Confidence            7654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-33  Score=235.28  Aligned_cols=199  Identities=21%  Similarity=0.219  Sum_probs=161.0

Q ss_pred             cCHHHHHHHHHHHhcCCCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCcee
Q 018543           17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (354)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   95 (354)
                      .++++.+.|...++.++.|| +||+||||+||||+|+.+|+.++|........        +..+..|..+....+.+..
T Consensus         6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~   77 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKS--------CGHCRGCQLMQAGTHPDYY   77 (207)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBC--------CSCSHHHHHHHHTCCTTEE
T ss_pred             ccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhccccccccccc--------ccccchhhhhhhccccccc
Confidence            57889999999999999999 99999999999999999999998876432221        1222222234444555566


Q ss_pred             eeCCCCCCC-cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCccc
Q 018543           96 ELSPSDAGF-QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT  174 (354)
Q Consensus        96 ~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~  174 (354)
                      .+.+++.+. .....++++.+.+....     ..++++|+||||+|.|+.+++++|+++||+|+.++.||++|+++++++
T Consensus        78 ~~~~~~~~~~i~~~~ir~l~~~~~~~~-----~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll  152 (207)
T d1a5ta2          78 TLAPEKGKNTLGVDAVREVTEKLNEHA-----RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLL  152 (207)
T ss_dssp             EECCCTTCSSBCHHHHHHHHHHTTSCC-----TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSC
T ss_pred             hhhhhhcccccccchhhHHhhhhhhcc-----ccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhh
Confidence            666554432 33345777766543332     246789999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 018543          175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (354)
Q Consensus       175 ~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~  233 (354)
                      ++|+|||+.+.|++++.+++..+|+.     ++.+++++++.+++.++||+|+|+++||
T Consensus       153 ~tI~SRc~~i~~~~~~~~~~~~~L~~-----~~~~~~~~~~~i~~~s~Gs~r~al~~le  206 (207)
T d1a5ta2         153 ATLRSRCRLHYLAPPPEQYAVTWLSR-----EVTMSQDALLAALRLSAGSPGAALALFQ  206 (207)
T ss_dssp             HHHHTTSEEEECCCCCHHHHHHHHHH-----HCCCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred             hhhcceeEEEecCCCCHHHHHHHHHH-----cCCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence            99999999999999999999999963     5668899999999999999999999876

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-33  Score=244.25  Aligned_cols=208  Identities=24%  Similarity=0.350  Sum_probs=154.4

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHHHHHhc-----------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE   64 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~-----------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~   64 (354)
                      ||+|||||++|+|++|+++.++.|+.|+..                 +..++++|+||||+||||+|+++|+++.++-  
T Consensus         3 lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~--   80 (253)
T d1sxja2           3 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI--   80 (253)
T ss_dssp             CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE--
T ss_pred             ccccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhh--
Confidence            799999999999999999999999998853                 3446799999999999999999999873321  


Q ss_pred             ccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCC---------CCCCCCCceEEE
Q 018543           65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI---------DTKGKRGFKVLV  135 (354)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~vii  135 (354)
                                                    ..++.++....  ..++..++.+......         ......+..+++
T Consensus        81 ------------------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  128 (253)
T d1sxja2          81 ------------------------------LEQNASDVRSK--TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVII  128 (253)
T ss_dssp             ------------------------------EEECTTSCCCH--HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEE
T ss_pred             ------------------------------hccccccchhh--HHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEE
Confidence                                          11111111100  0011111111100000         011235678999


Q ss_pred             EeCCCcCCHHHHHHHHHHHhhc-cCceeEEEEecCCC-cccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 018543          136 LNEVDKLSREAQHSLRRTMEKY-SASCRLILCCNSSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF  213 (354)
Q Consensus       136 iDE~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~-~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~  213 (354)
                      +||++.++...+..+...++.. .....+++++++.. ..++++++||..++|++|+.+++..+|+.++.++|+.+++++
T Consensus       129 ide~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~  208 (253)
T d1sxja2         129 MDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV  208 (253)
T ss_dssp             ECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTH
T ss_pred             eeeccccccchhhhhHHHhhhhcccccccccccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHH
Confidence            9999999887777666666542 23456777777554 577889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 018543          214 ATRLAEKSNRSLRRAILSFETCRVQQYPFK  243 (354)
Q Consensus       214 l~~i~~~s~gd~R~ai~~L~~~~~~~~~~~  243 (354)
                      ++.|+..++||+|+|++.||.++...+.++
T Consensus       209 l~~i~~~s~GDiR~ai~~L~~~~~~~~~i~  238 (253)
T d1sxja2         209 IDRLIQTTRGDIRQVINLLSTISTTTKTIN  238 (253)
T ss_dssp             HHHHHHHTTTCHHHHHHHHTHHHHHSSCCC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999887765544

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=3.5e-28  Score=208.39  Aligned_cols=186  Identities=20%  Similarity=0.271  Sum_probs=150.3

Q ss_pred             ccCCCCCCCcccCHHHHHHHHHHHhc-----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            6 KYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         6 kyrP~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      -.||++|+|++||+++++.|+.|++.     +..||+|||||||||||++|+++|+++.++.                  
T Consensus         2 ~~RP~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~------------------   63 (238)
T d1in4a2           2 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI------------------   63 (238)
T ss_dssp             TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE------------------
T ss_pred             CCCCCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCc------------------
Confidence            46999999999999999999998853     3567899999999999999999999873321                  


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc--
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--  158 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~--  158 (354)
                                    ..++......  ...+...+   ...        .+..++++||++.+++..++.++..++...  
T Consensus        64 --------------~~~~~~~~~~--~~~~~~~~---~~~--------~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~  116 (238)
T d1in4a2          64 --------------HVTSGPVLVK--QGDMAAIL---TSL--------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQID  116 (238)
T ss_dssp             --------------EEEETTTCCS--HHHHHHHH---HHC--------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCC
T ss_pred             --------------ccccCccccc--HHHHHHHH---Hhh--------ccCCchHHHHHHHhhhHHHhhcccceeeeeee
Confidence                          1222222111  11122222   221        234789999999999999999999887632  


Q ss_pred             ----------------CceeEEEEecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 018543          159 ----------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS  221 (354)
Q Consensus       159 ----------------~~~~~Il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s  221 (354)
                                      .++.+|++|+++..+.+++++||. .+.|++++.+++..+++.++..++..+++++++.+++.+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s  196 (238)
T d1in4a2         117 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRS  196 (238)
T ss_dssp             C---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTS
T ss_pred             eeecCcccccccccCCCCeEEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhC
Confidence                            357899999999999999999986 579999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 018543          222 NRSLRRAILSFETCR  236 (354)
Q Consensus       222 ~gd~R~ai~~L~~~~  236 (354)
                      +||+|.|++.|+.+.
T Consensus       197 ~gd~R~ai~~l~~~~  211 (238)
T d1in4a2         197 RGTPRIAIRLTKRVR  211 (238)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999998654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=7.5e-28  Score=206.46  Aligned_cols=187  Identities=23%  Similarity=0.294  Sum_probs=147.0

Q ss_pred             cCCCCCCCcccCHHHHHHHHHHHhc-----CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcc
Q 018543            7 YRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (354)
Q Consensus         7 yrP~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (354)
                      .||++|+|++||+++++.|+.+++.     ..++|+||+||||+||||+|+++|+++..+.                   
T Consensus         3 ~RP~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~-------------------   63 (239)
T d1ixsb2           3 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL-------------------   63 (239)
T ss_dssp             CCCCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCE-------------------
T ss_pred             cCCCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCe-------------------
Confidence            4999999999999999999988863     3467799999999999999999999873221                   


Q ss_pred             ccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc----
Q 018543           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY----  157 (354)
Q Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~----  157 (354)
                                   ...+.+....     ...........       .....++++||+|.+++..++.++..++..    
T Consensus        64 -------------~~~~~~~~~~-----~~~~~~~~~~~-------~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~  118 (239)
T d1ixsb2          64 -------------RVTSGPAIEK-----PGDLAAILANS-------LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDI  118 (239)
T ss_dssp             -------------EEEETTTCCS-----HHHHHHHHHTT-------CCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEE
T ss_pred             -------------EeccCCcccc-----chhhHHHHHhh-------ccCCCeeeeecccccchhHHHhhhhhhhhhhhhh
Confidence                         1112222111     11111112221       123479999999999999999999999753    


Q ss_pred             --------------cCceeEEEEecCCCc-ccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Q 018543          158 --------------SASCRLILCCNSSSK-VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN  222 (354)
Q Consensus       158 --------------~~~~~~Il~~~~~~~-l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~  222 (354)
                                    ..+..+|++|+++.. ..+.++++|..+.|.+|+.+++..++..++..+++.++++.++.+++.+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~  198 (239)
T d1ixsb2         119 VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSR  198 (239)
T ss_dssp             ECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTT
T ss_pred             hhccchhhhhcccCCCCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcC
Confidence                          234668888888775 55677778999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 018543          223 RSLRRAILSFETCRV  237 (354)
Q Consensus       223 gd~R~ai~~L~~~~~  237 (354)
                      ||+|.|++.|+.+..
T Consensus       199 gd~R~a~~~l~~~~~  213 (239)
T d1ixsb2         199 GTMRVAKRLFRRVRD  213 (239)
T ss_dssp             SSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999997654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=1.1e-26  Score=191.84  Aligned_cols=180  Identities=14%  Similarity=0.190  Sum_probs=130.5

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (354)
                      .+.++++++++..++++|+||||+|||++|..+++.+.....                          .+++.+++.++.
T Consensus         3 ~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~--------------------------~h~D~~~i~~~~   56 (198)
T d2gnoa2           3 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP--------------------------KASDVLEIDPEG   56 (198)
T ss_dssp             HHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC--------------------------CTTTEEEECCSS
T ss_pred             HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccc--------------------------CCCCEEEEeCCc
Confidence            567889999998888999999999999999999987632221                          134556666643


Q ss_pred             CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhc
Q 018543          102 AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (354)
Q Consensus       102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~  181 (354)
                      .. .....+|++.+.+.. .+.    .+++||+||||+|.|+.+++++|+++||+|+.++.||++|++++++++||+|||
T Consensus        57 ~~-I~Id~IR~i~~~~~~-~~~----~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC  130 (198)
T d2gnoa2          57 EN-IGIDDIRTIKDFLNY-SPE----LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRV  130 (198)
T ss_dssp             SC-BCHHHHHHHHHHHTS-CCS----SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred             CC-CCHHHHHHHHHHHhh-Ccc----cCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcce
Confidence            22 233568887766544 333    577899999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecCCCHHHHHHHHHHH----HHHc-----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018543          182 LNIRINSPTEEQIVKVLEFI----AKKE-----GLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (354)
Q Consensus       182 ~~i~~~~~~~~~~~~~L~~~----~~~~-----~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~~  236 (354)
                      +.+.|++|..  ...++...    .+..     +.....+++..+++...| ++++++.++...
T Consensus       131 ~~i~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ld~~~  191 (198)
T d2gnoa2         131 FRVVVNVPKE--FRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKLSG-LMESLKVLETEK  191 (198)
T ss_dssp             EEEECCCCHH--HHHHHHHHHTTHHHHCGGGGTCHHHHHHHHHHHHHHHHH-HHHHHHHSCHHH
T ss_pred             EEEeCCCchH--HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHhhC-HHHHHHHHHHHH
Confidence            9999987753  23333221    1111     112223445555555543 677776665443

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2e-19  Score=153.77  Aligned_cols=188  Identities=17%  Similarity=0.222  Sum_probs=125.5

Q ss_pred             CCCCCCCcccCHHHHHHHHHHHhc-----------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccc
Q 018543            8 RPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (354)
Q Consensus         8 rP~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~   75 (354)
                      -+.||+|++|.+.+++.|++.+..           .+.| .+||+||||||||++|+++|+++..+   .+.+++..+. 
T Consensus         7 ~~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~---~~~i~~~~l~-   82 (256)
T d1lv7a_           7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSDFV-   82 (256)
T ss_dssp             SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC---EEEECSCSST-
T ss_pred             CCCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCC---EEEEEhHHhh-
Confidence            456899999999999888765531           2333 39999999999999999999987211   1111111100 


Q ss_pred             cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-----------
Q 018543           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------  144 (354)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-----------  144 (354)
                                              +.+-......++++++.....         .+.||+|||+|.+..           
T Consensus        83 ------------------------~~~~g~~~~~l~~~f~~A~~~---------~P~il~iDeiD~l~~~r~~~~~~~~~  129 (256)
T d1lv7a_          83 ------------------------EMFVGVGASRVRDMFEQAKKA---------APCIIFIDEIDAVGRQRGAGLGGGHD  129 (256)
T ss_dssp             ------------------------TSCCCCCHHHHHHHHHHHHTT---------CSEEEEETTHHHHTCCCSTTSCCTTC
T ss_pred             ------------------------hcchhHHHHHHHHHHHHHHHc---------CCEEEEEEChhhhCccCCCCCCCCcH
Confidence                                    001111123466666655432         347999999987521           


Q ss_pred             ---HHHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 018543          145 ---EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR  216 (354)
Q Consensus       145 ---~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~  216 (354)
                         ...+.|+..++..  ..++.+|.+||+++.+.+++++  |+ ..|.|++|+.++...+++....+.++. ++..+..
T Consensus       130 ~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~  208 (256)
T d1lv7a_         130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAI  208 (256)
T ss_dssp             HHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcC-cccCHHH
Confidence               2345677777743  3456788899999999999985  77 579999999999999999887665544 3445778


Q ss_pred             HHHHcCC-CHHHHHHHHH
Q 018543          217 LAEKSNR-SLRRAILSFE  233 (354)
Q Consensus       217 i~~~s~g-d~R~ai~~L~  233 (354)
                      +++.+.| ..+..-++++
T Consensus       209 la~~t~G~s~adi~~l~~  226 (256)
T d1lv7a_         209 IARGTPGFSGADLANLVN  226 (256)
T ss_dssp             HHHTCTTCCHHHHHHHHH
T ss_pred             HHHhCCCCCHHHHHHHHH
Confidence            8887766 3333333443

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=3.1e-20  Score=158.17  Aligned_cols=183  Identities=19%  Similarity=0.293  Sum_probs=122.0

Q ss_pred             CCCCCcccCHHHHHHHHHHHh----------cC-CCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543           10 KTLDQVIVHQDIAQNLKKLVT----------EQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~----------~~-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~   77 (354)
                      .+|+|++|.+++++.|+..+.          .| ..| ++||+||||||||++|+++|+++..+   .+.+++..+.   
T Consensus         6 ~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~---~~~i~~~~l~---   79 (247)
T d1ixza_           6 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASGSDFV---   79 (247)
T ss_dssp             CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEHHHHH---
T ss_pred             CcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCC---EEEEEhHHhh---
Confidence            499999999999988877552          12 223 39999999999999999999976221   1111111110   


Q ss_pred             CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH-------------
Q 018543           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------------  144 (354)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~-------------  144 (354)
                                   +        ...+ .....++++++....         ..+.||+|||+|.+..             
T Consensus        80 -------------~--------~~~g-~~~~~l~~~f~~a~~---------~~p~Ii~iDeid~l~~~r~~~~~~~~~~~  128 (247)
T d1ixza_          80 -------------E--------MFVG-VGAARVRDLFETAKR---------HAPCIVFIDEIDAVGRKRGSGVGGGNDER  128 (247)
T ss_dssp             -------------H--------SCTT-HHHHHHHHHHHHHTT---------SSSEEEEEETHHHHHC---------CHHH
T ss_pred             -------------h--------cccc-HHHHHHHHHHHHHHH---------cCCEEEEEEChhhhCccCCCCCCCCcHHH
Confidence                         0        0011 111234555544322         2347999999987621             


Q ss_pred             -HHHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018543          145 -EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (354)
Q Consensus       145 -~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~  218 (354)
                       ...+.|+..|+...  .++.+|.+||+++.+.+++++  |+. .|+|++|+.++...+++..+.+.... ++..++.++
T Consensus       129 ~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~-~~~~~~~la  207 (247)
T d1ixza_         129 EQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLA  207 (247)
T ss_dssp             HHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCc-cccCHHHHH
Confidence             13556777787543  345677789999999999984  774 89999999999999999888655443 233478888


Q ss_pred             HHcCC----CHHHHHH
Q 018543          219 EKSNR----SLRRAIL  230 (354)
Q Consensus       219 ~~s~g----d~R~ai~  230 (354)
                      +.+.|    |++.+++
T Consensus       208 ~~t~g~s~~di~~lv~  223 (247)
T d1ixza_         208 KRTPGFVGADLENLLN  223 (247)
T ss_dssp             HTCTTCCHHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHH
Confidence            88876    5555444

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.79  E-value=7e-18  Score=146.17  Aligned_cols=216  Identities=16%  Similarity=0.216  Sum_probs=136.8

Q ss_pred             cccccCCCCCCCcccCHHHHHHHHHHHhc------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcc-cccccccccc
Q 018543            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEK-VKVENKTWKI   75 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~~~l~~~l~~------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~-~~~~~~~~~~   75 (354)
                      ....|+|+   +++|++..++.+..++..      +.+++++|+||||||||++++.+++.+.+..... +...+..+. 
T Consensus         9 l~~~y~p~---~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~-   84 (276)
T d1fnna2           9 FSPSYVPK---RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR-   84 (276)
T ss_dssp             GSTTCCCS---CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC-
T ss_pred             CCCCCCCC---CCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhh-
Confidence            45788895   468888877777776642      3445699999999999999999999875433211 111111000 


Q ss_pred             cCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHh
Q 018543           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME  155 (354)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le  155 (354)
                         ...  ..+...  ...........+.........+.+.....        ....++++|++|.+.....+.+...+.
T Consensus        85 ---~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~  149 (276)
T d1fnna2          85 ---NFT--AIIGEI--ARSLNIPFPRRGLSRDEFLALLVEHLRER--------DLYMFLVLDDAFNLAPDILSTFIRLGQ  149 (276)
T ss_dssp             ---SHH--HHHHHH--HHHTTCCCCSSCCCHHHHHHHHHHHHHHT--------TCCEEEEEETGGGSCHHHHHHHHHHTT
T ss_pred             ---hhh--hhhhhh--HHhhhhhhhhhccchhHHHHHHHHHHhhc--------ccccccchhHHHHhhhhhhhhHHHHHh
Confidence               000  000000  00000111111111112233333333332        234788899999998877776666653


Q ss_pred             h----ccCceeEEEEecCCC---cccHHHhhhcc--eeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH----
Q 018543          156 K----YSASCRLILCCNSSS---KVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEK----  220 (354)
Q Consensus       156 ~----~~~~~~~Il~~~~~~---~l~~~l~sR~~--~i~~~~~~~~~~~~~L~~~~~~~--~~~i~~~~l~~i~~~----  220 (354)
                      .    ......+|++++...   .+.+.+.+|+.  .+.|++++.+++..++.+++...  ...+++++++.+++.    
T Consensus       150 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~  229 (276)
T d1fnna2         150 EADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQ  229 (276)
T ss_dssp             CHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBS
T ss_pred             ccccccccceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhh
Confidence            3    234466777777653   67888999974  59999999999999999988763  345889999999885    


Q ss_pred             -----cCCCHHHHHHHHHHHHh
Q 018543          221 -----SNRSLRRAILSFETCRV  237 (354)
Q Consensus       221 -----s~gd~R~ai~~L~~~~~  237 (354)
                           +.||+|+++++++.+..
T Consensus       230 ~~~~~~~G~~R~a~~ll~~a~~  251 (276)
T d1fnna2         230 TPLDTNRGDARLAIDILYRSAY  251 (276)
T ss_dssp             STTCTTSCCHHHHHHHHHHHHH
T ss_pred             hhhhhcCCCHHHHHHHHHHHHH
Confidence                 47999999999987643

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.78  E-value=4.2e-18  Score=141.73  Aligned_cols=189  Identities=17%  Similarity=0.229  Sum_probs=130.4

Q ss_pred             CCCCcc-c--CHHHHHHHHHHHhcCC--CCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccc
Q 018543           11 TLDQVI-V--HQDIAQNLKKLVTEQD--CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (354)
Q Consensus        11 ~~~~~~-g--~~~~~~~l~~~l~~~~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
                      ||++++ |  +..+...++++++.-.  .+.++||||+|+|||++++++++++.......++++...+.           
T Consensus         8 tFdnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~-----------   76 (213)
T d1l8qa2           8 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA-----------   76 (213)
T ss_dssp             CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH-----------
T ss_pred             ChhhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHH-----------
Confidence            899976 4  7777888888876522  23399999999999999999999875443322222211110           


Q ss_pred             ccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--HHHHHHHHHHHhhc-cCcee
Q 018543           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKY-SASCR  162 (354)
Q Consensus        86 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--~~~~~~Ll~~le~~-~~~~~  162 (354)
                                ....   .........++...+.           ...+++|||+|.+.  +..+..|..++... ..+..
T Consensus        77 ----------~~~~---~~~~~~~~~~~~~~~~-----------~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~  132 (213)
T d1l8qa2          77 ----------QAMV---EHLKKGTINEFRNMYK-----------SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQ  132 (213)
T ss_dssp             ----------HHHH---HHHHHTCHHHHHHHHH-----------TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCE
T ss_pred             ----------HHHH---HHHHccchhhHHHHHh-----------hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccce
Confidence                      0000   0000000111221111           23799999999884  67788888888653 35677


Q ss_pred             EEEEecCCC----cccHHHhhhc---ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018543          163 LILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC  235 (354)
Q Consensus       163 ~Il~~~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L~~~  235 (354)
                      +|++++.+.    ...+.++||+   .++.++ |+.++..++|++.+...|+.++++++++|++++ .|+|.....|..+
T Consensus       133 iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~-~~~R~L~~~l~~l  210 (213)
T d1l8qa2         133 IILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLI  210 (213)
T ss_dssp             EEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHH
T ss_pred             EEEecCCcchhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CcHHHHHHHHHHh
Confidence            888887664    3678999997   467775 678889999999999999999999999999997 5899877777665


Q ss_pred             H
Q 018543          236 R  236 (354)
Q Consensus       236 ~  236 (354)
                      .
T Consensus       211 ~  211 (213)
T d1l8qa2         211 K  211 (213)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=6.9e-18  Score=144.93  Aligned_cols=175  Identities=19%  Similarity=0.276  Sum_probs=117.3

Q ss_pred             CCCCcccCHHHHHHHHHHHhc-----------C-CCCe-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccC
Q 018543           11 TLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (354)
Q Consensus        11 ~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~   77 (354)
                      +|+|+.|.+.+++.|+..+..           | ..|. +|||||||||||++++++|+++..+   .+.+++..+    
T Consensus         2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~---~~~i~~~~l----   74 (258)
T d1e32a2           2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLINGPEI----   74 (258)
T ss_dssp             CGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCE---EEEECHHHH----
T ss_pred             ChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCe---EEEEEchhh----
Confidence            689999999999988887531           3 2333 9999999999999999999976211   011111000    


Q ss_pred             CCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH-----------H
Q 018543           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------A  146 (354)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~-----------~  146 (354)
                                          . +.........++.+++.....         .+.||+|||+|.+...           .
T Consensus        75 --------------------~-~~~~g~~~~~l~~~f~~A~~~---------~p~il~iDeid~l~~~r~~~~~~~~~~~  124 (258)
T d1e32a2          75 --------------------M-SKLAGESESNLRKAFEEAEKN---------APAIIFIDELDAIAPKREKTHGEVERRI  124 (258)
T ss_dssp             --------------------T-TSCTTHHHHHHHHHHHHHHHT---------CSEEEEESSGGGTCCHHHHCCCTTHHHH
T ss_pred             --------------------c-ccccccHHHHHHHHHHHHHhc---------CCeEEEehhhhhhccCCCCCCCchHHHH
Confidence                                0 011111123455555544433         3479999999988422           2


Q ss_pred             HHHHHHHHhh--ccCceeEEEEecCCCcccHHHhh--hc-ceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 018543          147 QHSLRRTMEK--YSASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS  221 (354)
Q Consensus       147 ~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s  221 (354)
                      ...++..+..  ...++.+|++||+++.+.+++++  |+ ..|+|++|+.++...+++..+.+..+. ++..++.|++.+
T Consensus       125 ~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t  203 (258)
T d1e32a2         125 VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANET  203 (258)
T ss_dssp             HHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBC-TTCCHHHHHHHC
T ss_pred             HHHhccccccccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccc-cccchhhhhhcc
Confidence            3344444432  33456788899999999999998  77 479999999999999999877644332 222478899988


