Citrus Sinensis ID: 018597

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEFVHS
Secondary Structure (PSIPRED)
cccccccccccccccEEccccccEEEccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHEEEHHHHHHcccccccccEEccccccccccccccccccEEEEcccHHccccccccccccHHHEEEEEEEEEEccccccccEEEEEEEccccccccccEEEEEEEEEcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mayrrsltTRATLIARaynpsfnyiiydhdhkqkspdetlsrtnihsfiqsrsfgnslnnsyglgnffhgqrvsqfslvpsvgSAFCRYMSttvgegadkiELISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMqdkamdpmavADGQKRMQNLFKeygvhpltplkglfiqgpvFISFFLAISNMAekvpsfknggafwftdlstpdsfyilpiLTGLSFLITVECNmqeglegnpaavTMKNISRGFavlsipltmtfpKAIFCYWITSNFFSLVYGLGEFVHS
Flexible Loop (DISEMBL)
mayrrslttrATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLinqlkstskltlmrPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEFVHS
Low Complexity Region (SEG)
MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRsfgnslnnsyglgnfFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIANQapavnevaiaaaDSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEFVHS
Disordered region (IsUnstruct)
*******TTRATLIARAYNPSFNYIIYDH***************IHSFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKST**********************************QNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEFV**
Disordered Region (DISOPRED)
*****************YNPSFNY**********************SFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLVPSVGSAF********************VADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSK**LMRP**************************QNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITV******************NISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEFVH*
Disordered Region (DISEMBL)
********TRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEFVHS
Disordered Region (DISPRO)
MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEFVH*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEFVHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
Q42191	429	Mitochondrial inner membr	yes	no	0.963	0.792	0.583	1e-120
Q9SKD3	431	Mitochondrial inner membr	no	no	0.943	0.772	0.538	2e-97
O43092	409	Mitochondrial inner membr	yes	no	0.606	0.523	0.363	2e-31
Q15070	435	Mitochondrial inner membr	yes	no	0.665	0.540	0.303	2e-29
Q8BGA9	433	Mitochondrial inner membr	yes	no	0.679	0.554	0.315	4e-29
Q3SYV3	441	Mitochondrial inner membr	yes	no	0.626	0.501	0.293	9e-26
O14300	374	Mitochondrial inner membr	no	no	0.589	0.556	0.347	5e-23
Q926Q5	287	Membrane protein insertas	yes	no	0.549	0.675	0.308	5e-19
Q814F4	258	Membrane protein insertas	yes	no	0.501	0.686	0.304	6e-19
Q81JH1	255	Membrane protein insertas	yes	no	0.549	0.760	0.294	6e-19

>sp|Q42191|OXA1_ARATH Mitochondrial inner membrane protein OXA1 OS=Arabidopsis thaliana GN=OXA1 PE=2 SV=2

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/348 (58%), Positives = 267/348 (76%), Gaps = 8/348 (2%)

Query: 1   MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNN 60
           MA+R++L+ R+ L AR   P ++ I  + DH++ S  +  S+ + HSF+  RS  NS + 
Sbjct: 1   MAFRQTLSIRSRLFARRNQPVYHIIPRESDHERDSFCQETSQRSYHSFLHQRSVNNS-DF 59

Query: 61  SYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAI- 119
           S   G   H        L P+ G AF RYMS+  G G++KI ++SD+A+V T++T+Q + 
Sbjct: 60  SKVSGGSLH------LPLAPTSGFAFYRYMSSAPGVGSEKIGVMSDIAEVITDSTLQDVP 113

Query: 120 ANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLIN 179
           A  A AV+EV +AAADSF P+AALQ  ID +H FTGF WWASI+V T+LIR++TVPLLI 
Sbjct: 114 AQAAAAVSEVTLAAADSFFPIAALQQCIDMVHTFTGFEWWASIVVATILIRSSTVPLLIK 173

Query: 180 QLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQ 239
           Q+K T+KL LMRPRLE I+++MQ+K MD + +A+GQK+M+NLFKEYGV P TP+KG+FIQ
Sbjct: 174 QMKDTTKLALMRPRLESIREEMQNKGMDSVTMAEGQKKMKNLFKEYGVTPFTPMKGMFIQ 233

Query: 240 GPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEG 299
           GP+FI FFLAI NMAEKVPSF+ GGA WFTDL+TPDS YILP++TGL+FLITVECN QEG
Sbjct: 234 GPLFICFFLAIRNMAEKVPSFQTGGALWFTDLTTPDSLYILPVITGLTFLITVECNAQEG 293

Query: 300 LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGL 347
           +EGNP A T+K + R FA+L++P+TM+FP+AIFCYWITSN FSL+YGL
Sbjct: 294 MEGNPMAGTVKTVCRVFALLTVPMTMSFPQAIFCYWITSNLFSLMYGL 341

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for activity and assembly of cytochrome c oxidase.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKD3|OXA1L_ARATH Mitochondrial inner membrane protein OXA1-like OS=Arabidopsis thaliana GN=OXA1L PE=2 SV=1

 Score =  355 bits (912), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 188/349 (53%), Positives = 242/349 (69%), Gaps = 16/349 (4%)

Query: 5   RSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNNSYGL 64
           R +T R  L+ R   PS  ++I D   + KS     S T I   +       + N +  L
Sbjct: 6   RGITKRVNLLQRRVYPSCGHLIRDDRDETKSGS---SDTMIREVL-------ARNGTNKL 55

Query: 65  GNFFHGQRVSQFSLVP-SVGSAFCRYMSTTVGEGADKIELISDVA-DVFTETTVQAIANQ 122
            + F  +    F+  P  +G + CR+MS+T  E +DK++ I  VA +V  +  ++A+   
Sbjct: 56  SSMFADRHYQSFATGPLGLGLSSCRHMSSTPPEWSDKVDGIDFVATEVVPDEIIEAVTTT 115

Query: 123 A----PAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLI 178
           +    PA+NEVAIAAADS  PVAALQH IDA+H+FTG NWWASI +TT+LIR  T+P+L+
Sbjct: 116 SQAVVPAINEVAIAAADSAFPVAALQHLIDAVHSFTGLNWWASIALTTVLIRGVTIPILL 175

Query: 179 NQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFI 238
           NQLK+T KL ++RP+LEE++Q+M  KA DP A+A+GQ+RMQ LFKE+GV P TPLKGL I
Sbjct: 176 NQLKATYKLNVLRPQLEELRQEMSTKAQDPEAMAEGQRRMQLLFKEHGVTPFTPLKGLII 235

Query: 239 QGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQE 298
           QGP+FISFF AI NMAEKVPSFK GG  WFTDL+T D+ YILP+LT ++FLI VE NMQE
Sbjct: 236 QGPIFISFFFAIRNMAEKVPSFKTGGTLWFTDLTTTDTTYILPLLTAVTFLIMVESNMQE 295

Query: 299 GLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGL 347
           GLEGNP A TMK  SR  A LSIP+ +   KA+FCYW+TSN F+LVYGL
Sbjct: 296 GLEGNPVAGTMKKFSRIIAFLSIPVLIGIEKALFCYWLTSNLFTLVYGL 344

Probably required for the insertion of integral membrane proteins into the mitochondrial inner membrane. May participate in the activity and assembly of cytochrome oxidase.

Arabidopsis thaliana (taxid: 3702)

>sp|O43092|OXA12_SCHPO Mitochondrial inner membrane protein oxa1-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oxa102 PE=2 SV=2

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 9/223 (4%)

Query: 130 AIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTL 189
           ++ A+ SFLP   LQ+ ++ +H ++G  WWASI    + +R A  P+++  +K+++KL +
Sbjct: 87  SVLASFSFLPHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFPIMLKMMKTSAKLAI 146

Query: 190 MRPRLEE----IKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFIS 245
           + P++ E    + +   +   + M  A  Q  +QNL+K   V+PL  L     QG +FIS
Sbjct: 147 INPKVAEHMSVLSKAKAEGNSELMMQATTQ--IQNLYKVNNVNPLNLLSAPVFQGILFIS 204

Query: 246 FFLAISNMAE-KVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNP 304
           FF A+  MA   V  F +GG +W  DLS PD  +I P+  GL  L+ +E   + G     
Sbjct: 205 FFYALKTMAGVPVEGFTDGGFWWVNDLSQPDPLHIFPVANGLLMLLNIELGSETGSNKVA 264

Query: 305 AAVTMKNISRGFAVLSIPL-TMTFPKAIFCYWITSNFFSLVYG 346
            + +MK   R F  L+ PL TM FP AIF YW  SN FS+  G
Sbjct: 265 MSPSMKKFFR-FLCLASPLFTMNFPMAIFMYWFPSNVFSVFQG 306

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome c oxidase. It is essential for viability while oxa101 is not. When both are deleted the cell is non-viable, suggesting that oxa101 act as a back-up for oxa102.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q15070|OXA1L_HUMAN Mitochondrial inner membrane protein OXA1L OS=Homo sapiens GN=OXA1L PE=1 SV=3

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 126/244 (51%), Gaps = 9/244 (3%)

Query: 104 ISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASII 163
           + +VA   T   VQ  A Q+ A  E+ +    S+ PV  +Q+ ++ MH   G  WW +I 
Sbjct: 91  VPEVASGETADVVQTAAEQSFA--ELGLG---SYTPVGLIQNLLEFMHVDLGLPWWGAIA 145

Query: 164 VTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAM--DPMAVADGQKRMQNL 221
             T+  R    PL++   +  +++    P +++    +++  +  D +        M   
Sbjct: 146 ACTVFARCLIFPLIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALY 205

Query: 222 FKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAE-KVPSFKNGGAFWFTDLSTPDSFYIL 280
            K++G+    PL     Q P+FISFF+A+  MA   VPS + GG +WF DL+  D  YIL
Sbjct: 206 QKKHGIKLYKPLILPVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPIYIL 265

Query: 281 PILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNF 340
           P+    +    +E   + G++ +     M+N+ R   ++++P+TM FP A+F YW++SN 
Sbjct: 266 PLAVTATMWAVLELGAETGVQSSDLQ-WMRNVIRMMPLITLPITMHFPTAVFMYWLSSNL 324

Query: 341 FSLV 344
           FSLV
Sbjct: 325 FSLV 328

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome oxidase. Required for the correct biogenesis of ATP synthase and complex I in mitochondria.

Homo sapiens (taxid: 9606)

>sp|Q8BGA9|OXA1L_MOUSE Mitochondrial inner membrane protein OXA1L OS=Mus musculus GN=Oxa1l PE=2 SV=1

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 130/266 (48%), Gaps = 26/266 (9%)

Query: 104 ISDVADVFTETTVQAI----ANQAPA-VNEVAIA-AAD----------------SFLPVA 141
           IS  A +F E  VQA     A   PA V EVA   AAD                S+ PV 
Sbjct: 59  ISTSATLFAEAQVQAPPVIPATSIPAAVPEVASGGAADVVQCATEPSFTELGLGSYTPVG 118

Query: 142 ALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDM 201
            +Q+ ++ +H   G  WW +I   T+L R    PL++   +  +K+    P +++    +
Sbjct: 119 LIQNLLEYIHVDLGLPWWGAIATCTVLARCLVFPLIVKGQREAAKIHNHMPEMQKFSARI 178

Query: 202 QDKAM--DPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAE-KVP 258
           ++  +  D          M    K++ +  L PL     Q PVFISFF+A+  MA   VP
Sbjct: 179 REAKLAGDQAEFYKATIEMTRYQKKHDIKLLRPLILPLTQAPVFISFFIALREMANLPVP 238

Query: 259 SFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAV 318
           S + GG +WF DL+  D  Y+LP++   +    +E   + G++ N     M+NI R   +
Sbjct: 239 SLQTGGLWWFQDLTVSDPIYVLPLVVTATMWCVLELGAETGVQSNDLQF-MRNIIRVMPL 297

Query: 319 LSIPLTMTFPKAIFCYWITSNFFSLV 344
           + +P+T+ FP A+F YW++SN FSL 
Sbjct: 298 VVLPVTIHFPSAVFMYWLSSNVFSLC 323

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome oxidase. Required for the correct biogenesis of ATP synthase and complex I in mitochondria.

Mus musculus (taxid: 10090)

>sp|Q3SYV3|OXA1L_BOVIN Mitochondrial inner membrane protein OXA1L OS=Bos taurus GN=OXA1L PE=2 SV=1

 Score =  117 bits (294), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 4/225 (1%)

Query: 122 QAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQL 181
           QA A    A     S+ PV  +Q+ ++ MH   G  WW +I   T+L R    PL++   
Sbjct: 104 QAAAEQSFAELGLGSYTPVGLIQNLLEFMHVNLGLPWWGAIAACTVLARCLVFPLIVKGQ 163

Query: 182 KSTSKLTLMRPRLEEIKQDMQDKAM--DPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQ 239
           +  +K+    P +++    +++  +  +          M    K++ +    PL     Q
Sbjct: 164 REAAKIHNHLPEIQKFSARIREAKLTGNHTEFYRASSEMTFYQKKHDIKLFRPLILPLTQ 223

Query: 240 GPVFISFFLAISNMAE-KVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQE 298
            P+FISFF+A+  MA   VPS + GG +WF DL+  D  Y+LP++   +    +E   + 
Sbjct: 224 APIFISFFIALREMANLPVPSLQTGGLWWFQDLTLSDPIYVLPLVVTATMWGVLELGAET 283

Query: 299 GLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSL 343
           G++ +     M+N  R   +  +P+T+ FP A+F YW++SN FSL
Sbjct: 284 GMQSSDLQ-WMRNFIRLMPLAVLPITIHFPTAVFMYWLSSNMFSL 327

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome oxidase. Required for the correct biogenesis of ATP synthase and complex I in mitochondria.

