Citrus Sinensis ID: 018623


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
MRVPRKCSPKFYESHVLPILNKKHAIQLTKFDYRLANKLDTDLQKLRCRVNYHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLHASNPDKVRRHGRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFGHKPTIRPNAKKLYKLFVDRNNMTWEEFASKVRTNQIGFMGEPNEVKPGRGEFHENPAACICEDSEAKARELLTPQNQTLGNHRKVDTHGSEAEDHLNDNDLDWSDMDYIDNGYTLQAKK
ccccccccHHHHHHHHHHHHHHccEEEEEcccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHccccccccccccccccccccccccccccccEEEEccccEEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccHHHHHHHHHHHHHHccEEEEcccHHHHHHcccHHHHHHEHHHHHHHHcccHHHHHHHHHHHHHHHHccccEEEEEEEEcccEEEEccccccccHHHHHHHHHHHHHHHccccccHHHHHHcccccccHHHHHHHHHHcccccccEEEEEEcEEccccHHHHHHHHHccccccccccccHHHHHHccccHHHHHHHHHEEEccccEEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccHHcccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mrvprkcspkfyeshvlpilnkKHAIQLTKFDYRLANKldtdlqklrcrvnyhalkftdpIRHIGKMLVERMRLKTKHFIALHLrfepdmlafsgcyygggdeeRTVLGALRKRWKslhasnpdkvrrhgrcpltpeEVGLMLRALGFGSDVHLYIAsgevyggretlaplkalfpnlhsketlaskyelepfssfSARMAALDFivcdesdvfvtnnngnmARILAGRRryfghkptirpnaKKLYKLFVDRNNMTWEEFASKVRtnqigfmgepnevkpgrgefhenpaacicedsEAKARELltpqnqtlgnhrkvdthgseaedhlndndldwsdmdyidngytlqakk
mrvprkcspkfyeshvlpilnKKHAIQLTKFDYRLANKLDTDLQKLRCrvnyhalkftdpirHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKslhasnpdkvrrhgrcpLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFvtnnngnmarilagrrryfghkptirpnakklYKLFVDRNNMTWEEFASKvrtnqigfmgePNEVKPGRGEFHENPAACICEDSEAKARELLtpqnqtlgnhrkvdthgseaedhlndndldwsdmDYIDNGYTLQAKK
MRVPRKCSPKFYESHVLPILNKKHAIQLTKFDYRLANKLDTDLQKLRCRVNYHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLHASNPDKVRRHGRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFGHKPTIRPNAKKLYKLFVDRNNMTWEEFASKVRTNQIGFMGEPNEVKPGRGEFHENPAACICEDSEAKARELLTPQNQTLGNHRKVDTHGSEAEDHLNDNDLDWSDMDYIDNGYTLQAKK
*********KFYESHVLPILNKKHAIQLTKFDYRLANKLDTDLQKLRCRVNYHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLH********RHGRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFGHKPTIRPNAKKLYKLFVDRNNMTWEEFASKVRTNQIGFM*******************CI******************************************WSDMDYIDN********
***PRKCSPKFYESHVLPILNKKHAIQLTKFDYRLANKLDTDLQKLRCRVNYHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKS*HAS****VRRHGRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFGHKPTIRPNAKKLYKLFVDRNNMTWEEFASKV*********************HENPAAC************************************************************
MRVPRKCSPKFYESHVLPILNKKHAIQLTKFDYRLANKLDTDLQKLRCRVNYHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLHASNPDKVRRHGRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFGHKPTIRPNAKKLYKLFVDRNNMTWEEFASKVRTNQIGFMGEPNEVKPGRGEFHENPAACICEDSEAKARELLTPQNQTLGNHRKVDTHGSEAEDHLNDNDLDWSDMDYIDNGYTLQAKK
****RKCSPKFYESHVLPILNKKHAIQLTKFDYRLANKLDTDLQKLRCRVNYHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLHASNPDKVRRHGRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFGHKPTIRPNAKKLYKLFVDRNNMTWEEFASKVRTNQIGFMGEPNEVKPGRGEFHENPAACICED********************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRVPRKCSPKFYESHVLPILNKKHAIQLTKFDYRLANKLDTDLQKLRCRVNYHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLHASNPDKVRRHGRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFGHKPTIRPNAKKLYKLFVDRNNMTWEEFASKVRTNQIGFMGEPNEVKPGRGEFHENPAACICEDSEAKARELLTPQNQTLGNHRKVDTHGSEAEDHLNDNDLDWSDMDYIDNGYTLQAKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query353 2.2.26 [Sep-21-2011]
Q8W486519 Uncharacterized protein A no no 0.866 0.589 0.363 3e-47
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 Back     alignment and function desciption
 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/316 (36%), Positives = 177/316 (56%), Gaps = 10/316 (3%)