Q ss_pred             CC
Q 018543          222 NR  223 (354)
Q Consensus       222 ~g  223 (354)
                      .|
T Consensus       204 ~G  205 (258)
T d1e32a2         204 HG  205 (258)
T ss_dssp             TT
T ss_pred             cC
Confidence            77

>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=2.5e-18  Score=120.99  Aligned_cols=95  Identities=35%  Similarity=0.710  Sum_probs=90.5

Q ss_pred             CCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHhhHhhCCC
Q 018543          251 MDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELL--KRLDAEIKHEVCHWAAYYEHKMRRGN  328 (354)
Q Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~  328 (354)
                      |||+..+.++++.++..++++++.++|..+|+|+.+++||..|++.+..+++  ++.++..+.++++++++|++||..|.
T Consensus         2 pdWe~~i~~ia~~I~~eqsp~~L~~iR~~lYeLL~~cIpp~~Ilk~L~~~Ll~~~~~d~~lk~eii~~aa~yE~Rl~~Gs   81 (99)
T d1sxje1           2 PDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGN   81 (99)
T ss_dssp             CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHCCC
Confidence            6899999999999999999999999999999999999999999999999986  46788899999999999999999999


Q ss_pred             ChhHhHHHHHHHHHHHH
Q 018543          329 KAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       329 ~~~l~l~~~i~~~~~~~  345 (354)
                      ++.+|||+|+|++|+.+
T Consensus        82 K~IfHLEaFvAkfM~~l   98 (99)
T d1sxje1          82 KAIFHLEGFIAKVMCCL   98 (99)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhc
Confidence            99999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.76  E-value=3.5e-18  Score=148.95  Aligned_cols=221  Identities=16%  Similarity=0.184  Sum_probs=127.3

Q ss_pred             CcccccCCCCCCCcccCHHHHHHHH----HHHhcCCCC-----eEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccc
Q 018543            2 LWVDKYRPKTLDQVIVHQDIAQNLK----KLVTEQDCP-----HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (354)
Q Consensus         2 ~w~ekyrP~~~~~~~g~~~~~~~l~----~~l~~~~~~-----~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~   72 (354)
                      +|-++|+|.++   .|.+...+.|.    ..+..|..+     +++|+||||||||++++++++.+....... ......
T Consensus         8 ~l~~~~~P~~~---~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~-~~~~~~   83 (287)
T d1w5sa2           8 VFDENYIPPEL---RVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKE-GLTVKQ   83 (287)
T ss_dssp             GGSTTCCCSSC---SSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHT-TCCEEE
T ss_pred             hcCCccCCCCC---CCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccc-cCCcee
Confidence            46789999554   56544444444    334444333     267899999999999999999874321100 000000


Q ss_pred             ccccCCCcccccccccccc-CceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcC------CHH
Q 018543           73 WKIDAGSRNIDLELTTLSS-ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL------SRE  145 (354)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l------~~~  145 (354)
                      ...++.....  ....... ...........+.......+.+.+.....        ....++++||+|.+      ..+
T Consensus        84 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~iide~d~l~~~~~~~~~  153 (287)
T d1w5sa2          84 AYVNAFNAPN--LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE--------NHYLLVILDEFQSMLSSPRIAAE  153 (287)
T ss_dssp             EEEEGGGCCS--HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH--------TCEEEEEEESTHHHHSCTTSCHH
T ss_pred             eeeccccccc--hhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhc--------cCccccceeEEEEeccccccchh
Confidence            0000000000  0000000 00000111111111111222222222222        24478899998866      344


Q ss_pred             HHHHHHHHHhhc-----cCceeEEEEecCCC------cccHHHhhh-cceeeecCCCHHHHHHHHHHHHHHcC--CCCCH
Q 018543          146 AQHSLRRTMEKY-----SASCRLILCCNSSS------KVTEAIRSR-CLNIRINSPTEEQIVKVLEFIAKKEG--LQLPS  211 (354)
Q Consensus       146 ~~~~Ll~~le~~-----~~~~~~Il~~~~~~------~l~~~l~sR-~~~i~~~~~~~~~~~~~L~~~~~~~~--~~i~~  211 (354)
                      ....+...++..     .....+|++++...      ...+.+.+| +..++|++++.+++..+++.+++...  ..+++
T Consensus       154 ~~~~l~~l~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~  233 (287)
T d1w5sa2         154 DLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEP  233 (287)
T ss_dssp             HHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCH
T ss_pred             HHHHHHHHHHhcchhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCH
Confidence            555666666543     24567888887765      234566666 57899999999999999999987643  45899


Q ss_pred             HHHHHHHHHc------CCCHHHHHHHHHHHH
Q 018543          212 GFATRLAEKS------NRSLRRAILSFETCR  236 (354)
Q Consensus       212 ~~l~~i~~~s------~gd~R~ai~~L~~~~  236 (354)
                      ++++.+++.+      .||+|+|+++|+.+.
T Consensus       234 ~al~~ia~~~~~~~~~~gd~R~ai~~l~~a~  264 (287)
T d1w5sa2         234 RHLELISDVYGEDKGGDGSARRAIVALKMAC  264 (287)
T ss_dssp             HHHHHHHHHHCGGGTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence            9999999876      699999999998664

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=4.4e-18  Score=146.61  Aligned_cols=177  Identities=22%  Similarity=0.261  Sum_probs=111.9

Q ss_pred             CC-CCCCcccCHHHHHHHHHHHh-----------cCCC--CeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543            9 PK-TLDQVIVHQDIAQNLKKLVT-----------EQDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (354)
Q Consensus         9 P~-~~~~~~g~~~~~~~l~~~l~-----------~~~~--~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~   74 (354)
                      |. +|+|+.|.+++++.|...+.           .|-.  ..+||+||||||||++++++|+++..+   .+.+++..+ 
T Consensus         2 p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~---~~~~~~~~l-   77 (265)
T d1r7ra3           2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIKGPEL-   77 (265)
T ss_dssp             CCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCE---EEEECHHHH-
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCc---EEEEEHHHh-
Confidence            55 89999998887777766552           1322  239999999999999999999987221   111111000 


Q ss_pred             ccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHH---------
Q 018543           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE---------  145 (354)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~---------  145 (354)
                                             .. .........++.++......         .+.|++|||+|.+...         
T Consensus        78 -----------------------~~-~~~~~~~~~l~~~f~~A~~~---------~p~il~ideid~l~~~~~~~~~~~~  124 (265)
T d1r7ra3          78 -----------------------LT-MWFGESEANVREIFDKARQA---------APCVLFFDELDSIAKARGGNIGDGG  124 (265)
T ss_dssp             -----------------------HT-SCTTTHHHHHHHHHHHHHHT---------CSEEEEESSGGGTCCHHHHCCCTTH
T ss_pred             -----------------------hh-ccccchHHHHHHHHHHHHhc---------CCcceeHHhhhhccccCCCcCCCCc
Confidence                                   00 11111223456666554443         3479999999977421         


Q ss_pred             -----HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHhh--hcc-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 018543          146 -----AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (354)
Q Consensus       146 -----~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~  215 (354)
                           ..+.|+..|+..  ..++.+|++||+++.+++++++  |+. .|+|++|+.++...+++..+.+.... .+..++
T Consensus       125 ~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~l~  203 (265)
T d1r7ra3         125 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLE  203 (265)
T ss_dssp             HHHHHHHHHHHHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-----CCCCH
T ss_pred             HHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCch-hhhhHH
Confidence                 234566656432  2346788899999999999986  664 79999999999999998766432221 122356


Q ss_pred             HHHHHcCC
Q 018543          216 RLAEKSNR  223 (354)
Q Consensus       216 ~i~~~s~g  223 (354)
                      .+++.+.|
T Consensus       204 ~la~~t~g  211 (265)
T d1r7ra3         204 FLAKMTNG  211 (265)
T ss_dssp             HHHHHHCS
T ss_pred             HHHhcCCC
Confidence            67776554

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.1e-16  Score=136.44  Aligned_cols=198  Identities=14%  Similarity=0.198  Sum_probs=138.5

Q ss_pred             CCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccc
Q 018543            8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (354)
Q Consensus         8 rP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
                      +-..++.++|.++.+..+...+.....++.+|.||||+|||++++.+|+.+...+......+                  
T Consensus        13 ~~~~ld~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~------------------   74 (268)
T d1r6bx2          13 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMAD------------------   74 (268)
T ss_dssp             HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTT------------------
T ss_pred             HcCCCCcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCccccccc------------------
Confidence            34467889999999999999998777778999999999999999999998754332211111                  


Q ss_pred             ccccCceeeeCCC------CCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC---------HHHHHHHHH
Q 018543           88 TLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRR  152 (354)
Q Consensus        88 ~~~~~~~i~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~---------~~~~~~Ll~  152 (354)
                          ...+++...      .+...-...++.+++++..         .+.-|+||||++.+-         .++.+.|..
T Consensus        75 ----~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~---------~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp  141 (268)
T d1r6bx2          75 ----CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ---------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKP  141 (268)
T ss_dssp             ----CEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS---------SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSS
T ss_pred             ----ceeEEeeechHhccCccchhHHHHHHHHHHHhhc---------cCCceEEecchHHHhcCCCCCCccccHHHHhhH
Confidence                112222221      1111112234444444332         234688999999882         234555555


Q ss_pred             HHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcC-
Q 018543          153 TMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK----KEGLQLPSGFATRLAEKSN-  222 (354)
Q Consensus       153 ~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~----~~~~~i~~~~l~~i~~~s~-  222 (354)
                      .|..  +...+|.+|+..+     .-.+++.+|++.|.+.+|+.++...+|.....    ..++.++++++..++..+. 
T Consensus       142 ~L~r--g~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~r  219 (268)
T d1r6bx2         142 LLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK  219 (268)
T ss_dssp             CSSS--CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             HHhC--CCCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHh
Confidence            5553  4577888776543     45688999999999999999999999987543    4689999999999988653 


Q ss_pred             -----CCHHHHHHHHHHHHhc
Q 018543          223 -----RSLRRAILSFETCRVQ  238 (354)
Q Consensus       223 -----gd~R~ai~~L~~~~~~  238 (354)
                           .-+.+|+.+|+.+++.
T Consensus       220 yi~~~~~PdKAIdllDea~a~  240 (268)
T d1r6bx2         220 YINDRHLPDKAIDVIDEAGAR  240 (268)
T ss_dssp             HCTTSCTTHHHHHHHHHHHHH
T ss_pred             hccCCCCCcHHHHHHHHHHHH
Confidence                 4578999999977754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=9e-16  Score=134.89  Aligned_cols=193  Identities=19%  Similarity=0.309  Sum_probs=125.2

Q ss_pred             CcccCHHHHHHHHHHHhc--------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccc
Q 018543           14 QVIVHQDIAQNLKKLVTE--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~~--------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
                      .++||+++++.+...+..        .++. .++|+||+|+|||.+|+.+|+.+++.....+.++...+.  .+.     
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~--~~~-----   96 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM--EKH-----   96 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC--SSG-----
T ss_pred             eEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccc--cch-----
Confidence            468999998877766542        1222 389999999999999999999988776665666655443  100     


Q ss_pred             cccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc-------
Q 018543           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-------  157 (354)
Q Consensus        85 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~-------  157 (354)
                      ..        -.+..+..++.....-..+.+.+.. .        ++.||++||+|.++++.++.|++++++.       
T Consensus        97 ~~--------~~L~g~~~gyvG~~~~~~l~~~~~~-~--------p~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~g  159 (315)
T d1qvra3          97 AV--------SRLIGAPPGYVGYEEGGQLTEAVRR-R--------PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHG  159 (315)
T ss_dssp             GG--------GGC--------------CHHHHHHH-C--------SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSS
T ss_pred             hh--------hhhcCCCCCCcCcccCChHHHHHHh-C--------CCcEEEEehHhhcCHHHHHHHHHHhccCceeCCCC
Confidence            00        0011111111110001112222332 2        3489999999999999999999999763       


Q ss_pred             ----cCceeEEEEecCC--------------------------CcccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHH--
Q 018543          158 ----SASCRLILCCNSS--------------------------SKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK--  204 (354)
Q Consensus       158 ----~~~~~~Il~~~~~--------------------------~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~--  204 (354)
                          ..++.+|++||--                          ..+.|.+.+|+. ++.|.|++.+++.+++...+.+  
T Consensus       160 r~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~  239 (315)
T d1qvra3         160 RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLR  239 (315)
T ss_dssp             CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred             cEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHH
Confidence                1456677777731                          247788899986 5789999999999998754432  


Q ss_pred             -----cC--CCCCHHHHHHHHHHc------CCCHHHHHH
Q 018543          205 -----EG--LQLPSGFATRLAEKS------NRSLRRAIL  230 (354)
Q Consensus       205 -----~~--~~i~~~~l~~i~~~s------~gd~R~ai~  230 (354)
                           .+  +.+++++++.|++.+      ...+++++.
T Consensus       240 ~rl~~~~i~l~i~~~~~~~L~~~~y~~~~GAR~L~r~Ie  278 (315)
T d1qvra3         240 ARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQ  278 (315)
T ss_dssp             HHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHH
T ss_pred             HHHHhccccccccHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence                 23  367899999999863      235666554

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=6e-15  Score=129.80  Aligned_cols=189  Identities=20%  Similarity=0.261  Sum_probs=124.2

Q ss_pred             CCcccCHHHHHHHHHHHhc--------CCCC-eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc
Q 018543           13 DQVIVHQDIAQNLKKLVTE--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (354)
Q Consensus        13 ~~~~g~~~~~~~l~~~l~~--------~~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
                      ..++||+++++.+...+..        +++. .++|+||+|+|||.+|+.+|+.+..   ..+.+++..+.         
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~---~~i~~d~s~~~---------   89 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI---ELLRFDMSEYM---------   89 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC---EEEEEEGGGCS---------
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccC---CeeEecccccc---------
Confidence            3579999999888776641        2222 3999999999999999999997632   24444444433         


Q ss_pred             ccccccccCc-eeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhc-----
Q 018543           84 LELTTLSSAN-HVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-----  157 (354)
Q Consensus        84 ~~~~~~~~~~-~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~-----  157 (354)
                             ..+ .-.+.....+......-..+...+..         .++.|+++||+|.++++.++.|++++++.     
T Consensus        90 -------~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~---------~~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~  153 (315)
T d1r6bx3          90 -------ERHTVSRLIGAPPGYVGFDQGGLLTDAVIK---------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDN  153 (315)
T ss_dssp             -------SSSCCSSSCCCCSCSHHHHHTTHHHHHHHH---------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEET
T ss_pred             -------chhhhhhhcccCCCccccccCChhhHHHHh---------CccchhhhcccccccchHhhhhHHhhccceecCC
Confidence                   111 11222223332211111112222222         23489999999999999999999999762     


Q ss_pred             ------cCceeEEEEecCCC-------------------------cccHHHhhhcc-eeeecCCCHHHHHHHHHHHHHH-
Q 018543          158 ------SASCRLILCCNSSS-------------------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK-  204 (354)
Q Consensus       158 ------~~~~~~Il~~~~~~-------------------------~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~~~~~-  204 (354)
                            -.++.+|+++|-..                         .+.|.+..|+. ++.|.|++.+++.+++...+.+ 
T Consensus       154 ~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~  233 (315)
T d1r6bx3         154 NGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVEL  233 (315)
T ss_dssp             TTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHH
Confidence                  24677888887321                         25678888986 7999999999999887654432 


Q ss_pred             ------cC--CCCCHHHHHHHHHHc------CCCHHHHH
Q 018543          205 ------EG--LQLPSGFATRLAEKS------NRSLRRAI  229 (354)
Q Consensus       205 ------~~--~~i~~~~l~~i~~~s------~gd~R~ai  229 (354)
                            .+  +.+++++++.|++.+      ...+++++
T Consensus       234 ~~~l~~~~i~l~~~~~a~~~l~~~~yd~~~GaR~L~r~I  272 (315)
T d1r6bx3         234 QVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVI  272 (315)
T ss_dssp             HHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHH
T ss_pred             HHHHHhcCcchhhHHHHHHHHHHhCCCCCCChhhHHHHH
Confidence                  23  357899999998853      23555555

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=3.7e-15  Score=133.83  Aligned_cols=197  Identities=18%  Similarity=0.276  Sum_probs=132.3

Q ss_pred             CCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccc
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (354)
                      -.++-++|.+..++.+...+.....++.+|.||||+|||+++..+|..+........-.+.                   
T Consensus        19 g~ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~-------------------   79 (387)
T d1qvra2          19 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGK-------------------   79 (387)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTC-------------------
T ss_pred             CCCCCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCc-------------------
Confidence            4577799999999999998876666678999999999999999999987544322111111                   


Q ss_pred             ccCceeeeCCCC------CCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCC--------HHHHHHHHHHHh
Q 018543           90 SSANHVELSPSD------AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------REAQHSLRRTME  155 (354)
Q Consensus        90 ~~~~~i~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~--------~~~~~~Ll~~le  155 (354)
                         ..+.+....      +.......+..++.++....        +.-|+||||++.+-        .++.+.|...|.
T Consensus        80 ---~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~--------~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~  148 (387)
T d1qvra2          80 ---RIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQ--------GEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA  148 (387)
T ss_dssp             ---EEEEECC-----------CHHHHHHHHHHHHHTTC--------SSEEEEECCC-------------------HHHHH
T ss_pred             ---eEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCC--------CceEEEeccHHHHhcCCCCCCcccHHHHHHHHHh
Confidence               122222211      11111224455555544322        23579999999882        245677888887


Q ss_pred             hccCceeEEEEecCCC----cccHHHhhhcceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcC-----
Q 018543          156 KYSASCRLILCCNSSS----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSN-----  222 (354)
Q Consensus       156 ~~~~~~~~Il~~~~~~----~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~----~~~~i~~~~l~~i~~~s~-----  222 (354)
                      .  +...+|.+|+..+    .-.+++.+|++.|.+.+|+.++...+|......    .++.++++++..++..|.     
T Consensus       149 r--g~~~~I~~tT~~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~  226 (387)
T d1qvra2         149 R--GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITE  226 (387)
T ss_dssp             T--TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCS
T ss_pred             C--CCcceeeecCHHHHHHhcccHHHHHhcccccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhccccccc
Confidence            6  4578888887543    236789999999999999999999999876543    489999999999999653     


Q ss_pred             -CCHHHHHHHHHHHHhc
Q 018543          223 -RSLRRAILSFETCRVQ  238 (354)
Q Consensus       223 -gd~R~ai~~L~~~~~~  238 (354)
                       .-+.+||.+|+.+|+.
T Consensus       227 r~~PdKAidlld~a~a~  243 (387)
T d1qvra2         227 RRLPDKAIDLIDEAAAR  243 (387)
T ss_dssp             SCTHHHHHHHHHHHHHH
T ss_pred             ccChhhHHHHHHHHHHH
Confidence             4688999999987765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.60  E-value=1.5e-15  Score=133.62  Aligned_cols=155  Identities=15%  Similarity=0.281  Sum_probs=95.0

Q ss_pred             cccCHHHHHHHHHHHhc--------------CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543           15 VIVHQDIAQNLKKLVTE--------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus        15 ~~g~~~~~~~l~~~l~~--------------~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      ++||+++++.+..++..              ....++||+||||||||.+|+++|+.+..+   .+.+++..+.      
T Consensus        16 ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~---~~~i~~s~~~------   86 (309)
T d1ofha_          16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFT------   86 (309)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGGS------
T ss_pred             ccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccc---hhcccccccc------
Confidence            68999999988876621              123449999999999999999999986322   2222322221      


Q ss_pred             cccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH------------HHHH
Q 018543           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------EAQH  148 (354)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~------------~~~~  148 (354)
                                .       .+.........++.+.......    .....++.||+|||+|.+.+            ..++
T Consensus        87 ----------~-------~~~~~~~~~~~~~~~f~~a~~~----~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~  145 (309)
T d1ofha_          87 ----------E-------VGYVGKEVDSIIRDLTDSAGGA----IDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQR  145 (309)
T ss_dssp             ----------S-------CCSGGGSTTHHHHHHHHTTTTC----HHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHH
T ss_pred             ----------c-------ceeEeeeccccccccchhhhcc----cccccCCceEEehhhhhhhhhccCcccchhhhHHHH
Confidence                      0       0000111112233333211100    00001357999999999853            2567


Q ss_pred             HHHHHHhhc----------cCceeEEEE----ecCCCcccHHHhhhcc-eeeecCCCHHHHHHHHH
Q 018543          149 SLRRTMEKY----------SASCRLILC----CNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLE  199 (354)
Q Consensus       149 ~Ll~~le~~----------~~~~~~Il~----~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~  199 (354)
                      .|+..++..          ..+..||++    .+.+..+.|.++.|+. .+.|++|+..++.+++.
T Consensus       146 ~LL~~~dg~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~  211 (309)
T d1ofha_         146 DLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT  211 (309)
T ss_dssp             HHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred             HhhHHhcCCEEecCCeEEEccceeEEeccchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHH
Confidence            788888742          122334433    2455678999999985 69999999999999875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.57  E-value=1.3e-14  Score=123.06  Aligned_cols=154  Identities=18%  Similarity=0.322  Sum_probs=96.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCC--CCCcc---hhHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD--AGFQD---RYVVQ  111 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~---~~~i~  111 (354)
                      +||+||||||||++|+++|+++..+-                                +.++.++  .+...   ...++
T Consensus        43 vLL~GppGtGKT~la~alA~~~~~~~--------------------------------~~i~~~~~~~g~~~~~~~~~i~   90 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIAEESNFPF--------------------------------IKICSPDKMIGFSETAKCQAMK   90 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCSE--------------------------------EEEECGGGCTTCCHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHhhcccccc--------------------------------cccccccccccccccchhhhhh
Confidence            99999999999999999999862211                                1111110  11111   12355


Q ss_pred             HHHHHHHhcCCCCCCCCCCceEEEEeCCCcC----------CHHHHHHHHHHHhhccC---ceeEEEEecCCCcccHH-H
Q 018543          112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL----------SREAQHSLRRTMEKYSA---SCRLILCCNSSSKVTEA-I  177 (354)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l----------~~~~~~~Ll~~le~~~~---~~~~Il~~~~~~~l~~~-l  177 (354)
                      ++++....         ..+.|++|||+|.+          .....+.|+..++....   ++.+|.+||+++.+.++ +
T Consensus        91 ~if~~A~~---------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~  161 (246)
T d1d2na_          91 KIFDDAYK---------SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM  161 (246)
T ss_dssp             HHHHHHHT---------SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred             hhhhhhhh---------cccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhh
Confidence            55544433         24589999999865          23345677777765432   35567788887777654 6


Q ss_pred             hhhcc-eeeecCCC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-----CHHHHHHHHHHHH
Q 018543          178 RSRCL-NIRINSPT-EEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR-----SLRRAILSFETCR  236 (354)
Q Consensus       178 ~sR~~-~i~~~~~~-~~~~~~~L~~~~~~~~~~i~~~~l~~i~~~s~g-----d~R~ai~~L~~~~  236 (354)
                      ++|+. .|++|.++ .+++.+++...     ..+++.....+++...|     +++++++.++.+.
T Consensus       162 ~~rF~~~i~~P~~~~r~~il~~l~~~-----~~~~~~~~~~i~~~~~g~~~~~~ik~ll~~ie~a~  222 (246)
T d1d2na_         162 LNAFSTTIHVPNIATGEQLLEALELL-----GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL  222 (246)
T ss_dssp             TTTSSEEEECCCEEEHHHHHHHHHHH-----TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred             cCccceEEecCCchhHHHHHHHHHhc-----cCCChHHHHHHHHHcCCCccchhHHHHHHHHHHHH
Confidence            77775 58886654 45565555432     23567778888887766     4788887777553

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2.1e-14  Score=115.41  Aligned_cols=161  Identities=16%  Similarity=0.295  Sum_probs=110.2

Q ss_pred             ccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccc
Q 018543            6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (354)
Q Consensus         6 kyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
                      +-+...++.++|.++.++.+...+......|.+|.||||+|||++++.+|+.+...+....-.                 
T Consensus        15 ~a~~g~ld~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~-----------------   77 (195)
T d1jbka_          15 RAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLK-----------------   77 (195)
T ss_dssp             HHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGT-----------------
T ss_pred             HHHcCCCCCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHc-----------------
Confidence            334557788999999999999999877777899999999999999999999885433211111                 