Bos taurus (taxid: 9913)

>sp|O14300|OXA11_SCHPO Mitochondrial inner membrane protein oxa1-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oxa101 PE=2 SV=1

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 122/236 (51%), Gaps = 28/236 (11%)

Query: 128 EVAIAAAD---SFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKST 184
           EV+ A +    S+ P A +Q+    ++ + G  WW SII+TTL +R A  P++I   +++
Sbjct: 53  EVSTATSGFNPSWWPYALIQNTAYTINVYAGAPWWVSIILTTLGVRLALTPVMIASFRNS 112

Query: 185 SKLTLMRP----RLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQG 240
           +KL++++P     LE IK    D   D +A+      ++ ++ ++ V+P         Q 
Sbjct: 113 TKLSVIQPEMKKELEAIKTAKLDN--DQLALNQHSIALRGIYLKHNVNPFAIFILPLTQS 170

Query: 241 PVFISFFLAISNMAE-KVPSFKNGGAFWFTDLSTPDSFYILPIL-TGLSFLITVECNMQE 298
            VF SFF AI  M+   V  F  GG  WF DLS PD + ILPI+  GL F          
Sbjct: 171 AVFFSFFYAIRKMSRLSVDGFTTGGLAWFKDLSIPDPYCILPIINAGLMF---------S 221

Query: 299 GLEGNPA--AVTMKNIS--RGF----AVLSIPLTMTFPKAIFCYWITSNFFSLVYG 346
           G++ N A  A T+ N +  R F     +LS  LT   P AIF YWI S+ F++V G
Sbjct: 222 GMQMNRANTASTIGNSTNWRTFFFLCCLLSPLLTAKLPAAIFMYWIPSSLFNIVQG 277

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome c oxidase. Not essential for viability, while oxa102 is essential. When both genes are deleted the cell is non-viable, suggesting that oxa101 act as a back-up for oxa102.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q926Q5|YIDC2_LISIN Membrane protein insertase YidC 2 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=yidC2 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 10/204 (4%)

Query: 140 VAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQ 199
           V  L   I    +  G N+   IIV T+LIR   +PL+I QLKS   +T ++P+++E+++
Sbjct: 47  VFPLSWVITWFSDLFGGNYAVGIIVVTILIRLLIMPLMIKQLKSQKAMTSLQPKIKELQE 106

Query: 200 DMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPS 259
               K  D       Q+    L++E  V+P+     L IQ P+ + F+ AIS  AE    
Sbjct: 107 KYSSK--DNETKQKLQQETMRLYQENSVNPMMGCLPLLIQMPILLGFYQAISRTAE---- 160

Query: 260 FKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVL 319
            K     W   L  PD +YILPI+  L+  ++ + +M    + N    +M  I     V+
Sbjct: 161 IKTDTFLWM-QLGNPDPYYILPIVAALTTFLSSKISMMGQTQQNK---SMAMIVYIMPVM 216

Query: 320 SIPLTMTFPKAIFCYWITSNFFSL 343
            + + +T P A+  YWI  N F++
Sbjct: 217 ILFMGITLPSALALYWIIGNIFTV 240

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins.

Listeria innocua serovar 6a (strain CLIP 11262) (taxid: 272626)

>sp|Q814F4|YIDC2_BACCR Membrane protein insertase YidC 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=yidC2 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 10/187 (5%)

Query: 157 NWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQK 216
           N+  +I++TTL+IR A +PL+I Q KST  +  ++P + ++K+    K  D       Q+
Sbjct: 58  NYGLAIVITTLIIRFALLPLMIKQTKSTKAMQALQPEMVKLKEKYSSK--DQATQQKLQQ 115

Query: 217 RMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDS 276
            M  L+++ GV+PL     +F+Q P+  +F+ AI   AE     K     WF DL   D 
Sbjct: 116 EMMQLYQKNGVNPLAGCLPIFVQMPILFAFYHAIMRTAE----IKQHSFLWF-DLGHADP 170

Query: 277 FYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWI 336
           FYILP++  ++  I  +  M      NP    M  +     ++ +   + FP A+  YW+
Sbjct: 171 FYILPVVAAITTFIQQKLAMAGTAGQNPQMAMMLWL---MPIMILIFAINFPAALSLYWV 227

Query: 337 TSNFFSL 343
             N F +
Sbjct: 228 VGNIFGI 234

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins.

Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)

>sp|Q81JH1|YIDC2_BACAN Membrane protein insertase YidC 2 OS=Bacillus anthracis GN=yidC2 PE=3 SV=1

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 10/204 (4%)

Query: 140 VAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQ 199
           V  L   I    N  G N+  +I+VTTL+IR A +PL+I Q KST  +  ++P + ++K+
Sbjct: 41  VYPLSQLITYFANLFGSNYGLAIVVTTLIIRFALLPLMIKQTKSTKAMQALQPEMVKLKE 100

Query: 200 DMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPS 259
               K  D       Q+ M  L+++ GV+PL     +F+Q P+  +F+ AI   +E    
Sbjct: 101 KYSSK--DQATQQKLQQEMMQLYQKNGVNPLAGCLPIFVQMPILFAFYHAIMRTSE---- 154

Query: 260 FKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVL 319
                  WF DL   D +YILP++  ++  I  +  M      NP    M  +     ++
Sbjct: 155 ISKHTFLWF-DLGQADPYYILPVVAAITTFIQQKLAMAGTAGQNPQMAMMLWL---MPIM 210

Query: 320 SIPLTMTFPKAIFCYWITSNFFSL 343
            +   + FP A+  YW+  N F +
Sbjct: 211 ILIFAINFPAALSLYWVVGNIFGI 234

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins.

Bacillus anthracis (taxid: 1392)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
224053781	459	inner membrane protein [Populus trichoca	0.988	0.760	0.694	1e-143
356521711	430	PREDICTED: mitochondrial inner membrane	0.977	0.802	0.663	1e-135
356548765	431	PREDICTED: mitochondrial inner membrane	0.966	0.791	0.653	1e-131
356521323	431	PREDICTED: mitochondrial inner membrane	0.966	0.791	0.661	1e-130
449464056	446	PREDICTED: mitochondrial inner membrane	0.977	0.773	0.649	1e-129
255537783	421	cytochrome oxidase biogenesis protein, p	0.960	0.805	0.647	1e-126
297797165	429	hypothetical protein ARALYDRAFT_496379 [	0.963	0.792	0.591	1e-122
255579269	423	cytochrome oxidase biogenesis protein, p	0.960	0.801	0.641	1e-119
359474092	458	PREDICTED: mitochondrial inner membrane	0.960	0.740	0.608	1e-118
297742331	443	unnamed protein product [Vitis vinifera]	0.960	0.765	0.608	1e-118

>gi|224053781|ref|XP_002297976.1| inner membrane protein [Populus trichocarpa] gi|222845234|gb|EEE82781.1| inner membrane protein [Populus trichocarpa]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 245/353 (69%), Positives = 288/353 (81%), Gaps = 4/353 (1%)

Query: 1   MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNS--- 57
           MAY RSL+TRA ++ R YN SF+YI++D D K  S +E  S   + +  Q RSFG+S   
Sbjct: 1   MAYVRSLSTRANIVRRRYNASFSYILHDDDRKHNSIEEGPSSKGMSNLFQQRSFGSSRKR 60

Query: 58  LNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQ 117
            +N+  +  FFH +R    SL PS+G +FCR MST +G G++ IELI+DVADV T+TT +
Sbjct: 61  FDNNLAVFGFFHNRRCLDLSLSPSIGVSFCRDMST-IGGGSENIELINDVADVLTDTTFE 119

Query: 118 AIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLL 177
           A++ QAP VNEVAIAAADS+ PVAALQH IDA+H+FTGFNWWASIIVTTLLIR ATVPLL
Sbjct: 120 AVSAQAPVVNEVAIAAADSYFPVAALQHVIDAVHSFTGFNWWASIIVTTLLIRGATVPLL 179

Query: 178 INQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLF 237
           INQLK+T+KLTLMRP LEEI+Q M DKAMDPMA+A+GQK+M+ LFKEYGV PLTPLKGLF
Sbjct: 180 INQLKATTKLTLMRPHLEEIRQQMSDKAMDPMALAEGQKQMKKLFKEYGVSPLTPLKGLF 239

Query: 238 IQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQ 297
           IQGP+F+SFFLAISNM EKVPSFK+GGA+WF DL+TPDS YILPILTGL+F ITVECNMQ
Sbjct: 240 IQGPIFVSFFLAISNMTEKVPSFKSGGAYWFLDLTTPDSLYILPILTGLTFWITVECNMQ 299

Query: 298 EGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF 350
           EGLEGNP A TMK +SR FAV S+PLTM FP AIFCYW+TSN FSL YGLG  
Sbjct: 300 EGLEGNPIAATMKKVSRVFAVASVPLTMGFPNAIFCYWVTSNLFSLFYGLGNL 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521711|ref|XP_003529495.1| PREDICTED: mitochondrial inner membrane protein OXA1-like [Glycine max]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/348 (66%), Positives = 284/348 (81%), Gaps = 3/348 (0%)

Query: 1   MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNN 60
           MA+RR L  R  L+ R  +PSF+Y+++ ++ K++ PDE  S   I + IQ R FGNS++ 
Sbjct: 1   MAHRRCLLIRGNLMNRKCHPSFSYVLHSNEGKRECPDEKSSSAGISNSIQRRMFGNSVDG 60

Query: 61  SYGLGNFFHGQRV-SQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAI 119
           S    ++  GQR+ S   L P  G  FCR+MST V +G+DKI++++D+ADV  +TTV+A+
Sbjct: 61  SMRFVSY-SGQRMHSNRFLSPYSGYNFCRHMST-VNQGSDKIDIMTDIADVLKDTTVEAV 118

Query: 120 ANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLIN 179
            +QAP V EVAIAAADS LPV ALQ+ IDA+H++TG NWWASI++TTLLIR+ATVPLLIN
Sbjct: 119 TSQAPIVKEVAIAAADSALPVKALQYIIDAVHSYTGLNWWASIVLTTLLIRSATVPLLIN 178

Query: 180 QLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQ 239
           QLK+TSKLT+MRP +E+IKQ+++DKAMDP+AVA+GQKRM+ LFKEYG  P TPLKGLFIQ
Sbjct: 179 QLKATSKLTIMRPHMEKIKQEIEDKAMDPVAVAEGQKRMKKLFKEYGASPFTPLKGLFIQ 238

Query: 240 GPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEG 299
           GPVFISFFLAI NMAEK+PSFK+GGA+WF DL+TPDS YILP+LT LSFLITVECNMQEG
Sbjct: 239 GPVFISFFLAIRNMAEKMPSFKHGGAYWFVDLTTPDSLYILPVLTALSFLITVECNMQEG 298

Query: 300 LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGL 347
           LEGNP A TMK  SRG AVL++P TM FPKAIFCYWITSN FSLVYGL
Sbjct: 299 LEGNPVAGTMKKFSRGLAVLTVPFTMGFPKAIFCYWITSNLFSLVYGL 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548765|ref|XP_003542770.1| PREDICTED: mitochondrial inner membrane protein OXA1-like [Glycine max]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/349 (65%), Positives = 280/349 (80%), Gaps = 8/349 (2%)

Query: 1   MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNN 60
           MAYRR L  R +L+ R  + SF+Y+++ ++ K++  +E  S   +  F Q+RSFG+SLN 
Sbjct: 1   MAYRRCLLIRGSLVDRRCHLSFSYVLHSNEGKRERTNEKSSSGGVGDFTQTRSFGSSLNG 60

Query: 61  SYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKI--ELISDVADVFTETTVQA 118
             G   FF   R  +F L P  G  FC+YMST V  G+DKI  ++++DVADV  +TT+ +
Sbjct: 61  QMG---FFSPSR-DRF-LSPCTGYGFCQYMST-VNRGSDKIGSDVMTDVADVLADTTMDS 114

Query: 119 IANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLI 178
           +A+QAP VNEVAIAAADSFLPV ALQ+ IDA+H +TG NWWA+I++TTLLIRTATVPLLI
Sbjct: 115 VASQAPVVNEVAIAAADSFLPVQALQYVIDAVHFYTGLNWWAAIVLTTLLIRTATVPLLI 174

Query: 179 NQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFI 238
           NQLK+TSKLTLMRP LEEIKQ+M+   MDP+AVA GQ++M+ LFKEYGV P TPLKGLFI
Sbjct: 175 NQLKATSKLTLMRPHLEEIKQEMEGLTMDPVAVAKGQQQMKKLFKEYGVSPFTPLKGLFI 234

Query: 239 QGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQE 298
           QGP+F+SFFLAI+NMAEKVPSFK+GGA WF DLSTPD+ Y+ P+LT LSFLITVECNMQE
Sbjct: 235 QGPIFVSFFLAITNMAEKVPSFKHGGASWFIDLSTPDALYVFPVLTALSFLITVECNMQE 294

Query: 299 GLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGL 347
           G+EGNP A TMKN+SRG AVL++P TM FPKAIFCYW+TSN FSLVYGL
Sbjct: 295 GMEGNPVAGTMKNVSRGLAVLTVPFTMGFPKAIFCYWVTSNLFSLVYGL 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521323|ref|XP_003529306.1| PREDICTED: mitochondrial inner membrane protein OXA1-like [Glycine max]

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/349 (66%), Positives = 275/349 (78%), Gaps = 8/349 (2%)

Query: 1   MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNN 60
           MAYRR L  R  L+ R  +PSF+Y+++    K ++ +E  S      F Q+RSFG+SLN 
Sbjct: 1   MAYRRCLLIRGNLVDRRCHPSFSYVLHSDQGKHENTNEKSSSGGDGDFTQTRSFGSSLNG 60

Query: 61  SYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKI--ELISDVADVFTETTVQA 118
             G   FF   R  +F L P     FCRYMST V +G+DKI  ++++DVADV T TT+ A
Sbjct: 61  PMG---FFAHSR-DRF-LSPCSRYGFCRYMST-VNQGSDKISSDVMTDVADVLTNTTMDA 114

Query: 119 IANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLI 178
           + +QAP VNEVAIAAADSFLPV ALQ+ IDA+H++TG NWWA+I++TTLLIRTATVPLLI
Sbjct: 115 VVSQAPVVNEVAIAAADSFLPVQALQYVIDAVHSYTGLNWWAAIVLTTLLIRTATVPLLI 174

Query: 179 NQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFI 238
           NQLK+TSKLTLMRP LEEIKQ M+   MDP+AVA GQ++M+ LFKEYGV P TPLKGLFI
Sbjct: 175 NQLKATSKLTLMRPHLEEIKQQMEGLTMDPVAVAKGQQQMKKLFKEYGVSPFTPLKGLFI 234

Query: 239 QGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQE 298
           QGP+F+SFFLAI+NMAEKVPSFK+GGA WF DLSTPD+ YI P LT LSFLITVECNMQE
Sbjct: 235 QGPIFVSFFLAITNMAEKVPSFKHGGASWFIDLSTPDALYIFPALTALSFLITVECNMQE 294

Query: 299 GLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGL 347
           G+EGNP A TMKN+SRG AVL++P TM FPKAIFCYW+TSN FSLVYGL
Sbjct: 295 GMEGNPVAGTMKNVSRGLAVLTVPFTMGFPKAIFCYWVTSNLFSLVYGL 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464056|ref|XP_004149745.1| PREDICTED: mitochondrial inner membrane protein OXA1-like [Cucumis sativus] gi|449505074|ref|XP_004162368.1| PREDICTED: mitochondrial inner membrane protein OXA1-like [Cucumis sativus]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/348 (64%), Positives = 280/348 (80%), Gaps = 3/348 (0%)

Query: 1   MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDE-TLSRTNIHSFIQSRSFGNSLN 59
           MAYRRSL TRA LIAR Y+PS        D K++  DE ++S   I+SF+Q RSFG S N
Sbjct: 1   MAYRRSLCTRANLIARQYHPSIGVFGQTDDRKKQHLDEDSISHDRINSFLQRRSFGTSFN 60

Query: 60  NSYGLGNFFH-GQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQA 118
            SY   NFF  G++     + PS GS FCRYMS+T+GEG++ IE +S+VA+V T+TTVQ+
Sbjct: 61  KSY-RSNFFDLGRKYPNTFVSPSAGSFFCRYMSSTIGEGSENIEFMSNVAEVLTDTTVQS 119