Query: 1   MRVPRKCSPKFYESHVLPILNKKHAIQLTKFDYRLANKLDT-DLQKLRCRVNYHALKFTD 59
           +R PR    ++Y +  L  + +  AI LT F +RLA ++D  + Q+LRCRVNYHAL+F  
Sbjct: 178 IRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKP 237

Query: 60  PIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLH 119
            I  + + +V+++R    HF+++HLRFE DMLAF+GC+     EE+ +L   RK   +  
Sbjct: 238 HIMKLSESIVDKLR-SQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADK 296

Query: 120 ASNPDKVRRHGRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLH 179
               ++ R  G+CPLTPEEVGL+LRA+ F +   +Y+A+GE++GG + + P + LFP L 
Sbjct: 297 RLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLD 356

Query: 180 SKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNG--NMARILAGRRRYFGHKP 237
           +  ++    EL   +S     +A+D++VC  SD+F+   +G  N A  L G R Y+G + 
Sbjct: 357 NHSSVDPSEELSA-TSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRT 415

Query: 238 TIRPNAKKLYKLFVDRNNMTWEEFASKVRTNQI--GFMGEPNEVKPGRGEFHENP-AACI 294
           TIRP+ K L  +F+ R       F   VR   +   F G    V P    F+ N    C 
Sbjct: 416 TIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSP--ESFYTNSWPECF 473

Query: 295 CEDSEAKARELLTPQN 310
           C+ +  K+ +   P N
Sbjct: 474 CQMNPKKSSDKCPPNN 489


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,153,079
Number of Sequences: 539616
Number of extensions: 6144185
Number of successful extensions: 12815
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12809
Number of HSP's gapped (non-prelim): 1
length of query: 353
length of database: 191,569,459
effective HSP length: 118
effective length of query: 235
effective length of database: 127,894,771
effective search space: 30055271185
effective search space used: 30055271185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)



Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
224080776 585 predicted protein [Populus trichocarpa] 0.997 0.601 0.755 1e-160
225428165 680 PREDICTED: DUF246 domain-containing prot 0.997 0.517 0.748 1e-159
297744531 613 unnamed protein product [Vitis vinifera] 0.963 0.554 0.747 1e-158
559921 569 axi 1 [Nicotiana tabacum] 0.963 0.597 0.711 1e-153
224103067 560 predicted protein [Populus trichocarpa] 0.994 0.626 0.717 1e-152
255586213 580 conserved hypothetical protein [Ricinus 0.968 0.589 0.755 1e-152
449444409 604 PREDICTED: DUF246 domain-containing prot 0.974 0.569 0.729 1e-152
224086024 574 predicted protein [Populus trichocarpa] 0.889 0.547 0.799 1e-150
224061893 562 predicted protein [Populus trichocarpa] 0.946 0.594 0.734 1e-150
357495627 580 Auxin-independent growth promoter [Medic 0.983 0.598 0.701 1e-147
>gi|224080776|ref|XP_002306226.1| predicted protein [Populus trichocarpa] gi|222849190|gb|EEE86737.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/360 (75%), Positives = 309/360 (85%), Gaps = 8/360 (2%)

Query: 1   MRVPRKCSPKFYESHVLPILNKKHAIQLTKFDYRLANKLDTDLQKLRCRVNYHALKFTDP 60
           MRVPRKC+P  Y + VLP+LNKKH +QL KFDYRL+N+LD DLQKLRCRVNYHALKFTD 
Sbjct: 212 MRVPRKCTPTCYLTKVLPVLNKKHVVQLGKFDYRLSNRLDPDLQKLRCRVNYHALKFTDT 271

Query: 61  IRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLHA 120
           I  +GK LV+RMR+K++HFIALHLRFEPDMLAFSGCY+GGG++ER  LG +R+RWKSLHA
Sbjct: 272 ILEMGKKLVQRMRMKSEHFIALHLRFEPDMLAFSGCYFGGGEKERMELGKIRRRWKSLHA 331