Q ss_pred             ccccccCceeeeCCCC--CCCcc----hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCH--------HHHHHHH
Q 018543           86 LTTLSSANHVELSPSD--AGFQD----RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHSLR  151 (354)
Q Consensus        86 ~~~~~~~~~i~~~~~~--~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~--------~~~~~Ll  151 (354)
                           ....+++....  .+...    ...+..+++++....        +.-|++|||++.+-.        ++.+.|.
T Consensus        78 -----~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~--------~~iILfIDeih~l~~~g~~~g~~d~~~~Lk  144 (195)
T d1jbka_          78 -----GRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQE--------GNVILFIDELHTMVGAGKADGAMDAGNMLK  144 (195)
T ss_dssp             -----TCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHST--------TTEEEEEETGGGGTT------CCCCHHHHH
T ss_pred             -----CceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCC--------CcEEEEcchHHHHhcCCCCCCcccHHHHHH
Confidence                 11122222111  11211    123455555543322        236899999988832        2447788


Q ss_pred             HHHhhccCceeEEEEecCCC-----cccHHHhhhcceeeecCCCHHHHHHHH
Q 018543          152 RTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVL  198 (354)
Q Consensus       152 ~~le~~~~~~~~Il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~L  198 (354)
                      ..|+.  ....+|.+|+..+     .-.+++.+|++.|.+.+|+.++...+|
T Consensus       145 p~L~r--g~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~IL  194 (195)
T d1jbka_         145 PALAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHHHT--TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             HHHhC--CCceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCCCHHHHHHHh
Confidence            88875  5577888777543     457899999999999999999887765

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.48  E-value=6e-13  Score=118.19  Aligned_cols=180  Identities=17%  Similarity=0.173  Sum_probs=92.0

Q ss_pred             CCC-CCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccc---cccccccccCCCcccc
Q 018543            8 RPK-TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK---VENKTWKIDAGSRNID   83 (354)
Q Consensus         8 rP~-~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~---~~~~~~~~~~~~~~~~   83 (354)
                      ||. -|.+++||+++++.|.-.+-.....|+||.||||||||++|+.++.-| .+- ..+.   +.+.... ..+.....
T Consensus         1 ~~~~~f~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~iL-p~~-~~~~~~~~~~~~~~-~~~~~~~~   77 (333)
T d1g8pa_           1 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL-PEI-EAVEGCPVSSPNVE-MIPDWATV   77 (333)
T ss_dssp             CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS-CCE-EEETTCTTCCSSGG-GSCTTCCC
T ss_pred             CCCCChhhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHHhC-CCc-hhhccCccccCccc-cccchhhc
Confidence            454 599999999999876654432222469999999999999999999843 221 0000   0000000 00000000


Q ss_pred             ccccccccCce-eeeCCCCC--CCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc--
Q 018543           84 LELTTLSSANH-VELSPSDA--GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--  158 (354)
Q Consensus        84 ~~~~~~~~~~~-i~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~--  158 (354)
                      ........... ........  +......+......-........-......|+++||++.+++..+++|+..||+..  
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~v~  157 (333)
T d1g8pa_          78 LSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENV  157 (333)
T ss_dssp             SCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEE
T ss_pred             cccCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHHHHHHHHhhhhcCCeEE
Confidence            00000000000 11111000  00000011111111000000000001234799999999999999999999998642  


Q ss_pred             -----------CceeEEEEecCCC-cccHHHhhhcc-eeeecCCC
Q 018543          159 -----------ASCRLILCCNSSS-KVTEAIRSRCL-NIRINSPT  190 (354)
Q Consensus       159 -----------~~~~~Il~~~~~~-~l~~~l~sR~~-~i~~~~~~  190 (354)
                                 ..+.+|.++|..+ ++.+++.+|+. .+.+..+.
T Consensus       158 i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~  202 (333)
T d1g8pa_         158 VERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPR  202 (333)
T ss_dssp             ECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCC
T ss_pred             ecccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcc
Confidence                       2344444455433 79999999996 46776654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.47  E-value=3.5e-12  Score=107.79  Aligned_cols=192  Identities=16%  Similarity=0.152  Sum_probs=119.5

Q ss_pred             CcccCHHHHHHHHHHHhc--CCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccccccccccc
Q 018543           14 QVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS   91 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (354)
                      |+||+....+.+...++.  ....+++|+||+||||+++|+++...-.......+.+++....                 
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~-----------------   63 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP-----------------   63 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC-----------------
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhh-----------------
Confidence            578887766665555543  1222499999999999999999976432222122222211100                 


Q ss_pred             CceeeeCCCCCCCcchhHHHHHHHHHHhcCC-CCCC--------CCCCceEEEEeCCCcCCHHHHHHHHHHHhhcc----
Q 018543           92 ANHVELSPSDAGFQDRYVVQEVIKEMAKNRP-IDTK--------GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----  158 (354)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~--------~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~----  158 (354)
                                    .......++   ..... +...        ...+...++|||+|.|+...|..|++.+++..    
T Consensus        64 --------------~~~~~~~lf---g~~~~~~~~~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~  126 (247)
T d1ny5a2          64 --------------RDIFEAELF---GYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRL  126 (247)
T ss_dssp             --------------HHHHHHHHH---CBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCB
T ss_pred             --------------hcccHHHhc---CcccCCcCCcccccCCHHHccCCCEEEEeChHhCCHHHHHHHHHHHHhCCEEEC
Confidence                          000000110   00000 0000        01123589999999999999999999997521    


Q ss_pred             -------CceeEEEEecCCC-------cccHHHhhhcc--eeeecCCC--HHHHHHHHHHHH----HHcCC---CCCHHH
Q 018543          159 -------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIA----KKEGL---QLPSGF  213 (354)
Q Consensus       159 -------~~~~~Il~~~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~~L~~~~----~~~~~---~i~~~~  213 (354)
                             .++++|++++.+.       .+.+.+..|+.  .|.+||+.  .+++..++...+    .+.+.   .+++++
T Consensus       127 ~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~a  206 (247)
T d1ny5a2         127 GGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSA  206 (247)
T ss_dssp             TCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHH
T ss_pred             CCCCceecCeEEEEecCCCHHHHHHcCCCcHHHHhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHH
Confidence                   2467888887653       46677888864  57888874  467765555443    34443   478999


Q ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHhcC
Q 018543          214 ATRLAEKS-NRSLRRAILSFETCRVQQ  239 (354)
Q Consensus       214 l~~i~~~s-~gd~R~ai~~L~~~~~~~  239 (354)
                      +..+..+. .||+|+..+.++.++...
T Consensus       207 l~~L~~~~WPGNl~EL~~~l~~a~~~~  233 (247)
T d1ny5a2         207 QELLLSYPWYGNVRELKNVIERAVLFS  233 (247)
T ss_dssp             HHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence            99998875 899999999999877553

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.47  E-value=3.6e-13  Score=120.18  Aligned_cols=176  Identities=16%  Similarity=0.212  Sum_probs=106.5

Q ss_pred             CcccCHHHHHHHHHHHh------------------------------cCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCC
Q 018543           14 QVIVHQDIAQNLKKLVT------------------------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA   63 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~------------------------------~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~   63 (354)
                      .++||+++++.+..++.                              ...+.++||.||+|||||.+|+.+|+.+   +.
T Consensus        18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~---~~   94 (364)
T d1um8a_          18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL---DI   94 (364)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT---TC
T ss_pred             eecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhc---cc
Confidence            37899999888766552                              1233449999999999999999999864   11


Q ss_pred             cccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCc--
Q 018543           64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK--  141 (354)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~--  141 (354)
                      ..+.++...|.                .   ..+...+.    ...+++++..    .+... ...++.++++||++.  
T Consensus        95 ~~ir~D~s~~~----------------e---~gyvg~dv----~~~i~~l~~~----~~~~v-~~~~~~iv~lDEieK~~  146 (364)
T d1um8a_          95 PIAISDATSLT----------------E---AGYVGEDV----ENILTRLLQA----SDWNV-QKAQKGIVFIDEIDKIS  146 (364)
T ss_dssp             CEEEEEGGGCC---------------------------C----THHHHHHHHH----TTTCH-HHHTTSEEEEETGGGC-
T ss_pred             ceeehhhhhcc----------------c---chhhHhhh----ccchhhhhhh----chhHH-HHhhcccchhhhhhhhc
Confidence            23334443332                0   11111111    1234444322    11100 123457999999988  


Q ss_pred             ------------CCHHHHHHHHHHHhhcc-------------CceeEEEEecC---------------------------
Q 018543          142 ------------LSREAQHSLRRTMEKYS-------------ASCRLILCCNS---------------------------  169 (354)
Q Consensus       142 ------------l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~---------------------------  169 (354)
                                  ..+..++.|++.++...             .+..++.++|-                           
T Consensus       147 ~~s~~~~~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~  226 (364)
T d1um8a_         147 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT  226 (364)
T ss_dssp             -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred             cccccccccccccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhccccccccc
Confidence                        55678999999998411             11222222221                           


Q ss_pred             ----------------------CCcccHHHhhhcc-eeeecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHH
Q 018543          170 ----------------------SSKVTEAIRSRCL-NIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGF  213 (354)
Q Consensus       170 ----------------------~~~l~~~l~sR~~-~i~~~~~~~~~~~~~L~~-----------~~~~~~~--~i~~~~  213 (354)
                                            ...+.|.+..|.. ++.|++++.+++.+++..           ....+|+  .+++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a  306 (364)
T d1um8a_         227 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEA  306 (364)
T ss_dssp             CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHH
T ss_pred             ccccchhhhhhhhccccHHHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHH
Confidence                                  0025677888875 589999999999999852           1233465  568999


Q ss_pred             HHHHHHH
Q 018543          214 ATRLAEK  220 (354)
Q Consensus       214 l~~i~~~  220 (354)
                      ++.|++.
T Consensus       307 ~~~la~~  313 (364)
T d1um8a_         307 IKEIAQL  313 (364)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999995

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.27  E-value=6.6e-12  Score=111.69  Aligned_cols=74  Identities=16%  Similarity=-0.049  Sum_probs=51.3

Q ss_pred             eeEEEEecCCC-cccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHcCCCHHHHHHHHHH
Q 018543          161 CRLILCCNSSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA-EKSNRSLRRAILSFET  234 (354)
Q Consensus       161 ~~~Il~~~~~~-~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~~i~~~~l~~i~-~~s~gd~R~ai~~L~~  234 (354)
                      .++|++||+.. .++.+.|.++.++.++++.......++..++.++.+.++.+.+..+. ..+++|++.+++.+..
T Consensus       257 ~p~i~ttN~~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~~D~~~~i~~~~~  332 (362)
T d1svma_         257 PPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRIV  332 (362)
T ss_dssp             CCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHHHH
T ss_pred             CCceeecccccccccccccCceEEeecCCCcHHHHHHHHHHHhcccCCCCCHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            45888998654 34444555566666666666666778888888888888877776644 5666788888776543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.21  E-value=5.2e-10  Score=95.78  Aligned_cols=210  Identities=14%  Similarity=0.190  Sum_probs=116.4

Q ss_pred             CCcccccCCCCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCc
Q 018543            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (354)
Q Consensus         1 ~~w~ekyrP~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
                      |++..+ .+..-++++|.++.++.|...    ..++++++||+|+|||++++.+++.+....   ..++...+.......
T Consensus         1 ~~f~~~-p~~~~~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~---~~i~~~~~~~~~~~~   72 (283)
T d2fnaa2           1 MLFDTS-PKDNRKDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINELNLPY---IYLDLRKFEERNYIS   72 (283)
T ss_dssp             CTTCSS-CCCSGGGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHHTCCE---EEEEGGGGTTCSCCC
T ss_pred             CCcCCC-CCCChhhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHCCCCe---EEEEecccccccccc
Confidence            566664 235679999999988887653    335699999999999999999998763221   111111110000000


Q ss_pred             cc------ccc----------c-ccccc-------CceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEE
Q 018543           81 NI------DLE----------L-TTLSS-------ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVL  136 (354)
Q Consensus        81 ~~------~~~----------~-~~~~~-------~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viii  136 (354)
                      ..      +..          + .....       ..........   .....+.++++.+....       .+..++++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~-------~~~~~i~i  142 (283)
T d2fnaa2          73 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNR---KDRLSFANLLESFEQAS-------KDNVIIVL  142 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC--------CCCHHHHHHHHHHTC-------SSCEEEEE
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccch---hhhhHHHHHHHHHHhhc-------cccccccc
Confidence            00      000          0 00000       0000011000   01123555666555432       34578999


Q ss_pred             eCCCcCCHH----HHHHHHHHHhhccCceeEEEEecCCCcc---------c-HHHhhhcceeeecCCCHHHHHHHHHHHH
Q 018543          137 NEVDKLSRE----AQHSLRRTMEKYSASCRLILCCNSSSKV---------T-EAIRSRCLNIRINSPTEEQIVKVLEFIA  202 (354)
Q Consensus       137 DE~d~l~~~----~~~~Ll~~le~~~~~~~~Il~~~~~~~l---------~-~~l~sR~~~i~~~~~~~~~~~~~L~~~~  202 (354)
                      ||.+.+...    ....+....... ....+++++.....+         . +....+...+++++++.++..+++.+.+
T Consensus       143 d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~  221 (283)
T d2fnaa2         143 DEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF  221 (283)
T ss_dssp             ETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred             chhhhhcccchHHHHHHHHHHHHhh-hhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhh
Confidence            998776432    233333443333 345666665443211         1 1112234678999999999999999988


Q ss_pred             HHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 018543          203 KKEGLQLPSGFATRLAEKSNRSLRRAILSF  232 (354)
Q Consensus       203 ~~~~~~i~~~~l~~i~~~s~gd~R~ai~~L  232 (354)
                      ...++..+  .++.+.+.++|.+. .++.+
T Consensus       222 ~~~~~~~~--~~~~i~~~~~G~P~-~L~~~  248 (283)
T d2fnaa2         222 QEADIDFK--DYEVVYEKIGGIPG-WLTYF  248 (283)
T ss_dssp             HHHTCCCC--CHHHHHHHHCSCHH-HHHHH
T ss_pred             hhcCCCHH--HHHHHHHHhCCCHH-HHHHH
Confidence            87777654  47899999999986 44443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.13  E-value=1.4e-10  Score=100.53  Aligned_cols=126  Identities=20%  Similarity=0.230  Sum_probs=74.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~  116 (354)
                      +||+||||||||.+|+++|.++.... ..+.+.+..+                     +    +.+.......++++++.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~~~~-~~~~~~~~~~---------------------~----~~~~G~~e~~~~~~f~~  179 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALGGKD-KYATVRFGEP---------------------L----SGYNTDFNVFVDDIARA  179 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHHTTS-CCEEEEBSCS---------------------S----TTCBCCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHHhcCCC-CeEEEEhhHh---------------------h----hcccchHHHHHHHHHHH
Confidence            77799999999999999999874221 1111211111                     1    11112223457777766


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCCCcCCHH------------HHHHHHHHHhhc--cCceeEEEEecCCCcccHHHh----
Q 018543          117 MAKNRPIDTKGKRGFKVLVLNEVDKLSRE------------AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIR----  178 (354)
Q Consensus       117 ~~~~~~~~~~~~~~~~viiiDE~d~l~~~------------~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~----  178 (354)
                      ...           +.||||||+|.+...            ..+.|+..|+..  ..++.+|.+|| +..+.+++.    
T Consensus       180 a~~-----------~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN-~~~~~~~i~~~~~  247 (321)
T d1w44a_         180 MLQ-----------HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKIVELVK  247 (321)
T ss_dssp             HHH-----------CSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CCCCCHHHHHHHH
T ss_pred             Hhh-----------ccEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCC-Ccccccchhhhhh
Confidence            532           259999999998432            345666666532  23455555555 655555553    


Q ss_pred             --hhc-ceeeecCCCHHHHHHHHHH
Q 018543          179 --SRC-LNIRINSPTEEQIVKVLEF  200 (354)
Q Consensus       179 --sR~-~~i~~~~~~~~~~~~~L~~  200 (354)
                        .|+ ..+.+.+|+.++...+|..
T Consensus       248 r~~Rf~~~v~v~~pd~~~r~~il~~  272 (321)
T d1w44a_         248 EASRSNSTSLVISTDVDGEWQVLTR  272 (321)
T ss_dssp             HHHHHSCSEEEEECSSTTEEEEEEE
T ss_pred             ccCcccceeecCCCChHHHHHHHHH
Confidence              344 4688888887776666643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=4.8e-11  Score=98.65  Aligned_cols=148  Identities=15%  Similarity=0.243  Sum_probs=78.8

Q ss_pred             hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ceeeeCC
Q 018543           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELSP   99 (354)
Q Consensus        30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~   99 (354)
                      ..|..  +.|.||+|+||||++++++. +..++.+.+.+++....-..+..+   .+..+-+.          +++.+..
T Consensus        24 ~~Gei--~~liGpsGsGKSTLl~~i~G-l~~p~sG~I~i~g~~i~~~~~~~r---~ig~v~Q~~~l~~~~tv~eni~~~~   97 (232)
T d2awna2          24 HEGEF--VVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPAER---GVGMVFQSYALYPHLSVAENMSFGL   97 (232)
T ss_dssp             CTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEESSSCCTTSCGGGT---CEEEECSSCCC--------------
T ss_pred             cCCCE--EEEECCCCChHHHHHHHHhc-CCCCCCCEEEECCEECCCCchhhc---eeeeeccccccccchhHHHHHHHHH
Confidence            34444  89999999999999999998 788999999988876541111111   11111111          1111111


Q ss_pred             CCCCCcc---hhHHHHHHHHHH-----hcCCCCCCCC------------CCceEEEEeCC-CcCCHHHHHHHHHHHhhc-
Q 018543          100 SDAGFQD---RYVVQEVIKEMA-----KNRPIDTKGK------------RGFKVLVLNEV-DKLSREAQHSLRRTMEKY-  157 (354)
Q Consensus       100 ~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~~le~~-  157 (354)
                      .-.+...   ...+.++++.+.     ...+..+|+.            .+++++++||+ ..|++.....++..+.+. 
T Consensus        98 ~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~  177 (232)
T d2awna2          98 KLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH  177 (232)
T ss_dssp             -------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence            1111111   012333333221     1112223321            47899999998 789999888888877553 


Q ss_pred             -cCceeEEEEecCCCcccHHHhhhccee
Q 018543          158 -SASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       158 -~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                       ..+..+|++|++. .....+.+|+.++
T Consensus       178 ~~~g~tii~vTHd~-~~a~~~~dri~vm  204 (232)
T d2awna2         178 KRLGRTMIYVTHDQ-VEAMTLADKIVVL  204 (232)
T ss_dssp             HHSCCEEEEEESCH-HHHHHHCSEEEEE
T ss_pred             HhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence             2345566666554 4445666776443

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.12  E-value=3.2e-11  Score=100.13  Aligned_cols=139  Identities=14%  Similarity=0.217  Sum_probs=82.8

Q ss_pred             hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc----
Q 018543           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ----  105 (354)
Q Consensus        30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----  105 (354)
                      ..|..  +.|.||+|+||||+++++++ +..++.+.+.+++.+..-..+..            ..+.+.+++....    
T Consensus        30 ~~Ge~--~~liGpsGaGKSTLl~~i~G-l~~p~sG~I~i~g~~i~~~~~~~------------r~ig~v~Q~~~l~~~lt   94 (239)
T d1v43a3          30 KDGEF--LVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTYLPPKD------------RNISMVFQSYAVWPHMT   94 (239)
T ss_dssp             CTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGGG------------GTEEEEEC------CCC
T ss_pred             CCCCE--EEEECCCCChHHHHHHHHHc-CCCCCCCEEEEcceecccCCccc------------ceEEEEeechhhcccch
Confidence            34444  89999999999999999998 77899999999987664111111            1122222222111    


Q ss_pred             --------------chhH----HHHHHHHHH-----hcCCCCCCCC------------CCceEEEEeCC-CcCCHHHHHH
Q 018543          106 --------------DRYV----VQEVIKEMA-----KNRPIDTKGK------------RGFKVLVLNEV-DKLSREAQHS  149 (354)
Q Consensus       106 --------------~~~~----i~~~~~~~~-----~~~~~~~~~~------------~~~~viiiDE~-d~l~~~~~~~  149 (354)
                                    +...    +.++++.+.     ...+..+|+.            .+++++++||+ -.|++.....
T Consensus        95 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~  174 (239)
T d1v43a3          95 VYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA  174 (239)
T ss_dssp             HHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHH
Confidence                          1111    222332221     1112223321            57899999998 7899999988


Q ss_pred             HHHHHhhcc-C-ceeEEEEecCCCcccHHHhhhccee
Q 018543          150 LRRTMEKYS-A-SCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       150 Ll~~le~~~-~-~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +++.+.+.. . +..+|++|++.. ....+.+|..++
T Consensus       175 i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm  210 (239)
T d1v43a3         175 MRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVM  210 (239)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEE
T ss_pred             HHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence            888886652 2 455666666543 334566665443

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.12  E-value=5.2e-11  Score=99.00  Aligned_cols=144  Identities=15%  Similarity=0.266  Sum_probs=86.0

Q ss_pred             hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhH
Q 018543           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV  109 (354)
Q Consensus        30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  109 (354)
                      ++|..  +.|.||+|+||||+++++++ +..++.+.+.+++....  ......    ........+.+.+++....+..+
T Consensus        27 ~~Ge~--~~liG~sGaGKSTll~~i~g-l~~p~sG~I~~~g~~i~--~~~~~~----~~~~~~r~ig~v~Q~~~L~~~lt   97 (240)
T d1g2912          27 KDGEF--MILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVA--DPEKGI----FVPPKDRDIAMVFQSYALYPHMT   97 (240)
T ss_dssp             ETTCE--EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEEEE--EGGGTE----ECCGGGSSEEEECSCCCCCTTSC
T ss_pred             cCCCE--EEEECCCCChHHHHHHHHhc-CCCCCCCEEEECCEEec--ccchhh----hcccccccceecccchhhcchhh
Confidence            44544  89999999999999999998 77899999999887654  111000    00001123444444443333222


Q ss_pred             HHH----------------------HHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CcCCHHHHHH
Q 018543          110 VQE----------------------VIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (354)
Q Consensus       110 i~~----------------------~~~~~~~-----~~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (354)
                      +.+                      +++.+.-     ..+..+|+            ..+++++++||+ -.|++.....
T Consensus        98 V~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~  177 (240)
T d1g2912          98 VYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR  177 (240)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHH
T ss_pred             hhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHH
Confidence            222                      2222211     01111221            157899999998 7899999999


Q ss_pred             HHHHHhhcc-C-ceeEEEEecCCCcccHHHhhhcce
Q 018543          150 LRRTMEKYS-A-SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       150 Ll~~le~~~-~-~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +++.+.+.. . +..+|++|++.+ ....+.+|+.+
T Consensus       178 i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~v  212 (240)
T d1g2912         178 MRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAV  212 (240)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred             HHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEE
Confidence            888886642 2 456677666643 33456666543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.06  E-value=1.1e-10  Score=96.33  Aligned_cols=143  Identities=15%  Similarity=0.245  Sum_probs=82.6

Q ss_pred             hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhH
Q 018543           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV  109 (354)
Q Consensus        30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  109 (354)
                      ..|..  +.|.||+|+||||++++++. +..++.+.+.+++.+..  ....+.   .... ....+.+.+++....+..+
T Consensus        29 ~~Ge~--~~iiG~sGsGKSTLl~~i~g-l~~p~sG~I~~~g~~i~--~~~~~~---~~~~-r~~~ig~v~Q~~~l~~~~t   99 (230)
T d1l2ta_          29 KEGEF--VSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTN--DLDDDE---LTKI-RRDKIGFVFQQFNLIPLLT   99 (230)
T ss_dssp             CTTCE--EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECT--TCCHHH---HHHH-HHHHEEEECTTCCCCTTSC
T ss_pred             cCCCE--EEEECCCCCCcchhhHhccC-CCCCCcceeEECCEEcC--cCChhh---cchh-hcceEEEEecchhhCcCcc
Confidence            34444  89999999999999999987 77899999999887654  111100   0000 0011233222222211111