Query: 119 IANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLI 178
            A+QA A NEV +AAADSFLPV  +Q+FIDA+H++TG NWWA I++TTLLIR AT PLLI
Sbjct: 120 AASQAAAANEVVLAAADSFLPVKGVQYFIDAIHSYTGLNWWACIVLTTLLIRGATFPLLI 179

Query: 179 NQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFI 238
           NQLKST+KLTL+RP LEE+K++MQ+K MDP AVA+GQ++M+NLF E+GV P TPLKGLFI
Sbjct: 180 NQLKSTAKLTLLRPHLEEVKKEMQEKGMDPGAVAEGQRKMKNLFNEFGVSPFTPLKGLFI 239

Query: 239 QGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQE 298
           QGPVFISFFLA+SNMAEK+PSFKNGGA+WF DL+TPD+ YI P+LT ++F +TVE NMQE
Sbjct: 240 QGPVFISFFLAVSNMAEKMPSFKNGGAYWFVDLTTPDTMYIFPVLTAVTFWVTVEYNMQE 299

Query: 299 GLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYG 346
           G+EGNP A TMKN+ RG A+ ++PLTM FPKAIFCYW+TSN FSL YG
Sbjct: 300 GMEGNPIAGTMKNVMRGLAIATVPLTMHFPKAIFCYWVTSNLFSLAYG 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537783|ref|XP_002509958.1| cytochrome oxidase biogenesis protein, putative [Ricinus communis] gi|223549857|gb|EEF51345.1| cytochrome oxidase biogenesis protein, putative [Ricinus communis]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/352 (64%), Positives = 270/352 (76%), Gaps = 13/352 (3%)

Query: 1   MAYRRSLTTRATLIARAYNPSFNYIIYDH--DHKQKSPDETLSRTNIHSFIQSRSFGNSL 58
           MAY RSLTTR+TL+ R  +PSF + ++ H  DH   S DE        S +Q R F +  
Sbjct: 1   MAYIRSLTTRSTLLKRHCHPSFTFFLHQHSDDHNNTSIDE-------FSSVQGRGFHSKS 53

Query: 59  NNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGAD-KIELISDVADV-FTETTV 116
           + S+ +  F   +    +SL PS+G++FCRYMS+TVGEG+D KIELISDVADV  T+ + 
Sbjct: 54  SGSFDIRPFQEIRFRDAYSLSPSIGASFCRYMSSTVGEGSDHKIELISDVADVVLTDASA 113

Query: 117 QAIANQ--APAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATV 174
           Q++A    AP VNEVA AAAD F PVA LQH IDA+HN TGFNWWASI++TTL+IRT  V
Sbjct: 114 QSVATNVTAPVVNEVAAAAADCFAPVAVLQHVIDAVHNLTGFNWWASIVLTTLIIRTMMV 173

Query: 175 PLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLK 234
           PL+INQLK+TSKLTLMRPRLEEIKQ M + AMDP A+A+G KRM+ LFKEYG  P TP+K
Sbjct: 174 PLMINQLKATSKLTLMRPRLEEIKQQMDNTAMDPAAIAEGNKRMKMLFKEYGASPFTPMK 233

Query: 235 GLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVEC 294
           G+F+QGPVF+ FFLAI NMAEKVPSFKNGGAFWF DLSTPDS YI P+LT L+F ITVE 
Sbjct: 234 GIFVQGPVFVCFFLAIRNMAEKVPSFKNGGAFWFVDLSTPDSLYIFPVLTALTFWITVEL 293

Query: 295 NMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYG 346
           NMQEGLEGNP A TMKNISR FA L++PLTM FPKAIFCYW+T+N FS  YG
Sbjct: 294 NMQEGLEGNPVAGTMKNISRVFAALTVPLTMGFPKAIFCYWVTTNLFSFAYG 345

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797165|ref|XP_002866467.1| hypothetical protein ARALYDRAFT_496379 [Arabidopsis lyrata subsp. lyrata] gi|297312302|gb|EFH42726.1| hypothetical protein ARALYDRAFT_496379 [Arabidopsis lyrata subsp. lyrata]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/348 (59%), Positives = 269/348 (77%), Gaps = 8/348 (2%)

Query: 1   MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNN 60
           MA+RR+L  R+TL AR   PS++ I   +DH++ S  +  S+ + HSF+  RS  NS  +
Sbjct: 1   MAFRRTLAIRSTLFARRSQPSYHIIPLANDHERDSFSQETSQRSYHSFLHQRSVNNSDFS 60

Query: 61  SYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAI- 119
               G  +         + P    AF RYMST  G G++KI ++SD+A+V T++T+Q + 
Sbjct: 61  KVSGGGLY-------LPMAPMSAFAFYRYMSTAPGVGSEKIGVMSDIAEVITDSTLQDVP 113

Query: 120 ANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLIN 179
           A  A AV+EV +AAADSF P+AALQH ID +H+FTGF WWASI+V T+LIR++TVPLLI 
Sbjct: 114 AQAAAAVSEVTLAAADSFFPIAALQHCIDMVHSFTGFGWWASIVVATILIRSSTVPLLIK 173

Query: 180 QLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQ 239
           Q+K T+KL LMRPRLE I+++MQ+K MD + +A+GQK+M+NLFKEYGV P TP+KG+FIQ
Sbjct: 174 QMKDTTKLALMRPRLESIREEMQNKGMDSVTMAEGQKKMKNLFKEYGVTPFTPMKGMFIQ 233

Query: 240 GPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEG 299
           GP+FI FFLAI NMAEKVPSF+ GGA WFTDL+TPDS YILP++TGL+FLITVECN QEG
Sbjct: 234 GPLFICFFLAIRNMAEKVPSFQTGGALWFTDLTTPDSLYILPVITGLTFLITVECNAQEG 293

Query: 300 LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGL 347
           +EGNP A T+KN+ RGFA+L++P+TM+FP+AIFCYWITSN FSL+YGL
Sbjct: 294 MEGNPMAGTVKNVCRGFALLTVPMTMSFPQAIFCYWITSNLFSLMYGL 341

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579269|ref|XP_002530480.1| cytochrome oxidase biogenesis protein, putative [Ricinus communis] gi|223529977|gb|EEF31903.1| cytochrome oxidase biogenesis protein, putative [Ricinus communis]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/354 (64%), Positives = 267/354 (75%), Gaps = 15/354 (4%)

Query: 1   MAYRRSLTTRATLIARAYNPSFNYIIY--DH--DHKQ--KSPDETLSRTNIHSFIQSRSF 54
           MAY RSLTTR+TL+ + Y P+F + ++  DH  DHKQ   S DE        S++Q R F
Sbjct: 1   MAYIRSLTTRSTLLKQQYRPAFTFSLHHQDHYDDHKQHNNSIDE-------FSYVQERGF 53

Query: 55  GNSLNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTT-VGEGAD-KIELISDVADVFT 112
            +  + S+ + +F   +    +SL PS+G++FCRYMSTT VGEG+D KIEL+SDVADV  
Sbjct: 54  RSKSSGSFNIKSFQEIRLRDAYSLSPSIGASFCRYMSTTTVGEGSDHKIELMSDVADVVI 113

Query: 113 ETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTA 172
             T       A AVNEVA AAAD F PVA L H IDA+HN TGFNWWASI++TTL+IRT 
Sbjct: 114 TDTSAQSVAAASAVNEVAAAAADCFPPVAVLHHIIDAVHNLTGFNWWASIVLTTLVIRTL 173

Query: 173 TVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTP 232
            VPL+INQLK+TSKLTLMRPRLEEIKQ MQD  MDP  +A+G K+M+ LFKEYGV P TP
Sbjct: 174 MVPLMINQLKATSKLTLMRPRLEEIKQQMQDTGMDPATIAEGNKQMKMLFKEYGVSPFTP 233

Query: 233 LKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITV 292
           +KGLFIQGPVF+ FFLAI NMAE VPSFKNGGAFWF DLSTPDS YI P+LT L+F IT+
Sbjct: 234 MKGLFIQGPVFVCFFLAIRNMAENVPSFKNGGAFWFVDLSTPDSLYIFPVLTALTFWITI 293

Query: 293 ECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYG 346
           E NMQEGLEGNP A TMKNISR FA L++PLTM FPKAIFCYW+T+N FS  YG
Sbjct: 294 ELNMQEGLEGNPVAGTMKNISRVFAALTVPLTMGFPKAIFCYWVTTNLFSFAYG 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474092|ref|XP_002270313.2| PREDICTED: mitochondrial inner membrane protein OXA1-like [Vitis vinifera]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/347 (60%), Positives = 252/347 (72%), Gaps = 8/347 (2%)

Query: 1   MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNN 60
           MAYRRS+ TR   +AR  +PSF YI +D D KQ+S D   S   I  F+  RSFG+ +N 
Sbjct: 1   MAYRRSVITRGGFLARRIHPSFGYISHDEDRKQRSADSYQSPQRISDFLLRRSFGSKINT 60

Query: 61  SYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIA 120
           S G G FF G+  S  S   +VGS++ RYMST +GEG++ I +I+       ET V  IA
Sbjct: 61  SGGFGAFFQGKGFSPLSHQVAVGSSYSRYMSTAIGEGSENIGVIA-------ETPVDLIA 113

Query: 121 NQAPAV-NEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLIN 179
           N    V +EV+IAAADSF  V  LQH I  +H++TG +W ASI +TTLLIR  TVPLL+N
Sbjct: 114 NATVDVASEVSIAAADSFFLVGILQHLIGGVHSYTGLSWAASIALTTLLIRGMTVPLLVN 173

Query: 180 QLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQ 239
           QLKSTSKLTLMRP LE I+++MQ K M+P AVA+G KRMQ +FKEYGV P TPLKGL IQ
Sbjct: 174 QLKSTSKLTLMRPHLEAIREEMQAKGMEPSAVAEGNKRMQQIFKEYGVTPFTPLKGLIIQ 233

Query: 240 GPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEG 299
           GPVF+SFFL ISNM +KVPSFK GGA WFTDL+TPDSFYI+PIL GL+FLITVE NMQ+G
Sbjct: 234 GPVFVSFFLGISNMVQKVPSFKTGGALWFTDLTTPDSFYIMPILAGLTFLITVEFNMQDG 293

Query: 300 LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYG 346
           ++GNP A TMK  SR  A LS+P TM F + IFCYWI SN FSL YG
Sbjct: 294 MQGNPTAGTMKKFSRALAFLSVPFTMNFAQGIFCYWIPSNLFSLAYG 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742331|emb|CBI34480.3| unnamed protein product [Vitis vinifera]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/347 (60%), Positives = 252/347 (72%), Gaps = 8/347 (2%)

Query: 1   MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNN 60
           MAYRRS+ TR   +AR  +PSF YI +D D KQ+S D   S   I  F+  RSFG+ +N 
Sbjct: 1   MAYRRSVITRGGFLARRIHPSFGYISHDEDRKQRSADSYQSPQRISDFLLRRSFGSKINT 60

Query: 61  SYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIA 120
           S G G FF G+  S  S   +VGS++ RYMST +GEG++ I +I+       ET V  IA
Sbjct: 61  SGGFGAFFQGKGFSPLSHQVAVGSSYSRYMSTAIGEGSENIGVIA-------ETPVDLIA 113

Query: 121 NQAPAV-NEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLIN 179
           N    V +EV+IAAADSF  V  LQH I  +H++TG +W ASI +TTLLIR  TVPLL+N
Sbjct: 114 NATVDVASEVSIAAADSFFLVGILQHLIGGVHSYTGLSWAASIALTTLLIRGMTVPLLVN 173

Query: 180 QLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQ 239
           QLKSTSKLTLMRP LE I+++MQ K M+P AVA+G KRMQ +FKEYGV P TPLKGL IQ
Sbjct: 174 QLKSTSKLTLMRPHLEAIREEMQAKGMEPSAVAEGNKRMQQIFKEYGVTPFTPLKGLIIQ 233

Query: 240 GPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEG 299
           GPVF+SFFL ISNM +KVPSFK GGA WFTDL+TPDSFYI+PIL GL+FLITVE NMQ+G
Sbjct: 234 GPVFVSFFLGISNMVQKVPSFKTGGALWFTDLTTPDSFYIMPILAGLTFLITVEFNMQDG 293

Query: 300 LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYG 346
           ++GNP A TMK  SR  A LS+P TM F + IFCYWI SN FSL YG
Sbjct: 294 MQGNPTAGTMKKFSRALAFLSVPFTMNFAQGIFCYWIPSNLFSLAYG 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:2174068	429	OXA1 "homolog of yeast oxidase	0.963	0.792	0.545	1.3e-100
TAIR|locus:2039134	431	OXA1L "AT2G46470" [Arabidopsis	0.943	0.772	0.504	7.2e-84
POMBASE|SPBP4H10.03	409	oxa102 "mitochondrial inner me	0.592	0.511	0.365	2.3e-32
ZFIN|ZDB-GENE-071004-49	469	oxa1l "oxidase (cytochrome c)	0.575	0.432	0.339	3.3e-31
FB|FBgn0027615	441	CG6404 [Drosophila melanogaste	0.580	0.464	0.331	1.4e-30
UNIPROTKB|E7EVY0	408	OXA1L "Mitochondrial inner mem	0.665	0.575	0.295	2.1e-29
UNIPROTKB|Q15070	435	OXA1L "Mitochondrial inner mem	0.665	0.540	0.295	2.1e-29
UNIPROTKB|J3KNA0	495	OXA1L "Mitochondrial inner mem	0.665	0.474	0.295	3.3e-29
MGI|MGI:1916339	433	Oxa1l "oxidase assembly 1-like	0.586	0.478	0.312	9.1e-29
UNIPROTKB|F1PYA2	435	OXA1L "Uncharacterized protein	0.662	0.537	0.300	3.1e-28

TAIR|locus:2174068 OXA1 "homolog of yeast oxidase assembly 1 (OXA1)" [Arabidopsis thaliana (taxid:3702)]

 Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
 Identities = 190/348 (54%), Positives = 251/348 (72%)

Query:     1 MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRXXXXXXXX 60
             MA+R++L+ R+ L AR   P ++ I  + DH++ S  +  S+ + HSF+  R        
Sbjct:     1 MAFRQTLSIRSRLFARRNQPVYHIIPRESDHERDSFCQETSQRSYHSFLHQRSVNNSDFS 60

Query:    61 XXXXXXXFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIA 120
                     H        L P+ G AF RYMS+  G G++KI ++SD+A+V T++T+Q + 
Sbjct:    61 KVSGGS-LH------LPLAPTSGFAFYRYMSSAPGVGSEKIGVMSDIAEVITDSTLQDVP 113

Query:   121 NQXXXXXXXXX-XXXDSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLIN 179
              Q             DSF P+AALQ  ID +H FTGF WWASI+V T+LIR++TVPLLI 
Sbjct:   114 AQAAAAVSEVTLAAADSFFPIAALQQCIDMVHTFTGFEWWASIVVATILIRSSTVPLLIK 173

Query:   180 QLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQ 239
             Q+K T+KL LMRPRLE I+++MQ+K MD + +A+GQK+M+NLFKEYGV P TP+KG+FIQ
Sbjct:   174 QMKDTTKLALMRPRLESIREEMQNKGMDSVTMAEGQKKMKNLFKEYGVTPFTPMKGMFIQ 233