Query: 121 SNPDKVRRHGRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHS 180
           SNPDK RR GRCPLTPEEVGLMLRALGFGSDVHLY+ASGEVYGG ETLAPLKALFPN HS
Sbjct: 332 SNPDKERRQGRCPLTPEEVGLMLRALGFGSDVHLYVASGEVYGGEETLAPLKALFPNFHS 391

Query: 181 KETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFGHKPTIR 240
           KETLAS  EL PFSSFS+RMAALDFIVCDESDVF TNNNGNMA+ILAGRRRYFGHKPTIR
Sbjct: 392 KETLASMRELAPFSSFSSRMAALDFIVCDESDVFSTNNNGNMAKILAGRRRYFGHKPTIR 451

Query: 241 PNAKKLYKLFVDRNNMTWEEFASKVRTNQIGFMGEPNEVKPGRGEFHENPAACICEDSEA 300
           PNAKKLYKLF+ R+N TWEEFAS+VRT+QIGFMGEPNEVKPGRGEFHENP++CICEDS A
Sbjct: 452 PNAKKLYKLFMSRHNKTWEEFASRVRTHQIGFMGEPNEVKPGRGEFHENPSSCICEDSAA 511

Query: 301 KARE--LLTPQNQTLGNHR--KVDTHGSEAEDHLN----DNDLDWSDMDYIDNGYTLQAK 352
           KAR    LTPQN+    H+  K + + +E  D  +    ++D D +DMDY+DNG  ++ K
Sbjct: 512 KARAGLTLTPQNRLDEGHKDGKENINKNETSDVTDELSIEDDQDLTDMDYVDNGTAVKGK 571




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428165|ref|XP_002278795.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744531|emb|CBI37793.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|559921|emb|CAA56570.1| axi 1 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|224103067|ref|XP_002312912.1| predicted protein [Populus trichocarpa] gi|222849320|gb|EEE86867.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255586213|ref|XP_002533764.1| conserved hypothetical protein [Ricinus communis] gi|223526321|gb|EEF28623.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449444409|ref|XP_004139967.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224086024|ref|XP_002307782.1| predicted protein [Populus trichocarpa] gi|222857231|gb|EEE94778.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061893|ref|XP_002300651.1| predicted protein [Populus trichocarpa] gi|222842377|gb|EEE79924.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357495627|ref|XP_003618102.1| Auxin-independent growth promoter [Medicago truncatula] gi|355519437|gb|AET01061.1| Auxin-independent growth promoter [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
TAIR|locus:2014619572 AT1G76270 [Arabidopsis thalian 0.983 0.606 0.695 1.1e-135
TAIR|locus:2121793551 RHS17 "root hair specific 17" 0.861 0.551 0.756 1.5e-131
TAIR|locus:2130938549 AT4G16650 [Arabidopsis thalian 0.940 0.604 0.581 1.6e-104
TAIR|locus:2049527567 AT2G01480 [Arabidopsis thalian 0.847 0.527 0.397 1.6e-56
TAIR|locus:2009467565 AT1G22460 [Arabidopsis thalian 0.824 0.515 0.440 1.1e-55
TAIR|locus:2143181508 AT5G15740 [Arabidopsis thalian 0.798 0.555 0.422 2.9e-55
TAIR|locus:2056981508 AT2G03280 [Arabidopsis thalian 0.801 0.557 0.442 3.7e-55
TAIR|locus:2029984611 AT1G29200 [Arabidopsis thalian 0.611 0.353 0.393 5.4e-55
TAIR|locus:2174754522 AT5G64600 [Arabidopsis thalian 0.818 0.553 0.418 1.3e-54
TAIR|locus:2065563638 AT2G37980 [Arabidopsis thalian 0.813 0.449 0.405 3.4e-54
TAIR|locus:2014619 AT1G76270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1329 (472.9 bits), Expect = 1.1e-135, P = 1.1e-135
 Identities = 247/355 (69%), Positives = 297/355 (83%)

Query:     1 MRVPRKCSPKFYESHVLPILNKKHAIQLTKFDYRLANKLDTDLQKLRCRVNYHALKFTDP 60
             MRVPRKC+ + Y + VLP+L K+HA+QL KFDYRL+NKL  DLQKLRCRVNYHALKFTDP
Sbjct:   192 MRVPRKCNERCYINRVLPVLLKRHAVQLNKFDYRLSNKLSDDLQKLRCRVNYHALKFTDP 251