Q ss_pred             -------------------------HHHHHHHHH------hcCCCCCCC------------CCCceEEEEeCC-CcCCHH
Q 018543          110 -------------------------VQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSRE  145 (354)
Q Consensus       110 -------------------------i~~~~~~~~------~~~~~~~~~------------~~~~~viiiDE~-d~l~~~  145 (354)
                                               +.+.++.+.      ...|..+|+            ..+++++++||+ -.|++.
T Consensus       100 v~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~  179 (230)
T d1l2ta_         100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK  179 (230)
T ss_dssp             HHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred             HHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHH
Confidence                                     112222111      111112222            157899999998 789999


Q ss_pred             HHHHHHHHHhhcc--CceeEEEEecCCCcccHHHhhhcce
Q 018543          146 AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       146 ~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      .+..+++.+.+..  .+..+|++|++.+ +. .+.+|+.+
T Consensus       180 ~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a-~~~drv~~  217 (230)
T d1l2ta_         180 TGEKIMQLLKKLNEEDGKTVVVVTHDIN-VA-RFGERIIY  217 (230)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECSCHH-HH-TTSSEEEE
T ss_pred             HHHHHHHHHHHHHHhhCCEEEEECCCHH-HH-HhCCEEEE
Confidence            9999999887752  3567788877653 32 35555433

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=6e-11  Score=98.60  Aligned_cols=142  Identities=19%  Similarity=0.230  Sum_probs=84.6

Q ss_pred             hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhH
Q 018543           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV  109 (354)
Q Consensus        30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  109 (354)
                      .+|..  +.|.||+|+||||++++++. +..++.+.+.+++.++.  ....+   +....  ...+.+.+++.......+
T Consensus        29 ~~Ge~--~~iiG~sGsGKSTLl~~i~G-l~~p~sG~I~~~g~~i~--~~~~~---~~~~~--rr~ig~VfQ~~~l~~~~t   98 (240)
T d3dhwc1          29 PAGQI--YGVIGASGAGKSTLIRCVNL-LERPTEGSVLVDGQELT--TLSES---ELTKA--RRQIGMIFQHFNLLSSRT   98 (240)
T ss_dssp             CSSCE--EEEEESTTSSHHHHHHHHTT-SSCCSEEEEEETTEEEC--TTCHH---HHHHH--HHHEEECCSSCCCCTTSB
T ss_pred             cCCCE--EEEECCCCCCHHHHHHHHcC-CccccCCceEEcCeEee--eCChh---hhhhh--hccccccccccccCCCcc
Confidence            34544  89999999999999999998 77889999999887654  11110   00000  012344444333322222


Q ss_pred             ----------------------HHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHH
Q 018543          110 ----------------------VQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (354)
Q Consensus       110 ----------------------i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (354)
                                            +.++++.+.-.     .+..+|+            ..+++++++||+ ..|++..+..
T Consensus        99 v~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~  178 (240)
T d3dhwc1          99 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS  178 (240)
T ss_dssp             HHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhH
Confidence                                  23333332211     1111221            157899999998 8899999998


Q ss_pred             HHHHHhhcc-C-ceeEEEEecCCCcccHHHhhhcc
Q 018543          150 LRRTMEKYS-A-SCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       150 Ll~~le~~~-~-~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      +++.+.+.. . +..+|++|++. .....+.+|+.
T Consensus       179 i~~~l~~l~~~~g~tvi~vTHdl-~~~~~~~dri~  212 (240)
T d3dhwc1         179 ILELLKDINRRLGLTILLITHEM-DVVKRICDCVA  212 (240)
T ss_dssp             HHHHHHHHHHHHCCEEEEEBSCH-HHHHHHCSEEE
T ss_pred             HHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEE
Confidence            888886643 2 34555555554 44456677754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.05  E-value=7.3e-11  Score=97.25  Aligned_cols=137  Identities=13%  Similarity=0.222  Sum_probs=86.2

Q ss_pred             hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhH
Q 018543           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV  109 (354)
Q Consensus        30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  109 (354)
                      .+|..  +.|.||+|+||||+++++++ +..++.+.+.+++.+..  ....        .  ...+.+.+++.......+
T Consensus        24 ~~Ge~--~~liGpsGaGKSTll~~l~G-l~~p~sG~I~~~G~~i~--~~~~--------~--~r~ig~v~Q~~~l~~~~t   88 (229)
T d3d31a2          24 ESGEY--FVILGPTGAGKTLFLELIAG-FHVPDSGRILLDGKDVT--DLSP--------E--KHDIAFVYQNYSLFPHMN   88 (229)
T ss_dssp             CTTCE--EEEECCCTHHHHHHHHHHHT-SSCCSEEEEEETTEECT--TSCH--------H--HHTCEEECTTCCCCTTSC
T ss_pred             CCCCE--EEEECCCCCcHHHHHHHHhc-CcCCCCCEEEEccEecc--ccch--------h--HhcceeeccccccCcccc
Confidence            34544  89999999999999999998 77899999999887654  1110        0  112445454444443333


Q ss_pred             HHHHHHHHHhcCC------------------------CCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          110 VQEVIKEMAKNRP------------------------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       110 i~~~~~~~~~~~~------------------------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                      +.+.+........                        ..+|+            ..+++++++||+ -.|++.....+++
T Consensus        89 V~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~  168 (229)
T d3d31a2          89 VKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE  168 (229)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHH
Confidence            3333322211110                        01111            258899999998 7899999988888


Q ss_pred             HHhhcc--CceeEEEEecCCCcccHHHhhhcc
Q 018543          153 TMEKYS--ASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       153 ~le~~~--~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .+.+..  .+..+|++|++.+ ....+.+|+.
T Consensus       169 ~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~  199 (229)
T d3d31a2         169 MLSVLHKKNKLTVLHITHDQT-EARIMADRIA  199 (229)
T ss_dssp             HHHHHHHHTTCEEEEEESCHH-HHHHHCSEEE
T ss_pred             HHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEE
Confidence            886642  3456777776654 3344566654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=1.1e-10  Score=97.42  Aligned_cols=136  Identities=18%  Similarity=0.195  Sum_probs=81.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~  116 (354)
                      +-|.||+|+||||+.+++++ +..++.+.+.+++.+..  ....         .....+.+.++.........+.+.+..
T Consensus        31 ~glvG~nGaGKSTLl~~l~G-~~~p~~G~i~i~G~~i~--~~~~---------~~~~~i~~vpq~~~~~~~ltv~e~l~~   98 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIIST-LIKPSSGIVTVFGKNVV--EEPH---------EVRKLISYLPEEAGAYRNMQGIEYLRF   98 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEETT--TCHH---------HHHTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCCCEEEECcEecc--cChH---------HHHhhEeEeeeccccCCCccHHHHHHH
Confidence            88999999999999999998 67888888888887543  1000         001124444444333332222222222


Q ss_pred             H------------------Hhc---------CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhh
Q 018543          117 M------------------AKN---------RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (354)
Q Consensus       117 ~------------------~~~---------~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~  156 (354)
                      +                  ...         ....+|+            ..+++++++||+ ..|++..+..+.+++.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~  178 (238)
T d1vpla_          99 VAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ  178 (238)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            1                  110         0001121            257899999997 88999998888888866


Q ss_pred             ccCceeEEEEecCCCcccHHHhhhccee
Q 018543          157 YSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       157 ~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      .......|++++|.-.....+.+|+.++
T Consensus       179 ~~~~g~tii~~tH~l~~~~~~~drv~vl  206 (238)
T d1vpla_         179 ASQEGLTILVSSHNMLEVEFLCDRIALI  206 (238)
T ss_dssp             HHHTTCEEEEEECCHHHHTTTCSEEEEE
T ss_pred             HHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            5433344444455444445667776443

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.04  E-value=6.5e-11  Score=98.99  Aligned_cols=153  Identities=10%  Similarity=0.115  Sum_probs=84.7

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccC----------ceeeeC
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELS   98 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~   98 (354)
                      +..|.+  +.|.||+|+||||+++++++ +..++.+.+.+++.++....+.......+....+.          +++.+.
T Consensus        29 i~~Gei--~~liGpnGaGKSTl~~~i~G-l~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~  105 (240)
T d1ji0a_          29 VPRGQI--VTLIGANGAGKTTTLSAIAG-LVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG  105 (240)
T ss_dssp             EETTCE--EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGG
T ss_pred             ECCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHH
Confidence            344554  88999999999999999998 77888999999887654111100000001111000          001111


Q ss_pred             CCCCCCcc--hhHHHHHHHHH---Hhc---CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhc
Q 018543           99 PSDAGFQD--RYVVQEVIKEM---AKN---RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY  157 (354)
Q Consensus        99 ~~~~~~~~--~~~i~~~~~~~---~~~---~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~  157 (354)
                      ........  ...+...+..+   ...   .+..+|+            ..+++++++||+ ..|++.....+++.+.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l  185 (240)
T d1ji0a_         106 AYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI  185 (240)
T ss_dssp             GTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHH
Confidence            10001011  01122222221   111   1112221            258899999998 889999999999998765


Q ss_pred             c-CceeEEEEecCCCcccHHHhhhcceee
Q 018543          158 S-ASCRLILCCNSSSKVTEAIRSRCLNIR  185 (354)
Q Consensus       158 ~-~~~~~Il~~~~~~~l~~~l~sR~~~i~  185 (354)
                      . .+..+|+++++.+. ...+.+|+.+++
T Consensus       186 ~~~g~til~~tH~l~~-~~~~~drv~vl~  213 (240)
T d1ji0a_         186 NQEGTTILLVEQNALG-ALKVAHYGYVLE  213 (240)
T ss_dssp             HHTTCCEEEEESCHHH-HHHHCSEEEEEE
T ss_pred             HhCCCEEEEEeCCHHH-HHHhCCEEEEEE
Confidence            3 34556666666543 346777765443

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.02  E-value=5.6e-11  Score=98.70  Aligned_cols=143  Identities=16%  Similarity=0.209  Sum_probs=83.0

Q ss_pred             hcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh-
Q 018543           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-  108 (354)
Q Consensus        30 ~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-  108 (354)
                      +.|..  +.|.||+|+||||+++++++ +..++.+.+.+++.+........       .......+.+.++++...+.. 
T Consensus        29 ~~Ge~--~~iiG~sGsGKSTll~~i~g-l~~p~~G~I~~~g~~i~~~~~~~-------~~~~rr~ig~vfQ~~~L~p~lt   98 (242)
T d1oxxk2          29 ENGER--FGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLI-------VPPEDRKIGMVFQTWALYPNLT   98 (242)
T ss_dssp             CTTCE--EEEECSCHHHHHHHHHHHHT-SSCCSEEEEEETTEEEEETTEES-------SCGGGSCEEEEETTSCCCTTSC
T ss_pred             CCCCE--EEEECCCCCcHHHHHHHHHc-CcCCCCceEEECCEEeecCchhh-------cchhhccceEEecccccccccc
Confidence            34544  89999999999999999998 77899999999988765111000       000011233333332222211 


Q ss_pred             ---------------------HHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CcCCHHHHHH
Q 018543          109 ---------------------VVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (354)
Q Consensus       109 ---------------------~i~~~~~~~~~~-----~~~~~~~------------~~~~~viiiDE~-d~l~~~~~~~  149 (354)
                                           .+.++++.+.-.     .+..+|+            ..+++++++||+ ..|++.....
T Consensus        99 v~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~  178 (242)
T d1oxxk2          99 AFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS  178 (242)
T ss_dssp             HHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred             HHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHH
Confidence                                 123333222111     1111221            157899999997 7889888888


Q ss_pred             HHHHHhhcc-C-ceeEEEEecCCCcccHHHhhhcce
Q 018543          150 LRRTMEKYS-A-SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       150 Ll~~le~~~-~-~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +++.+.+.. . +..+|++|++. .....+.+|+.+
T Consensus       179 i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~v  213 (242)
T d1oxxk2         179 ARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGV  213 (242)
T ss_dssp             HHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEE
T ss_pred             HHHHHHHHHhccCCEEEEEECCH-HHHHHhCCEEEE
Confidence            888876542 2 45566666654 333456666543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.99  E-value=1.3e-10  Score=96.19  Aligned_cols=134  Identities=14%  Similarity=0.233  Sum_probs=81.9

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchhH------
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV------  109 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------  109 (354)
                      .+.|.||+|+||||+++++++ +..++.+.+.+++.+...-.+..            ..+.+.+++....+..+      
T Consensus        26 ~~~liGpnGaGKSTll~~i~G-l~~p~~G~I~~~G~~i~~~~~~~------------r~ig~v~Q~~~l~~~ltV~enl~   92 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAG-IVKPDRGEVRLNGADITPLPPER------------RGIGFVPQDYALFPHLSVYRNIA   92 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCTTT------------SCCBCCCSSCCCCTTSCHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHc-CCCCCceEEEECCEECCcCCHHH------------cCceeeccchhhcccchhhHhhh
Confidence            367899999999999999998 77899999999987765211111            12333333322222111      


Q ss_pred             ----------HHHHHHHHHhcCCC---------CCCC------------CCCceEEEEeCC-CcCCHHHHHHHHHHHhhc
Q 018543          110 ----------VQEVIKEMAKNRPI---------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY  157 (354)
Q Consensus       110 ----------i~~~~~~~~~~~~~---------~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~~le~~  157 (354)
                                .++.+.++.....+         .+|+            ..+++++++||+ -.|++..+..+++.+.+.
T Consensus        93 ~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l  172 (240)
T d2onka1          93 YGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV  172 (240)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred             hhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHH
Confidence                      12222222222111         1121            157899999998 789999999888888664


Q ss_pred             cC--ceeEEEEecCCCcccHHHhhhcce
Q 018543          158 SA--SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       158 ~~--~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      ..  +..+|++|++.+. ...+.+|+.+
T Consensus       173 ~~~~g~tvi~vtHd~~~-~~~~adri~v  199 (240)
T d2onka1         173 QREFDVPILHVTHDLIE-AAMLADEVAV  199 (240)
T ss_dssp             HHHHTCCEEEEESCHHH-HHHHCSEEEE
T ss_pred             HHhcCCeEEEEeCCHHH-HHHhCCEEEE
Confidence            22  4556666666543 3556677643

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.1e-10  Score=97.39  Aligned_cols=133  Identities=22%  Similarity=0.266  Sum_probs=80.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcc----------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD----------  106 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------  106 (354)
                      +.+.||+|+||||+++++++ ++.+..+.+.+++.++.  ..+.      ..+  ...+.+.+++.....          
T Consensus        32 vaIvG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~--~~~~------~~l--r~~i~~v~Q~~~lf~~Ti~eNi~~~  100 (241)
T d2pmka1          32 IGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDLA--LADP------NWL--RRQVGVVLQDNVLLNRSIIDNISLA  100 (241)
T ss_dssp             EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEETT--TSCH------HHH--HHHEEEECSSCCCTTSBHHHHHCTT
T ss_pred             EEEECCCCCCHHHHHHHHHh-cCCCCCCEEEECCEEec--ccch------hhh--hceEEEEecccccCCcccccccccc
Confidence            99999999999999999998 77888899988887654  1110      000  011222222221111          


Q ss_pred             -----hhHHHHHHHHH-----HhcCC-----------CCCCC------------CCCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          107 -----RYVVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       107 -----~~~i~~~~~~~-----~~~~~-----------~~~~~------------~~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                           ...+.+..+..     ....+           ..+|+            ..+++|+++||+ ..|++.....+++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~  180 (241)
T d2pmka1         101 NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR  180 (241)
T ss_dssp             STTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHH
Confidence                 11122222111     01111           11221            157899999998 7899999999999


Q ss_pred             HHhhccCceeEEEEecCCCcccHHHhhhcc
Q 018543          153 TMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       153 ~le~~~~~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      .+.+..++..+|++|++.+.+ . ..+|+.
T Consensus       181 ~l~~l~~~~Tvi~itH~l~~~-~-~~D~i~  208 (241)
T d2pmka1         181 NMHKICKGRTVIIIAHRLSTV-K-NADRII  208 (241)
T ss_dssp             HHHHHHTTSEEEEECSSGGGG-T-TSSEEE
T ss_pred             HHHHHhCCCEEEEEECCHHHH-H-hCCEEE
Confidence            987766667788888887543 2 245543

>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.97  E-value=2.2e-09  Score=76.09  Aligned_cols=88  Identities=25%  Similarity=0.329  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhHhhCCCChhH
Q 018543          255 EFVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAAYYEHKMRRGNKAIF  332 (354)
Q Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  332 (354)
                      +.+.++++...+    +++.+++..+++++. +|+++.+|+..+++.+.+ .+++..+.+++..++++++||..|+++++
T Consensus         5 ~~I~~il~~~l~----~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~v~~~~~~~~~k~~ll~~la~~d~rL~~G~~e~i   80 (95)
T d1iqpa1           5 EDIREMMLLALK----GNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEII   80 (95)
T ss_dssp             HHHHHHHHHHHH----TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence            345666666666    789999999999965 699999999999988876 68889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHH
Q 018543          333 HLEAFVAKFMSIYK  346 (354)
Q Consensus       333 ~l~~~i~~~~~~~~  346 (354)
                      ||++++++++.+.+
T Consensus        81 QL~alla~~~~i~~   94 (95)
T d1iqpa1          81 QLEALLAQFTLIGK   94 (95)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987653

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.97  E-value=3.7e-10  Score=91.84  Aligned_cols=43  Identities=21%  Similarity=0.365  Sum_probs=35.6

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~   74 (354)
                      ++.|..  +.|.||+|+||||+.+++++ +..|..+.+.+++..+.
T Consensus        24 i~~Gei--~~l~G~NGsGKSTLl~~i~g-l~~p~~G~I~~~g~~i~   66 (200)
T d1sgwa_          24 IEKGNV--VNFHGPNGIGKTTLLKTIST-YLKPLKGEIIYNGVPIT   66 (200)
T ss_dssp             EETTCC--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEEGG
T ss_pred             EcCCCE--EEEECCCCChHHHHHHHHhc-ccccCCCEEEECCEehh
Confidence            345555  88999999999999999998 77888888888876543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.91  E-value=5.9e-10  Score=93.98  Aligned_cols=142  Identities=15%  Similarity=0.159  Sum_probs=82.8

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCcchh
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY  108 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  108 (354)
                      ++.|..  +.|.||+|+||||++++++. +..++.+.+.+++.++....+......         .+.+.+++.......
T Consensus        27 v~~Gei--~~liG~nGaGKSTLl~~i~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~---------gi~~v~Q~~~~~~~l   94 (254)
T d1g6ha_          27 VNKGDV--TLIIGPNGSGKSTLINVITG-FLKADEGRVYFENKDITNKEPAELYHY---------GIVRTFQTPQPLKEM   94 (254)
T ss_dssp             EETTCE--EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHH---------TEEECCCCCGGGGGS
T ss_pred             ECCCCE--EEEECCCCCcHHHHHHHHHC-CCcCCCcEEEECCEeccchhHHHHHHh---------cCCccCCccccCCCC
Confidence            344554  88999999999999999998 678888999998887651111110000         122222222111111


Q ss_pred             -----------------------------------HHHHHHHHHHhc-----CCCCCCC------------CCCceEEEE
Q 018543          109 -----------------------------------VVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVL  136 (354)
Q Consensus       109 -----------------------------------~i~~~~~~~~~~-----~~~~~~~------------~~~~~viii  136 (354)
                                                         .+.++++.+.-.     .+..+|+            ..+++++|+
T Consensus        95 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llil  174 (254)
T d1g6ha_          95 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM  174 (254)
T ss_dssp             BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             eeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhh
Confidence                                               122222221100     1111221            157899999


Q ss_pred             eCC-CcCCHHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543          137 NEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       137 DE~-d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      ||+ -.|++.....+++.+.+.. .+..+|+++++.+. ...+.+|+.+
T Consensus       175 DEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~-~~~~~Drv~v  222 (254)
T d1g6ha_         175 DEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYV  222 (254)
T ss_dssp             ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEE
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH-HHHhCCEEEE
Confidence            998 7899999988888886653 34556666555544 4567777644

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.91  E-value=7.4e-10  Score=93.32  Aligned_cols=151  Identities=13%  Similarity=0.177  Sum_probs=83.6

Q ss_pred             HhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc--cc-ccccccCceeeeCCCCCCCc
Q 018543           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID--LE-LTTLSSANHVELSPSDAGFQ  105 (354)
Q Consensus        29 l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~i~~~~~~~~~~  105 (354)
                      ++.|..  +.|.||+|+||||+++++++ +..++.+.+.+++.+.....+.....  .. .........+.+.+++....
T Consensus        25 i~~GEi--~~iiG~sGsGKSTLl~~i~G-l~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~  101 (258)
T d1b0ua_          25 ARAGDV--ISIIGSSGSGKSTFLRCINF-LEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW  101 (258)
T ss_dssp             ECTTCE--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCC
T ss_pred             EcCCCE--EEEECCCCCcHHHHHHHHHc-CccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhc
Confidence            344554  89999999999999999997 77888899988887653111100000  00 00000001122222222222


Q ss_pred             chhH-----------------------HHHHHHHH------HhcCCCCCCC------------CCCceEEEEeCC-CcCC
Q 018543          106 DRYV-----------------------VQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (354)
Q Consensus       106 ~~~~-----------------------i~~~~~~~------~~~~~~~~~~------------~~~~~viiiDE~-d~l~  143 (354)
                      ...+                       +.+.++.+      ....+..+|+            ..+++++|+||+ -.|+
T Consensus       102 ~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD  181 (258)
T d1b0ua_         102 SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD  181 (258)
T ss_dssp             TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSC
T ss_pred             cchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCC
Confidence            2111                       22222211      1111222332            157899999998 7899


Q ss_pred             HHHHHHHHHHHhhcc-CceeEEEEecCCCcccHHHhhhcce
Q 018543          144 REAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       144 ~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +..+..+++.+.+.. .+..+|++|++ -.....+.+|+.+
T Consensus       182 ~~~~~~i~~ll~~l~~~g~til~vtHd-l~~~~~~adri~v  221 (258)
T d1b0ua_         182 PELVGEVLRIMQQLAEEGKTMVVVTHE-MGFARHVSSHVIF  221 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEECSC-HHHHHHHCSEEEE
T ss_pred             HHHHHHHHHhhhhhcccCCceEEEeCC-HHHHHHhCCEEEE
Confidence            999988888886543 33456666544 4444677788754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.91  E-value=4.4e-10  Score=94.60  Aligned_cols=141  Identities=15%  Similarity=0.238  Sum_probs=79.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCcccc-ccccccccCceee-------eCCCCCCCcchh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID-LELTTLSSANHVE-------LSPSDAGFQDRY  108 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~-------~~~~~~~~~~~~  108 (354)
                      +.|.||+|+||||+++.+++ ++.+..+.+.+++.+..  ..+.... ..+..+.+...+.       +...........
T Consensus        44 iaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~--~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~  120 (253)
T d3b60a1          44 VALVGRSGSGKSTIASLITR-FYDIDEGHILMDGHDLR--EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE  120 (253)
T ss_dssp             EEEEECTTSSHHHHHHHHTT-TTCCSEEEEEETTEETT--TBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHH
T ss_pred             EEEECCCCChHHHHHHHHhc-ccCCCccEEEECCcccc--hhhhhhhhheEEEEeeccccCCcchhhhhhhcCcccCCHH
Confidence            99999999999999999998 77888899988887554  1110000 0011111111100       000000011111


Q ss_pred             HHHHHHH------HHHhcC----------CCCCCCC------------CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC
Q 018543          109 VVQEVIK------EMAKNR----------PIDTKGK------------RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (354)
Q Consensus       109 ~i~~~~~------~~~~~~----------~~~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~  159 (354)
                      .+.+.++      .+...+          +..+|+.            .+++|+++||+ ..|++.....+++.+.+...
T Consensus       121 ~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~  200 (253)
T d3b60a1         121 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK  200 (253)
T ss_dssp             HHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc
Confidence            1222111      111111          1112211            36799999998 78999999999999877666


Q ss_pred             ceeEEEEecCCCcccHHHhhhcc
Q 018543          160 SCRLILCCNSSSKVTEAIRSRCL  182 (354)
Q Consensus       160 ~~~~Il~~~~~~~l~~~l~sR~~  182 (354)
                      +..+|++|++.+.+ . ..+|+.
T Consensus       201 ~~Tvi~itH~l~~~-~-~~D~v~  221 (253)
T d3b60a1         201 NRTSLVIAHRLSTI-E-QADEIV  221 (253)
T ss_dssp             TSEEEEECSCGGGT-T-TCSEEE
T ss_pred             CCEEEEEECCHHHH-H-hCCEEE
Confidence            67788888776533 2 345543