Query:   240 GPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEG 299
             GP+FI FFLAI NMAEKVPSF+ GGA WFTDL+TPDS YILP++TGL+FLITVECN QEG
Sbjct:   234 GPLFICFFLAIRNMAEKVPSFQTGGALWFTDLTTPDSLYILPVITGLTFLITVECNAQEG 293

Query:   300 LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGL 347
             +EGNP A T+K + R FA+L++P+TM+FP+AIFCYWITSN FSL+YGL
Sbjct:   294 MEGNPMAGTVKTVCRVFALLTVPMTMSFPQAIFCYWITSNLFSLMYGL 341

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0006461 "protein complex assembly" evidence=IMP

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IGI

TAIR|locus:2039134 OXA1L "AT2G46470" [Arabidopsis thaliana (taxid:3702)]

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 176/349 (50%), Positives = 225/349 (64%)

Query:     5 RSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRXXXXXXXXXXXX 64
             R +T R  L+ R   PS  ++I D   + KS     S T I   +               
Sbjct:     6 RGITKRVNLLQRRVYPSCGHLIRDDRDETKSGS---SDTMIREVLARNGTNKLSSM---- 58

Query:    65 XXXFHGQRVSQFSLVP-SVGSAFCRYMSTTVGEGADKIELISDVA-DVFTETTVQAIANQ 122
                F  +    F+  P  +G + CR+MS+T  E +DK++ I  VA +V  +  ++A+   
Sbjct:    59 ---FADRHYQSFATGPLGLGLSSCRHMSSTPPEWSDKVDGIDFVATEVVPDEIIEAVTTT 115

Query:   123 XXXXXXX----XXXXXDSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLI 178
                             DS  PVAALQH IDA+H+FTG NWWASI +TT+LIR  T+P+L+
Sbjct:   116 SQAVVPAINEVAIAAADSAFPVAALQHLIDAVHSFTGLNWWASIALTTVLIRGVTIPILL 175

Query:   179 NQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFI 238
             NQLK+T KL ++RP+LEE++Q+M  KA DP A+A+GQ+RMQ LFKE+GV P TPLKGL I
Sbjct:   176 NQLKATYKLNVLRPQLEELRQEMSTKAQDPEAMAEGQRRMQLLFKEHGVTPFTPLKGLII 235

Query:   239 QGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQE 298
             QGP+FISFF AI NMAEKVPSFK GG  WFTDL+T D+ YILP+LT ++FLI VE NMQE
Sbjct:   236 QGPIFISFFFAIRNMAEKVPSFKTGGTLWFTDLTTTDTTYILPLLTAVTFLIMVESNMQE 295

Query:   299 GLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGL 347
             GLEGNP A TMK  SR  A LSIP+ +   KA+FCYW+TSN F+LVYGL
Sbjct:   296 GLEGNPVAGTMKKFSRIIAFLSIPVLIGIEKALFCYWLTSNLFTLVYGL 344

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=TAS

GO:0016020 "membrane" evidence=IDA

POMBASE|SPBP4H10.03 oxa102 "mitochondrial inner membrane translocase Oxa102" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 79/216 (36%), Positives = 118/216 (54%)

Query:   136 SFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLE 195
             SFLP   LQ+ ++ +H ++G  WWASI    + +R A  P+++  +K+++KL ++ P++ 
Sbjct:    93 SFLPHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFPIMLKMMKTSAKLAIINPKVA 152

Query:   196 EIKQDMQDKAM---DPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISN 252
             E    +  KA    +   +     ++QNL+K   V+PL  L     QG +FISFF A+  
Sbjct:   153 E-HMSVLSKAKAEGNSELMMQATTQIQNLYKVNNVNPLNLLSAPVFQGILFISFFYALKT 211

Query:   253 MAE-KVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKN 311
             MA   V  F +GG +W  DLS PD  +I P+  GL  L+ +E   + G      + +MK 
Sbjct:   212 MAGVPVEGFTDGGFWWVNDLSQPDPLHIFPVANGLLMLLNIELGSETGSNKVAMSPSMKK 271

Query:   312 ISRGFAVLSIPL-TMTFPKAIFCYWITSNFFSLVYG 346
               R F  L+ PL TM FP AIF YW  SN FS+  G
Sbjct:   272 FFR-FLCLASPLFTMNFPMAIFMYWFPSNVFSVFQG 306

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IMP

GO:0008535 "respiratory chain complex IV assembly" evidence=IMP

GO:0008565 "protein transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISS

GO:0051205 "protein insertion into membrane" evidence=IEA

ZFIN|ZDB-GENE-071004-49 oxa1l "oxidase (cytochrome c) assembly 1-like" [Danio rerio (taxid:7955)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 71/209 (33%), Positives = 116/209 (55%)

Query:   139 PVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIK 198
             PV  +Q+ ++ MH   G  WW +I+  T++ R A  P+++   +  +KL  + P + ++ 
Sbjct:   156 PVGLIQNLLEFMHVSIGLPWWGAIVAGTIVARCAVFPVIVKGQREAAKLNNVMPEMTKLT 215

Query:   199 QDMQD--KAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAE- 255
               M +  ++ +    +     +    K+  V+P        +Q P+F+SFF+A+  M+E 
Sbjct:   216 NRMNEAKQSGNKFEFSKAYTDLMMFQKKKDVNPFRGFLVPLVQAPIFLSFFIALRKMSEL 275

Query:   256 KVPSFKNGGAFWFTDLSTPDSFYILPI-LTGLSFLITVECNMQEGLEGNPAAVTMKNISR 314
              VPS + GG +WFTDL+  D FYILPI +TG    I +E   + G++ NP    MK + R
Sbjct:   276 PVPSLQTGGLWWFTDLTAADPFYILPIAVTGTMVAI-LELGAESGVD-NPNLRAMKTVFR 333

Query:   315 GFAVLSIPLTMTFPKAIFCYWITSNFFSL 343
                 + +PLT+ FP A+F YW+TSN FSL
Sbjct:   334 IMPFVILPLTINFPTAVFTYWMTSNLFSL 362

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0027615 CG6404 [Drosophila melanogaster (taxid:7227)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 69/208 (33%), Positives = 110/208 (52%)

Query:   139 PVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIK 198
             PV  +Q+ ++ +H      WW +I + TL +RT   PL+I   ++++K+    P+++ ++
Sbjct:   133 PVGMVQNCLEFLHCTWDIPWWGTIAIGTLAVRTIIFPLVILAQRNSAKMNNNMPQMQMLQ 192

Query:   199 QDMQDKAMDPMAVADGQ--KRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEK 256
               M +      A+   +  + M    +E GV+PL  +     Q P+FISFF+ +  MA  
Sbjct:   193 LKMTEARQSGNAIESARYAQEMMLFMREKGVNPLKNMVVPLAQAPLFISFFMGLRQMANA 252

Query:   257 -VPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRG 315
              V S ++GG FWFTDL+  D FY+LP++T  +  +T+E              TMK + R 
Sbjct:   253 PVESMRDGGLFWFTDLTMADPFYLLPLITSATLYLTIEIGTDSARLSAANMNTMKYVLRA 312

Query:   316 FAVLSIPLTMTFPKAIFCYWITSNFFSL 343
               ++  P TM FP AI  YW  SNF SL
Sbjct:   313 LPIVIFPFTMNFPAAILTYWACSNFISL 340

GO:0008535 "respiratory chain complex IV assembly" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005740 "mitochondrial envelope" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

UNIPROTKB|E7EVY0 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 72/244 (29%), Positives = 121/244 (49%)

Query:   104 ISDVADVFTETTVQAIANQXXXXXXXXXXXXDSFLPVAALQHFIDAMHNFTGFNWWASII 163
             + +VA   T   VQ  A Q             S+ PV  +Q+ ++ MH   G  WW +I 
Sbjct:    91 VPEVASGETADVVQTAAEQSFAELGLG-----SYTPVGLIQNLLEFMHVDLGLPWWGAIA 145

Query:   164 VTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAM--DPMAVADGQKRMQNL 221
               T+  R    PL++   +  +++    P +++    +++  +  D +        M   
Sbjct:   146 ACTVFARCLIFPLIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALY 205

Query:   222 FKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAE-KVPSFKNGGAFWFTDLSTPDSFYIL 280
              K++G+    PL     Q P+FISFF+A+  MA   VPS + GG +WF DL+  D  YIL
Sbjct:   206 QKKHGIKLYKPLILPVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPIYIL 265

Query:   281 PILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNF 340
             P+    +    +E   + G++ +     M+N+ R   ++++P+TM FP A+F YW++SN 
Sbjct:   266 PLAVTATMWAVLELGAETGVQSSDLQ-WMRNVIRMMPLITLPITMHFPTAVFMYWLSSNL 324

Query:   341 FSLV 344
             FSLV
Sbjct:   325 FSLV 328

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q15070 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 72/244 (29%), Positives = 121/244 (49%)

Query:   104 ISDVADVFTETTVQAIANQXXXXXXXXXXXXDSFLPVAALQHFIDAMHNFTGFNWWASII 163
             + +VA   T   VQ  A Q             S+ PV  +Q+ ++ MH   G  WW +I 
Sbjct:    91 VPEVASGETADVVQTAAEQSFAELGLG-----SYTPVGLIQNLLEFMHVDLGLPWWGAIA 145

Query:   164 VTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAM--DPMAVADGQKRMQNL 221
               T+  R    PL++   +  +++    P +++    +++  +  D +        M   
Sbjct:   146 ACTVFARCLIFPLIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALY 205

Query:   222 FKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAE-KVPSFKNGGAFWFTDLSTPDSFYIL 280
              K++G+    PL     Q P+FISFF+A+  MA   VPS + GG +WF DL+  D  YIL
Sbjct:   206 QKKHGIKLYKPLILPVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPIYIL 265

Query:   281 PILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNF 340
             P+    +    +E   + G++ +     M+N+ R   ++++P+TM FP A+F YW++SN 
Sbjct:   266 PLAVTATMWAVLELGAETGVQSSDLQ-WMRNVIRMMPLITLPITMHFPTAVFMYWLSSNL 324

Query:   341 FSLV 344
             FSLV
Sbjct:   325 FSLV 328

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0032592 "integral to mitochondrial membrane" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0033615 "mitochondrial proton-transporting ATP synthase complex assembly" evidence=IMP

GO:0032780 "negative regulation of ATPase activity" evidence=IMP

GO:0051354 "negative regulation of oxidoreductase activity" evidence=IMP

GO:0009060 "aerobic respiration" evidence=NAS;IMP

GO:0005746 "mitochondrial respiratory chain" evidence=NAS

GO:0055114 "oxidation-reduction process" evidence=NAS

GO:0006461 "protein complex assembly" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0051262 "protein tetramerization" evidence=IDA

GO:0097177 "mitochondrial ribosome binding" evidence=IDA

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0097031 "mitochondrial respiratory chain complex I biogenesis" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|J3KNA0 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)]

 Score = 326 (119.8 bits), Expect = 3.3e-29, P = 3.3e-29
 Identities = 72/244 (29%), Positives = 121/244 (49%)

Query:   104 ISDVADVFTETTVQAIANQXXXXXXXXXXXXDSFLPVAALQHFIDAMHNFTGFNWWASII 163
             + +VA   T   VQ  A Q             S+ PV  +Q+ ++ MH   G  WW +I 
Sbjct:   151 VPEVASGETADVVQTAAEQSFAELGLG-----SYTPVGLIQNLLEFMHVDLGLPWWGAIA 205

Query:   164 VTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAM--DPMAVADGQKRMQNL 221
               T+  R    PL++   +  +++    P +++    +++  +  D +        M   
Sbjct:   206 ACTVFARCLIFPLIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALY 265

Query:   222 FKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAE-KVPSFKNGGAFWFTDLSTPDSFYIL 280
              K++G+    PL     Q P+FISFF+A+  MA   VPS + GG +WF DL+  D  YIL
Sbjct:   266 QKKHGIKLYKPLILPVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPIYIL 325

Query:   281 PILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNF 340
             P+    +    +E   + G++ +     M+N+ R   ++++P+TM FP A+F YW++SN 
Sbjct:   326 PLAVTATMWAVLELGAETGVQSSDLQ-WMRNVIRMMPLITLPITMHFPTAVFMYWLSSNL 384

Query:   341 FSLV 344
             FSLV
Sbjct:   385 FSLV 388

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

MGI|MGI:1916339 Oxa1l "oxidase assembly 1-like" [Mus musculus (taxid:10090)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 66/211 (31%), Positives = 111/211 (52%)

Query:   136 SFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLE 195
             S+ PV  +Q+ ++ +H   G  WW +I   T+L R    PL++   +  +K+    P ++
Sbjct:   113 SYTPVGLIQNLLEYIHVDLGLPWWGAIATCTVLARCLVFPLIVKGQREAAKIHNHMPEMQ 172

Query:   196 EIKQDMQDKAM--DPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNM 253
             +    +++  +  D          M    K++ +  L PL     Q PVFISFF+A+  M
Sbjct:   173 KFSARIREAKLAGDQAEFYKATIEMTRYQKKHDIKLLRPLILPLTQAPVFISFFIALREM 232

Query:   254 AE-KVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNI 312
             A   VPS + GG +WF DL+  D  Y+LP++   +    +E   + G++ N     M+NI
Sbjct:   233 ANLPVPSLQTGGLWWFQDLTVSDPIYVLPLVVTATMWCVLELGAETGVQSNDLQF-MRNI 291

Query:   313 SRGFAVLSIPLTMTFPKAIFCYWITSNFFSL 343
              R   ++ +P+T+ FP A+F YW++SN FSL
Sbjct:   292 IRVMPLVVLPVTIHFPSAVFMYWLSSNVFSL 322

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0009060 "aerobic respiration" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0032592 "integral to mitochondrial membrane" evidence=ISO

GO:0032780 "negative regulation of ATPase activity" evidence=ISO

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

GO:0033615 "mitochondrial proton-transporting ATP synthase complex assembly" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0051262 "protein tetramerization" evidence=ISO

GO:0051354 "negative regulation of oxidoreductase activity" evidence=ISO

GO:0097031 "mitochondrial respiratory chain complex I biogenesis" evidence=ISO

GO:0097177 "mitochondrial ribosome binding" evidence=ISO

UNIPROTKB|F1PYA2 OXA1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 73/243 (30%), Positives = 119/243 (48%)

Query:   104 ISDVADVFTETTVQAIANQXXXXXXXXXXXXDSFLPVAALQHFIDAMHNFTGFNWWASII 163
             +++VA   T   VQA A Q             S+ PV  +Q+ ++ MH   G  WW +I 
Sbjct:    90 VTEVASGETADVVQAAAEQSFAELGLG-----SYTPVGLIQNLLEFMHVNLGLPWWGAIA 144

Query:   164 VTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAM--DPMAVADGQKRMQNL 221
               T+L R    PL++   +  +K+    P +++    +++  +  D          M   
Sbjct:   145 ACTVLARCLVFPLIVKGQREAAKIHNHLPEIQKFSTRIREAKLAGDQAEFYKASSEMTFY 204