Query:    61 IRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLHA 120
             I  +G  LV RMRL++KHFIALHLR+EPDMLAFSGCYYGGGD+ER  L A+R+RWK+LH 
Sbjct:   252 ILTMGNELVRRMRLRSKHFIALHLRYEPDMLAFSGCYYGGGDKERRELAAIRRRWKTLHI 311

Query:   121 SNPDKVRRHGRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHS 180
             +NP+K RR GRCPLTPEEVGLMLRALG+GSDVH+Y+ASGEVYGG E+LAPLKALFP+ +S
Sbjct:   312 NNPEKQRRQGRCPLTPEEVGLMLRALGYGSDVHIYVASGEVYGGEESLAPLKALFPHFYS 371

Query:   181 KETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFGHKPTIR 240
             K+T+A+K ELEPFSS+S+RMAALDF+VCDESDVFVTNNNGNMA+ILAGRRRY GHKPT+R
Sbjct:   372 KDTIATKEELEPFSSYSSRMAALDFLVCDESDVFVTNNNGNMAKILAGRRRYLGHKPTVR 431

Query:   241 PNAKKLYKLFVDRNNMTWEEFASKVRTNQIGFMGEPNEVKPGRGEFHENPAACICEDSEA 300
             PNAKKLY+LF+++ N TWEEF+SKVR+ Q GFMGEP EV+ GRGEFHENP+ CICED+EA
Sbjct:   432 PNAKKLYRLFMNKENTTWEEFSSKVRSFQRGFMGEPKEVRAGRGEFHENPSTCICEDTEA 491

Query:   301 KARELLTPQNQTLGNHRKVDTHGSEA-----EDHLNDNDLDWSDMDYIDNGYTLQ 350
             KA+  L  +++ LG   K  T+   A     +D   ++D DWS+ DY +    LQ
Sbjct:   492 KAKAQL--ESRKLGKKNK-STNKDAAVTVTNDDQTEEDDPDWSEPDYEEEQSDLQ 543




GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2121793 RHS17 "root hair specific 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049527 AT2G01480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143181 AT5G15740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056981 AT2G03280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029984 AT1G29200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065563 AT2G37980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pg.C_LG_IV001554
hypothetical protein (585 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
cd11299290 cd11299, O-FucT_plant, GDP-fucose protein O-fucosy 1e-106
pfam10250315 pfam10250, O-FucT, GDP-fucose protein O-fucosyltra 2e-80
cd11296206 cd11296, O-FucT_like, GDP-fucose protein O-fucosyl 3e-11
>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily Back     alignment and domain information
 Score =  313 bits (804), Expect = e-106
 Identities = 120/239 (50%), Positives = 151/239 (63%), Gaps = 34/239 (14%)

Query: 1   MRVPRKCSPKFYESHVLPILNKKHAIQLTKFDYRLANK-LDTDLQKLRCRVNYHALKFTD 59
            RVP + SP +Y   VLP+L K   I+L  FD RLAN  L  ++Q+LRCRVN+HAL+F  
Sbjct: 85  KRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLANDLLPPEIQRLRCRVNFHALRFVP 144

Query: 60  PIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLH 119
            I  +G  LV+R+R     F+ALHLRFE DMLAFSGC                       
Sbjct: 145 EIEELGDKLVDRLREAGGPFLALHLRFEKDMLAFSGC----------------------- 181

Query: 120 ASNPDKVRRHGRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLH 179
                     G+CPLTPEEVGL+LRALGF     +Y+A+GE+YGG   L PL+++FPNL+
Sbjct: 182 ----------GKCPLTPEEVGLLLRALGFPRSTRIYLAAGEIYGGERRLDPLRSIFPNLY 231

Query: 180 SKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFGHKPT 238
           +KETLA+  EL PFS  S+R+AALD+IVC ESDVFV    GN A+ +AG RRY GH+ T
Sbjct: 232 TKETLATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGGNFAKAVAGHRRYLGHRKT 290


Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290

>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase Back     alignment and domain information
>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 353
PF10250351 O-FucT: GDP-fucose protein O-fucosyltransferase; I 100.0
PF05830321 NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 94.25
KOG3849386 consensus GDP-fucose protein O-fucosyltransferase 92.61
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats Back     alignment and domain information
Probab=100.00  E-value=3.6e-40  Score=314.10  Aligned_cols=214  Identities=39%  Similarity=0.678  Sum_probs=150.4