>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=4.2e-09  Score=73.97  Aligned_cols=85  Identities=11%  Similarity=0.228  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHhhHhhCCCChhH
Q 018543          255 EFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--RLDAEIKHEVCHWAAYYEHKMRRGNKAIF  332 (354)
Q Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  332 (354)
                      +.+.++++.+.+    +++.++++.+.+++.+|+++.+|+..+++.+..  .+++..+.+++..+++++.||..|+++++
T Consensus         4 ~~i~~il~~~~~----~~f~~a~~~i~~l~~~Gys~~dIl~~l~~~vv~~~~i~~~~k~~i~~~la~~d~rL~~G~~e~l   79 (91)
T d1sxjd1           4 DILIEIVEKVKS----GDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHI   79 (91)
T ss_dssp             HHHHHHHHHHHS----CCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence            345566666665    789999999999999999999999999998776  57889999999999999999999999999


Q ss_pred             hHHHHHHHHHH
Q 018543          333 HLEAFVAKFMS  343 (354)
Q Consensus       333 ~l~~~i~~~~~  343 (354)
                      ||.+++++++.
T Consensus        80 QL~~lla~i~~   90 (91)
T d1sxjd1          80 QLLNLLVKISQ   90 (91)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999999875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.89  E-value=6.6e-09  Score=82.69  Aligned_cols=62  Identities=16%  Similarity=0.299  Sum_probs=37.4

Q ss_pred             CCceEEEEeCCCcC---CHHHHHHHHHHHhhccCceeEEEEecCCC--cccHHHhhhc--ceeeecCCCHH
Q 018543          129 RGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSRC--LNIRINSPTEE  192 (354)
Q Consensus       129 ~~~~viiiDE~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~~--~l~~~l~sR~--~~i~~~~~~~~  192 (354)
                      .+++++++||++..   .......+.+.+++++  +.+|++++...  .+...+..+.  .++...+.+.+
T Consensus        98 ~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~--~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~nrd  166 (178)
T d1ye8a1          98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPN--VNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRD  166 (178)
T ss_dssp             CTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTT--SEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTT
T ss_pred             cCCCceeecCCCccchhhHHHHHHHHHHhccCC--CEEEEEEccHHHHHhhceEEEEeCCEEEEECCccHH
Confidence            35689999998654   4567778888887643  55666665543  2333444432  45666555433

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=7.9e-10  Score=92.89  Aligned_cols=37  Identities=27%  Similarity=0.495  Sum_probs=33.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~   74 (354)
                      +.+.||+|+||||+++++++ ++.+..+.+.+++.+..
T Consensus        43 vaivG~sGsGKSTLl~li~g-l~~p~~G~I~i~g~~i~   79 (251)
T d1jj7a_          43 TALVGPNGSGKSTVAALLQN-LYQPTGGQLLLDGKPLP   79 (251)
T ss_dssp             EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEEGG
T ss_pred             EEEECCCCCcHHHHHHHHhc-ccCCCcCEEEECCEecc
Confidence            89999999999999999998 77888899988887654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.88  E-value=2.1e-10  Score=95.95  Aligned_cols=142  Identities=16%  Similarity=0.234  Sum_probs=77.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCC-ccccccccccccCcee-----eeC--CCCCCCcchh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-RNIDLELTTLSSANHV-----ELS--PSDAGFQDRY  108 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i-----~~~--~~~~~~~~~~  108 (354)
                      +.|.||+|+||||+++++++ ++.+..+.+.+++.+..--... -+.  .+..+.+...+     .-+  ..........
T Consensus        31 vaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~~r~--~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~  107 (242)
T d1mv5a_          31 IAFAGPSGGGKSTIFSLLER-FYQPTAGEITIDGQPIDNISLENWRS--QIGFVSQDSAIMAGTIRENLTYGLEGDYTDE  107 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSBSCEEETTEESTTTSCSCCTT--TCCEECCSSCCCCEEHHHHTTSCTTSCSCHH
T ss_pred             EEEECCCCCCHHHHHHHHHH-hhCCCCCEEEECCEEeccccHHHHHh--heEEEccccccCCcchhhheecccccccchh
Confidence            88999999999999999998 7788999999988765411110 000  11111111110     000  0000011111


Q ss_pred             HHHHHHHHHHhcCCC----------------CCCCC------------CCceEEEEeCC-CcCCHHHHHHHHHHHhhccC
Q 018543          109 VVQEVIKEMAKNRPI----------------DTKGK------------RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (354)
Q Consensus       109 ~i~~~~~~~~~~~~~----------------~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~  159 (354)
                      .+.+..+........                .+|+.            .+++|+++||+ ..|++.....+++.+.+...
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~  187 (242)
T d1mv5a_         108 DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK  187 (242)
T ss_dssp             HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC
Confidence            223333222111100                11210            37899999998 67777766677777766555


Q ss_pred             ceeEEEEecCCCcccHHHhhhcce
Q 018543          160 SCRLILCCNSSSKVTEAIRSRCLN  183 (354)
Q Consensus       160 ~~~~Il~~~~~~~l~~~l~sR~~~  183 (354)
                      +..+|++|++.+.+ . ..+|+.+
T Consensus       188 ~~Tvi~itH~l~~~-~-~~D~i~v  209 (242)
T d1mv5a_         188 GRTTLVIAHRLSTI-V-DADKIYF  209 (242)
T ss_dssp             TSEEEEECCSHHHH-H-HCSEEEE
T ss_pred             CCEEEEEECCHHHH-H-hCCEEEE
Confidence            67788887776432 2 2455443

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.84  E-value=5.1e-10  Score=94.07  Aligned_cols=132  Identities=20%  Similarity=0.281  Sum_probs=79.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCCCc-----------
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ-----------  105 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------  105 (354)
                      +.+.||+|+||||+++.+++ ++.+..+.+.+++.+..  ....      ..+  ...+.+.+++....           
T Consensus        47 vaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~--~~~~------~~l--r~~i~~v~Q~~~lf~~Ti~eNi~~g  115 (255)
T d2hyda1          47 VAFVGMSGGGKSTLINLIPR-FYDVTSGQILIDGHNIK--DFLT------GSL--RNQIGLVQQDNILFSDTVKENILLG  115 (255)
T ss_dssp             EEEECSTTSSHHHHHTTTTT-SSCCSEEEEEETTEEGG--GSCH------HHH--HHTEEEECSSCCCCSSBHHHHHGGG
T ss_pred             EEEECCCCCcHHHHHHHHHh-cCCccccccccCCEEcc--cCCH------HHh--hheeeeeeccccCCCCCHHHHHhcc
Confidence            99999999999999999998 77888888888887654  1110      000  01122222211110           


Q ss_pred             ----chhHHHHHHHHH-----HhcCCC-----------CCCCC------------CCceEEEEeCC-CcCCHHHHHHHHH
Q 018543          106 ----DRYVVQEVIKEM-----AKNRPI-----------DTKGK------------RGFKVLVLNEV-DKLSREAQHSLRR  152 (354)
Q Consensus       106 ----~~~~i~~~~~~~-----~~~~~~-----------~~~~~------------~~~~viiiDE~-d~l~~~~~~~Ll~  152 (354)
                          ....+.+.++..     ....+.           .+|+.            .+++|+|+||+ ..|++.....+++
T Consensus       116 ~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~  195 (255)
T d2hyda1         116 RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE  195 (255)
T ss_dssp             CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence                111122222211     111110           11210            37799999998 7899999999999


Q ss_pred             HHhhccCceeEEEEecCCCcccHHHhhhc
Q 018543          153 TMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (354)
Q Consensus       153 ~le~~~~~~~~Il~~~~~~~l~~~l~sR~  181 (354)
                      .+.+...+..+|++|++.+.+ . ..+|.
T Consensus       196 ~l~~l~~~~TvI~itH~~~~~-~-~~D~i  222 (255)
T d2hyda1         196 ALDVLSKDRTTLIVAHRLSTI-T-HADKI  222 (255)
T ss_dssp             HHHHHTTTSEEEEECSSGGGT-T-TCSEE
T ss_pred             HHHHHhcCCEEEEEeCCHHHH-H-hCCEE
Confidence            998776667788888776543 2 24554

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=3.6e-09  Score=87.78  Aligned_cols=55  Identities=16%  Similarity=0.166  Sum_probs=38.0

Q ss_pred             CceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhccee
Q 018543          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (354)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~~~i  184 (354)
                      +++++++||+ ..|++..+..+.+.+.+.......|++++|.-.....+.+|+.++
T Consensus       150 ~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl  205 (231)
T d1l7vc_         150 AGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLL  205 (231)
T ss_dssp             TCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEE
Confidence            5589999997 889999999998888765433444444444444455666776544

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.80  E-value=2.4e-07  Score=83.99  Aligned_cols=104  Identities=16%  Similarity=0.268  Sum_probs=68.0

Q ss_pred             ceEEEEeCCCcCC------------HHHHHHHHHHHhhcc----------CceeEEEEecCC-----CcccHHHhhhcc-
Q 018543          131 FKVLVLNEVDKLS------------REAQHSLRRTMEKYS----------ASCRLILCCNSS-----SKVTEAIRSRCL-  182 (354)
Q Consensus       131 ~~viiiDE~d~l~------------~~~~~~Ll~~le~~~----------~~~~~Il~~~~~-----~~l~~~l~sR~~-  182 (354)
                      ..++++||++...            ...+..++..++...          .+..+| ++...     ..+.|.+.-|+- 
T Consensus       250 ~~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i-~~~~~~~~~~~gliPEliGRlPi  328 (443)
T d1g41a_         250 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI-ASGAFQVARPSDLIPELQGRLPI  328 (443)
T ss_dssp             HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE-EEECCSSCCGGGSCHHHHTTCCE
T ss_pred             cCccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhc-cccchhhcccccchhhhccceEE
Confidence            3589999987652            335667777776421          122232 22222     368899999974 


Q ss_pred             eeeecCCCHHHHHHHHHH-----------HHHHcCCC--CCHHHHHHHHHHcC--------CCHHHHHHHHHHH
Q 018543          183 NIRINSPTEEQIVKVLEF-----------IAKKEGLQ--LPSGFATRLAEKSN--------RSLRRAILSFETC  235 (354)
Q Consensus       183 ~i~~~~~~~~~~~~~L~~-----------~~~~~~~~--i~~~~l~~i~~~s~--------gd~R~ai~~L~~~  235 (354)
                      ++.+.+++.+++.++|..           ....+|+.  +++++++.||+.+-        -.+|..-..+|.+
T Consensus       329 ~v~L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~  402 (443)
T d1g41a_         329 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERL  402 (443)
T ss_dssp             EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred             EEEccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHH
Confidence            689999999999999853           12235664  57999999988652        2466665555544

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.78  E-value=1.1e-07  Score=81.10  Aligned_cols=197  Identities=15%  Similarity=0.187  Sum_probs=99.5

Q ss_pred             CcccCHHHHHHHHHHHhc-C--CCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccc-cc--ccc
Q 018543           14 QVIVHQDIAQNLKKLVTE-Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI-DL--ELT   87 (354)
Q Consensus        14 ~~~g~~~~~~~l~~~l~~-~--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~   87 (354)
                      +++|.+.-++.+..++.. +  ....+.++|+.|+||||+|+.+.+.....  ....+++..|......... .+  ...
T Consensus        21 ~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~--~~~~f~~~~Wv~vs~~~~~~~l~~~~~   98 (277)
T d2a5yb3          21 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQL--IGINYDSIVWLKDSGTAPKSTFDLFTD   98 (277)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSST--BTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred             ceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhh--hhhcCceEEEEEecCCCCHHHHHHHHH
Confidence            467888888888777753 2  22238899999999999999998753111  0111222222100000000 00  000


Q ss_pred             c---cccCceeeeCCCCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEE
Q 018543           88 T---LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLI  164 (354)
Q Consensus        88 ~---~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~I  164 (354)
                      .   ........-.+..............+....         ..++-++|+|+++.  .....    .+..  .++++|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---------~~kr~LlVLDDv~~--~~~~~----~~~~--~~sril  161 (277)
T d2a5yb3          99 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALI---------DRPNTLFVFDDVVQ--EETIR----WAQE--LRLRCL  161 (277)
T ss_dssp             HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHT---------TSTTEEEEEEEECC--HHHHH----HHHH--TTCEEE
T ss_pred             HHHHHhcchhhcCCccchhhhhHHHHHHHHHHHh---------ccCCeeEecchhhH--Hhhhh----hhcc--cCceEE
Confidence            0   000000000001111100000111111111         23457899999973  22222    2222  345666


Q ss_pred             EEecCCCcccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Q 018543          165 LCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL-QLPSGFATRLAEKSNRSLRRAILS  231 (354)
Q Consensus       165 l~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~-~i~~~~l~~i~~~s~gd~R~ai~~  231 (354)
                      +||.+. .+...+.+++..+++++++.++..+.+...+-.... .-.++....|++.++|.+ -|+..
T Consensus       162 vTTR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlP-LAl~~  227 (277)
T d2a5yb3         162 VTTRDV-EISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP-ATLMM  227 (277)
T ss_dssp             EEESBG-GGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred             EEeehH-HHHHhcCCCCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCH-HHHHH
Confidence            666644 555566667778999999999999998754321111 112556788999999986 44444

>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=8.9e-08  Score=67.52  Aligned_cols=85  Identities=9%  Similarity=0.067  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhhHhhCCCChhH
Q 018543          256 FVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-R-LDAEIKHEVCHWAAYYEHKMRRGNKAIF  332 (354)
Q Consensus       256 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~il~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l  332 (354)
                      .+.++++.+.+    +++.++++.+++++. +|+++.+|+..+.+.+.+ . .++..+.+++..+++++.||..|+++++
T Consensus         5 ~I~~il~~~l~----~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~i~~~~~~~~~~k~~ll~~la~~e~rL~~G~~e~l   80 (95)
T d1sxjc1           5 DLKAVLKSILE----DDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQI   80 (95)
T ss_dssp             HHHHHHHHHHT----SCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHh----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence            45677777776    789999999999975 599999999999998877 2 3467889999999999999999999999


Q ss_pred             hHHHHHHHHHHH
Q 018543          333 HLEAFVAKFMSI  344 (354)
Q Consensus       333 ~l~~~i~~~~~~  344 (354)
                      ||.++++++...
T Consensus        81 QL~~lla~~~~~   92 (95)
T d1sxjc1          81 QGSAVIGAIKAS   92 (95)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=1.1e-07  Score=66.50  Aligned_cols=75  Identities=11%  Similarity=0.101  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHH
Q 018543          271 KRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLK--RLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY  345 (354)
Q Consensus       271 ~~~~~~~~~~~~l~-~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~  345 (354)
                      .++.++++.+.+++ ..|+++.+|+..+++.+.+  .+++..+.++++.++++++|+..|+++++||.+++++++.+.
T Consensus        13 ~~f~~a~~~l~~~l~~~Gys~~DIi~~l~~~i~~~~~~~e~~k~~il~~la~~~~rl~~G~~e~lQL~~lla~i~~i~   90 (92)
T d1sxjb1          13 SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLN   90 (92)
T ss_dssp             SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence            56778889898865 5799999999999998876  467889999999999999999999999999999999987653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=98.55  E-value=1.7e-07  Score=74.30  Aligned_cols=114  Identities=17%  Similarity=0.216  Sum_probs=68.8

Q ss_pred             HHHHHHHHhcCCCC-e-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCC
Q 018543           22 AQNLKKLVTEQDCP-H-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (354)
Q Consensus        22 ~~~l~~~l~~~~~~-~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (354)
                      ...|+.+++ |.+. + ++|+|||++|||+++.++++.+.+..                                +.++.
T Consensus        40 l~~l~~~l~-~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~v--------------------------------is~~N   86 (205)
T d1tuea_          40 LGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV--------------------------------ISFVN   86 (205)
T ss_dssp             HHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE--------------------------------CCCCC
T ss_pred             HHHHHHHHc-CCCCceEEEEECCCCccHHHHHHHHHHHhCCEE--------------------------------EeccC
Confidence            355666774 4433 3 99999999999999999998662210                                11111


Q ss_pred             CCCCCcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCcCCHHHHHH-HHHHHhhcc-------------CceeEEE
Q 018543          100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHS-LRRTMEKYS-------------ASCRLIL  165 (354)
Q Consensus       100 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~l~~~~~~~-Ll~~le~~~-------------~~~~~Il  165 (354)
                      +...  -         .+.        ...+.+++++||+......-.+. ++.+++..+             ..+++|+
T Consensus        87 ~~s~--F---------~Lq--------~l~~~kv~l~dD~t~~~~~~~d~~lK~ll~G~~vsvd~KhK~~vqi~~pPliI  147 (205)
T d1tuea_          87 STSH--F---------WLE--------PLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILL  147 (205)
T ss_dssp             SSSC--G---------GGG--------GGTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEE
T ss_pred             CCCC--c---------ccc--------cccCCeEEEEeccccchHHHHHHHHHhccCCCeeeeecccCCcccccCCCEEE
Confidence            0000  0         001        11344899999986554443344 455554311             2356888


Q ss_pred             EecCCC---cccHHHhhhcceeeec
Q 018543          166 CCNSSS---KVTEAIRSRCLNIRIN  187 (354)
Q Consensus       166 ~~~~~~---~l~~~l~sR~~~i~~~  187 (354)
                      ++|..-   .-.+.|.||..+++|+
T Consensus       148 TsN~~~~~~d~~~~L~sRi~~f~F~  172 (205)
T d1tuea_         148 TTNIHPAKDNRWPYLESRITVFEFP  172 (205)
T ss_dssp             EESSCTTSSSSCHHHHTSCEEEECC
T ss_pred             EcCCCCCccccchhhhheEEEEECC
Confidence            888653   4557899999999997

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=2.6e-08  Score=84.90  Aligned_cols=34  Identities=29%  Similarity=0.487  Sum_probs=29.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      +.|.||+|+||||+++++++ ++.+..+.+.++++
T Consensus        65 vaivG~nGsGKSTLl~~i~G-l~~p~~G~I~~~g~   98 (281)
T d1r0wa_          65 LAITGSTGSGKTSLLMLILG-ELEASEGIIKHSGR   98 (281)
T ss_dssp             EEEEESTTSSHHHHHHHHHT-SSCCSEEEEECCSC
T ss_pred             EEEECCCCChHHHHHHHHhC-CCcCCCcEEEECCE
Confidence            88999999999999999998 67788787777764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.37  E-value=1.1e-07  Score=80.64  Aligned_cols=49  Identities=29%  Similarity=0.553  Sum_probs=33.7

Q ss_pred             CCCcccCHHHHHHHHHHHh---cCCCCe-EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           12 LDQVIVHQDIAQNLKKLVT---EQDCPH-LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        12 ~~~~~g~~~~~~~l~~~l~---~~~~~~-~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      |++.-+++.+...+.....   .+..|. +||+|||||||||+|+++|+++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_           6 FTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             cChHHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            4444444555555544443   234455 999999999999999999998743

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=9.6e-07  Score=69.87  Aligned_cols=28  Identities=39%  Similarity=0.674  Sum_probs=24.5

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQVFGPG   62 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~   62 (354)
                      .|++|+||||+||||+++.+++.+....
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~   29 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            4699999999999999999999886543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=98.08  E-value=1.5e-05  Score=66.90  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=26.6

Q ss_pred             HHHHHHHhcCCCC-e-EEEeCCCCCcHHHHHHHHHHHh
Q 018543           23 QNLKKLVTEQDCP-H-LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        23 ~~l~~~l~~~~~~-~-~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ..|..++..+... + ++|+||+++|||+++.++++.+
T Consensus        91 ~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3455566443222 2 8999999999999999999854

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.07  E-value=1.4e-05  Score=60.85  Aligned_cols=22  Identities=36%  Similarity=0.554  Sum_probs=19.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++++||||+||||+|+.++...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999887654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.96  E-value=2e-06  Score=67.16  Aligned_cols=25  Identities=40%  Similarity=0.636  Sum_probs=22.8

Q ss_pred             CCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           34 CPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        34 ~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .|.++|+||||+||||+++.+++.+
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4569999999999999999999977

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.93  E-value=3.8e-06  Score=63.06  Aligned_cols=42  Identities=12%  Similarity=0.176  Sum_probs=27.0

Q ss_pred             CCCceEEEEeCCCcCCHHHHH--HHHHHHhhccCceeEEEEecCC
Q 018543          128 KRGFKVLVLNEVDKLSREAQH--SLRRTMEKYSASCRLILCCNSS  170 (354)
Q Consensus       128 ~~~~~viiiDE~d~l~~~~~~--~Ll~~le~~~~~~~~Il~~~~~  170 (354)
                      ..+.++||+||+|.+++....  .++..+... .+..+|+.|-.|
T Consensus        96 ~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~-~~~~~l~lTATP  139 (140)
T d1yksa1          96 VVNWEVIIMDEAHFLDPASIAARGWAAHRARA-NESATILMTATP  139 (140)
T ss_dssp             CCCCSEEEETTTTCCSHHHHHHHHHHHHHHHT-TSCEEEEECSSC
T ss_pred             ccceeEEEEccccccChhhHHHHHHHHHHhhC-CCCCEEEEEcCC
Confidence            356799999999999776433  334444433 356677666544

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=1.4e-05  Score=64.26  Aligned_cols=29  Identities=38%  Similarity=0.471  Sum_probs=23.9

Q ss_pred             CCCCe-EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           32 QDCPH-LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        32 ~~~~~-~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      +..|+ ++|.||+|+||||++-.+|..+..
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~   35 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ   35 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45567 889999999999998888887643

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=2.7e-06  Score=65.79  Aligned_cols=23  Identities=35%  Similarity=0.638  Sum_probs=21.6

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +++|+||||+||||+++.+|+.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999987

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=3.8e-06  Score=65.51  Aligned_cols=27  Identities=26%  Similarity=0.448  Sum_probs=23.5

Q ss_pred             CCCCe-EEEeCCCCCcHHHHHHHHHHHh
Q 018543           32 QDCPH-LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        32 ~~~~~-~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +..++ ++|+||||+||||+++.+++.+
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34456 8899999999999999999987

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.89  E-value=8.7e-05  Score=66.04  Aligned_cols=51  Identities=25%  Similarity=0.395  Sum_probs=40.2

Q ss_pred             CCCCCcccCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        10 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      .+++++--.+.....++.++.... .-+|++||.|+||||++.++.+++..+
T Consensus       135 ~~l~~LG~~~~~~~~l~~l~~~~~-GliLvtGpTGSGKSTTl~~~l~~~~~~  185 (401)
T d1p9ra_         135 LDLHSLGMTAHNHDNFRRLIKRPH-GIILVTGPTGSGKSTTLYAGLQELNSS  185 (401)
T ss_dssp             CCGGGSCCCHHHHHHHHHHHTSSS-EEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred             hhhhhhcccHHHHHHHHHHHhhhh-ceEEEEcCCCCCccHHHHHHhhhhcCC
Confidence            467787767888888888775322 239999999999999999999987544

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=3.1e-05  Score=67.90  Aligned_cols=41  Identities=17%  Similarity=0.277  Sum_probs=27.7

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCccc
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT  174 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~  174 (354)
                      +.+++||||+.+++......++.   ..+.++++|++.. +..++
T Consensus       261 ~~d~lIIDEaSmv~~~l~~~ll~---~~~~~~~lILvGD-~~QLp  301 (359)
T d1w36d1         261 HLDVLVVDEASMIDLPMMSRLID---ALPDHARVIFLGD-RDQLA  301 (359)
T ss_dssp             SCSEEEECSGGGCBHHHHHHHHH---TCCTTCEEEEEEC-TTSGG
T ss_pred             ccceeeehhhhccCHHHHHHHHH---HhcCCCEEEEECC-hhhcc
Confidence            46799999999998765444444   4456678887654 44443

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=5.1e-06  Score=66.23  Aligned_cols=36  Identities=25%  Similarity=0.270  Sum_probs=26.9

Q ss_pred             HHHHHhcCCCCe----EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           25 LKKLVTEQDCPH----LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        25 l~~~l~~~~~~~----~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      .+..+..++.+|    ++|+|+||+||||+|+.++..+..
T Consensus         6 ~~~~~~~~~~~~~g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3           6 KRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             HHHHHHSSSCSCCCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            344444444443    779999999999999999998743