Query:   222 FKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAE-KVPSFKNGGAFWFTDLSTPDSFYIL 280
              K++ V    PL     Q P+FISFF+A+  MA   VPS + GG  WF DL+  D  YIL
Sbjct:   205 QKKHDVKLFRPLILPLTQAPIFISFFIALREMANLPVPSLQTGGLLWFQDLTLSDPTYIL 264

Query:   281 PILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNF 340
             P++   +    +E   + G++ +     M+N+ R   +  +P+T+ FP A+F YW++SN 
Sbjct:   265 PLVVTATMWGVLELGAETGMQSSDLQ-WMRNLIRVMPLAVLPITIHFPTAVFMYWLSSNM 323

Query:   341 FSL 343
             FSL
Sbjct:   324 FSL 326

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42191	OXA1_ARATH	No assigned EC number	0.5833	0.9631	0.7925	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I000814 inner membrane protein (459 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
pfam02096	193	pfam02096, 60KD_IMP, 60Kd inner membrane protein	4e-51
TIGR03592	181	TIGR03592, yidC_oxa1_cterm, membrane protein inser	9e-37
COG0706	314	COG0706, YidC, Preprotein translocase subunit YidC	2e-36
PRK02944	255	PRK02944, PRK02944, OxaA-like protein precursor; V	1e-27
PRK01622	256	PRK01622, PRK01622, OxaA-like protein precursor; V	9e-25
PRK00145	223	PRK00145, PRK00145, putative inner membrane protei	2e-22
PRK01318	521	PRK01318, PRK01318, membrane protein insertase; Pr	6e-16
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	6e-12
PRK01315	329	PRK01315, PRK01315, putative inner membrane protei	2e-11
PRK01001	795	PRK01001, PRK01001, putative inner membrane protei	1e-07
PRK02201	357	PRK02201, PRK02201, putative inner membrane protei	2e-07
PRK02463	307	PRK02463, PRK02463, OxaA-like protein precursor; P	7e-07
PRK03449	304	PRK03449, PRK03449, putative inner membrane protei	8e-07
PRK02654	375	PRK02654, PRK02654, putative inner membrane protei	1e-04

>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein

 Score =  168 bits (427), Expect = 4e-51
 Identities = 66/189 (34%), Positives = 107/189 (56%), Gaps = 8/189 (4%)

Query: 157 NWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQK 216
           NW  +II+ T+L+R   +PL + Q KS +K+  ++P ++EI++  +D   DP  +   Q+
Sbjct: 2   NWGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKEIQEKYKD---DPQKL---QQ 55

Query: 217 RMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDS 276
            M  L+KE+GV+PL     + IQ P+FI+ + A+ NMAE + S +  G  W  DLS PD 
Sbjct: 56  EMMKLYKEHGVNPLAGCLPMLIQLPIFIALYRALRNMAE-LRSLETAGFLWIKDLSAPDP 114

Query: 277 -FYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYW 335
            ++ILPIL GL+  +  + +  +       +  MK +     ++ +   + FP  +  YW
Sbjct: 115 PYFILPILAGLTMFLQQKLSPSQDPPDLQQSAQMKIMMYIMPLIFLFFFLNFPAGLVLYW 174

Query: 336 ITSNFFSLV 344
           I SN FSLV
Sbjct: 175 IVSNLFSLV 183

Length = 193

>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain

 Score =  130 bits (330), Expect = 9e-37
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 14/188 (7%)

Query: 157 NWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQK 216
           NW  +II+ T+++R   +PL + Q KS  K+  ++P+L+EI++  +D   DP  +   Q+
Sbjct: 1   NWGLAIILLTIIVRLILLPLTLKQYKSMRKMQELQPKLKEIQEKYKD---DPQKL---QQ 54

Query: 217 RMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDS 276
            M  L+KE GV+PL     L IQ P+FI+ +  +    E     ++    W  DLS PD 
Sbjct: 55  EMMKLYKEEGVNPLGGCLPLLIQMPIFIALYQVLRRSIE----LRHAPFLWIQDLSAPDP 110

Query: 277 FYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWI 336
           +YILPIL G++  +  + +      G P     K +     V+ +   ++FP  +  YW+
Sbjct: 111 YYILPILMGVTMFLQQKLSPS----GPPDPAQQKIMMYIMPVMFLFFFLSFPAGLVLYWV 166

Query: 337 TSNFFSLV 344
            SN F+++
Sbjct: 167 VSNLFTII 174

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here [Protein fate, Protein and peptide secretion and trafficking]. Length = 181

>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

 Score =  133 bits (337), Expect = 2e-36
 Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 14/202 (6%)

Query: 146 FIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKA 205
            +  + +F+G NW  SII+ T+++R    PL     +S +K+  ++P+++EI++  + K 
Sbjct: 98  LLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQE--KYKG 155

Query: 206 MDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAE-KVPSFKNGG 264
            D       Q+ M  L+K++ V+PL     L IQ P+FI+ +  + +  E +   F    
Sbjct: 156 TDKQK---QQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVELRGAPF---- 208

Query: 265 AFWFTDLSTPDSFYIL--PILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIP 322
             W TDLS PD  YIL  PIL G++  +  + + +      P     K +     ++   
Sbjct: 209 LGWITDLSLPDPDYILLLPILAGVTMFLQQKLSPRNL--STPQDPQQKKMMYIMPIIFTF 266

Query: 323 LTMTFPKAIFCYWITSNFFSLV 344
               FP  +  YWI SN FS++
Sbjct: 267 FFFNFPAGLVLYWIVSNLFSIL 288

Length = 314

>gnl|CDD|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated

 Score =  108 bits (272), Expect = 1e-27
 Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 10/205 (4%)

Query: 140 VAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQ 199
           V  L   I    N  G N+  +IIV TLLIR   +PL+I Q KST  +  ++P ++++K+
Sbjct: 41  VYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKE 100

Query: 200 DMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPS 259
               K  D       Q+ M  LF++ GV+PL     +FIQ P+ I+F+ AI   +E    
Sbjct: 101 KYSSK--DQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE---- 154

Query: 260 FKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVL 319
                  WF DL   D +YILPI+ G++  I  +  M      NP    M  +     ++
Sbjct: 155 ISKHSFLWF-DLGQADPYYILPIVAGITTFIQQKLMMAGTAGQNPQMAMMLWL---MPIM 210

Query: 320 SIPLTMTFPKAIFCYWITSNFFSLV 344
            +   + FP A+  YW+  N F + 
Sbjct: 211 ILIFAINFPAALSLYWVVGNIFMIA 235

Length = 255

>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated

 Score =  100 bits (252), Expect = 9e-25
 Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 32/213 (15%)

Query: 146 FIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKST----SKLTLMRPRLEEIKQDM 201
            I  + +  G ++  +II+ TL+IR+  +PL ++Q KS      K+ +M+P L++I+  +
Sbjct: 48  LIQFVAHHIGGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKL 107

Query: 202 QDKAMDPMAVADGQKRMQNLFKEYGVHPLT----PLKGLFIQGPVFISFFLAISNMAE-K 256
                D     + QK M  L+K   ++PL     P   L IQ P+  +F+ AI    E  
Sbjct: 108 -KVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLP---LLIQMPILSAFYYAIRRTEEIA 163

Query: 257 VPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGF 316
             SF      WF +L   D  +ILPI+ GL++ I ++ +   G   +P  V M  I    
Sbjct: 164 SHSF-----LWF-NLGHAD--HILPIIAGLTYFIQMKVSQSNG--TSPEQVQMLKI---- 209

Query: 317 AVLSIPLTMTF-----PKAIFCYWITSNFFSLV 344
             + +P  + F     P A+  YWIT   F + 
Sbjct: 210 QGIMMPAMILFMSFAAPSALVLYWITGGLFLMG 242

Length = 256

>gnl|CDD|234665 PRK00145, PRK00145, putative inner membrane protein translocase component YidC; Provisional

 Score = 93.7 bits (233), Expect = 2e-22
 Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 32/216 (14%)

Query: 142 ALQHFIDAMHNFT-------GFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRL 194
           A   F   +H F         F++  +II+ TL+IR   +PL I Q KS+ ++  ++P +
Sbjct: 8   AFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEI 67

Query: 195 EEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMA 254
           ++++   ++   DP  +   Q+ M  L+KE GV+PL     L IQ P+ I+ +   +N+ 
Sbjct: 68  KKLQAKYKN---DPQKL---QQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLT 121

Query: 255 EKVPSFKNGGAF-WFTDLSTPDSFYILPILTGL-----SFLITVECNMQEGLEGNPAAVT 308
                  NG +F W  DL+ PD  +ILPIL+G       +L+T   + Q G         
Sbjct: 122 G-----INGVSFLWIKDLAKPDITWILPILSGATTYLSGYLMTKADSSQAG--------Q 168

Query: 309 MKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLV 344
           MK ++ G ++    ++  F  A+  YW+  N   ++
Sbjct: 169 MKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQII 204

Length = 223

>gnl|CDD|234942 PRK01318, PRK01318, membrane protein insertase; Provisional

 Score = 78.4 bits (194), Expect = 6e-16
 Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 49/219 (22%)

Query: 143 LQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQ 202
           L       H+F G NW  +II+ T++++    PL      S +K+ +++P+++E+K+  +
Sbjct: 313 LDFL----HSFVG-NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYK 367

Query: 203 DKAMDPMAVADGQKRMQNLFKEYGVHPLT---PLKGLFIQGPVFISFFLAISNMAE-KVP 258
           D   DP  +   Q+ M  L+K+  V+PL    P+    IQ P+F + +  +    E +  
Sbjct: 368 D---DPQKM---QQEMMELYKKEKVNPLGGCLPI---LIQIPIFFALYKVLLVSIELRHA 418

Query: 259 SFKNGGAFWFTDLSTPDSFYIL-----PILTGLSFLITVECNMQEGLEGNPAAVTMKNIS 313
            F      W  DLS PD ++IL     PIL G++  +  + N        P       I 
Sbjct: 419 PF----IGWIHDLSAPDPYFILHIGLLPILMGITMFLQQKLNP------TPTDPMQAKI- 467

Query: 314 RGFAVLSIPLTMTFPKAIF--------CYWITSNFFSLV 344
                +  PL  TF    F         YWI +N  +++
Sbjct: 468 --MKFM--PLIFTF---FFLSFPAGLVLYWIVNNLLTII 499

Length = 521

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 56/257 (21%)

Query: 140 VAALQHFIDAMHNFTGFN----WWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLE 195
           V  L H +  +HN  G +    W+AS+    + +R    P    Q KS      +RP+ +
Sbjct: 12  VMKLWHLL--LHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRK 69

Query: 196 EIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMA- 254
            ++++ + K  D  ++ + Q++ ++L KEYG +PL       IQ PVF+  +  +  MA 
Sbjct: 70  ALREEYKGKT-DEASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMAR 128

Query: 255 ------------------EKVPSFKNGGAFWF-----------------TDLSTPDSFYI 279
                             E+V SF  G  F                   T  +T  +F +
Sbjct: 129 PEGGLENPVHQPIGFLTSEEVESFLQGRVFNVPLPAYVSMPAEQLAYLGTTQATVLAF-V 187

Query: 280 LP------ILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAV------LSIPLTMTF 327
           LP      + T ++  ++   + Q     +  AV M       A+      LS+ LT  F
Sbjct: 188 LPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLSLGLTGPF 247

Query: 328 PKAIFCYWITSNFFSLV 344
           P AI  YW+ +N ++L+
Sbjct: 248 PTAIALYWVANNLWTLI 264

Length = 429

>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 39/221 (17%)

Query: 154 TGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVAD 213
           +G  W  SI+   ++IR   +PL + Q+KS   +  ++P++++I++  +           
Sbjct: 38  SGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRE-----RM 92

Query: 214 GQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVP-----------SFKN 262
            Q+ M  L+KE G +PL+    L +Q P+F + +  + + A +             SF++
Sbjct: 93  SQEMM-KLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRH 151

Query: 263 G--------GAFWFTDLSTPDSF-------YILPILTGLSFLIT----VECNMQEGLEGN 303
                      F     +             +L IL   S  IT    +  NM    +  
Sbjct: 152 AHIFGAPLAATFL---QALNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTG 208

Query: 304 PAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLV 344
           P A   K +   F ++ +   + FP  +  YW+TSN +++ 
Sbjct: 209 PMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYWLTSNVWTMG 249

Length = 329

>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase component YidC; Provisional

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 24/163 (14%)

Query: 139 PVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIK 198
           P AAL   I     F   +W  SII+ T+ ++    PL    ++S  ++  + P ++EI+
Sbjct: 557 PFAALLFIIMKFFKFLTGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQ 616

Query: 199 QDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFF-LAISNMAEKV 257
           Q  +    +P      Q  +  L+K   V+P+T    L IQ P  I+ F L  S+   + 
Sbjct: 617 QKYKK---EP---KRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFLLRG 670

Query: 258 PSFKNGGAFWFTDLSTPD--------------SFYILPILTGL 286
            SF  G   W  +L+ PD               F++LPIL G+
Sbjct: 671 ASFIPG---WIDNLTAPDVLFSWETPIWFIGNEFHLLPILLGV 710

Length = 795

>gnl|CDD|235012 PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 154 TGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVAD 213
            G++   +IIV  L+IR  +  +      +  K   ++ +  +I    +D   D      
Sbjct: 129 YGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQR 188

Query: 214 GQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFT-DLS 272
            Q+ +Q L+K++ + P +P   +F+  P+FI+ +  + ++    PS K     W   DLS
Sbjct: 189 KQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSL----PSIKV--TTWLGIDLS 242

Query: 273 T 273
            
Sbjct: 243 A 243

Length = 357

>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 16/211 (7%)

Query: 140 VAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTS----KLTLMRPRLE 195
            A + +FID   N  G  +  +II+ T+++R   +PL + Q    +    K+  ++P  E
Sbjct: 42  GAPMSYFIDYFANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFE 101

Query: 196 EIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGL--FIQGPVFISFFLAISNM 253
            I + +++       +A   + M    +E G+  L  +  L   IQ P    FF A+   
Sbjct: 102 PINERLKNATTQEEKMAAQTELMAAQ-RENGISMLGGIGCLPLLIQMP----FFSALYFA 156

Query: 254 AEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNIS 313
           A+              DL +P    +L  + G+ +      +M    E       MK + 
Sbjct: 157 AQYTKGVSTSTFLGI-DLGSPS--LVLTAIIGVLYFFQSWLSMMGVPEEQREQ--MKAMM 211

Query: 314 RGFAVLSIPLTMTFPKAIFCYWITSNFFSLV 344
               ++ +  + + P  +  YW+   FFS++
Sbjct: 212 YMMPIMMVVFSFSSPAGVGLYWLVGGFFSII 242

Length = 307

>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase component YidC; Provisional

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 14/97 (14%)

Query: 155 GFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEI----KQDMQDKAMDPMA 210
           GF W  S++     +R       + Q+++T K+  ++P+++ +      D Q  A++   
Sbjct: 29  GFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKMALE--- 85

Query: 211 VADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFF 247
                  MQ L KE+G +P+     +  Q PVF+  F
Sbjct: 86  -------MQKLQKEHGFNPILGCLPMLAQIPVFLGLF 115