Q ss_pred             CCChHHHHHhhhhhhhhc------ceEEEccccccccCC-CChHHHHhhhhhcccccccchhHHHHHHHHHHHHHhccCC
Q 018623            6 KCSPKFYESHVLPILNKK------HAIQLTKFDYRLANK-LDTDLQKLRCRVNYHALKFTDPIRHIGKMLVERMRLKTKH   78 (353)
Q Consensus         6 ~~s~~~Y~~~ilP~l~k~------~VI~l~~~~~rLa~~-lp~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~Rlr~~~~p   78 (353)
                      +..+.+|+++++|++.++      +||.|.++..++.+. .+.++||        +|+|+++|+++|+++|++++..+++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~  196 (351)
T PF10250_consen  125 WSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYLDRDLQR--------YLRFSPEIRELADKFIKRLLAGGGP  196 (351)
T ss_dssp             E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GGGGGGGG--------G--B-HHHHHHHHHHHHHH----SS
T ss_pred             cCCchhhHHHhhhHHhhhccccccccceeccccccchhcccCccceE--------EEecCHHHHHHHHHHHHHhhcccCc
Confidence            577888999999999987      999999999999975 7889988        9999999999999999999955689


Q ss_pred             eEEEEeecchhhhhhhccCCCCChhHHHHHHHHHHHhhhhcCCCchhhhccCCCCCCHHHHHHHHHHhCCCCcceEEEEe
Q 018623           79 FIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLHASNPDKVRRHGRCPLTPEEVGLMLRALGFGSDVHLYIAS  158 (353)
Q Consensus        79 fiALHLR~E~DMlAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~CPLtPeEvgl~LrAlGf~~~T~IYlA~  158 (353)
                      |||+|||+|+||  +++|.+++   ++..|..+|..  ..+.+++...+..|.||++|++++.+++++|+.+.|.||||+
T Consensus       197 yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAt  269 (351)
T PF10250_consen  197 YIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW--GKKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIAT  269 (351)
T ss_dssp             EEEEEE--SHHH--HHHHCT-T-------TTTHHHH---GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEE
T ss_pred             eEEEeecccCch--HhhcccCC---chHHHHHhHhh--ccccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEec
Confidence            999999999999  99999955   77778777765  223456778899999999999999999999999999999999


Q ss_pred             ceeccccccccchHhhCCCcccccccCCccccCcCCCchhhhhhhhhhhhcCCceeeeCCCCchHHHHhhhhhccCCC
Q 018623          159 GEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFGHK  236 (353)
Q Consensus       159 geiyGg~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDvFV~t~~GNma~~v~GhR~y~G~~  236 (353)
                      +++|||.+.|.+|+++||++++|+++.+.+|+++|.+  .++|+||++||++||+||+|..++|+.+|+++|.|.|+.
T Consensus       270 d~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~  345 (351)
T PF10250_consen  270 DEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP  345 (351)
T ss_dssp             SS-----------HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred             CcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence            9999999999999999999999999999999999966  899999999999999999999999999999999999964



Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.

>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation Back     alignment and domain information
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 59/385 (15%), Positives = 100/385 (25%), Gaps = 110/385 (28%)

Query: 19  ILNKKHAIQLTKF-------DYR-LANKLDT-DLQKLRCRVNY---HALKFTDPIRHIGK 66
            L  K    + KF       +Y+ L + + T   Q       Y       + D  +   K
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN-QVFAK 128

Query: 67  MLVERMRLKTKHFIAL-HLRFEPD-----MLAFSGCYYGGGDEERTVLGALRKRWKSLHA 120
             V R++   K   AL  LR   +     +L   G     G   +T +         +  
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GS----G---KTWVALDVCLSYKVQC 178

Query: 121 SNPDKVRRH----GRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFP 176
               K+         C  +PE V  ML+ L       LY          +  + +K    
Sbjct: 179 KMDFKI--FWLNLKNC-NSPETVLEMLQKL-------LYQIDPNWTSRSDHSSNIKL--- 225