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.80  E-value=0.00012  Score=62.90  Aligned_cols=38  Identities=21%  Similarity=0.373  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++....|..+++.+..  ++++||+|+||||++++++..+
T Consensus       153 ~~~~~~l~~~v~~~~n--ili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         153 EQAISAIKDGIAIGKN--VIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             HHHHHHHHHHHHHTCC--EEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHhCCC--EEEEeeccccchHHHHHHhhhc
Confidence            5666778888877754  9999999999999999998754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.79  E-value=4.8e-06  Score=65.77  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=21.5

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||||+||||+|+.||+.+
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            39999999999999999999976

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.76  E-value=7.3e-06  Score=63.98  Aligned_cols=23  Identities=26%  Similarity=0.648  Sum_probs=21.5

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +++|+||||+||||+++.+++.+
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHh
Confidence            49999999999999999999876

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=4.3e-05  Score=59.65  Aligned_cols=20  Identities=40%  Similarity=0.597  Sum_probs=18.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++++|+||+||||+++.++.
T Consensus        17 iil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          17 VVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHTG
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999987754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.74  E-value=6.5e-06  Score=64.13  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=20.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|+||||+||||+|+.+++.+
T Consensus         5 I~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            8999999999999999999875

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=7.7e-06  Score=63.59  Aligned_cols=24  Identities=38%  Similarity=0.638  Sum_probs=22.1

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      |.++|.|+||+||||+++.+|+.+
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh
Confidence            568888999999999999999987

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.72  E-value=8.3e-06  Score=63.94  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=21.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|+|+||+||||+++++++.|.
T Consensus         9 I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           9 IFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            88999999999999999999874

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.71  E-value=0.00025  Score=56.62  Aligned_cols=25  Identities=36%  Similarity=0.343  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      -++|.||+|+||||++-.+|..+..
T Consensus         8 vi~lvGptGvGKTTTiaKLA~~~~~   32 (207)
T d1okkd2           8 VVLVVGVNGVGKTTTIAKLGRYYQN   32 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3899999999999998888887643

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.65  E-value=8.2e-05  Score=59.80  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=22.4

Q ss_pred             CCCe-EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           33 DCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        33 ~~~~-~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ..|+ ++|.||+|+||||++-.+|..+.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3456 89999999999999888887664

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.64  E-value=7.6e-05  Score=59.90  Aligned_cols=28  Identities=25%  Similarity=0.297  Sum_probs=18.9

Q ss_pred             CCCCe-EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           32 QDCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        32 ~~~~~-~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++.|+ ++|.||+|+||||++-.+|..+.
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34567 88999999999999888887663

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=1.7e-05  Score=61.44  Aligned_cols=27  Identities=33%  Similarity=0.504  Sum_probs=23.6

Q ss_pred             CCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           34 CPHLLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        34 ~~~~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      .|.+.|+|++|+||||+++.+++.+..
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~   28 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCA   28 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            366899999999999999999998743

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.62  E-value=0.00012  Score=54.46  Aligned_cols=40  Identities=5%  Similarity=0.238  Sum_probs=26.3

Q ss_pred             CCceEEEEeCCCcCCHHHHHHHHHHHhhc--cCceeEEEEec
Q 018543          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKY--SASCRLILCCN  168 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~--~~~~~~Il~~~  168 (354)
                      .+..+||+||+|.++......+...++..  .....+++.|-
T Consensus        93 ~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~TA  134 (136)
T d1a1va1          93 GAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATA  134 (136)
T ss_dssp             CCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEES
T ss_pred             hcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEeC
Confidence            45689999999999887666665555432  23445555443

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.62  E-value=1.3e-05  Score=62.54  Aligned_cols=22  Identities=18%  Similarity=0.442  Sum_probs=21.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|+||||+||||+|+.+++.+
T Consensus         6 I~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            8899999999999999999976

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.61  E-value=1.7e-05  Score=61.35  Aligned_cols=23  Identities=43%  Similarity=0.664  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +++|.||||+||||+++.+|+.+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999999987

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.59  E-value=1.5e-05  Score=63.67  Aligned_cols=23  Identities=35%  Similarity=0.596  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      -+++.||||+||||+++.||+.+
T Consensus         8 iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           8 VVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999999976

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.56  E-value=2.2e-05  Score=61.26  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +++|.||||+||||+++.+|+.+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            38889999999999999999987

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.55  E-value=2e-05  Score=62.62  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=22.0

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+++|.||||+||||+++.+++.+
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            359999999999999999999987

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=3.3e-05  Score=61.64  Aligned_cols=25  Identities=28%  Similarity=0.508  Sum_probs=22.2

Q ss_pred             CCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           34 CPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        34 ~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .|-++|.||||+||||.|+.+++.+
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3448999999999999999999976

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.45  E-value=3.3e-05  Score=60.66  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +++|.||||+||||.++.+|+.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999999987

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.44  E-value=0.00047  Score=55.04  Aligned_cols=23  Identities=30%  Similarity=0.274  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|.||+|+||||++-.+|..+.
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            88999999999999988888764

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.44  E-value=1.7e-05  Score=61.93  Aligned_cols=22  Identities=50%  Similarity=0.674  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||||+||||+++.+++.+
T Consensus         7 I~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTCS
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999998754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.43  E-value=4.2e-05  Score=60.70  Aligned_cols=27  Identities=26%  Similarity=0.405  Sum_probs=23.2

Q ss_pred             CCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           32 QDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        32 ~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++-.++|.||||+||||.++.+|..+
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHH
Confidence            345568899999999999999999875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.42  E-value=4.3e-05  Score=61.48  Aligned_cols=25  Identities=28%  Similarity=0.483  Sum_probs=22.5

Q ss_pred             Ce-EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           35 PH-LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        35 ~~-~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      |. ++++|.||+||||+|+.+++.+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            55 89999999999999999998774

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=4.3e-05  Score=60.06  Aligned_cols=23  Identities=39%  Similarity=0.788  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +++|.||||+||||.++.|++.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999999987

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.00022  Score=59.40  Aligned_cols=48  Identities=23%  Similarity=0.402  Sum_probs=34.5

Q ss_pred             HHHHHHhcCCCC--e-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543           24 NLKKLVTEQDCP--H-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus        24 ~l~~~l~~~~~~--~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      .|..++-.|.+|  + ..|+||||+|||+++..++.....++...++++.+
T Consensus        41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            455555434433  2 89999999999999999988877666555666654

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.40  E-value=0.00018  Score=57.20  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=28.7

Q ss_pred             CCceEEEEeCCCcCCHHH-HHHHHHHHhhccCceeEEEEecCCCcccHHHhh
Q 018543          129 RGFKVLVLNEVDKLSREA-QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS  179 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~~-~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s  179 (354)
                      .+..++|+||+|.+..+. ...+...+.....+..+++.|..+......+..
T Consensus       124 ~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~l~~SATp~~~~~~~~~  175 (200)
T d1wp9a1         124 EDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIME  175 (200)
T ss_dssp             TSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHH
T ss_pred             cccceEEEEehhhhhcchhHHHHHHHHHhcCCCCcEEEEEecCCCcHHHHHH
Confidence            466899999999875432 233333333333455666666666544444443

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=4.8e-05  Score=60.49  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||||+||||.|+.+|+.+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999999976

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.37  E-value=4.7e-05  Score=60.37  Aligned_cols=22  Identities=36%  Similarity=0.673  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||||+||||.++.||..+
T Consensus         6 iil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7889999999999999999876

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.37  E-value=4.7e-05  Score=59.93  Aligned_cols=23  Identities=26%  Similarity=0.548  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||||+||||.++.||+.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999999987

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=5.6e-05  Score=59.36  Aligned_cols=23  Identities=35%  Similarity=0.674  Sum_probs=21.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||||+||||.++.+|..+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37888999999999999999976

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.30  E-value=6.4e-05  Score=58.95  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=22.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      ++|.||||+||||+++.++..+...
T Consensus         4 I~i~G~~GsGKsT~~~~L~~~l~~~   28 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMDNLRKE   28 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHc
Confidence            8899999999999999999987443

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.29  E-value=0.0013  Score=49.52  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +++.|+||+||||+++.+...-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999987653

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.28  E-value=6.9e-05  Score=59.61  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.6

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +-++|.||||+||||.++.+++.+
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            348999999999999999999975

>d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.0012  Score=49.09  Aligned_cols=125  Identities=14%  Similarity=0.034  Sum_probs=80.1

Q ss_pred             HHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccccccccCCCccccccccccccCceeeeCCCCCC
Q 018543           24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG  103 (354)
Q Consensus        24 ~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  103 (354)
                      +|...+++|-.|-++|+|+.-.-+..+...+-+.+...+...                             ......+..
T Consensus         8 ~L~~~l~k~l~~vyll~G~E~~L~~~~~~~i~~~~~~~~~~~-----------------------------~~~~~~~~~   58 (140)
T d1jqlb_           8 QLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEE-----------------------------HHTFSIDPN   58 (140)
T ss_dssp             GHHHHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCE-----------------------------EECCCCSTT
T ss_pred             HHHHHHhcCCCcEEEEEcChHHHHHHHHHHHHHHHHhCCcce-----------------------------eeeeccccc
Confidence            455566666334499999998888888888876653322110                             000000111


Q ss_pred             CcchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCc-CCHHHHHHHHHHHhhccCceeEEEEecCCC------cccHH
Q 018543          104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYSASCRLILCCNSSS------KVTEA  176 (354)
Q Consensus       104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~viiiDE~d~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~------~l~~~  176 (354)
                          ....+++..+.+ .|+    .+++++|+|++++. .+....+.|.++++.+++.+.+|+++...+      ++..+
T Consensus        59 ----~~~~~l~~~~~t-~sl----F~~krli~i~~~~~~~~k~~~~~L~~~~~~~~~~~~lii~~~~~~k~~~~~k~~K~  129 (140)
T d1jqlb_          59 ----TDWNAIFSLCQA-MSL----FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTA  129 (140)
T ss_dssp             ----CCHHHHHHHHHC-CCT----TCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHH
T ss_pred             ----CCHHHHHHHHcC-CCc----ccCcEEEEEEcCCCCCcHHHHHHHHHHHhCCCCCEEEEEEcCCCCchhhhhHHHHH
Confidence                125566655444 443    46789999999854 457778889999999999999999887654      34566


Q ss_pred             Hhhhcceeee
Q 018543          177 IRSRCLNIRI  186 (354)
Q Consensus       177 l~sR~~~i~~  186 (354)
                      +..+..+|..
T Consensus       130 l~k~g~vI~C  139 (140)
T d1jqlb_         130 LANRSVQVTC  139 (140)
T ss_dssp             HGGGCEEEEC
T ss_pred             HHhCCeEEeC
Confidence            6666666553

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.25  E-value=0.0057  Score=47.12  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=19.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .+.|.|.+|+||||+++++.+
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999865

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=7.1e-05  Score=58.66  Aligned_cols=23  Identities=22%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .++|.||||+||||.++.+++.+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999876

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.23  E-value=0.00094  Score=54.53  Aligned_cols=27  Identities=22%  Similarity=0.422  Sum_probs=23.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGA   63 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~   63 (354)
                      .+++||||+|||+++..+|......+.
T Consensus        29 ~li~G~pGsGKT~l~~qia~~~~~~~~   55 (242)
T d1tf7a2          29 ILATGATGTGKTLLVSRFVENACANKE   55 (242)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHTTTC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999988755443

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.22  E-value=0.00011  Score=61.34  Aligned_cols=48  Identities=25%  Similarity=0.405  Sum_probs=33.7

Q ss_pred             HHHHHHhcCCCC--e-EEEeCCCCCcHHHHHHHHHHHhcCCCCcccccccc
Q 018543           24 NLKKLVTEQDCP--H-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (354)
Q Consensus        24 ~l~~~l~~~~~~--~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   71 (354)
                      .|...+-.|.+|  . ..|+||+|+|||+++..++.....++...+++|.+
T Consensus        44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            344444334333  2 88999999999999999988776666555666654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.0001  Score=59.74  Aligned_cols=24  Identities=38%  Similarity=0.643  Sum_probs=21.7

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      |-+.+.||||+||+|.++.+++.+
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            447888999999999999999987

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.0014  Score=53.40  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++++||+.+||||++|.++-..
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHHHH
Confidence            8999999999999999987653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.17  E-value=0.00063  Score=52.60  Aligned_cols=30  Identities=20%  Similarity=0.385  Sum_probs=22.4

Q ss_pred             HHHHhcCCCCeEEEeCCCCCcHHHHHHHHHH
Q 018543           26 KKLVTEQDCPHLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        26 ~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~   56 (354)
                      -.++.+.. -.+++.|.||+||||++..+..
T Consensus         8 ~~~~~~k~-~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1           8 WRLFNHQE-HKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             HHHHTTSC-EEEEEEESTTSSHHHHHHHHHT
T ss_pred             HHHhCCCe-EEEEEECCCCCCHHHHHHHHhc
Confidence            34444333 2499999999999999998865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.15  E-value=0.0003  Score=53.95  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=18.6

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .++|.|++|+||||+++.+.+
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            389999999999999998754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.14  E-value=0.0001  Score=57.99  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      ++|.|+||+||||+++.+++.+..
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            789999999999999999998743

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00092  Score=50.80  Aligned_cols=41  Identities=5%  Similarity=0.083  Sum_probs=26.1

Q ss_pred             ceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .-++++|.-+....+....+...++....+.++|++.|..+
T Consensus        83 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~D  123 (161)
T d2gj8a1          83 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD  123 (161)
T ss_dssp             EEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred             ccceeeccccccchhhhhhhhhhhhhcccccceeeccchhh
Confidence            35666666655444445555666666666778888888754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.12  E-value=0.00028  Score=55.70  Aligned_cols=24  Identities=33%  Similarity=0.253  Sum_probs=21.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      +.+.||+|+||||+|+.++..+..
T Consensus        25 IgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          25 LGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcc
Confidence            669999999999999999987643

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.11  E-value=0.00063  Score=55.04  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++++||+..||||+.|.++-.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHHH
Confidence            899999999999999988654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.10  E-value=0.00024  Score=57.03  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      -+.|+|.||+||||+++.+++.+.
T Consensus        26 vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          26 TIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            399999999999999999998764

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.0052  Score=49.61  Aligned_cols=45  Identities=13%  Similarity=0.052  Sum_probs=35.1

Q ss_pred             cCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      .|..+.+.+...+.++.+.+.||+|..|+|||.++-..+......
T Consensus        59 ~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~  103 (233)
T d2eyqa3          59 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN  103 (233)
T ss_dssp             HHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHc
Confidence            366677788888888877779999999999999877666555443

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.04  E-value=0.00016  Score=58.59  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.+.||||+||||.|+.||.++
T Consensus         6 IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5577999999999999999987

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.0017  Score=53.92  Aligned_cols=49  Identities=20%  Similarity=0.359  Sum_probs=33.5

Q ss_pred             HHHHHHhcCCCCe---EEEeCCCCCcHHHHHHHHHHHhcCCCCccccccccc
Q 018543           24 NLKKLVTEQDCPH---LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (354)
Q Consensus        24 ~l~~~l~~~~~~~---~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~   72 (354)
                      .|...+-.|.+|.   ..|+||+|+|||+++..++......+...+++|.+.
T Consensus        47 ~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             HHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             HHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            3444443244432   899999999999999888876666665556666543

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.98  E-value=0.00082  Score=53.45  Aligned_cols=42  Identities=19%  Similarity=0.302  Sum_probs=27.6

Q ss_pred             CCceEEEEeCCCcCCH----HHHHHHHHHHhhccCceeEEEEecCC
Q 018543          129 RGFKVLVLNEVDKLSR----EAQHSLRRTMEKYSASCRLILCCNSS  170 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~----~~~~~Ll~~le~~~~~~~~Il~~~~~  170 (354)
                      ....+||+||+|.+..    .....++..+...++++.+|+.|...
T Consensus       137 ~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSATl  182 (202)
T d2p6ra3         137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATA  182 (202)
T ss_dssp             GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             hhhhhccccHHHHhcccccchHHHHHHHHHHhcCCCCcEEEEcCCC
Confidence            3457999999998742    23445666666655667777766553

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.0014  Score=52.12  Aligned_cols=22  Identities=41%  Similarity=0.543  Sum_probs=19.6

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++|.|+||+||||+++.+.+.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999998763

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00024  Score=55.96  Aligned_cols=22  Identities=36%  Similarity=0.754  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|+||+|+||||+++.++++.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999998864

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.89  E-value=0.0026  Score=50.65  Aligned_cols=39  Identities=21%  Similarity=0.346  Sum_probs=27.9

Q ss_pred             cCHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      -.+...+.+..+++.   .+.++.+|.|+|||.++-.++..+
T Consensus        71 Lr~yQ~eav~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~  109 (206)
T d2fz4a1          71 LRDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL  109 (206)
T ss_dssp             CCHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred             cCHHHHHHHHHHHhC---CCcEEEeCCCCCceehHHhHHHHh
Confidence            345555566666643   246788999999999988887765

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0038  Score=50.09  Aligned_cols=52  Identities=13%  Similarity=0.288  Sum_probs=35.2

Q ss_pred             CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCCcccHHHhhh
Q 018543          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR  180 (354)
                      ..-+.+|+||+|.|... ..+.+.++++..+.+..+++++....+-...+.++
T Consensus       154 ~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~  206 (218)
T d2g9na1         154 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKK  206 (218)
T ss_dssp             TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred             ccceEEEeeecchhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHH
Confidence            45689999999987543 45667777777777778888777665433334333

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.87  E-value=0.00027  Score=55.42  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||+|+||||+++.+++..
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            8999999999999999998764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.0043  Score=49.00  Aligned_cols=23  Identities=35%  Similarity=0.699  Sum_probs=20.7

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      |.++|.|+||+||||++.++.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56999999999999999999764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.00029  Score=55.64  Aligned_cols=22  Identities=36%  Similarity=0.767  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.||+|+||||+++.++...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8899999999999999998865

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.0063  Score=48.23  Aligned_cols=43  Identities=12%  Similarity=0.288  Sum_probs=31.4

Q ss_pred             CCceEEEEeCCCcCC-HHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+-+.+|+||+|.|- .+....+..+++..+....+++++....
T Consensus       142 ~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~Q~il~SATl~  185 (206)
T d1s2ma1         142 SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP  185 (206)
T ss_dssp             TTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred             ccceEEEeechhhhhhhhhHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence            455789999998764 4566777777777777777777766544

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00074  Score=51.69  Aligned_cols=20  Identities=20%  Similarity=0.418  Sum_probs=18.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +++.|++|+||||++..+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.78  E-value=0.0009  Score=51.72  Aligned_cols=19  Identities=37%  Similarity=0.602  Sum_probs=17.5

Q ss_pred             EEEeCCCCCcHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALL   55 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la   55 (354)
                      +++.|++|+||||+++.+.
T Consensus        19 I~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            9999999999999998774

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0045  Score=49.15  Aligned_cols=43  Identities=16%  Similarity=0.292  Sum_probs=30.1

Q ss_pred             CCceEEEEeCCCcCC-HHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      ..-+.+|+||+|.|- .+....+.++++..+.+..+++.+....
T Consensus       145 ~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~~  188 (206)
T d1veca_         145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP  188 (206)
T ss_dssp             TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred             cccceEEEeccccccccchHHHHHHHHHhCCCCCEEEEEEecCC
Confidence            456899999999664 4455667777777667777777665543

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.75  E-value=0.0048  Score=49.04  Aligned_cols=43  Identities=14%  Similarity=0.338  Sum_probs=30.6

Q ss_pred             CCceEEEEeCCCcC-CHHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKL-SREAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l-~~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      .+-+.+|+||+|.+ +.+....+.++++..+++..+++.+....
T Consensus       144 ~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~~  187 (208)
T d1hv8a1         144 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMP  187 (208)
T ss_dssp             TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCC
T ss_pred             ccCcEEEEEChHHhhcCCChHHHHHHHHhCCCCCeEEEEEccCC
Confidence            45679999999965 44445667777877777777887765543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.74  E-value=0.00051  Score=52.74  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=22.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~   62 (354)
                      +.++|++|+||||++..++++|...+
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L~~~g   29 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAAVREG   29 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            67999999999999999999876443

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.017  Score=45.70  Aligned_cols=52  Identities=13%  Similarity=0.272  Sum_probs=34.0

Q ss_pred             CCceEEEEeCCCcCC--HHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhh
Q 018543          129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (354)
Q Consensus       129 ~~~~viiiDE~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR  180 (354)
                      .+-+.+++||+|.|-  ....+.+.++++..+....+++.+....+-...+.++
T Consensus       144 ~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~  197 (207)
T d1t6na_         144 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK  197 (207)
T ss_dssp             TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred             cccceeehhhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHH
Confidence            456899999999663  3566667777777766777777665554333334443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.72  E-value=0.022  Score=43.25  Aligned_cols=20  Identities=40%  Similarity=0.695  Sum_probs=18.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +.+.|++|+||||+++++.+
T Consensus         3 V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           3 VLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999865

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.0059  Score=48.68  Aligned_cols=53  Identities=9%  Similarity=0.249  Sum_probs=34.9

Q ss_pred             CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhc
Q 018543          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~  181 (354)
                      .+-+.+++||+|.+... ..+.+.++++..+....+++.+.....-...+.+++
T Consensus       150 ~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~  203 (212)
T d1qdea_         150 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKF  203 (212)
T ss_dssp             TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHH
T ss_pred             CcceEEeehhhhhhcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHH
Confidence            45689999999977532 456677777777777777777665543333444443

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0023  Score=49.12  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=19.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||++++.+.+.
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0089  Score=45.39  Aligned_cols=21  Identities=24%  Similarity=0.518  Sum_probs=19.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||+++..+...
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00052  Score=54.86  Aligned_cols=21  Identities=43%  Similarity=0.773  Sum_probs=19.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++|+||+|+||||+.+.+...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            899999999999999998875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0019  Score=49.51  Aligned_cols=21  Identities=24%  Similarity=0.635  Sum_probs=19.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||++++.+...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            799999999999999998764

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0069  Score=48.66  Aligned_cols=43  Identities=19%  Similarity=0.355  Sum_probs=31.5

Q ss_pred             CCceEEEEeCCCcCC-HHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       129 ~~~~viiiDE~d~l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      ..-+.+|+||+|.|- .+..+.+.++++..+....+++.+....
T Consensus       158 ~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~  201 (222)
T d2j0sa1         158 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP  201 (222)
T ss_dssp             TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred             ccceeeeecchhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence            456899999998764 4456677788877777777777766554

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0044  Score=47.00  Aligned_cols=21  Identities=33%  Similarity=0.638  Sum_probs=18.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|.+|+|||++++.+...
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00062  Score=54.62  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.+.||+|+||||+++.++..+
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6699999999999999999876

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0044  Score=47.17  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||+++..+...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            799999999999999988763

>d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: gamma subunit
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.03  Score=40.23  Aligned_cols=86  Identities=7%  Similarity=0.011  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------------------hCC
Q 018543          254 EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------------------------RLD  306 (354)
Q Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~~l~~~~~~---------------------------~~~  306 (354)
                      .+.++++++.++.    ++..++.+.+.++...|.+|..++.++...+..                           +++
T Consensus         4 ~~~~~~L~~~I~~----~d~~~~L~~l~~i~~~G~d~~~~l~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~~a~~~~   79 (126)
T d1jr3a1           4 DDQALSLVEAMVE----ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP   79 (126)
T ss_dssp             HHHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHcCC
Confidence            3567889999988    667778888888889999999888876655433                           345


Q ss_pred             HHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHH
Q 018543          307 AEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMS  343 (354)
Q Consensus       307 ~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~  343 (354)
                      .+......+.+.+....|+...++++.+|-.+.|++.
T Consensus        80 ~~~L~~~~~il~~~~~~ik~s~~~r~~~Em~llrll~  116 (126)
T d1jr3a1          80 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA  116 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            5566778899999999999999999999999999875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.003  Score=48.66  Aligned_cols=20  Identities=30%  Similarity=0.624  Sum_probs=18.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +++.|++|+||||+++.+..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998865

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00084  Score=53.68  Aligned_cols=23  Identities=17%  Similarity=0.212  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|+||||+|||+++..+|....
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.51  E-value=0.0012  Score=49.83  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=21.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|.|+=|+||||++|.+++.+-
T Consensus        36 i~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          36 VYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEecCCCccHHHHHHHHHhhcc
Confidence            88999999999999999999873