Length = 304

>gnl|CDD|235058 PRK02654, PRK02654, putative inner membrane protein translocase component YidC; Provisional

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 17/94 (18%)

Query: 161 SIIVTTLLIRTATVPLLINQLKSTSKLT----LMRPRLEEIKQDMQDKAMDPMAVADGQK 216
           +I+  TL+IR A  PL    +++  ++     +M+ R  EI++  ++   DP      Q+
Sbjct: 30  AIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKN---DP---QKQQE 83

Query: 217 RMQNLFKEYGVHPLTPLKG---LFIQGPVFISFF 247
            M  L KE+G     PL G   L +Q P+  + F
Sbjct: 84  EMGKLMKEFG----NPLAGCLPLLVQMPILFALF 113

Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
PRK02944	255	OxaA-like protein precursor; Validated	100.0
PRK00145	223	putative inner membrane protein translocase compon	100.0
PRK01622	256	OxaA-like protein precursor; Validated	100.0
TIGR03592	181	yidC_oxa1_cterm membrane protein insertase, YidC/O	100.0
PRK02463	307	OxaA-like protein precursor; Provisional	100.0
PRK01318	521	membrane protein insertase; Provisional	100.0
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	100.0
PRK01001	795	putative inner membrane protein translocase compon	100.0
PRK02201	357	putative inner membrane protein translocase compon	100.0
COG0706	314	YidC Preprotein translocase subunit YidC [Intracel	100.0
PRK03449	304	putative inner membrane protein translocase compon	100.0
PRK01315	329	putative inner membrane protein translocase compon	100.0
PRK00247	429	putative inner membrane protein translocase compon	100.0
KOG1239	372	consensus Inner membrane protein translocase invol	100.0
PRK02654	375	putative inner membrane protein translocase compon	100.0
COG1422	201	Predicted membrane protein [Function unknown]	97.37
PF01956	168	DUF106: Integral membrane protein DUF106; InterPro	93.66
PF01956	168	DUF106: Integral membrane protein DUF106; InterPro	80.9

>PRK02944 OxaA-like protein precursor; Validated

Probab=100.00  E-value=5.7e-52  Score=392.32  Aligned_cols=201  Identities=31%  Similarity=0.540  Sum_probs=184.8

Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 018597          140 VAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQ  219 (353)
Q Consensus       140 v~~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~  219 (353)
                      +.++.++++++|..+|.|||++|+++|+++|++++|++++|+|+++||+++|||++++|+||++  +|++++++.++|++
T Consensus        41 ~~p~~~~l~~i~~~~g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~--~~~~~~~k~~~e~~  118 (255)
T PRK02944         41 VYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSS--KDQATQQKLQQEMM  118 (255)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999985  47888888999999


Q ss_pred             HHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcchHhHHHHHHHHHHHHHHHHhhccC
Q 018597          220 NLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEG  299 (353)
Q Consensus       220 ~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pDp~~ILPil~~~~~~~~~~l~~~~~  299 (353)
                      +||||||+||+++|+|+++|+|||+++|.++|++.+    +.++||+|+ ||+.+|||+|||++++++++++.+++....
T Consensus       119 ~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~----l~~~~flW~-dLs~~Dp~~iLPil~~~~~~~~~~~~~~~~  193 (255)
T PRK02944        119 QLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE----ISKHSFLWF-DLGQADPYYILPIVAGITTFIQQKLMMAGT  193 (255)
T ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH----HhhcCCCcc-ccCcchHHHHHHHHHHHHHHHHHHhcccCC
Confidence            999999999999999999999999999999999765    678999999 999999999999999999999998865432


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597          300 LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF  350 (353)
Q Consensus       300 ~~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~  350 (353)
                      .+++   .+|+.+++++|+++++++.++|+|+.+||++||+|+++|+++..
T Consensus       194 ~~~~---~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~  241 (255)
T PRK02944        194 AGQN---PQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIK  241 (255)
T ss_pred             CCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            2223   34777889999999999999999999999999999999998754

>PRK00145 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=5.6e-50  Score=372.13  Aligned_cols=186  Identities=27%  Similarity=0.502  Sum_probs=169.9

Q ss_pred             hcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCCccc
Q 018597          153 FTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTP  232 (353)
Q Consensus       153 ~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P~~~  232 (353)
                      .+|+|||++|+++|+++|++++|++++|+|+++||+++|||++++|+||++   |+++   .++|++++|||||+||+++
T Consensus        26 ~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~---d~~~---~~~e~~~Lyk~~~inp~~~   99 (223)
T PRK00145         26 NPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKN---DPQK---LQQEMMKLYKEKGVNPLGG   99 (223)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc---cHHH---HHHHHHHHHHHhCCCchHH
Confidence            358999999999999999999999999999999999999999999999985   6654   5899999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcchHhHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 018597          233 LKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNI  312 (353)
Q Consensus       233 ~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pDp~~ILPil~~~~~~~~~~l~~~~~~~~~p~~~~mk~~  312 (353)
                      |+|+++|+|||+++|+++|++++    +.++|++|++||+.+||+++||++++++++++.+++.++.   +...+.++.+
T Consensus       100 ~lp~liQiPif~~l~~~i~~~~~----~~~~~flW~~dLt~~Dp~~iLPil~~~~~~l~~~~~~~~~---~~~~~~~k~m  172 (223)
T PRK00145        100 CLPLLIQWPILIALYYVFNNLTG----INGVSFLWIKDLAKPDITWILPILSGATTYLSGYLMTKAD---SSQAGQMKTM  172 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh----ccCCCccChhhccCcchHHHHHHHHHHHHHHHHHHcCCCC---hhHHHHHHHH
Confidence            99999999999999999999865    6789999999999999999999999999999998876542   2334567888


Q ss_pred             HHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhee
Q 018597          313 SRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEFV  351 (353)
Q Consensus       313 ~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~~  351 (353)
                      ++++|+++++++.++|+|+++||++||+|+++|+++...
T Consensus       173 ~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~~l~~  211 (223)
T PRK00145        173 NIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYFIKK  211 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999987643

>PRK01622 OxaA-like protein precursor; Validated

Probab=100.00  E-value=6.9e-49  Score=371.61  Aligned_cols=202  Identities=27%  Similarity=0.483  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHH----HHHHHhhchHHHHHHHHHhcccCCHHHHHHHH
Q 018597          140 VAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKS----TSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQ  215 (353)
Q Consensus       140 v~~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~----~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~  215 (353)
                      +.++.++++++|+..|.|||++|+++|+++|++++|++++|+|+    ++||+++|||++++|+||++++ |+++.++.+
T Consensus        42 ~~p~~~ll~~l~~~~~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~kyk~~~-d~~~~~~~~  120 (256)
T PRK01622         42 VYPFSFLIQFVAHHIGGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTK-DLEKQKEYQ  120 (256)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHHHhccC-CHHHHHHHH
Confidence            67889999999999999999999999999999999999999999    8999999999999999998754 888888899


Q ss_pred             HHHHHHHHHhCCCCcc-chhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcchHhHHHHHHHHHHHHHHHH
Q 018597          216 KRMQNLFKEYGVHPLT-PLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVEC  294 (353)
Q Consensus       216 qe~~~Lykk~gv~P~~-~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pDp~~ILPil~~~~~~~~~~l  294 (353)
                      +|++++||||||||++ +|+|+++|+|||+++|.++|++    |++.++|++|+ ||+.+|  +|||+++++++++++++
T Consensus       121 ~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~----~~l~~~~flW~-dLs~~D--~ILPil~~~~~~~~~~~  193 (256)
T PRK01622        121 KEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRT----EEIASHSFLWF-NLGHAD--HILPIIAGLTYFIQMKV  193 (256)
T ss_pred             HHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhC----hhccCCCceee-CCcchh--HHHHHHHHHHHHHHHHH
Confidence            9999999999999999 9999999999999999999986    45888999999 999999  89999999999999998


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597          295 NMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF  350 (353)
Q Consensus       295 ~~~~~~~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~  350 (353)
                      +...+. +....+.+|.+++++|+++++++.++|+|+++||++||+|+++|+++..
T Consensus       194 ~~~~~~-~~~q~~~~k~m~~~~pi~~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~  248 (256)
T PRK01622        194 SQSNGT-SPEQVQMLKIQGIMMPAMILFMSFAAPSALVLYWITGGLFLMGQTIVLR  248 (256)
T ss_pred             cCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            764322 1223345677779999999999999999999999999999999998754

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain

Probab=100.00  E-value=1.5e-48  Score=351.86  Aligned_cols=180  Identities=31%  Similarity=0.601  Sum_probs=165.2

Q ss_pred             hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCCccchhhh
Q 018597          157 NWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGL  236 (353)
Q Consensus       157 pW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P~~~~l~~  236 (353)
                      |||++|+++|+++|++++|++++|+|+++||++++||++++|+||++   |++   +.++|++++|||||+||+++|+|+
T Consensus         1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~---~~~---~~~~e~~~l~k~~~~~p~~~~lp~   74 (181)
T TIGR03592         1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKD---DPQ---KLQQEMMKLYKEEGVNPLGGCLPL   74 (181)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh---hHH---HHHHHHHHHHHHhCCCcHHHHHHH
Confidence            69999999999999999999999999999999999999999999985   544   458999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcchHhHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH
Q 018597          237 FIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGF  316 (353)
Q Consensus       237 liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pDp~~ILPil~~~~~~~~~~l~~~~~~~~~p~~~~mk~~~~v~  316 (353)
                      ++|+|||+++|.++|++.    ++.++|++||+||+.+||||+||++++++++++.+++.+.+.  +  .+.+|.+++++
T Consensus        75 liQ~Pif~~~~~~lr~~~----~l~~~~flW~~dL~~~Dp~~iLPii~~~~~~~~~~~~~~~~~--~--~~~~k~m~~~~  146 (181)
T TIGR03592        75 LIQMPIFIALYQVLRRSI----ELRHAPFLWIKDLSAPDPYYILPILMGATMFLQQKLSPSGPP--D--PAQQKIMMYIM  146 (181)
T ss_pred             HHHHHHHHHHHHHHHhhH----HhccCCCcCccccCcccHHHHHHHHHHHHHHHHHHhcCCCCC--C--HHHHHHHHHHH
Confidence            999999999999999965    478999999999999999999999999999999999876432  2  23567788999


Q ss_pred             HHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597          317 AVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF  350 (353)
Q Consensus       317 ~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~  350 (353)
                      |+++++++.++|+|+++||++||+|+++|+++.+
T Consensus       147 p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~  180 (181)
T TIGR03592       147 PLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIIN  180 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998753

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.

>PRK02463 OxaA-like protein precursor; Provisional

Probab=100.00  E-value=6.1e-48  Score=372.62  Aligned_cols=201  Identities=21%  Similarity=0.372  Sum_probs=181.3

Q ss_pred             cHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHH----HHHHHhhchHHHHHHHHHhcccCCHHHHHHH
Q 018597          139 PVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKS----TSKLTLMRPRLEEIKQDMQDKAMDPMAVADG  214 (353)
Q Consensus       139 pv~~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~----~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~  214 (353)
                      -+.++.++++++|..+|++||++||++|+++|++++|++++|+++    ++||+++|||+++||+||++++ |++++++.
T Consensus        41 l~~p~~~~l~~i~~~~g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk~~~-~~~~~~~~  119 (307)
T PRK02463         41 LGAPMSYFIDYFANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLKNAT-TQEEKMAA  119 (307)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhcCC-ChHHHHHH
Confidence            368899999999999999999999999999999999999988875    6899999999999999999864 67777788


Q ss_pred             HHHHHHHHHHhCCCCcc--chhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcchHhHHHHHHHHHHHHHH
Q 018597          215 QKRMQNLFKEYGVHPLT--PLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITV  292 (353)
Q Consensus       215 ~qe~~~Lykk~gv~P~~--~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pDp~~ILPil~~~~~~~~~  292 (353)
                      ++|++++|||||+||++  ||+|+|+|+|||+++|++++.    .|++.+++|+|+ ||+.||  ++||++++++++++.
T Consensus       120 q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~----~~~l~~~~flwi-dL~~p~--~iLpii~~v~~~~q~  192 (307)
T PRK02463        120 QTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQY----TKGVSTSTFLGI-DLGSPS--LVLTAIIGVLYFFQS  192 (307)
T ss_pred             HHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhc----chhhccCCeeee-ecCchh--HHHHHHHHHHHHHHH
Confidence            99999999999999998  899999999999999999985    577999999999 998754  799999999999999


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhh
Q 018597          293 ECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGE  349 (353)
Q Consensus       293 ~l~~~~~~~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~  349 (353)
                      +++... .. +...++||.+++++|++++++++++|+||.+||++||+|+++|+++.
T Consensus       193 ~~~~~~-~~-~~q~~~mk~m~~~~Pim~~~~~~~~PagL~lYW~~snlfsi~Q~~i~  247 (307)
T PRK02463        193 WLSMMG-VP-EEQREQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVGGFFSIIQQLIT  247 (307)
T ss_pred             HHhccC-CC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            987643 22 22345688899999999999999999999999999999999999874

>PRK01318 membrane protein insertase; Provisional

Probab=100.00  E-value=2.2e-48  Score=398.99  Aligned_cols=198  Identities=27%  Similarity=0.569  Sum_probs=181.0

Q ss_pred             Ccc--cHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHH
Q 018597          136 SFL--PVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVAD  213 (353)
Q Consensus       136 ~~~--pv~~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~  213 (353)
                      ||+  .+.+++++|+++|.++| |||++||++|+++|++++|++++|+|+++||+++||||++||+||++   |+++   
T Consensus       300 G~~~~~~~pl~~~L~~i~~~~g-~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~---d~~k---  372 (521)
T PRK01318        300 GWLWFITKPLFWLLDFLHSFVG-NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKD---DPQK---  372 (521)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHh---hHHH---
Confidence            554  58999999999999999 99999999999999999999999999999999999999999999985   6654   


Q ss_pred             HHHHHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcc-cccCCCCcchHhHH-----HHHHHHH
Q 018597          214 GQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAF-WFTDLSTPDSFYIL-----PILTGLS  287 (353)
Q Consensus       214 ~~qe~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~l-W~~dLt~pDp~~IL-----Pil~~~~  287 (353)
                      .++||++|||||||||+++|+|+|+|+|||+++|.+++++.+    +..++|+ ||+||+.+||++||     |++++++
T Consensus       373 ~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e----l~~~~fl~Wi~DLs~~Dp~~il~~~~lPil~~~~  448 (521)
T PRK01318        373 MQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE----LRHAPFIGWIHDLSAPDPYFILHIGLLPILMGIT  448 (521)
T ss_pred             HHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH----hccCchheeeccccccccchhHHHHHHHHHHHHH
Confidence            599999999999999999999999999999999999999876    5667887 99999999999999     9999999