Query: 177 NLHS-KETLASKYELEPFSSFSARMAALDFI--VCDES--DVF-------VTNNNGNMAR 224
            +HS +  L    + +P+ +       L  +  V +    + F       +T     +  
Sbjct: 226 RIHSIQAELRRLLKSKPYEN------CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 225 ILAGRRRYFGHKPTIRPNAKKLYKLFVDRNNMTWEEFASKVRTNQIGFMGEPNEVKPGRG 284
            L+              +                      +          P EV     
Sbjct: 280 FLSAATTT-------HISLDHHSMTLTPDEVK--SLLLKYLD---CRPQDLPREVLTT-- 325

Query: 285 EFHENPAAC--ICEDSEAKARELLTPQNQTLGNHRKVDTHGSEAEDHLNDNDL------- 335
               NP     I   +E+    L T  N    N  K+ T    + + L   +        
Sbjct: 326 ----NPRRLSII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 336 -----D-----------WSDMDYID 344
                            W D+   D
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSD 403


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
4ap5_A408 GDP-fucose protein O-fucosyltransferase 2; GT-B, G 98.77
3zy2_A362 Putative GDP-fucose protein O-fucosyltransferase; 98.6
2de0_X526 Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran 96.74
2hhc_A330 NODZ, nodulation fucosyltransferase NODZ; glycosyl 94.34
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* Back     alignment and structure
Probab=98.77  E-value=1.1e-08  Score=100.18  Aligned_cols=166  Identities=18%  Similarity=0.249  Sum_probs=98.4

Q ss_pred             cccccchhHHHHHHHHHHHHHhccCCeEEEEeecchhhhhhhccCCCCChhHHHHHHHHHHHhhhhcCCCchhhhccCCC
Q 018623           53 HALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLHASNPDKVRRHGRC  132 (353)
Q Consensus        53 ~ALrF~p~I~~lg~~LV~Rlr~~~~pfiALHLR~E~DMlAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~C  132 (353)
                      ..|+|++.|.++|++.++..-.  ++|+++|+|...|+...  |.......-.        .+...+.-..+-......|
T Consensus       217 r~l~~s~~l~~~a~~fi~~~L~--~~~~~~h~r~~~dw~~~--~~~~~~~~~~--------~y~~~H~Rr~d~~~~~~~~  284 (408)
T 4ap5_A          217 RSMVFARHLREVGDEFRSRHLN--STDDADRIPFQEDWMKM--KVKLGSALGG--------PYLGVHLRRKDFIWGHRQD  284 (408)
T ss_dssp             HTCCBCHHHHHHHHHHHHHHHC--CCTTTTTCCCCSSGGGC--CCCTTCBCCE--------EEEEEEECCTTTTTTTCSS
T ss_pred             HHhhhhHHHHHHHHHHHHHHhC--cccceeecccchhHhhh--hcccccccCC--------Cccccccccccchhhhhcc
Confidence            4799999999999998887643  36666666666665542  3221100000        0000000000000111122


Q ss_pred             -CCCHHHHHHHHHHhCCCCcceEEEEeceeccccccccchHhhCCCcccccccCCccccCcCCCchhhhhhhhhhhhcCC
Q 018623          133 -PLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDES  211 (353)
Q Consensus       133 -PLtPeEvgl~LrAlGf~~~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~S  211 (353)
                       |-.+.-+..+.+.+-=-+-+.||||+-+   ....+.-|++.+|.++.-..  ..+++..+  .....|.||-.||.+|
T Consensus       285 ~ps~~~~~~~i~~~~~~~~~~~VyiATD~---~~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a  357 (408)
T 4ap5_A          285 VPSLEGAVRKIRSLMKTHRLDKVFVATDA---VRKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHA  357 (408)
T ss_dssp             SCCHHHHHHHHHHHHHHHTCSCEEEEECC---CHHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTE
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCC---chhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhC
Confidence             3222222222222222234579999875   34456789999998754322  22334444  2346799999999999


Q ss_pred             ceeeeCCCCchHHHHhhhhhccCCCC
Q 018623          212 DVFVTNNNGNMARILAGRRRYFGHKP  237 (353)
Q Consensus       212 DvFV~t~~GNma~~v~GhR~y~G~~k  237 (353)
                      |+||+|..++|+..|.=.|-+.|+..
T Consensus       358 ~~FiGt~~StfS~~I~~eR~~~G~~~  383 (408)
T 4ap5_A          358 RFFIGTSVSTFSFRIHEEREILGLDP  383 (408)
T ss_dssp             EEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred             CeeEeCCcCchhHHHHHHHHhcCCCC
Confidence            99999999999999999999999764



>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Back     alignment and structure
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Back     alignment and structure
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00