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0043  Score=47.24  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||++++.+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.002  Score=53.78  Aligned_cols=34  Identities=26%  Similarity=0.654  Sum_probs=24.4

Q ss_pred             HHHHHhcCC-CCe-EEEeCCCCCcHHHHHHHHHHHh
Q 018543           25 LKKLVTEQD-CPH-LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        25 l~~~l~~~~-~~~-~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +..+...++ .|- +.|.|++|+||||++..+...+
T Consensus        16 ~~~~~~~~~~~P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          16 IPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             HHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCEEEEeECCCCCCHHHHHHHHHHHH
Confidence            334444443 344 6699999999999999887766

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0021  Score=49.51  Aligned_cols=21  Identities=24%  Similarity=0.562  Sum_probs=18.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||+++..+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999988753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.002  Score=55.10  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=24.4

Q ss_pred             CCCCeEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           32 QDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        32 ~~~~~~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      |+...+-++||||+||||++..+++.+...
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~   81 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE   81 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            444449999999999999999999877543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.39  E-value=0.0007  Score=55.28  Aligned_cols=20  Identities=25%  Similarity=0.313  Sum_probs=18.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++|+||||+|||+++..++.
T Consensus        37 ~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          37 TELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            99999999999999988764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.35  E-value=0.0062  Score=46.18  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=18.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++|.|++|+||||+++.+...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.33  E-value=0.0011  Score=51.11  Aligned_cols=20  Identities=30%  Similarity=0.559  Sum_probs=18.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALL   55 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la   55 (354)
                      .+++.|+||+||||+++.+.
T Consensus        14 kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            49999999999999999764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0011  Score=51.57  Aligned_cols=21  Identities=24%  Similarity=0.605  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++|.||+|+||+|+++.+++.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999998865

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.31  E-value=0.0024  Score=54.57  Aligned_cols=29  Identities=31%  Similarity=0.279  Sum_probs=23.5

Q ss_pred             CCCCeEEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           32 QDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        32 ~~~~~~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      ++...+-++||||+||||++..++..+..
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~   77 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTA   77 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhh
Confidence            33333899999999999999999987653

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.31  E-value=0.001  Score=54.62  Aligned_cols=23  Identities=35%  Similarity=0.366  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++++||||+|||+++..++....
T Consensus        39 ~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          39 TEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhh
Confidence            99999999999999998887653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0018  Score=53.01  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=25.4

Q ss_pred             HHHHHhcCCCCe---EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           25 LKKLVTEQDCPH---LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        25 l~~~l~~~~~~~---~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      |..++..| +|.   ++|+||||+|||+++..++....
T Consensus        26 LD~~lgGG-ip~G~~~~i~G~~GsGKT~lalq~~~~~~   62 (258)
T d1v5wa_          26 FDKLLGGG-IESMAITEAFGEFRTGKTQLSHTLCVTAQ   62 (258)
T ss_dssp             HHHHTTSS-BCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred             HHHhhcCC-CcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44444434 432   99999999999999999987543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.30  E-value=0.017  Score=47.36  Aligned_cols=21  Identities=24%  Similarity=0.526  Sum_probs=19.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      +++|.|.+|+||||++..+.+
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            399999999999999998865

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0074  Score=46.23  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=19.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|.+|+|||++++.+...
T Consensus         9 v~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999988753

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.21  E-value=0.017  Score=45.55  Aligned_cols=52  Identities=8%  Similarity=0.165  Sum_probs=33.6

Q ss_pred             CCceEEEEeCCCcCCHH-HHHHHHHHHhhccCceeEEEEecCCCcccHHHhhh
Q 018543          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR  180 (354)
                      .+-+.+++||+|.+... ..+.+..++...+++..+++.+....+-...+.++
T Consensus       146 ~~l~~lViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~  198 (209)
T d1q0ua_         146 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKK  198 (209)
T ss_dssp             GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHH
T ss_pred             ccceEEEEeecccccccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHH
Confidence            45688999999987543 34556666777667777888766554323334443

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.13  E-value=0.017  Score=43.80  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||++++.+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999988653

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0014  Score=52.33  Aligned_cols=25  Identities=20%  Similarity=0.306  Sum_probs=22.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      +.|.|+.|+||||.++.+++.+...
T Consensus         6 I~ieG~dGsGKsT~~~~L~~~L~~~   30 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVEALCAA   30 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            7888999999999999999987443

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.07  E-value=0.0017  Score=52.88  Aligned_cols=22  Identities=41%  Similarity=0.606  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +++.||+|+||||++..+.+.+
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Confidence            6899999999999999998765

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0096  Score=46.16  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=19.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|.+|+|||++++.+...
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            899999999999999988764

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=96.00  E-value=0.0065  Score=51.04  Aligned_cols=18  Identities=6%  Similarity=0.340  Sum_probs=14.7

Q ss_pred             CCceEEEEeCCCcCCHHH
Q 018543          129 RGFKVLVLNEVDKLSREA  146 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~~  146 (354)
                      .+.+++|+||+|.+....
T Consensus        99 ~~~~~vViDE~H~~~~~~  116 (305)
T d2bmfa2          99 PNYNLIIMDEAHFTDPAS  116 (305)
T ss_dssp             CCCSEEEEESTTCCSHHH
T ss_pred             cceeEEEeeeeeecchhh
Confidence            457899999999997654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0072  Score=47.30  Aligned_cols=20  Identities=35%  Similarity=0.650  Sum_probs=18.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +++.|++|+||||+++.+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998875

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.004  Score=52.56  Aligned_cols=27  Identities=22%  Similarity=0.201  Sum_probs=22.7

Q ss_pred             CCCe-EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           33 DCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        33 ~~~~-~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.|- +.+.|++|+||||+++.++..+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            4444 78999999999999999998663

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.94  E-value=0.0017  Score=51.03  Aligned_cols=25  Identities=24%  Similarity=0.480  Sum_probs=22.0

Q ss_pred             CCCCeEEEeCCCCCcHHHHHHHHHH
Q 018543           32 QDCPHLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        32 ~~~~~~ll~Gp~G~GKTtla~~la~   56 (354)
                      +..|.+.|.|+||+||||+++++.+
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcC
Confidence            4566799999999999999999974

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0067  Score=46.25  Aligned_cols=20  Identities=35%  Similarity=0.595  Sum_probs=18.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +++.|++|+|||++++.+.+
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78999999999999998765

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.91  E-value=0.0021  Score=48.76  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++|.|+||+||||+++.+...
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999998763

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.013  Score=44.67  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++|.|.+|+|||++++.+...
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999988753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.0022  Score=48.40  Aligned_cols=21  Identities=43%  Similarity=0.642  Sum_probs=19.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++|.|+||+||||++..+.+.
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998763

>d1jr3d1 a.80.1.1 (D:212-338) delta subunit {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: delta subunit
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.015  Score=41.93  Aligned_cols=42  Identities=14%  Similarity=0.145  Sum_probs=32.0

Q ss_pred             HHHhCCHHHHHHHHHHHHHHhhHhhCCC--ChhHhHHHHHHHHH
Q 018543          301 LLKRLDAEIKHEVCHWAAYYEHKMRRGN--KAIFHLEAFVAKFM  342 (354)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~l~l~~~i~~~~  342 (354)
                      ..++++.....+++..+.+.|..++.+.  ++...||.++.+++
T Consensus        78 ~~~~~s~~~l~~~l~~l~~~D~~~K~~~~~~~~~~le~l~l~lc  121 (127)
T d1jr3d1          78 ALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLC  121 (127)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence            3345666677789999999999999653  44678899888765

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.90  E-value=0.0026  Score=49.04  Aligned_cols=20  Identities=40%  Similarity=0.612  Sum_probs=18.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++|.|++|+||||++..+..
T Consensus        16 I~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          16 LVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEETTSSHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            99999999999999988754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0021  Score=51.26  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      +.|.|+.|+||||.++.+++.+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~~L~~   28 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVETLEQ   28 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            889999999999999999987743

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.019  Score=43.45  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=19.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|.+|+|||++++.+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999998764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.82  E-value=0.0014  Score=51.60  Aligned_cols=22  Identities=32%  Similarity=0.406  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.|+.|+||||+++.+++.+
T Consensus        12 I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          12 VLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEECSTTSCHHHHHHTTGGGT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999998865

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.76  E-value=0.0037  Score=50.14  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=24.1

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHH
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~   56 (354)
                      ...|+.+++ |+  ..+|.|++|+||||++.++..
T Consensus        86 ~~~L~~~l~-~k--t~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          86 IEELKEYLK-GK--ISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             HHHHHHHHS-SS--EEEEECSTTSSHHHHHHHHST
T ss_pred             HhhHHHHhc-CC--eEEEECCCCCCHHHHHHhhcc
Confidence            455666663 32  388999999999999998754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.021  Score=43.41  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=19.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||+++..+...
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            799999999999999998764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.73  E-value=0.0015  Score=53.25  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=21.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      ++|.||||+|||+++..+|..+..
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~~~   60 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNLQN   60 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999876643

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=95.63  E-value=0.041  Score=40.31  Aligned_cols=36  Identities=14%  Similarity=0.176  Sum_probs=23.6

Q ss_pred             CCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEe
Q 018543          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC  167 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~  167 (354)
                      .+..+|+|||++.++. ....+...+.+.  +..+++..
T Consensus        78 ~~~dvI~IDE~QFf~d-~i~~~~~~~~~~--g~~Viv~G  113 (139)
T d2b8ta1          78 DETKVIGIDEVQFFDD-RICEVANILAEN--GFVVIISG  113 (139)
T ss_dssp             TTCCEEEECSGGGSCT-HHHHHHHHHHHT--TCEEEEEC
T ss_pred             cCcCEEEechhhhcch-hHHHHHHHHHhc--CceEEEEE
Confidence            3568999999999974 445566666542  34455544

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.60  E-value=0.0039  Score=49.90  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.5

Q ss_pred             CCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           33 DCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        33 ~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +..-+.|.|+.|+||||.++.+++.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L   27 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKL   27 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence            33348999999999999999999876

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.60  E-value=0.005  Score=51.76  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=16.8

Q ss_pred             CeEEEeCCCCCcHHHHH-HHHHH
Q 018543           35 PHLLFYGPPGSGKKTLI-MALLR   56 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla-~~la~   56 (354)
                      .++++.|||||||||++ ..++.
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~   37 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAH   37 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHHH
Confidence            45899999999999864 44444

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.56  E-value=0.0037  Score=48.08  Aligned_cols=20  Identities=30%  Similarity=0.577  Sum_probs=18.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++|.||+|+||||++..+..
T Consensus        17 vl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          17 VLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            99999999999999987765

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.56  E-value=0.0038  Score=49.44  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      +.|.|+.|+||||+++.+++.+..
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~   26 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRA   26 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            678999999999999999988743

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.52  E-value=0.0028  Score=51.13  Aligned_cols=20  Identities=30%  Similarity=0.524  Sum_probs=17.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++|+||||+|||+++..++.
T Consensus        29 ~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          29 TLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            99999999999999976654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.49  E-value=0.0041  Score=48.56  Aligned_cols=20  Identities=35%  Similarity=0.376  Sum_probs=17.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +.++|++|+||||+|+.+..
T Consensus         6 IgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56999999999999998854

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.45  E-value=0.004  Score=47.59  Aligned_cols=21  Identities=19%  Similarity=0.464  Sum_probs=19.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||++..+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            899999999999999988764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0045  Score=47.56  Aligned_cols=20  Identities=25%  Similarity=0.554  Sum_probs=18.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +++.|++|+||||++..+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999988875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.23  E-value=0.0043  Score=47.71  Aligned_cols=20  Identities=30%  Similarity=0.566  Sum_probs=18.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++|.||+|+||||++..+..
T Consensus        18 vli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          18 VLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            99999999999999987754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0051  Score=49.91  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=21.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.|-|+.|+||||+++.+++.+.
T Consensus         5 IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           5 LSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHh
Confidence            88999999999999999999763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0051  Score=47.74  Aligned_cols=20  Identities=35%  Similarity=0.541  Sum_probs=18.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +++.|++|+||||+++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0056  Score=46.73  Aligned_cols=21  Identities=33%  Similarity=0.736  Sum_probs=19.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||++++.+...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.18  E-value=0.0026  Score=53.07  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=19.3

Q ss_pred             CCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           34 CPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        34 ~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .|-+.++|++|+||||+++.+.+.+-
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHh
Confidence            34489999999999999999988663

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0057  Score=46.55  Aligned_cols=21  Identities=19%  Similarity=0.436  Sum_probs=18.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++|.|.+|+|||++++.+...
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.17  E-value=0.0057  Score=46.88  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=18.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||+++.+...
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            889999999999999988753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.08  E-value=0.0055  Score=46.77  Aligned_cols=20  Identities=30%  Similarity=0.601  Sum_probs=18.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++|.|++|+||||++..+.+
T Consensus        18 vli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          18 VLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            99999999999999977765

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.0024  Score=50.18  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      .+|+||+|+||||++.++.-.+.+
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcC
Confidence            578999999999999999876644

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.00  E-value=0.0041  Score=48.11  Aligned_cols=21  Identities=38%  Similarity=0.586  Sum_probs=18.8

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .++|.|+||+||||++.++.+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999999865

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0078  Score=46.56  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=19.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|.+|+|||++++.+...
T Consensus         8 ivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.95  E-value=0.0072  Score=45.76  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||++++.+...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.0067  Score=46.28  Aligned_cols=20  Identities=25%  Similarity=0.732  Sum_probs=18.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +++.|++|+||||++..+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999988765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.95  E-value=0.0062  Score=46.28  Aligned_cols=21  Identities=29%  Similarity=0.672  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+||||+++.+...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0072  Score=46.10  Aligned_cols=21  Identities=24%  Similarity=0.528  Sum_probs=18.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||++++.+...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999988653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.91  E-value=0.055  Score=47.26  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=19.2

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++.+.|.||+||||++.++.+
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            499999999999999999864

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0027  Score=51.52  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHh
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      -+.|-|+.|+||||+++.+++.+
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999999865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0076  Score=46.35  Aligned_cols=21  Identities=29%  Similarity=0.650  Sum_probs=19.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||++++.+.+.
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998763

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.0075  Score=47.84  Aligned_cols=20  Identities=35%  Similarity=0.434  Sum_probs=17.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +.++|++|+||||+++.+..
T Consensus         6 IgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCcCCHHHHHHHHHH
Confidence            66999999999999998864

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=94.85  E-value=0.013  Score=55.14  Aligned_cols=57  Identities=12%  Similarity=0.195  Sum_probs=40.0

Q ss_pred             cccccCCCCCCCcccCHHHH--HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543            3 WVDKYRPKTLDQVIVHQDIA--QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus         3 w~ekyrP~~~~~~~g~~~~~--~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      |+++|+.+...++.-|--.+  ...+.+...++...+++.|.+|+|||+.++.+.+.+.
T Consensus        53 ~~~~y~~~~~~~~~PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          53 DIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             HHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCCChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45566666555654443222  4556666666655699999999999999999988763

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.84  E-value=0.0079  Score=46.55  Aligned_cols=20  Identities=25%  Similarity=0.586  Sum_probs=18.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +++.|.+||||||++..+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.84  E-value=0.0081  Score=45.66  Aligned_cols=21  Identities=19%  Similarity=0.542  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|.+|+||||+++.+...
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999998764

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.84  E-value=0.076  Score=43.94  Aligned_cols=39  Identities=13%  Similarity=0.154  Sum_probs=28.3

Q ss_pred             CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .+.....+..+++.++   .++.-|.|+|||.++..++..+.
T Consensus       115 rdyQ~~av~~~l~~~~---~il~~pTGsGKT~i~~~i~~~~~  153 (282)
T d1rifa_         115 HWYQKDAVFEGLVNRR---RILNLPTSAGRSLIQALLARYYL  153 (282)
T ss_dssp             CHHHHHHHHHHHHHSE---EEECCCTTSCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhcCC---ceeEEEcccCccHHHHHHHHHhh
Confidence            4555566667776543   67788999999999888876553

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0069  Score=46.03  Aligned_cols=21  Identities=19%  Similarity=0.396  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||++++.+...
T Consensus         7 v~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999988753

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.80  E-value=0.042  Score=40.35  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=22.5

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEe
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC  167 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~  167 (354)
                      ++.+|+|||++.++......+.. +.+.  +..+++..
T Consensus        80 ~~dvI~IDE~QFf~d~~~~~~~~-l~~~--g~~Viv~G  114 (141)
T d1xx6a1          80 DTEVIAIDEVQFFDDEIVEIVNK-IAES--GRRVICAG  114 (141)
T ss_dssp             TCSEEEECSGGGSCTHHHHHHHH-HHHT--TCEEEEEE
T ss_pred             cccEEEEeehhhccccHHHHHHh-heeC--CcEEEEEE
Confidence            45899999999998655554444 4432  34455544

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.0072  Score=46.28  Aligned_cols=21  Identities=29%  Similarity=0.649  Sum_probs=18.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|.+|+|||++++.+...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999988653

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.76  E-value=0.0079  Score=50.91  Aligned_cols=24  Identities=25%  Similarity=0.366  Sum_probs=17.8

Q ss_pred             CeEEEeCCCCCcHHHHH-HHHHHHh
Q 018543           35 PHLLFYGPPGSGKKTLI-MALLRQV   58 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla-~~la~~l   58 (354)
                      .++++.|+|||||||++ ..++..+
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHHHHHH
Confidence            35899999999999865 4455543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.008  Score=46.19  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||+++..+...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.60  E-value=0.0098  Score=45.30  Aligned_cols=21  Identities=19%  Similarity=0.596  Sum_probs=18.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||+++..+...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.0089  Score=49.41  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      .+|+|+||+|||+++..+|..+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999887653

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.57  E-value=0.017  Score=54.50  Aligned_cols=56  Identities=18%  Similarity=0.322  Sum_probs=39.4

Q ss_pred             ccccCCCCCCCcccCHHH--HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543            4 VDKYRPKTLDQVIVHQDI--AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~--~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +++|+.+...++.-|--.  -...+.++..++...+++.|.+|+|||..++.+.+.+.
T Consensus        93 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2          93 VDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             HHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            456666555555444222  24556667667655599999999999999999988763

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.49  E-value=0.0098  Score=47.01  Aligned_cols=20  Identities=30%  Similarity=0.336  Sum_probs=17.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +.++|+.|+||||+++.+..
T Consensus         5 IgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56899999999999997753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.48  E-value=0.0065  Score=46.93  Aligned_cols=20  Identities=35%  Similarity=0.655  Sum_probs=17.8

Q ss_pred             eEEEeCCCCCcHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALL   55 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la   55 (354)
                      .+++.|++|+||||+++.+.
T Consensus        19 KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            39999999999999998763

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.011  Score=45.30  Aligned_cols=20  Identities=30%  Similarity=0.481  Sum_probs=18.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      ++|.|++|+|||++++.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999988764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.0065  Score=48.81  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=21.4

Q ss_pred             CCCeEEEeCCCCCcHHHHHHHHHHH
Q 018543           33 DCPHLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        33 ~~~~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++|-++++|.-|+||||+++.+.+.
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4456899999999999999988764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.41  E-value=0.19  Score=38.13  Aligned_cols=20  Identities=35%  Similarity=0.416  Sum_probs=18.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +-+.|.|++||||++.++.+
T Consensus         8 IaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999999999864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.40  E-value=0.0099  Score=45.82  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++|.|++|+|||++++.+...
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.34  E-value=0.008  Score=46.31  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=19.0

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~   56 (354)
                      +.+.|.|.||+||||+++++.+
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4588999999999999998753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.30  E-value=0.0092  Score=46.13  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=18.7

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~   56 (354)
                      +.+.|.|+||+||||++.++.+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEE
T ss_pred             CeEEEECCCCCCHHHHHHHHhC
Confidence            4488999999999999988743

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.0063  Score=46.89  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=20.0

Q ss_pred             CCCeEEEeCCCCCcHHHHHHHHHH
Q 018543           33 DCPHLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        33 ~~~~~ll~Gp~G~GKTtla~~la~   56 (354)
                      ..+++.|.|+|++||||+++++.+
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhC
Confidence            345699999999999999987743

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.17  E-value=0.02  Score=47.24  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      ++|.|+||+|||+++..++..+
T Consensus        38 ~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHhh
Confidence            8999999999999998888654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.012  Score=45.09  Aligned_cols=21  Identities=38%  Similarity=0.599  Sum_probs=19.0

Q ss_pred             eEEEeCCCCCcHHHHHHHHHH
Q 018543           36 HLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .+.|.|.||+||||+++++.+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            388999999999999999865

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.09  E-value=0.014  Score=47.20  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|+|+.|+||||+|+.++..+
T Consensus         4 IgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998753

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=94.05  E-value=0.025  Score=53.61  Aligned_cols=56  Identities=14%  Similarity=0.275  Sum_probs=38.8

Q ss_pred             ccccCCCCCCCcccCHH--HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543            4 VDKYRPKTLDQVIVHQD--IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~--~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +.+|+-+...++.-|--  +-...+.++..++...+++.|.+|+|||+.++.+.+.+.
T Consensus        62 ~~~y~~~~~~~~~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          62 INAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             HHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            44565555555544422  224556666667655699999999999999999988763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.013  Score=45.59  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=18.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||+++..+...
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999888764

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.96  E-value=0.03  Score=52.88  Aligned_cols=56  Identities=16%  Similarity=0.316  Sum_probs=38.4

Q ss_pred             ccccCCCCCCCcccCHHH--HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543            4 VDKYRPKTLDQVIVHQDI--AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus         4 ~ekyrP~~~~~~~g~~~~--~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      +++|+-+...++.-|--.  -...+.++..++...+++.|.+|+|||+.++.+.+.+.
T Consensus        59 ~~~y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          59 IDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             HHHTTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            345555555555444222  24556666666655599999999999999999988773

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.0067  Score=46.36  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=17.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||+++..+...
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999877543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.91  E-value=0.0089  Score=45.72  Aligned_cols=21  Identities=29%  Similarity=0.594  Sum_probs=8.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|.+|+||||+++.+...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999888653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.88  E-value=0.0089  Score=50.29  Aligned_cols=20  Identities=40%  Similarity=0.587  Sum_probs=18.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      -+|+||+|+|||++..++.-
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            68999999999999999965

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.81  E-value=0.037  Score=52.89  Aligned_cols=55  Identities=18%  Similarity=0.244  Sum_probs=39.1

Q ss_pred             cccCCCCCCCcccCHHHH--HHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543            5 DKYRPKTLDQVIVHQDIA--QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~~~--~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|+-+...++.-|--.+  ...+.++..++...+++.|.+|+|||+.++.+.+.+.
T Consensus        92 ~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2          92 LAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             HHTTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCCcHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            455555566665443322  4566667677655699999999999999999888763

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.026  Score=43.24  Aligned_cols=21  Identities=38%  Similarity=0.468  Sum_probs=19.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|++|+|||+++..+...
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999988764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.72  E-value=0.015  Score=44.78  Aligned_cols=20  Identities=40%  Similarity=0.632  Sum_probs=18.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      +.|.|.+|+||||++.++.+
T Consensus        11 V~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHC
Confidence            88999999999999998865

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.65  E-value=0.0054  Score=46.16  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +.|.|+||+||||++.++.++-
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998753

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.014  Score=51.66  Aligned_cols=29  Identities=34%  Similarity=0.491  Sum_probs=23.4

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHHHhcCCCC
Q 018543           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGA   63 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~   63 (354)
                      .|+++.|++|+|||++++.++..+...+.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~   79 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGD   79 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCC
Confidence            37999999999999999887776655443

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.59  E-value=0.039  Score=45.17  Aligned_cols=41  Identities=17%  Similarity=0.226  Sum_probs=32.7

Q ss_pred             CHHHHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      |..++..+...+.++...+-||+|..|+|||.++-..+...
T Consensus        88 Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~  128 (264)
T d1gm5a3          88 QKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN  128 (264)
T ss_dssp             HHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHH
Confidence            67777778777777777678999999999999876666544

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.53  E-value=0.018  Score=44.80  Aligned_cols=18  Identities=33%  Similarity=0.628  Sum_probs=17.4

Q ss_pred             EEEeCCCCCcHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMAL   54 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~l   54 (354)
                      +++.|.+|+||||+++.+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            899999999999999988

>d2qw6a1 a.80.1.2 (A:241-328) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: MgsA/YrvN C-terminal domain-like
domain: Uncharacterized protein EfaeDRAFT 0938
species: Enterococcus faecium [TaxId: 1352]