Q ss_pred             HHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597          288 FLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF  350 (353)
Q Consensus       288 ~~~~~~l~~~~~~~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~  350 (353)
                      ++++++++.+.   ++|+   ++++|++||+++++++.++|+||++||++||+++++|++++.
T Consensus       449 ~~~~~~l~~~~---~~~~---q~kim~~mpi~~~~~~~~~PagL~lYW~~sn~~si~Q~~~l~  505 (521)
T PRK01318        449 MFLQQKLNPTP---TDPM---QAKIMKFMPLIFTFFFLSFPAGLVLYWIVNNLLTIIQQYLIN  505 (521)
T ss_pred             HHHHHHhcCCC---CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998653   3454   345677799999999999999999999999999999998764

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=100.00  E-value=7.9e-48  Score=350.63  Aligned_cols=187  Identities=40%  Similarity=0.679  Sum_probs=171.7

Q ss_pred             hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCCccchhhh
Q 018597          157 NWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGL  236 (353)
Q Consensus       157 pW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P~~~~l~~  236 (353)
                      +||++|+++|+++|++++|+.++|+|+++||++++||++++|+||++   |++   +.++|++++|||||+||+++|+++
T Consensus         2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~---~~~---~~~~~~~~l~k~~~~~p~~~~~~~   75 (198)
T PF02096_consen    2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKE---DQQ---KMQQEMQKLYKKHGVNPLKGCLPP   75 (198)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHH---HHHHHHHHHHHHcCCCcHHHHHHH
Confidence            89999999999999999999999999999999999999999999964   444   468999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcc-----hHhHHHHHHHHHHHHHHHHhhc-cCCCCChHHHHHH
Q 018597          237 FIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPD-----SFYILPILTGLSFLITVECNMQ-EGLEGNPAAVTMK  310 (353)
Q Consensus       237 liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pD-----p~~ILPil~~~~~~~~~~l~~~-~~~~~~p~~~~mk  310 (353)
                      ++|+|||+++|.++|+|++ +|++.++|++|++||+.+|     ||++||++++++++++++++.+ ....+++..+.+|
T Consensus        76 liq~Pif~~~~~~lr~~~~-~~~~~~~g~lw~~dL~~~D~~~~~p~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~k  154 (198)
T PF02096_consen   76 LIQIPIFIGLFRALRRMAE-VPSLATGGFLWFPDLTAPDPTMGLPYFILPILAGASMFLNQELSMKNSKQKSPQQAKMMK  154 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hcccccCceeChHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCccccHHHH
Confidence            9999999999999999999 8999999999999999999     9999999999999999999864 1222344566678


Q ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597          311 NISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF  350 (353)
Q Consensus       311 ~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~  350 (353)
                      .+.+++|+++++++.++|+|+++||++||+|+++|+++.+
T Consensus       155 ~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~  194 (198)
T PF02096_consen  155 IMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILR  194 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8889999999999999999999999999999999998754

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>PRK01001 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=4.8e-46  Score=386.29  Aligned_cols=197  Identities=22%  Similarity=0.419  Sum_probs=173.2

Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q 018597          142 ALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNL  221 (353)
Q Consensus       142 ~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~L  221 (353)
                      ++.++++++|..+| |||++||++|+++|++++||+++|+|+++||+.+||||++||+||++   |+++   +|+|||+|
T Consensus       561 ~L~~ll~~fh~l~G-nwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKd---D~qK---~QqEmMkL  633 (795)
T PRK01001        561 LLFIIMKFFKFLTG-SWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKK---EPKR---AQMEIMAL  633 (795)
T ss_pred             HHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHh---HHHH---HHHHHHHH
Confidence            34666788999999 99999999999999999999999999999999999999999999985   5554   59999999


Q ss_pred             HHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcc--cccCCCCcchHh--------------HHHHHHH
Q 018597          222 FKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAF--WFTDLSTPDSFY--------------ILPILTG  285 (353)
Q Consensus       222 ykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~l--W~~dLt~pDp~~--------------ILPil~~  285 (353)
                      ||||||||++||+|+|+|+|||+++|++++++.+    +...+|+  |++||+.+||++              ||||+++
T Consensus       634 YKe~GVNPl~GCLPmLIQmPIFfALY~vL~~sie----LRgasFLpgWI~DLSapDplf~~~~~i~FiGd~i~ILPILmg  709 (795)
T PRK01001        634 YKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFL----LRGASFIPGWIDNLTAPDVLFSWETPIWFIGNEFHLLPILLG  709 (795)
T ss_pred             HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhHH----hcCCchhhhhHhhccCCCccccccccccccccchhHHHHHHH
Confidence            9999999999999999999999999999999876    4456676  999999999864              9999999


Q ss_pred             HHHHHHHHHhhccCC-CCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhh
Q 018597          286 LSFLITVECNMQEGL-EGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGE  349 (353)
Q Consensus       286 ~~~~~~~~l~~~~~~-~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~  349 (353)
                      +++++++++++.+.. ..++.+++++.|+.+||+++++++.++|+||++||++||+++++|++++
T Consensus       710 vtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI  774 (795)
T PRK01001        710 VVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVT  774 (795)
T ss_pred             HHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999999999864321 1223344556667899999999999999999999999999999999875

>PRK02201 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.1e-44  Score=355.11  Aligned_cols=207  Identities=17%  Similarity=0.297  Sum_probs=177.4

Q ss_pred             cHHHHHHHHHHHH------hhcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHH
Q 018597          139 PVAALQHFIDAMH------NFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVA  212 (353)
Q Consensus       139 pv~~l~~lL~~lh------~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~  212 (353)
                      -+.++.+++.++|      ...|+|||+|||++|+++|++++|++++|+++++||+++|||+++||+||++++.|+++++
T Consensus       108 ~v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~~d~~~~~  187 (357)
T PRK02201        108 FVYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQ  187 (357)
T ss_pred             HHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCHHHHH
Confidence            3667777787775      5579999999999999999999999999999999999999999999999998756999999


Q ss_pred             HHHHHHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcc---------hHhHHHHH
Q 018597          213 DGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPD---------SFYILPIL  283 (353)
Q Consensus       213 ~~~qe~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pD---------p~~ILPil  283 (353)
                      +.++|+++|||||||||+++|+|+|+|+|||+++|+++|.+.+    +....++|+ ||+.+|         ++++++++
T Consensus       188 k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~----l~~~~flgi-dLs~~~~~~~~~~~~~~l~l~ii  262 (357)
T PRK02201        188 RKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS----IKVTTWLGI-DLSATSWQEIFAGNWIYLPILII  262 (357)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh----hccCCCccc-ccCCCChhhhccccchHHHHHHH
Confidence            9999999999999999999999999999999999999998765    667889999 999988         34556667


Q ss_pred             HHHHHHHHHHHh----hccCC------CCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597          284 TGLSFLITVECN----MQEGL------EGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF  350 (353)
Q Consensus       284 ~~~~~~~~~~l~----~~~~~------~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~  350 (353)
                      +++++++++.+.    .+++.      ++++..+++++++++||+++++++.++|+||.+||++||+|+++|+++.+
T Consensus       263 ~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq~~i~  339 (357)
T PRK02201        263 VVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQTLGIH  339 (357)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777666443    32221      12233456788999999999999999999999999999999999998754

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.2e-44  Score=350.07  Aligned_cols=203  Identities=29%  Similarity=0.524  Sum_probs=180.7

Q ss_pred             cccHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHH
Q 018597          137 FLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQK  216 (353)
Q Consensus       137 ~~pv~~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~q  216 (353)
                      |.+...+..+++++|.+.|+|||++|+++|+++|++++|++.++.++++||+.+|||+++||+||++  .|+++   .|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~--~~~~~---~q~  163 (314)
T COG0706          89 WNILAPLFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKG--TDKQK---QQQ  163 (314)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCC--CCHHH---HHH
Confidence            3455558899999999999999999999999999999999999999999999999999999999995  36655   488


Q ss_pred             HHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcc-cccCCCCcchHhHH--HHHHHHHHHHHHH
Q 018597          217 RMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAF-WFTDLSTPDSFYIL--PILTGLSFLITVE  293 (353)
Q Consensus       217 e~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~l-W~~dLt~pDp~~IL--Pil~~~~~~~~~~  293 (353)
                      |+++|||||||||+.||+|+++|+|||+++|.++++..+    +...+++ |++||+.+||++++  ||+++++++.+.+
T Consensus       164 e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~----l~~~~f~~w~~dl~~~dp~~~~~~pii~gv~~f~q~~  239 (314)
T COG0706         164 EMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE----LRGAPFLGWITDLSLPDPDYILLLPILAGVTMFLQQK  239 (314)
T ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc----ccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999877    4445555 99999999999976  9999999999999


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597          294 CNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF  350 (353)
Q Consensus       294 l~~~~~~~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~  350 (353)
                      ++.+...  ++..+++++++.+||+++.++++++|+||++||++||+|+++|++++.
T Consensus       240 ls~~~~~--~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~Qq~ii~  294 (314)
T COG0706         240 LSPRNLS--TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILN  294 (314)
T ss_pred             hccccCC--cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHh
Confidence            9886421  222335788899999999999999999999999999999999999765

>PRK03449 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=5.4e-43  Score=337.42  Aligned_cols=209  Identities=21%  Similarity=0.383  Sum_probs=169.4

Q ss_pred             CcccHHHHHHHHHHHHh-----hcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHH
Q 018597          136 SFLPVAALQHFIDAMHN-----FTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMA  210 (353)
Q Consensus       136 ~~~pv~~l~~lL~~lh~-----~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~  210 (353)
                      .|.|++.+.++++.++.     .+|+|||+||+++|+++|++++|++++|+|+++||+++|||++++|+||++   |++ 
T Consensus         5 ~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~---~~~-   80 (304)
T PRK03449          5 IYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGN---DRQ-   80 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhh---hHH-
Confidence            45677777777766543     479999999999999999999999999999999999999999999999985   444 


Q ss_pred             HHHHHHHHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCccccc---------------------CCcc---
Q 018597          211 VADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKN---------------------GGAF---  266 (353)
Q Consensus       211 ~~~~~qe~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~---------------------~g~l---  266 (353)
                        +.++|+++|||||||||+++|+|+|+|+|||+++|.++|+|++..++..+                     ++|+   
T Consensus        81 --~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~~  158 (304)
T PRK03449         81 --KMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDAR  158 (304)
T ss_pred             --HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhhh
Confidence              45899999999999999999999999999999999999998653222110                     1333   


Q ss_pred             --------ccc----------CCCCcchH---hHHHHHHHHHHHHHHHHhhccCC---CCChHHHHH-HHHHHHHHHHHH
Q 018597          267 --------WFT----------DLSTPDSF---YILPILTGLSFLITVECNMQEGL---EGNPAAVTM-KNISRGFAVLSI  321 (353)
Q Consensus       267 --------W~~----------dLt~pDp~---~ILPil~~~~~~~~~~l~~~~~~---~~~p~~~~m-k~~~~v~~v~~~  321 (353)
                              |+.          |++.+|..   ++|||+++++++++.++++.+..   ..++.++.| |.|+++||++++
T Consensus       159 ~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m~k~M~~~mP~m~~  238 (304)
T PRK03449        159 LFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNKLALWVFPLGVL  238 (304)
T ss_pred             hcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHHHHHHHHHhHHHHH
Confidence                    333          56666643   46889999999999998764322   123433334 667799999999


Q ss_pred             HhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597          322 PLTMTFPKAIFCYWITSNFFSLVYGLGEF  350 (353)
Q Consensus       322 ~~~~~~Paal~lYW~tSnlfsl~Q~lv~~  350 (353)
                      +++.++|+|+.+||++||+|+++|+++.+
T Consensus       239 ~~~~~~Pagl~LYW~~snl~~i~Qq~~i~  267 (304)
T PRK03449        239 VGGPFLPLAILLYWVSNNIWTFGQQHYVF  267 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998754

>PRK01315 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=3.2e-42  Score=334.99  Aligned_cols=190  Identities=25%  Similarity=0.454  Sum_probs=159.4

Q ss_pred             hcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCCccc
Q 018597          153 FTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTP  232 (353)
Q Consensus       153 ~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P~~~  232 (353)
                      .+|+|||++|+++|+++|++++|++++|+|+++||++++||+++||+||++   |++   ++++|+++|||||||||+++
T Consensus        37 ~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~kyk~---~~~---~~~~e~~~Lykk~ginp~~g  110 (329)
T PRK01315         37 DSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKG---DRE---RMSQEMMKLYKETGTNPLSS  110 (329)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHh---HHH---HHHHHHHHHHHHcCCCchHH
Confidence            468899999999999999999999999999999999999999999999996   444   35899999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhhc-----------CcccccCCcccccCCCC----------cch---HhHHHHHHHHHH
Q 018597          233 LKGLFIQGPVFISFFLAISNMAEK-----------VPSFKNGGAFWFTDLST----------PDS---FYILPILTGLSF  288 (353)
Q Consensus       233 ~l~~liQiPIfi~lf~alr~m~~~-----------vpsl~~~g~lW~~dLt~----------pDp---~~ILPil~~~~~  288 (353)
                      |+|+|+|+|||+++|.+||++++.           .+++..+.++|+ +|+.          .|.   ++|||+++++++
T Consensus       111 clp~liQ~Pif~alf~~l~~~~~~~~~~~~~~~~~~~s~~~~~~fg~-~L~~~f~~~~~~~~~~~~ii~~iL~il~~~~~  189 (329)
T PRK01315        111 CLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGA-PLAATFLQALNAGNTAVQVVAAVLIILMSASQ  189 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccc-cccccccccccccccchHHHHHHHHHHHHHHH
Confidence            999999999999999999987642           234555566554 3332          222   468999999999


Q ss_pred             HHHHHHhhccC----CCCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhh
Q 018597          289 LITVECNMQEG----LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGE  349 (353)
Q Consensus       289 ~~~~~l~~~~~----~~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~  349 (353)
                      ++++...+.+.    ...+|+.+++|.++++||+++++++.++|+||.+||++||+|+++|+++.
T Consensus       190 ~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~LYW~~snl~si~Qq~~v  254 (329)
T PRK01315        190 FITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYWLTSNVWTMGQQFYV  254 (329)
T ss_pred             HHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98865433222    22356667788889999999999999999999999999999999999764

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=100.00  E-value=1.6e-40  Score=331.53  Aligned_cols=209  Identities=21%  Similarity=0.400  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHHHhh----c----CChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHH
Q 018597          140 VAALQHFIDAMHNF----T----GFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAV  211 (353)
Q Consensus       140 v~~l~~lL~~lh~~----~----GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~  211 (353)
                      +.++.++|.++|..    .    |+|||++|+++|++||++++|++++|+|+++||+.++|++++||+||+++. |++++
T Consensus         6 ~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~-d~e~~   84 (429)
T PRK00247          6 IYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKT-DEASI   84 (429)
T ss_pred             HHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCC-CHHHH
Confidence            45566777766643    2    578999999999999999999999999999999999999999999999864 78888


Q ss_pred             HHHHHHHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCccccc-----------------------------
Q 018597          212 ADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKN-----------------------------  262 (353)
Q Consensus       212 ~~~~qe~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~-----------------------------  262 (353)
                      +++++|+++|||||||||+.+|+|+|||+|||+++|++||+|+.+.+++.+                             
T Consensus        85 ~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvpL~~  164 (429)
T PRK00247         85 RELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVPLPA  164 (429)
T ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCCccc
Confidence            899999999999999999999999999999999999999999865555432                             