Probab=93.50  E-value=0.032  Score=36.75  Aligned_cols=41  Identities=10%  Similarity=0.091  Sum_probs=34.2

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhhHhhCCCChhHhHHHHHHHHHHHHHH
Q 018543          298 LYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKG  347 (354)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~i~~~~~~~~~  347 (354)
                      .+.+.|+    .|++..+++.+|..||..++ |+.    +|+|++.++++
T Consensus         4 iSA~~KS----iRgSD~dAAlywlarml~~G-D~~----~i~RRLi~~As   44 (88)
T d2qw6a1           4 ISAFQKS----IRGSDVDAALHYLARLVEAG-DLA----SICRRLMVIGY   44 (88)
T ss_dssp             HHHHHHH----HHTTCHHHHHHHHHHHHHTT-CHH----HHHHHHHHHHH
T ss_pred             HHHHHHH----HHcCCccHHHHHHHHHHHcC-Chh----HHHHHHHHHHH
Confidence            4566776    78889999999999999998 542    79999999885

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=93.29  E-value=0.036  Score=52.87  Aligned_cols=55  Identities=22%  Similarity=0.310  Sum_probs=38.4

Q ss_pred             cccCCCCCCCcccCHH--HHHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHhc
Q 018543            5 DKYRPKTLDQVIVHQD--IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus         5 ekyrP~~~~~~~g~~~--~~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      ++|+.....++.-|--  +-...+.+...++...+++.|.+|+|||..++.+.+.+.
T Consensus        90 ~~y~~~~~~~~~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2          90 AKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             HHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4555555555544422  234666666667655599999999999999999988764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.18  E-value=0.0082  Score=48.18  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=18.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      .+|.|++|+||||++.++...
T Consensus       100 ~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2         100 TVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEESHHHHHHHHHHHHCC-
T ss_pred             EEEECCCCccHHHHHHhhccH
Confidence            789999999999999988643

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.16  E-value=0.037  Score=44.07  Aligned_cols=25  Identities=28%  Similarity=0.301  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      +++.|++|+||||+++.+...-..+
T Consensus         9 illlG~~~vGKTsll~~~~~~~~~p   33 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRILHVVL   33 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCcCC
Confidence            8999999999999999886543333

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.93  E-value=0.38  Score=35.56  Aligned_cols=48  Identities=13%  Similarity=0.166  Sum_probs=34.4

Q ss_pred             CCCceEEEEeCCCc------CCHHHHHHHHHHHhhccCceeEEEEecCCCcccHHHhhhc
Q 018543          128 KRGFKVLVLNEVDK------LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (354)
Q Consensus       128 ~~~~~viiiDE~d~------l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sR~  181 (354)
                      .+.+.+||+||+..      ++.   +.++++++..|...-+|+|.++.+   +.+..+.
T Consensus        92 ~~~~dllILDEi~~Ai~~gli~~---~~v~~ll~~rp~~~evVlTGr~~p---~~L~e~A  145 (157)
T d1g5ta_          92 DPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCH---RDILDLA  145 (157)
T ss_dssp             CTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCC---HHHHHHC
T ss_pred             cCccCEEeHHHHHHHHHcCCCCH---HHHHHHHHhCCCCCEEEEECCCCC---HHHHHhc
Confidence            46789999999632      233   467888888888899999988765   3444444

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.85  E-value=0.19  Score=41.11  Aligned_cols=25  Identities=16%  Similarity=0.068  Sum_probs=21.1

Q ss_pred             CCCeEEEeCCCCCcHHHHHHHHHHH
Q 018543           33 DCPHLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        33 ~~~~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      ++.++.+.|..|+||||++.++...
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~   29 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYY   29 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHh
Confidence            3456899999999999999999754

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.75  E-value=0.034  Score=46.12  Aligned_cols=29  Identities=31%  Similarity=0.485  Sum_probs=23.7

Q ss_pred             CCe-EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543           34 CPH-LLFYGPPGSGKKTLIMALLRQVFGPG   62 (354)
Q Consensus        34 ~~~-~ll~Gp~G~GKTtla~~la~~l~~~~   62 (354)
                      +|. ++++|.-|+||||++-.+|..+...+
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G   36 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQG   36 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCC
Confidence            344 88999999999999999998775443

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.68  E-value=0.35  Score=37.32  Aligned_cols=43  Identities=14%  Similarity=0.100  Sum_probs=27.4

Q ss_pred             CCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcc
Q 018543          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l  173 (354)
                      .+.-++++|=.+...++....+....+.  ....+|++.|..+.+
T Consensus        90 aD~allVVda~~G~~~QT~~~~~~a~~~--~~~~iIv~iNK~D~~  132 (196)
T d1d2ea3          90 LDGCILVVAANDGPMPQTREHLLLARQI--GVEHVVVYVNKADAV  132 (196)
T ss_dssp             CSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCCEEEEEECGGGC
T ss_pred             cCeEEEEEEcCCCCchhHHHHHHHHHHh--cCCcEEEEEeccccc
Confidence            4678999999998887665544443332  123477777776543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.65  E-value=0.026  Score=49.46  Aligned_cols=20  Identities=35%  Similarity=0.527  Sum_probs=18.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~   56 (354)
                      -+|+||+|+|||+++.++.-
T Consensus        28 ~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            58999999999999999974

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.61  E-value=0.26  Score=40.25  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=24.9

Q ss_pred             HHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        25 l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +..++--++...+++.|++|+|||+++..+++..
T Consensus        59 ID~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          59 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             HHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eeeeccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3333333444459999999999999999888754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.53  E-value=0.025  Score=48.11  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      |.|-|+-|+||||+++.+++.+
T Consensus         9 I~iEG~iGsGKSTl~~~L~~~l   30 (333)
T d1p6xa_           9 IYLDGVYGIGKSTTGRVMASAA   30 (333)
T ss_dssp             EEEECSTTSSHHHHHHHHHSGG
T ss_pred             EEEECCccCCHHHHHHHHHHHh
Confidence            8899999999999999999876

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.51  E-value=0.031  Score=43.25  Aligned_cols=22  Identities=36%  Similarity=0.419  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      +++.|..|+|||++++.+...-
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999997653

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.66  E-value=0.093  Score=43.03  Aligned_cols=26  Identities=27%  Similarity=0.493  Sum_probs=22.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~   62 (354)
                      ++++|.=|+||||++-.+|..+...+
T Consensus        23 ii~sGKGGVGKTT~a~nLA~~lA~~G   48 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAIAVRLADMG   48 (279)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            88999999999999988888775443

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.31  E-value=0.052  Score=41.68  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=18.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +++.|..|+|||++++.+...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            899999999999999987653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.06  E-value=0.13  Score=42.46  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCcHHHHHHHHHHHh
Q 018543           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        22 ~~~l~~~l~~~~~~~~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      .+.+..++-=++....++.||+|+|||+++..+++..
T Consensus        31 ~r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          31 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ceeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            3444444444555569999999999999999998865

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=90.95  E-value=0.033  Score=47.29  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhc
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVF   59 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~   59 (354)
                      |.|-|+-|+||||+++.+++.+.
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            78999999999999999998763

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.88  E-value=0.039  Score=46.72  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=18.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      |.|-|+-|+||||+++.+++.+
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEECCcCCCHHHHHHHHHHHh
Confidence            7899999999999999998765

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.72  Score=32.95  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=16.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 018543           37 LLFYGPPGSGKKTLIMALLRQV   58 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l   58 (354)
                      -+++||=.+||||-.-..++..
T Consensus         5 ~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           5 QVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEecccCHHHHHHHHHHHHH
Confidence            4789999999999655554433

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.98  E-value=0.16  Score=35.79  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=21.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~   60 (354)
                      ++|+|-+|+||+|+|+++...++.
T Consensus         9 i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           9 IVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             EEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            899999999999999999887755

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.56  E-value=0.088  Score=41.25  Aligned_cols=28  Identities=25%  Similarity=0.305  Sum_probs=23.1

Q ss_pred             eEEEeCC-CCCcHHHHHHHHHHHhcCCCC
Q 018543           36 HLLFYGP-PGSGKKTLIMALLRQVFGPGA   63 (354)
Q Consensus        36 ~~ll~Gp-~G~GKTtla~~la~~l~~~~~   63 (354)
                      .++++|- +|+||||++-.+|..+...+.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~   31 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGY   31 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCC
Confidence            4899999 499999999999998765543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.27  E-value=1.2  Score=37.39  Aligned_cols=40  Identities=10%  Similarity=0.299  Sum_probs=30.1

Q ss_pred             CceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCc
Q 018543          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (354)
Q Consensus       130 ~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~  172 (354)
                      +..++++|=+++........+....++   +.+.|++-|..++
T Consensus       121 D~allVVda~eGv~~qT~~~~~~a~~~---~~p~i~viNKiDr  160 (341)
T d1n0ua2         121 DGALVVVDTIEGVCVQTETVLRQALGE---RIKPVVVINKVDR  160 (341)
T ss_dssp             SEEEEEEETTTBSCHHHHHHHHHHHHT---TCEEEEEEECHHH
T ss_pred             CceEEEEecccCcchhHHHHHHHHHHc---CCCeEEEEECccc
Confidence            458999999999998888877777654   3566666677654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.13  E-value=0.63  Score=35.97  Aligned_cols=21  Identities=33%  Similarity=0.240  Sum_probs=18.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 018543           37 LLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +.+.|-+++|||||+.++...
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            889999999999999998653

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=89.10  E-value=0.23  Score=40.49  Aligned_cols=22  Identities=45%  Similarity=0.566  Sum_probs=19.3

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~   56 (354)
                      .++.+.|..|+||||++.++..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Confidence            3588999999999999999865

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.98  E-value=0.1  Score=43.46  Aligned_cols=28  Identities=14%  Similarity=0.164  Sum_probs=19.5

Q ss_pred             hhcceeeecCCCHHHHHHHHHHHHHHcC
Q 018543          179 SRCLNIRINSPTEEQIVKVLEFIAKKEG  206 (354)
Q Consensus       179 sR~~~i~~~~~~~~~~~~~L~~~~~~~~  206 (354)
                      |-|.-=.|-+.....-.++|...+++.+
T Consensus       180 s~cfg~PFl~~~p~~ya~lL~~ki~~~~  207 (318)
T d1j3ba1         180 SACFGAPFLPMHPGVYARMLGEKIRKHA  207 (318)
T ss_dssp             CGGGCGGGCSSCHHHHHHHHHHHHHHHC
T ss_pred             ehhhhccccccChhhHHHHHHHHHHhcC
Confidence            3454455777788888888888777654

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.76  E-value=0.25  Score=41.54  Aligned_cols=21  Identities=29%  Similarity=0.419  Sum_probs=17.8

Q ss_pred             cCCCCeEEEeCCCCCcHHHHH
Q 018543           31 EQDCPHLLFYGPPGSGKKTLI   51 (354)
Q Consensus        31 ~~~~~~~ll~Gp~G~GKTtla   51 (354)
                      .|....++-||+.|+|||.++
T Consensus        73 ~G~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          73 EGYNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             TTCCEEEEEECSTTSSHHHHH
T ss_pred             cCCCcceeeecccCCCCceec
Confidence            466555999999999999987

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=86.72  E-value=0.21  Score=40.54  Aligned_cols=27  Identities=30%  Similarity=0.437  Sum_probs=22.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPGA   63 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~~   63 (354)
                      +.++|.=|+||||++-.+|..+...+.
T Consensus         4 Iai~gKGGvGKTT~a~nLA~~LA~~G~   30 (269)
T d1cp2a_           4 VAIYGKGGIGKSTTTQNLTSGLHAMGK   30 (269)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHTTTC
T ss_pred             EEEECCCcCCHHHHHHHHHHHHHhCCC
Confidence            667999999999999999998865543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.62  E-value=0.48  Score=38.99  Aligned_cols=42  Identities=21%  Similarity=0.304  Sum_probs=35.2

Q ss_pred             CceEEEEeCCC-cCCHHHHHHHHHHHhhccCceeEEEEecCCC
Q 018543          130 GFKVLVLNEVD-KLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (354)
Q Consensus       130 ~~~viiiDE~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~  171 (354)
                      ...+++|||++ .|++..+..|.+.|++...+.-+|++|+++.
T Consensus       241 ~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~  283 (308)
T d1e69a_         241 PSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI  283 (308)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT
T ss_pred             cCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence            45799999996 5899999999999988777788888877764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.37  E-value=0.28  Score=38.79  Aligned_cols=42  Identities=10%  Similarity=0.331  Sum_probs=27.6

Q ss_pred             CCceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCCcc
Q 018543          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (354)
Q Consensus       129 ~~~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l  173 (354)
                      .+.-++++|=.+.+.+..... ++.+.+.  +.++|++.|..+.+
T Consensus        94 ~D~~ilVvda~~g~~~~~~~~-~~~~~~~--~~p~iivlNK~D~~  135 (227)
T d1g7sa4          94 ADLAILIVDINEGFKPQTQEA-LNILRMY--RTPFVVAANKIDRI  135 (227)
T ss_dssp             CSEEEEEEETTTCCCHHHHHH-HHHHHHT--TCCEEEEEECGGGS
T ss_pred             cceEEEEEecccCcccchhHH-HHHhhcC--CCeEEEEEECccCC
Confidence            466889999888888766544 4444432  35677777876543

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.07  E-value=0.15  Score=42.31  Aligned_cols=30  Identities=23%  Similarity=0.188  Sum_probs=22.3

Q ss_pred             hhhcceeeecCCCHHHHHHHHHHHHHHcCC
Q 018543          178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGL  207 (354)
Q Consensus       178 ~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~  207 (354)
                      -|-|.-=.|-+.....-.++|...+.+.+.
T Consensus       178 fs~cfg~PFl~~~p~~ya~lL~~ki~~~~~  207 (313)
T d2olra1         178 FSACFGAAFLSLHPTQYAEVLVKRMQAAGA  207 (313)
T ss_dssp             ECGGGCGGGCSSCHHHHHHHHHHHHHHHTC
T ss_pred             eeeccccccccccHHHHHHHHHHHHHhcCC
Confidence            345655678888889999999988877543

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.60  E-value=2.5  Score=29.22  Aligned_cols=74  Identities=9%  Similarity=0.121  Sum_probs=46.4

Q ss_pred             CceEEEEeCC-CcCCHHHHHHHHHHHhhccCceeEEEEecCCC--cccHHHhhhcceeeecCCCHHHHHHHHHHHHHHcC
Q 018543          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEG  206 (354)
Q Consensus       130 ~~~viiiDE~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~  206 (354)
                      .+.++++|-- ..++.  .+ +.+.+.+...+.++|++|...+  ....++..-+.-+-.+|.+.+++...+++.+++.|
T Consensus        45 ~~dlvl~D~~mP~~~G--~e-l~~~ir~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~rrG  121 (121)
T d1ys7a2          45 RPDAIVLDINMPVLDG--VS-VVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG  121 (121)
T ss_dssp             CCSEEEEESSCSSSCH--HH-HHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeeccCccc--HH-HHHHHHhcCCCCEEEEEEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence            3479999962 33432  22 2333333334566777665543  34455666666677789999999999998877643

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.35  E-value=0.47  Score=39.04  Aligned_cols=24  Identities=21%  Similarity=0.493  Sum_probs=21.3

Q ss_pred             CCCeEEEeCCCCCcHHHHHHHHHH
Q 018543           33 DCPHLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        33 ~~~~~ll~Gp~G~GKTtla~~la~   56 (354)
                      ..|.+++.|.-++||||++.++.+
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhC
Confidence            455699999999999999999976

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=84.30  E-value=1.2  Score=36.22  Aligned_cols=22  Identities=18%  Similarity=0.264  Sum_probs=18.0

Q ss_pred             CeEEEeCCCCCcHHHHHHHHHH
Q 018543           35 PHLLFYGPPGSGKKTLIMALLR   56 (354)
Q Consensus        35 ~~~ll~Gp~G~GKTtla~~la~   56 (354)
                      ..+++.|++|+|||+++..++.
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHH
T ss_pred             ceEeeccCCCCChHHHHHHHHh
Confidence            3488999999999999876543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.21  E-value=0.21  Score=41.60  Aligned_cols=32  Identities=16%  Similarity=0.014  Sum_probs=22.6

Q ss_pred             HHhhhcceeeecCCCHHHHHHHHHHHHHHcCC
Q 018543          176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL  207 (354)
Q Consensus       176 ~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~~~  207 (354)
                      +..|-|.-=.|-+.....-.++|..++.+.+.
T Consensus       177 ~tfs~cfg~PFl~~~p~~ya~~L~~~i~~~~~  208 (323)
T d1ii2a1         177 PIFSSCFGGPFLVRHATFYGEQLAEKMQKHNS  208 (323)
T ss_dssp             EEECGGGCGGGCCSCHHHHHHHHHHHHHHHTC
T ss_pred             cceeccccccccccChHHHHHHHHHHHHhcCc
Confidence            34455665667778888888888888876543

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.85  E-value=0.43  Score=37.80  Aligned_cols=26  Identities=19%  Similarity=0.190  Sum_probs=19.6

Q ss_pred             eEEEeCCCCCcHHHHHHHHHHHhcCC
Q 018543           36 HLLFYGPPGSGKKTLIMALLRQVFGP   61 (354)
Q Consensus        36 ~~ll~Gp~G~GKTtla~~la~~l~~~   61 (354)
                      ++++.+|.|+|||+++...+..+...
T Consensus        60 ~~~i~apTGsGKT~~~~~~~~~~~~~   85 (237)
T d1gkub1          60 SFAATAPTGVGKTSFGLAMSLFLALK   85 (237)
T ss_dssp             CEECCCCBTSCSHHHHHHHHHHHHTT
T ss_pred             CEEEEecCCChHHHHHHHHHHHHHHh
Confidence            49999999999998776665544433

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.13  E-value=0.3  Score=40.10  Aligned_cols=26  Identities=31%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (354)
Q Consensus        37 ~ll~Gp~G~GKTtla~~la~~l~~~~   62 (354)
                      +.++|.=|+||||++-.+|..+...+
T Consensus         5 IaisgKGGVGKTT~a~NLA~~LA~~G   30 (289)
T d2afhe1           5 CAIYGKGGIGKSTTTQNLVAALAEMG   30 (289)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            66799999999999988888775443

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=83.09  E-value=0.24  Score=41.76  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=19.4

Q ss_pred             HHHhcCCCCeEEEeCCCCCcHHHHH
Q 018543           27 KLVTEQDCPHLLFYGPPGSGKKTLI   51 (354)
Q Consensus        27 ~~l~~~~~~~~ll~Gp~G~GKTtla   51 (354)
                      ..+.+|....++-||..|+|||.+.
T Consensus        78 ~~~~~G~n~~i~aYGqTGSGKTyTm  102 (330)
T d1ry6a_          78 DLYENGCVCSCFAYGQTGSGKTYTM  102 (330)
T ss_dssp             HHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred             HHHhcCCCeEEEeeeccccccceee
Confidence            4444565545999999999999986

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=81.95  E-value=3  Score=28.60  Aligned_cols=69  Identities=13%  Similarity=0.291  Sum_probs=41.8

Q ss_pred             ceEEEEeCCCcCCHHHHHHHHHHHhhccCceeEEEEecCCC--cccHHHhhhcceeeecCCCHHHHHHHHHHH
Q 018543          131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFI  201 (354)
Q Consensus       131 ~~viiiDE~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~  201 (354)
                      +.++++|= ..-..+..+.+.++-+. .+++++|++|.+.+  ....+++.-+.-+-.+|.+.+++.+.++++
T Consensus        47 ~dliilD~-~mp~~~G~e~~~~ir~~-~~~~pvi~ls~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~v  117 (118)
T d1u0sy_          47 PDIVTMDI-TMPEMNGIDAIKEIMKI-DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV  117 (118)
T ss_dssp             CSEEEEEC-SCGGGCHHHHHHHHHHH-CTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred             CCEEEEec-CCCCCCHHHHHHHHHHh-CCCCcEEEEEccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence            47999993 21112233333333233 34567777776654  344556655666777899999999988764

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.81  E-value=0.44  Score=37.33  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=20.0

Q ss_pred             EEeCCCCCcHHHHHHHHHHHhcCCC
Q 018543           38 LFYGPPGSGKKTLIMALLRQVFGPG   62 (354)
Q Consensus        38 ll~Gp~G~GKTtla~~la~~l~~~~   62 (354)
                      +..|..|+||||++..+|..+...+
T Consensus         6 v~s~KGGvGKTtia~nlA~~la~~g   30 (232)
T d1hyqa_           6 VASGKGGTGKTTITANLGVALAQLG   30 (232)
T ss_dssp             EEESSSCSCHHHHHHHHHHHHHHTT
T ss_pred             EECCCCCChHHHHHHHHHHHHHhCC
Confidence            4458899999999999998775443

>d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458 {Haemophilus influenzae [TaxId: 727]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: MgsA/YrvN C-terminal domain-like
domain: Uncharacterized protein NTHI1458
species: Haemophilus influenzae [TaxId: 727]

Probab=81.15  E-value=1  Score=33.96  Aligned_cols=31  Identities=13%  Similarity=0.171  Sum_probs=27.0

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhhHhhCCCChhH
Q 018543          298 LYELLKRLDAEIKHEVCHWAAYYEHKMRRGNKAIF  332 (354)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  332 (354)
                      .++|+|+    .|++..+++.+|..||..+++|+.
T Consensus         8 iSA~~KS----iRgSD~dAaly~larml~~GeDp~   38 (184)
T d3bgea1           8 ISALHKS----VRGSAPDAALYWYARILTAGGDPL   38 (184)
T ss_dssp             HHHHHHH----HHTTCHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHH----HhcCCccHHHHHHHHHHHcCCChH
Confidence            3467887    889999999999999999998885

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=80.86  E-value=0.73  Score=38.82  Aligned_cols=40  Identities=25%  Similarity=0.460  Sum_probs=27.8

Q ss_pred             CCCccc----CHHHHHHHHHHHh---cCCCCeEEEeCCCCCcHHHHH
Q 018543           12 LDQVIV----HQDIAQNLKKLVT---EQDCPHLLFYGPPGSGKKTLI   51 (354)
Q Consensus        12 ~~~~~g----~~~~~~~l~~~l~---~~~~~~~ll~Gp~G~GKTtla   51 (354)
                      ||.+.+    |+++.+.+...+.   .|....++-||..|+|||..+
T Consensus        54 FD~vf~~~~~q~~vy~~v~~~v~~~l~G~n~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          54 FDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             ESEEECTTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred             cCeEeCCCCCHHHHHHHhhhhhcchhcccccceeeeeccCCcccccc
Confidence            666655    5666665555554   355444889999999999876

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=80.44  E-value=3.5  Score=28.32  Aligned_cols=73  Identities=16%  Similarity=0.198  Sum_probs=46.8

Q ss_pred             CceEEEEeC-CCcCCHHHHHHHHHHHhhccCceeEEEEecCCC--cccHHHhhhcceeeecCCCHHHHHHHHHHHHHHc
Q 018543          130 GFKVLVLNE-VDKLSREAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE  205 (354)
Q Consensus       130 ~~~viiiDE-~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~~L~~~~~~~  205 (354)
                      .+.+|++|= ...++.  .+ +.+.+....+..++|++|...+  ....++..-+.-+-.+|++.+++...+++.+++.
T Consensus        43 ~~dlillD~~mP~~~G--~~-~~~~lr~~~~~~~ii~it~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~r~  118 (120)
T d1p2fa2          43 AFHVVVLDVMLPDYSG--YE-ICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE  118 (120)
T ss_dssp             CCSEEEEESBCSSSBH--HH-HHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCcccccch--hH-HHHHHhhcCCCCcEEEEecCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHc
Confidence            458999995 233432  22 3444443345567777776554  3445555556677789999999999998877643

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=80.41  E-value=0.8  Score=37.73  Aligned_cols=37  Identities=19%  Similarity=0.490  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhc-----CCCCeEEEeCCCCCcHHHHHHHHHHH
Q 018543           21 IAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQ   57 (354)
Q Consensus        21 ~~~~l~~~l~~-----~~~~~~ll~Gp~G~GKTtla~~la~~   57 (354)
                      +...|...++.     -..|.+++.|..++||||++.++.+.
T Consensus         6 ~~n~l~d~~~~~~~~~~~lP~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_           6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             HHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhCcCCCCCCeEEEEeCCCCCHHHHHHHHhCC
Confidence            34455554442     23456999999999999999999764