Q ss_pred             ------CCcccccCCCCcch-HhHHH--HHHHHHHHHHHHHhhccC----CCCCh----HHHHHHHHHHHHHHHHHHhhc
Q 018597          263 ------GGAFWFTDLSTPDS-FYILP--ILTGLSFLITVECNMQEG----LEGNP----AAVTMKNISRGFAVLSIPLTM  325 (353)
Q Consensus       263 ------~g~lW~~dLt~pDp-~~ILP--il~~~~~~~~~~l~~~~~----~~~~p----~~~~mk~~~~v~~v~~~~~~~  325 (353)
                            ++++|+ +.+.+|. +++||  ++++++++++..+++.+.    ...++    +++.|..+++++|++.+.+++
T Consensus       165 ~~sm~~e~~~~~-~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~~g~  243 (429)
T PRK00247        165 YVSMPAEQLAYL-GTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLSLGL  243 (429)
T ss_pred             ccccchhhhhhc-cCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence                  122222 2344554 46788  455556667777765432    12334    333455556778887666554


Q ss_pred             c--hhhHHHHHHHHhhHHHHHHHhhhe
Q 018597          326 T--FPKAIFCYWITSNFFSLVYGLGEF  350 (353)
Q Consensus       326 ~--~Paal~lYW~tSnlfsl~Q~lv~~  350 (353)
                      +  +|+||.|||++||+|+++|+++.|
T Consensus       244 ~~~~PaallLYWv~snlwtl~Qq~i~~  270 (429)
T PRK00247        244 TGPFPTAIALYWVANNLWTLIQNIIMY  270 (429)
T ss_pred             hccchHHHHHHHHHhhHHHHHHHHHHH
Confidence            4  899999999999999999999765

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-38  Score=310.69  Aligned_cols=263  Identities=37%  Similarity=0.601  Sum_probs=223.8

Q ss_pred             ccccccccccCCCCCCcccccccccc-cccch----hhhHHHhhccCcchhHHHHHhcCCcccHHHHHHHHHHHHhhcCC
Q 018597           82 VGSAFCRYMSTTVGEGADKIELISDV-ADVFT----ETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGF  156 (353)
Q Consensus        82 ~~~~~~R~~St~~~~~s~~~~~~~~~-~~v~~----~~~~~~~~~~~p~~~e~~~~~~~~~~pv~~l~~lL~~lh~~~Gl  156 (353)
                      .+-..||.+|+...++.+..+.+.-+ .+..+    +.....+.+......+++....++|.|++.+|++|+.+|++.|+
T Consensus        21 l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p~~~lq~~l~~~h~~~g~  100 (372)
T KOG1239|consen   21 LLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRPVATLQNELERLHVYSGL  100 (372)
T ss_pred             hhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCchhHHHHHHHHHHHHhCC
Confidence            34557777777666665553332111 11111    11111122222333445667779999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCCccchhhh
Q 018597          157 NWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGL  236 (353)
Q Consensus       157 pW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P~~~~l~~  236 (353)
                      |||++|+..|+.+|.+++|+.++++|+.+|++.+.||+.++.+++++++.|.......++|+++++|+||++| +++..+
T Consensus       101 pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~  179 (372)
T KOG1239|consen  101 PWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQKLLVKKYGVKP-KQLALP  179 (372)
T ss_pred             cchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHHHhhhhhcCCCc-chhhhh
Confidence            9999999999999999999999999999999999999999999999877777777788889999999999999 999999


Q ss_pred             hhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcchHhHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH
Q 018597          237 FIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGF  316 (353)
Q Consensus       237 liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pDp~~ILPil~~~~~~~~~~l~~~~~~~~~p~~~~mk~~~~v~  316 (353)
                      ++|+|+|+++|.+||.|+.+++++.++|++||+||+.+||++++|+++++++..++|++.+.+....++...|+.+.+.+
T Consensus       180 v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (372)
T KOG1239|consen  180 VVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPDPLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRIL  259 (372)
T ss_pred             hhcchhHHHHHHHHHHhhccccccchhhHHhcccccccCcchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999988877777788899999999


Q ss_pred             HHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhh
Q 018597          317 AVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGE  349 (353)
Q Consensus       317 ~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~  349 (353)
                      |++++++++++|+|+++||+    |+++|+.+.
T Consensus       260 ~ll~~~~t~~~~~a~~~ywl----~s~~~~~vl  288 (372)
T KOG1239|consen  260 PLLSLASTMQFPSAIFVYWL----FSLVQGLVL  288 (372)
T ss_pred             hhhhhhhhhhhhhhHHhhhh----hHHHHHHHh
Confidence            99999999999999999999    999998875

>PRK02654 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=3.5e-33  Score=268.03  Aligned_cols=198  Identities=23%  Similarity=0.437  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHH----HHHHHHhcccCCHHHHHHHH
Q 018597          140 VAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLE----EIKQDMQDKAMDPMAVADGQ  215 (353)
Q Consensus       140 v~~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~----~i~~k~~~~~~D~~~~~~~~  215 (353)
                      -.++.++++++|..+| +||++|+++|+++|++++|++++|+|+++||+.+||||+    +||+||++   |+++   .+
T Consensus        10 ~~il~~iL~f~y~~vg-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYKd---Dpqk---~Q   82 (375)
T PRK02654         10 NNVMLPILDFFYGIVP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKN---DPQK---QQ   82 (375)
T ss_pred             HhHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhcC---CHHH---HH
Confidence            4577889999999998 999999999999999999999999999999999999985    69999975   6654   48


Q ss_pred             HHHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhh---------------------c------------------
Q 018597          216 KRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAE---------------------K------------------  256 (353)
Q Consensus       216 qe~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~---------------------~------------------  256 (353)
                      +||++|||||| ||++||+|+++|+|||+++|.+||...-                     +                  
T Consensus        83 qEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~spf~~~~y~~~l~i~p~~qi~~v~~~~~~~~~~~i~~~~~~h~  161 (375)
T PRK02654         83 EEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVLPSEQIAAVQPQPFKSKPQNIFITDGVHF  161 (375)
T ss_pred             HHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhCccccccceeecccCCHHHHhhhcCCCcCCCCceEEEecCccc
Confidence            99999999999 9999999999999999999999998430                     0                  


Q ss_pred             ----------------------------------------------------------------------------Cccc
Q 018597          257 ----------------------------------------------------------------------------VPSF  260 (353)
Q Consensus       257 ----------------------------------------------------------------------------vpsl  260 (353)
                                                                                                  +|++
T Consensus       162 ~~~a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~~~~~~~~g~~~al~pgd~ti~~~ipg~  241 (375)
T PRK02654        162 PVIASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEERVKVSEDGTIEALAPGDATIQGTIPGL  241 (375)
T ss_pred             eEEEEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCceeEEECCCCcEEEecCCceEEEEeecce
Confidence                                                                                        0001


Q ss_pred             c-cCCcccccCCCC-----cch-----HhHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHH--HHhhcch
Q 018597          261 K-NGGAFWFTDLST-----PDS-----FYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLS--IPLTMTF  327 (353)
Q Consensus       261 ~-~~g~lW~~dLt~-----pDp-----~~ILPil~~~~~~~~~~l~~~~~~~~~p~~~~mk~~~~v~~v~~--~~~~~~~  327 (353)
                      . +.||+++.-|+.     .|.     ..++-+.++++.++++.++.+ ++.++|.++++.++   .|+++  +++++-+
T Consensus       242 aa~~gflfi~alg~vg~~~~dg~i~wdi~~mi~~fg~sl~~~q~lsg~-~~~~~~qq~t~nki---tpv~~sgmflffpl  317 (375)
T PRK02654        242 AANSGFLFIKALGQVGFYDVDGAINWDILIMVLGFGVSLYLSQVLSGQ-GMPANPQQSTANKI---TPVMFSGMFLFFPL  317 (375)
T ss_pred             ecccCceehHhhcccCccCCCCceeHHHHHHHHHhhhhhhhhHhhhcC-CCCCChhHHHHHhh---hhHHHhhhHhcccc
Confidence            0 124444444443     232     135666778999999999865 44567776665544   44443  4566778


Q ss_pred             hhHHHHHHHHhhHHHHHHHhhh
Q 018597          328 PKAIFCYWITSNFFSLVYGLGE  349 (353)
Q Consensus       328 Paal~lYW~tSnlfsl~Q~lv~  349 (353)
                      |+|+.+||+..|+|+.+|+++.
T Consensus       318 pagvllym~ianifq~~qt~~l  339 (375)
T PRK02654        318 PAGVLLYMVIANIFQTLQTFLL  339 (375)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999865

>COG1422 Predicted membrane protein [Function unknown]

Probab=97.37  E-value=0.0011  Score=60.52  Aligned_cols=96  Identities=11%  Similarity=0.190  Sum_probs=57.2

Q ss_pred             ChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHhC---CCCc
Q 018597          156 FNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDK--AMDPMAVADGQKRMQNLFKEYG---VHPL  230 (353)
Q Consensus       156 lpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~--~~D~~~~~~~~qe~~~Lykk~g---v~P~  230 (353)
                      .|--++|.++++++-+. +-+.-+-.-..+||+++|.++++.|++++++  ++|.+++++.|+|.+++.....   -..|
T Consensus        44 ~~p~lvilV~avi~gl~-~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qf  122 (201)
T COG1422          44 LPPHLVILVAAVITGLY-ITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQF  122 (201)
T ss_pred             cccHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35567777777776653 2223333446789999999999999999874  3477777777776655543221   1123


Q ss_pred             cchh-hhhhhHHHHHHHHHHHHH
Q 018597          231 TPLK-GLFIQGPVFISFFLAISN  252 (353)
Q Consensus       231 ~~~l-~~liQiPIfi~lf~alr~  252 (353)
                      +++. -.++.||+|.-+++-+..
T Consensus       123 kPM~~~~v~tI~~F~Wl~~~~~~  145 (201)
T COG1422         123 KPMLYISVLTIPFFAWLRWFVGT  145 (201)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcc
Confidence            3222 223445555555555543

>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function

Probab=93.66  E-value=0.34  Score=43.01  Aligned_cols=97  Identities=13%  Similarity=0.127  Sum_probs=45.8

Q ss_pred             CChhHHHHHHHHHHHhhhhhhhHH-----HHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCC
Q 018597          155 GFNWWASIIVTTLLIRTATVPLLI-----NQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHP  229 (353)
Q Consensus       155 GlpW~~aIil~TvivRl~l~PL~i-----~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P  229 (353)
                      -+|..+.|++++++.-++.-=+..     +..+...++++++-+.++++++-+.  ..+++.++.++++++..++---..
T Consensus        12 ~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~   89 (168)
T PF01956_consen   12 LLPITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNGDF--KKPKKLEKRQMELMEKQQEMMMMM   89 (168)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcCCc--cCHHHHHHHHHHHHHHHHHHHHHH
Confidence            357777777777666554321111     1122333444445555554442221  234455455555554444432222


Q ss_pred             ccch-hhhhhhHHHHHHHHHHHHHh
Q 018597          230 LTPL-KGLFIQGPVFISFFLAISNM  253 (353)
Q Consensus       230 ~~~~-l~~liQiPIfi~lf~alr~m  253 (353)
                      +++. ..+++++|+|..+++.....
T Consensus        90 mK~~~~~~v~~i~i~~wi~~~f~g~  114 (168)
T PF01956_consen   90 MKPMFVTMVPQIPIFYWINYFFSGF  114 (168)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhc
Confidence            3332 23456666666666655543

Members are predicted to be integral membrane proteins.; GO: 0016020 membrane

>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function

Probab=80.90  E-value=4.4  Score=35.89  Aligned_cols=69  Identities=16%  Similarity=0.175  Sum_probs=49.3

Q ss_pred             HHhhchHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhh
Q 018597          187 LTLMRPRLEEIKQDMQDK--AMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAE  255 (353)
Q Consensus       187 m~~l~Pel~~i~~k~~~~--~~D~~~~~~~~qe~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~  255 (353)
                      |.+.+-+.+++++++++.  ..|....++.+++.+++.++..=-....+.++++.+.+++.+|..++..-.
T Consensus        42 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~mK~~~~~~v~~i~i~~wi~~~f~  112 (168)
T PF01956_consen   42 MDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEMMMMMMKPMFVTMVPQIPIFYWINYFFS  112 (168)
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence            566666666777776652  456667777777777777776655556677999999889999988877544

Members are predicted to be integral membrane proteins.; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	353
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 6e-07
 Identities = 49/366 (13%), Positives = 92/366 (25%), Gaps = 134/366 (36%)

Query: 30  DHKQKSPDETLS-RTNIHSFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLV------PSV 82
           DH         S +  +   ++S+ + N L                   LV         
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCL-------------------LVLLNVQNAKA 258

Query: 83  GSAF---CRYMSTT--------VGEGADKIELISDVADVFTE------------TTVQAI 119
            +AF   C+ + TT        +         +   +   T                Q +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 120 ANQAPAVNEVAIA--AA---------DSFLPV------AALQHFIDAM---------HNF 153
             +    N   ++  A          D++  V        ++  ++ +            
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 154 TGFN-------------WWASI------IVTTLLIRTATVPLLINQLKSTSKLTLMRPRL 194
           + F              W+  I      +V  L   +     L+ +    S +++    L
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-----LVEKQPKESTISIPSIYL 433

Query: 195 EEIKQDMQDKAMDPMAVADGQKRM---QNLFKEYGVHPLTPLK--GLFIQGPVFISFFLA 249
           E   +   + A+         + +    N+ K +    L P      F      I   L 
Sbjct: 434 ELKVKLENEYAL--------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIGHHLK 482

Query: 250 ISNMAEKVPSFKNGGAFWFTDL------------STPDSFYILPILTGLSF---LITVEC 294
                E++  F+      F D             +   S  IL  L  L F    I    
Sbjct: 483 NIEHPERMTLFRM----VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 295 NMQEGL 300
              E L
Sbjct: 539 PKYERL 544

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 8e-07
 Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 58/219 (26%)

Query: 106 DVAD----VFTETTVQAIANQAPAVNEVAIAAADSFL--PVAALQHFIDAMHNFTGFNWW 159
           DV D    + ++  +  I     AV+        + L      +Q F++ +     + + 
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEMVQKFVEEVLR-INYKFL 94

Query: 160 ASIIVTTLLIRTATVPLLINQLKST-------SKLTLMRPRLEEIKQDMQDKAMDPMAVA 212
            S I T     +    + I Q           +K  +   RL+   +             
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLK------------- 139

Query: 213 DGQKRMQNLFKEYGVHPLTPLKGLFIQGP------VFISFFLAISNM-AEKVPSFKNGGA 265
                ++    E     L P K + I G             +A+    + KV    +   
Sbjct: 140 -----LRQALLE-----LRPAKNVLIDGVLGSGKTW-----VALDVCLSYKVQCKMDFKI 184

Query: 266 FW--FTDLSTPDSFYILPILTGLSFLITVECNMQEGLEG 302
           FW    + ++P++  +L +L  L + I  + N     + 
Sbjct: 185 FWLNLKNCNSPET--VLEMLQKLLYQI--DPNWTSRSDH 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00